BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043567
(911 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 242 bits (617), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 223/727 (30%), Positives = 345/727 (47%), Gaps = 110/727 (15%)
Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFING---SLESQGICELKNLFVLNLEKNNIE 244
L ++I GS + G +L +LDLS N ++G +L S G C L LN+ N ++
Sbjct: 84 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS--GLKFLNVSSNTLD 139
Query: 245 DHLPNCLNN---MTRLKVLDISFNQLSGSFPSIISNLTS-----LEYLALFDNNFEGTFP 296
P ++ + L+VLD+S N +SG+ +++ + S L++LA+ N G
Sbjct: 140 --FPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD 195
Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
+S N LE L +S+ N F + L +CS L++
Sbjct: 196 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 227
Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGK 416
LD+S N L G F + A+ T+L++L +++N F G +P L +L ++ N FTG+
Sbjct: 228 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 284
Query: 417 LPQDMGIILQKLLYMDMSNNHFEGNIAS-------------------------SIAEMKE 451
+P + L +D+S NHF G + ++ +M+
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 452 LRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQ-----LQYLYL 506
L+ LDLS N FSGEL +L SLL L LS NNF G I P NL Q LQ LYL
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 401
Query: 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQ 566
+NN F+GKI L +LV L +S N LSG IP +G+LS L L + N EG IP +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 567 LLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
L+ + L+ + N L+G + + N +++ + L N L+G IP + R NL L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 626 RDNGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
+N FSG IP ++ +C L +DL+ N FNG+IP+
Sbjct: 522 SNNSFSGNIPAELGDCRS------------------------LIWLDLNTNLFNGTIPAA 557
Query: 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745
+ N + +++ + ++L+ + SE+ + +
Sbjct: 558 MFKQSGKIAANFIAGK--RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPES 805
+ N M+ LD+S N L+G IP EIG + + +LN+ HN +S SIP+
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 806 FSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYR 865
+L+ + LDLS N+L G+IP ++ L L+ ++S NNLSG IP+ GQF TF + +
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 866 GNLHLCG 872
N LCG
Sbjct: 736 NNPGLCG 742
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 195/639 (30%), Positives = 278/639 (43%), Gaps = 95/639 (14%)
Query: 122 VSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD----DSIFLYL 177
VS F L SLDLS NS G +LGS LK LN+ N D S L L
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPV--TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150
Query: 178 NALTSLTTLILRENNIQGSRT-----KQGLSKLKNLEALDLSSNFINGSLESQGICELKN 232
N SL L L N+I G+ G +LK+L +S N I+G ++ + N
Sbjct: 151 N---SLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD---VSRCVN 201
Query: 233 LFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
L L++ NN +P L + + L+ LDIS N+LSG F IS T L+ L + N F
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 293 GTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF--QLKVLRLP-NCSLNVIPPFLL 349
G P L + LS N + +FL L L L N +PPF
Sbjct: 261 GPIPPLPLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 350 HQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF---LHHL 406
L+ L LS N+ G P L L+VL L+ N F+G +LP+ + L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTL 373
Query: 407 DISSNNFTGK----LPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
D+SSNNF+G L Q+ LQ+L + NN F G I +++ EL L LS N
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELY---LQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 463 SGELSAAL--LTSCFSL-LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL 519
SG + ++L L+ L LWL N G I M + L+ L L+ N +G+I GL
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWL----NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 520 LKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS 579
L + +S+N L+G IP W+G L L +L +S N F GNIP +L + R L ++
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 580 ENYLSGFMTTSFN----------ISSVEHLYL------------------------QKNS 605
N +G + + I+ ++Y+ Q N
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 606 LSGPIPIALFR-------------SSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXX 652
LS P + + +++ LD+ N SG IP +I
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 653 XXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITL 691
G IP+++ L GL ++DLS NK +G IP + +T+
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 143/339 (42%), Gaps = 52/339 (15%)
Query: 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTT 185
+P LQ L L NN F G + TL + L L+L +NY +I L +L+ L
Sbjct: 391 NPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
L L N ++G Q L +K LE L L N + G + S G+ NL ++L N +
Sbjct: 447 LKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTG 504
Query: 246 HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSK 305
+P + + L +L +S N SG+ P+ + + SL +L L N F GT P + K
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 306 LEVLLLSTR-----------------NNMLQVQ-----------TENFL----------- 326
+ ++ + N+L+ Q T N
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 327 -PTFQLK-VLRLPNCSLNVIPPFLLHQFD----LKYLDLSHNDLDGAFPTWALQNNTKLE 380
PTF + + S N++ ++ + L L+L HND+ G+ P + + L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLN 683
Query: 381 VLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQ 419
+L L++N G + L +D+S+NN +G +P+
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNI 193
LD+S N G + +GS+ L ILNLG+N SI + L L L L N +
Sbjct: 637 LDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 194 QGSRTKQGLSKLKNLEALDLSSNFINGSLESQG 226
G R Q +S L L +DLS+N ++G + G
Sbjct: 693 DG-RIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 241 bits (616), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 225/730 (30%), Positives = 346/730 (47%), Gaps = 116/730 (15%)
Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFING---SLESQGICELKNLFVLNLEKNNIE 244
L ++I GS + G +L +LDLS N ++G +L S G C L LN+ N ++
Sbjct: 81 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS--GLKFLNVSSNTLD 136
Query: 245 DHLPNCLNN---MTRLKVLDISFNQLSGSFPSIISNLTS-----LEYLALFDNNFEGTFP 296
P ++ + L+VLD+S N +SG+ +++ + S L++LA+ N G
Sbjct: 137 --FPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD 192
Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
+S N LE L +S+ N F + L +CS L++
Sbjct: 193 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 224
Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGK 416
LD+S N L G F + A+ T+L++L +++N F G +P L +L ++ N FTG+
Sbjct: 225 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 281
Query: 417 LPQDMGIILQKLLYMDMSNNHFEGNIAS-------------------------SIAEMKE 451
+P + L +D+S NHF G + ++ +M+
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 452 LRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQ-----LQYLYL 506
L+ LDLS N FSGEL +L SLL L LS NNF G I P NL Q LQ LYL
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 398
Query: 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQ 566
+NN F+GKI L +LV L +S N LSG IP +G+LS L L + N EG IP +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 567 LLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
L+ + L+ + N L+G + + N +++ + L N L+G IP + R NL L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 626 RDNGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
+N FSG IP ++ +C L +DL+ N FNG+IP+
Sbjct: 519 SNNSFSGNIPAELGDCRS------------------------LIWLDLNTNLFNGTIPAA 554
Query: 686 FTNITLWSVGNL---DRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL 742
+ N RY +++ + ++L+ + SE+ +
Sbjct: 555 MFKQSGKIAANFIAGKRY-----VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 743 VEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI 802
+ + N M+ LD+S N L+G IP EIG + + +LN+ HN +S SI
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 803 PESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDES 862
P+ +L+ + LDLS N+L G+IP ++ L L+ ++S NNLSG IP+ GQF TF +
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 729
Query: 863 SYRGNLHLCG 872
+ N LCG
Sbjct: 730 KFLNNPGLCG 739
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 195/639 (30%), Positives = 278/639 (43%), Gaps = 95/639 (14%)
Query: 122 VSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD----DSIFLYL 177
VS F L SLDLS NS G +LGS LK LN+ N D S L L
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPV--TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 147
Query: 178 NALTSLTTLILRENNIQGSRT-----KQGLSKLKNLEALDLSSNFINGSLESQGICELKN 232
N SL L L N+I G+ G +LK+L +S N I+G ++ + N
Sbjct: 148 N---SLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD---VSRCVN 198
Query: 233 LFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
L L++ NN +P L + + L+ LDIS N+LSG F IS T L+ L + N F
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 293 GTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF--QLKVLRLP-NCSLNVIPPFLL 349
G P L + LS N + +FL L L L N +PPF
Sbjct: 258 GPIPPLPLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 350 HQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF---LHHL 406
L+ L LS N+ G P L L+VL L+ N F+G +LP+ + L L
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTL 370
Query: 407 DISSNNFTGK----LPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
D+SSNNF+G L Q+ LQ+L + NN F G I +++ EL L LS N
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELY---LQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 463 SGELSAAL--LTSCFSL-LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL 519
SG + ++L L+ L LWL N G I M + L+ L L+ N +G+I GL
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWL----NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 520 LKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS 579
L + +S+N L+G IP W+G L L +L +S N F GNIP +L + R L ++
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 580 ENYLSGFMTTSFN----------ISSVEHLYL------------------------QKNS 605
N +G + + I+ ++Y+ Q N
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 606 LSGPIPIALFR-------------SSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXX 652
LS P + + +++ LD+ N SG IP +I
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 653 XXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITL 691
G IP+++ L GL ++DLS NK +G IP + +T+
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 143/339 (42%), Gaps = 52/339 (15%)
Query: 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTT 185
+P LQ L L NN F G + TL + L L+L +NY +I L +L+ L
Sbjct: 388 NPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
L L N ++G Q L +K LE L L N + G + S G+ NL ++L N +
Sbjct: 444 LKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTG 501
Query: 246 HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSK 305
+P + + L +L +S N SG+ P+ + + SL +L L N F GT P + K
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 306 LEVLLLSTR-----------------NNMLQVQ-----------TENFL----------- 326
+ ++ + N+L+ Q T N
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 327 -PTFQLK-VLRLPNCSLNVIPPFLLHQFD----LKYLDLSHNDLDGAFPTWALQNNTKLE 380
PTF + + S N++ ++ + L L+L HND+ G+ P + + L
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLN 680
Query: 381 VLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQ 419
+L L++N G + L +D+S+NN +G +P+
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNI 193
LD+S N G + +GS+ L ILNLG+N SI + L L L L N +
Sbjct: 634 LDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 194 QGSRTKQGLSKLKNLEALDLSSNFINGSLESQG 226
G R Q +S L L +DLS+N ++G + G
Sbjct: 690 DG-RIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 35/250 (14%)
Query: 628 NGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT 687
N G IP I + + G IP+ + Q+ L +D S+N +G++P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 688 NITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF 747
++ N +GI + G + +F L
Sbjct: 147 SLP-----------------------NLVGITFDGNRISGAIPDSYG---SFSKLFTSMT 180
Query: 748 VTKNRY-----EVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI 802
+++NR + NL ++ DLS N L G+ G + ++++ N L+ +
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 803 PESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDES 862
+ + K + LDL +NR+ G +P LT+L FL + NVS+NNL G IP G FD S
Sbjct: 238 GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 863 SYRGNLHLCG 872
+Y N LCG
Sbjct: 297 AYANNKCLCG 306
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 11/217 (5%)
Query: 485 NNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG 544
