Query 043567
Match_columns 911
No_of_seqs 756 out of 5348
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.9E-72 1.5E-76 701.2 47.3 584 38-874 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.7E-58 1.5E-62 574.7 36.4 513 207-871 70-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.6E-41 3.6E-46 344.2 -13.9 479 202-847 41-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 4.8E-41 1E-45 340.8 -13.1 481 129-685 45-545 (565)
5 KOG4194 Membrane glycoprotein 100.0 7.4E-36 1.6E-40 316.0 9.5 364 160-531 81-447 (873)
6 KOG4194 Membrane glycoprotein 100.0 3.2E-35 6.9E-40 311.2 9.3 363 404-842 81-447 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.8E-35 4E-40 329.8 -4.0 415 211-679 3-420 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.2E-35 6.9E-40 327.9 -2.4 480 134-677 3-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.8E-33 3.9E-38 299.2 -1.3 283 399-690 5-291 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.2E-33 1.4E-37 295.1 -2.3 370 205-659 6-379 (1255)
11 KOG4237 Extracellular matrix p 99.9 5.1E-27 1.1E-31 239.1 -1.5 420 395-844 61-498 (498)
12 KOG4237 Extracellular matrix p 99.9 2.4E-26 5.2E-31 234.2 -2.8 399 406-848 51-478 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4E-27 253.8 25.3 308 427-821 590-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 2.8E-22 6E-27 252.2 26.1 341 418-845 550-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 9E-22 1.9E-26 229.1 17.1 264 450-853 201-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.6E-26 228.1 14.5 268 426-833 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1E-19 2.2E-24 213.7 12.4 78 763-847 347-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.5E-19 3.2E-24 212.4 12.5 21 33-53 56-76 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-19 4.7E-24 196.9 1.0 181 479-679 2-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-18 6.7E-23 187.7 5.1 252 425-677 22-318 (319)
21 KOG0617 Ras suppressor protein 99.7 1E-18 2.3E-23 158.5 -3.5 187 587-851 26-216 (264)
22 KOG0617 Ras suppressor protein 99.7 2.4E-18 5.3E-23 156.1 -4.8 182 495-682 29-215 (264)
23 PLN03150 hypothetical protein; 99.5 5.3E-14 1.2E-18 165.5 8.0 118 763-880 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 5.6E-13 1.2E-17 156.9 14.0 155 35-242 367-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 6.9E-15 1.5E-19 157.7 -4.5 176 593-849 74-249 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.5E-18 148.5 -4.8 194 523-821 75-271 (722)
27 COG4886 Leucine-rich repeat (L 99.3 5.7E-12 1.2E-16 142.1 8.5 123 551-677 97-220 (394)
28 COG4886 Leucine-rich repeat (L 99.2 3.3E-11 7.1E-16 136.0 9.2 102 575-679 97-199 (394)
29 KOG3207 Beta-tubulin folding c 99.0 7.5E-11 1.6E-15 123.6 -0.6 233 134-392 98-341 (505)
30 KOG1909 Ran GTPase-activating 99.0 7.9E-11 1.7E-15 120.3 -0.7 243 125-390 26-311 (382)
31 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.8E-15 121.9 0.4 217 126-365 118-339 (505)
32 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.4E-15 108.4 3.9 127 155-287 17-148 (175)
33 KOG1259 Nischarin, modulator o 98.9 1.8E-10 4E-15 114.5 1.2 87 762-851 329-416 (490)
34 PF14580 LRR_9: Leucine-rich r 98.9 9.6E-10 2.1E-14 106.0 3.5 126 178-310 16-146 (175)
35 KOG1909 Ran GTPase-activating 98.9 5E-10 1.1E-14 114.5 1.3 135 498-655 156-311 (382)
36 PF08263 LRRNT_2: Leucine rich 98.8 3.2E-09 6.9E-14 76.7 4.3 42 39-87 2-43 (43)
37 KOG1259 Nischarin, modulator o 98.8 1E-09 2.2E-14 109.2 0.7 134 543-681 280-414 (490)
38 PF13855 LRR_8: Leucine rich r 98.7 8.5E-09 1.8E-13 81.6 3.7 59 763-821 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.7 9.8E-09 2.1E-13 81.2 4.0 61 786-846 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.7 1.5E-08 3.3E-13 122.0 6.5 202 157-365 523-730 (889)
41 KOG0531 Protein phosphatase 1, 98.7 2E-09 4.4E-14 121.6 -1.3 216 157-390 72-290 (414)
42 KOG0531 Protein phosphatase 1, 98.6 4.5E-09 9.8E-14 118.7 -1.3 247 425-684 71-323 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.5 1.4E-07 3.1E-12 113.7 7.5 129 377-509 523-652 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 5.6E-09 1.2E-13 104.2 -4.5 159 158-317 186-351 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 6E-09 1.3E-13 115.6 -7.9 178 124-315 104-290 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 1E-08 2.3E-13 102.3 -6.3 179 130-313 186-372 (419)
47 KOG4579 Leucine-rich repeat (L 98.3 3.6E-08 7.8E-13 87.4 -3.4 90 763-855 78-167 (177)
48 COG5238 RNA1 Ran GTPase-activa 98.2 5.6E-07 1.2E-11 89.1 1.3 93 126-218 27-132 (388)
49 KOG1859 Leucine-rich repeat pr 98.1 2.4E-07 5.3E-12 103.2 -4.2 125 476-607 165-292 (1096)
50 KOG4579 Leucine-rich repeat (L 98.0 5.4E-07 1.2E-11 80.0 -2.3 116 569-687 51-167 (177)
51 KOG2982 Uncharacterized conser 98.0 1.9E-06 4.2E-11 86.4 0.7 85 180-265 70-156 (418)
52 COG5238 RNA1 Ran GTPase-activa 97.9 4.6E-06 9.9E-11 82.7 2.6 41 227-267 88-132 (388)
53 PRK15386 type III secretion pr 97.9 3.4E-05 7.5E-10 83.7 8.9 73 593-677 51-123 (426)
54 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.3E-10 57.6 3.4 36 787-823 2-37 (44)
55 KOG2982 Uncharacterized conser 97.8 4.7E-06 1E-10 83.8 0.1 110 180-289 44-156 (418)
56 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 56.4 3.0 38 762-800 1-38 (44)
57 KOG4341 F-box protein containi 97.7 1.5E-06 3.3E-11 91.4 -5.0 87 351-437 293-383 (483)
58 KOG3665 ZYG-1-like serine/thre 97.7 2.1E-05 4.6E-10 92.8 3.0 149 157-308 122-279 (699)
59 KOG4341 F-box protein containi 97.5 5.2E-06 1.1E-10 87.5 -4.0 62 256-317 139-203 (483)
60 PRK15386 type III secretion pr 97.5 0.0003 6.5E-09 76.5 8.9 54 474-533 51-104 (426)
61 KOG1644 U2-associated snRNP A' 97.5 0.00019 4.1E-09 68.8 5.7 83 130-218 43-125 (233)
62 KOG1644 U2-associated snRNP A' 97.3 0.00048 1E-08 66.0 6.0 105 183-292 21-126 (233)
63 PF13306 LRR_5: Leucine rich r 97.3 0.0006 1.3E-08 63.2 6.7 121 177-306 8-128 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.4E-09 73.5 1.6 88 126-219 40-129 (260)
65 PF13306 LRR_5: Leucine rich r 97.2 0.00081 1.8E-08 62.3 6.9 99 176-281 30-128 (129)
66 KOG3665 ZYG-1-like serine/thre 97.2 0.00011 2.4E-09 86.9 0.8 109 181-291 122-232 (699)
67 KOG2123 Uncharacterized conser 96.7 8.5E-05 1.8E-09 74.3 -4.9 84 128-219 18-101 (388)
68 KOG2739 Leucine-rich acidic nu 96.3 0.003 6.4E-08 63.5 3.1 67 174-244 36-104 (260)
69 KOG2123 Uncharacterized conser 96.1 0.00084 1.8E-08 67.4 -1.9 68 421-490 36-103 (388)
70 PF00560 LRR_1: Leucine Rich R 96.0 0.0029 6.4E-08 38.0 1.0 19 812-831 2-20 (22)
71 KOG1947 Leucine rich repeat pr 95.9 0.0014 3.1E-08 76.1 -1.3 110 156-266 187-306 (482)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.004 8.7E-08 37.4 0.8 20 788-808 2-21 (22)
73 KOG1947 Leucine rich repeat pr 95.6 0.0034 7.4E-08 72.9 -0.0 225 126-364 185-439 (482)
74 KOG4308 LRR-containing protein 92.1 0.0028 6.2E-08 71.8 -9.5 164 130-293 88-276 (478)
75 KOG4308 LRR-containing protein 91.0 0.0033 7.1E-08 71.3 -10.4 170 124-293 110-304 (478)
76 PF13504 LRR_7: Leucine rich r 89.8 0.22 4.7E-06 27.7 1.4 10 788-797 3-12 (17)
77 KOG0473 Leucine-rich repeat pr 88.8 0.011 2.4E-07 58.0 -7.2 88 175-267 36-123 (326)
78 KOG0473 Leucine-rich repeat pr 88.1 0.021 4.6E-07 56.1 -5.7 83 762-847 42-124 (326)
79 smart00369 LRR_TYP Leucine-ric 86.4 0.63 1.4E-05 29.1 2.2 19 206-225 2-20 (26)
80 smart00370 LRR Leucine-rich re 86.4 0.63 1.4E-05 29.1 2.2 19 206-225 2-20 (26)
81 PF13516 LRR_6: Leucine Rich r 83.4 0.22 4.7E-06 30.5 -1.0 11 788-798 4-14 (24)
82 smart00369 LRR_TYP Leucine-ric 83.1 1 2.2E-05 28.1 2.0 13 787-799 3-15 (26)
83 smart00370 LRR Leucine-rich re 83.1 1 2.2E-05 28.1 2.0 13 787-799 3-15 (26)
84 PF13516 LRR_6: Leucine Rich r 79.0 0.63 1.4E-05 28.4 -0.0 13 158-170 3-15 (24)
85 KOG3864 Uncharacterized conser 75.6 0.49 1.1E-05 46.1 -1.7 35 256-290 102-136 (221)
86 smart00365 LRR_SD22 Leucine-ri 72.4 2.9 6.3E-05 26.2 1.7 15 809-823 1-15 (26)
87 smart00364 LRR_BAC Leucine-ric 67.6 3.7 7.9E-05 25.7 1.4 13 787-799 3-15 (26)
88 KOG3864 Uncharacterized conser 65.7 1.4 3E-05 43.1 -1.1 31 161-191 105-135 (221)
89 smart00368 LRR_RI Leucine rich 58.3 7.4 0.00016 24.8 1.7 13 811-823 3-15 (28)
90 KOG4242 Predicted myosin-I-bin 54.9 36 0.00079 37.9 7.1 37 354-390 415-453 (553)
91 KOG3763 mRNA export factor TAP 36.0 20 0.00044 40.6 1.8 35 328-362 217-254 (585)
92 KOG4242 Predicted myosin-I-bin 33.8 44 0.00095 37.3 3.7 14 379-392 356-369 (553)
93 KOG3763 mRNA export factor TAP 29.5 41 0.00089 38.3 2.8 65 350-414 216-283 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-72 Score=701.21 Aligned_cols=584 Identities=34% Similarity=0.523 Sum_probs=420.1
Q ss_pred hHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeecCCCCcEEEEecCCCCcccccccccccCCcc
Q 043567 38 LKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMV 117 (911)
Q Consensus 38 ~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~ 117 (911)
.++|++||++||+++. +|.+.+++|... .+||.|.||+|+. .++|+.++|++..+
T Consensus 27 ~~~~~~~l~~~~~~~~------~~~~~~~~w~~~----~~~c~w~gv~c~~-~~~v~~L~L~~~~i-------------- 81 (968)
T PLN00113 27 HAEELELLLSFKSSIN------DPLKYLSNWNSS----ADVCLWQGITCNN-SSRVVSIDLSGKNI-------------- 81 (968)
T ss_pred CHHHHHHHHHHHHhCC------CCcccCCCCCCC----CCCCcCcceecCC-CCcEEEEEecCCCc--------------
Confidence 4689999999999984 456678999754 7899999999985 56888877766543
Q ss_pred cccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCcc
Q 043567 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSR 197 (911)
Q Consensus 118 ~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 197 (911)
++.++ ..+..+++|++|++++|.+.+.+|.
T Consensus 82 ------------------------~~~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~---------------------- 111 (968)
T PLN00113 82 ------------------------SGKIS----SAIFRLPYIQTINLSNNQLSGPIPD---------------------- 111 (968)
T ss_pred ------------------------cccCC----hHHhCCCCCCEEECCCCccCCcCCh----------------------
Confidence 22222 3344455555555555554444433
Q ss_pred ChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccC
Q 043567 198 TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN 277 (911)
Q Consensus 198 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 277 (911)
..+.++++|++|+|++|.+++.+|. +.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..+++
T Consensus 112 --~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 186 (968)
T PLN00113 112 --DIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186 (968)
T ss_pred --HHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh
Confidence 3333444555555555554444442 23455555555555555555555556666666666666655555555556
Q ss_pred CCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEE
Q 043567 278 LTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL 357 (911)
Q Consensus 278 l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L 357 (911)
+++|++|++++|.+.+.+|. .+ ..+.+|++|
T Consensus 187 l~~L~~L~L~~n~l~~~~p~-~l------------------------------------------------~~l~~L~~L 217 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPR-EL------------------------------------------------GQMKSLKWI 217 (968)
T ss_pred CcCCCeeeccCCCCcCcCCh-HH------------------------------------------------cCcCCccEE
Confidence 66666666655555544331 11 122233334
Q ss_pred ECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCc
Q 043567 358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH 437 (911)
Q Consensus 358 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~ 437 (911)
++++|.+++.+|..+. .+++|++|++++|.+++.+|..+.. +++|++|++++|.
T Consensus 218 ~L~~n~l~~~~p~~l~-------------------------~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~ 271 (968)
T PLN00113 218 YLGYNNLSGEIPYEIG-------------------------GLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNK 271 (968)
T ss_pred ECcCCccCCcCChhHh-------------------------cCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCe
Confidence 4444444444443221 2334555555666665555555543 5555555555555
Q ss_pred cccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccc
Q 043567 438 FEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEE 517 (911)
Q Consensus 438 l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 517 (911)
+++.+|..+.++++|++|++++|.+.+. +|..+.++++|+.|++++|.+++.+|.
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-------------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGE-------------------------IPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccC-------------------------CChhHcCCCCCcEEECCCCccCCcCCh
Confidence 5555555555555555555555555544 444455566667777777777666676
Q ss_pred cccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccc
Q 043567 518 GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSV 596 (911)
Q Consensus 518 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L 596 (911)
.+..+++|++|++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|+.+++++|.+.+.+|..+ .+++|
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777666 67788
Q ss_pred cEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCC
Q 043567 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676 (911)
Q Consensus 597 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N 676 (911)
+.|++++|++++.+|..+..++.|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n 485 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRN 485 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCC
Confidence 888888888888888888899999999999999999999888899999999999999999888765 4588999999999
Q ss_pred cCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeec
Q 043567 677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVY 756 (911)
Q Consensus 677 ~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (911)
+++|.+|..+.++
T Consensus 486 ~l~~~~~~~~~~l------------------------------------------------------------------- 498 (968)
T PLN00113 486 QFSGAVPRKLGSL------------------------------------------------------------------- 498 (968)
T ss_pred ccCCccChhhhhh-------------------------------------------------------------------
Confidence 9999888766543
Q ss_pred cCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCC
Q 043567 757 NGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFL 836 (911)
Q Consensus 757 ~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 836 (911)
+.|+.|++++|+++|.+|+.++++++|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|
T Consensus 499 -----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 499 -----SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred -----hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence 357789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCcCeecCCCCCCCCccCccccCCCCCCCCCc
Q 043567 837 SNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPT 874 (911)
Q Consensus 837 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 874 (911)
+++++++|+++|.+|..++|.+|.+.+|.||+++||.+
T Consensus 574 ~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-58 Score=574.69 Aligned_cols=513 Identities=34% Similarity=0.527 Sum_probs=408.1
Q ss_pred CCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccC-CCCCCcEEEccCCcCCccCcccccCCCCCCeee
Q 043567 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLN-NMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA 285 (911)
Q Consensus 207 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 285 (911)
+++.|||++|.++|.++. .+..+++|++|+|++|.+++.+|..+. .+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 455555555555544433 345555555555555555444444332 444455555544444444432 2233444444
Q ss_pred ccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567 286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD 365 (911)
Q Consensus 286 L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~ 365 (911)
+++|.+++. +|..+..+++|++|++++|.+.
