Query 043562
Match_columns 176
No_of_seqs 225 out of 1321
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 3.6E-25 1.2E-29 191.0 13.5 134 34-176 131-273 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 3.8E-21 1.3E-25 176.9 10.3 137 29-176 122-265 (1249)
3 1vt4_I APAF-1 related killer D 99.8 6.2E-21 2.1E-25 172.9 10.4 132 33-176 130-273 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 1.2E-19 4E-24 157.0 8.7 136 29-176 122-265 (591)
5 1w5s_A Origin recognition comp 99.3 1.8E-12 6E-17 106.8 6.6 119 24-148 15-149 (412)
6 2qby_B CDC6 homolog 3, cell di 99.2 3.3E-11 1.1E-15 98.4 6.3 116 30-149 19-145 (384)
7 2v1u_A Cell division control p 99.1 1.9E-10 6.4E-15 93.5 7.5 115 29-149 17-142 (387)
8 2qby_A CDC6 homolog 1, cell di 99.1 2.1E-11 7.1E-16 99.1 1.6 120 23-148 12-139 (386)
9 1fnn_A CDC6P, cell division co 99.0 1.4E-09 4.9E-14 88.6 9.5 127 29-160 15-150 (389)
10 2qen_A Walker-type ATPase; unk 98.9 1.1E-09 3.8E-14 87.8 5.4 70 29-109 10-85 (350)
11 2fna_A Conserved hypothetical 98.8 9.3E-09 3.2E-13 82.4 7.3 69 29-108 11-84 (357)
12 1njg_A DNA polymerase III subu 98.7 2.2E-08 7.5E-13 75.4 6.7 46 31-77 23-68 (250)
13 2chg_A Replication factor C sm 98.7 1.1E-07 3.6E-12 70.9 10.1 103 31-156 17-123 (226)
14 3te6_A Regulatory protein SIR3 98.6 3.3E-08 1.1E-12 79.8 5.3 112 33-148 22-143 (318)
15 1jbk_A CLPB protein; beta barr 98.6 9E-08 3.1E-12 69.7 7.2 45 31-77 22-66 (195)
16 1sxj_B Activator 1 37 kDa subu 98.4 6.7E-07 2.3E-11 70.8 6.9 45 31-77 21-65 (323)
17 1iqp_A RFCS; clamp loader, ext 98.3 1.6E-06 5.6E-11 68.7 6.8 45 31-77 25-69 (327)
18 3h4m_A Proteasome-activating n 98.2 2E-06 6.8E-11 67.3 5.9 50 28-77 14-74 (285)
19 2w58_A DNAI, primosome compone 98.2 2.1E-06 7.3E-11 63.9 5.4 60 31-92 25-90 (202)
20 2p65_A Hypothetical protein PF 98.2 1.6E-06 5.4E-11 62.9 4.3 45 31-77 22-66 (187)
21 1hqc_A RUVB; extended AAA-ATPa 98.1 3.5E-06 1.2E-10 67.0 5.6 47 31-77 12-61 (324)
22 1sxj_A Activator 1 95 kDa subu 98.1 9.4E-06 3.2E-10 69.3 8.3 47 31-77 39-100 (516)
23 3pvs_A Replication-associated 98.0 2E-05 6.7E-10 66.3 8.5 45 31-77 26-73 (447)
24 3cf0_A Transitional endoplasmi 98.0 1.4E-05 4.8E-10 63.5 7.3 47 31-77 15-72 (301)
25 2zan_A Vacuolar protein sortin 98.0 2.8E-05 9.6E-10 65.2 9.2 47 31-77 134-190 (444)
26 3n70_A Transport activator; si 97.9 1.3E-05 4.6E-10 56.8 5.3 46 32-77 2-47 (145)
27 1xwi_A SKD1 protein; VPS4B, AA 97.9 2.1E-05 7.3E-10 63.2 7.0 48 30-77 11-68 (322)
28 3u61_B DNA polymerase accessor 97.9 4.5E-05 1.5E-09 60.7 8.5 46 31-77 26-71 (324)
29 1d2n_A N-ethylmaleimide-sensit 97.9 0.00012 4E-09 56.9 10.4 48 30-77 32-87 (272)
30 2z4s_A Chromosomal replication 97.8 1.5E-05 5.1E-10 66.8 5.1 50 32-84 106-158 (440)
31 3d8b_A Fidgetin-like protein 1 97.8 2.5E-05 8.5E-10 63.6 6.0 48 30-77 83-140 (357)
32 2r62_A Cell division protease 97.8 2.1E-05 7.2E-10 60.9 5.2 48 30-77 10-67 (268)
33 1qvr_A CLPB protein; coiled co 97.8 3E-05 1E-09 69.9 6.4 45 31-77 170-214 (854)
34 1ojl_A Transcriptional regulat 97.8 3.8E-05 1.3E-09 61.2 6.3 47 31-77 2-48 (304)
35 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00015 5E-09 64.5 10.4 45 31-77 186-230 (758)
36 3pfi_A Holliday junction ATP-d 97.8 1.4E-05 4.9E-10 64.0 3.4 47 31-77 29-78 (338)
37 4fcw_A Chaperone protein CLPB; 97.7 6.9E-05 2.4E-09 59.0 7.2 60 32-93 18-84 (311)
38 3uk6_A RUVB-like 2; hexameric 97.7 5E-05 1.7E-09 61.3 5.7 47 31-77 44-93 (368)
39 3co5_A Putative two-component 97.7 8.7E-06 3E-10 57.7 0.9 47 31-77 4-50 (143)
40 1jr3_A DNA polymerase III subu 97.7 4.6E-05 1.6E-09 61.5 5.1 46 31-77 16-61 (373)
41 3pxg_A Negative regulator of g 97.6 4.6E-05 1.6E-09 64.3 5.1 45 31-77 180-224 (468)
42 3bos_A Putative DNA replicatio 97.6 8.4E-05 2.9E-09 55.9 5.9 58 31-92 28-88 (242)
43 2qz4_A Paraplegin; AAA+, SPG7, 97.6 4.7E-05 1.6E-09 58.4 4.6 48 30-77 5-62 (262)
44 2bjv_A PSP operon transcriptio 97.6 6.1E-05 2.1E-09 58.3 5.2 47 31-77 6-52 (265)
45 4b4t_L 26S protease subunit RP 97.6 0.00013 4.5E-09 61.1 7.4 48 30-77 180-238 (437)
46 1sxj_D Activator 1 41 kDa subu 97.6 4.4E-05 1.5E-09 61.1 4.3 45 31-77 37-81 (353)
47 3b9p_A CG5977-PA, isoform A; A 97.6 3.3E-05 1.1E-09 60.7 3.4 48 30-77 20-77 (297)
48 3eie_A Vacuolar protein sortin 97.6 3.7E-05 1.3E-09 61.5 3.7 48 30-77 17-74 (322)
49 3syl_A Protein CBBX; photosynt 97.6 3.8E-05 1.3E-09 60.5 3.7 46 32-77 32-90 (309)
50 4b4t_K 26S protease regulatory 97.6 0.00014 4.8E-09 60.8 6.9 47 31-77 172-229 (428)
51 1rz3_A Hypothetical protein rb 97.5 0.00011 3.9E-09 54.7 5.5 42 36-77 3-45 (201)
52 4b4t_H 26S protease regulatory 97.5 0.00016 5.3E-09 61.0 6.8 47 31-77 209-266 (467)
53 4b4t_J 26S protease regulatory 97.5 0.00013 4.4E-09 60.5 6.1 47 31-77 148-205 (405)
54 3c8u_A Fructokinase; YP_612366 97.5 8.8E-05 3E-09 55.5 4.7 38 40-77 8-45 (208)
55 1lv7_A FTSH; alpha/beta domain 97.5 7.1E-05 2.4E-09 57.7 4.1 48 30-77 11-68 (257)
56 2qgz_A Helicase loader, putati 97.5 0.00013 4.6E-09 58.2 5.8 38 40-77 137-175 (308)
57 1ofh_A ATP-dependent HSL prote 97.5 5.7E-05 1.9E-09 59.3 3.4 47 31-77 15-73 (310)
58 1in4_A RUVB, holliday junction 97.5 6E-05 2.1E-09 60.7 3.6 47 31-77 25-74 (334)
59 3ec2_A DNA replication protein 97.5 6.8E-05 2.3E-09 54.7 3.5 41 37-77 20-61 (180)
60 2chq_A Replication factor C sm 97.5 6.2E-05 2.1E-09 59.2 3.4 45 31-77 17-61 (319)
61 2kjq_A DNAA-related protein; s 97.5 8.9E-05 3.1E-09 53.0 3.7 25 53-77 35-59 (149)
62 1sxj_E Activator 1 40 kDa subu 97.4 5.5E-05 1.9E-09 60.7 2.8 44 31-76 14-58 (354)
63 3pxi_A Negative regulator of g 97.4 0.00015 5E-09 64.6 5.1 45 31-77 180-224 (758)
64 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00018 6.3E-09 58.0 4.7 24 54-77 123-146 (331)
65 3hws_A ATP-dependent CLP prote 97.3 0.00016 5.3E-09 58.7 4.4 45 33-77 17-74 (363)
66 1l8q_A Chromosomal replication 97.3 0.00022 7.5E-09 56.8 5.2 38 40-77 23-60 (324)
67 1odf_A YGR205W, hypothetical 3 97.3 0.00024 8.3E-09 56.3 5.3 28 50-77 27-54 (290)
68 3vfd_A Spastin; ATPase, microt 97.3 0.0001 3.6E-09 60.4 3.3 47 31-77 115-171 (389)
69 3cf2_A TER ATPase, transitiona 97.3 0.0003 1E-08 63.2 6.3 47 31-77 204-261 (806)
70 3lw7_A Adenylate kinase relate 97.3 0.00012 4.3E-09 52.2 3.2 20 55-74 2-21 (179)
71 2qp9_X Vacuolar protein sortin 97.3 0.00011 3.8E-09 59.7 3.1 48 30-77 50-107 (355)
72 1fx0_B ATP synthase beta chain 97.3 0.00071 2.4E-08 57.4 7.8 113 55-169 166-303 (498)
73 2c9o_A RUVB-like 1; hexameric 97.3 0.00034 1.1E-08 58.7 5.9 47 31-77 37-86 (456)
74 2ck3_D ATP synthase subunit be 97.3 0.00026 8.9E-09 59.8 5.0 115 55-170 154-291 (482)
75 1qhx_A CPT, protein (chloramph 97.3 0.00013 4.5E-09 52.7 2.8 23 55-77 4-26 (178)
76 3hr8_A Protein RECA; alpha and 97.3 0.00057 1.9E-08 55.8 6.8 62 36-99 42-104 (356)
77 1zp6_A Hypothetical protein AT 97.2 0.00021 7.2E-09 52.2 3.8 24 54-77 9-32 (191)
78 1ixz_A ATP-dependent metallopr 97.2 0.0002 6.9E-09 55.0 3.7 46 31-77 16-72 (254)
79 3hu3_A Transitional endoplasmi 97.2 0.00017 5.9E-09 61.2 3.6 47 31-77 204-261 (489)
80 1sxj_C Activator 1 40 kDa subu 97.2 0.00033 1.1E-08 56.2 5.0 45 31-77 25-69 (340)
81 2x8a_A Nuclear valosin-contain 97.2 0.00034 1.2E-08 54.8 4.9 47 30-77 9-67 (274)
82 3kb2_A SPBC2 prophage-derived 97.2 0.00016 5.5E-09 51.7 2.8 23 55-77 2-24 (173)
83 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00024 8.1E-09 60.1 3.9 114 56-171 153-284 (473)
84 1kgd_A CASK, peripheral plasma 97.2 0.00019 6.6E-09 52.5 2.9 24 54-77 5-28 (180)
85 1ly1_A Polynucleotide kinase; 97.2 0.00024 8.2E-09 51.2 3.4 22 55-76 3-24 (181)
86 1ypw_A Transitional endoplasmi 97.2 0.00022 7.4E-09 64.1 3.6 47 31-77 204-261 (806)
87 1kag_A SKI, shikimate kinase I 97.2 0.00019 6.4E-09 51.7 2.6 23 55-77 5-27 (173)
88 3vaa_A Shikimate kinase, SK; s 97.1 0.00023 7.9E-09 52.8 3.1 24 54-77 25-48 (199)
89 4b4t_M 26S protease regulatory 97.1 0.00035 1.2E-08 58.5 4.4 47 31-77 181-238 (434)
90 1iy2_A ATP-dependent metallopr 97.1 0.00027 9.3E-09 55.1 3.6 47 30-77 39-96 (278)
91 3uie_A Adenylyl-sulfate kinase 97.1 0.00031 1E-08 52.2 3.6 25 53-77 24-48 (200)
92 2r44_A Uncharacterized protein 97.1 0.00036 1.2E-08 55.6 4.1 43 31-77 27-69 (331)
93 3tr0_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 51.9 3.3 23 55-77 8-30 (205)
94 1knq_A Gluconate kinase; ALFA/ 97.1 0.00034 1.1E-08 50.5 3.3 24 54-77 8-31 (175)
95 1uj2_A Uridine-cytidine kinase 97.1 0.00033 1.1E-08 53.9 3.5 26 52-77 20-45 (252)
96 2ga8_A Hypothetical 39.9 kDa p 97.1 0.0007 2.4E-08 55.3 5.4 44 34-77 2-47 (359)
97 4gp7_A Metallophosphoesterase; 97.1 0.00035 1.2E-08 50.7 3.3 23 54-76 9-31 (171)
98 1nks_A Adenylate kinase; therm 97.1 0.00034 1.1E-08 50.9 3.2 23 55-77 2-24 (194)
99 3asz_A Uridine kinase; cytidin 97.1 0.00037 1.3E-08 51.9 3.5 25 53-77 5-29 (211)
100 1uf9_A TT1252 protein; P-loop, 97.1 0.0004 1.4E-08 51.1 3.7 26 52-77 6-31 (203)
101 2gno_A DNA polymerase III, gam 97.1 0.0029 1E-07 50.4 8.9 73 35-110 1-75 (305)
102 3trf_A Shikimate kinase, SK; a 97.0 0.00032 1.1E-08 51.1 2.9 24 54-77 5-28 (185)
103 2rhm_A Putative kinase; P-loop 97.0 0.0004 1.4E-08 50.7 3.4 24 54-77 5-28 (193)
104 2cvh_A DNA repair and recombin 97.0 0.0013 4.5E-08 48.8 6.3 55 43-102 9-63 (220)
105 1um8_A ATP-dependent CLP prote 97.0 0.00059 2E-08 55.5 4.7 46 32-77 22-95 (376)
106 2bdt_A BH3686; alpha-beta prot 97.0 0.00042 1.4E-08 50.7 3.5 22 55-76 3-24 (189)
107 2zr9_A Protein RECA, recombina 97.0 0.0025 8.4E-08 51.8 8.3 64 33-98 39-103 (349)
108 4eun_A Thermoresistant glucoki 97.0 0.00038 1.3E-08 51.7 3.1 24 54-77 29-52 (200)
109 2qt1_A Nicotinamide riboside k 97.0 0.00048 1.6E-08 51.2 3.7 26 52-77 19-44 (207)
110 3t61_A Gluconokinase; PSI-biol 97.0 0.0003 1E-08 52.1 2.5 24 54-77 18-41 (202)
111 1kht_A Adenylate kinase; phosp 97.0 0.0004 1.4E-08 50.5 3.1 23 55-77 4-26 (192)
112 1n0w_A DNA repair protein RAD5 97.0 0.0017 6E-08 48.9 6.9 60 42-101 12-75 (243)
113 3tau_A Guanylate kinase, GMP k 97.0 0.00044 1.5E-08 51.8 3.4 24 54-77 8-31 (208)
114 2j41_A Guanylate kinase; GMP, 97.0 0.00039 1.3E-08 51.3 3.1 24 54-77 6-29 (207)
115 2jaq_A Deoxyguanosine kinase; 97.0 0.0004 1.4E-08 51.0 3.1 22 56-77 2-23 (205)
116 1cke_A CK, MSSA, protein (cyti 97.0 0.00041 1.4E-08 52.1 3.1 23 55-77 6-28 (227)
117 3a00_A Guanylate kinase, GMP k 97.0 0.00032 1.1E-08 51.5 2.4 23 55-77 2-24 (186)
118 1u94_A RECA protein, recombina 97.0 0.0022 7.5E-08 52.3 7.6 64 33-98 41-105 (356)
119 1ukz_A Uridylate kinase; trans 97.0 0.0006 2E-08 50.4 3.9 26 52-77 13-38 (203)
120 2ce7_A Cell division protein F 97.0 0.00072 2.5E-08 57.2 4.8 47 31-77 16-72 (476)
121 1jjv_A Dephospho-COA kinase; P 97.0 0.00053 1.8E-08 50.8 3.5 22 55-76 3-24 (206)
122 2if2_A Dephospho-COA kinase; a 97.0 0.00043 1.5E-08 51.2 3.0 22 55-76 2-23 (204)
123 1tev_A UMP-CMP kinase; ploop, 96.9 0.00054 1.8E-08 49.9 3.4 24 54-77 3-26 (196)
124 3tlx_A Adenylate kinase 2; str 96.9 0.00086 3E-08 51.5 4.6 39 39-77 14-52 (243)
125 1ex7_A Guanylate kinase; subst 96.9 0.00034 1.1E-08 52.0 2.2 23 55-77 2-24 (186)
126 2qor_A Guanylate kinase; phosp 96.9 0.00041 1.4E-08 51.6 2.7 25 53-77 11-35 (204)
127 2ze6_A Isopentenyl transferase 96.9 0.00053 1.8E-08 53.1 3.4 23 55-77 2-24 (253)
128 1zuh_A Shikimate kinase; alpha 96.9 0.00048 1.6E-08 49.4 2.9 25 53-77 6-30 (168)
129 1xp8_A RECA protein, recombina 96.9 0.0038 1.3E-07 51.1 8.6 65 33-99 52-117 (366)
130 3nbx_X ATPase RAVA; AAA+ ATPas 96.9 0.0009 3.1E-08 57.0 5.0 43 31-77 22-64 (500)
131 3vr4_D V-type sodium ATPase su 96.9 0.00048 1.6E-08 57.9 3.2 115 56-170 153-286 (465)
132 3iij_A Coilin-interacting nucl 96.9 0.00041 1.4E-08 50.4 2.5 24 54-77 11-34 (180)
133 2qe7_A ATP synthase subunit al 96.9 0.002 6.8E-08 54.7 6.9 108 56-167 164-289 (502)
134 1lvg_A Guanylate kinase, GMP k 96.9 0.00042 1.4E-08 51.6 2.5 22 55-76 5-26 (198)
135 4a74_A DNA repair and recombin 96.9 0.0021 7.3E-08 47.9 6.5 56 43-98 14-73 (231)
136 1ye8_A Protein THEP1, hypothet 96.9 0.0006 2.1E-08 50.1 3.3 22 56-77 2-23 (178)
137 2c95_A Adenylate kinase 1; tra 96.9 0.00055 1.9E-08 50.0 3.1 24 54-77 9-32 (196)
138 4b4t_I 26S protease regulatory 96.9 0.00083 2.8E-08 56.2 4.4 47 31-77 182-239 (437)
139 3tqc_A Pantothenate kinase; bi 96.9 0.0012 4.1E-08 53.1 5.3 27 51-77 89-115 (321)
140 3aez_A Pantothenate kinase; tr 96.9 0.00071 2.4E-08 54.2 3.8 26 52-77 88-113 (312)
141 1y63_A LMAJ004144AAA protein; 96.9 0.00061 2.1E-08 49.9 3.2 25 53-77 9-33 (184)
142 3cm0_A Adenylate kinase; ATP-b 96.9 0.00066 2.3E-08 49.3 3.4 23 55-77 5-27 (186)
143 3io5_A Recombination and repai 96.9 0.0033 1.1E-07 50.7 7.6 99 41-148 12-122 (333)
144 2yvu_A Probable adenylyl-sulfa 96.9 0.00067 2.3E-08 49.5 3.4 25 53-77 12-36 (186)
145 1znw_A Guanylate kinase, GMP k 96.9 0.00063 2.1E-08 50.7 3.2 24 54-77 20-43 (207)
146 2plr_A DTMP kinase, probable t 96.9 0.00067 2.3E-08 50.1 3.4 23 55-77 5-27 (213)
147 2hf9_A Probable hydrogenase ni 96.9 0.0014 4.8E-08 49.0 5.2 37 39-77 25-61 (226)
148 2jeo_A Uridine-cytidine kinase 96.8 0.0008 2.7E-08 51.5 3.8 25 53-77 24-48 (245)
149 2bbw_A Adenylate kinase 4, AK4 96.8 0.00067 2.3E-08 51.9 3.3 22 54-75 27-48 (246)
150 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00074 2.5E-08 52.3 3.5 24 54-77 4-27 (260)
151 1via_A Shikimate kinase; struc 96.8 0.00062 2.1E-08 49.2 2.9 22 56-77 6-27 (175)
152 1g8p_A Magnesium-chelatase 38 96.8 0.00046 1.6E-08 55.1 2.4 45 31-77 24-68 (350)
153 3e70_C DPA, signal recognition 96.8 0.0012 4.1E-08 53.2 4.8 25 53-77 128-152 (328)
154 3fwy_A Light-independent proto 96.8 0.00077 2.6E-08 54.0 3.6 24 53-76 47-70 (314)
155 1qf9_A UMP/CMP kinase, protein 96.8 0.00071 2.4E-08 49.1 3.2 24 54-77 6-29 (194)
156 1fx0_A ATP synthase alpha chai 96.8 0.0012 4.2E-08 56.1 5.0 112 56-171 165-294 (507)
157 3t15_A Ribulose bisphosphate c 96.8 0.00053 1.8E-08 54.2 2.6 26 52-77 34-59 (293)
158 1gvn_B Zeta; postsegregational 96.8 0.0016 5.4E-08 51.4 5.3 25 53-77 32-56 (287)
159 2bwj_A Adenylate kinase 5; pho 96.8 0.00069 2.4E-08 49.6 3.0 24 54-77 12-35 (199)
160 2pbr_A DTMP kinase, thymidylat 96.8 0.00073 2.5E-08 49.2 3.1 22 56-77 2-23 (195)
161 1e6c_A Shikimate kinase; phosp 96.8 0.00055 1.9E-08 49.1 2.4 23 55-77 3-25 (173)
162 3p32_A Probable GTPase RV1496/ 96.8 0.0019 6.4E-08 52.4 5.7 37 40-76 65-101 (355)
163 1a5t_A Delta prime, HOLB; zinc 96.8 0.006 2.1E-07 48.9 8.7 40 37-77 8-47 (334)
164 2pt5_A Shikimate kinase, SK; a 96.8 0.0008 2.7E-08 48.0 3.1 22 56-77 2-23 (168)
165 4e22_A Cytidylate kinase; P-lo 96.8 0.0008 2.7E-08 51.9 3.3 23 54-76 27-49 (252)
