BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043560
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
           Member From Ricinus Communis, Target Efi-501866
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 1   GATVWKKFCSVQDQ-ESTMKEILEMLKTVEEHGLG--EKKFFHGD-IGLVDIAFASIVYW 56
           G  +W  F +  ++ E  +K  LE+LKT+EEH +G  + K+F GD IG+VDIAF  I +W
Sbjct: 105 GTAIWNIFRTKGEELEKAVKNCLEVLKTIEEHAMGVSDDKYFGGDKIGIVDIAFCGIAHW 164

Query: 57  LQIIEDVARV 66
           L +IE+VA V
Sbjct: 165 LGVIEEVAGV 174


>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
 pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
 pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7 Resolution
 pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7 Resolution
          Length = 219

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 12  QDQESTMKEILEMLKTVEEHGLGEKKFFHGD-IGLVDIAFASIVYWLQIIE 61
           +++E+  KE +E LK +EE  LG+K +F GD +G VDIA      W +  E
Sbjct: 119 EEKEAAKKEFIEALKLLEEQ-LGDKTYFGGDNLGFVDIALVPFYTWFKAYE 168


>pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An
           80s Complex Obtained By Docking Homology Models Of The
           Rna And Proteins Into An 8.7 A Cryo-Em Map
          Length = 212

 Score = 25.8 bits (55), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 13  DQESTMKEILEMLKTVEEHGLGEKKFFHGDIGLVDIAFASIVYWLQII 60
           D +  + E++E +K   +   GE++ FH  +G  D++  +I   + +I
Sbjct: 134 DPDDDVVEVIERMKNTVQLRSGERRTFHTRVGAEDMSAENIADNIDVI 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,905,866
Number of Sequences: 62578
Number of extensions: 55290
Number of successful extensions: 138
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 7
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)