Query 043567
Match_columns 911
No_of_seqs 756 out of 5348
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-95 5E-100 891.2 50.7 718 32-884 4-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-73 6.7E-78 696.1 47.6 656 130-872 51-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-58 6.1E-63 559.1 51.1 610 133-859 8-634 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-58 1.5E-62 555.8 50.1 584 160-872 7-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.2E-53 7.6E-58 507.5 48.6 522 129-852 33-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.7E-53 5.8E-58 508.5 45.0 531 81-683 14-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-53 1.2E-57 505.7 44.9 525 157-852 32-563 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 8.1E-52 2.8E-56 510.5 44.9 573 133-882 8-591 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-51 5.6E-56 491.4 39.3 537 183-874 13-562 (606)
10 4eco_A Uncharacterized protein 100.0 4.7E-53 1.6E-57 504.3 25.7 306 402-824 274-601 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 4.3E-50 1.5E-54 495.1 38.9 536 161-874 8-564 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 5E-50 1.7E-54 485.0 32.7 506 34-606 263-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1E-47 3.5E-52 455.3 38.9 493 206-855 28-539 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 5.7E-47 2E-51 448.9 38.8 496 129-684 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.6E-47 3.3E-51 444.7 35.6 485 211-856 10-519 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 8E-46 2.7E-50 436.8 38.3 472 129-683 26-514 (549)
17 4eco_A Uncharacterized protein 100.0 1.5E-47 5E-52 456.9 19.6 327 442-850 239-603 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 6.1E-44 2.1E-48 428.7 44.1 521 159-850 54-583 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-45 6.6E-50 430.3 26.8 457 209-851 3-485 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-45 1.6E-49 427.1 29.0 459 132-683 3-485 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 2.8E-44 9.6E-49 434.8 26.8 439 329-852 323-845 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 8E-42 2.7E-46 410.2 37.2 512 129-680 52-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-42 1.5E-46 405.4 26.8 462 206-853 31-516 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-41 6.7E-46 399.7 31.3 459 131-684 33-515 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.3E-40 4.4E-45 382.7 29.3 378 404-858 13-419 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 3.5E-40 1.2E-44 376.0 23.0 420 255-853 11-435 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 8.3E-39 2.8E-43 367.6 28.9 384 332-828 13-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 3.9E-39 1.3E-43 367.3 23.6 390 329-853 11-417 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-38 5.9E-43 344.7 18.7 294 36-388 2-302 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-36 3.7E-41 347.4 24.4 355 374-853 39-393 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.7E-40 339.2 30.1 356 124-589 37-392 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 3.8E-36 1.3E-40 347.4 23.9 343 454-873 15-359 (477)
33 1o6v_A Internalin A; bacterial 100.0 9E-35 3.1E-39 334.3 32.3 324 425-849 67-390 (466)
34 1o6v_A Internalin A; bacterial 100.0 1.7E-34 5.9E-39 332.0 33.6 328 399-829 66-393 (466)
35 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-36 2.5E-40 324.0 20.5 258 548-880 51-313 (313)
36 3oja_B Anopheles plasmodium-re 100.0 6.6E-34 2.3E-38 337.2 28.0 334 450-874 51-384 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 1.2E-33 4.1E-38 317.4 27.7 335 425-874 44-378 (390)
38 2id5_A Lingo-1, leucine rich r 100.0 7.2E-34 2.5E-38 328.3 25.4 271 404-679 14-285 (477)
39 3o6n_A APL1; leucine-rich repe 100.0 4.7E-32 1.6E-36 304.4 29.2 313 127-466 43-355 (390)
40 4fmz_A Internalin; leucine ric 100.0 1.2E-31 4.3E-36 296.0 28.5 304 425-847 43-346 (347)
41 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-34 4.7E-39 333.0 3.1 377 401-848 3-441 (461)
42 3oja_B Anopheles plasmodium-re 100.0 1.1E-31 3.6E-36 318.2 26.9 311 426-826 51-361 (597)
43 4fmz_A Internalin; leucine ric 100.0 4.8E-31 1.7E-35 291.3 30.1 307 397-823 40-346 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-30 6.2E-35 284.6 24.4 288 451-845 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-30 1.8E-34 280.9 24.6 249 427-686 34-284 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.3E-34 277.7 27.3 289 451-845 32-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 1.8E-29 6E-34 276.6 27.4 252 425-686 30-283 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.4E-32 8.2E-37 314.3 1.0 377 279-680 3-441 (461)
49 4fcg_A Uncharacterized protein 100.0 2.1E-30 7.2E-35 282.7 14.4 284 35-390 22-314 (328)
50 3ogk_B Coronatine-insensitive 100.0 6.8E-30 2.3E-34 303.7 6.8 380 399-848 110-527 (592)
51 3ogk_B Coronatine-insensitive 100.0 4.1E-30 1.4E-34 305.6 4.6 347 425-844 163-548 (592)
52 4fcg_A Uncharacterized protein 100.0 5.9E-28 2E-32 263.4 19.6 234 522-847 80-314 (328)
53 2z66_A Variable lymphocyte rec 100.0 2.3E-27 7.9E-32 256.8 22.3 251 502-851 10-265 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 5.4E-28 1.8E-32 267.4 17.4 183 500-682 53-238 (353)
55 2z80_A TOLL-like receptor 2, v 100.0 3.8E-28 1.3E-32 268.6 15.5 280 497-852 29-319 (353)
56 2z66_A Variable lymphocyte rec 100.0 7.2E-28 2.5E-32 260.8 16.7 198 478-679 10-212 (306)