NN G I P LTQL YLY+ + SG I + L + K LV L S N LSG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 545 NLSYLEVLLMSKNFFEGNIPVQLLNHRRL-QLFSVSENYLSGFMTTSFNISSVEHLYLQK 603
+L L + N G IP + +L ++S N L+G + +F ++ + L +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQIC 663
N L G + N + L N + + ++ G +P +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 664 QLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRY 700
QL L +++S N G IP GNL R+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQG---------GNLQRF 293
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 93/234 (39%), Gaps = 49/234 (20%)
Query: 226 GICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA 285
I +L L L + N+ +P+ L+ + L LD S+N LSG+ P IS+L +L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIP 345
N G P S + SKL + +RN + T PTF
Sbjct: 156 FDGNRISGAIP-DSYGSFSKLFTSMTISRNRL----TGKIPPTFA--------------- 195
Query: 346 PFLLHQFDLKYLDLSHNDLDG----------------------AFPTWALQNNTKLEVLL 383
+L ++DLS N L+G AF + + L L
Sbjct: 196 -----NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250
Query: 384 LTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH 437
L NN G L + FLH L++S NN G++PQ G LQ+ +NN
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 119/300 (39%), Gaps = 61/300 (20%)
Query: 539 IPHWMGNLSYLEVLLMSK-NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVE 597
IP + NL YL L + N G IP + ++ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-----------------------LTQLH 104
Query: 598 HLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXXEGQ 657
+LY+ ++SG IP L + L+TLD N SG +P I+ G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 658 IPNQICQLTGL-GMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLE---HLTFVERLDV 713
IP+ + L M +S N+ G IP F N+ L V +L R LE + F +
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV-DLSRNMLEGDASVLFGSDKNT 223
Query: 714 NSIGIYYSSM-LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCN 772
I + +S+ D+G++ ++KN + GLDL N
Sbjct: 224 QKIHLAKNSLAFDLGKVG-----------------LSKN------------LNGLDLRNN 254
Query: 773 KLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR-LSGQIPPKLT 831
++ G +P + +L+ + LN+S N L IP+ NL+ + ++N+ L G P T
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
L +N++ K GLSK NL LDL +N I G+L QG+ +LK L LN+ NN+ +
Sbjct: 228 LAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEI 284
Query: 248 PNCLNNMTRLKV 259
P N+ R V
Sbjct: 285 PQG-GNLQRFDV 295
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 35/140 (25%)
Query: 87 NATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYE 146
N TG++ N F++ S+N GD + LF + Q + L+ NS
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASV-----LFGSDKNTQKIHLAKNSL----- 233
Query: 147 NQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLK 206
A+D LG + K LN L LR N I G+ QGL++LK
Sbjct: 234 --AFD-LGKVGLSKNLN---------------------GLDLRNNRIYGT-LPQGLTQLK 268
Query: 207 NLEALDLSSNFINGSLESQG 226
L +L++S N + G + G
Sbjct: 269 FLHSLNVSFNNLCGEIPQGG 288
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 128/312 (41%), Gaps = 61/312 (19%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F +LQ LDL+ +G+ + L LK L L N+FD + SLT
Sbjct: 271 FQCFTQLQELDLTATHLKGLPSG-----MKGLNLLKKLVLSVNHFDQLCQISAANFPSLT 325
Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGS----------------------- 221
L +R N + L KL NL+ LDLS N I S
Sbjct: 326 HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 222 --LESQGICELKNLFVLNLEKNNIEDHLPNC-LNNMTRLKVLDISFNQLSGSFPSIISNL 278
L+SQ E L +L+L + + P N+ L+VL++++ L S +++ L
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 279 TSLEYLALFDNNFE-GTFPLSSLANH-SKLEVLLLST----------------------R 314
L +L L N+F+ GT ++L LEVL+LS+
Sbjct: 446 PVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLS 505
Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK-YLDLSHNDLDGA-----F 368
+N L + + L + L L S+N+I P LL + ++LSHN LD F
Sbjct: 506 HNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHF 565
Query: 369 PTWALQNNTKLE 380
TW +N KLE
Sbjct: 566 LTWYKENLHKLE 577
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 157/380 (41%), Gaps = 76/380 (20%)
Query: 127 PFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN----------YFDDSIFLY 176
P L+ LD NN+ + + + + SL++ L+L +N FD +IF
Sbjct: 148 PARNLKVLDFQNNAIHYI----SREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQS 203
Query: 177 LNALTSLTTLILRENNIQGSRTKQ-GLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
LN L + N +Q S T+ L ++++ D+SS + +G+CE+ ++
Sbjct: 204 LN-FGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAML------KGLCEM-SVES 255
Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
LNL+++ D T+L+ LD++ L G PS + L L+ L L N+F+
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD--- 311
Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK 355
+ Q+ NF P+ +R L++ L +L+
Sbjct: 312 --------------------QLCQISAANF-PSLTHLYIRGNVKKLHLGVGCLEKLGNLQ 350
Query: 356 YLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
LDLSHND++ + + L+N + L+ L L++N G + L LD++
Sbjct: 351 TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 415 GKLPQD-------MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS---- 463
PQ + ++ ++D SN H +A + LR L+L N+F
Sbjct: 411 INAPQSPFQNLHFLQVLNLTYCFLDTSNQHL-------LAGLPVLRHLNLKGNHFQDGTI 463
Query: 464 ---------GELSAALLTSC 474
G L +L+SC
Sbjct: 464 TKTNLLQTVGSLEVLILSSC 483
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 162 LNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSK-LKNLEALDLSSNFING 220
LN N F DS+F + L L TLIL+ N ++ ++K + +LE LD+S N +N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 221 SLESQGICELKNLFVLNLEKNNIEDHLPNCL---------------------NNMTRLKV 259
+ +++ VLNL N + + CL ++ L+
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
Query: 260 LDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
L+++ NQL + LTSL+Y+ L DN ++ T P
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 760 NLDYMVGLDLSCNKLTGEIPSEIGELQE-IPVLNMSHNFLSESIPESFSNLKMIESLDLS 818
N+ + LD+S N L E I VLN+S N L+ S+ ++ LDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458
Query: 819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852
+NR+ IP +T L L NV+ N L +PD
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 378 KLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIS--SNNFTGKLPQDMGIILQKLLYMDMSN 435
+ + L L+ NS + L++PD FL L + S+N L + + Q L Y+D+S+
Sbjct: 53 RTKALSLSQNSIS-ELRMPDI--SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 436 NHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF 487
N + NI S M LR LDLS N+F + L +LGLS F
Sbjct: 110 NRLQ-NI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 766 GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
L LS N ++ +I L E+ VL +SHN + F + +E LD+SHNRL
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 826 IPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRG 866
+ L + ++S+N+ ++P +F + ++ G
Sbjct: 116 ---SCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLG 152
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 162 LNLGYNYFDDSIFLYLNALTSLTTLILRENNIQG-SRTKQGLSKLKNLEALDLSSNFING 220
L+ N D++F LT L TLIL+ N ++ S+ + +++K+L+ LD+S N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 221 SLESQGICEL-KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLT 279
E +G C K+L LN+ N + D + CL R+KVLD+ N++ S P + L
Sbjct: 389 D-EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE 444
Query: 280 SLEYLALFDNNFEGT 294
+L+ L + N +
Sbjct: 445 ALQELNVASNQLKSV 459
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 103/441 (23%), Positives = 181/441 (41%), Gaps = 44/441 (9%)
Query: 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTT 185
HP L+ LDLS N+F+ + + + G++ +LK L L + + S L + L
Sbjct: 87 HPTVNLKHLDLSFNAFDALPICKEF---GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Query: 186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
L++ +GL N E+L + + E I ++ V NLE +NI+
Sbjct: 144 LLVLGETYGEKEDPEGLQDF-NTESLHI---VFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 246 HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA-LFDNNFEGTFPLSSLANHS 304
L + N+ S F SI++ L + L+ L NN E T+ +S
Sbjct: 200 VLED---------------NKCS-YFLSILAKLQTNPKLSNLTLNNIETTW-------NS 236
Query: 305 KLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDL 364
+ +L L + N QL R + S + +HQ + +
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLD-FRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 365 DGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII 424
F ++N T + + ++ P FLH LD S+N T + ++ G +
Sbjct: 296 YEIFSNMNIKNFT-------VSGTRMVHMLCPSKISPFLH-LDFSNNLLTDTVFENCGHL 347
Query: 425 LQ-KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS 483
+ + L + M+ IA +MK L+ LD+S+N+ S + + SLL L +S
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407
Query: 484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWM 543
N IF +++ L L +NK I + ++K + L EL ++SN L
Sbjct: 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIF 464
Query: 544 GNLSYLEVLLMSKNFFEGNIP 564
L+ L+ + + N ++ + P
Sbjct: 465 DRLTSLQKIWLHTNPWDCSCP 485
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 767 LDLSCNKLT-GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
LD+S N ++ E + + + LNMS N L+++I I+ LDL N++
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS- 435
Query: 826 IPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEI 885
IP ++ +L L NV+ N L +PD FD + + L + SC ++ +
Sbjct: 436 IPKQVVKLEALQELNVASNQLKS-VPD----GIFDRLTSLQKIWLHTNPWDCSCPRIDYL 490
Query: 886 PA---TDSNREEG 895
+S +E+G
Sbjct: 491 SRWLNKNSQKEQG 503
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 120/283 (42%), Gaps = 31/283 (10%)
Query: 373 LQNNTKLEVLLLTN-----NSFTGNLQLPDDKHDFLHHLDISSNNFTGKLP-QDM---GI 423
LQ N KL L L N NSF LQL H + + IS+ G+L +D G
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGT 273
Query: 424 ILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFS----LLW 479
L+ L + ++ F G S I E+ F +++ NF+ + + C S L
Sbjct: 274 SLKALSIHQVVSDVF-GFPQSYIYEI----FSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328
Query: 480 LGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS--GKIEEGLLKSKKLVELRMSSNMLSG 537
L S+N +F +LT+L+ L L+ N+ KI E + K L +L +S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 538 HIPHWMGNLSYLEVLL---MSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNIS 594
G+ S+ + LL MS N I L R+++ + N + +
Sbjct: 388 -YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLE 444
Query: 595 SVEHLYLQKNSLSGPIPIALF-RSSNLLTLDLRDNGFSGVIPH 636
+++ L + N L +P +F R ++L + L N + P
Sbjct: 445 ALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
+ + + + ++ + F L+ LDLS+N+ V + + LG L L + G
Sbjct: 61 WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELG 120
Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
+F L +L L L++NN+Q + L NL L L N I S+ L
Sbjct: 121 PGLF---RGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGL 175
Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
+L L L +N++ P+ ++ RL L + N LS ++ L SL+YL L DN
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 50/223 (22%), Positives = 82/223 (36%), Gaps = 29/223 (13%)
Query: 361 HNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQD 420
H + P + Q+ L +L L +N+ G I + FTG
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAG----------------IDAAAFTG----- 77
Query: 421 MGIILQKLLYMDMSNN-HFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLW 479
L L +D+S+N ++ + L L L + EL L +L +
Sbjct: 78 ----LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQY 132
Query: 480 LGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHI 539
L L DNN + +L L +L+L N+ E L L + N ++
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 540 PHWMGNLSYLEVLLMSKNFFEGNIPVQ-LLNHRRLQLFSVSEN 581
PH +L L L + N +P + L+ R LQ +++N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDN 234
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 59/167 (35%), Gaps = 26/167 (15%)
Query: 443 ASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDN---------NFYG---- 489
A+S + L L L N +G + AA T L L LSDN F G
Sbjct: 48 AASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHL 106
Query: 490 -----------RIFPG-YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG 537
+ PG + L LQYLYL++N + L L + N +
Sbjct: 107 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166
Query: 538 HIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS 584
H L L+ LL+ +N P + RL + N LS
Sbjct: 167 VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 132/318 (41%), Gaps = 63/318 (19%)
Query: 120 LNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNA 179
L+ S F F +Q LDL+ G+ + + SLK+L L N FD + +
Sbjct: 268 LSSSTFRCFTRVQELDLTAAHLNGLPS--GIEGMNSLKKLV---LNANSFDQLCQINAAS 322
Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGS------------------ 221