166 2r9v_A ATP synthase subunit al 96.8 0.0024 8.1E-08 54.4 6.4 108 56-167 177-302 (515)
167 2grj_A Dephospho-COA kinase; T 96.8 0.00096 3.3E-08 49.7 3.6 26 52-77 10-35 (192)
168 2cdn_A Adenylate kinase; phosp 96.8 0.00098 3.3E-08 49.2 3.6 25 53-77 19-43 (201)
169 2wsm_A Hydrogenase expression/ 96.7 0.0011 3.7E-08 49.4 3.8 41 35-77 13-53 (221)
170 1z6g_A Guanylate kinase; struc 96.7 0.00069 2.4E-08 51.2 2.7 24 54-77 23-46 (218)
171 2iyv_A Shikimate kinase, SK; t 96.7 0.00079 2.7E-08 48.9 2.8 22 56-77 4-25 (184)
172 1zu4_A FTSY; GTPase, signal re 96.7 0.0022 7.4E-08 51.5 5.6 25 53-77 104-128 (320)
173 3ney_A 55 kDa erythrocyte memb 96.7 0.00085 2.9E-08 50.3 2.9 25 53-77 18-42 (197)
174 1nn5_A Similar to deoxythymidy 96.7 0.00089 3E-08 49.6 3.1 24 54-77 9-32 (215)
175 2vli_A Antibiotic resistance p 96.7 0.00054 1.8E-08 49.6 1.8 24 54-77 5-28 (183)
176 2pez_A Bifunctional 3'-phospho 96.7 0.0011 3.9E-08 48.0 3.5 24 54-77 5-28 (179)
177 2ehv_A Hypothetical protein PH 96.7 0.00099 3.4E-08 50.4 3.3 23 54-76 30-52 (251)
178 2z0h_A DTMP kinase, thymidylat 96.7 0.00096 3.3E-08 48.8 3.1 22 56-77 2-23 (197)
179 2f6r_A COA synthase, bifunctio 96.7 0.0012 4.1E-08 51.8 3.8 24 53-76 74-97 (281)
180 1rj9_A FTSY, signal recognitio 96.7 0.0011 3.7E-08 52.9 3.5 25 53-77 101-125 (304)
181 1s96_A Guanylate kinase, GMP k 96.7 0.00097 3.3E-08 50.6 3.1 24 54-77 16-39 (219)
182 2p5t_B PEZT; postsegregational 96.7 0.0017 5.7E-08 50.1 4.5 25 53-77 31-55 (253)
183 1v5w_A DMC1, meiotic recombina 96.7 0.0064 2.2E-07 49.1 8.1 61 43-103 111-175 (343)
184 1vht_A Dephospho-COA kinase; s 96.7 0.0012 4.2E-08 49.3 3.7 23 54-76 4-26 (218)
185 1g41_A Heat shock protein HSLU 96.7 0.0013 4.3E-08 55.3 4.0 47 31-77 15-73 (444)
186 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0013 4.5E-08 55.9 4.2 50 28-77 28-87 (499)
187 1htw_A HI0065; nucleotide-bind 96.7 0.0013 4.3E-08 47.5 3.5 25 53-77 32-56 (158)
188 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.8E-08 48.7 3.3 23 55-77 5-27 (204)
189 2wwf_A Thymidilate kinase, put 96.7 0.00098 3.4E-08 49.3 2.9 24 54-77 10-33 (212)
190 3pxi_A Negative regulator of g 96.7 0.0016 5.6E-08 57.8 4.8 47 31-77 491-544 (758)
191 3oaa_A ATP synthase subunit al 96.6 0.0032 1.1E-07 53.5 6.3 109 56-168 164-290 (513)
192 1gtv_A TMK, thymidylate kinase 96.6 0.00043 1.5E-08 51.4 0.9 22 56-77 2-23 (214)
193 1xjc_A MOBB protein homolog; s 96.6 0.0011 3.7E-08 48.5 3.0 25 53-77 3-27 (169)
194 3bh0_A DNAB-like replicative h 96.6 0.0099 3.4E-07 47.3 8.8 64 40-108 55-118 (315)
195 1zd8_A GTP:AMP phosphotransfer 96.6 0.001 3.4E-08 50.2 2.8 24 54-77 7-30 (227)
196 1sq5_A Pantothenate kinase; P- 96.6 0.0013 4.6E-08 52.2 3.7 26 52-77 78-103 (308)
197 3tif_A Uncharacterized ABC tra 96.6 0.0012 4E-08 50.7 3.1 24 54-77 31-54 (235)
198 2xxa_A Signal recognition part 96.6 0.0059 2E-07 51.0 7.6 39 39-77 78-123 (433)
199 1aky_A Adenylate kinase; ATP:A 96.6 0.0012 4.1E-08 49.5 3.1 24 54-77 4-27 (220)
200 2onk_A Molybdate/tungstate ABC 96.6 0.0013 4.3E-08 50.7 3.2 23 55-77 25-47 (240)
201 1m7g_A Adenylylsulfate kinase; 96.6 0.0015 5.2E-08 48.7 3.6 24 54-77 25-48 (211)
202 2z43_A DNA repair and recombin 96.6 0.0046 1.6E-07 49.4 6.6 68 41-109 94-165 (324)
203 1vma_A Cell division protein F 96.6 0.0025 8.5E-08 50.9 5.0 39 39-77 83-127 (306)
204 3ake_A Cytidylate kinase; CMP 96.6 0.0013 4.3E-08 48.5 3.1 22 56-77 4-25 (208)
205 3lnc_A Guanylate kinase, GMP k 96.6 0.00081 2.8E-08 50.9 2.0 23 55-77 28-51 (231)
206 2pcj_A ABC transporter, lipopr 96.6 0.0012 4.2E-08 50.1 3.1 23 55-77 31-53 (224)
207 3ice_A Transcription terminati 96.6 0.0012 4E-08 54.7 3.1 91 55-155 175-280 (422)
208 3fb4_A Adenylate kinase; psych 96.6 0.0013 4.4E-08 49.0 3.1 22 56-77 2-23 (216)
209 1j8m_F SRP54, signal recogniti 96.6 0.0026 9E-08 50.5 5.0 24 54-77 98-121 (297)
210 2c61_A A-type ATP synthase non 96.5 0.002 6.9E-08 54.3 4.4 112 56-167 154-284 (469)
211 3b9q_A Chloroplast SRP recepto 96.5 0.0017 5.9E-08 51.7 3.8 25 53-77 99-123 (302)
212 3gqb_B V-type ATP synthase bet 96.5 0.00093 3.2E-08 56.2 2.3 115 56-170 149-289 (464)
213 2i3b_A HCR-ntpase, human cance 96.5 0.0013 4.4E-08 48.8 2.7 22 56-77 3-24 (189)
214 3dl0_A Adenylate kinase; phosp 96.5 0.0015 5.1E-08 48.7 3.1 22 56-77 2-23 (216)
215 1b0u_A Histidine permease; ABC 96.5 0.0015 5.1E-08 50.9 3.2 24 54-77 32-55 (262)
216 2cbz_A Multidrug resistance-as 96.5 0.0015 5.2E-08 50.1 3.1 24 54-77 31-54 (237)
217 3k1j_A LON protease, ATP-depen 96.5 0.0047 1.6E-07 53.6 6.5 42 32-77 42-83 (604)
218 1zak_A Adenylate kinase; ATP:A 96.5 0.0012 4.1E-08 49.6 2.5 24 54-77 5-28 (222)
219 3gfo_A Cobalt import ATP-bindi 96.5 0.0016 5.5E-08 51.2 3.2 23 55-77 35-57 (275)
220 1tue_A Replication protein E1; 96.5 0.0024 8.1E-08 48.4 3.9 41 36-77 41-81 (212)
221 1ji0_A ABC transporter; ATP bi 96.4 0.0017 5.7E-08 49.9 3.1 23 55-77 33-55 (240)
222 4g1u_C Hemin import ATP-bindin 96.4 0.0017 5.9E-08 50.7 3.2 23 55-77 38-60 (266)
223 2f1r_A Molybdopterin-guanine d 96.4 0.00092 3.2E-08 48.9 1.5 23 55-77 3-25 (171)
224 1g6h_A High-affinity branched- 96.4 0.0017 5.8E-08 50.4 3.1 23 55-77 34-56 (257)
225 1mv5_A LMRA, multidrug resista 96.4 0.0019 6.6E-08 49.6 3.4 24 54-77 28-51 (243)
226 3m6a_A ATP-dependent protease 96.4 0.0027 9.3E-08 54.5 4.6 46 32-77 82-131 (543)
227 3b85_A Phosphate starvation-in 96.4 0.0014 4.6E-08 49.4 2.5 23 55-77 23-45 (208)
228 2qi9_C Vitamin B12 import ATP- 96.4 0.0031 1.1E-07 48.8 4.5 23 55-77 27-49 (249)
229 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0019 6.4E-08 50.0 3.2 23 55-77 30-52 (250)
230 2pze_A Cystic fibrosis transme 96.4 0.0019 6.4E-08 49.3 3.2 23 55-77 35-57 (229)
231 3nwj_A ATSK2; P loop, shikimat 96.4 0.0013 4.4E-08 51.0 2.3 23 55-77 49-71 (250)
232 2olj_A Amino acid ABC transpor 96.4 0.0018 6.3E-08 50.5 3.2 24 54-77 50-73 (263)
233 2px0_A Flagellar biosynthesis 96.4 0.0017 5.9E-08 51.5 3.1 25 53-77 104-128 (296)
234 2yhs_A FTSY, cell division pro 96.4 0.0043 1.5E-07 52.8 5.6 25 53-77 292-316 (503)
235 2ff7_A Alpha-hemolysin translo 96.4 0.0019 6.5E-08 49.9 3.1 23 55-77 36-58 (247)
236 3dm5_A SRP54, signal recogniti 96.4 0.014 4.9E-07 48.8 8.7 25 53-77 99-123 (443)
237 3umf_A Adenylate kinase; rossm 96.4 0.0025 8.4E-08 48.4 3.7 26 52-77 27-52 (217)
238 2zu0_C Probable ATP-dependent 96.4 0.0021 7E-08 50.2 3.3 24 54-77 46-69 (267)
239 1vpl_A ABC transporter, ATP-bi 96.4 0.0021 7E-08 50.0 3.2 24 54-77 41-64 (256)
240 1sgw_A Putative ABC transporte 96.4 0.0017 5.8E-08 49.2 2.6 23 55-77 36-58 (214)
241 2ghi_A Transport protein; mult 96.3 0.002 7E-08 50.1 3.1 24 54-77 46-69 (260)
242 1r6b_X CLPA protein; AAA+, N-t 96.3 0.005 1.7E-07 54.6 6.0 47 31-77 458-511 (758)
243 2i1q_A DNA repair and recombin 96.3 0.0094 3.2E-07 47.3 7.1 68 41-109 85-166 (322)
244 3d3q_A TRNA delta(2)-isopenten 96.3 0.0021 7.3E-08 52.1 3.3 23 55-77 8-30 (340)
245 1pzn_A RAD51, DNA repair and r 96.3 0.0074 2.5E-07 48.9 6.5 57 43-99 120-180 (349)
246 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0022 7.6E-08 47.7 3.2 24 54-77 23-46 (235)
247 2ixe_A Antigen peptide transpo 96.3 0.0021 7E-08 50.4 3.1 24 54-77 45-68 (271)
248 1np6_A Molybdopterin-guanine d 96.3 0.0021 7.2E-08 47.1 3.0 24 54-77 6-29 (174)
249 2og2_A Putative signal recogni 96.3 0.0026 8.9E-08 51.9 3.8 25 53-77 156-180 (359)
250 3kl4_A SRP54, signal recogniti 96.3 0.0037 1.3E-07 52.3 4.8 25 53-77 96-120 (433)
251 2ck3_A ATP synthase subunit al 96.3 0.004 1.4E-07 53.0 5.0 112 56-167 164-297 (510)
252 1svm_A Large T antigen; AAA+ f 96.3 0.0038 1.3E-07 51.3 4.7 26 52-77 167-192 (377)
253 1a7j_A Phosphoribulokinase; tr 96.3 0.00096 3.3E-08 52.8 1.1 25 53-77 4-28 (290)
254 2yz2_A Putative ABC transporte 96.3 0.0022 7.4E-08 50.1 3.1 23 55-77 34-56 (266)
255 1ltq_A Polynucleotide kinase; 96.3 0.0023 8E-08 50.1 3.4 23 55-77 3-25 (301)
256 2ihy_A ABC transporter, ATP-bi 96.3 0.0023 7.7E-08 50.4 3.2 23 55-77 48-70 (279)
257 1oix_A RAS-related protein RAB 96.3 0.0024 8.2E-08 46.7 3.1 24 54-77 29-52 (191)
258 1yrb_A ATP(GTP)binding protein 96.3 0.0028 9.5E-08 48.5 3.6 25 53-77 13-37 (262)
259 3be4_A Adenylate kinase; malar 96.3 0.0019 6.5E-08 48.4 2.6 23 55-77 6-28 (217)
260 3jvv_A Twitching mobility prot 96.3 0.0065 2.2E-07 49.5 5.9 24 54-77 123-146 (356)
261 2xb4_A Adenylate kinase; ATP-b 96.3 0.0024 8.3E-08 48.1 3.1 22 56-77 2-23 (223)
262 2nq2_C Hypothetical ABC transp 96.3 0.0024 8.1E-08 49.5 3.1 23 55-77 32-54 (253)
263 1u0j_A DNA replication protein 96.3 0.0046 1.6E-07 48.4 4.8 35 43-77 93-127 (267)
264 1e4v_A Adenylate kinase; trans 96.3 0.0021 7.2E-08 48.0 2.7 22 56-77 2-23 (214)
265 2wji_A Ferrous iron transport 96.3 0.0036 1.2E-07 44.5 3.8 23 55-77 4-26 (165)
266 3r20_A Cytidylate kinase; stru 96.3 0.0025 8.7E-08 48.9 3.1 24 54-77 9-32 (233)
267 2vp4_A Deoxynucleoside kinase; 96.3 0.0025 8.6E-08 48.3 3.1 26 52-77 18-43 (230)
268 2zej_A Dardarin, leucine-rich 96.2 0.0025 8.7E-08 46.1 3.0 22 56-77 4-25 (184)
269 4eaq_A DTMP kinase, thymidylat 96.2 0.0049 1.7E-07 46.9 4.7 25 53-77 25-49 (229)
270 2f9l_A RAB11B, member RAS onco 96.2 0.0027 9.1E-08 46.6 3.0 24 54-77 5-28 (199)
271 3zvl_A Bifunctional polynucleo 96.2 0.0027 9.1E-08 52.7 3.3 26 52-77 256-281 (416)
272 2eyu_A Twitching motility prot 96.2 0.0029 9.8E-08 49.3 3.3 25 53-77 24-48 (261)
273 2ged_A SR-beta, signal recogni 96.2 0.0056 1.9E-07 44.3 4.7 25 53-77 47-71 (193)
274 1ak2_A Adenylate kinase isoenz 96.2 0.0029 1E-07 47.9 3.2 24 54-77 16-39 (233)
275 3a8t_A Adenylate isopentenyltr 96.2 0.0038 1.3E-07 50.5 4.0 24 54-77 40-63 (339)
276 1q3t_A Cytidylate kinase; nucl 96.2 0.003 1E-07 48.0 3.2 26 52-77 14-39 (236)
277 3end_A Light-independent proto 96.2 0.0034 1.2E-07 49.5 3.6 26 52-77 39-64 (307)
278 2dr3_A UPF0273 protein PH0284; 96.2 0.0032 1.1E-07 47.4 3.4 39 54-94 23-61 (247)
279 2dyk_A GTP-binding protein; GT 96.2 0.0038 1.3E-07 43.5 3.5 23 55-77 2-24 (161)
280 1tq4_A IIGP1, interferon-induc 96.2 0.0033 1.1E-07 52.3 3.6 24 53-76 68-91 (413)
281 2wjg_A FEOB, ferrous iron tran 96.1 0.0043 1.5E-07 44.6 3.8 24 54-77 7-30 (188)
282 1qvr_A CLPB protein; coiled co 96.1 0.0065 2.2E-07 54.8 5.7 46 32-77 559-611 (854)
283 2v9p_A Replication protein E1; 96.1 0.0031 1.1E-07 50.3 3.2 24 53-76 125-148 (305)
284 3crm_A TRNA delta(2)-isopenten 96.1 0.0034 1.2E-07 50.5 3.4 23 55-77 6-28 (323)
285 2pjz_A Hypothetical protein ST 96.1 0.0033 1.1E-07 49.1 3.2 23 55-77 31-53 (263)
286 2ce2_X GTPase HRAS; signaling 96.1 0.0032 1.1E-07 43.9 2.8 23 56-78 5-27 (166)
287 3sop_A Neuronal-specific septi 96.1 0.003 1E-07 49.4 2.9 22 56-77 4-25 (270)
288 1nlf_A Regulatory protein REPA 96.1 0.0033 1.1E-07 49.0 3.1 24 54-77 30-53 (279)
289 3exa_A TRNA delta(2)-isopenten 96.1 0.0041 1.4E-07 50.0 3.6 24 54-77 3-26 (322)
290 1ls1_A Signal recognition part 96.1 0.0042 1.4E-07 49.2 3.7 25 53-77 97-121 (295)
291 2v3c_C SRP54, signal recogniti 96.1 0.0035 1.2E-07 52.4 3.4 25 53-77 98-122 (432)
292 1fzq_A ADP-ribosylation factor 96.1 0.0055 1.9E-07 44.2 4.1 26 52-77 14-39 (181)
293 1cr0_A DNA primase/helicase; R 96.1 0.0034 1.2E-07 49.2 3.1 24 54-77 35-58 (296)
294 2ocp_A DGK, deoxyguanosine kin 96.1 0.004 1.4E-07 47.3 3.4 24 54-77 2-25 (241)
295 3nh6_A ATP-binding cassette SU 96.0 0.0028 9.5E-08 50.6 2.5 24 54-77 80-103 (306)
296 2j37_W Signal recognition part 96.0 0.0068 2.3E-07 51.6 5.0 24 53-76 100-123 (504)
297 2nzj_A GTP-binding protein REM 96.0 0.0042 1.5E-07 43.9 3.2 25 54-78 4-28 (175)
298 3lda_A DNA repair protein RAD5 96.0 0.01 3.6E-07 49.0 6.0 68 41-109 165-236 (400)
299 3con_A GTPase NRAS; structural 96.0 0.0039 1.3E-07 45.0 3.0 24 55-78 22-45 (190)
300 1cp2_A CP2, nitrogenase iron p 96.0 0.0045 1.5E-07 47.6 3.4 23 55-77 2-24 (269)
301 2bbs_A Cystic fibrosis transme 96.0 0.0039 1.3E-07 49.4 3.0 24 54-77 64-87 (290)
302 3fvq_A Fe(3+) IONS import ATP- 96.0 0.004 1.4E-07 50.9 3.1 23 55-77 31-53 (359)
303 2lkc_A Translation initiation 96.0 0.0079 2.7E-07 42.7 4.4 25 53-77 7-31 (178)
304 2afh_E Nitrogenase iron protei 95.9 0.005 1.7E-07 48.0 3.6 24 54-77 2-25 (289)
305 4edh_A DTMP kinase, thymidylat 95.9 0.013 4.3E-07 44.2 5.6 24 54-77 6-29 (213)
306 1lw7_A Transcriptional regulat 95.9 0.0047 1.6E-07 50.1 3.4 24 54-77 170-193 (365)
307 1u8z_A RAS-related protein RAL 95.9 0.0045 1.5E-07 43.2 3.0 24 55-78 5-28 (168)
308 3tui_C Methionine import ATP-b 95.9 0.0045 1.5E-07 50.7 3.3 24 54-77 54-77 (366)
309 1z2a_A RAS-related protein RAB 95.9 0.0058 2E-07 42.8 3.6 24 54-77 5-28 (168)
310 1nij_A Hypothetical protein YJ 95.9 0.0041 1.4E-07 49.6 3.0 25 53-77 3-27 (318)
311 2p67_A LAO/AO transport system 95.9 0.011 3.7E-07 47.6 5.6 26 51-76 53-78 (341)
312 3ez2_A Plasmid partition prote 95.9 0.027 9.3E-07 46.0 8.0 28 50-77 104-132 (398)
313 2erx_A GTP-binding protein DI- 95.9 0.0052 1.8E-07 43.2 3.2 23 55-77 4-26 (172)
314 2qm8_A GTPase/ATPase; G protei 95.9 0.0097 3.3E-07 47.9 5.2 34 43-76 44-77 (337)
315 1p5z_B DCK, deoxycytidine kina 95.9 0.0031 1.1E-07 48.6 2.1 25 53-77 23-47 (263)
316 3def_A T7I23.11 protein; chlor 95.9 0.014 4.8E-07 44.9 5.9 37 42-78 24-60 (262)
317 1z47_A CYSA, putative ABC-tran 95.9 0.0048 1.6E-07 50.3 3.2 23 55-77 42-64 (355)
318 3foz_A TRNA delta(2)-isopenten 95.9 0.0064 2.2E-07 48.7 3.8 25 53-77 9-33 (316)
319 3q85_A GTP-binding protein REM 95.9 0.0055 1.9E-07 43.1 3.2 23 55-77 3-25 (169)
320 1z08_A RAS-related protein RAB 95.9 0.0051 1.8E-07 43.2 3.0 24 54-77 6-29 (170)
321 1h65_A Chloroplast outer envel 95.9 0.014 4.9E-07 45.1 5.8 32 47-78 32-63 (270)
322 1ek0_A Protein (GTP-binding pr 95.9 0.0051 1.8E-07 43.1 3.0 23 56-78 5-27 (170)
323 1c1y_A RAS-related protein RAP 95.8 0.0051 1.7E-07 43.1 3.0 22 56-77 5-26 (167)
324 3q72_A GTP-binding protein RAD 95.8 0.0048 1.6E-07 43.3 2.8 22 56-77 4-25 (166)
325 3kta_A Chromosome segregation 95.8 0.0055 1.9E-07 44.2 3.2 21 56-76 28-48 (182)
326 1z0j_A RAB-22, RAS-related pro 95.8 0.0054 1.8E-07 43.1 3.0 24 55-78 7-30 (170)
327 1kao_A RAP2A; GTP-binding prot 95.8 0.0054 1.9E-07 42.8 3.0 23 55-77 4-26 (167)
328 2yyz_A Sugar ABC transporter, 95.8 0.0052 1.8E-07 50.2 3.2 24 54-77 29-52 (359)
329 3rlf_A Maltose/maltodextrin im 95.8 0.0053 1.8E-07 50.5 3.3 23 55-77 30-52 (381)
330 2it1_A 362AA long hypothetical 95.8 0.0053 1.8E-07 50.1 3.3 24 54-77 29-52 (362)
331 2gj8_A MNME, tRNA modification 95.8 0.0055 1.9E-07 43.9 3.1 23 55-77 5-27 (172)
332 1ky3_A GTP-binding protein YPT 95.8 0.0056 1.9E-07 43.5 3.0 26 53-78 7-32 (182)