57 1wwl_A Monocyte differentiatio 99.9 2E-28 6.7E-33 265.6 5.0 206 569-849 93-311 (312)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-28 8.8E-33 265.3 5.7 265 504-853 15-282 (317)
59 3zyi_A Leucine-rich repeat-con 99.9 7.3E-26 2.5E-30 259.0 25.3 247 502-848 57-304 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 8.7E-26 3E-30 257.4 25.4 248 501-848 45-293 (440)
61 1wwl_A Monocyte differentiatio 99.9 4.6E-28 1.6E-32 262.7 5.6 254 472-824 40-310 (312)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-26 5.6E-31 247.3 17.3 254 502-853 14-267 (285)
63 2p1m_B Transport inhibitor res 99.9 2.5E-29 8.6E-34 298.9 -5.1 408 124-560 61-519 (594)
64 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-26 7.2E-31 246.4 17.9 210 571-852 32-243 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.9 8.9E-28 3E-32 261.1 6.9 249 498-831 33-284 (317)
66 3zyj_A Leucine-rich repeat-con 99.9 2.4E-25 8.3E-30 253.7 24.7 199 476-679 44-244 (440)
67 3zyi_A Leucine-rich repeat-con 99.9 2.6E-25 8.9E-30 254.4 24.2 200 476-680 55-256 (452)
68 2p1m_B Transport inhibitor res 99.9 3.2E-28 1.1E-32 289.4 -0.6 396 375-845 103-542 (594)
69 3g06_A SSPH2 (leucine-rich rep 99.9 5.3E-25 1.8E-29 258.1 26.5 242 499-852 61-302 (622)
70 3oja_A Leucine-rich immune mol 99.9 1E-26 3.5E-31 267.5 10.5 234 524-842 35-270 (487)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-25 5.4E-30 262.5 20.7 268 427-834 41-308 (622)
72 3oja_A Leucine-rich immune mol 99.9 7.2E-26 2.4E-30 260.4 13.2 237 497-818 32-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 8E-24 2.7E-28 225.2 20.2 228 527-853 11-243 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 2.3E-23 7.7E-28 221.7 21.1 229 503-827 11-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 3E-23 1E-27 219.8 21.9 215 76-315 2-216 (270)
76 3rfs_A Internalin B, repeat mo 99.9 4.8E-23 1.6E-27 218.4 16.6 202 570-853 40-241 (272)
77 3rfs_A Internalin B, repeat mo 99.9 2.9E-23 1E-27 220.1 14.5 198 451-678 20-217 (272)
78 3goz_A Leucine-rich repeat-con 99.9 4.1E-24 1.4E-28 236.8 7.7 176 504-679 3-209 (362)
79 2o6q_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 210.9 22.6 205 573-851 18-222 (270)
80 3goz_A Leucine-rich repeat-con 99.9 9.4E-24 3.2E-28 233.9 7.7 257 527-851 2-301 (362)
81 1p9a_G Platelet glycoprotein I 99.9 5.3E-22 1.8E-26 212.1 20.8 201 570-848 9-209 (290)
82 2ca6_A RAN GTPase-activating p 99.9 2.9E-24 9.9E-29 240.5 2.2 248 515-851 24-320 (386)
83 2ca6_A RAN GTPase-activating p 99.9 5.6E-24 1.9E-28 238.1 3.6 187 491-677 24-255 (386)
84 3m19_A Variable lymphocyte rec 99.9 5.4E-22 1.9E-26 207.7 17.2 213 594-882 14-232 (251)
85 1p9a_G Platelet glycoprotein I 99.9 1.8E-21 6E-26 208.0 20.0 202 592-872 8-210 (290)
86 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.9E-27 223.0 10.5 250 501-853 49-312 (336)
87 4glp_A Monocyte differentiatio 99.9 2.3E-22 7.7E-27 217.7 12.1 203 572-848 92-308 (310)
88 3m19_A Variable lymphocyte rec 99.9 2.3E-21 8E-26 202.8 19.1 192 77-294 3-194 (251)
89 2ast_B S-phase kinase-associat 99.9 2.1E-22 7.1E-27 220.9 8.2 253 402-688 48-315 (336)
90 4glp_A Monocyte differentiatio 99.9 1.4E-21 4.9E-26 211.4 12.6 201 475-680 91-308 (310)
91 1h6u_A Internalin H; cell adhe 99.8 1.5E-20 5E-25 202.9 17.7 126 521-679 39-164 (308)
92 2xwt_C Thyrotropin receptor; s 99.8 6.6E-21 2.3E-25 197.9 13.6 38 786-823 179-218 (239)
93 1h6u_A Internalin H; cell adhe 99.8 3.1E-20 1.1E-24 200.4 17.7 193 570-849 40-232 (308)
94 2xwt_C Thyrotropin receptor; s 99.8 2.8E-20 9.5E-25 193.1 14.8 195 476-676 32-236 (239)
95 3cvr_A Invasion plasmid antige 99.8 7.9E-20 2.7E-24 211.5 16.1 114 548-679 60-173 (571)
96 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.6E-24 200.2 16.0 219 161-411 13-233 (350)
97 3cvr_A Invasion plasmid antige 99.8 7E-20 2.4E-24 211.9 15.3 188 476-690 60-254 (571)
98 2o6s_A Variable lymphocyte rec 99.8 3.1E-19 1E-23 181.0 16.5 87 593-679 75-161 (208)
99 2o6s_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 182.5 14.0 174 598-853 11-184 (208)
100 4ay9_X Follicle-stimulating ho 99.8 4.1E-19 1.4E-23 195.5 16.2 243 404-677 12-257 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-19 6.5E-24 183.9 11.4 157 621-852 14-171 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 4.8E-18 1.6E-22 173.4 15.5 87 763-849 81-167 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 4.8E-18 1.6E-22 173.4 15.2 156 597-827 14-170 (220)
104 1h6t_A Internalin B; cell adhe 99.8 9.1E-18 3.1E-22 179.4 16.5 170 593-848 45-214 (291)
105 3e6j_A Variable lymphocyte rec 99.7 1.2E-17 4.1E-22 171.7 16.3 156 620-851 21-176 (229)
106 3e6j_A Variable lymphocyte rec 99.7 2.6E-17 9E-22 169.2 18.0 136 158-296 41-176 (229)
107 1dce_A Protein (RAB geranylger 99.7 2.4E-20 8.2E-25 217.2 -5.6 60 764-825 488-548 (567)
108 2xot_A Amphoterin-induced prot 99.7 4.4E-18 1.5E-22 188.0 12.0 104 574-679 21-125 (361)
109 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 5.8E-22 169.4 15.3 153 597-824 14-166 (220)
110 1dce_A Protein (RAB geranylger 99.7 4.7E-20 1.6E-24 214.8 -4.9 217 496-817 346-567 (567)
111 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.3E-22 195.4 14.5 192 450-681 21-212 (605)
112 1h6t_A Internalin B; cell adhe 99.7 3.4E-17 1.2E-21 174.9 15.7 170 125-315 42-211 (291)
113 1w8a_A SLIT protein; signaling 99.7 1.3E-17 4.4E-22 166.3 10.0 113 762-874 54-166 (192)
114 1m9s_A Internalin B; cell inva 99.7 2.9E-17 9.9E-22 192.3 14.1 193 425-633 20-212 (605)