SL L ++ N + + L KL+NL+ LDLS + I S
Sbjct: 323 FPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 222 -------LESQGICELKNLFVLNLEKNNIEDHLPNC-LNNMTRLKVLDISFNQLSGSFPS 273
LE Q E L +L++ ++ P+ N+ L+VL++S L S
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQH 442
Query: 274 IISNLTSLEYLALFDNNFE-GTFPLSSLANH-SKLEVLLLSTRNNMLQVQTENFLPTFQL 331
+++ L L +L L N+F+ G+ ++L LE+L+LS+ N+L + + F +
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSC-NLLSIDQQAFHGLRNV 501
Query: 332 KVLRLPNCSL-----------------------NVIPPFLLHQFDLK-YLDLSHNDLDGA 367
L L + SL +IPP LL + ++LSHN LD
Sbjct: 502 NHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCT 561
Query: 368 -----FPTWALQNNTKLE 380
F TW +N KLE
Sbjct: 562 CSNIHFITWYKENLHKLE 579
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 30/336 (8%)
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
+G+C++ ++ +NL+K+ D + TR++ LD++ L+G PS I + SL+ L
Sbjct: 248 EGLCDM-SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKL 305
Query: 285 ALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI 344
L N+F+ +++ A+ L L + + NM ++ L T L+ L
Sbjct: 306 VLNANSFDQLCQINA-ASFPSLRDLYI--KGNMRKLD----LGTRCLEKLE--------- 349
Query: 345 PPFLLHQFDLKYLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL 403
+L+ LDLSH+D++ + L+N L+ L L+ N G + L
Sbjct: 350 --------NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQL 401
Query: 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
LD++ + K P L L +++S+ + + +A +++LR L+L N+F
Sbjct: 402 ELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 464 -GELSAA-LLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLK 521
G +S LL SL L LS N + L + +L L +N +G + L
Sbjct: 462 DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSH 521
Query: 522 SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
K L L M+SN + PH + LS ++ +S N
Sbjct: 522 LKGLY-LNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 130 ELQSLD--LSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
EL S+D ++NNS + ++ + L ++ L LG N D L LT+LT LI
Sbjct: 39 ELNSIDQIIANNS-----DIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLI 91
Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
L N +Q S KL NL+ L L N + SL +L NL LNL N ++
Sbjct: 92 LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
+ +T L LD+S+NQL + LT L+ L L+ N +
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 353 DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLD--ISS 410
+++YL L N L AL+ T L L+LT N LP+ D L +L +
Sbjct: 64 NVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLV 117
Query: 411 NNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL 470
N LP + L L Y+++++N + ++ L LDLS N L +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV 176
Query: 471 LTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKF 511
L L L N + LT LQY++L +N +
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 19/218 (8%)
Query: 133 SLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENN 192
S+D S+ + N DT K L+L N + LT L L L +N
Sbjct: 20 SVDCSSKKLTAIPSNIPADT-------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 193 IQGSRTKQGLSK-LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCL 251
+Q G+ K LKNLE L ++ N + +L +L NL L L++N ++ P
Sbjct: 73 LQ--TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 252 NNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLL 311
+++T+L L + +N+L + LTSL+ L L++N + P + ++L+ L L
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL 188
Query: 312 STRNNMLQVQTENFLPTFQ-LKVLRLP----NCSLNVI 344
NN L+ E + + LK+L+L +C+ N I
Sbjct: 189 D--NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 9/184 (4%)
Query: 353 DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDI--SS 410
D K LDL N L + P+ A TKL +L L +N LP L +L+ +
Sbjct: 38 DTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVT 93
Query: 411 NNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL 470
+N LP + L L + + N + + +L +L L N L +
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGV 152
Query: 471 LTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELR 529
SL L L +N + LT+L+ L L+NN+ ++ EG S +KL L+
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211
Query: 530 MSSN 533
+ N
Sbjct: 212 LQEN 215
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
+L + N+ + ++ L ++ L+A L I+G + L NL +N N + D
Sbjct: 25 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
P L N+T+L + ++ NQ++ P ++NLT+L L LF+N PL +L N ++L
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
E+ + N + + + L + Q L N ++ P L + L+ LD+S N +
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLNFGNQVTDLKP--LANLTTLERLDISSNKVSD 186
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
L T LE L+ TNN + L L +LD S G +D+G +
Sbjct: 187 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 236
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
L L +D++NN N+A ++ + +L L L N S A LT+
Sbjct: 237 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 294
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
+L +L L NN I P +LT+LQ L+ NNK S
Sbjct: 295 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFSNNKVS 339
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYE--------------NQAYD--TLGSLKRLKILNL 164
++S+ L+SL +NN + NQ D TL SL L L+L
Sbjct: 186 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 245
Query: 165 GYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
N + L+ LT LT L L N I GL+ L NLE L+ N + +
Sbjct: 246 ANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLE---DI 297
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
I LKNL L L NNI D P ++++T+L+ L S N++S S ++NLT++ +L
Sbjct: 298 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWL 353
Query: 285 ALFDNNFEGTFPLSSLANHSKL 306
+ N PL++L ++L
Sbjct: 354 SAGHNQISDLTPLANLTRITQL 375
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
+ + +++ ++ + F L+ LDLS+N+ + + LG L L + G
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
+F L +L L L++N +Q + L NL L L N I+ S+ + L
Sbjct: 122 PGLF---RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 176
Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
+L L L +N + P+ ++ RL L + N LS ++ L +L+YL L DN
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 44/117 (37%)
Query: 465 ELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKK 524
EL L +L +L L DN + +L L +L+L N+ S E
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 525 LVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN 581
L L + N ++ PH +L L L + N L R LQ +++N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
+L + N+ + ++ L ++ L+A L I+G + L NL +N N + D
Sbjct: 29 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 82
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
P L N+T+L + ++ NQ++ P ++NLT+L L LF+N PL +L N ++L
Sbjct: 83 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 138
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
E+ + N + + + L + Q L N ++ P L + L+ LD+S N +
Sbjct: 139 EL----SSNTISDISALSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSD 190
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
L T LE L+ TNN + L L +LD S G +D+G +
Sbjct: 191 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 240
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
L L +D++NN N+A ++ + +L L L N S A LT+
Sbjct: 241 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 298
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
+L +L L NN I P +LT+LQ L+ NNK S
Sbjct: 299 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFANNKVS 343
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYE--------------NQAYD--TLGSLKRLKILNL 164
++S+ L+SL +NN + NQ D TL SL L L+L
Sbjct: 190 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 249
Query: 165 GYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
N + L+ LT LT L L N I GL+ L NLE L+ N + +
Sbjct: 250 ANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLE---DI 301
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
I LKNL L L NNI D P ++++T+L+ L + N++S S ++NLT++ +L
Sbjct: 302 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWL 357
Query: 285 ALFDNNFEGTFPLSSLANHSKL 306
+ N PL++L ++L
Sbjct: 358 SAGHNQISDLTPLANLTRITQL 379
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
+ + +++ ++ + F L+ LDLS+N+ + + LG L L + G
Sbjct: 61 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 120
Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
+F L +L L L++N +Q + L NL L L N I+ S+ + L
Sbjct: 121 PGLF---RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 175
Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
+L L L +N + P+ ++ RL L + N LS ++ L +L+YL L DN
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 44/117 (37%)
Query: 465 ELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKK 524
EL L +L +L L DN + +L L +L+L N+ S E
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 177
Query: 525 LVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN 581
L L + N ++ PH +L L L + N L R LQ +++N
Sbjct: 178 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 52/347 (14%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
+L + N+ + ++ L ++ L+A L I+G + L NL +N N + D
Sbjct: 25 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
P L N+T+L + ++ NQ++ P ++NLT+L L LF+N PL +L N ++L
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
E+ + N + + + L + Q L + + + P L + L+ LD+S N +
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLSFSSNQVTDLKP-LANLTTLERLDISSNKVSD 187
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
L T LE L+ TNN + L L +LD S G +D+G +
Sbjct: 188 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 237
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
L L +D++NN N+A ++ + +L L L N S A LT+
Sbjct: 238 LTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
+L +L L NN I P +LT+LQ L+ NNK S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFSNNKVS 340
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYE--------------NQAYD--TLGSLKRLKILNL 164
++S+ L+SL +NN + NQ D TL SL L L+L
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 165 GYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
N + L+ LT LT L L N I GL+ L NLE L+ N + +
Sbjct: 247 ANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLE---DI 298
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
I LKNL L L NNI D P ++++T+L+ L S N++S S ++NLT++ +L
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWL 354
Query: 285 ALFDNNFEGTFPLSSLANHSKL 306
+ N PL++L ++L
Sbjct: 355 SAGHNQISDLTPLANLTRITQL 376
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 760 NLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819
NL + L+LS N ++ S + L + L+ S N +++ P +NL +E LD+S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 820 NRLSG-QIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGN 867
N++S + KLT L L ++ NN I G DE S GN
Sbjct: 183 NKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
+L + N+ + ++ L ++ L+A L I+G + L NL +N N + D
Sbjct: 30 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 83
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
P L N+T+L + ++ NQ++ P ++NLT+L L LF+N PL +L N ++L
Sbjct: 84 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 139
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
E+ + N + + + L + Q L N ++ P L + L+ LD+S N +
Sbjct: 140 EL----SSNTISDISALSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSD 191
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
L T LE L+ TNN + L L +LD S G +D+G +
Sbjct: 192 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 241
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
L L +D++NN N+A ++ + +L L L N S A LT+
Sbjct: 242 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 299
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
+L +L L NN I P +LT+LQ L+ NNK S
Sbjct: 300 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 344
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYE--------------NQAYD--TLGSLKRLKILNL 164
++S+ L+SL +NN + NQ D TL SL L L+L
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 250
Query: 165 GYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
N + L+ LT LT L L N I GL+ L NLE L+ N + +
Sbjct: 251 ANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLE---DI 302
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
I LKNL L L NNI D P ++++T+L+ L N++S S ++NLT++ +L
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358
Query: 285 ALFDNNFEGTFPLSSLANHSKL 306
+ N PL++L ++L
Sbjct: 359 SAGHNQISDLTPLANLTRITQL 380
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
+L + N+ + ++ L ++ L+A L I+G + L NL +N N + D
Sbjct: 25 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
P L N+T+L + ++ NQ++ P ++NLT+L L LF+N PL +L N ++L
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