T Consensus 147 Ls~n~~~~~-------------------------------------------------~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 147 LSNNMLSGE-------------------------------------------------IPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred CcCCccccc-------------------------------------------------CChHHhcCCCCCEEECccCccc
Confidence 444433332 3344445556666666777766
Q ss_pred CCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchh
Q 043567 366 GAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASS 445 (911)
Q Consensus 366 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 445 (911)
+.+|..+. ++ ++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..
T Consensus 178 ~~~p~~~~-~l------------------------~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 178 GKIPNSLT-NL------------------------TSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred ccCChhhh-hC------------------------cCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChh
Confidence 66665432 44 44555555555565666766653 777777777777777777777
Q ss_pred hhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCC
Q 043567 446 IAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525 (911)
Q Consensus 446 l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 525 (911)
++++++|++|++++|.+++.+|..+ ..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 7777888888888887777777653 567788888888888887788888889999999999999999999999999999
Q ss_pred cEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccC
Q 043567 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKN 604 (911)
Q Consensus 526 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n 604 (911)
++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+ .+++|+.|++++|
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred cccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCc
Q 043567 605 SLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS 684 (911)
Q Consensus 605 ~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 684 (911)
++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|.
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccc
Q 043567 685 CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYM 764 (911)
Q Consensus 685 ~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 764 (911)
.+. .+.|
T Consensus 471 ~~~-------------------------------------------------------------------------~~~L 477 (968)
T PLN00113 471 SFG-------------------------------------------------------------------------SKRL 477 (968)
T ss_pred ccc-------------------------------------------------------------------------cccc
Confidence 432 1357
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCC
Q 043567 765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN 844 (911)
Q Consensus 765 ~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 844 (911)
+.||+++|+++|.+|..+.++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..+..++.|++|++++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeecCCCC-CCCCccCccccCCCCCCC
Q 043567 845 NLSGLIPDK-GQFATFDESSYRGNLHLC 871 (911)
Q Consensus 845 ~l~g~iP~~-~~~~~~~~~~~~gn~~lc 871 (911)
+++|.+|.. ..+..+....+.+|+..+
T Consensus 558 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 558 QLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cccccCChhHhcCcccCEEeccCCccee
Confidence 999999976 344555555667777554
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=344.20 Aligned_cols=479 Identities=27% Similarity=0.412 Sum_probs=299.9
Q ss_pred hcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCC
Q 043567 202 LSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL 281 (911)
Q Consensus 202 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 281 (911)
...-.-|+.+++++|.+. .+.. .+.++..|.+|++.+|+++. .|++++.+.+++.++.++|+++ .+|+.++.+.+|
T Consensus 41 wW~qv~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l 116 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL 116 (565)
T ss_pred hhhhcchhhhhhccCchh-hccH-hhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh
Confidence 334456777788888776 3333 36777777777777777776 5667777777777777777777 667777777777
Q ss_pred CeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCC
Q 043567 282 EYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSH 361 (911)
Q Consensus 282 ~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~ 361 (911)
+.++.+.|.+. ++| ..++.+..++ .++..+|++.++|+.+..+.++..+++.+
T Consensus 117 ~~l~~s~n~~~-el~-~~i~~~~~l~-------------------------dl~~~~N~i~slp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELP-DSIGRLLDLE-------------------------DLDATNNQISSLPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred hhhhcccccee-ecC-chHHHHhhhh-------------------------hhhccccccccCchHHHHHHHHHHhhccc
Confidence 77777777765 333 1233332222 22333444555555555555555555555
Q ss_pred CCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccc
Q 043567 362 NDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGN 441 (911)
Q Consensus 362 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~ 441 (911)
|.+. ..|+... +++.|+ +||.-.|-++ .+|+.++. +.+|..|++..|++. .
T Consensus 170 n~l~-~l~~~~i-~m~~L~------------------------~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 170 NKLK-ALPENHI-AMKRLK------------------------HLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-F 220 (565)
T ss_pred cchh-hCCHHHH-HHHHHH------------------------hcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-c
Confidence 5554 2232222 133333 3333333332 56666653 666666666666665 3
Q ss_pred cchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccC
Q 043567 442 IASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLK 521 (911)
Q Consensus 442 ~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 521 (911)
.| +|..|..|+++.++.|++. .+|++..+.++++.+||+ .+|+++ .+|+.++.
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL------------------------RdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL------------------------RDNKLK-EVPDEICL 273 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec------------------------cccccc-cCchHHHH
Confidence 44 5666666666666666665 666665555555555554 445444 45555555
Q ss_pred CCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCC---CcEEE-------ccCc---------c
Q 043567 522 SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRR---LQLFS-------VSEN---------Y 582 (911)
Q Consensus 522 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~---L~~L~-------ls~n---------~ 582 (911)
+.+|++||+++|.++ .+|..++++ +|+.|.+.+|.+. .+-..+-+... |++|. ++.- .
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 555666666666555 445556665 5666666666544 22222211110 11110 0000 0
Q ss_pred cccccCcccccccccEEEcccCcccccccccccCCCC---CCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC
Q 043567 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSN---LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP 659 (911)
Q Consensus 583 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip 659 (911)
..+..|......+.+.|+++.-+++ .+|..++.... .+..+++.|++. ++|..+..+..+.+.-+.+|+..+-+|
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~ 428 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVP 428 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccch
Confidence 1111122224556778888888877 66766655544 778888888888 778887777776654444444445888
Q ss_pred hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccc
Q 043567 660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739 (911)
Q Consensus 660 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 739 (911)
..++.+++|..|+|++|.+. .+|..++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l-------------------------------------------------- 457 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSL-------------------------------------------------- 457 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhh--------------------------------------------------
Confidence 88888888888898888776 566554432
Q ss_pred ccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccC
Q 043567 740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819 (911)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 819 (911)
..|+.||+|.|+|. .+|+++..+..++.+-.++|++....|+.+.+|.+|..|||.+
T Consensus 458 ----------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 458 ----------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ----------------------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 24677899999887 8888888888888888888999877777799999999999999
Q ss_pred CcCcccCCCCCCCCCCCCeEeccCCcCe
Q 043567 820 NRLSGQIPPKLTELNFLSNFNVSYNNLS 847 (911)
Q Consensus 820 N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 847 (911)
|.+. .||+.++++++|++|++++|++.
T Consensus 515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-hCChhhccccceeEEEecCCccC
Confidence 9998 78889999999999999999988
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.8e-41 Score=340.83 Aligned_cols=481 Identities=25% Similarity=0.347 Sum_probs=314.2
Q ss_pred CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567 129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL 208 (911)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 208 (911)
..++.|++++|.+....+ .+.++..|.+|++++|++. ..|++++.+..++.++.++|.++ .+| ..+..+.+|
T Consensus 45 v~l~~lils~N~l~~l~~-----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE-----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhhccH-----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhh
Confidence 345666677776654433 4556666666666666655 34555555555555555555554 344 334555555
Q ss_pred CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccC
Q 043567 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFD 288 (911)
Q Consensus 209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 288 (911)
+.+++++|.+. .++++ ++.+..|+.++..+|+++. .|+++..+.+|..+++.+|++....|..+. ++.|++||...
T Consensus 117 ~~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhhcccccee-ecCch-HHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence 55555555554 34332 4445555555555555544 344455555555555555554432222222 44444444444
Q ss_pred CcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCC
Q 043567 289 NNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAF 368 (911)
Q Consensus 289 n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~ 368 (911)
|.+ +++|+.++.+.+|+.|++.+|.+. .+
T Consensus 193 N~L--------------------------------------------------~tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 193 NLL--------------------------------------------------ETLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred hhh--------------------------------------------------hcCChhhcchhhhHHHHhhhcccc-cC
Confidence 444 444444444444444444444443 33
Q ss_pred chhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhc
Q 043567 369 PTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE 448 (911)
Q Consensus 369 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 448 (911)
|. |.+++.|+.+++..|.+.-........++++.+||+.+|+++ ++|++++. +++|++||+++|.++ ..|.++++
T Consensus 222 Pe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 222 PE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCccccc
Confidence 42 234444555555554444221111224555666666666666 88999875 889999999999998 56778999
Q ss_pred CCCCcEEeccCcccCCcccHHHHhcccc--cceee-------ccCcccc----c----ccCCCCCCCCCCCEEEccCccc
Q 043567 449 MKELRFLDLSKNNFSGELSAALLTSCFS--LLWLG-------LSDNNFY----G----RIFPGYMNLTQLQYLYLENNKF 511 (911)
Q Consensus 449 l~~L~~L~Ls~n~l~g~i~~~~~~~~~~--L~~L~-------L~~n~l~----~----~~~~~~~~l~~L~~L~L~~n~l 511 (911)
+ .|+.|.+.+|.+. +|-.++...-+. |++|. ++.-.-. . ...+....+.+.+.|++++-++
T Consensus 297 l-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred c-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 9 8999999999886 555554322111 22221 1111000 0 0111223456788999999999
Q ss_pred cccccccccCCCC---CcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccC
Q 043567 512 SGKIEEGLLKSKK---LVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMT 588 (911)
Q Consensus 512 ~~~~p~~l~~l~~---L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~ 588 (911)
+ .+|+....... .+.++++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+...+.
T Consensus 375 t-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~ 452 (565)
T KOG0472|consen 375 T-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE 452 (565)
T ss_pred c-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence 8 56665544444 889999999998 788888887777665444555555899999999999999999998887666
Q ss_pred cccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCC
Q 043567 589 TSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL 668 (911)
Q Consensus 589 ~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L 668 (911)
+.+.+..|+.++++.|+|. .+|..+.....++.+-.++|++...-|+.+.++.+|.+|||.+|.+. +||..++++++|
T Consensus 453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL 530 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL 530 (565)
T ss_pred hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence 6668888999999999997 78999998889999999999999777778999999999999999998 899999999999
Q ss_pred CeEEcCCCcCCCCCCcc
Q 043567 669 GMMDLSHNKFNGSIPSC 685 (911)
Q Consensus 669 ~~L~Ls~N~l~g~ip~~ 685 (911)
++|+|++|+|. .|..
T Consensus 531 ~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 531 RHLELDGNPFR--QPRH 545 (565)
T ss_pred eEEEecCCccC--CCHH
Confidence 99999999997 5543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-36 Score=315.99 Aligned_cols=364 Identities=25% Similarity=0.263 Sum_probs=224.4
Q ss_pred cEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEecc
Q 043567 160 KILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239 (911)
Q Consensus 160 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 239 (911)
+.||+++|.++...+..|.++++|+.+++..|.++ .+| .......+|+.|+|.+|.|+ ++..+.+..++.|++|||+
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP-~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIP-RFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcc-cccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence 44666666666666666666666666666666665 455 22233344666666666665 5555556666666666666
Q ss_pred CCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcccc
Q 043567 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ 319 (911)
Q Consensus 240 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~ 319 (911)
.|.|+.+....|..-.++++|+|++|.|+......|.++.+|..|.|++|+++ ++|...|.++++|+.|+|.. +.+..
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnr-N~iri 235 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNR-NRIRI 235 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccc-cceee
Confidence 66666654455665566666666666666665666666666666666666666 66666666666666666643 22333
Q ss_pred ccccCcCCCCCceEEECCCCCCCCCChhhh-ccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCC
Q 043567 320 VQTENFLPTFQLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD 398 (911)
Q Consensus 320 ~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 398 (911)
+....|.++++|+.|.+..|.+..+.+..+ .+.++++|+|+.|+++..--.|++ ++++|+.|+|++|.+.......+.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhh
Confidence 344466777777777777777766665443 455777788887777755555666 677777777777777655444445
Q ss_pred CCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCccc--HHHHhcccc
Q 043567 399 KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS--AALLTSCFS 476 (911)
Q Consensus 399 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~--~~~~~~~~~ 476 (911)
.+++|++|+|++|+++ .+++.-+..+..|++|.|++|.+...-...|..+++|++|||++|.+++.|. +..|.++++
T Consensus 315 ftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 6666666666666666 5555555556666666666666665555556666666666666666654443 233445555
Q ss_pred cceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECc
Q 043567 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMS 531 (911)
Q Consensus 477 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 531 (911)
|+.|++.+|++..+...+|..+++|++|+|.+|.|-.+-|..|..+ .|++|.+.
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 5555555555555545555555555555555555555555555554 55555443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=311.20 Aligned_cols=363 Identities=23% Similarity=0.258 Sum_probs=201.5
Q ss_pred cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS 483 (911)
Q Consensus 404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~ 483 (911)
+.|++++|.+. .+....+..+++|+++++..|.++ .+|.......+|+.|+|.+|.|+ ++..+-+..++.|+.|||+
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence 34555555554 233333334555555555555555 44544444444555555555554 4444444555555555555
Q ss_pred CcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccccc
Q 043567 484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563 (911)
Q Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 563 (911)
.|.++....+.|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 55555554455555555666666666666555555555556666666666666444455555666666666666655322
Q ss_pred chhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCC
Q 043567 564 PVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642 (911)
Q Consensus 564 p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 642 (911)
-..|.++++|+.+.+..|.++..-...| .+..+++|+|..|+++..-..++.+++.|+.|+||+|.+...-++.+.-++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 3445556666666666666655555555 566666666666666554455556666666666666666655555666666
Q ss_pred CccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccccccccc
Q 043567 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSS 722 (911)
Q Consensus 643 ~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 722 (911)
+|++|+|++|+|+..-+++|..+..|++|.|++|+++..--..|.
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~----------------------------------- 362 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV----------------------------------- 362 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH-----------------------------------
Confidence 666666666666655555566666666666666655411111110
Q ss_pred ccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCc---cccCCCCCCEEECCCCcCC
Q 043567 723 MLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPS---EIGELQEIPVLNMSHNFLS 799 (911)
Q Consensus 723 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~i~~l~~L~~L~Ls~N~l~ 799 (911)
.+.+|..|||++|.+++.|.+ .+..|++|+.|+|.+|++.
T Consensus 363 -------------------------------------~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 363 -------------------------------------GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred -------------------------------------HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 123455566666666555443 3445666666666666665
Q ss_pred ccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 800 ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 800 g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
...-.+|..+.+||.|||.+|.|...-|..|..+ .|+.|-+.
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 4444556666666666666666665666666555 45554443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=329.79 Aligned_cols=415 Identities=27% Similarity=0.300 Sum_probs=218.5
Q ss_pred EeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCc
Q 043567 211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290 (911)
Q Consensus 211 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 290 (911)
+|++..++. .||...+ .-..++.|+++.|.+-...-+.+.+.-+|+.||+++|++. ..|..+..+..|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~-~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQIL-NNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhc-cHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 344445544 4554322 2222556666666554422233344445666777666665 566666666667777776666
Q ss_pred CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCch
Q 043567 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPT 370 (911)
Q Consensus 291 l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~ 370 (911)
+. ..| ....++ .+|+++.|.+|.+..+|..+..+.+|++|+++.|.+. .+|.