115 4ezg_A Putative uncharacterize 99.7 2.3E-17 7.9E-22 165.4 11.3 155 615-848 41-195 (197)
116 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.4E-22 172.7 12.1 171 592-849 17-187 (263)
117 4b8c_D Glucose-repressible alc 99.7 4.7E-18 1.6E-22 204.2 6.4 225 499-824 173-405 (727)
118 2xot_A Amphoterin-induced prot 99.7 7.2E-17 2.4E-21 178.3 14.5 175 502-679 21-202 (361)
119 4b8c_D Glucose-repressible alc 99.7 3.6E-18 1.2E-22 205.3 4.3 227 523-852 173-409 (727)
120 4ezg_A Putative uncharacterize 99.7 7.6E-17 2.6E-21 161.6 12.1 154 592-824 42-195 (197)
121 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.3E-21 159.1 11.0 132 621-827 11-143 (192)
122 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.5E-21 166.9 9.8 170 474-681 18-187 (263)
123 3sb4_A Hypothetical leucine ri 99.6 3.2E-16 1.1E-20 170.8 8.9 102 351-481 225-327 (329)
124 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.5E-20 146.7 10.6 85 763-847 72-160 (168)
125 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 145.0 14.1 88 763-850 55-142 (193)
126 3sb4_A Hypothetical leucine ri 99.6 6.8E-15 2.3E-19 160.2 12.1 276 400-689 24-320 (329)
127 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 142.4 13.1 90 763-852 53-142 (177)
128 2je0_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 142.3 8.3 80 763-842 65-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 2.6E-14 8.8E-19 142.3 13.8 129 621-825 13-141 (193)
130 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.5E-19 140.0 11.7 131 523-655 24-160 (168)
131 2o6r_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 139.4 13.0 133 620-827 9-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.2E-19 136.6 10.5 127 523-674 17-148 (149)
133 4fdw_A Leucine rich hypothetic 99.5 4E-13 1.4E-17 149.4 21.2 264 128-412 112-381 (401)
134 1ds9_A Outer arm dynein; leuci 99.5 2.4E-16 8.2E-21 158.1 -4.6 155 614-847 14-185 (198)
135 4fs7_A Uncharacterized protein 99.5 1.2E-12 3.9E-17 146.4 20.4 315 196-556 61-375 (394)
136 4fs7_A Uncharacterized protein 99.5 1.6E-12 5.3E-17 145.3 21.4 334 118-504 60-393 (394)
137 4fdw_A Leucine rich hypothetic 99.5 1.4E-12 4.9E-17 144.9 20.1 268 229-560 111-383 (401)
138 1ds9_A Outer arm dynein; leuci 99.4 4.8E-15 1.6E-19 148.5 -3.4 131 542-679 43-185 (198)
139 3g39_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 128.9 11.5 91 763-853 31-121 (170)
140 1a9n_A U2A', U2A'; complex (nu 99.4 9.7E-13 3.3E-17 128.9 10.5 63 615-679 85-153 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.6E-17 128.6 10.4 133 518-656 14-154 (176)
142 2r9u_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 125.9 11.4 90 763-852 34-123 (174)
143 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 120.7 11.3 106 765-873 15-121 (174)
144 4gt6_A Cell surface protein; l 99.3 2.9E-10 1E-14 126.8 23.9 311 196-557 53-367 (394)
145 3g39_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 119.1 11.8 108 574-683 12-119 (170)
146 4gt6_A Cell surface protein; l 99.2 6.6E-10 2.3E-14 123.9 23.0 321 117-485 51-388 (394)
147 3un9_A NLR family member X1; l 99.2 2.3E-12 7.9E-17 141.8 1.2 136 425-560 71-224 (372)
148 2ifg_A High affinity nerve gro 99.1 8.4E-11 2.9E-15 128.9 10.8 87 762-849 31-118 (347)
149 3un9_A NLR family member X1; l 99.1 4E-12 1.4E-16 139.9 -0.2 143 523-665 101-262 (372)
150 2ifg_A High affinity nerve gro 99.1 1.2E-10 4.2E-15 127.5 10.0 105 766-872 12-118 (347)
151 4h09_A Hypothetical leucine ri 98.9 4.8E-08 1.7E-12 108.2 22.2 95 424-522 261-355 (379)
152 4h09_A Hypothetical leucine ri 98.8 9.4E-08 3.2E-12 105.8 19.9 318 175-548 40-357 (379)
153 2ra8_A Uncharacterized protein 98.8 5E-09 1.7E-13 114.1 6.5 157 516-677 165-341 (362)
154 3rw6_A Nuclear RNA export fact 98.7 7.6E-10 2.6E-14 114.2 -1.1 82 178-261 167-257 (267)
155 2ra8_A Uncharacterized protein 98.7 6.5E-09 2.2E-13 113.2 4.6 166 610-845 164-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.4 9.9E-08 3.4E-12 93.6 3.6 70 125-194 32-106 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.9E-07 1.3E-11 93.9 5.0 67 783-851 167-237 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 5.3E-07 1.8E-11 88.4 3.4 86 594-679 65-164 (185)
159 3e4g_A ATP synthase subunit S, 97.6 1.6E-05 5.4E-10 75.8 2.5 82 130-216 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.5 5.6E-05 1.9E-09 72.0 4.2 34 256-289 62-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00018 6.2E-09 69.9 3.7 91 125-215 37-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.6 0.001 3.5E-08 64.5 3.8 61 230-290 97-168 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0033 1.1E-07 56.9 6.4 56 766-823 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0039 1.3E-07 56.5 6.4 58 789-848 11-69 (130)
165 2lz0_A Uncharacterized protein 49.8 17 0.00058 30.4 4.4 42 221-263 10-51 (100)
166 2lz0_A Uncharacterized protein 44.8 22 0.00075 29.7 4.3 48 114-166 5-52 (100)
167 3ox7_P MH027; urokinase-type p 20.8 23 0.00077 19.6 0.1 9 77-85 6-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-95 Score=891.19 Aligned_cols=718 Identities=32% Similarity=0.477 Sum_probs=562.7
Q ss_pred cCCCCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeecCCCCcEEEEecCCCCccccccccc
Q 043567 32 HGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNY 111 (911)
Q Consensus 32 ~~~~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~ 111 (911)
+++..+.++||+|||+||+++. ||. .+++|+.+ ++||+|+||+|+ +|||+++||++..+ .