333 1g29_1 MALK, maltose transport 95.8 0.0054 1.8E-07 50.3 3.2 23 55-77 30-52 (372)
334 2qmh_A HPR kinase/phosphorylas 95.8 0.0065 2.2E-07 45.7 3.4 23 55-77 35-57 (205)
335 1v43_A Sugar-binding transport 95.8 0.0056 1.9E-07 50.2 3.3 24 54-77 37-60 (372)
336 1svi_A GTP-binding protein YSX 95.8 0.0067 2.3E-07 43.9 3.4 25 53-77 22-46 (195)
337 3hjn_A DTMP kinase, thymidylat 95.8 0.013 4.5E-07 43.5 5.1 49 56-106 2-50 (197)
338 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0053 1.8E-07 44.2 2.8 24 54-77 7-30 (184)
339 3tw8_B RAS-related protein RAB 95.7 0.0074 2.5E-07 42.8 3.5 26 53-78 8-33 (181)
340 3t1o_A Gliding protein MGLA; G 95.7 0.0058 2E-07 44.0 3.0 24 54-77 14-37 (198)
341 3d31_A Sulfate/molybdate ABC t 95.7 0.0047 1.6E-07 50.2 2.6 23 55-77 27-49 (348)
342 3cmu_A Protein RECA, recombina 95.7 0.016 5.6E-07 56.6 6.7 57 42-100 1414-1471(2050)
343 1nrj_B SR-beta, signal recogni 95.7 0.0068 2.3E-07 44.8 3.3 26 53-78 11-36 (218)
344 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0063 2.2E-07 43.1 3.0 24 54-77 7-30 (177)
345 3sr0_A Adenylate kinase; phosp 95.7 0.0062 2.1E-07 45.7 3.1 22 56-77 2-23 (206)
346 3pqc_A Probable GTP-binding pr 95.7 0.0077 2.6E-07 43.3 3.5 26 53-78 22-47 (195)
347 3ihw_A Centg3; RAS, centaurin, 95.7 0.0064 2.2E-07 44.1 3.0 24 54-77 20-43 (184)
348 2fn4_A P23, RAS-related protei 95.7 0.0092 3.1E-07 42.3 3.9 26 53-78 8-33 (181)
349 2hxs_A RAB-26, RAS-related pro 95.7 0.0067 2.3E-07 43.0 3.1 24 54-77 6-29 (178)
350 1r2q_A RAS-related protein RAB 95.7 0.0065 2.2E-07 42.5 3.0 23 55-77 7-29 (170)
351 2cxx_A Probable GTP-binding pr 95.7 0.0061 2.1E-07 43.8 2.8 23 56-78 3-25 (190)
352 1z0f_A RAB14, member RAS oncog 95.7 0.0066 2.3E-07 43.0 3.0 26 53-78 14-39 (179)
353 1g16_A RAS-related protein SEC 95.7 0.0063 2.1E-07 42.7 2.8 23 55-77 4-26 (170)
354 3kkq_A RAS-related protein M-R 95.7 0.0086 2.9E-07 42.8 3.6 26 53-78 17-42 (183)
355 3c5c_A RAS-like protein 12; GD 95.7 0.0068 2.3E-07 43.9 3.0 25 54-78 21-45 (187)
356 2h92_A Cytidylate kinase; ross 95.6 0.0055 1.9E-07 45.6 2.6 23 55-77 4-26 (219)
357 1pui_A ENGB, probable GTP-bind 95.6 0.0044 1.5E-07 45.5 2.0 25 53-77 25-49 (210)
358 4dsu_A GTPase KRAS, isoform 2B 95.6 0.0069 2.4E-07 43.3 3.0 24 55-78 5-28 (189)
359 2yv5_A YJEQ protein; hydrolase 95.6 0.0099 3.4E-07 47.1 4.1 32 40-77 156-187 (302)
360 1r8s_A ADP-ribosylation factor 95.6 0.0069 2.3E-07 42.4 2.8 21 57-77 3-23 (164)
361 1oxx_K GLCV, glucose, ABC tran 95.6 0.0042 1.4E-07 50.6 1.9 23 55-77 32-54 (353)
362 2a9k_A RAS-related protein RAL 95.6 0.0072 2.5E-07 43.1 3.0 25 54-78 18-42 (187)
363 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0073 2.5E-07 43.1 3.0 23 55-77 6-28 (186)
364 2bme_A RAB4A, RAS-related prot 95.6 0.0069 2.4E-07 43.4 2.8 26 53-78 9-34 (186)
365 3bc1_A RAS-related protein RAB 95.6 0.0074 2.5E-07 43.3 3.0 25 53-77 10-34 (195)
366 1f6b_A SAR1; gtpases, N-termin 95.6 0.0056 1.9E-07 44.9 2.4 24 54-77 25-48 (198)
367 3llu_A RAS-related GTP-binding 95.6 0.0076 2.6E-07 44.0 3.1 24 54-77 20-43 (196)
368 3gd7_A Fusion complex of cysti 95.6 0.007 2.4E-07 49.9 3.1 24 54-77 47-70 (390)
369 2efe_B Small GTP-binding prote 95.6 0.0078 2.7E-07 42.8 3.0 24 54-77 12-35 (181)
370 1m2o_B GTP-binding protein SAR 95.5 0.0072 2.5E-07 44.0 2.8 23 55-77 24-46 (190)
371 3mfy_A V-type ATP synthase alp 95.5 0.014 5E-07 50.2 5.0 108 55-166 228-358 (588)
372 1upt_A ARL1, ADP-ribosylation 95.5 0.011 3.7E-07 41.5 3.7 24 54-77 7-30 (171)
373 4bas_A ADP-ribosylation factor 95.5 0.01 3.5E-07 43.0 3.6 27 52-78 15-41 (199)
374 2oil_A CATX-8, RAS-related pro 95.5 0.0077 2.6E-07 43.6 3.0 26 53-78 24-49 (193)
375 2qnr_A Septin-2, protein NEDD5 95.5 0.0057 2E-07 48.5 2.4 22 56-77 20-41 (301)
376 3t5g_A GTP-binding protein RHE 95.5 0.0097 3.3E-07 42.4 3.4 24 54-77 6-29 (181)
377 3clv_A RAB5 protein, putative; 95.5 0.008 2.7E-07 43.3 3.0 25 54-78 7-31 (208)
378 2y8e_A RAB-protein 6, GH09086P 95.5 0.0076 2.6E-07 42.7 2.8 23 55-77 15-37 (179)
379 3bwd_D RAC-like GTP-binding pr 95.5 0.008 2.7E-07 42.8 3.0 23 55-77 9-31 (182)
380 2iwr_A Centaurin gamma 1; ANK 95.5 0.0059 2E-07 43.5 2.2 23 55-77 8-30 (178)
381 3eph_A TRNA isopentenyltransfe 95.5 0.0078 2.7E-07 49.9 3.2 23 55-77 3-25 (409)
382 2bov_A RAla, RAS-related prote 95.5 0.008 2.7E-07 43.7 3.0 26 53-78 13-38 (206)
383 2atv_A RERG, RAS-like estrogen 95.5 0.0083 2.9E-07 43.6 3.0 24 54-77 28-51 (196)
384 2www_A Methylmalonic aciduria 95.5 0.01 3.6E-07 47.9 3.9 24 53-76 73-96 (349)
385 2qu8_A Putative nucleolar GTP- 95.5 0.012 4.2E-07 44.0 4.0 27 52-78 27-53 (228)
386 1zbd_A Rabphilin-3A; G protein 95.5 0.0091 3.1E-07 43.6 3.2 25 54-78 8-32 (203)
387 2g6b_A RAS-related protein RAB 95.5 0.0087 3E-07 42.5 3.0 25 54-78 10-34 (180)
388 3ld9_A DTMP kinase, thymidylat 95.4 0.018 6.2E-07 43.8 4.8 25 53-77 20-44 (223)
389 1vg8_A RAS-related protein RAB 95.4 0.011 3.9E-07 43.0 3.6 26 53-78 7-32 (207)
390 2ewv_A Twitching motility prot 95.4 0.0098 3.3E-07 48.6 3.5 25 53-77 135-159 (372)
391 3v9p_A DTMP kinase, thymidylat 95.4 0.013 4.5E-07 44.7 4.0 24 54-77 25-48 (227)
392 2gza_A Type IV secretion syste 95.4 0.0068 2.3E-07 49.3 2.5 102 55-162 176-277 (361)
393 3cr8_A Sulfate adenylyltranfer 95.4 0.0068 2.3E-07 52.2 2.7 24 54-77 369-392 (552)
394 2fg5_A RAB-22B, RAS-related pr 95.4 0.0088 3E-07 43.4 2.9 25 54-78 23-47 (192)
395 2q3h_A RAS homolog gene family 95.4 0.0096 3.3E-07 43.3 3.1 26 53-78 19-44 (201)
396 2ffh_A Protein (FFH); SRP54, s 95.4 0.011 3.7E-07 49.3 3.7 25 53-77 97-121 (425)
397 3tkl_A RAS-related protein RAB 95.4 0.0094 3.2E-07 43.0 3.0 26 53-78 15-40 (196)
398 3cbq_A GTP-binding protein REM 95.4 0.0073 2.5E-07 44.2 2.4 23 53-75 22-44 (195)
399 1ega_A Protein (GTP-binding pr 95.4 0.01 3.5E-07 46.9 3.4 25 53-77 7-31 (301)
400 2fh5_B SR-beta, signal recogni 95.4 0.0094 3.2E-07 43.9 3.0 25 54-78 7-31 (214)
401 3iev_A GTP-binding protein ERA 95.4 0.012 4.1E-07 46.7 3.7 28 51-78 7-34 (308)
402 3lxx_A GTPase IMAP family memb 95.4 0.013 4.6E-07 44.2 3.9 26 53-78 28-53 (239)
403 3oes_A GTPase rhebl1; small GT 95.4 0.0091 3.1E-07 43.6 2.8 26 53-78 23-48 (201)
404 1gwn_A RHO-related GTP-binding 95.4 0.0091 3.1E-07 44.2 2.8 26 53-78 27-52 (205)
405 4a1f_A DNAB helicase, replicat 95.3 0.028 9.7E-07 45.4 5.9 69 35-108 28-96 (338)
406 2gf9_A RAS-related protein RAB 95.3 0.01 3.4E-07 42.9 3.0 25 54-78 22-46 (189)
407 1zj6_A ADP-ribosylation factor 95.3 0.026 9E-07 40.5 5.3 25 53-77 15-39 (187)
408 3reg_A RHO-like small GTPase; 95.3 0.01 3.4E-07 43.1 3.0 26 53-78 22-47 (194)
409 3fdi_A Uncharacterized protein 95.3 0.0094 3.2E-07 44.4 2.9 23 55-77 7-29 (201)
410 1zd9_A ADP-ribosylation factor 95.3 0.01 3.5E-07 42.9 3.0 25 54-78 22-46 (188)
411 2axn_A 6-phosphofructo-2-kinas 95.3 0.011 3.9E-07 50.4 3.7 25 53-77 34-58 (520)
412 2a5j_A RAS-related protein RAB 95.3 0.01 3.5E-07 43.0 3.0 25 54-78 21-45 (191)
413 1x3s_A RAS-related protein RAB 95.3 0.01 3.6E-07 42.7 3.0 25 54-78 15-39 (195)
414 2obl_A ESCN; ATPase, hydrolase 95.3 0.0095 3.3E-07 48.3 3.0 23 55-77 72-94 (347)
415 2o52_A RAS-related protein RAB 95.3 0.01 3.5E-07 43.5 2.9 25 53-77 24-48 (200)
416 1z06_A RAS-related protein RAB 95.3 0.011 3.7E-07 42.7 3.0 24 54-77 20-43 (189)
417 2ew1_A RAS-related protein RAB 95.3 0.0099 3.4E-07 43.9 2.8 25 53-77 25-49 (201)
418 1u0l_A Probable GTPase ENGC; p 95.3 0.014 4.8E-07 46.1 3.9 23 55-77 170-192 (301)
419 2il1_A RAB12; G-protein, GDP, 95.3 0.01 3.4E-07 43.2 2.8 25 54-78 26-50 (192)
420 2gf0_A GTP-binding protein DI- 95.3 0.01 3.6E-07 42.9 2.9 24 54-77 8-31 (199)
421 2b6h_A ADP-ribosylation factor 95.3 0.01 3.4E-07 43.3 2.8 24 54-77 29-52 (192)
422 4dzz_A Plasmid partitioning pr 95.3 0.011 3.8E-07 43.3 3.0 23 55-77 2-25 (206)
423 2p5s_A RAS and EF-hand domain 95.3 0.011 3.7E-07 43.2 3.0 25 53-77 27-51 (199)
424 3lv8_A DTMP kinase, thymidylat 95.3 0.021 7.1E-07 43.8 4.7 24 54-77 27-50 (236)
425 1ksh_A ARF-like protein 2; sma 95.3 0.015 5.1E-07 41.7 3.7 26 53-78 17-42 (186)
426 3kjh_A CO dehydrogenase/acetyl 95.2 0.016 5.4E-07 43.6 4.0 40 57-98 3-42 (254)
427 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.0077 2.6E-07 50.7 2.4 24 54-77 138-161 (460)
428 4hlc_A DTMP kinase, thymidylat 95.2 0.015 5.1E-07 43.5 3.8 23 55-77 3-25 (205)
429 1ypw_A Transitional endoplasmi 95.2 0.0047 1.6E-07 55.5 1.1 48 30-77 476-534 (806)
430 3ozx_A RNAse L inhibitor; ATP 95.2 0.01 3.6E-07 50.8 3.2 23 55-77 295-317 (538)
431 2j1l_A RHO-related GTP-binding 95.2 0.011 3.8E-07 43.8 3.0 25 53-77 33-57 (214)
432 4tmk_A Protein (thymidylate ki 95.2 0.024 8.3E-07 42.7 4.9 23 55-77 4-26 (213)
433 2qag_B Septin-6, protein NEDD5 95.2 0.0097 3.3E-07 49.7 2.8 21 57-77 45-65 (427)
434 3dz8_A RAS-related protein RAB 95.2 0.01 3.6E-07 42.9 2.7 24 54-77 23-46 (191)
435 2cjw_A GTP-binding protein GEM 95.2 0.012 4E-07 43.0 3.0 23 54-76 6-28 (192)
436 3k53_A Ferrous iron transport 95.2 0.015 5E-07 45.1 3.7 24 54-77 3-26 (271)
437 2atx_A Small GTP binding prote 95.2 0.012 4E-07 42.6 2.9 24 54-77 18-41 (194)
438 2rcn_A Probable GTPase ENGC; Y 95.2 0.013 4.3E-07 47.9 3.3 23 55-77 216-238 (358)
439 1yqt_A RNAse L inhibitor; ATP- 95.2 0.012 4.1E-07 50.5 3.3 23 55-77 313-335 (538)
440 2bcg_Y Protein YP2, GTP-bindin 95.1 0.011 3.9E-07 43.2 2.8 25 54-78 8-32 (206)
441 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.0083 2.9E-07 48.2 2.2 89 55-157 172-260 (330)
442 1moz_A ARL1, ADP-ribosylation 95.1 0.011 3.6E-07 42.2 2.6 25 53-77 17-41 (183)
443 2q6t_A DNAB replication FORK h 95.1 0.053 1.8E-06 45.1 7.2 65 40-109 187-252 (444)
444 1yqt_A RNAse L inhibitor; ATP- 95.1 0.012 4.1E-07 50.4 3.3 24 54-77 47-70 (538)
445 1mky_A Probable GTP-binding pr 95.1 0.03 1E-06 46.5 5.7 47 32-78 149-204 (439)
446 3gmt_A Adenylate kinase; ssgci 95.1 0.012 4E-07 45.1 2.9 24 54-77 8-31 (230)
447 2h17_A ADP-ribosylation factor 95.1 0.011 3.7E-07 42.4 2.6 24 54-77 21-44 (181)
448 1p9r_A General secretion pathw 95.1 0.026 8.8E-07 46.9 5.1 25 53-77 166-190 (418)
449 2fv8_A H6, RHO-related GTP-bin 95.1 0.012 4.2E-07 43.2 2.9 25 54-78 25-49 (207)
450 2f7s_A C25KG, RAS-related prot 95.1 0.014 4.9E-07 43.0 3.3 25 53-77 24-48 (217)
451 3fkq_A NTRC-like two-domain pr 95.1 0.018 6E-07 46.9 4.1 26 52-77 141-167 (373)
452 3ozx_A RNAse L inhibitor; ATP 95.1 0.013 4.5E-07 50.2 3.4 25 53-77 24-48 (538)
453 3cph_A RAS-related protein SEC 95.1 0.013 4.4E-07 42.9 3.0 24 54-77 20-43 (213)
454 4gzl_A RAS-related C3 botulinu 95.1 0.015 5.2E-07 42.7 3.4 25 54-78 30-54 (204)
455 1bif_A 6-phosphofructo-2-kinas 95.1 0.015 5E-07 48.9 3.5 24 54-77 39-62 (469)
456 2h57_A ADP-ribosylation factor 95.1 0.0098 3.3E-07 43.0 2.2 25 54-78 21-45 (190)
457 2hup_A RAS-related protein RAB 95.0 0.013 4.6E-07 42.9 2.9 25 53-77 28-52 (201)
458 2j0v_A RAC-like GTP-binding pr 95.0 0.013 4.4E-07 43.1 2.8 24 54-77 9-32 (212)
459 2fu5_C RAS-related protein RAB 95.0 0.0079 2.7E-07 43.0 1.6 24 54-77 8-31 (183)
460 2qag_C Septin-7; cell cycle, c 95.0 0.013 4.3E-07 48.8 3.0 21 57-77 34-54 (418)
461 3euj_A Chromosome partition pr 95.0 0.014 4.7E-07 49.5 3.3 23 55-77 30-52 (483)
462 2gco_A H9, RHO-related GTP-bin 95.0 0.014 4.7E-07 42.7 2.8 25 54-78 25-49 (201)
463 1g8f_A Sulfate adenylyltransfe 95.0 0.017 5.7E-07 49.3 3.7 25 53-77 394-418 (511)
464 4dhe_A Probable GTP-binding pr 95.0 0.011 3.6E-07 43.9 2.2 26 53-78 28-53 (223)
465 2dpy_A FLII, flagellum-specifi 95.0 0.013 4.6E-07 48.9 3.0 24 54-77 157-180 (438)
466 2r8r_A Sensor protein; KDPD, P 94.9 0.014 4.8E-07 44.6 2.8 22 56-77 8-29 (228)
467 3q3j_B RHO-related GTP-binding 94.9 0.015 5.1E-07 43.2 3.0 25 54-78 27-51 (214)
468 1m8p_A Sulfate adenylyltransfe 94.9 0.017 5.7E-07 50.0 3.6 25 53-77 395-419 (573)
469 3bk7_A ABC transporter ATP-bin 94.9 0.015 5.1E-07 50.6 3.3 23 55-77 383-405 (607)
470 2x77_A ADP-ribosylation factor 94.9 0.023 7.8E-07 40.9 3.9 25 53-77 21-45 (189)
471 3j16_B RLI1P; ribosome recycli 94.9 0.015 5.2E-07 50.6 3.3 24 54-77 103-126 (608)
472 3j16_B RLI1P; ribosome recycli 94.9 0.015 5.2E-07 50.6 3.3 23 55-77 379-401 (608)
473 2g3y_A GTP-binding protein GEM 94.9 0.018 6.1E-07 43.1 3.2 23 54-76 37-59 (211)
474 2xtp_A GTPase IMAP family memb 94.8 0.022 7.6E-07 43.5 3.8 26 53-78 21-46 (260)
475 1wf3_A GTP-binding protein; GT 94.8 0.019 6.6E-07 45.4 3.4 26 53-78 6-31 (301)
476 1x6v_B Bifunctional 3'-phospho 94.8 0.017 5.7E-07 50.5 3.3 25 53-77 51-75 (630)
477 2orw_A Thymidine kinase; TMTK, 94.8 0.013 4.5E-07 43.0 2.3 23 55-77 4-26 (184)
478 3b60_A Lipid A export ATP-bind 94.8 0.016 5.4E-07 50.0 3.1 24 54-77 369-392 (582)
479 3bk7_A ABC transporter ATP-bin 94.8 0.016 5.5E-07 50.4 3.2 24 54-77 117-140 (607)
480 3f9v_A Minichromosome maintena 94.8 0.0089 3E-07 51.9 1.5 47 31-77 295-350 (595)
481 3io3_A DEHA2D07832P; chaperone 94.8 0.032 1.1E-06 45.2 4.7 24 53-76 17-40 (348)
482 3ch4_B Pmkase, phosphomevalona 94.7 0.025 8.4E-07 42.5 3.7 25 53-77 10-34 (202)
483 3b5x_A Lipid A export ATP-bind 94.7 0.017 5.9E-07 49.8 3.2 24 54-77 369-392 (582)
484 2aka_B Dynamin-1; fusion prote 94.7 0.037 1.3E-06 42.9 4.8 26 53-78 25-50 (299)
485 3t5d_A Septin-7; GTP-binding p 94.7 0.017 6E-07 44.7 2.9 24 55-78 9-32 (274)
486 2zts_A Putative uncharacterize 94.7 0.02 6.8E-07 43.0 3.1 50 53-105 29-78 (251)
487 3lxw_A GTPase IMAP family memb 94.7 0.021 7E-07 43.7 3.2 25 54-78 21-45 (247)
488 4dkx_A RAS-related protein RAB 94.7 0.019 6.6E-07 43.1 3.0 22 56-77 15-36 (216)
489 2j69_A Bacterial dynamin-like 94.6 0.016 5.4E-07 51.2 2.8 45 34-78 49-93 (695)
490 3cpj_B GTP-binding protein YPT 94.6 0.02 6.9E-07 42.6 3.0 25 54-78 13-37 (223)
491 3dzd_A Transcriptional regulat 94.6 0.058 2E-06 43.8 6.0 70 8-77 105-175 (368)
492 3cmu_A Protein RECA, recombina 94.6 0.052 1.8E-06 53.2 6.4 65 32-98 360-425 (2050)
493 1jwy_B Dynamin A GTPase domain 94.6 0.016 5.4E-07 45.5 2.5 27 52-78 22-48 (315)
494 3iqw_A Tail-anchored protein t 94.6 0.042 1.4E-06 44.2 5.1 25 53-77 15-39 (334)
495 3cf2_A TER ATPase, transitiona 94.6 0.019 6.5E-07 51.6 3.1 47 31-77 477-534 (806)
496 3upu_A ATP-dependent DNA helic 94.6 0.048 1.6E-06 45.5 5.4 22 56-77 47-68 (459)
497 3cwq_A Para family chromosome 94.5 0.022 7.5E-07 42.4 3.0 22 56-77 2-24 (209)
498 1f2t_A RAD50 ABC-ATPase; DNA d 94.5 0.029 1E-06 39.6 3.5 22 54-75 23-44 (149)
499 1t9h_A YLOQ, probable GTPase E 94.5 0.0092 3.1E-07 47.6 0.9 23 55-77 174-196 (307)