T Consensus 80 i~-~vp-~s~~~~-------------------------~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl 131 (1081)
T KOG0618|consen 80 IR-SVP-SSCSNM-------------------------RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPL 131 (1081)
T ss_pred Hh-hCc-hhhhhh-------------------------hcchhheeccchhhcCchhHHhhhcccccccchhccC-CCch
Confidence 65 444 222222 3344455556666667777777777777777777775 6666
Q ss_pred hhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCC
Q 043567 371 WALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMK 450 (911)
Q Consensus 371 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 450 (911)
.+. .++.++.+..++|..... . .-..++.+++..|.+.+.++.++.. ++. .|++.+|.++ -..+..+.
T Consensus 132 ~i~-~lt~~~~~~~s~N~~~~~----l-g~~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~ 199 (1081)
T KOG0618|consen 132 VIE-VLTAEEELAASNNEKIQR----L-GQTSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLA 199 (1081)
T ss_pred hHH-hhhHHHHHhhhcchhhhh----h-ccccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhcc
Confidence 544 566666666666621111 1 1112666667777666666666542 333 4777777765 22345566
Q ss_pred CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM 530 (911)
Q Consensus 451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 530 (911)
+|+.|....|++. .+. -.-++|+.|+.++|.++...+. ..-.+|+++++++|+++ .+|++++.+.+|+.++.
T Consensus 200 ~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 200 NLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNA 271 (1081)
T ss_pred chhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecc
Confidence 6777777766665 221 1334555666666655522211 11234555566665555 33455555555666655
Q ss_pred cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc--ccccccEEEcccCcccc
Q 043567 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYLQKNSLSG 608 (911)
Q Consensus 531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~Ls~n~l~~ 608 (911)
..|+++ .+|..+...++|+.|.+..|.++ .+|......+.|+.|++..|++...++..+ -..+|..|+.+.|++..
T Consensus 272 n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 272 NHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 555554 45555555555555555555555 455555555555555555555555444333 11224444555554442
Q ss_pred cccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCCh-hhhcCCCCCeEEcCCCcCC
Q 043567 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN-QICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 609 ~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~ 679 (911)
..-..=...+.|+.|.+.+|.++...-..+.+.+.|++|+|++|++. .+|+ .+.++..|+.|+||+|+++
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence 11111112334555555555555444444455555555555555554 2332 2344555555555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=327.89 Aligned_cols=480 Identities=27% Similarity=0.338 Sum_probs=296.1
Q ss_pred EeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeC
Q 043567 134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDL 213 (911)
Q Consensus 134 L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 213 (911)
+|.+.+.+.-++. .+..-..++.|+++.|.+-...-..+.+.-+|+.||+++|++. ..| ..+..+.+|+.|++
T Consensus 3 vd~s~~~l~~ip~-----~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASDEQLELIPE-----QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNL 75 (1081)
T ss_pred cccccccCcccch-----hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhccc
Confidence 4556555543322 2233333666666666654333333444444666666666664 344 34556666666666
Q ss_pred CCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCC
Q 043567 214 SSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEG 293 (911)
Q Consensus 214 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 293 (911)
+.|.|. ..|. ...++.+|++++|.+|.+.. .|..+..+++|++||+++|++. .+|..+..++.+..+..++|....
T Consensus 76 s~n~i~-~vp~-s~~~~~~l~~lnL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 76 SRNYIR-SVPS-SCSNMRNLQYLNLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred chhhHh-hCch-hhhhhhcchhheeccchhhc-CchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh
Confidence 666665 4553 35666666666666666554 5666666666666666666665 556666666666666666662111
Q ss_pred ccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCC-CCCChhhhccCCCCEEECCCCCCCCCCchhh
Q 043567 294 TFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL-NVIPPFLLHQFDLKYLDLSHNDLDGAFPTWA 372 (911)
Q Consensus 294 ~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 372 (911)
. ++.. .++.+++..+.+ ..++..+..+.. .|+|.+|.+. .. .
T Consensus 152 ~-----lg~~--------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---d 194 (1081)
T KOG0618|consen 152 R-----LGQT--------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---D 194 (1081)
T ss_pred h-----hccc--------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---h
Confidence 1 1111 144555555555 445555555544 5777777665 21 1
Q ss_pred hhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCC
Q 043567 373 LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKEL 452 (911)
Q Consensus 373 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 452 (911)
...+..|+.+....|++... ...-++++.|+.+.|.++...+. . ...+|++++++.|++++ +|++++.+.+|
T Consensus 195 ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~-p--~p~nl~~~dis~n~l~~-lp~wi~~~~nl 266 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH-P--VPLNLQYLDISHNNLSN-LPEWIGACANL 266 (1081)
T ss_pred hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc-c--ccccceeeecchhhhhc-chHHHHhcccc
Confidence 23566777777777766532 12345677777777777622222 1 14577778888887774 45777778888
Q ss_pred cEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccc-cCCC-CCcEEEC
Q 043567 453 RFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL-LKSK-KLVELRM 530 (911)
Q Consensus 453 ~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~-~L~~L~L 530 (911)
+.++..+|.++ .+|..++ ..++|+.|.+..|.+. .+|+....++.|++|+|..|++. .+|+.+ .... .|+.++.
T Consensus 267 e~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 267 EALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred eEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhh
Confidence 88888888775 6776654 5677777777777775 34555666778888888888877 344432 2222 3666677
Q ss_pred cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCccccc
Q 043567 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGP 609 (911)
Q Consensus 531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~ 609 (911)
+.|++....-..=...+.|+.|.+.+|.++...-+.+.+...|++|++++|++..++...+ ++..|++|+||+|+++ .
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-T 421 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-h
Confidence 7777662221111225667777777777777766677777777777777777776655555 7777777777777777 6
Q ss_pred ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCccccc-CChhhhcCCCCCeEEcCCCc
Q 043567 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ-IPNQICQLTGLGMMDLSHNK 677 (911)
Q Consensus 610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-ip~~l~~l~~L~~L~Ls~N~ 677 (911)
+|..+..+..|++|...+|++. .+| .+..++.|+.+|++.|+++.. +|+..- -++|++||+++|.
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 7777777777777777777777 566 677777777777777777643 333322 2677777777776
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-33 Score=299.22 Aligned_cols=283 Identities=23% Similarity=0.377 Sum_probs=233.2
Q ss_pred CCCCccEEEccCCcCC-cCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhccccc
Q 043567 399 KHDFLHHLDISSNNFT-GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSL 477 (911)
Q Consensus 399 ~~~~L~~L~ls~n~l~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L 477 (911)
-++..+-+|+++|.++ +.+|..+.+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-.+ ++.++.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhh
Confidence 3455667788888887 567888764 889999999888887 78999999999999999999886 33333 3578899
Q ss_pred ceeeccCcccccc-cCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccC
Q 043567 478 LWLGLSDNNFYGR-IFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK 556 (911)
Q Consensus 478 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 556 (911)
+.+++.+|++... +|+.+..+..|+.|||++|+++ ..|..+...+++-.|+||+|+|..+.-..+.+++.|-+|||++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 9999999988654 7788889999999999999998 7899999999999999999999844445677899999999999
Q ss_pred cccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCccc-ccccccccCCCCCCEEeCCCCcccccC
Q 043567 557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLS-GPIPIALFRSSNLLTLDLRDNGFSGVI 634 (911)
Q Consensus 557 n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~Ls~N~l~~~~ 634 (911)
|++. .+|+.+..+..|+.|++++|.+.-.--... .+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 9998 788889999999999999998764322222 5778888888887644 357888999999999999999998 78
Q ss_pred chhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccc
Q 043567 635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT 690 (911)
Q Consensus 635 p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 690 (911)
|+++-++.+|+.|+|++|+|+ .+....+...+|++|+||+|+++ .+|+++.+++
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~ 291 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT 291 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence 999999999999999999998 56666777788999999999998 7888877765
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.2e-33 Score=295.09 Aligned_cols=370 Identities=28% Similarity=0.371 Sum_probs=246.4
Q ss_pred CCCCCEEeCCCCCCCC-ccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCe
Q 043567 205 LKNLEALDLSSNFING-SLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEY 283 (911)
Q Consensus 205 l~~L~~L~Ls~n~l~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 283 (911)
++-.+-+|+++|.++| ..|. .+..+++++.|.|....+.. +|+.++.+.+|++|.+++|++. .+-..++.++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~-~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPH-DVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCch-hHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 3344556666666663 3333 35666666666666666554 5666666666666666666655 33344555555555
Q ss_pred eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCC
Q 043567 284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHND 363 (911)
Q Consensus 284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~ 363 (911)
+++..|++.. ..||..++.+..|+.||||+|+
T Consensus 83 v~~R~N~LKn------------------------------------------------sGiP~diF~l~dLt~lDLShNq 114 (1255)
T KOG0444|consen 83 VIVRDNNLKN------------------------------------------------SGIPTDIFRLKDLTILDLSHNQ 114 (1255)
T ss_pred Hhhhcccccc------------------------------------------------CCCCchhcccccceeeecchhh
Confidence 5555555431 2345555555556666666666
Q ss_pred CCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccc
Q 043567 364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443 (911)
Q Consensus 364 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p 443 (911)
+. +.|..+- ..+++-+|+|++| ++. .||..++.+++.|-.|||++|++. .+|
T Consensus 115 L~-EvP~~LE-~AKn~iVLNLS~N------------------------~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LP 166 (1255)
T KOG0444|consen 115 LR-EVPTNLE-YAKNSIVLNLSYN------------------------NIE-TIPNSLFINLTDLLFLDLSNNRLE-MLP 166 (1255)
T ss_pred hh-hcchhhh-hhcCcEEEEcccC------------------------ccc-cCCchHHHhhHhHhhhccccchhh-hcC
Confidence 55 4554332 3333333333333 332 556555555666666666666666 455
Q ss_pred hhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccc-cccCCCCCCCCCCCEEEccCccccccccccccCC
Q 043567 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFY-GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522 (911)
Q Consensus 444 ~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 522 (911)
+.+..+..|++|+|++|.+. ...-.-+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL 244 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence 55666666777777776553 111111224556667777665433 457888888899999999999988 789999999
Q ss_pred CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccc-ccCccc-ccccccEEE
Q 043567 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG-FMTTSF-NISSVEHLY 600 (911)
Q Consensus 523 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~-~~~~~~-~~~~L~~L~ 600 (911)
++|+.|+||+|+|+ .+....+...+|+.|+++.|+++ .+|..++++++|+.|.+.+|+++- -+|+.+ .+..|+.+.
T Consensus 245 ~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred hhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 99999999999988 45555666778999999999998 789999999999999999888763 245545 778888888
Q ss_pred cccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC
Q 043567 601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP 659 (911)
Q Consensus 601 Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip 659 (911)
.++|.+. .+|++++.|..|+.|.|+.|++- .+|+++.-++.|+.||++.|.-.-..|
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 8888876 77888888888888888888887 678888888888888888887653333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=5.1e-27 Score=239.10 Aligned_cols=420 Identities=19% Similarity=0.198 Sum_probs=273.0
Q ss_pred CCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccC-cccCCcccHHHHhc
Q 043567 395 LPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSK-NNFSGELSAALLTS 473 (911)
Q Consensus 395 ~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~g~i~~~~~~~ 473 (911)
+|..-.+.-..++|..|+++ .||+..+..+++|++|||++|+|+.+-|.+|.++++|..|-+.+ |+|+ .+|...|.+
T Consensus 61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g 138 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG 138 (498)
T ss_pred CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence 44445556778888999988 89999888899999999999999999999999999988887766 8887 899999999
Q ss_pred ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcc------------cCCc
Q 043567 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG------------HIPH 541 (911)
Q Consensus 474 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------~~p~ 541 (911)
+.+|+.|.+.-|++.-.....|..+++|..|.+.+|.+...-...+..+..++.+.+..|.+.. ..|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 9999999999999988888888899999999999999884444478888899999998887421 1222
Q ss_pred CccCcCCCcEEEccCcccccccchhhccC-CCCcEEEccCcccccccCc-cc-ccccccEEEcccCcccccccccccCCC
Q 043567 542 WMGNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQLFSVSENYLSGFMTT-SF-NISSVEHLYLQKNSLSGPIPIALFRSS 618 (911)
Q Consensus 542 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~ls~n~l~~~~~~-~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~ 618 (911)
.++.........+.+.++...-+..+... ..+..--.+.+...+.-|. .| .+++|+.|+|++|++++.-+.+|.+..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 22222233333333333332222222111 1111111222333333333 34 788888888888888888788888888
Q ss_pred CCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCC-cccccccccccCCc
Q 043567 619 NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP-SCFTNITLWSVGNL 697 (911)
Q Consensus 619 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~~~~~~~ 697 (911)
.+++|.|..|++...-...|.++..|+.|+|.+|+|+-.-|..|..+.+|.+|.|-.|++.-.-- .+++.+-. .....
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr-~~~~~ 377 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR-KKSVV 377 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh-hCCCC
Confidence 88888888888876666678888888888888888888888888888888888888887651110 01111000 00011
Q ss_pred cccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEE-EcccCcccc
Q 043567 698 DRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGL-DLSCNKLTG 776 (911)
Q Consensus 698 ~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-dLs~N~l~g 776 (911)
.+.+.....++..+++..+.... +.+....+...... .+.....+.+.+. ..|++.+.
T Consensus 378 ~~~~Cq~p~~~~~~~~~dv~~~~----------------~~c~~~ee~~~~~s----~~cP~~c~c~~tVvRcSnk~lk- 436 (498)
T KOG4237|consen 378 GNPRCQSPGFVRQIPISDVAFGD----------------FRCGGPEELGCLTS----SPCPPPCTCLDTVVRCSNKLLK- 436 (498)
T ss_pred CCCCCCCCchhccccchhccccc----------------cccCCccccCCCCC----CCCCCCcchhhhhHhhcccchh-
Confidence 22222222233333332222111 11100000000000 0000112233332 33444333
Q ss_pred cCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCC
Q 043567 777 EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN 844 (911)
Q Consensus 777 ~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 844 (911)
.+|..|. ...++|++.+|.++ .+|.+ .+++| .+|+|+|+++-.--..|++++.|.+|-+|||
T Consensus 437 ~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 437 LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 6665443 45677899999997 67776 67788 8999999988777778889999999999987
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=2.4e-26 Score=234.19 Aligned_cols=399 Identities=20% Similarity=0.238 Sum_probs=284.0
Q ss_pred EEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccC-
Q 043567 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSD- 484 (911)
Q Consensus 406 L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~- 484 (911)
.+-++-.++ ++|..+ .+.-++++|..|+|+...+.+|..+++|+.|||++|+|+ .|....|.++++|..|.+.+
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344455566 788876 567899999999999888899999999999999999998 78778889999998888777
Q ss_pred cccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccc----
Q 043567 485 NNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFE---- 560 (911)
Q Consensus 485 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---- 560 (911)
|+|+......|+++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+...--..+..+..++.+.+..|.+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 9999888889999999999999999999888889999999999999999998433348889999999999988743
Q ss_pred --------cccchhhccCCCCcEEEccCcccccccCccccc--ccccEEEcccCcccccccc-cccCCCCCCEEeCCCCc
Q 043567 561 --------GNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNI--SSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNG 629 (911)
Q Consensus 561 --------~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~ 629 (911)
...|..++..+...-..+.++++....+.-|.+ .++..-..+.+...+.-|. .|..+++|++|+|++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 222333333333333334444444444433422 2332223344444445553 68889999999999999
Q ss_pred ccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhh
Q 043567 630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVE 709 (911)
Q Consensus 630 l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~ 709 (911)
++++-+.+|..+..+++|.|..|++...-...|.++..|++|+|.+|+++-..|..|..+..+...++-.+++.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~------ 359 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN------ 359 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc------
Confidence 99999999999999999999999998666778889999999999999999999999988876655544443322
Q ss_pred hccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc---ccCCccccC--
Q 043567 710 RLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT---GEIPSEIGE-- 784 (911)
Q Consensus 710 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~---g~ip~~i~~-- 784 (911)
++..-.|...|+.......... . +....++.++++.+.+. -.-|++.+-
T Consensus 360 ---CnC~l~wl~~Wlr~~~~~~~~~-C----------------------q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~ 413 (498)
T KOG4237|consen 360 ---CNCRLAWLGEWLRKKSVVGNPR-C----------------------QSPGFVRQIPISDVAFGDFRCGGPEELGCLT 413 (498)
T ss_pred ---CccchHHHHHHHhhCCCCCCCC-C----------------------CCCchhccccchhccccccccCCccccCCCC
Confidence 2222223334443332111111 1 11223444555544332 123333322
Q ss_pred -------CCCC-CEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567 785 -------LQEI-PVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 785 -------l~~L-~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
++-+ ++..-|++.+. .+|..+.. .-..|++.+|.++ .+|.+ .+..| .+|+|+|+++-
T Consensus 414 s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~--d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 414 SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPV--DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred CCCCCCCcchhhhhHhhcccchh-hcCCCCCc--hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 3334 34555666655 67766553 4568899999999 78877 67778 89999999875
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.9e-22 Score=253.81 Aligned_cols=308 Identities=20% Similarity=0.200 Sum_probs=170.6
Q ss_pred CCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEc
Q 043567 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL 506 (911)
Q Consensus 427 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 506 (911)
+|+.|.+.++.+. .+|..+ ...+|++|++.+|++. .++..+ ..+++|+.++++++.....+| .+..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 3444444444333 233333 2344444444444443 233221 234444444444433322332 2444455555555
Q ss_pred cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccc
Q 043567 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGF 586 (911)
Q Consensus 507 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~ 586 (911)
++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+..