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~------~~~-~l~~W~~~----~~~C~w~gv~C~--~~~v~~L~L~~~~l--~----- 63 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP------DKN-LLPDWSSN----KNPCTFDGVTCR--DDKVTSIDLSSKPL--N----- 63 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS------CTT-SSTTCCTT----SCGGGSTTEEEE--TTEEEEEECTTSCC--C-----
T ss_pred CccccCCHHHHHHHHHHHhhCC------Ccc-cccCCCCC----CCCcCCcceEEC--CCcEEEEECCCCCc--C-----
Confidence 3444568899999999999994 566 89999854 799999999998 68999999998875 1
Q ss_pred ccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchh--hhcCCCCCCEEEcC
Q 043567 112 TYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFL--YLNALTSLTTLILR 189 (911)
Q Consensus 112 ~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls 189 (911)
|. +..+. ..+..+++|+.++++.+.+.. .+ ..++++++|++|||++|.+.+.+|. .++++++|++|+|+
T Consensus 64 --g~-~~~l~-~~l~~L~~L~~l~~~~~~~~~-l~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls 134 (768)
T 3rgz_A 64 --VG-FSAVS-SSLLSLTGLESLFLSNSHING-SV----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134 (768)
T ss_dssp --EE-HHHHH-HHTTTCTTCCEEECTTSCEEE-CC----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC
T ss_pred --Cc-cCccC-hhHhccCcccccCCcCCCcCC-Cc----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc
Confidence 11 00121 356778888888888876643 22 5789999999999999999988888 89999999999999
Q ss_pred CcccCCccChhhhcCCCCCCEEeCCCCCCCCccCccc--ccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcC
Q 043567 190 ENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQG--ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267 (911)
Q Consensus 190 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~--~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 267 (911)
+|.+.+.++...+.++++|++||+++|.+++..+... +.++++|++|++++|.+++..| +..+++|++|++++|.+
T Consensus 135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 212 (768)
T 3rgz_A 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212 (768)
T ss_dssp SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCC
T ss_pred CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcC
Confidence 9999887775555889999999999999986555421 6888999999999999887655 37888999999999998
Q ss_pred CccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChh
Q 043567 268 SGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF 347 (911)
Q Consensus 268 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~ 347 (911)
++.+|. ++++++|++|++++|.+++.+| ..+.++++|+
T Consensus 213 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~---------------------------------------- 250 (768)
T 3rgz_A 213 STGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELK---------------------------------------- 250 (768)
T ss_dssp CSCCCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCC----------------------------------------
T ss_pred CCCCcc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCC----------------------------------------
Confidence 887776 8888999999999988887666 3444444444
Q ss_pred hhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCC-CCCccEEEccCCcCCcCCChhHHHhcc
Q 043567 348 LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDK-HDFLHHLDISSNNFTGKLPQDMGIILQ 426 (911)
Q Consensus 348 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~ls~n~l~~~ip~~~~~~l~ 426 (911)
+|++++|.+++.+|.. .+++|++|++++|.+++..+..... +++|++|++++|.+++.+|..+.. ++
T Consensus 251 --------~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~ 318 (768)
T 3rgz_A 251 --------LLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CS 318 (768)
T ss_dssp --------EEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CT
T ss_pred --------EEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CC
Confidence 4444444444444432 4455555555555555443333322 366777777777777777777754 78
Q ss_pred CCcEEEcccCccccccchh-hhcCCCCcEEeccCcccCCcccHHHHhccc-ccceeeccCcccccccCCCCCC--CCCCC
Q 043567 427 KLLYMDMSNNHFEGNIASS-IAEMKELRFLDLSKNNFSGELSAALLTSCF-SLLWLGLSDNNFYGRIFPGYMN--LTQLQ 502 (911)
Q Consensus 427 ~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~ 502 (911)
+|++|++++|.++|.+|.. +..+++|++|++++|+++|.+|..+. .++ +|+.|++++|.+++.+++.+.. +++|+
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 8888888888888777765 77888888888888888877777654 444 8888888888888888877766 78899
Q ss_pred EEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcc
Q 043567 503 YLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY 582 (911)
Q Consensus 503 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~ 582 (911)
+|++++|++++.+|..+..+++|++|++++|++++.+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|+
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 99999999988888888889999999999999988888889999999999999999998899889899999999999999
Q ss_pred cccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh
Q 043567 583 LSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ 661 (911)
Q Consensus 583 l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~ 661 (911)
+++.+|..+ ++++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..++.+++|++|++++|+++|.+|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 998888877 8889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCeEEcCCC---------c-------------CCCCCCcccccccccccCCccccccccchhhhhccccccccc
Q 043567 662 ICQLTGLGMMDLSHN---------K-------------FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIY 719 (911)
Q Consensus 662 l~~l~~L~~L~Ls~N---------~-------------l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~ 719 (911)
+.....+..+++..+ . +.|.+|..+..+.. ...+++....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------~~~~~l~~~~-- 619 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST----------------RNPCNITSRV-- 619 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG----------------TCCSCTTSCE--
T ss_pred Hhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc----------------ccccccccce--
Confidence 888776655544431 1 11222222211110 0000000000
Q ss_pred cccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCC
Q 043567 720 YSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS 799 (911)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~ 799 (911)
+ .+.. ......++.|+.||||+|+++|.||.+|+++++|+.|||++|+++
T Consensus 620 ---------------------------~--~g~~-~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 620 ---------------------------Y--GGHT-SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp ---------------------------E--EEEC-CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ---------------------------e--cccC-chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 0 0000 001134678999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCccCccccCCCCCCCCCccCCCC
Q 043567 800 ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC 879 (911)
Q Consensus 800 g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c 879 (911)
|.||+.++++++|++||||+|+++|.||..++++++|++||||+|+++|+||+++||.+|...+|.|||+|||+|+. +|
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C 748 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 748 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CC
T ss_pred CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred CCCCC
Q 043567 880 NGVEE 884 (911)
Q Consensus 880 ~~~~~ 884 (911)
....+
T Consensus 749 ~~~~~ 753 (768)
T 3rgz_A 749 DPSNA 753 (768)
T ss_dssp CSCC-
T ss_pred CCCcc
Confidence 76544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-73 Score=696.12 Aligned_cols=656 Identities=30% Similarity=0.392 Sum_probs=527.9
Q ss_pred CCCEEeCCCCCCCcc---cCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccCh-hhhcCC
Q 043567 130 ELQSLDLSNNSFEGV---YENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTK-QGLSKL 205 (911)
Q Consensus 130 ~L~~L~Ls~n~l~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l 205 (911)