E+ + N + + + L + Q L N ++ P L + L+ LD+S N +
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLNFGNQVTDLKP--LANLTTLERLDISSNKVSD 186
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
L T LE L+ TNN + L L +LD S G +D+G +
Sbjct: 187 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 236
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
L L +D++NN N+A ++ + +L L L N S A LT+
Sbjct: 237 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 294
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
+L +L L NN I P +LT+LQ L+ NNK S
Sbjct: 295 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 339
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYE--------------NQAYD--TLGSLKRLKILNL 164
++S+ L+SL +NN + NQ D TL SL L L+L
Sbjct: 186 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 245
Query: 165 GYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
N + L+ LT LT L L N I GL+ L NLE L+ N + +
Sbjct: 246 ANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLE---DI 297
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
I LKNL L L NNI D P ++++T+L+ L N++S S ++NLT++ +L
Sbjct: 298 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 353
Query: 285 ALFDNNFEGTFPLSSLANHSKL 306
+ N PL++L ++L
Sbjct: 354 SAGHNQISDLTPLANLTRITQL 375
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 52/347 (14%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
+L + N+ + ++ L ++ L+A L I+G + L NL +N N + D
Sbjct: 25 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
P L N+T+L + ++ NQ++ P ++NLT+L L LF+N PL +L N ++L
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
E+ + N + + + L + Q L + + + P L + L+ LD+S N +
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLSFSSNQVTDLKP-LANLTTLERLDISSNKVSD 187
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
L T LE L+ TNN + L L +LD S G +D+G +
Sbjct: 188 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 237
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
L L +D++NN N+A ++ + +L L L N S A LT+
Sbjct: 238 LTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
+L +L L NN I P +LT+LQ L+ NNK S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYE--------------NQAYD--TLGSLKRLKILNL 164
++S+ L+SL +NN + NQ D TL SL L L+L
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 165 GYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
N + L+ LT LT L L N I GL+ L NLE L+ N + +
Sbjct: 247 ANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLE---DI 298
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
I LKNL L L NNI D P ++++T+L+ L N++S S ++NLT++ +L
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 354
Query: 285 ALFDNNFEGTFPLSSLANHSKL 306
+ N PL++L ++L
Sbjct: 355 SAGHNQISDLTPLANLTRITQL 376
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 760 NLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819
NL + L+LS N ++ S + L + L+ S N +++ P +NL +E LD+S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 820 NRLSG-QIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGN 867
N++S + KLT L L ++ NN I G DE S GN
Sbjct: 183 NKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 52/347 (14%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
+L + N+ + ++ L ++ L+A L I+G + L NL +N N + D
Sbjct: 25 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
P L N+T+L + ++ NQ++ P ++NLT+L L LF+N PL +L N ++L
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
E+ + N + + + L + Q L + + + P L + L+ LD+S N +
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD 187
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
L T LE L+ TNN + L L +LD S G +D+G +
Sbjct: 188 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 237
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
L L +D++NN N+A ++ + +L L L N S A LT+
Sbjct: 238 LTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
+L +L L NN I P +LT+LQ L+ NNK S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYE--------------NQAYD--TLGSLKRLKILNL 164
++S+ L+SL +NN + NQ D TL SL L L+L
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 165 GYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
N + L+ LT LT L L N I GL+ L NLE L+ N + +
Sbjct: 247 ANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLE---DI 298
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
I LKNL L L NNI D P ++++T+L+ L N++S S ++NLT++ +L
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 354
Query: 285 ALFDNNFEGTFPLSSLANHSKL 306
+ N PL++L ++L
Sbjct: 355 SAGHNQISDLTPLANLTRITQL 376
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 760 NLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819
NL + L+LS N ++ S + L + LN S N +++ P +NL +E LD+S
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 820 NRLSG-QIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGN 867
N++S + KLT L L ++ NN I G DE S GN
Sbjct: 183 NKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
+ LTSLT L L N +Q S +KL +L L+LS+N + SL + +L L L
Sbjct: 49 DELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106
Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
L N ++ + +T+LK L + NQL + LTSL+Y+ L DN ++ T P
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPN-CLNNMTRLKVLDISFNQLSG 269
LDL +N + SL + EL +L L L N ++ LPN N +T L L++S NQL
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 270 SFPSIISNLTSLEYLALFDNNFE 292
+ LT L+ LAL N +
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ 113
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISF 264
L +LE L ++ N + EL+NL L+L + +E P N+++ L+VL+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 265 NQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
NQL I LTSL+ + L N ++ + P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 30/185 (16%)
Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD--KHDFLHHLDISSN 411
L++LDLS N L +F Q++ L + SF G + + + + L HLD +
Sbjct: 349 LEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 412 NFTGKLPQDMGIILQKLLYMDMSNNH------------------------FEGNIASSI- 446
N + + L+ L+Y+D+S+ H F+ N I
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 447 AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL 506
E++ L FLDLS+ +LS S SL L ++ N + LT LQ ++L
Sbjct: 467 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 507 ENNKF 511
N +
Sbjct: 526 HTNPW 530
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 785 LQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843
L + VL M+ N E+ +P+ F+ L+ + LDLS +L P L+ L N++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 844 NNLSGLIPD 852
N L +PD
Sbjct: 504 NQLKS-VPD 511
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F E+L+ LD +++ + + E + SL+ L L++ + + + N L+SL
Sbjct: 416 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472
Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNI- 243
L + N+ Q + ++L+NL LDLS + L L +L VLN+ NN
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 531
Query: 244 -EDHLP-NCLNNMTRLKVLDISFNQLSGSFPSIISNL-TSLEYLALFDNNFEGT 294
D P CLN+ L+VLD S N + S + + +SL +L L N+F T
Sbjct: 532 SLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 125/508 (24%), Positives = 180/508 (35%), Gaps = 133/508 (26%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS + + E+ AY SL L L L N + L+SL
Sbjct: 72 FFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127
Query: 185 TLILRENN------------------------IQGSRTKQGLSKLKNLEALDLSSNFING 220
L+ E N IQ + + S L NLE LDLSSN
Sbjct: 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN---- 183
Query: 221 SLESQGICELKNL------------------FVLNLEKNNIEDHLPNCLNNMTRLKVLDI 262
++S +L+ L F+ I H NN L V+
Sbjct: 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 243
Query: 263 SFNQLSG----------------------SFPSIISNLTSLEY-LALFDNNFEGTFPL-S 298
L+G S + NLT E+ LA D +G L +
Sbjct: 244 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303
Query: 299 SLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD----- 353
L N S ++ ++ + ++F F + L L NC P L
Sbjct: 304 CLTNVSSFSLVSVTIE------RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357
Query: 354 ---------------LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD 398
L++LDLS N L +F Q++ L + SF G + + +
Sbjct: 358 SNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415
Query: 399 --KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH------------------- 437
+ L HLD +N + + L+ L+Y+D+S+ H
Sbjct: 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475
Query: 438 -----FEGNIASSI-AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG-R 490
F+ N I E++ L FLDLS+ +LS S SL L +S NNF+
Sbjct: 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLD 534
Query: 491 IFPGYMNLTQLQYL-YLENNKFSGKIEE 517
FP Y L LQ L Y N+ + K +E
Sbjct: 535 TFP-YKCLNSLQVLDYSLNHIMTSKKQE 561
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 785 LQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843
L + VL M+ N E+ +P+ F+ L+ + LDLS +L P L+ L N+S+
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 844 NNLSGL 849
NN L
Sbjct: 528 NNFFSL 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F E+L+ LD +++ + + E + SL+ L L++ + + + N L+SL
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNI- 243
L + N+ Q + ++L+NL LDLS + L L +L VLN+ NN
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 244 -EDHLP-NCLNNMTRLKVLDISFNQLSGSFPSIISNL-TSLEYLALFDNNFEGT 294
D P CLN+ L+VLD S N + S + + +SL +L L N+F T
Sbjct: 508 SLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD--KHDFLHHLDISSN 411
L++LDLS N L +F Q++ L + SF G + + + + L HLD +
Sbjct: 349 LEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 412 NFTGKLPQDMGIILQKLLYMDMSNNH------------------------FEGNIASSI- 446
N + + L+ L+Y+D+S+ H F+ N I
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 447 AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG-RIFPGYMNLTQLQYL- 504
E++ L FLDLS+ +LS S SL L +S NNF+ FP Y L LQ L
Sbjct: 467 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLD 524
Query: 505 YLENNKFSGKIEE 517
Y N+ + K +E
Sbjct: 525 YSLNHIMTSKKQE 537
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 785 LQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843
L + VL M+ N E+ +P+ F+ L+ + LDLS +L P L+ L N+S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 844 NNLSGL 849
NN L
Sbjct: 504 NNFFSL 509
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 79 CNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSN 138
C+ +RCN+ + + ++ +E N + SL +F +L L LS+
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSS 61
Query: 139 N--SFEGVYENQAYDTLGSLKRLKILNLGYN--YFDDSIFLYLNALTSLTTLILRENNIQ 194
N SF+G + T LK L+L +N S FL L L L + +N++
Sbjct: 62 NGLSFKGCCSQSDFGT----TSLKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLK 114
Query: 195 GSRTKQGLSKLKNLEALDLSSNFINGSLESQGICE-LKNLFVLNLEKNNI-EDHLPNCLN 252
L+NL LD+S + GI L +L VL + N+ E+ LP+
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 253 NMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEG--TFPLSSL 300
+ L LD+S QL P+ ++L+SL+ L + NNF TFP L
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH------------------------F 438
L HLD +N + + L+ L+Y+D+S+ H F
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 439 EGNIASSI-AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG-RIFPGYM 496
+ N I E++ L FLDLS+ +LS S SL L +S NNF+ FP Y
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YK 220
Query: 497 NLTQLQYL-YLENNKFSGKIEE 517
L LQ L Y N+ + K +E
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQE 242
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 785 LQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843
L + VL M+ N E+ +P+ F+ L+ + LDLS +L P L+ L N+S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 844 NNLSGL 849
NN L
Sbjct: 209 NNFFSL 214
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 150/352 (42%), Gaps = 84/352 (23%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
FH F LQ LDL+ + ++ L L LK L L N F++ + + SLT
Sbjct: 274 FHCFSGLQELDLT-----ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328
Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
L ++ N + L L+NL LDLS + I E+ C L+
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDI----ETSDCCNLQ------------- 371
Query: 245 DHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
L N++ L+ L++S+N E L+L F+
Sbjct: 372 ------LRNLSHLQSLNLSYN----------------EPLSLKTEAFKEC---------P 400
Query: 305 KLEVLLLS-TRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD----LKYLDL 359
+LE+L L+ TR + Q+ F LKVL L + L++ L FD L++L+L
Sbjct: 401 QLELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQL---FDGLPALQHLNL 456
Query: 360 SHNDLDGAFP------TWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF-----LHHLDI 408
N FP T +LQ +LE+L+L+ + D+H F ++H+D+
Sbjct: 457 QGNH----FPKGNIQKTNSLQTLGRLEILVLSFCDLSS-----IDQHAFTSLKMMNHVDL 507
Query: 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKN 460