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~- 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE- 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-
Confidence 5554444455555555555555555544333444433 4555555555555444344422 2345555555555432
Q ss_pred cCcccccccccEEEcccCcc-------cccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC
Q 043567 587 MTTSFNISSVEHLYLQKNSL-------SGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP 659 (911)
Q Consensus 587 ~~~~~~~~~L~~L~Ls~n~l-------~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip 659 (911)
+|..+.+++|++|++.++.. ....|......++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 23333445555555544321 11112222234567777777777766777777777777777777776555677
Q ss_pred hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccc
Q 043567 660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739 (911)
Q Consensus 660 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 739 (911)
..+ ++++|+.|++++|.....+|..
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------------------ 844 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------------------ 844 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc------------------------------------------------------
Confidence 665 6777777777776543333321
Q ss_pred ccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccC
Q 043567 740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819 (911)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 819 (911)
.++++.|+|++|.++ .+|..++.+++|+.|+|++|+--..+|..+..+++|+.+++++
T Consensus 845 ---------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 845 ---------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred ---------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 125667888888887 7888888888999999988443345787888888888888888
Q ss_pred Cc
Q 043567 820 NR 821 (911)
Q Consensus 820 N~ 821 (911)
|.
T Consensus 903 C~ 904 (1153)
T PLN03210 903 CG 904 (1153)
T ss_pred Cc
Confidence 74
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.8e-22 Score=252.23 Aligned_cols=341 Identities=19% Similarity=0.218 Sum_probs=258.6
Q ss_pred ChhHHHhccCCcEEEcccCc------cccccchhhhcCC-CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccc
Q 043567 418 PQDMGIILQKLLYMDMSNNH------FEGNIASSIAEMK-ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR 490 (911)
Q Consensus 418 p~~~~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~ 490 (911)
....+..+++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 34444558888888886653 2334666666654 6899999888886 777764 5678889999888876 4
Q ss_pred cCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccC
Q 043567 491 IFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNH 570 (911)
Q Consensus 491 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~ 570 (911)
++..+..+++|+.|+|+++...+.+|. +..+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 566677888899999988765556664 7778889999998887767888888888999999998886666777765 68
Q ss_pred CCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCccc-------ccCchhhhcCCC
Q 043567 571 RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFS-------GVIPHQINECSN 643 (911)
Q Consensus 571 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~-------~~~p~~l~~l~~ 643 (911)
++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|++.++... ...|......++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 88889999888766555543 457888888888876 567655 5678888888774321 111222334568
Q ss_pred ccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccc
Q 043567 644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSM 723 (911)
Q Consensus 644 L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 723 (911)
|+.|++++|...+.+|.+++++++|+.|++++|+..+.+|..+
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------- 822 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------- 822 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence 8899999988888889888899999999998886555555432
Q ss_pred cccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccc
Q 043567 724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIP 803 (911)
Q Consensus 724 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip 803 (911)
.+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|
T Consensus 823 ------------------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 823 ------------------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVP 862 (1153)
T ss_pred ------------------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cCh
Confidence 1346788999998766677754 468999999999998 789
Q ss_pred ccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCc
Q 043567 804 ESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNN 845 (911)
Q Consensus 804 ~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 845 (911)
.+++.+++|+.|++++|+--..+|..+..++.|+.++++++.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999999999999854434688889999999999999874
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=9e-22 Score=229.13 Aligned_cols=264 Identities=23% Similarity=0.261 Sum_probs=153.2
Q ss_pred CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEE
Q 043567 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR 529 (911)
Q Consensus 450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 529 (911)
..-..|+++.|.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-------------------------LP~---lp~~Lk~Ld 248 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-------------------------LPA---LPPELRTLE 248 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-------------------------CCC---CCCCCcEEE
Confidence 34556677777666 5665432 245555555555443 222 124445555
Q ss_pred CcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccc
Q 043567 530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP 609 (911)
Q Consensus 530 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~ 609 (911)
+++|+++ .+|.. .++|+.|++++|.++ .+|... .+|+.|++++|+++..+. ..++|+.|++++|++++
T Consensus 249 Ls~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 249 VSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred ecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEECcCCccccccc---cccccceeECCCCcccc-
Confidence 5555444 23321 234455555555544 233211 334455555555543321 13456666666666653
Q ss_pred ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccc
Q 043567 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI 689 (911)
Q Consensus 610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l 689 (911)
+|... .+|+.|++++|++++ +|.. ..+|++|+|++|+++ .+|.. ..+|+.|++++|++++ +|...
T Consensus 317 Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l~--- 381 (788)
T PRK15387 317 LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPALP--- 381 (788)
T ss_pred CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccccc---
Confidence 33321 346666777777763 4532 136777777777777 34532 2456667777777662 44211
Q ss_pred cccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEc
Q 043567 690 TLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDL 769 (911)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 769 (911)
..|..|++
T Consensus 382 ------------------------------------------------------------------------~~L~~LdL 389 (788)
T PRK15387 382 ------------------------------------------------------------------------SGLKELIV 389 (788)
T ss_pred ------------------------------------------------------------------------cccceEEe
Confidence 13566888
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567 770 SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849 (911)
Q Consensus 770 s~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 849 (911)
++|+|+ .+|.. .++|+.|++++|++++ +|... .+|+.|++++|+|+ .+|..+.+++.|++++|++|+|+|.
T Consensus 390 s~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 390 SGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 888887 46653 3568888888888874 67543 35678888888887 6888888888888888888888888
Q ss_pred CCCC
Q 043567 850 IPDK 853 (911)
Q Consensus 850 iP~~ 853 (911)
+|+.
T Consensus 461 ~~~~ 464 (788)
T PRK15387 461 TLQA 464 (788)
T ss_pred HHHH
Confidence 7753
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.2e-21 Score=228.13 Aligned_cols=268 Identities=24% Similarity=0.287 Sum_probs=169.5
Q ss_pred cCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEE
Q 043567 426 QKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY 505 (911)
Q Consensus 426 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 505 (911)
..-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|. ..++|+.|++++|+++.. |.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceee
Confidence 34678999999998 6777765 48999999999998 5764 245666666666666532 321 24556666
Q ss_pred ccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccc
Q 043567 506 LENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG 585 (911)
Q Consensus 506 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~ 585 (911)
+++|.++ .+|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|..
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l------------------- 320 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL------------------- 320 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC-------------------
Confidence 6666655 23321 234555555555555 23321 2345555555555442 2221
Q ss_pred ccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcC
Q 043567 586 FMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL 665 (911)
Q Consensus 586 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l 665 (911)
...|+.|++++|++++ +|.. ..+|+.|+|++|+++ .+|.. ..+|+.|++++|+++ .+|.. .
T Consensus 321 -------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~ 381 (788)
T PRK15387 321 -------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---P 381 (788)
T ss_pred -------cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---c
Confidence 1235555666666652 4431 136777777777777 34543 246777778888777 46643 3
Q ss_pred CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567 666 TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745 (911)
Q Consensus 666 ~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 745 (911)
.+|+.|++++|++++ +|...
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l~----------------------------------------------------------- 401 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVLP----------------------------------------------------------- 401 (788)
T ss_pred cccceEEecCCcccC-CCCcc-----------------------------------------------------------
Confidence 467788888888763 44211
Q ss_pred eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825 (911)
Q Consensus 746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ 825 (911)
+.|+.||+|+|+++ .+|.. ..+|+.|++++|+|+ .+|..++++++|+.|||++|+|+|.
T Consensus 402 ----------------s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 402 ----------------SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ----------------cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 14566888888887 46754 345777888888887 6788888888888888888888888
Q ss_pred CCCCCCCC
Q 043567 826 IPPKLTEL 833 (911)
Q Consensus 826 ip~~l~~l 833 (911)
+|..+..+
T Consensus 461 ~~~~L~~l 468 (788)
T PRK15387 461 TLQALREI 468 (788)
T ss_pred HHHHHHHH
Confidence 77766443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1e-19 Score=213.73 Aligned_cols=78 Identities=29% Similarity=0.452 Sum_probs=42.7
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCC----CCCCCCCe
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKL----TELNFLSN 838 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l----~~l~~L~~ 838 (911)
+|+.|++++|+|+ .+|..+. +.|+.|+|++|+|+ .+|..+.. .|+.||+++|+|+ .+|..+ ..++.+.+
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~--sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA--ALQIMQASRNNLV-RLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH--HHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence 3455666666665 4554442 45666666666665 34544432 4666666666665 344433 23355566
Q ss_pred EeccCCcCe
Q 043567 839 FNVSYNNLS 847 (911)
Q Consensus 839 L~ls~N~l~ 847 (911)
+++.+|+++
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.5e-19 Score=212.45 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHhhhcCC
Q 043567 33 GYKACLKTERAALSEIKSFFI 53 (911)
Q Consensus 33 ~~~~c~~~~~~all~~k~~~~ 53 (911)
...+-..+|.+.+++..+.+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~ 76 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLA 76 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 344455678888988888884
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.1e-19 Score=196.85 Aligned_cols=181 Identities=23% Similarity=0.203 Sum_probs=87.5
Q ss_pred eeeccCcccccc-cCCCCCCCCCCCEEEccCcccccc----ccccccCCCCCcEEECcCCcCcc------cCCcCccCcC
Q 043567 479 WLGLSDNNFYGR-IFPGYMNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSG------HIPHWMGNLS 547 (911)
Q Consensus 479 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~ 547 (911)
.|+|..+.+.+. ....+..+.+|+.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 355555655522 223334455566666666666432 33344455556666666655541 1122333344
Q ss_pred CCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccc----cccccccCC-CCCCE
Q 043567 548 YLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG----PIPIALFRS-SNLLT 622 (911)
Q Consensus 548 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~~-~~L~~ 622 (911)
+|+.|++++|.+.+..+..+..+.+ . ++|++|++++|++++ .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 4444444444444333333322222 1 225555555555442 122333444 56666
Q ss_pred EeCCCCccccc----CchhhhcCCCccEEEccCCccccc----CChhhhcCCCCCeEEcCCCcCC
Q 043567 623 LDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQ----IPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 623 L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
|++++|.+++. ++..+..++.|++|++++|.+++. ++..+...++|+.|++++|.++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 66666666532 233444555666666666666532 2333444456666666666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=3.1e-18 Score=187.68 Aligned_cols=252 Identities=24% Similarity=0.244 Sum_probs=124.7
Q ss_pred ccCCcEEEcccCccccc----cchhhhcCCCCcEEeccCcccCCccc------HHHHhcccccceeeccCcccccccCCC
Q 043567 425 LQKLLYMDMSNNHFEGN----IASSIAEMKELRFLDLSKNNFSGELS------AALLTSCFSLLWLGLSDNNFYGRIFPG 494 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~g~i~------~~~~~~~~~L~~L~L~~n~l~~~~~~~ 494 (911)
+.+|++++++++.++.. ++..+...+++++++++.+.+.+ .+ ...+..+++|+.|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 44455555555554321 33334444455555555554431 01 111223445555555555444333322
Q ss_pred CCCCC---CCCEEEccCccccc----cccccccCC-CCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccccc
Q 043567 495 YMNLT---QLQYLYLENNKFSG----KIEEGLLKS-KKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFEGN 562 (911)
Q Consensus 495 ~~~l~---~L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 562 (911)
+..+. +|++|++++|++++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 22222 36666666665552 122233344 5666666666666532 223344455666666666666532
Q ss_pred ----cchhhccCCCCcEEEccCcccccccCc----cc-ccccccEEEcccCcccccccccccC-----CCCCCEEeCCCC
Q 043567 563 ----IPVQLLNHRRLQLFSVSENYLSGFMTT----SF-NISSVEHLYLQKNSLSGPIPIALFR-----SSNLLTLDLRDN 628 (911)
Q Consensus 563 ----~p~~l~~~~~L~~L~ls~n~l~~~~~~----~~-~~~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~Ls~N 628 (911)
++..+..+++|+.|++++|.+.+.... .+ .+++|++|++++|.+++.....+.. .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 233344445666666666665533221 12 3556666666666665422222211 256777777777
Q ss_pred ccc----ccCchhhhcCCCccEEEccCCccccc----CChhhhcC-CCCCeEEcCCCc
Q 043567 629 GFS----GVIPHQINECSNLRFLLLRGNNLEGQ----IPNQICQL-TGLGMMDLSHNK 677 (911)
Q Consensus 629 ~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~ 677 (911)
.++ ..+...+..+++|+++++++|.++.. +...+... +.|+.+++.+|+
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 665 12334455556677777777777643 33333333 566666666665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1e-18 Score=158.50 Aligned_cols=187 Identities=27% Similarity=0.488 Sum_probs=160.3
Q ss_pred cCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCC
Q 043567 587 MTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLT 666 (911)
Q Consensus 587 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~ 666 (911)
+|..|+++..++|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. .+|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 455567888899999999998 78889999999999999999998 78999999999999999999998 8999999999
Q ss_pred CCCeEEcCCCcCCC-CCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567 667 GLGMMDLSHNKFNG-SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745 (911)
Q Consensus 667 ~L~~L~Ls~N~l~g-~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 745 (911)
.|++|||.+|+++. .+|..|.-
T Consensus 103 ~levldltynnl~e~~lpgnff~--------------------------------------------------------- 125 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------- 125 (264)
T ss_pred hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence 99999999999873 23433322
Q ss_pred eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825 (911)
Q Consensus 746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ 825 (911)
++.|..|+|+.|.|. .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|.+.+|+++ .