+++.|||+++.+.|. ++ ..+.++++|+.++++.+.+. .+|..++++++|++|+|++|.+.|.+|. ..++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred cEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC
Confidence 456788888888776 55 56777777887777777654 2456677777777777777777766652 156777
Q ss_pred CCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcc---cCCCCCCcEEEccCCcCCccCcccccCCCCCC
Q 043567 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC---LNNMTRLKVLDISFNQLSGSFPSIISNLTSLE 282 (911)
Q Consensus 206 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 282 (911)
++|++|++++|.+++.+|...+.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..|. ..+++|+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~ 203 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLE 203 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCC
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCC
Confidence 777777777777766666544466677777777777666665555 56666666666666666654442 5566666
Q ss_pred eeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCC
Q 043567 283 YLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN 362 (911)
Q Consensus 283 ~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n 362 (911)
+|++++|.+++.+| .+..+++|++|++++|
T Consensus 204 ~L~Ls~n~l~~~~~--------------------------------------------------~l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 204 FLDVSSNNFSTGIP--------------------------------------------------FLGDCSALQHLDISGN 233 (768)
T ss_dssp EEECCSSCCCSCCC--------------------------------------------------BCTTCCSCCEEECCSS
T ss_pred EEECcCCcCCCCCc--------------------------------------------------ccccCCCCCEEECcCC
Confidence 66666666654443 2445567788888889
Q ss_pred CCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCcccccc
Q 043567 363 DLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNI 442 (911)
Q Consensus 363 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~ 442 (911)
.+++.+|..+ .++++|++|++++|.+.+.. +...+++|++|++++|.++|.+|..++..+++|++|++++|.+++.+
T Consensus 234 ~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 234 KLSGDFSRAI-STCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CCCSCHHHHT-TTCSSCCEEECCSSCCEESC--CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred cCCCcccHHH-hcCCCCCEEECCCCcccCcc--CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 9988877754 58999999999999998764 33489999999999999999999998765699999999999999999
Q ss_pred chhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCC-CCCEEEccCccccccccccccC
Q 043567 443 ASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLT-QLQYLYLENNKFSGKIEEGLLK 521 (911)
Q Consensus 443 p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~ 521 (911)
|..++.+++|++|++++|+++|.+|...+..+++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|..+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 999999999999999999999999998888999999999999999999999999887 9999999999999999988877
Q ss_pred --CCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccE
Q 043567 522 --SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEH 598 (911)
Q Consensus 522 --l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~ 598 (911)
+++|++|++++|++++.+|..++++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+ .+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred EEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcC
Q 043567 599 LYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF 678 (911)
Q Consensus 599 L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 678 (911)
|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..++++++|+.|++++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccC
Q 043567 679 NGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNG 758 (911)
Q Consensus 679 ~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (911)
+|.+|..+............. ......+..... ... .......+.+. .......
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------------~~~--------~~~~~~~~~~~---~~~~~~~ 604 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIA--GKRYVYIKNDGM-------------KKE--------CHGAGNLLEFQ---GIRSEQL 604 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTC--SCEEEEEECCSC-------------CTT--------CCSSEEEEECT---TCCGGGG
T ss_pred CCcCChHHhcccchhhhhccc--cccccccccccc-------------ccc--------ccccccccccc---cccchhh
Confidence 999999887754322211110 000000000000 000 00000000000 0000001
Q ss_pred CcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCe
Q 043567 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSN 838 (911)
Q Consensus 759 ~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 838 (911)
..++.+..++++.|.++|.+|..++.+++|++|||++|+++|.||.+++++++|+.|||++|+++|.||..+++++.|++
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 22345566889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcCeecCCCC-CCCCccCccccCCCCCCCC
Q 043567 839 FNVSYNNLSGLIPDK-GQFATFDESSYRGNLHLCG 872 (911)
Q Consensus 839 L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg 872 (911)
||||+|+++|.||.. +.+..+....+.+|+ +.|
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g 718 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSG 718 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEE
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCc-ccc
Confidence 999999999999976 445555555555664 443
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-58 Score=559.14 Aligned_cols=610 Identities=21% Similarity=0.214 Sum_probs=403.4
Q ss_pred EEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEe
Q 043567 133 SLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD 212 (911)
Q Consensus 133 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 212 (911)
.+|++++.++..+. .+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+ ..|.++++|++|+
T Consensus 8 ~~~cs~~~L~~ip~-----~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 8 VADCSHLKLTQVPD-----DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLN 79 (680)
T ss_dssp EEECCSSCCSSCCS-----CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEE
T ss_pred eeECCCCCcccccc-----ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEE
Confidence 45555555544322 222 566777777777666666667777777777777777664444 5566777777777
Q ss_pred CCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCC
Q 043567 213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292 (911)
Q Consensus 213 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 292 (911)
+++|.++ .+|...|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.++
T Consensus 80 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 80 LQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 7777776 455545677777777777777776665566777777777777777777666666777777777777777766
Q ss_pred CccChhhhc--ccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCC-ChhhhccCCCCEEECCCCCCCCCCc
Q 043567 293 GTFPLSSLA--NHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI-PPFLLHQFDLKYLDLSHNDLDGAFP 369 (911)
Q Consensus 293 ~~~p~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p 369 (911)
+..+ ..+. .+++| ++|++++|.+..+ |..+..+.+|+.|+++++.+.+...
T Consensus 159 ~~~~-~~~~~~~~~~L-------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 159 ALKS-EELDIFANSSL-------------------------KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CBCH-HHHGGGTTCEE-------------------------SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred ccCH-HHhhccccccc-------------------------cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence 4333 2222 12233 3333333333222 2233344445555555554432111
Q ss_pred hhhh--hcCCcccEEEccCCccccccCCCCCCCC--CccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchh
Q 043567 370 TWAL--QNNTKLEVLLLTNNSFTGNLQLPDDKHD--FLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASS 445 (911)
Q Consensus 370 ~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 445 (911)
..+. ...++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..|..+. .+++|++|++++|.+++..|..