500 2r6a_A DNAB helicase, replicat 94.5 0.027 9.2E-07 47.0 3.8 49 54-106 203-252 (454)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=3.6e-25 Score=191.00 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=104.3
Q ss_pred eeehHHHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhc--CcCccCcccceEEEEcCCCC--CHHHHHHHHHHH
Q 043562 34 VGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYS--SNYVKHYFDCHAWVQEPYTC--YADQILDIIITF 108 (176)
Q Consensus 34 vG~~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~ll~~il~~ 108 (176)
+||+.++++|.++|... +...++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999764 45689999999999999999999998 56789999999999999985 789999999999
Q ss_pred hCCCCCccccCCCCCCc---hhhhhhhhhCCC-ceEEEecCCCChhhhHHHhcCCCCCCCCCCCccccccCC
Q 043562 109 LMPSSSRMVRADTDNEP---STNMGRPETSTS-QRNIPTRDEYQPEEYTDQRRIPSRYPFPKEREHDLTESR 176 (176)
Q Consensus 109 l~~~~~~~~~~~~~~~~---~~~~~~~~l~~k-r~LlVLDDV~~~~~w~~i~~~~~~~~~~~~~~~~~~~~~ 176 (176)
+............+..+ .....+..|+++ ||||||||||+.+++ .+... .+..+|+|||
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~--------~gs~ilvTTR 273 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQE--------LRLRCLVTTR 273 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHH--------TTCEEEEEES
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccccc--------CCCEEEEEcC
Confidence 97542211111222222 134447888896 999999999998865 22211 4678999998
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.84 E-value=3.8e-21 Score=176.88 Aligned_cols=137 Identities=18% Similarity=0.056 Sum_probs=97.5
Q ss_pred CCCCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCc-cCccc-ceEEEEcCCCCC--HHHHHHH
Q 043562 29 KSRDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYV-KHYFD-CHAWVQEPYTCY--ADQILDI 104 (176)
Q Consensus 29 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~--~~~ll~~ 104 (176)
+...||||+.++++|.++|...+...++|+|+||||+||||||+++|++... ..+|. .++|+++++... ....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 3456999999999999999876667899999999999999999999998533 44565 577999988544 3344666
Q ss_pred HHHHhCCCCCccccCCCCCCc-hhhhhhhhhCCC--ceEEEecCCCChhhhHHHhcCCCCCCCCCCCccccccCC
Q 043562 105 IITFLMPSSSRMVRADTDNEP-STNMGRPETSTS--QRNIPTRDEYQPEEYTDQRRIPSRYPFPKEREHDLTESR 176 (176)
Q Consensus 105 il~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~k--r~LlVLDDV~~~~~w~~i~~~~~~~~~~~~~~~~~~~~~ 176 (176)
++..+......... .....+ .....+..+.++ |+||||||||+.++|..+ +.+..+|+|||
T Consensus 202 ~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----------~~~~~ilvTtR 265 (1249)
T 3sfz_A 202 LCMRLDQEESFSQR-LPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHTTTCTTCSS-CCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----------CSSCEEEEEES
T ss_pred HHHHhhhhcccccC-CCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh----------cCCCEEEEEcC
Confidence 77776543211110 001111 223336666666 999999999999877654 23568999998
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=6.2e-21 Score=172.91 Aligned_cols=132 Identities=16% Similarity=0.080 Sum_probs=99.2
Q ss_pred eeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccc-eEEEEcCCCCCHHHHHHHHHHHhCC
Q 043562 33 MVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDC-HAWVQEPYTCYADQILDIIITFLMP 111 (176)
Q Consensus 33 ~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~ll~~il~~l~~ 111 (176)
.|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|++ ++|+++++.++...++..++..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998643 4789999999999999999999987668889997 8999999999988888888775432
Q ss_pred CCCccccCCCC---CC--ch---hhhhhhhh---CCCceEEEecCCCChhhhHHHhcCCCCCCCCCCCccccccCC
Q 043562 112 SSSRMVRADTD---NE--PS---TNMGRPET---STSQRNIPTRDEYQPEEYTDQRRIPSRYPFPKEREHDLTESR 176 (176)
Q Consensus 112 ~~~~~~~~~~~---~~--~~---~~~~~~~l---~~kr~LlVLDDV~~~~~w~~i~~~~~~~~~~~~~~~~~~~~~ 176 (176)
.... .....+ .. .. ....+..| ++||+||||||||+.+.|+.+. .+.++|+|||
T Consensus 209 i~~~-~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~----------pGSRILVTTR 273 (1221)
T 1vt4_I 209 IDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----------LSCKILLTTR 273 (1221)
T ss_dssp HCSS-STTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH----------SSCCEEEECS
T ss_pred cCcc-cccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC----------CCeEEEEecc
Confidence 1000 000000 00 01 11224433 7899999999999999998752 3568999998
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=157.03 Aligned_cols=136 Identities=18% Similarity=0.064 Sum_probs=92.6
Q ss_pred CCCCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCc-cCccc-ceEEEEcCCCCCHHHHHHHHH
Q 043562 29 KSRDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYV-KHYFD-CHAWVQEPYTCYADQILDIII 106 (176)
Q Consensus 29 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~ll~~il 106 (176)
.+..+|||+.++++|.++|.......++|+|+||||+||||||..+|++..+ ..+|+ .++|++++.. +...++..+.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 3467999999999999999865556899999999999999999999998544 77895 6999998765 3444444443
Q ss_pred ---HHhCCCCCccccCCCCCCc-hhhhhhhhhCC--CceEEEecCCCChhhhHHHhcCCCCCCCCCCCccccccCC
Q 043562 107 ---TFLMPSSSRMVRADTDNEP-STNMGRPETST--SQRNIPTRDEYQPEEYTDQRRIPSRYPFPKEREHDLTESR 176 (176)
Q Consensus 107 ---~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~--kr~LlVLDDV~~~~~w~~i~~~~~~~~~~~~~~~~~~~~~ 176 (176)
..+......... ...+.. ........+.+ +++||||||||+.+.+..+ +.+.++|+|||
T Consensus 201 ~l~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l----------~~~~~ilvTsR 265 (591)
T 1z6t_A 201 NLCTRLDQDESFSQR-LPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----------DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHCSSCCSCSS-CCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT----------CSSCEEEEEES
T ss_pred HHHHHhccccccccC-CCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh----------cCCCeEEEECC
Confidence 333311100000 011111 12223445544 7899999999997665422 23668999987
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.32 E-value=1.8e-12 Score=106.78 Aligned_cols=119 Identities=10% Similarity=-0.000 Sum_probs=78.7
Q ss_pred CCCCCCCCCeeeehHHHHHHHHHH-hc--CC--CCcEEEEE--EcCCCCcHHHHHHHHhcCcCccCc-----ccc-eEEE
Q 043562 24 ISSSSKSRDMVGLDDRMEELLDLL-IE--GP--PQLSAVTI--LDSIGLDKTAFAAEAYSSNYVKHY-----FDC-HAWV 90 (176)
Q Consensus 24 ~~~~~~~~~~vG~~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~~~-----F~~-~~wv 90 (176)
+.+...+..++||+.++++|.++| .. .. .....+.| +|++|+||||||+.+++. .... |.. .+|+
T Consensus 15 ~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 15 FDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp GSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEE
T ss_pred cCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEE
Confidence 333334478999999999999988 42 11 23445555 999999999999999987 4332 232 5788
Q ss_pred EcCCCCCHHHHHHHHHHHhCCCCCccccCCCCCC-chhhhhhhhhC--CCceEEEecCCCC
Q 043562 91 QEPYTCYADQILDIIITFLMPSSSRMVRADTDNE-PSTNMGRPETS--TSQRNIPTRDEYQ 148 (176)
Q Consensus 91 ~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~--~kr~LlVLDDV~~ 148 (176)
++....+...++..++.++.... +...... .........+. +++++|||||++.
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPI----QVRGAPALDILKALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCC----CCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 87677788889999998884321 1000011 11222233443 6899999999975
No 6
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=3.3e-11 Score=98.36 Aligned_cols=116 Identities=10% Similarity=-0.050 Sum_probs=79.0
Q ss_pred CCCeeeehHHHHHHHHHHhc--CCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCc--------ccceEEEEcCCCC-CH
Q 043562 30 SRDMVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHY--------FDCHAWVQEPYTC-YA 98 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~ 98 (176)
+.+++|++.+++++..++.. .....+.+.|+|++|+|||+||+.+++. .... ....+|++.+... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 37899999999999988865 3334568999999999999999999986 3222 2236777776666 77
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCCCchhhhhhhhhCCCceEEEecCCCCh
Q 043562 99 DQILDIIITFLMPSSSRMVRADTDNEPSTNMGRPETSTSQRNIPTRDEYQP 149 (176)
Q Consensus 99 ~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDV~~~ 149 (176)
..++..++..+.+...... ..............+..++.+|||||++..
T Consensus 97 ~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~l~~~l~~~~~vlilDEi~~l 145 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKH--GINLGEYIDKIKNGTRNIRAIIYLDEVDTL 145 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSS--SSCTHHHHHHHHHHHSSSCEEEEEETTHHH
T ss_pred HHHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHHhccCCCEEEEECHHHh
Confidence 8888888888843211100 111111223335566666669999999753
No 7
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.09 E-value=1.9e-10 Score=93.53 Aligned_cols=115 Identities=10% Similarity=-0.073 Sum_probs=79.8
Q ss_pred CCCCeeeehHHHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcc------cceEEEEcCCCCCHHH
Q 043562 29 KSRDMVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYF------DCHAWVQEPYTCYADQ 100 (176)
Q Consensus 29 ~~~~~vG~~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~ 100 (176)
.+..++|++.+++.+..++... ....+.+.|+|++|+||||||+.+++. ....+ ...+|++.....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 4478999999999999988542 345668899999999999999999986 32221 2357788888888888
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCc-hhhhhhhhh--CCCceEEEecCCCCh
Q 043562 101 ILDIIITFLMPSSSRMVRADTDNEP-STNMGRPET--STSQRNIPTRDEYQP 149 (176)
Q Consensus 101 ll~~il~~l~~~~~~~~~~~~~~~~-~~~~~~~~l--~~kr~LlVLDDV~~~ 149 (176)
++..++.++... .+....... ........+ .+++++|+||++...
T Consensus 95 ~~~~l~~~l~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 95 VASAIAEAVGVR----VPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHHHHHSCC----CCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHHHHHhCCC----CCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 999999988432 110111111 122223333 456899999999754
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=2.1e-11 Score=99.08 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=77.5
Q ss_pred CCCCCCCCCCeeeehHHHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcc---cceEEEEcCCCCC
Q 043562 23 GISSSSKSRDMVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYF---DCHAWVQEPYTCY 97 (176)
Q Consensus 23 ~~~~~~~~~~~vG~~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~ 97 (176)
.+.+...+..++||+.+++.|.+++... ......+.|+|++|+||||||+.+++. ....+ ...+|++.....+
T Consensus 12 ~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 12 YLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp GGSSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCS
T ss_pred hCCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCC
Confidence 3444444578999999999999988752 334568899999999999999999986 44433 2356777666556
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCC-chhhhhhhhh--CCCceEEEecCCCC
Q 043562 98 ADQILDIIITFLMPSSSRMVRADTDNE-PSTNMGRPET--STSQRNIPTRDEYQ 148 (176)
Q Consensus 98 ~~~ll~~il~~l~~~~~~~~~~~~~~~-~~~~~~~~~l--~~kr~LlVLDDV~~ 148 (176)
...++..++..+... .+...... .........+ .+++++||||+++.
T Consensus 90 ~~~~~~~i~~~l~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 90 PYRVLADLLESLDVK----VPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp HHHHHHHHTTTTSCC----CCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHH
T ss_pred HHHHHHHHHHHhCCC----CCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhh
Confidence 667777776665321 11000011 1112222233 34589999999864
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.00 E-value=1.4e-09 Score=88.57 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=83.4
Q ss_pred CCCCeeeehHHHHHHHHHHhc----CCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcc-cceEEEEcCCCCCHHHHHH
Q 043562 29 KSRDMVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYF-DCHAWVQEPYTCYADQILD 103 (176)
Q Consensus 29 ~~~~~vG~~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~ll~ 103 (176)
.+..++||+.+++.|..++.. ..+..+.+.|+|+.|+|||||++.+++. ..... ...++++.+...+...++.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHH
Confidence 347899999999999998875 2223348899999999999999999987 33332 2357778777777888888
Q ss_pred HHHHHhCCCCCccccCCCCCCchhhhhhhhh--CCCceEEEecCCCC--hhhhHHHhcCCC
Q 043562 104 IIITFLMPSSSRMVRADTDNEPSTNMGRPET--STSQRNIPTRDEYQ--PEEYTDQRRIPS 160 (176)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVLDDV~~--~~~w~~i~~~~~ 160 (176)
.++..+..... .. ..............+ .+++.+|+||++.. .+....+.....
T Consensus 93 ~l~~~l~~~~~--~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 93 EIARSLNIPFP--RR-GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQ 150 (389)
T ss_dssp HHHHHTTCCCC--SS-CCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTT
T ss_pred HHHHHhCccCC--CC-CCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHH
Confidence 88887743210 00 000011111222222 36688999999875 455666655543
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.91 E-value=1.1e-09 Score=87.77 Aligned_cols=70 Identities=7% Similarity=0.091 Sum_probs=53.7
Q ss_pred CCCCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCC------CHHHHH
Q 043562 29 KSRDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTC------YADQIL 102 (176)
Q Consensus 29 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~ll 102 (176)
.+..++||+.+++.|.+++..+ +++.|+|+.|+|||||++++++. . . .+|+++.... +...++
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHHH
Confidence 4567999999999999998753 68999999999999999999876 2 1 6777764332 455666
Q ss_pred HHHHHHh
Q 043562 103 DIIITFL 109 (176)
Q Consensus 103 ~~il~~l 109 (176)
..+...+
T Consensus 79 ~~l~~~l 85 (350)
T 2qen_A 79 KELQSTI 85 (350)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 6666554
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.80 E-value=9.3e-09 Score=82.44 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=50.7
Q ss_pred CCCCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCC-----CCHHHHHH
Q 043562 29 KSRDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYT-----CYADQILD 103 (176)
Q Consensus 29 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~ll~ 103 (176)
.+..++||+.+++.|.+ +.. +++.|+|+.|+|||+|++.+.+. ... ..+|+++... .+...++.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 45679999999999999 653 58999999999999999999886 322 2578876532 34445555
Q ss_pred HHHHH
Q 043562 104 IIITF 108 (176)
Q Consensus 104 ~il~~ 108 (176)
.+...