T Consensus 126 ---------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 126 ---------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ---------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 234566889999998 89999999999999999999997 79999999999999999999999 7
Q ss_pred CCCCCCCCCCC---CeEeccCCcCeecCC
Q 043567 826 IPPKLTELNFL---SNFNVSYNNLSGLIP 851 (911)
Q Consensus 826 ip~~l~~l~~L---~~L~ls~N~l~g~iP 851 (911)
+|++++++.-+ +++.+.+|++--+|-
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 88888877643 456677888876664
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.4e-18 Score=156.12 Aligned_cols=182 Identities=25% Similarity=0.437 Sum_probs=139.7
Q ss_pred CCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCc
Q 043567 495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ 574 (911)
Q Consensus 495 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 574 (911)
+.++...+.|.|++|+++ .+|..++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445677888888999988 67778888899999999999988 77888899999999999988887 7889999999999
Q ss_pred EEEccCccccc-ccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCC
Q 043567 575 LFSVSENYLSG-FMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN 652 (911)
Q Consensus 575 ~L~ls~n~l~~-~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 652 (911)
+||+.+|++.. ..|..| .+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999888874 345544 7777777888888776 67777788888888888887777 67777888888888888888
Q ss_pred cccccCChhhhcCCCC---CeEEcCCCcCCCCC
Q 043567 653 NLEGQIPNQICQLTGL---GMMDLSHNKFNGSI 682 (911)
Q Consensus 653 ~l~~~ip~~l~~l~~L---~~L~Ls~N~l~g~i 682 (911)
+++ .+|.+++++.-+ +++.+.+|++...|
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 877 666666655322 34455555554333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=5.3e-14 Score=165.51 Aligned_cols=118 Identities=33% Similarity=0.570 Sum_probs=106.3
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
.++.|+|++|.++|.+|..|+.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+++++.|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCeecCCCC--CCCCccCccccCCCCCCCCCccCCCCC
Q 043567 843 YNNLSGLIPDK--GQFATFDESSYRGNLHLCGPTINKSCN 880 (911)
Q Consensus 843 ~N~l~g~iP~~--~~~~~~~~~~~~gn~~lcg~~l~~~c~ 880 (911)
+|+++|.+|.. ..+.......+.||+++||.|..+.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999975 222333456689999999987656674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.44 E-value=5.6e-13 Score=156.93 Aligned_cols=155 Identities=26% Similarity=0.396 Sum_probs=98.8
Q ss_pred CCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCC----ccccceeecCCCCcEEEEecCCCCcccccccc
Q 043567 35 KACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDC----CNWKGVRCNATTGRVIQLLLNDTSKFIEYSKN 110 (911)
Q Consensus 35 ~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~----C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~ 110 (911)
..+.++|.+||+++|+++. ++. ..+|.. ..| |.|.||.|......
T Consensus 367 ~~t~~~~~~aL~~~k~~~~------~~~--~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~------------------ 415 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG------LPL--RFGWNG-----DPCVPQQHPWSGADCQFDSTK------------------ 415 (623)
T ss_pred cccCchHHHHHHHHHHhcC------Ccc--cCCCCC-----CCCCCcccccccceeeccCCC------------------
Confidence 3466789999999999983 232 247963 244 37999999531100
Q ss_pred cccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCC
Q 043567 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190 (911)
Q Consensus 111 ~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 190 (911)
+ ...++.|+|++|.+.|.++ ..++.+++|++|+|++|.+.+.+|..++.+++|++|+|++
T Consensus 416 ---~-------------~~~v~~L~L~~n~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~ 475 (623)
T PLN03150 416 ---G-------------KWFIDGLGLDNQGLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475 (623)
T ss_pred ---C-------------ceEEEEEECCCCCccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence 0 0123455666666666666 5667777777777777777777777777777777777777
Q ss_pred cccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccC-CCCCCEEeccCCc
Q 043567 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICE-LKNLFVLNLEKNN 242 (911)
Q Consensus 191 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~-l~~L~~L~Ls~n~ 242 (911)
|+++|.+| ..++++++|++|+|++|.++|.+|.. +.. ..++..+++.+|.
T Consensus 476 N~lsg~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 476 NSFNGSIP-ESLGQLTSLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCCCc-hHHhcCCCCCEEECcCCcccccCChH-HhhccccCceEEecCCc
Confidence 77776666 45666666666666666666666654 332 2344555555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=6.9e-15 Score=157.71 Aligned_cols=176 Identities=29% Similarity=0.471 Sum_probs=144.4
Q ss_pred cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567 593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD 672 (911)
Q Consensus 593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~ 672 (911)
+.--...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|.+|||+.|+++ .+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456778888887 78888888888888888888887 78888888999999999999988 7888888875 88888
Q ss_pred cCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccc
Q 043567 673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNR 752 (911)
Q Consensus 673 Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 752 (911)
+++|+++ .+|..++.
T Consensus 150 ~sNNkl~-~lp~~ig~---------------------------------------------------------------- 164 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL---------------------------------------------------------------- 164 (722)
T ss_pred EecCccc-cCCccccc----------------------------------------------------------------
Confidence 8888886 56665542
Q ss_pred eeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCC
Q 043567 753 YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTE 832 (911)
Q Consensus 753 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~ 832 (911)
...|..||.|.|++. .+|..++++.+|+.|++.+|++. ..|+.+..|+ |..||+|+|+++ .||..|.+
T Consensus 165 --------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~ 232 (722)
T KOG0532|consen 165 --------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRK 232 (722)
T ss_pred --------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhh
Confidence 125666888999888 78888999999999999999987 6777788775 888999999998 78999999
Q ss_pred CCCCCeEeccCCcCeec
Q 043567 833 LNFLSNFNVSYNNLSGL 849 (911)
Q Consensus 833 l~~L~~L~ls~N~l~g~ 849 (911)
|+.|++|-|.+|+|..+
T Consensus 233 m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhheeeeeccCCCCCC
Confidence 99999999999999865
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.1e-13 Score=148.50 Aligned_cols=194 Identities=25% Similarity=0.424 Sum_probs=140.3
Q ss_pred CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcc
Q 043567 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQ 602 (911)
Q Consensus 523 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls 602 (911)
..-...|++.|++. .+|..+..+..|+.+.+++|.+. .+|..++++..|++++++.|+++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS------------------ 134 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS------------------ 134 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh------------------
Confidence 34456677777777 67777777777777777777776 66777776666666666665554
Q ss_pred cCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCC
Q 043567 603 KNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSI 682 (911)
Q Consensus 603 ~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~i 682 (911)
.+|..++.++ |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+
T Consensus 135 ------~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l 204 (722)
T KOG0532|consen 135 ------HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL 204 (722)
T ss_pred ------cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence 4455555555 777888888877 67888887788888888888887 67888888888888888888876 45
Q ss_pred CcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCc
Q 043567 683 PSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD 762 (911)
Q Consensus 683 p~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 762 (911)
|..+..|
T Consensus 205 p~El~~L------------------------------------------------------------------------- 211 (722)
T KOG0532|consen 205 PEELCSL------------------------------------------------------------------------- 211 (722)
T ss_pred CHHHhCC-------------------------------------------------------------------------
Confidence 5544433
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccc---cCCCCEEeccCCc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSN---LKMIESLDLSHNR 821 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~---l~~L~~LdLs~N~ 821 (911)
.|..||+|+|+++ .||-+|.+|+.|++|-|.+|.++ ..|..+.- ..=-++|+..-++
T Consensus 212 pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 2566999999998 89999999999999999999997 55655542 2334566666664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=5.7e-12 Score=142.13 Aligned_cols=123 Identities=28% Similarity=0.375 Sum_probs=59.1
Q ss_pred EEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccc-cccEEEcccCcccccccccccCCCCCCEEeCCCCc
Q 043567 551 VLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNIS-SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNG 629 (911)
Q Consensus 551 ~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~ 629 (911)
.+++..|.+... +..+...+.++.+++.+|.++...+...... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 455555555322 2223334555555555555555444433332 5555555555554 333444555555555555555
Q ss_pred ccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567 630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK 677 (911)
Q Consensus 630 l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 677 (911)
++ .+|...+..+.|+.|++++|+++ .+|..+..+..|+++++++|+
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 55 33443334455555555555554 444444344445555555543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=3.3e-11 Score=135.97 Aligned_cols=102 Identities=28% Similarity=0.424 Sum_probs=68.1
Q ss_pred EEEccCcccccccCcccccccccEEEcccCcccccccccccCCC-CCCEEeCCCCcccccCchhhhcCCCccEEEccCCc
Q 043567 575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSS-NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653 (911)
Q Consensus 575 ~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 653 (911)
.++...|.+...+......+.++.+++.+|.++ .+|....... +|+.|++++|++. .+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 466666666544444445566777777777776 5555555553 7777777777776 555667777777777777777
Q ss_pred ccccCChhhhcCCCCCeEEcCCCcCC
Q 043567 654 LEGQIPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 654 l~~~ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
++ .+|...+.++.|+.|++++|+++
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc
Confidence 76 56655556777777777777765
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.5e-11 Score=123.59 Aligned_cols=233 Identities=23% Similarity=0.207 Sum_probs=124.3
Q ss_pred EeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccch-hhhcCCCCCCEEEcCCcccCCccC-hhhhcCCCCCCEE
Q 043567 134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIF-LYLNALTSLTTLILRENNIQGSRT-KQGLSKLKNLEAL 211 (911)
Q Consensus 134 L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L 211 (911)
+.+++-.+....-+++...-.++++|+...|.+..+..... .....|++++.||||+|-+..-.+ ......+++|+.|
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL 177 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence 44444444444333333445567777777777776653221 345567777777777776653222 1334567777777
Q ss_pred eCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCc
Q 043567 212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290 (911)
Q Consensus 212 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 290 (911)
+|+.|++.-......-..++.|+.|.|+.|.++.. +-..+..+++|+.|+|..|.....-......+..|+.|||++|+
T Consensus 178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 77777765333322223455666666666666532 11223345566666666664222222233344555566666555
Q ss_pred CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCC--Chh-----hhccCCCCEEECCCCC
Q 043567 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI--PPF-----LLHQFDLKYLDLSHND 363 (911)
Q Consensus 291 l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~-----l~~~~~L~~L~Ls~n~ 363 (911)
+. ..........++.|+.|+++.+.+.++ |+. ...+++|++|++..|+
T Consensus 258 li-------------------------~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 258 LI-------------------------DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cc-------------------------ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 54 332223333444455555555555332 222 3456678888888888
Q ss_pred CCCCCch-hhhhcCCcccEEEccCCccccc
Q 043567 364 LDGAFPT-WALQNNTKLEVLLLTNNSFTGN 392 (911)
Q Consensus 364 l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~ 392 (911)
+. ..+. .-...+++|+.|.+..|.+...
T Consensus 313 I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 313 IR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cc-cccccchhhccchhhhhhccccccccc
Confidence 74 2221 1122456677777777777643
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=7.9e-11 Score=120.28 Aligned_cols=243 Identities=23% Similarity=0.261 Sum_probs=121.8
Q ss_pred ccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCC---CCccchh-------hhcCCCCCCEEEcCCcccC
Q 043567 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY---FDDSIFL-------YLNALTSLTTLILRENNIQ 194 (911)
Q Consensus 125 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~l~~L~~L~Ls~n~l~ 194 (911)
..++..++.++||+|.|...-...+...+.+.+.|+..++|.-. ....+|. .+..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 45566777777777777554333333556666777777776532 1222332 3345567777777777664
Q ss_pred CccC---hhhhcCCCCCCEEeCCCCCCCCccCcc-------------cccCCCCCCEEeccCCcCCCC----CCcccCCC
Q 043567 195 GSRT---KQGLSKLKNLEALDLSSNFINGSLESQ-------------GICELKNLFVLNLEKNNIEDH----LPNCLNNM 254 (911)
Q Consensus 195 ~~~~---~~~l~~l~~L~~L~Ls~n~l~~~i~~~-------------~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l 254 (911)
-..+ .+.+..+..|++|.|.+|.+. ..... ..+.-+.|+++...+|++... +...|...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 2222 123455666777777766654 21111 123334555555555555432 11223344
Q ss_pred CCCcEEEccCCcCCcc----CcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCC
Q 043567 255 TRLKVLDISFNQLSGS----FPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQ 330 (911)
Q Consensus 255 ~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 330 (911)
+.|+.+.++.|.+... +...+..+++|++|||.+|.++-.-. ......+...++
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----------------------~~LakaL~s~~~ 242 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----------------------VALAKALSSWPH 242 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----------------------HHHHHHhcccch
Confidence 5555555555554321 12234445555555555555431110 001112333445
Q ss_pred ceEEECCCCCCCC-----CChhh-hccCCCCEEECCCCCCCCC---CchhhhhcCCcccEEEccCCccc
Q 043567 331 LKVLRLPNCSLNV-----IPPFL-LHQFDLKYLDLSHNDLDGA---FPTWALQNNTKLEVLLLTNNSFT 390 (911)
Q Consensus 331 L~~L~L~~n~l~~-----ip~~l-~~~~~L~~L~Ls~n~l~~~---~p~~~~~~l~~L~~L~L~~n~l~ 390 (911)
|+++++.+|.+.. +-..+ ...++|+.|.+.+|.++.. .........+.|+.|+|++|++.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 5566666665521 11111 1245677777777776522 11112224667777777777773
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.3e-10 Score=121.89 Aligned_cols=217 Identities=21% Similarity=0.188 Sum_probs=150.6
Q ss_pred cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCc--cchhhhcCCCCCCEEEcCCcccCCccChhhhc
Q 043567 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDD--SIFLYLNALTSLTTLILRENNIQGSRTKQGLS 203 (911)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 203 (911)
+.+++|+...|.++.+...... .....|++++.||||+|-|.. .+-.....+++|+.|+|+.|++.-......-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 3578899999999887654322 356789999999999998864 34455678999999999999986443333334
Q ss_pred CCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccC-cccccCCCCCC
Q 043567 204 KLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSF-PSIISNLTSLE 282 (911)
Q Consensus 204 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~ 282 (911)
.+++|+.|.|+.|.++-.--......+|+|+.|+|..|...........-++.|+.|||++|++.... -...+.++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 67899999999999982211223567899999999999643333344556788999999999977321 24578899999
Q ss_pred eeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCC--hhhhccCCCCEEECC
Q 043567 283 YLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIP--PFLLHQFDLKYLDLS 360 (911)
Q Consensus 283 ~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip--~~l~~~~~L~~L~Ls 360 (911)
.|+++.+.+.. +..... ..+ +....+++|+.|++..|++...+ ..+..+.+|+.|.+.
T Consensus 275 ~Lnls~tgi~s-i~~~d~---~s~----------------~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 275 QLNLSSTGIAS-IAEPDV---ESL----------------DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred hhhccccCcch-hcCCCc---cch----------------hhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 99999988762 210000 000 01223456677777777774443 355666677777777
Q ss_pred CCCCC
Q 043567 361 HNDLD 365 (911)
Q Consensus 361 ~n~l~ 365 (911)
.|.++
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 77775
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=4.3e-10 Score=108.37 Aligned_cols=127 Identities=32% Similarity=0.314 Sum_probs=37.4
Q ss_pred CCCCCcEEeCCCCCCCccchhhhc-CCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCC
Q 043567 155 SLKRLKILNLGYNYFDDSIFLYLN-ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNL 233 (911)
Q Consensus 155 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L 233 (911)
+..++++|+|++|.|+.. ..++ .+.+|+.|+|++|.|+ .+. .+..+++|++|++++|+|+ .+.......+++|
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 333445555555554421 1232 3455555555555554 222 3555666666666666665 3432212346666
Q ss_pred CEEeccCCcCCCCC-CcccCCCCCCcEEEccCCcCCccC---cccccCCCCCCeeecc
Q 043567 234 FVLNLEKNNIEDHL-PNCLNNMTRLKVLDISFNQLSGSF---PSIISNLTSLEYLALF 287 (911)
Q Consensus 234 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~L~ 287 (911)
++|++++|+|.... -..+..+++|+.|++.+|.++..- ...+..+++|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 66666666665421 133556667777777777665321 1134567777777653
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.8e-10 Score=114.48 Aligned_cols=87 Identities=25% Similarity=0.271 Sum_probs=63.7
Q ss_pred ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc-CCCCCCCCCCCCeEe
Q 043567 762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ-IPPKLTELNFLSNFN 840 (911)
Q Consensus 762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~ 840 (911)
++|+.||||+|.++ .+-.+=..|-+.+.|+|+.|.+. --+.+++|-+|+.||++.|+|... --..+++|+.|+.+.