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 291 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHS 291 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTT
T ss_pred HHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhh
Confidence 1110 0124455555555544443322232222 255555555555544444443 3566666666666666666666
Q ss_pred hhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCC
Q 043567 446 IAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525 (911)
Q Consensus 446 l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 525 (911)
+..+++|++|++++|...+.++.. .+.......+..+++|++|++++|++++..+..+..+++|
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 355 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLA----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC----------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred hcCCCCccEEeccchhhhcccccc----------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence 666666666666655443322210 0111111256677788888888888887777777778888
Q ss_pred cEEECcCCcCccc--CCcCccCc--CCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccC-ccc-ccccccEE
Q 043567 526 VELRMSSNMLSGH--IPHWMGNL--SYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMT-TSF-NISSVEHL 599 (911)
Q Consensus 526 ~~L~Ls~n~l~~~--~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~-~~~-~~~~L~~L 599 (911)
++|++++|.+.+. .+..+..+ ++|+.|++++|++++..|..+..+++|++|++++|.+.+.+| ..+ .+++|++|
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L 435 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEE
T ss_pred cEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEE
Confidence 8888888775432 12233332 578888888888887778888888888888888888887665 344 78888899
Q ss_pred EcccCcccccccccccCCCCCCEEeCCCCccc--ccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567 600 YLQKNSLSGPIPIALFRSSNLLTLDLRDNGFS--GVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK 677 (911)
Q Consensus 600 ~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 677 (911)
++++|++++..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus 436 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp ECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence 99999888888888889999999999999887 5788899999999999999999998778889999999999999999
Q ss_pred CCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeecc
Q 043567 678 FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN 757 (911)
Q Consensus 678 l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (911)
+++..+..+.... ...
T Consensus 516 l~~~~~~~~~~~~----------------------------------------------------------------~~~ 531 (680)
T 1ziw_A 516 LARLWKHANPGGP----------------------------------------------------------------IYF 531 (680)
T ss_dssp CGGGGSTTSTTSC----------------------------------------------------------------CCT
T ss_pred ccccchhhccCCc----------------------------------------------------------------chh
Confidence 8753322111000 000
Q ss_pred CCcCccccEEEcccCcccccCC-ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCC-CCCC
Q 043567 758 GSNLDYMVGLDLSCNKLTGEIP-SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT-ELNF 835 (911)
Q Consensus 758 ~~~l~~L~~LdLs~N~l~g~ip-~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~ 835 (911)
...++.|+.|||++|+++ .+| ..++++++|++|+|++|++++..|..|.++++|+.|||++|++++..|..+. .++.
T Consensus 532 ~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610 (680)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred hcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence 123568899999999999 555 5689999999999999999987777889999999999999999998887776 7889
Q ss_pred CCeEeccCCcCeecCCCCCCCCcc
Q 043567 836 LSNFNVSYNNLSGLIPDKGQFATF 859 (911)
Q Consensus 836 L~~L~ls~N~l~g~iP~~~~~~~~ 859 (911)
|+++++++|++.+..+....|..+
T Consensus 611 L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 611 LTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp CSEEECTTCCCCBCCCCCSSEECC
T ss_pred cCEEEccCCCcccCCccHHHHHHH
Confidence 999999999999987653334333
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-58 Score=555.79 Aligned_cols=584 Identities=21% Similarity=0.227 Sum_probs=451.4
Q ss_pred cEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEecc
Q 043567 160 KILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239 (911)
Q Consensus 160 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 239 (911)
+.+|++++.++. +|..+. +++++|++++|.+++ ++...|.++++|++|++++|.+++..| ..|+++++|++|+|+
T Consensus 7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECC
T ss_pred CeeECCCCCccc-cccccC--CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECC
Confidence 568888888863 555554 789999999999885 444678899999999999999985444 468889999999999
Q ss_pred CCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcccc
Q 043567 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ 319 (911)
Q Consensus 240 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~ 319 (911)
+|.+++..+..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..| ..+.++
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l---------------- 144 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQL---------------- 144 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCC----------------
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhccc----------------
Confidence 999988655678999999999999999987777888999999999999998875544 233333
Q ss_pred ccccCcCCCCCceEEECCCCCCCCCChhh---hccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCC
Q 043567 320 VQTENFLPTFQLKVLRLPNCSLNVIPPFL---LHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLP 396 (911)
Q Consensus 320 ~~~~~~~~~~~L~~L~L~~n~l~~ip~~l---~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 396 (911)
++|++|++++|.+..+++.. ..+++|++|++++|.+++..|. .+..+++|+.|++.++.+.
T Consensus 145 ---------~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~------ 208 (680)
T 1ziw_A 145 ---------ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLG------ 208 (680)
T ss_dssp ---------TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCH------
T ss_pred ---------ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccC------
Confidence 34444444555555544332 2335666666666666644433 2335555555555544433
Q ss_pred CCCCCCccEEEccCCcCCcCCChhHHH--hccCCcEEEcccCccccccchhhhcCCC--CcEEeccCcccCCcccHHHHh
Q 043567 397 DDKHDFLHHLDISSNNFTGKLPQDMGI--ILQKLLYMDMSNNHFEGNIASSIAEMKE--LRFLDLSKNNFSGELSAALLT 472 (911)
Q Consensus 397 ~~~~~~L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~g~i~~~~~~ 472 (911)
+.....+.. ..++|++|++++|.+++..|..+..++. |++|++++|++++..+ ..+.
T Consensus 209 ------------------~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~ 269 (680)
T 1ziw_A 209 ------------------PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFA 269 (680)
T ss_dssp ------------------HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTT
T ss_pred ------------------hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-cccc
Confidence 221111111 1367777777777777777777776654 7788887777764333 3346
Q ss_pred cccccceeeccCcccccccCCCCCCCCCCCEEEccCccccc-----cccc----cccCCCCCcEEECcCCcCcccCCcCc
Q 043567 473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG-----KIEE----GLLKSKKLVELRMSSNMLSGHIPHWM 543 (911)
Q Consensus 473 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~l 543 (911)
.+++|+.|++++|.+.+..+..+..+++|++|++++|...+ .+|. .+..+++|++|++++|++++..+..+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence 77778888888888877777788888888888888776543 2332 67889999999999999999889999
Q ss_pred cCcCCCcEEEccCccccccc-c-hhhcc--CCCCcEEEccCcccccccCccc-ccccccEEEcccCccccccc-ccccCC
Q 043567 544 GNLSYLEVLLMSKNFFEGNI-P-VQLLN--HRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIP-IALFRS 617 (911)
Q Consensus 544 ~~l~~L~~L~L~~n~l~~~~-p-~~l~~--~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p-~~l~~~ 617 (911)
..+++|++|++++|.+.+.. + ..+.. .++|+.|++++|++++..|..+ .+++|++|++++|++++.+| ..+.++
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 99999999999999865332 2 22332 3689999999999999988888 89999999999999998776 688899
Q ss_pred CCCCEEeCCCCcccccCchhhhcCCCccEEEccCCccc--ccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccC
Q 043567 618 SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLE--GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVG 695 (911)
Q Consensus 618 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~ 695 (911)
++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|..+..