S N T + + + K +Y+++++NH + S + + + R ++L +N
Sbjct: 508 SHNRLTSSSIEALSHL--KGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 49/230 (21%)
Query: 71 DGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEE 130
D +SDCCN L L + S S N +Y + LSL F +
Sbjct: 360 DDIETSDCCN---------------LQLRNLSHL--QSLNLSYNE-PLSLKTEAFKECPQ 401
Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
L+ LDL+ F + A +L LK+LNL ++ D S + L +L L L+
Sbjct: 402 LELLDLA---FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 191 N-----NIQGSRTKQGLSK---------------------LKNLEALDLSSNFINGSLES 224
N NIQ + + Q L + LK + +DLS N + S
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SI 517
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
+ + LK ++ LNL N+I LP+ L +++ + +++ N L + +I
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 142/329 (43%), Gaps = 38/329 (11%)
Query: 542 WMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHL 599
W+G ++ +S FEG + V+ +N ++ F++S N F S ++ L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF-------SGLQEL 283
Query: 600 YLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXXEGQI- 658
L LS +P L S L L L N F + QI+ + ++
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLE 340
Query: 659 --PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI 716
+ L L +DLSH+ S C N+ L ++ +L +L++ E L + +
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETS--DC-CNLQLRNLSHLQSL---NLSYNEPLSLKTE 394
Query: 717 GIYYSSMLDMGQLS------SEERGPFTFDYLVEV-----EFVTKNRYEVYNGSNLDYMV 765
L++ L+ + + PF +L++V + + ++++G L +
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--LPALQ 452
Query: 766 GLDLSCNKL-TGEI--PSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822
L+L N G I + + L + +L +S LS +F++LKM+ +DLSHNRL
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Query: 823 SGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
+ L+ L + N++ N++S ++P
Sbjct: 513 TSSSIEALSHLKGIY-LNLASNHISIILP 540
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 141 FEGVYENQAYDT-LGSLKRLKILN--LGYNYFDDSI--FLYLNALTSLTTLILRENNIQG 195
+G+ A++T + +++ ++ LN +G D+ I L LT +T L L N ++
Sbjct: 46 LDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKN 105
Query: 196 SRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMT 255
GL +K LDL+S I + + L NL VL L+ N I + P L +T
Sbjct: 106 VSAIAGLQSIK---TLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNISP--LAGLT 157
Query: 256 RLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLAN 302
L+ L I NQ++ P ++NL+ L L DN PL+SL N
Sbjct: 158 NLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLASLPN 202
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
YLN L L L++N I + L+K+ LE LS N + I L+++
Sbjct: 67 YLNNLIGLE---LKDNQITDLTPLKNLTKITELE---LSGNPLK---NVSAIAGLQSIKT 117
Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
L+L I D P L ++ L+VL + NQ++ P ++ LT+L+YL++ +N
Sbjct: 118 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLT 173
Query: 296 PLSSLANHSKLEVL 309
P LAN SKL L
Sbjct: 174 P---LANLSKLTTL 184
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 32/236 (13%)
Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
N LNL++N+I+ + ++ L++L +S N + + L SL L LFDN
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTE---NFLPTFQ------------------ 330
T P + SKL L L RNN ++ N +P+ +
Sbjct: 96 T-TVPTQAFEYLSKLRELWL--RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 331 -----LKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLT 385
L+ L L C+L I P L L+ L+LS N LD P + Q T L L L
Sbjct: 153 EGLVNLRYLNLGMCNLKDI-PNLTALVRLEELELSGNRLDLIRPG-SFQGLTSLRKLWLM 210
Query: 386 NNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGN 441
+ + D L L++S NN LP D+ L +L + +++N + N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNPWHCN 265
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 32/236 (13%)
Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
N LNL++N+I+ + ++ L++L +S N + + L SL L LFDN
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTE---NFLPTFQ------------------ 330
T P + SKL L L RNN ++ N +P+ +
Sbjct: 96 -TTVPTQAFEYLSKLRELWL--RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 331 -----LKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLT 385
L+ L L C+L I P L L+ L+LS N LD P + Q T L L L
Sbjct: 153 EGLVNLRYLNLGMCNLKDI-PNLTALVRLEELELSGNRLDLIRPG-SFQGLTSLRKLWLM 210
Query: 386 NNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGN 441
+ + D L L++S NN LP D+ L +L + +++N + N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNPWHCN 265
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
+ LT+L L+L EN +Q S KL NL L L N + SL +L NL L+
Sbjct: 106 DKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLD 163
Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
L+ N ++ + +T+LK L ++ NQL + LTSL ++ L +N ++
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWD 218
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
Y Y + + SL +F L LDL NN + + E +D L LK+L + +
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQLKQLSLNDNQLKSVP 197
Query: 171 DSIFLYLNALTSLTTLILREN 191
D +F + LTSLT + L N
Sbjct: 198 DGVF---DRLTSLTHIWLLNN 215
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 32/224 (14%)
Query: 98 LNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSL-DLSNNSFEGVYENQAYDT--LG 154
++D S +K Y SLN+ H +L L + + ++ V E++ D +
Sbjct: 122 ISDISPLANLTKXY-------SLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIA 174
Query: 155 SLKRLKILNLGYNYFDDSIFL-----------YLNALTSLTTLI--LRENNIQ-GSRTKQ 200
+L L L+L YN +D L Y+N +T +T + R N+++ G+
Sbjct: 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKIT 234
Query: 201 GLSKLKNLEAL---DLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRL 257
LS L NL L ++ +N I+ + + +L L LN+ N I D + LNN+++L
Sbjct: 235 DLSPLANLSQLTWLEIGTNQIS---DINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQL 289
Query: 258 KVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLA 301
L ++ NQL +I LT+L L L N+ PL+SL+
Sbjct: 290 NSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLS 333
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 133/325 (40%), Gaps = 65/325 (20%)
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
QGI L NL LNL N I D P L+N+ +L L I N+++ S + NLT+L L
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115
Query: 285 ALFDNNFEGTFPLSSL---------ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLR 335
L ++N PL++L ANH+ ++ LS + N+L + KV
Sbjct: 116 YLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGL------NYLTVTESKVK- 168
Query: 336 LPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQL 395
+V P + + DL L L++N ++ P +L T L N T
Sbjct: 169 ------DVTP--IANLTDLYSLSLNYNQIEDISPLASL---TSLHYFTAYVNQITD--IT 215
Query: 396 PDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFL 455
P L+ L I +N T P L +L ++++ N +++ ++ +L+ L
Sbjct: 216 PVANXTRLNSLKIGNNKITDLSPLAN---LSQLTWLEIGTNQISD--INAVKDLTKLKXL 270
Query: 456 DLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI 515
++ N S S+L NL+QL L+L NN+ +
Sbjct: 271 NVGSNQISD----------ISVL-----------------NNLSQLNSLFLNNNQLGNED 303
Query: 516 EEGLLKSKKLVELRMSSNMLSGHIP 540
E + L L +S N ++ P
Sbjct: 304 XEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 24/123 (19%)
Query: 200 QGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV-------------------LNLEK 240
QG+ L NLE L+L+ N I + +L NL++ L L +
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119
Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQ-LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSS 299
+NI D P L N+T+ L++ N LS P +SN T L YL + ++ + P+++
Sbjct: 120 DNISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTPIAN 175
Query: 300 LAN 302
L +
Sbjct: 176 LTD 178
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 141 FEGVYENQAYDT-LGSLKRLKILN--LGYNYFDDSI--FLYLNALTSLTTLILRENNIQG 195
+G+ A+ T + +++ ++ LN +G D+ I L LT +T L L N ++
Sbjct: 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN 99
Query: 196 SRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMT 255
GL +K LDL+S I + + L NL VL L+ N I + P L +T
Sbjct: 100 VSAIAGLQSIK---TLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNISP--LAGLT 151
Query: 256 RLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLAN 302
L+ L I Q+S P ++NL+ L L DN PL+SL N
Sbjct: 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPN 196
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 254 MTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLST 313
+T+L L++ +NQL + +LT L L L +N + PL + ++L+ L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG- 115
Query: 314 RNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWA 372
N + + + F +LK LRL L IP + +L+ L LS N L + P A
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 373 LQNNTKLEVLLLTNNSF 389
KL+ + L N F
Sbjct: 175 FDRLGKLQTITLFGNQF 191
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLEN 508
+ +L +L+L N LSA + L LGL++N + +LTQL LYL
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
N+ + KL ELR+++N L L+ L+ L +S N + ++P
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 569 NH-RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK 603
+ +LQ ++ N F+ S E LYL +
Sbjct: 176 DRLGKLQTITLFGN--------QFDCSRCEILYLSQ 203
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 152 TLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL 211
T L +L LNL YN + LT L TL L N + S L L+ L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSF 271
L N + SL S L L L L N ++ + +T L+ L +S NQL
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 272 PSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
L L+ + LF N F+ S+ E+L LS
Sbjct: 172 HGAFDRLGKLQTITLFGNQFD----------CSRCEILYLS 202
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 254 MTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLST 313
+T+L L++ +NQL + +LT L L L +N + PL + ++L+ L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG- 115
Query: 314 RNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWA 372
N + + + F +LK LRL L IP + +L+ L LS N L + P A
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 373 LQNNTKLEVLLLTNNSF 389
KL+ + L N F
Sbjct: 175 FDRLGKLQTITLFGNQF 191
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLEN 508
+ +L +L+L N LSA + L LGL++N + +LTQL LYL
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
N+ + KL ELR+++N L L+ L+ L +S N + ++P
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 569 NH-RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK 603
+ +LQ ++ N F+ S E LYL +
Sbjct: 176 DRLGKLQTITLFGN--------QFDCSRCETLYLSQ 203
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 2/141 (1%)
Query: 152 TLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL 211
T L +L LNL YN + LT L TL L N + S L L+ L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSF 271
L N + SL S L L L L N ++ + +T L+ L +S NQL
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 272 PSIISNLTSLEYLALFDNNFE 292
L L+ + LF N F+
Sbjct: 172 HGAFDRLGKLQTITLFGNQFD 192
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
+S T L L N +Q S KL L L LS N I SL +L L +L L +
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85
Query: 241 NNIEDHLPN-CLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
N ++ LPN + +T+LK L + NQL I LTSL+ + L N ++ + P
Sbjct: 86 NKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 91/405 (22%)
Query: 153 LGSLKRLKILNLGYNYFDD-SIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLK----- 206
+G L LK LN+ +N+ + Y + LT+L + L N IQ + T L L+
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQV 182
Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKN-NIEDHLPNCLNNMTRLKVLDISFN 265
NL +LD+S N I+ ++ Q +K L L L N N + + CL N+ L V +
Sbjct: 183 NL-SLDMSLNPIDF-IQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 266 QLSGSF------PSIISNLTSL---EYLALFDNNF-EGTFPLSSLANHSKLEVLLLSTRN 315
+ PSI+ L + E+ + N+F + LAN S + + +S +
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK- 298
Query: 316 NMLQVQTENFLPTFQLKVLRLPNCSLNVIP----PFLLHQFDLKYLDLSHNDLDGAFPTW 371
E+ F+ + L + C L P PFL K L L+ N +F
Sbjct: 299 -----YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL------KSLTLTMNKGSISFKKV 347
Query: 372 ALQNNTKLEVLLLTNN--SFTGNLQLPDDKHDFLHHLDIS-------SNNFTG------- 415
AL + L L L+ N SF+G D + L HLD+S S NF G
Sbjct: 348 ALPS---LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404
Query: 416 --------KLPQDMGII-LQKLLYMD------------------------MSNNHFEGNI 442
++ + + L+KLLY+D M+ N F+ N
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464
Query: 443 ASSI-AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN 486
S++ A L FLDLSK ++S + + L L +S NN
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNN 508
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 35/144 (24%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS E + E++A+ + L L+