T Consensus 329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 46677888888777 44444455667788888888874 234577788888999999988632 124678899999999
Q ss_pred ccCCcCeecCC
Q 043567 841 VSYNNLSGLIP 851 (911)
Q Consensus 841 ls~N~l~g~iP 851 (911)
|-+|++.+.+-
T Consensus 406 L~~NPl~~~vd 416 (490)
T KOG1259|consen 406 LTGNPLAGSVD 416 (490)
T ss_pred hcCCCccccch
Confidence 99999988653
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=9.6e-10 Score=105.98 Aligned_cols=126 Identities=34% Similarity=0.365 Sum_probs=38.8
Q ss_pred cCCCCCCEEEcCCcccCCccChhhhc-CCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCccc-CCCC
Q 043567 178 NALTSLTTLILRENNIQGSRTKQGLS-KLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCL-NNMT 255 (911)
Q Consensus 178 ~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~ 255 (911)
.+..++++|+|++|.|+ .+. .++ .+.+|+.||+++|.|+ .++ .+..+++|++|++++|.++.. .+.+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 34456777777777775 222 344 4667777777777776 444 266677777777777777763 3233 3467
Q ss_pred CCcEEEccCCcCCccC-cccccCCCCCCeeeccCCcCCCccC--hhhhcccccccEEE
Q 043567 256 RLKVLDISFNQLSGSF-PSIISNLTSLEYLALFDNNFEGTFP--LSSLANHSKLEVLL 310 (911)
Q Consensus 256 ~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p--~~~l~~l~~L~~L~ 310 (911)
+|+.|++++|++...- -..++.+++|++|++.+|.++..-- ...+..+|+|+.||
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 7777777777765421 2345566777777777776653211 12344555555554
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=5e-10 Score=114.52 Aligned_cols=135 Identities=23% Similarity=0.287 Sum_probs=71.0
Q ss_pred CCCCCEEEccCcccccc----ccccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccccc----cch
Q 043567 498 LTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFEGN----IPV 565 (911)
Q Consensus 498 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~ 565 (911)
-+.|+.+..++|++... +...|...+.|+.+.++.|.|... +...+.++++|+.|||.+|.|+.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 34566666666655422 122334445555565555554311 112344455555555555544422 112
Q ss_pred hhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccccccccc-----CCCCCCEEeCCCCcccc----cCch
Q 043567 566 QLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALF-----RSSNLLTLDLRDNGFSG----VIPH 636 (911)
Q Consensus 566 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-----~~~~L~~L~Ls~N~l~~----~~p~ 636 (911)
.+. .+++|+.|++++|.+...-...+. ..+.|++|.+.+|.++. .+..
T Consensus 236 aL~-----------------------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 236 ALS-----------------------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred Hhc-----------------------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 222 344566666666665543322221 24678888888887763 2233
Q ss_pred hhhcCCCccEEEccCCccc
Q 043567 637 QINECSNLRFLLLRGNNLE 655 (911)
Q Consensus 637 ~l~~l~~L~~L~L~~N~l~ 655 (911)
.+...+.|+.|+|++|++.
T Consensus 293 ~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcchhhHHhcCCccccc
Confidence 4556788888888888883
No 36
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.84 E-value=3.2e-09 Score=76.72 Aligned_cols=42 Identities=33% Similarity=0.670 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeec
Q 043567 39 KTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCN 87 (911)
Q Consensus 39 ~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~ 87 (911)
++|++||++||+++.. +|.+.+.+|.... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~-----~~~~~l~~W~~~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNN-----DPSGVLSSWNPSS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT------SC-CCCTT--TT----S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhccc-----ccCcccccCCCcC--CCCCeeeccEEeC
Confidence 6899999999999952 4567899998751 2699999999995
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1e-09 Score=109.24 Aligned_cols=134 Identities=22% Similarity=0.212 Sum_probs=93.6
Q ss_pred ccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCE
Q 043567 543 MGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLT 622 (911)
Q Consensus 543 l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~ 622 (911)
+.....|+.+||++|.++ .+.++..-.|.++.|++|+|.+...-. ...+++|+.|||++|.++ .+-.+-..+-++++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 334456777777777776 666666667777777777777765433 225677888888888776 33334445667888
Q ss_pred EeCCCCcccccCchhhhcCCCccEEEccCCccccc-CChhhhcCCCCCeEEcCCCcCCCC
Q 043567 623 LDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ-IPNQICQLTGLGMMDLSHNKFNGS 681 (911)
Q Consensus 623 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~g~ 681 (911)
|.|++|.+... .+++++-+|..||+++|+|... --..+++++-|+.+.|.+|++.+.
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88888887632 5677788888888888888632 234577888888888888888753
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=8.5e-09 Score=81.58 Aligned_cols=59 Identities=41% Similarity=0.563 Sum_probs=29.9
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR 821 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ 821 (911)
+|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333444555555555555555554444455555555555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=9.8e-09 Score=81.25 Aligned_cols=61 Identities=41% Similarity=0.588 Sum_probs=57.1
Q ss_pred CCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcC
Q 043567 786 QEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNL 846 (911)
Q Consensus 786 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 846 (911)
++|++|++++|+++...+..|.++++|++||+++|+++...|..|..++.|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999988889999999999999999986
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=1.5e-08 Score=122.02 Aligned_cols=202 Identities=26% Similarity=0.286 Sum_probs=115.0
Q ss_pred CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCccc-CCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCE
Q 043567 157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNI-QGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235 (911)
Q Consensus 157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 235 (911)
...+...+-+|.+... +.. ..++.|++|-+..|.. ...++...|..++.|++|||++|.=-+.+|.. ++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhc
Confidence 4455555555554311 111 1234677777777651 12455556777788888888776655567764 777888888
Q ss_pred EeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCC-CccChhhhcccccccEEEecCC
Q 043567 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE-GTFPLSSLANHSKLEVLLLSTR 314 (911)
Q Consensus 236 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~l~~l~~L~~L~L~~~ 314 (911)
|+++++.+.. +|..+++++.|.+|++..+.-...+|.....+++|++|.+...... +..-...+.++.+|+.+.....
T Consensus 600 L~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 600 LDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccCCCccc-cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 8888877774 6777888888888888777655455666666788888877655421 1222234445555555544321
Q ss_pred CccccccccCcCCCCCc----eEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567 315 NNMLQVQTENFLPTFQL----KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD 365 (911)
Q Consensus 315 ~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~ 365 (911)
.. .....+..+..| +.+.+.++.....+..+..+.+|+.|.+.++.+.
T Consensus 679 s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 679 SV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hh---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 11 000111222222 2333333444555566666667777777776664
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=2e-09 Score=121.56 Aligned_cols=216 Identities=34% Similarity=0.353 Sum_probs=99.8
Q ss_pred CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEE
Q 043567 157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236 (911)
Q Consensus 157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 236 (911)
..++.++++.|.+.. +-..+..+++|+.|++..|+|..... .+..+++|++|++++|.|+ .+.. +..++.|+.|
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc--chhhhhcchheeccccccc-cccc--hhhccchhhh
Confidence 333344444444432 22224444555555555555442111 1444555555555555554 2221 4444455555
Q ss_pred eccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCc-ccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP-SIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN 315 (911)
Q Consensus 237 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~ 315 (911)
++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...- .+..+..+..+++..+.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc---chHHHHHHHHhhccccc
Confidence 5555555542 233445555555555555553322 1 345555666666666554211 12222222222222211
Q ss_pred ccccccccCcCCCC--CceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccc
Q 043567 316 NMLQVQTENFLPTF--QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390 (911)
Q Consensus 316 ~~~~~~~~~~~~~~--~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 390 (911)
. ..+. ...... +|+.+++++|.+..++..+..+..+..|++.+|.+...-. ....+.+..+....+.+.
T Consensus 220 i-~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 I-SKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLA 290 (414)
T ss_pred c-eecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc---ccccchHHHhccCcchhc
Confidence 1 1110 011111 3677777777777766666667777777777777652211 123344444555555443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=4.5e-09 Score=118.69 Aligned_cols=247 Identities=26% Similarity=0.248 Sum_probs=148.1
Q ss_pred ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 504 (911)
+..++.+++..|.+.. +-..+..+++|+.|++.+|++.+ +... ...+++|++|++++|.|+... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence 3444555555555542 22234555666666666666652 2221 234666666666666665433 23455567777
Q ss_pred EccCccccccccccccCCCCCcEEECcCCcCcccCC-cCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccc
Q 043567 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP-HWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL 583 (911)
Q Consensus 505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l 583 (911)
++++|.++.. ..+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence 7777777632 334456777777777777774333 2 4667777778888887752 23334444555557777776
Q ss_pred ccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCccccc---CC
Q 043567 584 SGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ---IP 659 (911)
Q Consensus 584 ~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---ip 659 (911)
+..-+... ....|+.+++++|++. .++..+..+..+..|++.+|++... ..+.....+..+....|.+... ..
T Consensus 221 ~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 221 SKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred eeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 64433221 1113788888888887 3445666777888888888888754 3455566777777777776522 12
Q ss_pred hh-hhcCCCCCeEEcCCCcCCCCCCc
Q 043567 660 NQ-ICQLTGLGMMDLSHNKFNGSIPS 684 (911)
Q Consensus 660 ~~-l~~l~~L~~L~Ls~N~l~g~ip~ 684 (911)
.. ....+.++.+.+..|+.....+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccccccccccCcccccccc
Confidence 22 45567778888888877655543
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=1.4e-07 Score=113.68 Aligned_cols=129 Identities=25% Similarity=0.267 Sum_probs=74.1
Q ss_pred CcccEEEccCCccccccCCCCCCCCCccEEEccCCcC-CcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEE
Q 043567 377 TKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF-TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFL 455 (911)
Q Consensus 377 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 455 (911)
...+...+-+|.+.... ....++.|++|-+..|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 44455555555443221 112344566666666641 225566655566777777777666556667777777777777
Q ss_pred eccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCc
Q 043567 456 DLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENN 509 (911)
Q Consensus 456 ~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 509 (911)
+++...+. .+|..+ ..+..|.+|++..+.-...++.....+.+|++|.+...
T Consensus 601 ~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 77777665 666654 45666666666665544444444444666666665443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.6e-09 Score=104.23 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=80.9
Q ss_pred CCcEEeCCCCCCCc-cchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCC-CCCccCcccccCCCCCCE
Q 043567 158 RLKILNLGYNYFDD-SIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNF-INGSLESQGICELKNLFV 235 (911)
Q Consensus 158 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~ 235 (911)
+|++||||...++- ..-..+..|.+|+.|.|.++++.+.+. ..+++-.+|+.|+++.+. ++..--.-.+.+|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46666666666542 223335566666666666666665554 456666667777766643 221111113566777777
Q ss_pred EeccCCcCCCCCCcc-cCCC-CCCcEEEccCCc--C-CccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEE
Q 043567 236 LNLEKNNIEDHLPNC-LNNM-TRLKVLDISFNQ--L-SGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310 (911)
Q Consensus 236 L~Ls~n~l~~~~p~~-l~~l-~~L~~L~Ls~n~--l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~ 310 (911)
|+|++|.+....-.. +... .+|+.|+|+++. + ...+..-...+++|.+|||++|..-..--...+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 777777655432111 1111 356666666542 1 1112222345666666666665422111123455555666665
Q ss_pred ecCCCcc
Q 043567 311 LSTRNNM 317 (911)
Q Consensus 311 L~~~~~~ 317 (911)
++.|..+
T Consensus 345 lsRCY~i 351 (419)
T KOG2120|consen 345 LSRCYDI 351 (419)
T ss_pred hhhhcCC
Confidence 5555443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=6e-09 Score=115.56 Aligned_cols=178 Identities=25% Similarity=0.232 Sum_probs=84.2
Q ss_pred cccCCCCCCEEeCCCCCCCcccCcccccccCCC-CCCcEEeCCCCC--CCccchhhhcC------CCCCCEEEcCCcccC
Q 043567 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL-KRLKILNLGYNY--FDDSIFLYLNA------LTSLTTLILRENNIQ 194 (911)
Q Consensus 124 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~--l~~~~~~~l~~------l~~L~~L~Ls~n~l~ 194 (911)
.+.+|+.|++|.|.++.+.... .+..+ ..|+.|-.++.- +...+....+. .-.|.+.+.+.|.+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~------GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAK------GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred eeccccceeeEEecCcchhhhh------hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 4677899999999999876421 11111 123333332210 00001110110 123444555555553
Q ss_pred CccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCccc
Q 043567 195 GSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274 (911)
Q Consensus 195 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 274 (911)
.+. ..+.-++.|+.|||++|+++ ... .+..|+.|++|||++|.+....--....+. |+.|.+++|.++.. ..
T Consensus 178 -~mD-~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 178 -LMD-ESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred -hHH-HHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hh
Confidence 111 34445555556666666555 222 355555566666666555542111222332 55666666655522 24
Q ss_pred ccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567 275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN 315 (911)
Q Consensus 275 l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~ 315 (911)
+.+|++|+.||+++|-+.+.-....+..+..|++|.|.+|.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 45555666666666655543333334444455555554443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1e-08 Score=102.32 Aligned_cols=179 Identities=24% Similarity=0.193 Sum_probs=129.3
Q ss_pred CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcc-cCCccChhhhcCCCCC
Q 043567 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENN-IQGSRTKQGLSKLKNL 208 (911)
Q Consensus 130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L 208 (911)
.|++||||+..++..-- ..-+..+.+|+.|.+.++++++.+...++.-.+|+.|+|+.+. ++.....-.+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 69999999998875322 1457789999999999999999999999999999999999874 3322222357899999
Q ss_pred CEEeCCCCCCCCccCcccccC-CCCCCEEeccCCcC---CCCCCcccCCCCCCcEEEccCCc-CCccCcccccCCCCCCe
Q 043567 209 EALDLSSNFINGSLESQGICE-LKNLFVLNLEKNNI---EDHLPNCLNNMTRLKVLDISFNQ-LSGSFPSIISNLTSLEY 283 (911)
Q Consensus 209 ~~L~Ls~n~l~~~i~~~~~~~-l~~L~~L~Ls~n~l---~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~ 283 (911)
..|+|+.|.++...-...+.. -++|+.|+|+++.- ...+..-...+++|.+|||+.|. ++......|.+++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 999999998874432222222 26788999988642 11222234578999999999864 66555667889999999
Q ss_pred eeccCCcCCCccChh--hhcccccccEEEecC
Q 043567 284 LALFDNNFEGTFPLS--SLANHSKLEVLLLST 313 (911)
Q Consensus 284 L~L~~n~l~~~~p~~--~l~~l~~L~~L~L~~ 313 (911)
|.++.|.. .+|.. .+...+.|.+|++.+
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 99999863 34421 334455666666543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=3.6e-08 Score=87.37 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=60.9
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
.++.|+|++|+++ .+|+++..++.|+.||++.|.+. ..|+.+..|.++-.||.-+|.+- +||..+-.-+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 4566777777777 77777877888888888888876 56777777777777877777776 566554333334445556
Q ss_pred CCcCeecCCCCCC
Q 043567 843 YNNLSGLIPDKGQ 855 (911)
Q Consensus 843 ~N~l~g~iP~~~~ 855 (911)
++++.|.-|.++|
T Consensus 155 nepl~~~~~~klq 167 (177)
T KOG4579|consen 155 NEPLGDETKKKLQ 167 (177)
T ss_pred CCcccccCccccc
Confidence 6666666665543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=5.6e-07 Score=89.06 Aligned_cols=93 Identities=19% Similarity=0.300 Sum_probs=57.4
Q ss_pred cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCC---Cccch-------hhhcCCCCCCEEEcCCcccCC
Q 043567 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIF-------LYLNALTSLTTLILRENNIQG 195 (911)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~-------~~l~~l~~L~~L~Ls~n~l~~ 195 (911)
..+..++.+|||+|.|...-...+...+.+-++|+..+++.-.. .+.++ +.+.+|++|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34677888888888887654433445566677788877776332 12222 345567777777777777654
Q ss_pred ccCh---hhhcCCCCCCEEeCCCCCC
Q 043567 196 SRTK---QGLSKLKNLEALDLSSNFI 218 (911)
Q Consensus 196 ~~~~---~~l~~l~~L~~L~Ls~n~l 218 (911)
..|. +.+++-+.|++|.+++|.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC
Confidence 4432 3445666666777766665
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=2.4e-07 Score=103.15 Aligned_cols=125 Identities=28% Similarity=0.283 Sum_probs=89.6
Q ss_pred ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCc-CccCcCCCcEEEc
Q 043567 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPH-WMGNLSYLEVLLM 554 (911)
Q Consensus 476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L 554 (911)
.|...+.+.|.+.- ...++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+. .+|. ....+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 45666677776652 234455567888888888888744 36778888899999999887 3443 333444 888888
Q ss_pred cCcccccccchhhccCCCCcEEEccCcccccccCccc--ccccccEEEcccCccc
Q 043567 555 SKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYLQKNSLS 607 (911)
Q Consensus 555 ~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~Ls~n~l~ 607 (911)
++|.++. -..+.++.+|+-||+++|-+.+.-.-.+ .+..|+.|+|.+|.+.