T Consensus 80 ~l~~~ 84 (357)
T 2fna_A 80 ELQKE 84 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.72 E-value=2.2e-08 Score=75.44 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=39.2
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.|..++.... ..+.+.|+|++|+||||||+.+++.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999987643 2347889999999999999999876
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.71 E-value=1.1e-07 Score=70.90 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCc-cc-ceEEEEcCCCCCHHHHHHHHHHH
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHY-FD-CHAWVQEPYTCYADQILDIIITF 108 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~ll~~il~~ 108 (176)
.+++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++. .... +. ..+.++.+.......+...+ ..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 91 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKI-KE 91 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHH-HH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHH-HH
Confidence 468999999999999998653 223899999999999999999876 3222 22 23445555554444333322 22
Q ss_pred hCCCCCccccCCCCCCchhhhhhhhhCCCceEEEecCCCCh--hhhHHHh
Q 043562 109 LMPSSSRMVRADTDNEPSTNMGRPETSTSQRNIPTRDEYQP--EEYTDQR 156 (176)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDV~~~--~~w~~i~ 156 (176)
+... .....+++.+||+||+... +..+.+.
T Consensus 92 ~~~~------------------~~~~~~~~~vliiDe~~~l~~~~~~~l~ 123 (226)
T 2chg_A 92 FART------------------APIGGAPFKIIFLDEADALTADAQAALR 123 (226)
T ss_dssp HHTS------------------CCSTTCSCEEEEEETGGGSCHHHHHHHH
T ss_pred Hhcc------------------cCCCccCceEEEEeChhhcCHHHHHHHH
Confidence 2110 0011356788999998643 3344444
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.3e-08 Score=79.85 Aligned_cols=112 Identities=5% Similarity=-0.069 Sum_probs=73.1
Q ss_pred eeeehHHHHHHHHHHhc--CCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccC---cc-c-ceEEEEcCCCCCHHHHHHHH
Q 043562 33 MVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKH---YF-D-CHAWVQEPYTCYADQILDII 105 (176)
Q Consensus 33 ~vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F-~-~~~wv~vs~~~~~~~ll~~i 105 (176)
+.||++++++|...|.. .......+-|+|++|+|||++++.+++...-.. .. . ..+.++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999999988875 234566789999999999999999998731111 11 1 25667777777888899999
Q ss_pred HHHhCCCCCccccCCCCCCc-hhhhhhh--hhCCCceEEEecCCCC
Q 043562 106 ITFLMPSSSRMVRADTDNEP-STNMGRP--ETSTSQRNIPTRDEYQ 148 (176)
Q Consensus 106 l~~l~~~~~~~~~~~~~~~~-~~~~~~~--~l~~kr~LlVLDDV~~ 148 (176)
++++.+.. .+ ...... ....... .-.++.++++||.+..
T Consensus 102 ~~~L~g~~---~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 102 WFAISKEN---LC-GDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHhcCCC---CC-chHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 99996532 11 001111 1111111 1246789999999865
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.62 E-value=9e-08 Score=69.65 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.+.+++.... ...+.|+|+.|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999987633 456789999999999999999876
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=6.7e-07 Score=70.81 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.|..++..+.. ..+.++|++|+|||++|+.+++.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHH
Confidence 4699999999999999886542 23889999999999999999876
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=1.6e-06 Score=68.67 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=38.8
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.|..++..+. ...+.++|+.|+||||+|+.+++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 469999999999999988653 334899999999999999999886
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=2e-06 Score=67.34 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=39.9
Q ss_pred CCCCCeeeehHHHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 28 SKSRDMVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 28 ~~~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-.+++|++..+++|.+.+... -...+-+.|+|++|+|||+||+.+++.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34467999999999998877431 123456889999999999999999887
No 19
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.17 E-value=2.1e-06 Score=63.87 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=38.3
Q ss_pred CCeeeehH----HHHHHHHHHhcCCCC--cEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEc
Q 043562 31 RDMVGLDD----RMEELLDLLIEGPPQ--LSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQE 92 (176)
Q Consensus 31 ~~~vG~~~----~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 92 (176)
.++++... .++.+..++...... ...+.|+|++|+|||+||+.+++. ........+++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 35665443 334455555543221 267889999999999999999987 4333344566653
No 20
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=1.6e-06 Score=62.90 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=38.2
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.+.+.+.... ...+.|+|+.|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999887633 445689999999999999999876
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.10 E-value=3.5e-06 Score=66.99 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCeeeehHHHHHHHHHHhc---CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..+..+..++.. .......+.|+|+.|+|||+||+.+++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999998888763 1223456889999999999999999886
No 22
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=9.4e-06 Score=69.28 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCeeeehHHHHHHHHHHhcC---------------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEG---------------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..+++|.++|... ....+.+.|+|+.|+||||+|+.+++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999998751 013468899999999999999999987
No 23
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.00 E-value=2e-05 Score=66.31 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=37.9
Q ss_pred CCeeeehHHH---HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRM---EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+ ..|...+..+. ...+.++|+.|+||||||+.+++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 5799998888 67777777654 467899999999999999999987
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.00 E-value=1.4e-05 Score=63.46 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=38.4
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+++|.+++.. +-...+.+.|+|+.|+|||+||+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4699999999998887652 1234567899999999999999999987
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.98 E-value=2.8e-05 Score=65.19 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=37.9
Q ss_pred CCeeeehHHHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..++.|.+.+.. .....+-|.++|+.|+|||+||+.+++.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999887731 1123467889999999999999999986
No 26
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.93 E-value=1.3e-05 Score=56.78 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=35.5
Q ss_pred CeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 32 DMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++|....+.++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999998887642222334689999999999999999986
No 27
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.91 E-value=2.1e-05 Score=63.15 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCCeeeehHHHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-++++|.+..++.|.+.+.. .....+-|.++|+.|+|||+||+.+++.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 35789999999998887641 1123467889999999999999999986
No 28
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.89 E-value=4.5e-05 Score=60.73 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=39.2
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+..|.+++..+. ...++-+.|+.|+|||++|+.+.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 579999999999999998543 3457788899999999999999887
No 29
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.87 E-value=0.00012 Score=56.94 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCCeeeehHHHHHHHHH-------Hhc-CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDL-------LIE-GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...++|....++++... +.. .......+-|+|+.|+|||+||+.+++.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35688988877776662 322 2445678899999999999999999886
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.85 E-value=1.5e-05 Score=66.85 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=32.6
Q ss_pred Cee-eehHH--HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcc
Q 043562 32 DMV-GLDDR--MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYF 84 (176)
Q Consensus 32 ~~v-G~~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 84 (176)
+++ |.... ...+..+...... ...+.|+|+.|+||||||+.+++. ....|
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~ 158 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNE 158 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHC
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhC
Confidence 455 64333 2333333333322 678899999999999999999986 44444
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.82 E-value=2.5e-05 Score=63.56 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCCeeeehHHHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..++.|.+++.. .....+.+.|+|+.|+|||+||+.+++.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999887742 1123567889999999999999999876
No 32
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.81 E-value=2.1e-05 Score=60.92 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=36.3
Q ss_pred CCCeeeehHHHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..++.|.+++.. .....+-+.|+|+.|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35799999888888776641 1111233679999999999999999886
No 33
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.78 E-value=3e-05 Score=69.95 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=38.0
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
++++|++.++..+...|.... .+-+.++|.+|+|||+||+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 234679999999999999999876
No 34
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.78 E-value=3.8e-05 Score=61.22 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|....+.++.+.+..-......|-|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46899999999998888652223345779999999999999999885
No 35
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=0.00015 Score=64.49 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=38.1
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
++++|++..+..+.+.|.... ..-+.++|..|+|||++|+.+++.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 344679999999999999998875
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.75 E-value=1.4e-05 Score=63.96 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCeeeehHHHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.+..++... ......+.|+|+.|+|||+||+.+++.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999888742 334556899999999999999999876
No 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.74 E-value=6.9e-05 Score=59.02 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=42.6
Q ss_pred CeeeehHHHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcC
Q 043562 32 DMVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEP 93 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 93 (176)
.++|.+..++.+...+... ......+.++|+.|+|||++|+.+++. ....-...+.+.++
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMT 84 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecc
Confidence 5789999988888877642 122468999999999999999999886 32222234455543
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.68 E-value=5e-05 Score=61.32 Aligned_cols=47 Identities=28% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCeeeehHHHHHHH---HHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELL---DLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~---~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..++.+. ..+.......+.+-|+|+.|+|||+||+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 47999998877754 444444333468899999999999999999987
No 39
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.68 E-value=8.7e-06 Score=57.68 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=33.9
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+.++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46889999999888887641112234679999999999999999886
No 40
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.66 E-value=4.6e-05 Score=61.46 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=38.8
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.|...+..+. ....+.|+|+.|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999987643 2346789999999999999999875
No 41
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.64 E-value=4.6e-05 Score=64.28 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=37.9
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++||++..+..+...|.... ..-+-++|++|+|||+||+.+++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997633 234579999999999999998876
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.63 E-value=8.4e-05 Score=55.87 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=38.0
Q ss_pred CCeeee---hHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEc
Q 043562 31 RDMVGL---DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQE 92 (176)
Q Consensus 31 ~~~vG~---~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 92 (176)
.+++|. +..++.+..++... ....+.|+|+.|+||||||+.+++. .........+++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~ 88 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPL 88 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH
Confidence 467763 34455555555543 3567889999999999999999876 3322333456654
No 43
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.63 E-value=4.7e-05 Score=58.44 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCCeeeehHHHHHHHHHHhc---CC-------CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE---GP-------PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..++.|.+++.. .. ...+.+.|+|++|+|||+||+.+++.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999888888776532 11 23456789999999999999999886
No 44
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.63 E-value=6.1e-05 Score=58.31 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=34.1
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+..+.+.+..-......+-|+|..|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999988888776542112345779999999999999999987
No 45
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00013 Score=61.13 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-+++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+++++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35688999999998876642 2234577889999999999999999987
No 46
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=4.4e-05 Score=61.13 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=38.1
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999998876532 22789999999999999999876
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.61 E-value=3.3e-05 Score=60.72 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=38.5
Q ss_pred CCCeeeehHHHHHHHHHHhcC----------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..++.|.+++... ....+.+.|+|+.|+||||||+.+++.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999998877421 112457889999999999999999886
No 48
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.60 E-value=3.7e-05 Score=61.53 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCCeeeehHHHHHHHHHHh----------cCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLI----------EGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..++.|.+++. ......+-+-++|++|+|||+||+.+++.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999988873 11223456889999999999999999886
No 49
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.60 E-value=3.8e-05 Score=60.54 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=36.2
Q ss_pred CeeeehHHHHHHHHHHhc-------------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 32 DMVGLDDRMEELLDLLIE-------------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++|.+..++.|.+++.. .......+.|+|+.|+|||+||+.+++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 589999999888876542 1234557899999999999999987765
No 50
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00014 Score=60.79 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++.|.++.+++|.+.+.- +-...+-|-++|++|+|||+||+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999998876642 2234566889999999999999999987
No 51
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.54 E-value=0.00011 Score=54.68 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=32.7
Q ss_pred ehHHHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 36 LDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 36 ~~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++.++.|.+.+... .....+|+|.|+.|+|||||++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455667777777652 345679999999999999999998764
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00016 Score=61.03 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=38.1
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++.|.++.+++|.+.+.- +-...+-|-++|++|+|||+||+++++.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 5788999999998876431 2234667889999999999999999987
No 53
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00013 Score=60.55 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=37.7
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++.|.++.+++|.+.+.- +-...+=|-++|++|+|||.||+++++.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 5688999999998876542 2234566789999999999999999987
No 54
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.53 E-value=8.8e-05 Score=55.54 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 40 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 40 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++|.+.+......-.+|+|+|+.|.|||||++.+...
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33444444433345679999999999999999998765
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=7.1e-05 Score=57.67 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=35.6
Q ss_pred CCCeeeehHHHHHHHHHHhc---C-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE---G-------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..++++.+++.. . ....+-+.|+|+.|+||||||+.+++.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35789999888877665431 1 112335789999999999999999876
No 56
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.51 E-value=0.00013 Score=58.20 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCC-CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 40 MEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 40 ~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+..+.+++..-. .....+.|+|+.|+|||+||..+++.
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 334455665422 12467889999999999999999986
No 57
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.49 E-value=5.7e-05 Score=59.28 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCeeeehHHHHHHHHHHhc------------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE------------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.+..++.+...+.. .......+-++|+.|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999998887754 0112346779999999999999999876
No 58
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.49 E-value=6e-05 Score=60.69 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCeeeehHHHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.+..++.+...+... ......+.++|+.|+||||||+.+++.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45788887777777666532 233467899999999999999999876
No 59
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=6.8e-05 Score=54.67 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 37 DDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 37 ~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...++.+.+++..- ...-..+.|+|+.|+||||||+.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33444444444431 123468899999999999999999886
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.48 E-value=6.2e-05 Score=59.24 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=37.6
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|++..++.|..++..+. ...+.++|+.|+|||++|+.+++.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH
Confidence 468999999999988887643 233889999999999999999876
No 61
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.46 E-value=8.9e-05 Score=52.98 Aligned_cols=25 Identities=8% Similarity=0.036 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-..+.|+|+.|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999886
No 62
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=5.5e-05 Score=60.75 Aligned_cols=44 Identities=9% Similarity=-0.005 Sum_probs=35.6
Q ss_pred CCeeeehHHHHHHHHHH-hcCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 31 RDMVGLDDRMEELLDLL-IEGPPQLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
.+++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 46899999998888887 4332 233 89999999999999998876
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.39 E-value=0.00015 Score=64.59 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++||++..++.+...|.... ..-+-++|++|+|||++|+.+++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997633 233679999999999999998876
No 64
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.35 E-value=0.00018 Score=58.03 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-+++.|+|++|+|||+||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999864
No 65
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.35 E-value=0.00016 Score=58.73 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=35.9
Q ss_pred eeeehHHHHHHHHHHh-------------cCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 33 MVGLDDRMEELLDLLI-------------EGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 33 ~vG~~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
++|.+..++.+...+. ........+.++|++|+|||++|+.+++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 7899999998888773 11123456889999999999999999876
No 66
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.35 E-value=0.00022 Score=56.79 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 40 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 40 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+..++.........+.|+|+.|+||||||+.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33445554443334567899999999999999999886
No 67
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.34 E-value=0.00024 Score=56.32 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 50 GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 50 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
......+|+|+|..|+||||||+.+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999987664
No 68
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.34 E-value=0.0001 Score=60.41 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCeeeehHHHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..++.|.+++.. .....+-+.|+|+.|+|||+||+.+++.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999888732 0112457889999999999999999876
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.33 E-value=0.0003 Score=63.16 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=37.6
Q ss_pred CCeeeehHHHHHHHHHHh----c-------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLI----E-------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~----~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++.|.++.+++|.+++. . +-...+-|-++|++|+|||+||+++++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 468889998888887653 1 1134567889999999999999999987
No 70
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.32 E-value=0.00012 Score=52.17 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 043562 55 SAVTILDSIGLDKTAFAAEA 74 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v 74 (176)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 71
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.31 E-value=0.00011 Score=59.71 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=37.7
Q ss_pred CCCeeeehHHHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..++.|.+.+.. .....+-|.++|+.|+|||+||+.+++.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35799999999999887731 1122345789999999999999999987
No 72
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.29 E-value=0.00071 Score=57.42 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=67.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcCc-cCcccceEEEEcCCCCC-HHHHHHHHHHHhCCC------CCccccCCCCCCc-
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSNYV-KHYFDCHAWVQEPYTCY-ADQILDIIITFLMPS------SSRMVRADTDNEP- 125 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~-~~~ll~~il~~l~~~------~~~~~~~~~~~~~- 125 (176)
.-++|.|..|+|||+|+..+.++ + +.+-+.++++-+++... ..++++.+...-.-. ....+-....+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~--~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHH--TTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CeEEeecCCCCCchHHHHHHHHH--HHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 35799999999999999998876 3 23456778887776654 455666655431111 0011111111222
Q ss_pred hhhhh--------hhhhC---CCceEEEecCCCCh-hhhH----HHhcCCCCCCCCCCCc
Q 043562 126 STNMG--------RPETS---TSQRNIPTRDEYQP-EEYT----DQRRIPSRYPFPKERE 169 (176)
Q Consensus 126 ~~~~~--------~~~l~---~kr~LlVLDDV~~~-~~w~----~i~~~~~~~~~~~~~~ 169 (176)
..+.. .++++ ++.+||++||+... .++. .+.+.|..-+||++=+
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~ 303 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLS 303 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhh
Confidence 12211 44554 69999999999643 2333 3457788888887643
No 73
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.29 E-value=0.00034 Score=58.71 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCeeeehHHHHHHHHHHh---cCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLI---EGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..++.+..++. .+....+-+-++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 679999998887655543 33333456789999999999999999886
No 74
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.27 E-value=0.00026 Score=59.84 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=66.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCC-HHHHHHHHHHHhCCC-----CCccccCCCCCCc-hh
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCY-ADQILDIIITFLMPS-----SSRMVRADTDNEP-ST 127 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~ll~~il~~l~~~-----~~~~~~~~~~~~~-~~ 127 (176)
.-++|+|..|+|||+|+..+.++. .+.+-+.++++-+++... ..++++.+...-... ....+-....+.. ..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHH
Confidence 357999999999999999987762 122335567776766543 455666655431111 0111111112222 22
Q ss_pred hhh--------hhhh---CCCceEEEecCCCCh-hhhHH----HhcCCCCCCCCCCCcc
Q 043562 128 NMG--------RPET---STSQRNIPTRDEYQP-EEYTD----QRRIPSRYPFPKEREH 170 (176)
Q Consensus 128 ~~~--------~~~l---~~kr~LlVLDDV~~~-~~w~~----i~~~~~~~~~~~~~~~ 170 (176)
+.. .+++ .++.+||++||+... .++.. +.+.|..-+||++-+.
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~ 291 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLAT 291 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHH
Confidence 211 3333 479999999999643 33443 3466777788876543
No 75
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00013 Score=52.75 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 76
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.26 E-value=0.00057 Score=55.81 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=42.2
Q ss_pred ehHHHHHHHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHH
Q 043562 36 LDDRMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYAD 99 (176)
Q Consensus 36 ~~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 99 (176)
...-...|-.+|. .+=..-.++.|+|++|+||||||.++... ....=..++|++....++..
T Consensus 42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH
Confidence 3344456666666 33344579999999999999999998876 32222346788876666653
No 77
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.25 E-value=0.00021 Score=52.25 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.24 E-value=0.0002 Score=54.99 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=34.1
Q ss_pred CCeeeehHHHHHHHHHHhc--C---------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE--G---------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
++++|.+..+.++.++... . ..... +.|+|+.|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 4688988877777665431 1 11123 899999999999999999886
No 79
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.23 E-value=0.00017 Score=61.24 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCeeeehHHHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+++|.+++... ....+-+-|+|+.|+|||+||+.+++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999998877531 234456889999999999999999886
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00033 Score=56.21 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+.-++.|...+..+. ...+.++|+.|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 357898888888888887653 223889999999999999998876
No 81
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.22 E-value=0.00034 Score=54.85 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCCeeeehHHHHHHHHHHhc-----------C-CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE-----------G-PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~-----------~-~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.++.|.++.+++|.+.+.. + ..... +.++|+.|+||||||+.++..
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 35688888888888765421 0 11223 899999999999999999886
No 82
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.22 E-value=0.00016 Score=51.74 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998765
No 83
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.19 E-value=0.00024 Score=60.07 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=63.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCccCcc-cceEEEEcCCCCC-HHHHHHHHHHHhCCCCCccccCCCCCCchhhh----
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSNYVKHYF-DCHAWVQEPYTCY-ADQILDIIITFLMPSSSRMVRADTDNEPSTNM---- 129 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~---- 129 (176)
.++|+|..|+|||||+..+..+ ....+ +.++++-+++..+ ..+++..+...-.-+...-+....++....+.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 5789999999999999998876 33333 3456666665543 33444444321000000000011122111221
Q ss_pred ----hhhhh---CCCceEEEecCCCCh-hhhH----HHhcCCCCCCCCCCCccc
Q 043562 130 ----GRPET---STSQRNIPTRDEYQP-EEYT----DQRRIPSRYPFPKEREHD 171 (176)
Q Consensus 130 ----~~~~l---~~kr~LlVLDDV~~~-~~w~----~i~~~~~~~~~~~~~~~~ 171 (176)
..+++ .++++||++||+-.. .++. .+.+.|..-+||++-+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~ 284 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATE 284 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhH
Confidence 12222 589999999999542 2232 345778888888875543
No 84
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00019 Score=52.47 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999865
No 85
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.17 E-value=0.00024 Score=51.20 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.00022 Score=64.10 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+++|.+++.. .-.....|.|+|+.|+||||||+.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5699999999999888753 1233457899999999999999999887
No 87
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.15 E-value=0.00019 Score=51.68 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 88
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.00023 Score=52.78 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 89
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00035 Score=58.50 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=38.0
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++.|.++.+++|.+.+.. +-...+-|-++|++|+|||.||+++++.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 5789999999998876431 2234567889999999999999999986
No 90
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.14 E-value=0.00027 Score=55.12 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=35.0
Q ss_pred CCCeeeehHHHHHHHHHHhc--C---------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIE--G---------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+..+.++.++... . ..... +.|+|+.|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 35789998888777665432 1 11123 899999999999999999886
No 91
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.12 E-value=0.00031 Score=52.15 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.+|+|+|+.|.||||||+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998876
No 92
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.11 E-value=0.00036 Score=55.65 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.+..+..+...+..+ .-+-++|+.|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999988888877653 25789999999999999999875
No 93
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.10 E-value=0.0003 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999998764
No 94
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.08 E-value=0.00034 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+|+|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 95
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.07 E-value=0.00033 Score=53.93 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998774
No 96
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.06 E-value=0.0007 Score=55.25 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=32.4
Q ss_pred eeehHHHHHHHHHHhc--CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 34 VGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 34 vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
|+.+.-.+.+...+.. ..+....|.|+|+.|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4555566666666643 2345667899999999999999988775
No 97
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.06 E-value=0.00035 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 98
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.06 E-value=0.00034 Score=50.91 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.06 E-value=0.00037 Score=51.85 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|+|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998774
No 100
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.06 E-value=0.0004 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999998764
No 101
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.0029 Score=50.37 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=42.8
Q ss_pred eehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc-CccCcccceEEEEcCC-CCCHHHHHHHHHHHhC
Q 043562 35 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN-YVKHYFDCHAWVQEPY-TCYADQILDIIITFLM 110 (176)
Q Consensus 35 G~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~ll~~il~~l~ 110 (176)
|-++-++.|...+..+. ...+-++|+.|+||||+|+.+.+.- ...........+..+. ..++. -.+.++..+.