Sbjct: 52 FSNFSELQWLDLSRCEIETI-EDKAW---------------------------HGLHHLS 83
Query: 185 TLILRENNIQ--GSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNN 242
LIL N IQ + GL+ L+NL A++ SLES I +L L LN+ N
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKL----ASLESFPIGQLITLKKLNVAHNF 139
Query: 243 IED-HLPNCLNNMTRLKVLDISFN 265
I LP +N+T L +D+S+N
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS--- 837
IG+L + LN++HNF+ S +P FSNL + +DLS+N + + +L FL
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRENP 180
Query: 838 ----NFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC 879
+ ++S N + + Q E + RGN + I K+C
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN--SSNIMKTC 224
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 164/405 (40%), Gaps = 91/405 (22%)
Query: 153 LGSLKRLKILNLGYNYFDD-SIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLK----- 206
+G L LK LN+ +N+ + Y + LT+L + L N IQ + T L L+
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQV 177
Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKN-NIEDHLPNCLNNMTRLKVLDISFN 265
NL +LD+S N I+ ++ Q +K L L L N N + + CL N+ L V +
Sbjct: 178 NL-SLDMSLNPIDF-IQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 234
Query: 266 QLSGSF------PSIISNLTSL---EYLALFDNNF-EGTFPLSSLANHSKLEVLLLSTRN 315
+ PSI+ L + E+ + N+F + LAN S + + +S +
Sbjct: 235 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK- 293
Query: 316 NMLQVQTENFLPTFQLKVLRLPNCSLNVIP----PFLLHQFDLKYLDLSHNDLDGAFPTW 371
E+ F+ + L + C L P PFL K L L+ N +F
Sbjct: 294 -----YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL------KSLTLTMNKGSISFKKV 342
Query: 372 ALQNNTKLEVLLLTNN--SFTGNLQLPDDKHDFLHHLDIS-------SNNFTG------- 415
AL + L L L+ N SF+G D + L HLD+S S NF G
Sbjct: 343 ALPS---LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 399
Query: 416 --------KLPQDMGII-LQKLLYMD------------------------MSNNHFEGNI 442
++ + + L+KLLY+D M+ N F+ N
Sbjct: 400 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 459
Query: 443 ASSI-AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN 486
S++ A L FLDLSK ++S + + L L +S NN
Sbjct: 460 LSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNN 503
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 35/144 (24%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS E + E++A+ + L L+
Sbjct: 47 FSNFSELQWLDLSRCEIETI-EDKAW---------------------------HGLHHLS 78
Query: 185 TLILRENNIQ--GSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNN 242
LIL N IQ + GL+ L+NL A++ SLES I +L L LN+ N
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKL----ASLESFPIGQLITLKKLNVAHNF 134
Query: 243 IED-HLPNCLNNMTRLKVLDISFN 265
I LP +N+T L +D+S+N
Sbjct: 135 IHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS--- 837
IG+L + LN++HNF+ S +P FSNL + +DLS+N + + +L FL
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRENP 175
Query: 838 ----NFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC 879
+ ++S N + + Q E + RGN + I K+C
Sbjct: 176 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN--SSNIMKTC 219
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 40/203 (19%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS + + E+ AY SL L L L N + L+SL
Sbjct: 49 FFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGLSSLQ 104
Query: 185 TLILRENN------------------------IQGSRTKQGLSKLKNLEALDLSSNFING 220
L+ E N IQ + + S L NLE LDLSSN I
Sbjct: 105 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-- 162
Query: 221 SLESQGICELKNLFVLNLEKNNIEDHL-------PNCLNNMTRLKVLDISFNQLSGSFPS 273
+S +L+ L + L +++ L P + RLK L + NQL
Sbjct: 163 --QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 219
Query: 274 IISNLTSLEYLALFDNNFEGTFP 296
I LTSL+ + L N ++ + P
Sbjct: 220 IFDRLTSLQKIWLHTNPWDCSCP 242
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 40/203 (19%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS + + E+ AY SL L L L N + L+SL
Sbjct: 50 FFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGLSSLQ 105
Query: 185 TLILRENN------------------------IQGSRTKQGLSKLKNLEALDLSSNFING 220
L+ E N IQ + + S L NLE LDLSSN I
Sbjct: 106 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-- 163
Query: 221 SLESQGICELKNLFVLNLEKNNIEDHL-------PNCLNNMTRLKVLDISFNQLSGSFPS 273
+S +L+ L + L +++ L P + RLK L + NQL
Sbjct: 164 --QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 220
Query: 274 IISNLTSLEYLALFDNNFEGTFP 296
I LTSL+ + L N ++ + P
Sbjct: 221 IFDRLTSLQKIWLHTNPWDCSCP 243
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 40/203 (19%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS + + E+ AY SL L L L N + L+SL
Sbjct: 49 FFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGLSSLQ 104
Query: 185 TLILRENN------------------------IQGSRTKQGLSKLKNLEALDLSSNFING 220
L+ E N IQ + + S L NLE LDLSSN I
Sbjct: 105 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-- 162
Query: 221 SLESQGICELKNLFVLNLEKNNIEDHL-------PNCLNNMTRLKVLDISFNQLSGSFPS 273
+S +L+ L + L +++ L P + RLK L + NQL
Sbjct: 163 --QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 219
Query: 274 IISNLTSLEYLALFDNNFEGTFP 296
I LTSL+ + L N ++ + P
Sbjct: 220 IFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 39/208 (18%)
Query: 126 HPFE--ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKIL---------NLGYNYFDD--- 171
+PF+ + +LDLS N F+ + +D + K ++ + G+ F D
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 172 -------------------SIFLYLNAL----TSLTTLILRENNIQGSRTKQGLSKLKNL 208
IF L ++ T L L L +N I L +L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325
Query: 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLS 268
L+LS NF+ GS++S+ L L VL+L N+I + LK L + NQL
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 269 GSFPSIISNLTSLEYLALFDNNFEGTFP 296
I LTSL+ + L N ++ + P
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 145/377 (38%), Gaps = 70/377 (18%)
Query: 117 VLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLY 176
+ LN + F ++LQ L + + V N + L SL IL L YN F
Sbjct: 42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI---ILKLDYNQFLQLETGA 98
Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSK-LKNLEALDLSSNFINGSLESQGICELKNLFV 235
N L +L L L + N+ G+ K L +LE L L N I + ++ V
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 236 LNLEKNNI-----EDHLPNCLNNMTRLKVLDISFNQLSGSF------PSIISNLTSLEYL 284
L+L N + ED L + T L++ I+ ++ + + N TS+ L
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTL 217
Query: 285 ALFDNNFEGTFP---LSSLANHSKLEVLLLSTRNNMLQV-------QTENFLPTFQ-LKV 333
L N F+ + ++A +K++ L+LS NM +NF TF+ L+
Sbjct: 218 DLSGNGFKESMAKRFFDAIAG-TKIQSLILSNSYNMGSSFGHTNFKDPDNF--TFKGLEA 274
Query: 334 LRLPNCSLNVIPPFLL------HQFDLKYLDLSHNDL----DGAFPTWALQNNTKLEVLL 383
+ C L+ F L H DL+ L L+ N++ D AF W L + KL +
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNL-- 330
Query: 384 LTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443
S NF G + M L KL +D+S NH
Sbjct: 331 --------------------------SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364
Query: 444 SSIAEMKELRFLDLSKN 460
S + L+ L L N
Sbjct: 365 QSFLGLPNLKELALDTN 381
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 430 YMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG 489
Y+D+S N +S + +++L+FL + + L + +N F G
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG----------------LVIRNNTFRG 77
Query: 490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYL 549
+ L Q+L LE F+G L+ L + + +LSG+ + L+ L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLAN---LEVLTLTQCNLDGAVLSGN---FFKPLTSL 131
Query: 550 EVLLMSKNFFEGNIPVQL-LNHRRLQLF--------SVSENYLSGFMTTSFNISSVEHLY 600
E+L++ N + P LN RR + S+ E L F F + + +
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 601 LQKNS---LSGPIPIALFRSSNLLTLDLRDNGF 630
LQ + L F+++++ TLDL NGF
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 40/203 (19%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS + + E+ AY SL L L L N + L+SL
Sbjct: 48 FFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 185 TLILRENN------------------------IQGSRTKQGLSKLKNLEALDLSSNFING 220
L+ E N IQ + + S L NLE LDLSSN I
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-- 161
Query: 221 SLESQGICELKNLFVLNLEKNNIEDHL-------PNCLNNMTRLKVLDISFNQLSGSFPS 273
+S +L+ L + L +++ L P + RLK L + NQL
Sbjct: 162 --QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 218
Query: 274 IISNLTSLEYLALFDNNFEGTFP 296
I LTSL+ + L N ++ + P
Sbjct: 219 IFDRLTSLQKIWLHTNPWDCSCP 241
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 782 IGELQEIPVLNMSHNFL-SESIPESFSNLKMIESLDLSHNRL 822
IG L+ + LN++HN + S +PE FSNL +E LDLS N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 40/203 (19%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
F F ELQ LDLS + + E+ AY SL L L L N + L+SL
Sbjct: 50 FFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGLSSLQ 105
Query: 185 TLILRENN------------------------IQGSRTKQGLSKLKNLEALDLSSNFING 220
L+ E N IQ + + S L NLE LDLSSN I
Sbjct: 106 KLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-- 163
Query: 221 SLESQGICELKNLFVLNLEKNNIEDHL-------PNCLNNMTRLKVLDISFNQLSGSFPS 273
+S +L+ L + L +++ L P + RLK L + NQL
Sbjct: 164 --QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 220
Query: 274 IISNLTSLEYLALFDNNFEGTFP 296
I LTSL+ + L N ++ + P
Sbjct: 221 IFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 37.0 bits (84), Expect = 0.056, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 202 LSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLD 261
LS LK + L LS+N I + + ++NL +L+L +N I+ + N L+ L
Sbjct: 44 LSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW 99
Query: 262 ISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQ 321
IS+NQ++ S I L +L L + +N + LA KLE LLL+ +
Sbjct: 100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
Query: 322 TENFLPTFQLKVL-RLPN 338
N ++++V+ RLPN
Sbjct: 158 ENNATSEYRIEVVKRLPN 175
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSD 484
L+ ++ +S N+ E SS++ M+ LR L L +N + + LW+
Sbjct: 47 LKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS--- 101
Query: 485 NNFYGRI--FPGYMNLTQLQYLYLENNKFS--GKIEEGLLKSKKLVELRMSSNML 535
Y +I G L L+ LY+ NNK + G+I++ L KL +L ++ N L
Sbjct: 102 ---YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPL 152
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 202 LSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLD 261
LS LK + L LS+N I + + ++NL +L+L +N I+ + N L+ L
Sbjct: 45 LSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW 100
Query: 262 ISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQ 321
IS+NQ++ S I L +L L + +N + LA KLE LLL+ +
Sbjct: 101 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 158
Query: 322 TENFLPTFQLKVL-RLPN 338
N ++++V+ RLPN
Sbjct: 159 ENNATSEYRIEVVKRLPN 176
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSD 484
L+ ++ +S N+ E SS++ M+ LR L L +N + + LW+
Sbjct: 48 LKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS--- 102
Query: 485 NNFYGRI--FPGYMNLTQLQYLYLENNKFS--GKIEEGLLKSKKLVELRMSSNML 535
Y +I G L L+ LY+ NNK + G+I++ L KL +L ++ N L
Sbjct: 103 ---YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPL 153
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 208 LEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267
+++LDLS+N I + + + NL L L N I + +++ L+ LD+S+N L
Sbjct: 54 VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 268 SGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF 325
S S L+SL +L L N ++ S ++ +KL++L + + ++Q ++F
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 5/171 (2%)
Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
LQ+L L++N + E+ ++ +LGSL+ L +L YNY + + L+SLT L L
Sbjct: 78 LQALVLTSNGINTIEED-SFSSLGSLEHL---DLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
N + S L L+ L + + ++ + L L L ++ ++++ + P
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193
Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLA 301
L ++ + L + Q + +S+E L L D + + TF S L+
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD-TFHFSELS 243
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR 821
+ + LDLS N++T S++ + L ++ N ++ +SFS+L +E LDLS+N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 822 LS 823
LS
Sbjct: 112 LS 113
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 113/274 (41%), Gaps = 40/274 (14%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILN--LGYNYFDDSIFLYLNALTS 182
F + L+ L++ +N G+ N + L +LK L + N + F+ L A +
Sbjct: 335 FQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSP 392
Query: 183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF-------- 234
L L L +N I + S L +LE LDL N I L Q L+N+F
Sbjct: 393 LHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 451
Query: 235 VLNLEKNNIE------------------DHLPNCLNNMTRLKVLDISFNQLSGSFPSIIS 276