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------- 502 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG------- 502 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-------
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc-------
Confidence 99999999999999998999999999999999999987 678999999999999999999999766655543
Q ss_pred CccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc
Q 043567 696 NLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT 775 (911)
Q Consensus 696 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 775 (911)
++.|+.||+++|+++
T Consensus 503 -----------------------------------------------------------------l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 503 -----------------------------------------------------------------LEKLEILDLQHNNLA 517 (680)
T ss_dssp -----------------------------------------------------------------CTTCCEEECCSSCCG
T ss_pred -----------------------------------------------------------------ccccCEEeCCCCCcc
Confidence 346788999999998
Q ss_pred ccCC--------ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCe
Q 043567 776 GEIP--------SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLS 847 (911)
Q Consensus 776 g~ip--------~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 847 (911)
+..+ ..++++++|++|+|++|+++...+..|+++++|+.|||++|++++..|..+..++.|++|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 6422 34789999999999999999555567999999999999999999877777899999999999999999
Q ss_pred ecCCCC-C-CCCccCccccCCCCCCCC
Q 043567 848 GLIPDK-G-QFATFDESSYRGNLHLCG 872 (911)
Q Consensus 848 g~iP~~-~-~~~~~~~~~~~gn~~lcg 872 (911)
+.+|.. . .+..+....+.|||..|.
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred ccChhHhcccccccCEEEccCCCcccC
Confidence 987753 2 455666677899999995
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-53 Score=507.50 Aligned_cols=522 Identities=22% Similarity=0.180 Sum_probs=343.8
Q ss_pred CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567 129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL 208 (911)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 208 (911)
+.+++||+++|.+++..+ ..|+++++|++|++++|.+.+..|..|.++++|++|+|++|++.+..| ..|.++++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTC
T ss_pred CcCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccc
Confidence 367788888888777666 567777778888888777777777777777777777777777764444 567777777
Q ss_pred CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCC--eeec
Q 043567 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLE--YLAL 286 (911)
Q Consensus 209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L 286 (911)
++|++++|+++ .++...++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+ +|++
T Consensus 108 ~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 77777777776 34333477777777777777777764333444477777777777777766666677777777 6677
Q ss_pred cCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC
Q 043567 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366 (911)
Q Consensus 287 ~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~ 366 (911)
++|.+++..| ......+|++|++++|.
T Consensus 187 ~~n~l~~~~~--------------------------------------------------~~~~~~~L~~L~l~~~~--- 213 (606)
T 3t6q_A 187 NGNDIAGIEP--------------------------------------------------GAFDSAVFQSLNFGGTQ--- 213 (606)
T ss_dssp TTCCCCEECT--------------------------------------------------TTTTTCEEEEEECTTCS---
T ss_pred CCCccCccCh--------------------------------------------------hHhhhccccccccCCch---
Confidence 7776664433 11222234444444443
Q ss_pred CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhcc--CCcEEEcccCccccccch
Q 043567 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ--KLLYMDMSNNHFEGNIAS 444 (911)
Q Consensus 367 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~--~L~~L~Ls~n~l~~~~p~ 444 (911)
.++. .+..+..++...+....+.+ +... .++...+..+. +|++|++++|.+++..+.
T Consensus 214 ~~~~-~~~~l~~~~l~~l~~~~~~~-----------~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 214 NLLV-IFKGLKNSTIQSLWLGTFED-----------MDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp CHHH-HHHHTTTCEEEEEECCCCTT-----------SCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred hHHH-Hhhhccccchhheechhhcc-----------cccc---------ccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 1222 12233333333222221111 0000 11111111111 456666666666655555
Q ss_pred hhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCC
Q 043567 445 SIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKK 524 (911)
Q Consensus 445 ~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 524 (911)
.+..+++|++|++++|+++ . +|..+..+++|++|++++|++++..|..+..+++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~-------------------------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-E-------------------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-C-------------------------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred HhccccCCCEEeccCCccC-C-------------------------CChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 5555566666666555554 2 3344555666677777777666666666666677
Q ss_pred CcEEECcCCcCcccCCc-CccCcCCCcEEEccCccccccc--chhhccCCCCcEEEccCcccccccCcccccccccEEEc
Q 043567 525 LVELRMSSNMLSGHIPH-WMGNLSYLEVLLMSKNFFEGNI--PVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYL 601 (911)
Q Consensus 525 L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L 601 (911)
|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. |..+..+ ++|++|++
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-----------------------~~L~~L~l 383 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-----------------------SHLQSLNL 383 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC-----------------------TTCCEEEC
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC-----------------------CCCCEEEC
Confidence 77777777766655543 3666666666666666665443 3344444 44555555
Q ss_pred ccCcccccccccccCCCCCCEEeCCCCcccccCchh-hhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567 602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQ-INECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG 680 (911)
Q Consensus 602 s~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 680 (911)
++|++.+..|..+..+++|++|++++|++.+..|.. +..+++|++|++++|.+++..|..+..+++|+.|++++|++++
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 555555555666667777777777777777665543 7777888888888888877777778888888888888888765
Q ss_pred CC-C--cccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeecc
Q 043567 681 SI-P--SCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN 757 (911)
Q Consensus 681 ~i-p--~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (911)
.. | ..+.
T Consensus 464 ~~~~~~~~~~---------------------------------------------------------------------- 473 (606)
T 3t6q_A 464 GNIQKTNSLQ---------------------------------------------------------------------- 473 (606)
T ss_dssp GEECSSCGGG----------------------------------------------------------------------
T ss_pred cccccchhhc----------------------------------------------------------------------
Confidence 21 1 1111
Q ss_pred CCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCC
Q 043567 758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS 837 (911)
Q Consensus 758 ~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 837 (911)
.++.|+.|++++|++++.+|..++.+++|+.|+|++|++++.+|+.+++++.| .||+++|++++.+|..+..++.|+
T Consensus 474 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 474 --TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp --GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred --cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence 23577889999999998888999999999999999999999999999999999 999999999988888888899999
Q ss_pred eEeccCCcCeecCCC
Q 043567 838 NFNVSYNNLSGLIPD 852 (911)
Q Consensus 838 ~L~ls~N~l~g~iP~ 852 (911)
++++++|++++..+.