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id-~ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH-HHHHHHHHHh
Confidence 44556677777776654 6788899999999999999987631 0111122334454332 33443 3455666553
No 102
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.03 E-value=0.00032 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+.|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999765
No 103
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.03 E-value=0.0004 Score=50.65 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.03 E-value=0.0013 Score=48.80 Aligned_cols=55 Identities=16% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHHHH
Q 043562 43 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQIL 102 (176)
Q Consensus 43 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ll 102 (176)
|-.++..+=..-.++.|+|.+|+|||||+..+.. ..-...+|++.....+...+.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH
Confidence 4444432223345899999999999999999986 112356778766655554443
No 105
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.03 E-value=0.00059 Score=55.51 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=35.4
Q ss_pred CeeeehHHHHHHHHHHhc----------------------------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 32 DMVGLDDRMEELLDLLIE----------------------------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++|.+..++.|...+.. .......+.++|+.|+|||++|+.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 578999888888877620 0112346789999999999999999886
No 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.03 E-value=0.00042 Score=50.70 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 107
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.02 E-value=0.0025 Score=51.78 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=42.9
Q ss_pred eeeehHHHHHHHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCH
Q 043562 33 MVGLDDRMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYA 98 (176)
Q Consensus 33 ~vG~~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 98 (176)
..+...-...|-.+|. .+=..-.++.|+|.+|+||||||.++... ....=..++|++....++.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCH
Confidence 3344444555666665 33234568999999999999999998765 3222235788888776654
No 108
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.01 E-value=0.00038 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999765
No 109
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.01 E-value=0.00048 Score=51.18 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|+|+|+.|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999875
No 110
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.00 E-value=0.0003 Score=52.11 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|+|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998765
No 111
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.0004 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.0017 Score=48.87 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccC----cccceEEEEcCCCCCHHHH
Q 043562 42 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKH----YFDCHAWVQEPYTCYADQI 101 (176)
Q Consensus 42 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l 101 (176)
.|-.+|..+-..-.++.|+|++|+|||||++.+........ .-...+|++....+....+
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 34445543223345899999999999999999887421211 1245788876665555443
No 113
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.00 E-value=0.00044 Score=51.76 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999876
No 114
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.00 E-value=0.00039 Score=51.31 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+|+|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999876
No 115
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.99 E-value=0.0004 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999875
No 116
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.98 E-value=0.00041 Score=52.08 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 117
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.98 E-value=0.00032 Score=51.52 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999854
No 118
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.97 E-value=0.0022 Score=52.28 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=43.2
Q ss_pred eeeehHHHHHHHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCH
Q 043562 33 MVGLDDRMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYA 98 (176)
Q Consensus 33 ~vG~~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 98 (176)
..+...-...|-.+|. .+=..-.++.|.|.+|+||||||.++... ....-..++|++....++.
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDP 105 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccH
Confidence 4444444556666665 33234568999999999999999998765 3222235788988776664
No 119
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.97 E-value=0.0006 Score=50.39 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998865
No 120
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.96 E-value=0.00072 Score=57.25 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=35.8
Q ss_pred CCeeeehHHHHHHHHHHhc--C--------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..++++.+++.. . ..-.+-+.|+|+.|+|||+||+.+++.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5799999988888776542 1 111234789999999999999999886
No 121
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.96 E-value=0.00053 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 122
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.96 E-value=0.00043 Score=51.24 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999876
No 123
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.94 E-value=0.00054 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998765
No 124
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.93 E-value=0.00086 Score=51.46 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 39 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 39 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+.++..-..........|.|.|+.|+||||+|+.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334444333322235678999999999999999998765
No 125
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.93 E-value=0.00034 Score=52.03 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998765
No 126
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.93 E-value=0.00041 Score=51.63 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468899999999999999999775
No 127
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.92 E-value=0.00053 Score=53.08 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998764
No 128
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.92 E-value=0.00048 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999775
No 129
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.92 E-value=0.0038 Score=51.05 Aligned_cols=65 Identities=14% Similarity=-0.017 Sum_probs=43.2
Q ss_pred eeeehHHHHHHHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHH
Q 043562 33 MVGLDDRMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYAD 99 (176)
Q Consensus 33 ~vG~~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 99 (176)
..+...-...|-.+|. .+=..-.++.|.|.+|+||||||.++... ....-..++|++....++..
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH
Confidence 3344444556666665 22233458888999999999999998765 32222357899887766643
No 130
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.91 E-value=0.0009 Score=56.98 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=36.0
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.+..++.+...+..+ .-|-++|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 35789999888887777653 36789999999999999999986
No 131
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.91 E-value=0.00048 Score=57.94 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=62.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCcc-Cccc-ceEEEEcCCCC-CHHHHHHHHHHHhCCCCCccccCCCCCCchhhhh--
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSNYVK-HYFD-CHAWVQEPYTC-YADQILDIIITFLMPSSSRMVRADTDNEPSTNMG-- 130 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~-~~~wv~vs~~~-~~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~-- 130 (176)
-++|.|..|+|||+|+..+.+..... ++=+ .++++-+++.. ...++++.+...=.-+...-+....++-...+..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 36899999999999999998873331 1111 35555555443 3455555544321000000011111111122221
Q ss_pred ------hhhhC---CCceEEEecCCCCh-hhhHH----HhcCCCCCCCCCCCcc
Q 043562 131 ------RPETS---TSQRNIPTRDEYQP-EEYTD----QRRIPSRYPFPKEREH 170 (176)
Q Consensus 131 ------~~~l~---~kr~LlVLDDV~~~-~~w~~----i~~~~~~~~~~~~~~~ 170 (176)
.++++ ++.+||++||+-.. .+..+ +.+.|.+=+||++-+.
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~ 286 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYT 286 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHH
Confidence 44543 79999999999643 23332 3466777888886443
No 132
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.90 E-value=0.00041 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|.|+|+.|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999998865
No 133
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.90 E-value=0.002 Score=54.73 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=60.4
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCcCccCcccc-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCccccCCCCCCchhhhh--
Q 043562 56 AVTILDSIGLDKTAFA-AEAYSSNYVKHYFDC-HAWVQEPYTCY-ADQILDIIITFLMPSSSRMVRADTDNEPSTNMG-- 130 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~-- 130 (176)
-++|.|..|+|||+|| ..+.+. . +-+. ++++-+++... ..++.+.+...-.-+...-+....++....+..
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999995 477776 2 2343 45566665543 445555554321111001111112211122221
Q ss_pred ------hhhh--CCCceEEEecCCCCh-hhhHHH----hcCCCCCCCCCC
Q 043562 131 ------RPET--STSQRNIPTRDEYQP-EEYTDQ----RRIPSRYPFPKE 167 (176)
Q Consensus 131 ------~~~l--~~kr~LlVLDDV~~~-~~w~~i----~~~~~~~~~~~~ 167 (176)
.+++ .++.+||++||+... .++.++ .+.|.+=+||++
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~ 289 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGD 289 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTT
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCch
Confidence 2333 589999999998643 445544 366788888874
No 134
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.90 E-value=0.00042 Score=51.57 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 135
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.90 E-value=0.0021 Score=47.94 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccC----cccceEEEEcCCCCCH
Q 043562 43 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKH----YFDCHAWVQEPYTCYA 98 (176)
Q Consensus 43 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~ 98 (176)
|-.+|...-..-.+++|+|+.|+|||||++.+........ .-...+|+.-......
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4444433323456999999999999999999976311111 1233677765444343
No 136
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.89 E-value=0.0006 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998765
No 137
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.89 E-value=0.00055 Score=50.04 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 138
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.00083 Score=56.15 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++.|.++.+++|.+.+.- +-...+=|-++|++|+|||.||+++++.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 4688999999988876542 2234567889999999999999999986
No 139
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.88 E-value=0.0012 Score=53.12 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 51 PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 51 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.....+|+|.|+.|+|||||++.+...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999998654
No 140
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.87 E-value=0.00071 Score=54.16 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|+|+|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45679999999999999999998764
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.87 E-value=0.00061 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998765
No 142
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.87 E-value=0.00066 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|.+.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
No 143
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.87 E-value=0.0033 Score=50.68 Aligned_cols=99 Identities=8% Similarity=-0.005 Sum_probs=55.9
Q ss_pred HHHHHHHhc---CCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcc--cceEEEEcCCCCCHHHHHHHHHHHhCCCCCc
Q 043562 41 EELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYF--DCHAWVQEPYTCYADQILDIIITFLMPSSSR 115 (176)
Q Consensus 41 ~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~ll~~il~~l~~~~~~ 115 (176)
..|-.+|.. +.-...++-|.|++|+||||||.++... ....+ ..++|++....++... ++.+......
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~ 84 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPER 84 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGG
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHH
Confidence 345556651 2212337899999999999999998766 33332 3478998877776532 4445432111
Q ss_pred cccCCCCCCchhhh-h---hh---hhCCCceEEEecCCCC
Q 043562 116 MVRADTDNEPSTNM-G---RP---ETSTSQRNIPTRDEYQ 148 (176)
Q Consensus 116 ~~~~~~~~~~~~~~-~---~~---~l~~kr~LlVLDDV~~ 148 (176)
-.-... ...++. . .. .-+++.-|||+|-|-.
T Consensus 85 llv~~~--~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 85 VIHTPV--QSLEQLRIDMVNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp EEEEEC--SBHHHHHHHHHHHHHTCCTTCCEEEEEECSTT
T ss_pred eEEEcC--CCHHHHHHHHHHHHHHhhccCceEEEEecccc
Confidence 111011 112222 1 11 1246788999998864
No 144
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00067 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.036 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998775
No 145
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.86 E-value=0.00063 Score=50.75 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998654
No 146
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.86 E-value=0.00067 Score=50.12 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 147
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.86 E-value=0.0014 Score=49.00 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 39 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 39 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+.+...+.. .....|.|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444432 24788999999999999999988765
No 148
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.84 E-value=0.0008 Score=51.55 Aligned_cols=25 Identities=4% Similarity=0.013 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 149
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.84 E-value=0.00067 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh
Q 043562 54 LSAVTILDSIGLDKTAFAAEAY 75 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~ 75 (176)
..+|+|+|+.|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.83 E-value=0.00074 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 151
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.83 E-value=0.00062 Score=49.21 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|.|.|+.|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 152
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.83 E-value=0.00046 Score=55.08 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|.+..+..+...+.... ..-+-|+|+.|+|||+||+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 468999886655444443221 223889999999999999999875
No 153
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.82 E-value=0.0012 Score=53.24 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++|+|+.|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998764
No 154
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.82 E-value=0.00077 Score=54.02 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
+.+||+|.|-|||||||.+..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 578999999999999998776543
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.81 E-value=0.00071 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 156
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.81 E-value=0.0012 Score=56.06 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCcCccCcccc-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCccccCCCCCCchhhhh--
Q 043562 56 AVTILDSIGLDKTAFA-AEAYSSNYVKHYFDC-HAWVQEPYTCY-ADQILDIIITFLMPSSSRMVRADTDNEPSTNMG-- 130 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~-- 130 (176)
-++|.|..|+|||+|| ..+.+. .. -+. ++++-+++... ..++.+.+...-.-+...-+....++....+..
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4689999999999995 477776 32 343 45566665543 334443332210000000011111111112211
Q ss_pred ------hhhh--CCCceEEEecCCCCh-hhhHH----HhcCCCCCCCCCCCccc
Q 043562 131 ------RPET--STSQRNIPTRDEYQP-EEYTD----QRRIPSRYPFPKEREHD 171 (176)
Q Consensus 131 ------~~~l--~~kr~LlVLDDV~~~-~~w~~----i~~~~~~~~~~~~~~~~ 171 (176)
.+++ .++.+||++||+... .++.+ +.+.|.+=+||++-|..
T Consensus 241 ~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~ 294 (507)
T 1fx0_A 241 YTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYL 294 (507)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTT
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhh
Confidence 2222 589999999998643 33433 45778888899876644
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.81 E-value=0.00053 Score=54.16 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999987
No 158
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.80 E-value=0.0016 Score=51.36 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.|.|++|+||||+|+.+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999765
No 159
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.80 E-value=0.00069 Score=49.63 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|+|.|+.|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 160
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.00073 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 161
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.79 E-value=0.00055 Score=49.11 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998775
No 162
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.78 E-value=0.0019 Score=52.41 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 40 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 40 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
...+...+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3344444444445678999999999999999998754
No 163
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.78 E-value=0.006 Score=48.86 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 37 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 37 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
++..+.+...+..+. -...+-++|+.|+|||++|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH
Confidence 445566666665433 3456889999999999999998765
No 164
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.78 E-value=0.0008 Score=48.05 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 165
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.77 E-value=0.0008 Score=51.95 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999884
No 166
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.77 E-value=0.0024 Score=54.38 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=60.0
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCcCccCcccc-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCccccCCCCCCchhhhh--
Q 043562 56 AVTILDSIGLDKTAFA-AEAYSSNYVKHYFDC-HAWVQEPYTCY-ADQILDIIITFLMPSSSRMVRADTDNEPSTNMG-- 130 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~-- 130 (176)
-++|+|..|+|||+|| ..+.+. . .-+. ++++-+++..+ ..++.+.+...=.-+...-+....++....+..
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999996 477776 2 2343 45565665543 445555554311000000111111211122221
Q ss_pred ------hhhh--CCCceEEEecCCCCh-hhhHHH----hcCCCCCCCCCC
Q 043562 131 ------RPET--STSQRNIPTRDEYQP-EEYTDQ----RRIPSRYPFPKE 167 (176)
Q Consensus 131 ------~~~l--~~kr~LlVLDDV~~~-~~w~~i----~~~~~~~~~~~~ 167 (176)
.+++ .++.+||++||+-.. .++.++ .+.|.+=+||++
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~ 302 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGD 302 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCC
T ss_pred HHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChh
Confidence 2333 589999999998643 444443 456788888884
No 167
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.00096 Score=49.65 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999998764
No 168
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.76 E-value=0.00098 Score=49.24 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....|.|+|+.|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998765
No 169
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.0011 Score=49.41 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=30.1
Q ss_pred eehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 35 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 35 G~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+.++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555555432 4789999999999999999988765
No 170
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.74 E-value=0.00069 Score=51.16 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999998764
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.73 E-value=0.00079 Score=48.91 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+|.|+|+.|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.72 E-value=0.0022 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|+|+|.+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988764
No 173
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.71 E-value=0.00085 Score=50.29 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999998865
No 174
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.71 E-value=0.00089 Score=49.63 Aligned_cols=24 Identities=4% Similarity=-0.064 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.71 E-value=0.00054 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=17.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999765
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.70 E-value=0.0011 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998774
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.70 E-value=0.00099 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999998873
No 178
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.69 E-value=0.00096 Score=48.75 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 179
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.69 E-value=0.0012 Score=51.83 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 180
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.68 E-value=0.0011 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++|+|++|+|||||++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3569999999999999999998754
No 181
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.68 E-value=0.00097 Score=50.64 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999875
No 182
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.68 E-value=0.0017 Score=50.08 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.|+|++|+||||+|+.+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998765
No 183
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.68 E-value=0.0064 Score=49.05 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccC----cccceEEEEcCCCCCHHHHHH
Q 043562 43 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKH----YFDCHAWVQEPYTCYADQILD 103 (176)
Q Consensus 43 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~ll~ 103 (176)
|-.+|..+=..-.++.|+|.+|+||||||.++........ .-..++|++....++...+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 4444443334557899999999999999999876521211 123578998877777765543
No 184
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.68 E-value=0.0012 Score=49.30 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 185
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.67 E-value=0.0013 Score=55.28 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=36.0
Q ss_pred CCeeeehHHHHHHHHHHhcC------------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.++-++.|...+... ....+-|.++|+.|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 35789998888887766321 112355889999999999999999886
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.67 E-value=0.0013 Score=55.95 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=36.8
Q ss_pred CCCCCeeeehHHHHHHHHHHhc--CC--------CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 28 SKSRDMVGLDDRMEELLDLLIE--GP--------PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 28 ~~~~~~vG~~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-.+++|.+..+.++.+++.. .. .-.+-+.|+|+.|+||||||+.+++.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3346799999888888776532 10 11223899999999999999999876
No 187
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.66 E-value=0.0013 Score=47.49 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.+++|+|+.|.|||||++.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999998764
No 188
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0011 Score=48.73 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999887
No 189
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.65 E-value=0.00098 Score=49.35 Aligned_cols=24 Identities=4% Similarity=-0.240 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 190
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.65 E-value=0.0016 Score=57.83 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=37.5
Q ss_pred CCeeeehHHHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.+..++.+...+... ......+-++|+.|+|||+||+.+++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999998888877631 122347899999999999999999876
No 191
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.65 E-value=0.0032 Score=53.49 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCcCccCcccc-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCccccCCCCCCchhhhh--
Q 043562 56 AVTILDSIGLDKTAFA-AEAYSSNYVKHYFDC-HAWVQEPYTCY-ADQILDIIITFLMPSSSRMVRADTDNEPSTNMG-- 130 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~-- 130 (176)
-++|.|..|+|||+|| ..+.+. . +-+. ++++-+++..+ ..++.+.+...-.-+...-+....++....+..
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 4689999999999996 466665 2 2233 45666766544 455555543321111001111111111122222
Q ss_pred ------hhhh--CCCceEEEecCCCCh-hhhHH----HhcCCCCCCCCCCC
Q 043562 131 ------RPET--STSQRNIPTRDEYQP-EEYTD----QRRIPSRYPFPKER 168 (176)
Q Consensus 131 ------~~~l--~~kr~LlVLDDV~~~-~~w~~----i~~~~~~~~~~~~~ 168 (176)
.+++ .++.+||++||+-.. .++.+ +.+.|.+=+||++-
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~v 290 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDV 290 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTH
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchh
Confidence 2333 589999999998643 33333 45678888888853
No 192
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.64 E-value=0.00043 Score=51.41 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 193
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.63 E-value=0.0011 Score=48.51 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998765
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.63 E-value=0.0099 Score=47.33 Aligned_cols=64 Identities=19% Similarity=0.086 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHHHHHHHHHH
Q 043562 40 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQILDIIITF 108 (176)
Q Consensus 40 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ll~~il~~ 108 (176)
...|-.++ .+=..-.++.|.|.+|+||||||.++..+..... ..++|++.. .+..++...++..
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 34455555 3223346889999999999999999876522222 457777654 4455666665544
No 195
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.62 E-value=0.001 Score=50.24 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
No 196
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.62 E-value=0.0013 Score=52.21 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|+|+|+.|+|||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998764
No 197
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.61 E-value=0.0012 Score=50.69 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999764
No 198
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.60 E-value=0.0059 Score=51.03 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 39 RMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 39 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.++|.++|... ....++|.++|.+|+||||++..+...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345666666532 134689999999999999999888744
No 199
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.59 E-value=0.0012 Score=49.50 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999775
No 200
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.59 E-value=0.0013 Score=50.72 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999865
No 201
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.58 E-value=0.0015 Score=48.72 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 202
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.58 E-value=0.0046 Score=49.43 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCc----ccceEEEEcCCCCCHHHHHHHHHHHh
Q 043562 41 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHY----FDCHAWVQEPYTCYADQILDIIITFL 109 (176)
Q Consensus 41 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~ll~~il~~l 109 (176)
..|-.+|..+=..-.++.|+|.+|+||||||.++......... -..++|++....++...+.. ++..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 3344444332233468999999999999999998765211111 23578998877777766553 33443
No 203
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.58 E-value=0.0025 Score=50.87 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcC------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 39 RMEELLDLLIEG------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 39 ~~~~l~~~L~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.++|.+.|... .....+|+|+|.+|+||||++..++..