L L +N+ D P+ + L +LD+S N ++ ++
Sbjct: 452 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 511
Query: 277 NLTSLEYLALFDNNFEGTF-------PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF 329
L LE L L NN + P+ L S L +L L + N ++ E F F
Sbjct: 512 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLF 570
Query: 330 QLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHN 362
+LK++ L +LN +P + +Q LK L+L N
Sbjct: 571 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
D S KLT ++P ++ I VLN++HN L +F+ + SLD+ N +S P
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
Query: 828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINK 877
+L L N+ +N LS L DK TF + LHL +I K
Sbjct: 77 ELCQKLPMLKVLNLQHNELSQL-SDK----TFAFCTNLTELHLMSNSIQK 121
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 172 SIFLYLNALTSLTTLILRENNIQGSRTKQGLSKL------------------------KN 207
SI YL + S TTLI +N+ + T+Q L +L +N
Sbjct: 90 SILDYL-GIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRN 148
Query: 208 LEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267
L L+L +N + S +L+NL + N + M +LK L+++ NQL
Sbjct: 149 LSHLELRANI--EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL 206
Query: 268 SGSFPSIISNLTSLEYLALFDNNFEGTFP 296
I LTSL+ + L N ++ + P
Sbjct: 207 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 113/274 (41%), Gaps = 40/274 (14%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILN--LGYNYFDDSIFLYLNALTS 182
F + L+ L++ +N G+ N + L +LK L + N + F+ L A +
Sbjct: 330 FQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSP 387
Query: 183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF-------- 234
L L L +N I + S L +LE LDL N I L Q L+N+F
Sbjct: 388 LHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 446
Query: 235 VLNLEKNNIE------------------DHLPNCLNNMTRLKVLDISFNQLSGSFPSIIS 276
L L +N+ D P+ + L +LD+S N ++ ++
Sbjct: 447 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 506
Query: 277 NLTSLEYLALFDNNFEGTF-------PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF 329
L LE L L NN + P+ L S L +L L + N ++ E F F
Sbjct: 507 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLF 565
Query: 330 QLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHN 362
+LK++ L +LN +P + +Q LK L+L N
Sbjct: 566 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
D S KLT ++P ++ I VLN++HN L +F+ + SLD+ N +S P
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINK 877
+L L N+ +N LS L DK TF + LHL +I K
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQL-SDK----TFAFCTNLTELHLMSNSIQK 116
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 208 LEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267
+++LDLS+N I + + + NL L L N I + +++ L+ LD+S+N L
Sbjct: 28 VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 268 SGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF 325
S S L+SL +L L N ++ S ++ +KL++L + + ++Q ++F
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 144
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 5/171 (2%)
Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
LQ+L L++N + E+ ++ +LGSL+ L +L YNY + + L+SLT L L
Sbjct: 52 LQALVLTSNGINTIEED-SFSSLGSLEHL---DLSYNYLSNLSSSWFKPLSSLTFLNLLG 107
Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
N + S L L+ L + + ++ + L L L ++ ++++ + P
Sbjct: 108 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 167
Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLA 301
L ++ + L + Q + +S+E L L D + + TF S L+
Sbjct: 168 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD-TFHFSELS 217
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 38/157 (24%)
Query: 178 NALTSLTTLILRENNIQG-SRTKQGLSKLKNLEALDLSSNFINGSLES-QGICELKNLFV 235
+A SL TLILR+N++ +T + L LKNL +D+S N + E+ Q ++K L +
Sbjct: 358 DAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNL 417
Query: 236 LNLEKNNIEDHLPNCL---------------------------NNMTRLK---------V 259
+ +++ +P L N + L V
Sbjct: 418 SSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDASLLPMLLV 477
Query: 260 LDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
L IS NQL I LTSL+ + L N ++ + P
Sbjct: 478 LKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 766 GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823
LDLS N++T S++ + L ++ N ++ +SFS+L +E LDLS+N LS
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 113/274 (41%), Gaps = 40/274 (14%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILN--LGYNYFDDSIFLYLNALTS 182
F + L+ L++ +N G+ N + L +LK L + N + F+ L A +
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSP 382
Query: 183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF-------- 234
L L L +N I + S L +LE LDL N I L Q L+N+F
Sbjct: 383 LHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
Query: 235 VLNLEKNNIE------------------DHLPNCLNNMTRLKVLDISFNQLSGSFPSIIS 276
L L +N+ D P+ + L +LD+S N ++ ++
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 277 NLTSLEYLALFDNNFEGTF-------PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF 329
L LE L L NN + P+ L S L +L L + N ++ E F F
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLF 560
Query: 330 QLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHN 362
+LK++ L +LN +P + +Q LK L+L N
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
D S KLT ++P ++ I VLN++HN L +F+ + SLD+ N +S P
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINK 877
+L L N+ +N LS L DK TF + LHL +I K
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQL-SDK----TFAFCTNLTELHLMSNSIQK 111
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 51/187 (27%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLN------ALTSLTTLILRENNIQG-SRTKQGLSKLKNL 208
LK L+ L+L N + YL A SL TL+L +N+++ +T + L LKNL
Sbjct: 333 LKSLEFLDLSENLMVEE---YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389
Query: 209 EALDLSSN----------------FINGSLESQGI-----CELKNLFVLNLEKNNIED-- 245
+LD+S N F+N L S GI C + L VL++ NN++
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLN--LSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS 447
Query: 246 ----HLPNCLNNMTRLK------------VLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
L + +LK V+ IS NQL I LTSL+ + L N
Sbjct: 448 LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 290 NFEGTFP 296
++ + P
Sbjct: 508 PWDCSCP 514
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 198 TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRL 257
T GL++ ++ LDLS F+ SL S+ LK+L VLNL N I + L
Sbjct: 259 TFAGLAR-SSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
Query: 258 KVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNM 317
+VL++S+N L + S L + Y+ L N+ + KL+ L L R+N
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDL--RDNA 373
Query: 318 LQVQTENFLPTFQL------KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTW 371
L T +F+P+ K++ LP +L + LS N L+ +
Sbjct: 374 L--TTIHFIPSIPDIFLSGNKLVTLPKINLTA-----------NLIHLSENRLENLDILY 420
Query: 372 ALQNNTKLEVLLLTNNSFT 390
L L++L+L N F+
Sbjct: 421 FLLRVPHLQILILNQNRFS 439
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 785 LQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823
L + VL ++HN+L+ P FS+L + L L+ NRL+
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 51/187 (27%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLN------ALTSLTTLILRENNIQG-SRTKQGLSKLKNL 208
LK L+ L+L N + YL A SL TL+L +N+++ +T + L LKNL
Sbjct: 359 LKSLEFLDLSENLMVEE---YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 415
Query: 209 EALDLSSN----------------FINGSLESQGI-----CELKNLFVLNLEKNNIED-- 245
+LD+S N F+N L S GI C + L VL++ NN++
Sbjct: 416 TSLDISRNTFHPMPDSCQWPEKMRFLN--LSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS 473
Query: 246 ----HLPNCLNNMTRLK------------VLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
L + +LK V+ I+ NQL I LTSL+ + L N
Sbjct: 474 LFLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
Query: 290 NFEGTFP 296
++ + P
Sbjct: 534 PWDCSCP 540
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 778 IPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK 829
+P E+ + + ++++S+N +S +SFSN+ + +L LS+NRL IPP+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPR 96
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 200 QGLSKLKNLEALDLSSNFING---SLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTR 256
+GL L D++ +++G +L + + K+L +++L N I +NMT+
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 257 LKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF----EGTF 295
L L +S+N+L P L SL L+L N+ EG F
Sbjct: 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNN-----SFTGNLQLPDDKHDFLHHLDISSN 411
LDLSHN+L W T L LLL++N S + +P+ L +LD+SSN
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-----LRYLDLSSN 98
Query: 412 NFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
+ L + + LQ L + + NNH ++ +M +L+ L LS+N S
Sbjct: 99 HL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239
LT+L +L+L N++ + + + NL LDLSSN ++ +L+ +L+ L VL L
Sbjct: 63 LTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120
Query: 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFD--NNFEGTFPL 297
N+I N +M +L+ L +S NQ+S +I + L L L D +N PL
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180
Query: 298 SSL 300
+ L
Sbjct: 181 TDL 183
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 769 LSC--NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL-KMIESLDLSHNRLSGQ 825
L C N+L G++P+ E++ + LN+++N ++E IP +F + +E+L +HN+L
Sbjct: 335 LECLYNQLEGKLPAFGSEIK-LASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-Y 391
Query: 826 IPP--KLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVE 883
IP ++ S + SYN + + D F D + ++G + +IN S N +
Sbjct: 392 IPNIFDAKSVSVXSAIDFSYNEIGSV--DGKNFDPLDPTPFKG---INVSSINLSNNQIS 446
Query: 884 EIP 886
+ P
Sbjct: 447 KFP 449
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 784 ELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843
E ++ VL+++H L+ + L ++ LDLSHNRL +PP L L L S
Sbjct: 439 EYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 844 NNLSGL 849
N L +
Sbjct: 496 NALENV 501
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 784 ELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843
E ++ VL+++H L+ + L ++ LDLSHNRL +PP L L L S
Sbjct: 439 EYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 844 NNLSGL 849
N L +
Sbjct: 496 NALENV 501
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
LP + N++ L+VLD+S N+L+ S P+ + + L+Y FDN
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 145 YENQAYDTLGSLKRLKILNLGYNYF--DDSIFLYLNALTSLTTLILRENNIQGSRTKQGL 202
Y++Q + L L L+I N+ N F D LYLN SLT L N
Sbjct: 221 YDDQLWHAL-DLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKN---------- 268
Query: 203 SKLKNLEALDLSSNFINGSLESQGIC-ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLD 261
L NL LDLS N + G C +LK + +N+ LP N+ L+ L
Sbjct: 269 --LSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF----DNMVTTLPWEFGNLCNLQFLG 322
Query: 262 ISFNQLSGSFPSIIS--NLTSLEYLALFDNNFEGTFP 296
+ N L F I++ ++T L + L DN E P
Sbjct: 323 VEGNPLEKQFLKILTEKSVTGLIFY-LRDNRPEIPLP 358
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294
VL L N I P + +T+L LD+ NQL+ + LT L L+L DN + +
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-S 100
Query: 295 FPLSSLANHSKL 306
P + N L
Sbjct: 101 IPRGAFDNLKSL 112
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 185
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 186 NHIS---DLRALAGLKNLDVLEL 205
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 121 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 171
Query: 541 HWMGNLSYLEVLLMSKN 557
+ L+ L+ L +SKN
Sbjct: 172 --LAGLTKLQNLYLSKN 186
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 153 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 207
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 208 NHIS---DLRALAGLKNLDVLEL 227
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 143 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 193
Query: 541 HWMGNLSYLEVLLMSKNFF 559
+ L+ L+ L +SKN
Sbjct: 194 --LAGLTKLQNLYLSKNHI 210
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 187
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 188 NHIS---DLRALAGLKNLDVLEL 207
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 123 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173
Query: 541 HWMGNLSYLEVLLMSKNFF 559
+ L+ L+ L +SKN
Sbjct: 174 --LAGLTKLQNLYLSKNHI 190
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 187
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 188 NHIS---DLRALAGLKNLDVLEL 207
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 123 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173
Query: 541 HWMGNLSYLEVLLMSKN 557
+ L+ L+ L +SKN
Sbjct: 174 --LAGLTKLQNLYLSKN 188