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888762 3457788888888999988877544333 6778888888888875
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=5.4e-07 Score=80.04 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=82.2
Q ss_pred cCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEE
Q 043567 569 NHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFL 647 (911)
Q Consensus 569 ~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 647 (911)
....|...++++|.+...++... ..+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 34455556666666665555443 5567778888888887 67888888888888888888888 667777778888888
Q ss_pred EccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccc
Q 043567 648 LLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT 687 (911)
Q Consensus 648 ~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 687 (911)
+..+|.+. .||..+..-+.....++.++++.+.-|..++
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 88888876 6776655444555566677777766665443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=1.9e-06 Score=86.43 Aligned_cols=85 Identities=28% Similarity=0.305 Sum_probs=36.5
Q ss_pred CCCCCEEEcCCcccCCccC-hhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCC
Q 043567 180 LTSLTTLILRENNIQGSRT-KQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRL 257 (911)
Q Consensus 180 l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L 257 (911)
++.++.+||.+|.|+.--. ...+.++++|++|+++.|++...|... -....+|++|-|.+..+.-. ....+..++.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3444444444444432110 012345555555555555554332221 02344555555555444321 12233445555
Q ss_pred cEEEccCC
Q 043567 258 KVLDISFN 265 (911)
Q Consensus 258 ~~L~Ls~n 265 (911)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555555
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=4.6e-06 Score=82.75 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=21.5
Q ss_pred ccCCCCCCEEeccCCcCCCCCCcc----cCCCCCCcEEEccCCcC
Q 043567 227 ICELKNLFVLNLEKNNIEDHLPNC----LNNMTRLKVLDISFNQL 267 (911)
Q Consensus 227 ~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l 267 (911)
+.+|++|+..+||+|.+....|+. ++.-+.|.+|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 455566666666666555444432 23445555555555544
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3.4e-05 Score=83.68 Aligned_cols=73 Identities=12% Similarity=0.271 Sum_probs=38.1
Q ss_pred cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567 593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD 672 (911)
Q Consensus 593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~ 672 (911)
+..+++|++++|.++ .+|. -..+|+.|++++|.-...+|..+. ++|+.|++++|.....+|. +|+.|+
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEE
Confidence 566677777777655 3441 123566777766433335554442 3666666666632223442 345555
Q ss_pred cCCCc
Q 043567 673 LSHNK 677 (911)
Q Consensus 673 Ls~N~ 677 (911)
++.+.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 54443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.5e-05 Score=57.60 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=18.8
Q ss_pred CCCEEECCCCcCCccccccccccCCCCEEeccCCcCc
Q 043567 787 EIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823 (911)
Q Consensus 787 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 823 (911)
+|++|++++|+|+ .+|..+++|++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555555
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=4.7e-06 Score=83.78 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=49.9
Q ss_pred CCCCCEEEcCCcccCCccChhhh-cCCCCCCEEeCCCCCCCCccCc-ccccCCCCCCEEeccCCcCCCCCCcccCCCCCC
Q 043567 180 LTSLTTLILRENNIQGSRTKQGL-SKLKNLEALDLSSNFINGSLES-QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRL 257 (911)
Q Consensus 180 l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 257 (911)
...++.|.+-++.|........| ...+.++.+||.+|.|+..-.. ..+.++|.|++|+++.|.+...|...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 33444555555555322221222 3455666666666666522111 123456666666666666554322211234455
Q ss_pred cEEEccCCcCCc-cCcccccCCCCCCeeeccCC
Q 043567 258 KVLDISFNQLSG-SFPSIISNLTSLEYLALFDN 289 (911)
Q Consensus 258 ~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n 289 (911)
+.|-|.+..+.= .....+..++.++.|.++.|
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 555555544331 11122334444444444444
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.6e-05 Score=56.41 Aligned_cols=38 Identities=37% Similarity=0.639 Sum_probs=32.9
Q ss_pred ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCc
Q 043567 762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSE 800 (911)
Q Consensus 762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g 800 (911)
++|++|++++|+|+ .+|.++++|++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36889999999999 788889999999999999999983
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.72 E-value=1.5e-06 Score=91.38 Aligned_cols=87 Identities=15% Similarity=-0.017 Sum_probs=39.4
Q ss_pred cCCCCEEECCCCCCCCC-CchhhhhcCCcccEEEccCCccccc-cCCCC-CCCCCccEEEccCCcCCcCC-ChhHHHhcc
Q 043567 351 QFDLKYLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNNSFTGN-LQLPD-DKHDFLHHLDISSNNFTGKL-PQDMGIILQ 426 (911)
Q Consensus 351 ~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~~L~~L~ls~n~l~~~i-p~~~~~~l~ 426 (911)
+..|+.|+.+++..-+. .-..+.++..+|+++.+..++.-+. .-... .+++.|+.+++..+...-.. -..+...++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 34566666666543222 2223344566666666666653211 11111 25555666665555432111 011112345
Q ss_pred CCcEEEcccCc
Q 043567 427 KLLYMDMSNNH 437 (911)
Q Consensus 427 ~L~~L~Ls~n~ 437 (911)
.|+++.+++|.
T Consensus 373 ~lr~lslshce 383 (483)
T KOG4341|consen 373 RLRVLSLSHCE 383 (483)
T ss_pred hhccCChhhhh
Confidence 55555555554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=2.1e-05 Score=92.81 Aligned_cols=149 Identities=25% Similarity=0.301 Sum_probs=94.9
Q ss_pred CCCcEEeCCCCCC-Cccchhhhc-CCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCC
Q 043567 157 KRLKILNLGYNYF-DDSIFLYLN-ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF 234 (911)
Q Consensus 157 ~~L~~L~Ls~n~l-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 234 (911)
.+|++||+++... ...-|..++ .+|+|++|.+++-.+...--.....++++|+.||+|+++++ .+ ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 5688888887653 222333333 57888888888766643222244577888888888888887 33 3578888888
Q ss_pred EEeccCCcCCC-CCCcccCCCCCCcEEEccCCcCCccC--c----ccccCCCCCCeeeccCCcCCCccChhhhccccccc
Q 043567 235 VLNLEKNNIED-HLPNCLNNMTRLKVLDISFNQLSGSF--P----SIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307 (911)
Q Consensus 235 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~ 307 (911)
+|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..|++|+.||.++..+.+.+-...+...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88887766554 12235677888888888876644221 1 12234788888888887776554433344444444
Q ss_pred E
Q 043567 308 V 308 (911)
Q Consensus 308 ~ 308 (911)
.
T Consensus 279 ~ 279 (699)
T KOG3665|consen 279 Q 279 (699)
T ss_pred h
Confidence 3
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.55 E-value=5.2e-06 Score=87.48 Aligned_cols=62 Identities=26% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCcEEEccCCcCCcc--CcccccCCCCCCeeeccCCcCCCccC-hhhhcccccccEEEecCCCcc
Q 043567 256 RLKVLDISFNQLSGS--FPSIISNLTSLEYLALFDNNFEGTFP-LSSLANHSKLEVLLLSTRNNM 317 (911)
Q Consensus 256 ~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~l~~l~~L~~L~L~~~~~~ 317 (911)
.|+.|.++++.-.+. +-....+++++++|.+.++....+.. ...-..+++|+++++..+..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i 203 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI 203 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh
Confidence 466666766543221 22233456677777666664221111 112234566666666544433
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.0003 Score=76.54 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=25.0
Q ss_pred ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC
Q 043567 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533 (911)
Q Consensus 474 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 533 (911)
+.+++.|++++|.++.. | . -.++|++|.+++|.--..+|..+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 45566666666654432 2 1 11245555555533222334332 234555555555
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00019 Score=68.77 Aligned_cols=83 Identities=31% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCC
Q 043567 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLE 209 (911)
Q Consensus 130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 209 (911)
....+||++|.+... ..|..+++|..|.|++|.|+...|..-.-+++|++|.|.+|+|......+.+..+++|+
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 445666666666544 34555666666666666665544444444455555555555543221112233444444
Q ss_pred EEeCCCCCC
Q 043567 210 ALDLSSNFI 218 (911)
Q Consensus 210 ~L~Ls~n~l 218 (911)
+|.+-+|.+
T Consensus 117 ~Ltll~Npv 125 (233)
T KOG1644|consen 117 YLTLLGNPV 125 (233)
T ss_pred eeeecCCch
Confidence 444444433
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.28 E-value=0.00048 Score=66.04 Aligned_cols=105 Identities=27% Similarity=0.293 Sum_probs=66.9
Q ss_pred CCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEc
Q 043567 183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDI 262 (911)
Q Consensus 183 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 262 (911)
=+.++|.+.++. .+. .-=.-+.+...+||++|.+. .++ .|..+++|.+|.|++|+|+.+-|.--..+++|+.|.|
T Consensus 21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccc-chh-hccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 456677776653 111 10112346677888888875 444 3777888888888888888766654455677888888
Q ss_pred cCCcCCccC-cccccCCCCCCeeeccCCcCC
Q 043567 263 SFNQLSGSF-PSIISNLTSLEYLALFDNNFE 292 (911)
Q Consensus 263 s~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~ 292 (911)
.+|++.... -.-+..+++|++|.+-+|..+
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchh
Confidence 888766321 123556677777777777654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.27 E-value=0.0006 Score=63.21 Aligned_cols=121 Identities=21% Similarity=0.317 Sum_probs=41.7
Q ss_pred hcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 043567 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTR 256 (911)
Q Consensus 177 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 256 (911)
|.++++|+.+.+.. .+. .+....|.++++|+.+++..+ +. .++..+|.++++|+.+.+.+ .+.......|..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 33444444444442 222 233344555555555555443 33 34444455555555555543 333323344555555
Q ss_pred CcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccc
Q 043567 257 LKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306 (911)
Q Consensus 257 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L 306 (911)
|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 555555443 332333344444 555555543 222 3333444444443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00011 Score=73.52 Aligned_cols=88 Identities=27% Similarity=0.341 Sum_probs=57.8
Q ss_pred cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCC--CCCccchhhhcCCCCCCEEEcCCcccCCccChhhhc
Q 043567 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN--YFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLS 203 (911)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 203 (911)
..+..|+.|++.+..++.. ..+-.+++|++|.+|.| .+.+.++.....+++|++|++++|++...-....+.
T Consensus 40 d~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 4456667777777776654 45777788888888888 555666666666788888888888776322222345
Q ss_pred CCCCCCEEeCCCCCCC
Q 043567 204 KLKNLEALDLSSNFIN 219 (911)
Q Consensus 204 ~l~~L~~L~Ls~n~l~ 219 (911)
.+++|..||+.+|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 5566666666666554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.21 E-value=0.00081 Score=62.32 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=32.1
Q ss_pred hhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCC
Q 043567 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMT 255 (911)
Q Consensus 176 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 255 (911)
.|.++++|+.+.+..+ +. .++...|.+++.|+.+.+.+ .+. .++...|..+++|+.+++..+ +.......|.++
T Consensus 30 ~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~- 103 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC- 103 (129)
T ss_dssp TTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred hccccccccccccccc-cc-ccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence 3444444444444432 22 22233444444455555543 222 233334455555555555443 333333344444
Q ss_pred CCcEEEccCCcCCccCcccccCCCCC
Q 043567 256 RLKVLDISFNQLSGSFPSIISNLTSL 281 (911)
Q Consensus 256 ~L~~L~Ls~n~l~~~~p~~l~~l~~L 281 (911)
+|+.+.+.. .+.......|.++++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 555555543 2222333444444443
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00011 Score=86.89 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=58.2
Q ss_pred CCCCEEEcCCcccCCcc-ChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcE
Q 043567 181 TSLTTLILRENNIQGSR-TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKV 259 (911)
Q Consensus 181 ~~L~~L~Ls~n~l~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 259 (911)
.+|++||+++......- +...-..+|+|+.|.+++-.+...--.....++++|..||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777775432111 1122245677777777665553211112345566666666666666653 45566666666
Q ss_pred EEccCCcCCc-cCcccccCCCCCCeeeccCCcC
Q 043567 260 LDISFNQLSG-SFPSIISNLTSLEYLALFDNNF 291 (911)
Q Consensus 260 L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l 291 (911)
|.+.+=.+.. ..-..+.+|++|++||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 6665544432 1122445566666666665543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=8.5e-05 Score=74.27 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=45.4
Q ss_pred CCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCC
Q 043567 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKN 207 (911)
Q Consensus 128 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 207 (911)
+.+.+.|++.+|.++++ ....+++.|++|.||-|.|+.. ..+..|++|+.|.|..|.|...-....+.++++
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 44566777777777665 3455566666666666665532 224455555555555555543222233445555
Q ss_pred CCEEeCCCCCCC
Q 043567 208 LEALDLSSNFIN 219 (911)
Q Consensus 208 L~~L~Ls~n~l~ 219 (911)
|+.|.|..|.-.
T Consensus 90 Lr~LWL~ENPCc 101 (388)
T KOG2123|consen 90 LRTLWLDENPCC 101 (388)
T ss_pred hhhHhhccCCcc
Confidence 555555554443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.003 Score=63.53 Aligned_cols=67 Identities=30% Similarity=0.327 Sum_probs=30.0
Q ss_pred hhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCC--CCCCccCcccccCCCCCCEEeccCCcCC
Q 043567 174 FLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSN--FINGSLESQGICELKNLFVLNLEKNNIE 244 (911)
Q Consensus 174 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~i~~~~~~~l~~L~~L~Ls~n~l~ 244 (911)
......+..|+.|++.+..++. . ..+-.+++|++|++|.| ++.+.++.. ..++++|++|++++|++.