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 344555555432 234679999999999999999998765
No 204
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.57 E-value=0.0013 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
No 205
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.57 E-value=0.00081 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHh-cC
Q 043562 55 SAVTILDSIGLDKTAFAAEAY-SS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~-~~ 77 (176)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 53
No 206
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.57 E-value=0.0012 Score=50.13 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 207
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.57 E-value=0.0012 Score=54.73 Aligned_cols=91 Identities=12% Similarity=-0.010 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcCccC---cccceEEEEcCCCCCHHHHHHHHHHHhCCCCCccccCCCCCCc-hhhhh
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSNYVKH---YFDCHAWVQEPYTCYADQILDIIITFLMPSSSRMVRADTDNEP-STNMG 130 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~-~~~~~ 130 (176)
..++|+|..|+|||||++.+.+. +.. .+.+ +++-+++.... ..++.+.+.. .-+. ...+.. ..+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~-I~~lIGER~~E---v~~~~~~~~~---~vV~-atadep~~~r~~ 244 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVL-MVLLIDERPEE---VTEMQRLVKG---EVVA-STFDEPASRHVQ 244 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEE-EEEEESSCHHH---HHHHHTTCSS---EEEE-ECTTSCHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeE-EEEEecCChHH---HHHHHHHhCe---EEEE-eCCCCCHHHHHH
Confidence 47899999999999999988765 322 2333 34555544322 2233333311 1111 111122 11111
Q ss_pred --------hhhh--CCCceEEEecCCCCh-hhhHHH
Q 043562 131 --------RPET--STSQRNIPTRDEYQP-EEYTDQ 155 (176)
Q Consensus 131 --------~~~l--~~kr~LlVLDDV~~~-~~w~~i 155 (176)
.+++ .++.+||++||+-.. .++..+
T Consensus 245 ~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~rev 280 (422)
T 3ice_A 245 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTV 280 (422)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHH
Confidence 2222 589999999998643 344444
No 208
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.56 E-value=0.0013 Score=49.02 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.56 E-value=0.0026 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+++++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999988754
No 210
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.54 E-value=0.002 Score=54.31 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=59.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCccCc--ccceEEEEcCCCC-CHHHHHHHHHHHhCCCCCccccCCCCCCchhhhh--
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSNYVKHY--FDCHAWVQEPYTC-YADQILDIIITFLMPSSSRMVRADTDNEPSTNMG-- 130 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~-- 130 (176)
-++|.|..|+|||+|+..+.++...... =+.++++-+++.. ...++++.+...-.-+...-+....++-...+..
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 4678899999999999999887433211 1245555555443 3455665554321100000011111111122221
Q ss_pred ------hhhhC---CCceEEEecCCCCh-hhhH----HHhcCCCCCCCCCC
Q 043562 131 ------RPETS---TSQRNIPTRDEYQP-EEYT----DQRRIPSRYPFPKE 167 (176)
Q Consensus 131 ------~~~l~---~kr~LlVLDDV~~~-~~w~----~i~~~~~~~~~~~~ 167 (176)
.++++ ++.+||++||+... +++. .+.+.|.+=+||++
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~ 284 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGY 284 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCch
Confidence 44554 79999999998532 2222 23355666677764
No 211
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0017 Score=51.68 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998764
No 212
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.53 E-value=0.00093 Score=56.18 Aligned_cols=115 Identities=14% Similarity=0.056 Sum_probs=61.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCcc--------Cccc-ceEEEEcCCCC-CHHHHHHHHHHHhCCCCCccccCCCCCCc
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSNYVK--------HYFD-CHAWVQEPYTC-YADQILDIIITFLMPSSSRMVRADTDNEP 125 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~ll~~il~~l~~~~~~~~~~~~~~~~ 125 (176)
-++|.|..|+|||+|+..+.+..... ++=+ .++++-+++.. ...++.+.+...=.-+...-+....++..
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 46889999999999999998874331 1112 34555555443 34455555433100000000111111111
Q ss_pred hhhhh--------hhhhC---CCceEEEecCCCCh-hhhHHH----hcCCCCCCCCCCCcc
Q 043562 126 STNMG--------RPETS---TSQRNIPTRDEYQP-EEYTDQ----RRIPSRYPFPKEREH 170 (176)
Q Consensus 126 ~~~~~--------~~~l~---~kr~LlVLDDV~~~-~~w~~i----~~~~~~~~~~~~~~~ 170 (176)
..+.. .++++ ++.+||++||+... .++.++ .+.|.+=+||++-+.
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~ 289 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYT 289 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHH
Confidence 22221 44443 79999999999643 333332 456777778776443
No 213
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0013 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998765
No 214
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.50 E-value=0.0015 Score=48.74 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 215
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.50 E-value=0.0015 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999765
No 216
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.49 E-value=0.0015 Score=50.08 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999876
No 217
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.49 E-value=0.0047 Score=53.59 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=35.6
Q ss_pred CeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 32 DMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++|.+.-++.+...+..+ ..+.|+|+.|+||||||+.++..
T Consensus 42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 5899888887777777654 37899999999999999999886
No 218
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.48 E-value=0.0012 Score=49.56 Aligned_cols=24 Identities=13% Similarity=-0.087 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 219
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.46 E-value=0.0016 Score=51.17 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999764
No 220
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.46 E-value=0.0024 Score=48.35 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=29.8
Q ss_pred ehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 36 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 36 ~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-+..+..++..- ++.+.+.|+|++|+||||+|..+++.
T Consensus 41 ~~~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 41 FITFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 334466667766642 23456899999999999999888765
No 221
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.45 E-value=0.0017 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999875
No 222
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.44 E-value=0.0017 Score=50.72 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999874
No 223
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.00092 Score=48.87 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988654
No 224
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.44 E-value=0.0017 Score=50.38 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998765
No 225
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.44 E-value=0.0019 Score=49.62 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998764
No 226
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.43 E-value=0.0027 Score=54.47 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=34.8
Q ss_pred CeeeehHHHHHHHHHHhc----CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 32 DMVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++|.++-...+.+.+.- .......+.++|+.|+||||||+.++..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 478888877777554431 2224558999999999999999999886
No 227
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.43 E-value=0.0014 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998753
No 228
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.42 E-value=0.0031 Score=48.80 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999875
No 229
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.42 E-value=0.0019 Score=49.95 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999884
No 230
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.41 E-value=0.0019 Score=49.29 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999876
No 231
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.41 E-value=0.0013 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999874
No 232
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.41 E-value=0.0018 Score=50.52 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999998765
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.0017 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998754
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.41 E-value=0.0043 Score=52.79 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.+++|+|..|+|||||++.+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999998765
No 235
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.39 E-value=0.0019 Score=49.87 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999775
No 236
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.39 E-value=0.014 Score=48.84 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888754
No 237
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.38 E-value=0.0025 Score=48.43 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+.++|.|.|++|+||+|.|+.+.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998875
No 238
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.38 E-value=0.0021 Score=50.24 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999885
No 239
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.36 E-value=0.0021 Score=50.01 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999875
No 240
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.35 E-value=0.0017 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999875
No 241
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.35 E-value=0.002 Score=50.06 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999775
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.35 E-value=0.005 Score=54.61 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=37.2
Q ss_pred CCeeeehHHHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.+..++.+...+... ......+.++|+.|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45889999888887776531 123457899999999999999999886
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.35 E-value=0.0094 Score=47.34 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccC---------cc-----cceEEEEcCCCCCHHHHHHHHH
Q 043562 41 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKH---------YF-----DCHAWVQEPYTCYADQILDIII 106 (176)
Q Consensus 41 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~ll~~il 106 (176)
..|-.+|..+=..-.++.|+|.+|+|||+||.++........ .. ..++|++....++...+... +
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~ 163 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-A 163 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-H
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-H
Confidence 445555543323457899999999999999999876421111 11 35788988887777665543 3
Q ss_pred HHh
Q 043562 107 TFL 109 (176)
Q Consensus 107 ~~l 109 (176)
..+
T Consensus 164 ~~~ 166 (322)
T 2i1q_A 164 EHA 166 (322)
T ss_dssp HHH
T ss_pred HHc
Confidence 444
No 244
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.35 E-value=0.0021 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998876
No 245
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.35 E-value=0.0074 Score=48.88 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=36.2
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcc---cc-eEEEEcCCCCCHH
Q 043562 43 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYF---DC-HAWVQEPYTCYAD 99 (176)
Q Consensus 43 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-~~wv~vs~~~~~~ 99 (176)
|-.+|..+=..-.++.|+|+.|+|||||++.+.......... .. ++|++....+...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 444444333445799999999999999999988762112112 23 4788765544433
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.35 E-value=0.0022 Score=47.74 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|..|+|||||++.+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999998855
No 247
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.35 E-value=0.0021 Score=50.39 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999775
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.34 E-value=0.0021 Score=47.10 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999998765
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0026 Score=51.91 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++|+|+.|+|||||++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998764
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.33 E-value=0.0037 Score=52.28 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988754
No 251
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.33 E-value=0.004 Score=52.97 Aligned_cols=112 Identities=14% Similarity=0.083 Sum_probs=60.5
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCcCc----cCcccc-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCccccCCCCCCchhh
Q 043562 56 AVTILDSIGLDKTAFA-AEAYSSNYV----KHYFDC-HAWVQEPYTCY-ADQILDIIITFLMPSSSRMVRADTDNEPSTN 128 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~~-~~wv~vs~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~ 128 (176)
-++|+|..|+|||+|| ..+.+.... .++-+. ++++-+++..+ ..++.+.+...-.-+...-+....++....+
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 243 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 243 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence 4689999999999995 466666211 022343 56666665543 4455555543111000001111112111222
Q ss_pred hh--------hhhh--CCCceEEEecCCCCh-hhhHHH----hcCCCCCCCCCC
Q 043562 129 MG--------RPET--STSQRNIPTRDEYQP-EEYTDQ----RRIPSRYPFPKE 167 (176)
Q Consensus 129 ~~--------~~~l--~~kr~LlVLDDV~~~-~~w~~i----~~~~~~~~~~~~ 167 (176)
.. .+++ .++.+||++||+-.. .++.++ .+.|.+=+||++
T Consensus 244 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~ 297 (510)
T 2ck3_A 244 YLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGD 297 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCch
Confidence 21 2333 589999999998643 344443 466777888874
No 252
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.32 E-value=0.0038 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+...+++|+|+.|.|||||++.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34569999999999999999999864
No 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.32 E-value=0.00096 Score=52.77 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=18.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+..+|+|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998764
No 254
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.32 E-value=0.0022 Score=50.05 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999775
No 255
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.32 E-value=0.0023 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 256
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.31 E-value=0.0023 Score=50.41 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999775
No 257
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.30 E-value=0.0024 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998875
No 258
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.30 E-value=0.0028 Score=48.47 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...++.+.|.||+|||||+..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678889999999999999998743
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.28 E-value=0.0019 Score=48.43 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999775
No 260
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.28 E-value=0.0065 Score=49.47 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999998764
No 261
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.28 E-value=0.0024 Score=48.14 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998765
No 262
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.28 E-value=0.0024 Score=49.52 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999875
No 263
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.28 E-value=0.0046 Score=48.43 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 43 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 43 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+..||....++...|.++|++|.|||.||..+.+.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44445444344567999999999999999999863
No 264
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.27 E-value=0.0021 Score=48.00 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 265
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.25 E-value=0.0036 Score=44.45 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.25 E-value=0.0025 Score=48.92 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999765
No 267
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.25 E-value=0.0025 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-.+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998764
No 268
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.25 E-value=0.0025 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 269
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.24 E-value=0.0049 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-..|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999887
No 270
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.21 E-value=0.0027 Score=46.58 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 271
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.0027 Score=52.67 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999875
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.21 E-value=0.0029 Score=49.27 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.+++|+|+.|+|||||++.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3568999999999999999998764
No 273
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0056 Score=44.28 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998876
No 274
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.20 E-value=0.0029 Score=47.93 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|.|.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 275
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.18 E-value=0.0038 Score=50.55 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999886
No 276
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.18 E-value=0.003 Score=47.99 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....+|+|+|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988763
No 277
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.18 E-value=0.0034 Score=49.47 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...++|+|+|-||+||||+|..+..-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 45789999999999999999877654
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.0032 Score=47.42 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPY 94 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 94 (176)
-.++.|.|.+|+||||||.++... ....=...+|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 458999999999999999887654 222223466776443
No 279
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.17 E-value=0.0038 Score=43.54 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-|.|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998765
No 280
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.17 E-value=0.0033 Score=52.28 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 466999999999999999999987
No 281
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.0043 Score=44.62 Aligned_cols=24 Identities=4% Similarity=0.102 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|+++|..|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 282
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.14 E-value=0.0065 Score=54.77 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=36.7
Q ss_pred CeeeehHHHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 32 DMVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++|.+..+..+...+... ......+.|+|+.|+|||++|+.+++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999888888777531 122368899999999999999999876
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.13 E-value=0.0031 Score=50.35 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999864
No 284
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.12 E-value=0.0034 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 285
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.12 E-value=0.0033 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999865
No 286
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.11 E-value=0.0032 Score=43.88 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
-|.++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 287
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.10 E-value=0.003 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999998753
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.10 E-value=0.0033 Score=48.96 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.++.|+|.+|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999988753
No 289
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.09 E-value=0.0041 Score=49.98 Aligned_cols=24 Identities=17% Similarity=0.100 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358899999999999999999875
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.0042 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988765
No 291
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.08 E-value=0.0035 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|+|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999988764
No 292
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.07 E-value=0.0055 Score=44.20 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....-|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999876
No 293
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.07 E-value=0.0034 Score=49.19 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.|..|+|||||++.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999998776
No 294
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.004 Score=47.32 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999999876
No 295
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.04 E-value=0.0028 Score=50.63 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 458999999999999999998764
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.04 E-value=0.0068 Score=51.64 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999874
No 297
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.03 E-value=0.0042 Score=43.91 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.03 E-value=0.01 Score=49.02 Aligned_cols=68 Identities=12% Similarity=0.023 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccC----cccceEEEEcCCCCCHHHHHHHHHHHh
Q 043562 41 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKH----YFDCHAWVQEPYTCYADQILDIIITFL 109 (176)
Q Consensus 41 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~ll~~il~~l 109 (176)
..|-.+|..+=..-.++.|+|.+|+|||||+..++-...... .-...+|++....+....+. .+.+.+
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~ 236 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRF 236 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHc
Confidence 345555543323346899999999999999997652211211 12347788766655554432 344443
No 299
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.00 E-value=0.0039 Score=44.98 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999997653
No 300
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.99 E-value=0.0045 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
++|+|.|-||+||||+|..+..-
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57888999999999999887654
No 301
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.97 E-value=0.0039 Score=49.37 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999876
No 302
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.96 E-value=0.004 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999999874
No 303
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.95 E-value=0.0079 Score=42.66 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+...|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998765
No 304
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.94 E-value=0.005 Score=48.04 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++|+|.|-||+||||+|..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 468889999999999999887654
No 305
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.94 E-value=0.013 Score=44.22 Aligned_cols=24 Identities=17% Similarity=-0.058 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-..|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 306
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.94 E-value=0.0047 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...++|+|..|.|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999988654
No 307
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.93 E-value=0.0045 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.-|.++|..|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999987653
No 308
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.93 E-value=0.0045 Score=50.67 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 358999999999999999998775
No 309
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.93 E-value=0.0058 Score=42.80 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998765
No 310
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.93 E-value=0.0041 Score=49.61 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999865
No 311
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.92 E-value=0.011 Score=47.61 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=22.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 51 PPQLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 51 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
..+..+|+|+|.+|+|||||+..+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999999999999999853
No 312
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.91 E-value=0.027 Score=46.01 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=22.3
Q ss_pred CCCCcEEEEEE-cCCCCcHHHHHHHHhcC
Q 043562 50 GPPQLSAVTIL-DSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 50 ~~~~~~vi~I~-G~gGiGKTtLA~~v~~~ 77 (176)
.....++|+|+ |-||+||||+|..+..-
T Consensus 104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 104 RYSEAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp TCCSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 34467889988 88999999998887654
No 313
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0052 Score=43.16 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999764
No 314
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.91 E-value=0.0097 Score=47.94 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 43 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 43 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
+.+-+.-.-....+++|+|+.|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3333433334567999999999999999999863
No 315
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.88 E-value=0.0031 Score=48.64 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+...|.|.|..|+||||+|+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998876
No 316
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.88 E-value=0.014 Score=44.94 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 42 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 42 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
++...+.....+...|+|+|..|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3333344443455678999999999999999998764
No 317
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.88 E-value=0.0048 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999865
No 318
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.86 E-value=0.0064 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568999999999999999999865
No 319
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.86 E-value=0.0055 Score=43.11 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|.+|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35789999999999999998643
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.86 E-value=0.0051 Score=43.25 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.--|.|+|..|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346799999999999999998765
No 321
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.86 E-value=0.014 Score=45.09 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=25.0
Q ss_pred HhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 47 LIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 47 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
+.........|.++|..|+|||||...+....
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33344445678999999999999999998764
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.85 E-value=0.0051 Score=43.10 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
-|.++|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 323
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.85 E-value=0.0051 Score=43.06 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-|.|+|..|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998765
No 324
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.84 E-value=0.0048 Score=43.30 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998754
No 325
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.84 E-value=0.0055 Score=44.25 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043562 56 AVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~ 76 (176)
+.+|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999854
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.83 E-value=0.0054 Score=43.07 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
--|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999987763
No 327
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.83 E-value=0.0054 Score=42.76 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35799999999999999988765
No 328
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.83 E-value=0.0052 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||.+.+..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 358999999999999999999875
No 329
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.82 E-value=0.0053 Score=50.52 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 58999999999999999999875
No 330
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0053 Score=50.13 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999999875
No 331
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.82 E-value=0.0055 Score=43.93 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 332
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.80 E-value=0.0056 Score=43.49 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45578999999999999999987653
No 333
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.80 E-value=0.0054 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 47999999999999999999865
No 334
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.79 E-value=0.0065 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999876
No 335
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.79 E-value=0.0056 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||.+.+..-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 358999999999999999998764
No 336
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.78 E-value=0.0067 Score=43.86 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
....|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999875
No 337
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.78 E-value=0.013 Score=43.46 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHHHHHHHH
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQILDIII 106 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ll~~il 106 (176)
.|+|-|.-|+||||.++.+++. .+..-..+.+..-+......+.++.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 4788999999999999999886 443333334443333323333444433
No 338
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.77 E-value=0.0053 Score=44.23 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998775
No 339
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.75 E-value=0.0074 Score=42.79 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..--|.|+|..|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45568999999999999999997753
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.74 E-value=0.0058 Score=44.02 Aligned_cols=24 Identities=17% Similarity=-0.103 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 346789999999999999887654
No 341
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.73 E-value=0.0047 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 48999999999999999999875
No 342
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.73 E-value=0.016 Score=56.56 Aligned_cols=57 Identities=16% Similarity=0.033 Sum_probs=40.1
Q ss_pred HHHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHH
Q 043562 42 ELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQ 100 (176)
Q Consensus 42 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 100 (176)
.|..+|. ..=..-+.+-|+|++|+|||+||.++... ...+=..++|+++....+...
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~ 1471 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY 1471 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH
Confidence 3555555 32234668999999999999999998775 333334578888877776644
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0068 Score=44.82 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
....|.|+|.+|+|||||...+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999988763
No 344
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.72 E-value=0.0063 Score=43.15 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998765
No 345
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.71 E-value=0.0062 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+|.|.|++|+||+|.|+.+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999998876
No 346
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.71 E-value=0.0077 Score=43.32 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999998763
No 347
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.70 E-value=0.0064 Score=44.08 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999877655
No 348
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.70 E-value=0.0092 Score=42.28 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999987763
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.69 E-value=0.0067 Score=43.05 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 446789999999999999998765
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.69 E-value=0.0065 Score=42.55 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|..|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 351
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.68 E-value=0.0061 Score=43.76 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 043562 56 AVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
-|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988763
No 352
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.67 E-value=0.0066 Score=42.97 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678999999999999999987654
No 353
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.67 E-value=0.0063 Score=42.71 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|..|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998765
No 354
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.66 E-value=0.0086 Score=42.81 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..--|.|+|..|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567999999999999999988653
No 355
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.65 E-value=0.0068 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4567899999999999999887653
No 356
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.65 E-value=0.0055 Score=45.63 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988664
No 357
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.65 E-value=0.0044 Score=45.54 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999988765
No 358
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.65 E-value=0.0069 Score=43.34 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998654
No 359
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.62 E-value=0.0099 Score=47.10 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 40 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 40 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+++|.+.+. -.+++++|+.|+|||||.+.+. .