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 112/262 (42%), Gaps = 55/262 (20%)
Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL- 177
SL +FH +L +L +SNN+ E + E+ + SL+ L++ + + D S+ L
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195
Query: 178 ------NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK 231
N L++L I +E LD S N IN +G ++
Sbjct: 196 HANVSYNLLSTLAIPIA-------------------VEELDASHNSINV---VRGPVNVE 233
Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN-- 289
L +L L+ NN+ D L N L +D+S+N+L + LE L + +N
Sbjct: 234 -LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 290 ---NFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN---V 343
N G P+ + L+VL LS N++L V E P F RL N L+ +
Sbjct: 291 VALNLYGQ-PIPT------LKVLDLS-HNHLLHV--ERNQPQFD----RLENLYLDHNSI 336
Query: 344 IPPFLLHQFDLKYLDLSHNDLD 365
+ L LK L LSHND D
Sbjct: 337 VTLKLSTHHTLKNLTLSHNDWD 358
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294
VL L N I P + +T+L LD+ NQL+ + LT L L+L DN + +
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-S 92
Query: 295 FPLSSLANHSKL 306
P + N L
Sbjct: 93 IPRGAFDNLRSL 104
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLK--RLKILNLGYNYFDDSIFLYLNALTSLTTLIL 188
+Q+L L+NN E+ T LK L L+L YN D + L SL L L
Sbjct: 224 IQNLSLANNQLLATSES----TFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSL 279
Query: 189 RENNIQ--GSRTKQGLSKLKNLEALDLSSNFINGS--------LESQGICELKNLFVLNL 238
NNIQ R+ GLS NL L L F S ++ LK L LN+
Sbjct: 280 EYNNIQRLSPRSFYGLS---NLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNM 336
Query: 239 EKNNIEDHLPNCLNNMTRLKVLDIS 263
+ NNI N + LK L +S
Sbjct: 337 DDNNIPSTKSNTFTGLVSLKYLSLS 361
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
D S KLT IP ++ I VLN++HN L P +F+ + LD N +S P
Sbjct: 10 DCSHLKLT-HIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFAT 858
L L N+ +N LS + F T
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCT 97
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 205
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 206 NHIS---DLRALAGLKNLDVLEL 225
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 141 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 191
Query: 541 HWMGNLSYLEVLLMSKNFF 559
+ L+ L+ L +SKN
Sbjct: 192 --LAGLTKLQNLYLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 205
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 206 NHIS---DLRALAGLKNLDVLEL 225
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 141 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 191
Query: 541 HWMGNLSYLEVLLMSKNFF 559
+ L+ L+ L +SKN
Sbjct: 192 --LAGLTKLQNLYLSKNHI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 205
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 206 NHIS---DLRALAGLKNLDVLEL 225
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 141 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 191
Query: 541 HWMGNLSYLEVLLMSKNFF 559
+ L+ L+ L +SKN
Sbjct: 192 --LAGLTKLQNLYLSKNHI 208
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
NL+ +L+ ++G+L G L+L N ++ LP + L VLD+SFN+
Sbjct: 61 NLDRCELTKLQVDGTLPVLG--------TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNML 318
L+ + L L+ L L N + T P L KLE L L+ NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA--NNQL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
NL+ +L+ ++G+L G L+L N ++ LP + L VLD+SFN+
Sbjct: 61 NLDRCELTKLQVDGTLPVLG--------TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNML 318
L+ + L L+ L L N + T P L KLE L L+ NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA--NNQL 160
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 21/175 (12%)
Query: 126 HPFE--ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSL 183
+PF+ + +LDLS N F+ + +D + K ++ L L +Y S F + N
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK-IQSLILSNSYNMGSSFGHTN----- 260
Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES--QGICELKNLFVLNLEKN 241
+N T +GL + ++ DLS + I L+S +L+ L + E N
Sbjct: 261 ---FKDPDNF----TFKGL-EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 242 NIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
I+D N +T LK L + NQL I LTSL+ + L N ++ + P
Sbjct: 313 KIDD---NAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 35/139 (25%)
Query: 117 VLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF------- 169
+ LN + F ++LQ L + + V N + L SL IL L YN F
Sbjct: 42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI---ILKLDYNQFLQLETGA 98
Query: 170 -----------------DDSIFL--YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEA 210
D ++ + LTSL L+LR+NNI+ + ++
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 211 LDLSSNFINGSLESQGICE 229
LDL+ N + + ICE
Sbjct: 159 LDLTFNKV------KSICE 171
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 430 YMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG 489
Y+D+S N +S + +++L+FL + + L + +N F G
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG----------------LVIRNNTFRG 77
Query: 490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYL 549
+ L Q+L LE F+G L+ L + + +LSG+ + L+ L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLAN---LEVLTLTQCNLDGAVLSGN---FFKPLTSL 131
Query: 550 EVLLMSKNFFEGNIPVQL-LNHRRLQLF--------SVSENYLSGFMTTSFNISSVEHLY 600
E+L++ N + P LN RR + S+ E L F F + + +
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 601 LQKNS---LSGPIPIALFRSSNLLTLDLRDNGF 630
LQ + L F+++++ TLDL NGF
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 85/222 (38%), Gaps = 54/222 (24%)
Query: 338 NCSLNVIPPFLLHQFDLKYLDLSHNDL----DGAFPTWALQNNTKLEV------LLLTNN 387
N L+ +P H + Y+DLS N + + +F LQ+ L+V L++ NN
Sbjct: 19 NRGLHQVPELPAH---VNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNN 73
Query: 388 SFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIA 447
+F G L K D+ L + + F G
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNG-------------------------------- 101
Query: 448 EMKELRFLDLSKNNFSGE-LSAALLTSCFSLLWLGLSDNNFYGRIFPG--YMNLTQLQYL 504
+ L L L++ N G LS SL L L DNN +I P ++N+ + L
Sbjct: 102 -LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVL 159
Query: 505 YLENNKFSGKIEEGLL--KSKKLVELRMSSNMLSGHIPHWMG 544
L NK EE LL + K LR+SS L +W+G
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
NL+ +L+ ++G+L G L+L N ++ LP + L VLD+SFN+
Sbjct: 61 NLDRCELTKLQVDGTLPVLG--------TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNML 318
L+ + L L+ L L N + T P L KLE L L+ NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA--NNQL 160
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 26/224 (11%)
Query: 229 ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFD 288
L++L +L L +N+I N + L L++ N+L+ L+ L+ L L +
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 289 NNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFL 348
N E + P + L L L + + F L+ L L C+L I P L
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNL 203
Query: 349 LHQFDLKYLDLSHNDLDGAFPT-----------WALQNNTKLEVLLLTNNSFTGNLQLPD 397
L LDLS N L P W +Q+ ++ ++ N+F
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS----QIQVIERNAF-------- 251
Query: 398 DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGN 441
D L ++++ NN T LP D+ L L + + +N + N
Sbjct: 252 DNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCN 294
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 184
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 185 NHIS---DLRALAGLKNLDVLEL 204
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 120 GISDIN-------GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170
Query: 541 HWMGNLSYLEVLLMSKN 557
+ L+ L+ L +SKN
Sbjct: 171 --LAGLTKLQNLYLSKN 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
NL+ +L+ ++G+L G L+L N ++ LP + L VLD+SFN+
Sbjct: 61 NLDRCELTKLQVDGTLPVLG--------TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNML 318
L+ + L L+ L L N + T P L KLE L L+ NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA--NNQL 160
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
L +L+ L LG N D L+ LT L TL L +N I GL+KL+NL LS
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY---LSK 182
Query: 216 NFINGSLESQGICELKNLFVLNL 238
N I+ + + + LKNL VL L
Sbjct: 183 NHIS---DLRALAGLKNLDVLEL 202
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 118 GISDIN-------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 168
Query: 541 HWMGNLSYLEVLLMSKNFF 559
+ L+ L+ L +SKN
Sbjct: 169 --LAGLTKLQNLYLSKNHI 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
NL+ +L+ ++G+L G L+L N ++ LP + L VLD+SFN+
Sbjct: 61 NLDRCELTKLQVDGTLPVLG--------TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
L+ + L L+ L L N + T P L KLE L L+
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA 156
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 112/262 (42%), Gaps = 55/262 (20%)
Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL- 177
SL +FH +L +L +SNN+ E + E+ + SL+ L++ + + D S+ L
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189
Query: 178 ------NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK 231
N L++L I +E LD S N IN +G ++
Sbjct: 190 HANVSYNLLSTLAIPIA-------------------VEELDASHNSINV---VRGPVNVE 227
Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN-- 289
L +L L+ NN+ D L N L +D+S+N+L + LE L + +N
Sbjct: 228 -LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 290 ---NFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN---V 343
N G P+ + L+VL LS N++L V+ P F RL N L+ +
Sbjct: 285 VALNLYGQ-PIPT------LKVLDLS-HNHLLHVERNQ--PQFD----RLENLYLDHNSI 330
Query: 344 IPPFLLHQFDLKYLDLSHNDLD 365
+ L LK L LSHND D
Sbjct: 331 VTLKLSTHHTLKNLTLSHNDWD 352
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
+ LE+N I+ P + +L+ +D+S NQ+S P L SL L L+ N
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
VL+L N I P +++T+L L+++ NQL+ + LT L +LAL N +
Sbjct: 44 VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
+ LE+N I+ P + +L+ +D+S NQ+S P L SL L L+ N
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLS-- 268
LDL N I +L +L L L +N + P NN+ L+ L + N+L
Sbjct: 37 LDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 269 --GSFPSIISNLTSLE-----YLALFDNNFEGTFPLSSL---------------ANHSKL 306
G F +SNLT L+ + L D F+ + L SL + + L
Sbjct: 96 PLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQ-FDLKYLDLSH 361
E L L + N+ + TE L VLRL + ++N I + + + LK L++SH
Sbjct: 155 EQLTLE-KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
>pdb|3KY7|A Chain A, 2.35 Angstrom Resolution Crystal Structure Of A Putative
Trna (Guanine-7-)-Methyltransferase (Trmd) From
Staphylococcus Aureus Subsp. Aureus Mrsa252
Length = 269
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 276 SNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF 325
SN ++YL LF F+G NHS ++ + NN LQ+ T NF
Sbjct: 22 SNAMKIDYLTLFPEMFDGVL------NHS---IMKRAQENNKLQINTVNF 62
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
QGI N LNL +NNI+ + ++ L+VL + N + + L SL L
Sbjct: 71 QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128
Query: 285 ALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI 344
LFD N+ P + SKL L L RNN ++ +P+ + N +
Sbjct: 129 ELFD-NWLTVIPSGAFEYLSKLRELWL--RNNPIE---------------SIPSYAFNRV 170
Query: 345 PPFL-LHQFDLKYLD-LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF 402
P + L +LK L+ +S +G F N K L + N NL
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLF-------NLKYLNLGMCNIKDMPNL----TPLVG 219
Query: 403 LHHLDISSNNFTGKLPQDMGII--LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKN 460
L L++S N+F P + L+KL M+ + E N +A + E L+L+ N
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE---LNLAHN 276
Query: 461 NFS 463
N S
Sbjct: 277 NLS 279
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
G+SD N G ++L QL+ LYL NNK + L + KL L + N +S +P
Sbjct: 118 GISDIN-------GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP 168
Query: 541 HWMGNLSYLEVLLMSKN 557
+ L+ L+ L +SKN
Sbjct: 169 --LACLTKLQNLYLSKN 183
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
VL L N I P + +T+L LD+ NQL+ + LT L L+L DN +
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNI 243
TTL+ +NN K L++L AL L +N I+ + + L+ L L + KN++
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114
Query: 244 EDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLE 282
+ PN +++ L++ D ++ S + N+ +E
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,213,130
Number of Sequences: 62578
Number of extensions: 1111649
Number of successful extensions: 3596
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2388
Number of HSP's gapped (non-prelim): 615
length of query: 911
length of database: 14,973,337
effective HSP length: 108
effective length of query: 803
effective length of database: 8,214,913
effective search space: 6596575139
effective search space used: 6596575139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)