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt-~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTT-L--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccccccchhhhhhhccceee-c--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc
Confidence 3333344455555555444431 1 12344555555555555 333333321 233355555555555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.00084 Score=67.36 Aligned_cols=68 Identities=22% Similarity=0.151 Sum_probs=37.3
Q ss_pred HHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccc
Q 043567 421 MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR 490 (911)
Q Consensus 421 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~ 490 (911)
++..++.|+.|.|+-|+++..-| +..|++|++|+|..|.|..--.-..+.++++|+.|+|..|.-.|.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 33446666666666666654333 556666666666666665322233445555555555555544443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.00 E-value=0.0029 Score=37.98 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=9.0
Q ss_pred CCEEeccCCcCcccCCCCCC
Q 043567 812 IESLDLSHNRLSGQIPPKLT 831 (911)
Q Consensus 812 L~~LdLs~N~l~g~ip~~l~ 831 (911)
|++|||++|+++ .||++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444555555554 4444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.92 E-value=0.0014 Score=76.14 Aligned_cols=110 Identities=21% Similarity=0.098 Sum_probs=46.5
Q ss_pred CCCCcEEeCCCCCCCcc--chhhhcCCCCCCEEEcCCc-ccCCccC---hhhhcCCCCCCEEeCCCCC-CCCccCccccc
Q 043567 156 LKRLKILNLGYNYFDDS--IFLYLNALTSLTTLILREN-NIQGSRT---KQGLSKLKNLEALDLSSNF-INGSLESQGIC 228 (911)
Q Consensus 156 l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~l~~L~~L~Ls~n~-l~~~i~~~~~~ 228 (911)
++.|+.|.+..+.--.. .-.....++.|+.|+++++ ......+ ......+++|+.|+++++. ++. ..-..++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence 44555555554432111 2333445555555555542 1100010 1123344555666665555 331 1111122
Q ss_pred -CCCCCCEEeccCCc-CCCCC-CcccCCCCCCcEEEccCCc
Q 043567 229 -ELKNLFVLNLEKNN-IEDHL-PNCLNNMTRLKVLDISFNQ 266 (911)
Q Consensus 229 -~l~~L~~L~Ls~n~-l~~~~-p~~l~~l~~L~~L~Ls~n~ 266 (911)
.|++|++|.+.++. +++.. -.....++.|++|+++.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25566666655554 33321 1122345556666666554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.004 Score=37.39 Aligned_cols=20 Identities=55% Similarity=0.773 Sum_probs=10.4
Q ss_pred CCEEECCCCcCCccccccccc
Q 043567 788 IPVLNMSHNFLSESIPESFSN 808 (911)
Q Consensus 788 L~~L~Ls~N~l~g~ip~~l~~ 808 (911)
|++|||++|+|+ .||++|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 45554443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.55 E-value=0.0034 Score=72.92 Aligned_cols=225 Identities=22% Similarity=0.123 Sum_probs=119.1
Q ss_pred cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCC-CCCcc----chhhhcCCCCCCEEEcCCcc-cCCccCh
Q 043567 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN-YFDDS----IFLYLNALTSLTTLILRENN-IQGSRTK 199 (911)
Q Consensus 126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-l~~~~~~ 199 (911)
...+.|+.|.+.++.-..... .......+++|+.|+++++ ..... .......+++|+.|+++.+. +++..-.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 346788888888774332210 1145677888888888873 21111 12344567888888888887 5433222
Q ss_pred hhhcCCCCCCEEeCCCCC-CCCccCcccccCCCCCCEEeccCCcCCCC--CCcccCCCCCCcEEEccCCc----CC----
Q 043567 200 QGLSKLKNLEALDLSSNF-INGSLESQGICELKNLFVLNLEKNNIEDH--LPNCLNNMTRLKVLDISFNQ----LS---- 268 (911)
Q Consensus 200 ~~l~~l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~----l~---- 268 (911)
.....+++|++|.+.++. ++..--......++.|++|+++++..... +.....++++|+.|.+.... ++
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 222347888888877776 55332233456678888888887765321 22223345555554433221 11
Q ss_pred ---------ccCcccccCCCCCCeeeccCCcCCCccC-hhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCC
Q 043567 269 ---------GSFPSIISNLTSLEYLALFDNNFEGTFP-LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPN 338 (911)
Q Consensus 269 ---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 338 (911)
......+..+++++.+.+..+... ... ...+..++.|+ ..+.. .......++.|++..
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~-~~l~~----------~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLT-ESLEL----------RLCRSDSLRVLNLSD 410 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCcccc-hHHHH----------HhccCCccceEeccc
Confidence 011122345666666666666522 222 23344444442 11110 111112278888888
Q ss_pred CCCCCCCh--hhhc-cCCCCEEECCCCCC
Q 043567 339 CSLNVIPP--FLLH-QFDLKYLDLSHNDL 364 (911)
Q Consensus 339 n~l~~ip~--~l~~-~~~L~~L~Ls~n~l 364 (911)
+...+... .... +..++.+++.++..
T Consensus 411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 411 CRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred CccccccchHHHhhhhhccccCCccCccc
Confidence 87633221 1111 55677777777654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.06 E-value=0.0028 Score=71.83 Aligned_cols=164 Identities=28% Similarity=0.275 Sum_probs=95.0
Q ss_pred CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhc----CC-CCCCEEEcCCcccCCccC---hhh
Q 043567 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN----AL-TSLTTLILRENNIQGSRT---KQG 201 (911)
Q Consensus 130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~---~~~ 201 (911)
.+..|+|.+|.+.......+..++.....|..|++++|.+.+..-..+. .. ..+++|++..|.+++... ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3677778888777665555556677778888888888877644333222 22 456667777776654322 234
Q ss_pred hcCCCCCCEEeCCCCCCC--Ccc-Cccc----ccCCCCCCEEeccCCcCCCC----CCcccCCCCC-CcEEEccCCcCCc
Q 043567 202 LSKLKNLEALDLSSNFIN--GSL-ESQG----ICELKNLFVLNLEKNNIEDH----LPNCLNNMTR-LKVLDISFNQLSG 269 (911)
Q Consensus 202 l~~l~~L~~L~Ls~n~l~--~~i-~~~~----~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~-L~~L~Ls~n~l~~ 269 (911)
+....+++.+|++.|.+. |.. .... +....++++|++++|.++.. +...+...+. ++.|++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 555777777777777763 100 0111 22456677777777776532 1122333444 5567777777664
Q ss_pred c----CcccccCC-CCCCeeeccCCcCCC
Q 043567 270 S----FPSIISNL-TSLEYLALFDNNFEG 293 (911)
Q Consensus 270 ~----~p~~l~~l-~~L~~L~L~~n~l~~ 293 (911)
. ..+.+..+ ..+++++++.|.++.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 3 22334444 556777777777653
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.02 E-value=0.0033 Score=71.33 Aligned_cols=170 Identities=26% Similarity=0.269 Sum_probs=120.7
Q ss_pred cccCCCCCCEEeCCCCCCCcccCcccccccCCC-CCCcEEeCCCCCCCc----cchhhhcCCCCCCEEEcCCcccCC--c
Q 043567 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL-KRLKILNLGYNYFDD----SIFLYLNALTSLTTLILRENNIQG--S 196 (911)
Q Consensus 124 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~--~ 196 (911)
.+.....|+.|++++|.+.+.....+...+... +.|++|++..|.+++ .+...+.....++.++++.|.+.. .
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 567788999999999999854333333445554 678889999998864 356677788999999999998741 1
Q ss_pred c-Chhhh----cCCCCCCEEeCCCCCCCCcc---CcccccCCCC-CCEEeccCCcCCCC----CCcccCCC-CCCcEEEc
Q 043567 197 R-TKQGL----SKLKNLEALDLSSNFINGSL---ESQGICELKN-LFVLNLEKNNIEDH----LPNCLNNM-TRLKVLDI 262 (911)
Q Consensus 197 ~-~~~~l----~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~~-L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~L 262 (911)
. ....+ ....++++|++++|.++... -..++...+. +..+++..|.+.+. ....+..+ ..++++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 1 11223 35778999999999986110 0123445555 77799999998754 23345555 67899999
Q ss_pred cCCcCCccC----cccccCCCCCCeeeccCCcCCC
Q 043567 263 SFNQLSGSF----PSIISNLTSLEYLALFDNNFEG 293 (911)
Q Consensus 263 s~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~ 293 (911)
+.|.++... ...+..++.++.+.++.|.+..
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 999998643 3445677889999999998764
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.84 E-value=0.22 Score=27.69 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=3.1
Q ss_pred CCEEECCCCc
Q 043567 788 IPVLNMSHNF 797 (911)
Q Consensus 788 L~~L~Ls~N~ 797 (911)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.82 E-value=0.011 Score=58.05 Aligned_cols=88 Identities=22% Similarity=0.192 Sum_probs=42.3
Q ss_pred hhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCC
Q 043567 175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNM 254 (911)
Q Consensus 175 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 254 (911)
..+..+..-+.||++.|++... . ..|+.++.|+.||++.|++. ..|. .++....++.+++..|..+. .|.+++..
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~-~-~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~-~p~s~~k~ 110 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNL-G-KNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQ-QPKSQKKE 110 (326)
T ss_pred hhhhccceeeeehhhhhHHHhh-c-cchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhh-CCcccccc
Confidence 3344555555566555554311 1 22444455555555555554 3333 24444455555555444443 44455555
Q ss_pred CCCcEEEccCCcC
Q 043567 255 TRLKVLDISFNQL 267 (911)
Q Consensus 255 ~~L~~L~Ls~n~l 267 (911)
++++++++-.|.+
T Consensus 111 ~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 111 PHPKKNEQKKTEF 123 (326)
T ss_pred CCcchhhhccCcc
Confidence 5555555544443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.14 E-value=0.021 Score=56.10 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=67.4
Q ss_pred ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567 762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV 841 (911)
Q Consensus 762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 841 (911)
...+.||+|.|++. ..-..+.-++.|..||++.|++. ..|..++++..+..+++-.|.++ ..|-++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 35677899999887 45566777888888999999886 78888888888888888888887 67888888888888888
Q ss_pred cCCcCe
Q 043567 842 SYNNLS 847 (911)
Q Consensus 842 s~N~l~ 847 (911)
-.|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 887754
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.38 E-value=0.63 Score=29.06 Aligned_cols=19 Identities=47% Similarity=0.586 Sum_probs=9.1
Q ss_pred CCCCEEeCCCCCCCCccCcc
Q 043567 206 KNLEALDLSSNFINGSLESQ 225 (911)
Q Consensus 206 ~~L~~L~Ls~n~l~~~i~~~ 225 (911)
++|++|+|++|+|+ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.38 E-value=0.63 Score=29.06 Aligned_cols=19 Identities=47% Similarity=0.586 Sum_probs=9.1
Q ss_pred CCCCEEeCCCCCCCCccCcc
Q 043567 206 KNLEALDLSSNFINGSLESQ 225 (911)
Q Consensus 206 ~~L~~L~Ls~n~l~~~i~~~ 225 (911)
++|++|+|++|+|+ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.40 E-value=0.22 Score=30.53 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=3.5
Q ss_pred CCEEECCCCcC
Q 043567 788 IPVLNMSHNFL 798 (911)
Q Consensus 788 L~~L~Ls~N~l 798 (911)
|+.|+|++|+|
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33333333333
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.13 E-value=1 Score=28.13 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=5.9
Q ss_pred CCCEEECCCCcCC
Q 043567 787 EIPVLNMSHNFLS 799 (911)
Q Consensus 787 ~L~~L~Ls~N~l~ 799 (911)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.13 E-value=1 Score=28.13 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=5.9
Q ss_pred CCCEEECCCCcCC
Q 043567 787 EIPVLNMSHNFLS 799 (911)
Q Consensus 787 ~L~~L~Ls~N~l~ 799 (911)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.95 E-value=0.63 Score=28.44 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=4.8
Q ss_pred CCcEEeCCCCCCC
Q 043567 158 RLKILNLGYNYFD 170 (911)
Q Consensus 158 ~L~~L~Ls~n~l~ 170 (911)
+|++|++++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.64 E-value=0.49 Score=46.10 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=17.9
Q ss_pred CCcEEEccCCcCCccCcccccCCCCCCeeeccCCc
Q 043567 256 RLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290 (911)
Q Consensus 256 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 290 (911)
.++.+|-++..+....-+.+.+++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 34555555555554444445555555555555554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.36 E-value=2.9 Score=26.21 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=10.0
Q ss_pred cCCCCEEeccCCcCc
Q 043567 809 LKMIESLDLSHNRLS 823 (911)
Q Consensus 809 l~~L~~LdLs~N~l~ 823 (911)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777765
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.61 E-value=3.7 Score=25.69 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=6.7
Q ss_pred CCCEEECCCCcCC
Q 043567 787 EIPVLNMSHNFLS 799 (911)
Q Consensus 787 ~L~~L~Ls~N~l~ 799 (911)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.67 E-value=1.4 Score=43.08 Aligned_cols=31 Identities=16% Similarity=0.062 Sum_probs=12.3
Q ss_pred EEeCCCCCCCccchhhhcCCCCCCEEEcCCc
Q 043567 161 ILNLGYNYFDDSIFLYLNALTSLTTLILREN 191 (911)
Q Consensus 161 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 191 (911)
.+|-++..|.......+.+++.++.|.+.++
T Consensus 105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3344444333333333444444444444333
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.33 E-value=7.4 Score=24.81 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=8.0
Q ss_pred CCCEEeccCCcCc
Q 043567 811 MIESLDLSHNRLS 823 (911)
Q Consensus 811 ~L~~LdLs~N~l~ 823 (911)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4666666666654
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.89 E-value=36 Score=37.91 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=19.5
Q ss_pred CCEEECCCCCCCCCCchh--hhhcCCcccEEEccCCccc
Q 043567 354 LKYLDLSHNDLDGAFPTW--ALQNNTKLEVLLLTNNSFT 390 (911)
Q Consensus 354 L~~L~Ls~n~l~~~~p~~--~~~~l~~L~~L~L~~n~l~ 390 (911)
+..+.++.|.+....-.. ....-+.+..|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 566666666654322211 1223345677777777654
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.03 E-value=20 Score=40.64 Aligned_cols=35 Identities=34% Similarity=0.308 Sum_probs=18.4
Q ss_pred CCCceEEECCCCCCCCC---ChhhhccCCCCEEECCCC
Q 043567 328 TFQLKVLRLPNCSLNVI---PPFLLHQFDLKYLDLSHN 362 (911)
Q Consensus 328 ~~~L~~L~L~~n~l~~i---p~~l~~~~~L~~L~Ls~n 362 (911)
.+.+..++|++|++..+ ..-....++|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555666666666332 223334445666666666
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=33.84 E-value=44 Score=37.31 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=8.4
Q ss_pred ccEEEccCCccccc
Q 043567 379 LEVLLLTNNSFTGN 392 (911)
Q Consensus 379 L~~L~L~~n~l~~~ 392 (911)
+++|....|...+.
T Consensus 356 ~q~l~~rdnnldge 369 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGE 369 (553)
T ss_pred eeEeeccccccccc
Confidence 66666666665544
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.54 E-value=41 Score=38.32 Aligned_cols=65 Identities=25% Similarity=0.157 Sum_probs=32.4
Q ss_pred ccCCCCEEECCCCCCCCC-CchhhhhcCCcccEEEccCC--ccccccCCCCCCCCCccEEEccCCcCC
Q 043567 350 HQFDLKYLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNN--SFTGNLQLPDDKHDFLHHLDISSNNFT 414 (911)
Q Consensus 350 ~~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~L~~L~ls~n~l~ 414 (911)
+.+.+..+.|++|++... --..+....++|+.|+|++| .+.....++-.....|++|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 344567777777776411 01123335566666777666 333222222233444555555555543
Done!