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-H
Confidence 444555443 2478999999999999999998 5
No 360
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.61 E-value=0.0069 Score=42.38 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043562 57 VTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 57 i~I~G~gGiGKTtLA~~v~~~ 77 (176)
|.++|..|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998654
No 361
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.60 E-value=0.0042 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999764
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.60 E-value=0.0072 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999987653
No 363
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.59 E-value=0.0073 Score=43.10 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|..|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998765
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.59 E-value=0.0069 Score=43.36 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..--|.|+|..|+|||||...+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999987653
No 365
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.58 E-value=0.0074 Score=43.26 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|.|+|..|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 366
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.57 E-value=0.0056 Score=44.92 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|+++|.+|+|||||...+.+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 367
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.57 E-value=0.0076 Score=43.95 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999999987774
No 368
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.57 E-value=0.007 Score=49.90 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||.+.+..-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 358999999999999999999864
No 369
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.56 E-value=0.0078 Score=42.82 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998765
No 370
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.55 E-value=0.0072 Score=43.98 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999998864
No 371
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.55 E-value=0.014 Score=50.16 Aligned_cols=108 Identities=11% Similarity=0.052 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCH-HHHHHHHHH----HhCCC--CCccccCCCCCCc-h
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYA-DQILDIIIT----FLMPS--SSRMVRADTDNEP-S 126 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~ll~~il~----~l~~~--~~~~~~~~~~~~~-~ 126 (176)
.-++|.|..|+|||+|+..+.+.. +-+.++++-+++..+. .++++.+-+ ..... ....+-....+.. .
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~ 303 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVA 303 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHH
Confidence 367999999999999999987752 2346777878776653 444444321 00000 0000111122222 2
Q ss_pred hhhh--------hhhh--CCCceEEEecCCCCh-hhhH----HHhcCCCCCCCCC
Q 043562 127 TNMG--------RPET--STSQRNIPTRDEYQP-EEYT----DQRRIPSRYPFPK 166 (176)
Q Consensus 127 ~~~~--------~~~l--~~kr~LlVLDDV~~~-~~w~----~i~~~~~~~~~~~ 166 (176)
.+.. .+++ .++.+||++|++... +++. .+.+.|.+-+||+
T Consensus 304 ~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~ 358 (588)
T 3mfy_A 304 AREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA 358 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCCCC----------------CC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCc
Confidence 2211 3333 489999999999632 3333 3456677777877
No 372
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.55 E-value=0.011 Score=41.55 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 373
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.54 E-value=0.01 Score=42.95 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.....|.|+|..|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356788999999999999999988764
No 374
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.54 E-value=0.0077 Score=43.56 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..--|+|+|..|+|||||...+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568999999999999999987753
No 375
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.53 E-value=0.0057 Score=48.46 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-|+|+|..|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3499999999999999998753
No 376
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.53 E-value=0.0097 Score=42.45 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999998854
No 377
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.53 E-value=0.008 Score=43.31 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|+|+|..|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4457899999999999999998763
No 378
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.53 E-value=0.0076 Score=42.65 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 379
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.53 E-value=0.008 Score=42.79 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998865
No 380
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.51 E-value=0.0059 Score=43.47 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998765
No 381
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.51 E-value=0.0078 Score=49.90 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|.|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58899999999999999998754
No 382
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.50 E-value=0.008 Score=43.75 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999987653
No 383
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0083 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998765
No 384
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.49 E-value=0.01 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999875
No 385
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.48 E-value=0.012 Score=44.02 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.....|.|+|.+|+|||||...+....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346678999999999999999998763
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.47 E-value=0.0091 Score=43.55 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987753
No 387
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0087 Score=42.52 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|.|+|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4467999999999999999987653
No 388
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.44 E-value=0.018 Score=43.80 Aligned_cols=25 Identities=16% Similarity=-0.101 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-..|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999886
No 389
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.44 E-value=0.011 Score=43.00 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35578999999999999999987653
No 390
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.44 E-value=0.0098 Score=48.60 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.+++|+|+.|+|||||++.+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999998764
No 391
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.43 E-value=0.013 Score=44.67 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=18.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-..|.|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999887
No 392
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.42 E-value=0.0068 Score=49.28 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHHHHHHHHHHhCCCCCccccCCCCCCchhhhhhhhh
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQILDIIITFLMPSSSRMVRADTDNEPSTNMGRPET 134 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~l 134 (176)
..++|+|+.|.|||||++.+... +.. -...+.+.-......... +..+ .+...... .............++..+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~--~~~-~~g~I~ie~~~e~~~~~~-~~~v-~~v~~q~~-~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE--IPF-DQRLITIEDVPELFLPDH-PNHV-HLFYPSEA-KEEENAPVTAATLLRSCL 249 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT--SCT-TSCEEEEESSSCCCCTTC-SSEE-EEECC-----------CCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--CCC-CceEEEECCccccCcccc-CCEE-EEeecCcc-ccccccccCHHHHHHHHH
Confidence 47899999999999999999876 322 233444442111110000 0000 00000000 000001122334445555
Q ss_pred CCCceEEEecCCCChhhhHHHhcCCCCC
Q 043562 135 STSQRNIPTRDEYQPEEYTDQRRIPSRY 162 (176)
Q Consensus 135 ~~kr~LlVLDDV~~~~~w~~i~~~~~~~ 162 (176)
+...-.++++.+...+.++.+...+..+
T Consensus 250 ~~~pd~~l~~e~r~~~~~~~l~~l~~g~ 277 (361)
T 2gza_A 250 RMKPTRILLAELRGGEAYDFINVAASGH 277 (361)
T ss_dssp TSCCSEEEESCCCSTHHHHHHHHHHTTC
T ss_pred hcCCCEEEEcCchHHHHHHHHHHHhcCC
Confidence 5566677888888887777776655543
No 393
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.42 E-value=0.0068 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+|.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 468999999999999999999876
No 394
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.0088 Score=43.42 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|+|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987653
No 395
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.39 E-value=0.0096 Score=43.34 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=20.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..--|.|+|..|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999987653
No 396
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.39 E-value=0.011 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.024 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|+++|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988765
No 397
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.38 E-value=0.0094 Score=43.01 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999988754
No 398
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.38 E-value=0.0073 Score=44.25 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHh
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAY 75 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~ 75 (176)
...-|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999985
No 399
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.37 E-value=0.01 Score=46.92 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999998765
No 400
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.37 E-value=0.0094 Score=43.90 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999987653
No 401
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.36 E-value=0.012 Score=46.66 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 51 PPQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 51 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
++....|+|+|.+|+|||||...+....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999999987753
No 402
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.35 E-value=0.013 Score=44.22 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998764
No 403
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.35 E-value=0.0091 Score=43.65 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 35568999999999999999988764
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.35 E-value=0.0091 Score=44.18 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|.+|+|||||...+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998753
No 405
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.35 E-value=0.028 Score=45.39 Aligned_cols=69 Identities=17% Similarity=0.007 Sum_probs=41.9
Q ss_pred eehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHHHHHHHHHH
Q 043562 35 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQILDIIITF 108 (176)
Q Consensus 35 G~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ll~~il~~ 108 (176)
|...-...|-.++. +=..-.++.|.|.+|+||||||..+..+. ..+=..++|++. .-+..++...++..
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~--a~~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSA--LNDDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHH--HHTTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 33333444555553 22234588999999999999999987762 222234566654 34556666666554
No 406
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.34 E-value=0.01 Score=42.88 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999987653
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.026 Score=40.50 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|.|+|..|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999854
No 408
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.33 E-value=0.01 Score=43.05 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..--|.|+|..|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34567899999999999999988763
No 409
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.33 E-value=0.0094 Score=44.39 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+|+|.|+.|+||||+|+.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.32 E-value=0.01 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999997653
No 411
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.31 E-value=0.011 Score=50.39 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.++|+.|.||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998654
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.31 E-value=0.01 Score=42.95 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987653
No 413
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.01 Score=42.66 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467899999999999999987653
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.29 E-value=0.0095 Score=48.28 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|..|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999987
No 415
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.29 E-value=0.01 Score=43.46 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998765
No 416
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.29 E-value=0.011 Score=42.68 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998754
No 417
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.0099 Score=43.89 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|+|+|..|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999988754
No 418
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.28 E-value=0.014 Score=46.13 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 47899999999999999999875
No 419
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.27 E-value=0.01 Score=43.17 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999987653
No 420
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.26 E-value=0.01 Score=42.87 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456799999999999999998764
No 421
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.26 E-value=0.01 Score=43.26 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999765
No 422
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.26 E-value=0.011 Score=43.26 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.0
Q ss_pred EEEEEE-cCCCCcHHHHHHHHhcC
Q 043562 55 SAVTIL-DSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~-G~gGiGKTtLA~~v~~~ 77 (176)
++|+|+ +-||+||||+|..+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~ 25 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA 25 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH
Confidence 578888 77999999999887654
No 423
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.26 E-value=0.011 Score=43.20 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|.|+|..|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999998765
No 424
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.25 E-value=0.021 Score=43.80 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-..|.|.|+.|+||||+++.+.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 425
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.25 E-value=0.015 Score=41.67 Aligned_cols=26 Identities=12% Similarity=0.035 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
...-|.|+|..|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 426
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.25 E-value=0.016 Score=43.59 Aligned_cols=40 Identities=18% Similarity=0.059 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCH
Q 043562 57 VTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYA 98 (176)
Q Consensus 57 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 98 (176)
|+|.|-||+||||+|..+.... ...=..+.-+......+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM--ASDYDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH--TTTCSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCcCh
Confidence 6779999999999999887652 222133455554333443
No 427
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.0077 Score=50.71 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||++.++.-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 357899999999999999998775
No 428
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.24 E-value=0.015 Score=43.49 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|+|-|.-|+||||+++.+++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999887
No 429
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.24 E-value=0.0047 Score=55.48 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=36.7
Q ss_pred CCCeeeehHHHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 30 SRDMVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 30 ~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|.+.-++.|.+.+... -.....+.++|++|+||||||+.+++.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 356889988888888776521 123356789999999999999999876
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.23 E-value=0.01 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 431
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=43.80 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|.|+|.+|+|||||...+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 432
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.22 E-value=0.024 Score=42.67 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..|.+.|..|+||||+++.+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 433
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.21 E-value=0.0097 Score=49.66 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043562 57 VTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 57 i~I~G~gGiGKTtLA~~v~~~ 77 (176)
++|+|..|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999764
No 434
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.01 Score=42.91 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.--|.|+|..|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346789999999999999998765
No 435
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.19 E-value=0.012 Score=42.99 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998864
No 436
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.19 E-value=0.015 Score=45.06 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998765
No 437
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.012 Score=42.60 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999865
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.15 E-value=0.013 Score=47.86 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999876
No 439
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.15 E-value=0.012 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|.|||||++.++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999875
No 440
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.15 E-value=0.011 Score=43.17 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987653
No 441
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.15 E-value=0.0083 Score=48.21 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHHHHHHHHHHhCCCCCccccCCCCCCchhhhhhhhh
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQILDIIITFLMPSSSRMVRADTDNEPSTNMGRPET 134 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~l 134 (176)
..++|+|+.|.|||||++.+..- +.. -...+.+.-....... .. ......-.. ........+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~--------~~--~~~i~~~~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFK--------HH--KNYTQLFFG-GNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCS--------SC--SSEEEEECB-TTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeeccccc--------cc--hhEEEEEeC-CChhHHHHHHHHh
Confidence 47899999999999999999876 322 2345555422211100 00 000000000 1122333446667
Q ss_pred CCCceEEEecCCCChhhhHHHhc
Q 043562 135 STSQRNIPTRDEYQPEEYTDQRR 157 (176)
Q Consensus 135 ~~kr~LlVLDDV~~~~~w~~i~~ 157 (176)
..+.=+|+||.+.+.+.++.+..
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~~ 260 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYNV 260 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHHH
T ss_pred hhCCCEEEEcCCChHHHHHHHHH
Confidence 77788888998888777766554
No 442
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.14 E-value=0.011 Score=42.23 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|.|+|..|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998754
No 443
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.14 E-value=0.053 Score=45.09 Aligned_cols=65 Identities=18% Similarity=-0.040 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccC-cccceEEEEcCCCCCHHHHHHHHHHHh
Q 043562 40 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKH-YFDCHAWVQEPYTCYADQILDIIITFL 109 (176)
Q Consensus 40 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~ll~~il~~l 109 (176)
...|-.++ .+=..-.++.|.|.+|+||||||..+..+ +.. .=..++|++.. .+..++...++...
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34454444 32233458899999999999999998876 322 12346777653 34556666665543
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.13 E-value=0.012 Score=50.42 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||++.+...
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 445
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.13 E-value=0.03 Score=46.49 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=34.7
Q ss_pred CeeeehHHHHHHHHHHhcC---------CCCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 32 DMVGLDDRMEELLDLLIEG---------PPQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.=.|.++-++.+.+.+... ......|+|+|.+|+|||||.+.+....
T Consensus 149 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 3456777777777766521 1234688999999999999999998763
No 446
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.13 E-value=0.012 Score=45.10 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-++|.|+.|+||||+|+.+.+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 346799999999999999998765
No 447
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.12 E-value=0.011 Score=42.42 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456799999999999999999865
No 448
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.11 E-value=0.026 Score=46.91 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.+++|+|+.|.|||||.+.+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999998765
No 449
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.012 Score=43.20 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999988753
No 450
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.10 E-value=0.014 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999998875
No 451
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.10 E-value=0.018 Score=46.89 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCcEEEEEEc-CCCCcHHHHHHHHhcC
Q 043562 52 PQLSAVTILD-SIGLDKTAFAAEAYSS 77 (176)
Q Consensus 52 ~~~~vi~I~G-~gGiGKTtLA~~v~~~ 77 (176)
.+.++|+|+| -||+||||+|..+...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH
Confidence 4678999985 8999999999887654
No 452
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.10 E-value=0.013 Score=50.23 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.-.+++|+|+.|+|||||.+.+...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999875
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.09 E-value=0.013 Score=42.95 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998765
No 454
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.08 E-value=0.015 Score=42.70 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|.|+|..|+|||||...+.++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 4567899999999999999887653
No 455
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.05 E-value=0.015 Score=48.88 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+|.++|+.|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998765
No 456
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.05 E-value=0.0098 Score=42.97 Aligned_cols=25 Identities=24% Similarity=0.049 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987663
No 457
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.03 E-value=0.013 Score=42.91 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|.|+|..|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567899999999999999998765
No 458
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.03 E-value=0.013 Score=43.06 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998765
No 459
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.03 E-value=0.0079 Score=43.00 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=10.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..-|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988765
No 460
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.02 E-value=0.013 Score=48.81 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043562 57 VTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 57 i~I~G~gGiGKTtLA~~v~~~ 77 (176)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999865
No 461
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.02 E-value=0.014 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 78999999999999999998753
No 462
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.99 E-value=0.014 Score=42.75 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
..-|.|+|..|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468899999999999999988653
No 463
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.98 E-value=0.017 Score=49.32 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.+.|+.|+||||+|+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 3468999999999999999999887
No 464
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.97 E-value=0.011 Score=43.86 Aligned_cols=26 Identities=4% Similarity=-0.018 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998774
No 465
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.95 E-value=0.013 Score=48.91 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-..++|+|..|+|||||++.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999886
No 466
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.95 E-value=0.014 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.|-+.|.||+||||+|..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4778899999999998887765
No 467
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.94 E-value=0.015 Score=43.19 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4467899999999999999987653
No 468
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.92 E-value=0.017 Score=49.98 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.|.|+.|+||||+|+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998775
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.92 E-value=0.015 Score=50.63 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999875
No 470
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.92 E-value=0.023 Score=40.85 Aligned_cols=25 Identities=16% Similarity=-0.013 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...-|.|+|..|+|||||...+...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4556899999999999999998654
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.015 Score=50.62 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||.+.+...
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 358999999999999999998764
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.015 Score=50.57 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||++.++.-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999875
No 473
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.018 Score=43.14 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999874
No 474
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.83 E-value=0.022 Score=43.49 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
....|+|+|..|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999987653
No 475
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.81 E-value=0.019 Score=45.42 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
+...|+|+|.+|+|||||...+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45679999999999999999987653
No 476
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.81 E-value=0.017 Score=50.52 Aligned_cols=25 Identities=16% Similarity=0.031 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|.+.|+.|+||||+|+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998775
No 477
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.79 E-value=0.013 Score=42.97 Aligned_cols=23 Identities=13% Similarity=-0.087 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++.|+|+.|+||||++..+..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999766554
No 478
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.79 E-value=0.016 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 358999999999999999998764
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.79 E-value=0.016 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|+|||||++.+...
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 358999999999999999999864
No 480
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.78 E-value=0.0089 Score=51.86 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCeeeehHHHHHHHHHHhcCCCC---------cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIEGPPQ---------LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~~~~~---------~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..++|.+.-+..+.-.|..+... -.-|-++|++|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 56899988666654444433100 014789999999999999998876
No 481
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.78 E-value=0.032 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYS 76 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~ 76 (176)
..+++.+.|.||+||||+|..+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 467888999999999999887654
No 482
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.74 E-value=0.025 Score=42.46 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
...+|+|+||.|+||+|+|..+.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 4579999999999999999988653
No 483
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.74 E-value=0.017 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 484
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.72 E-value=0.037 Score=42.92 Aligned_cols=26 Identities=8% Similarity=0.210 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
....|+|+|..|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45679999999999999999998764
No 485
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.70 E-value=0.017 Score=44.73 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
--|+|+|.+|+|||||...++...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999976543
No 486
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.68 E-value=0.02 Score=43.02 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=31.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCHHHHHHHH
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYADQILDII 105 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ll~~i 105 (176)
.-.++-|.|.+|+|||+||.++..+. ....-..+++++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 34588899999999999999865431 122223455665433 344555443
No 487
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.67 E-value=0.021 Score=43.74 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567999999999999999987654
No 488
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.66 E-value=0.019 Score=43.15 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4689999999999999988765
No 489
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.64 E-value=0.016 Score=51.22 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=30.8
Q ss_pred eeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 34 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 34 vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
-+....++.|...+..-......|+|+|..|+|||||...+....
T Consensus 49 ~~l~~~l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 49 LSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555556655443211134578999999999999999998764
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.02 Score=42.59 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.--|.|+|..|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987653
No 491
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.63 E-value=0.058 Score=43.84 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhhhhCC-CCCCCCCCeeeehHHHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 8 DSEIIDAIKTFEAEAGI-SSSSKSRDMVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 8 ~~~~~d~i~~~~~~~~~-~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++...+...-..... ........++|....+.++...+..-......+.|.|.+|+||+++|+.++..
T Consensus 105 ~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 105 VERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHh
Confidence 35566666543322221 11113356889888777777666531112234668999999999999999875
No 492
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.63 E-value=0.052 Score=53.18 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=45.3
Q ss_pred CeeeehHHHHHHHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCcCccCcccceEEEEcCCCCCH
Q 043562 32 DMVGLDDRMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWVQEPYTCYA 98 (176)
Q Consensus 32 ~~vG~~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 98 (176)
...+...-...|-.+|. .+=..-.++-|.|.+|+||||||.++... ....=..++|++.....+.
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~ 425 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDP 425 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCH
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHH
Confidence 34555555566777765 33234568999999999999999999876 3333245788887776664
No 493
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.62 E-value=0.016 Score=45.54 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 043562 52 PQLSAVTILDSIGLDKTAFAAEAYSSN 78 (176)
Q Consensus 52 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 78 (176)
.....|+|+|..|+|||||...+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 356789999999999999999997653
No 494
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.62 E-value=0.042 Score=44.22 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 53 QLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 53 ~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
..+++.+.|-||+||||+|..+...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~ 39 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQ 39 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHH
Confidence 3567788899999999999887654
No 495
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.57 E-value=0.019 Score=51.58 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCeeeehHHHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 043562 31 RDMVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 31 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.++.|.++.+++|.+.+.- +-...+-+-++|++|.|||.||+++++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 4677899888888776542 1123345779999999999999999987
No 496
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.55 E-value=0.048 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043562 56 AVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999988766
No 497
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.55 E-value=0.022 Score=42.40 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=18.0
Q ss_pred EEEEE-cCCCCcHHHHHHHHhcC
Q 043562 56 AVTIL-DSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 56 vi~I~-G~gGiGKTtLA~~v~~~ 77 (176)
+|+|+ +-||+||||+|..+..-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~ 24 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY 24 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Confidence 56775 78999999999988654
No 498
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.53 E-value=0.029 Score=39.62 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh
Q 043562 54 LSAVTILDSIGLDKTAFAAEAY 75 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~ 75 (176)
..+..|+|+.|.||||+..+++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999998875
No 499
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.52 E-value=0.0092 Score=47.64 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 043562 55 SAVTILDSIGLDKTAFAAEAYSS 77 (176)
Q Consensus 55 ~vi~I~G~gGiGKTtLA~~v~~~ 77 (176)
.+++|+|+.|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48899999999999999998764
No 500
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.52 E-value=0.027 Score=47.03 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcCccCc-ccceEEEEcCCCCCHHHHHHHHH
Q 043562 54 LSAVTILDSIGLDKTAFAAEAYSSNYVKHY-FDCHAWVQEPYTCYADQILDIII 106 (176)
Q Consensus 54 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~ll~~il 106 (176)
-.++.|.|.+|+||||||..+..+ +... =..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 458999999999999999998876 3221 12466776433 3445555543
Done!