T Consensus 551 ~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 551 TINLRQNPLDCTCSN 565 (606)
T ss_dssp EEECTTCCEECSGGG
T ss_pred EEeCCCCCccccCCc
Confidence 999999999987663
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-53 Score=508.54 Aligned_cols=531 Identities=20% Similarity=0.180 Sum_probs=437.7
Q ss_pred ccceeecCC---------CCcEEEEecCCCCcccccccccccCCcccccccccccCCCCCCEEeCCCCCCCcccCccccc
Q 043567 81 WKGVRCNAT---------TGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYD 151 (911)
Q Consensus 81 w~gv~C~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 151 (911)
+..|.|... ...++.+++++..+ ..+....|..+++|++|+|++|.+.+..+ .
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i--------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~ 75 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVL--------------PTIQNTTFSRLINLTFLDLTRCQIYWIHE----D 75 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCC--------------SEECTTTSTTCTTCSEEECTTCCCCEECT----T
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCcc--------------CcCChhHhccCccceEEECCCCccceeCh----h
Confidence 455778642 24678889888776 34556689999999999999999999877 7
Q ss_pred ccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCC
Q 043567 152 TLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK 231 (911)
Q Consensus 152 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 231 (911)
+|+++++|++|++++|.+.+..|..|+++++|++|++++|++++..+ ..+.++++|++|++++|++++ ++...+..++
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~ 153 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISS-IKLPKGFPTE 153 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCC-CCCCTTCCCT
T ss_pred hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc-chhccCCcccEEECCCCcccc-cCcccccCCc
Confidence 89999999999999999999999999999999999999999985433 568999999999999999985 3222366699
Q ss_pred CCCEEeccCCcCCCCCCcccCCCCCCc--EEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEE
Q 043567 232 NLFVLNLEKNNIEDHLPNCLNNMTRLK--VLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVL 309 (911)
Q Consensus 232 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L 309 (911)
+|++|++++|.+++..|..++.+++|+ .|++++|.+++..|..+.. .+|++|++++|. .++ ..+..+..++..
T Consensus 154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~-~~~~~l~~~~l~ 228 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLL-VIFKGLKNSTIQ 228 (606)
T ss_dssp TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHH-HHHHHTTTCEEE
T ss_pred ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHH-HHhhhccccchh
Confidence 999999999999998888999999999 9999999999877766654 689999999886 222 344455444433
Q ss_pred EecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCC--cccEEEccCC
Q 043567 310 LLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNT--KLEVLLLTNN 387 (911)
Q Consensus 310 ~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~n 387 (911)
.+. +.... .+.. . .++...+..+. +|+.|++++|
T Consensus 229 ~l~-----------------------~~~~~------------~~~~-----~----~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 229 SLW-----------------------LGTFE------------DMDD-----E----DISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp EEE-----------------------CCCCT------------TSCC-----C----CCCGGGGGGGGGSEEEEEECTTC
T ss_pred hee-----------------------chhhc------------cccc-----c----ccChhHhchhhcCceeEEEeecC
Confidence 331 11100 0000 0 11111222222 4666666666
Q ss_pred ccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCccc
Q 043567 388 SFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS 467 (911)
Q Consensus 388 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~ 467 (911)
.+++..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 666554444556777777788888777 7787765 38899999999999998888889999999999999999988888
Q ss_pred HHHHhcccccceeeccCccccccc--CCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCc-Ccc
Q 043567 468 AALLTSCFSLLWLGLSDNNFYGRI--FPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPH-WMG 544 (911)
Q Consensus 468 ~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~ 544 (911)
...+..+++|++|++++|.+.+.. +..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..|. .+.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 877788999999999999998876 77889999999999999999988899999999999999999999977665 489
Q ss_pred CcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccccc---Cccc-ccccccEEEcccCcccccccccccCCCCC
Q 043567 545 NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFM---TTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNL 620 (911)
Q Consensus 545 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~---~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L 620 (911)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+.+.. +..+ .+++|++|++++|++++..|..+..+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 9999999999999999888999999999999999999998732 2334 88999999999999999889999999999
Q ss_pred CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCC
Q 043567 621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683 (911)
Q Consensus 621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip 683 (911)
++|++++|++++..|.++.+++.| +|++++|++++.+|..+..+++|+.+++++|++++..+
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999999 99999999999999999999999999999999987555
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-53 Score=505.71 Aligned_cols=525 Identities=20% Similarity=0.179 Sum_probs=341.3
Q ss_pred CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEE
Q 043567 157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236 (911)
Q Consensus 157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 236 (911)
++|++|++++|.+++..+..|.++++|++|++++|++++..+ ..|.++++|++|+|++|.+++..| ..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEE
Confidence 556666666666666666666667777777777776664333 556777777777777777764334 347777777777
Q ss_pred eccCCcCCCCCCcccCCCCCCcEEEccCCcCCc-cCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN 315 (911)
Q Consensus 237 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~ 315 (911)
++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..| ..++.+++|+.
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~------- 181 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQ------- 181 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTT-------
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhcccc-------
Confidence 777777777666667777777777777777765 457777777777777777777774433 44554444431
Q ss_pred ccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCC
Q 043567 316 NMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQL 395 (911)
Q Consensus 316 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 395 (911)
.++++++++|.+..+++......+|++|++++|.+++......+.+++.|+.+++..+.+.+....
T Consensus 182 --------------~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 182 --------------VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp --------------CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred --------------ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 133556666666666666666667888888888776544444456777777777655444322100
Q ss_pred CCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEc-ccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcc
Q 043567 396 PDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDM-SNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSC 474 (911)
Q Consensus 396 ~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~ 474 (911)
. . +.+..+..+.. -.++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .+
T Consensus 248 ~--------~-------~~~~~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l-------- 300 (606)
T 3vq2_A 248 E--------I-------FEPSIMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YL-------- 300 (606)
T ss_dssp S--------C-------CCGGGGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CC--------
T ss_pred c--------c-------cChHHhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hh--------
Confidence 0 0 00011111110 12333333 33344443333 444444444444444332 11
Q ss_pred cccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEc
Q 043567 475 FSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLM 554 (911)
Q Consensus 475 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 554 (911)
+ .+..+++|++|++++|++ +.+| .+ .+++|++|++++|+..+.+ .+..+++|++|++
T Consensus 301 -----------------~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 357 (606)
T 3vq2_A 301 -----------------E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357 (606)
T ss_dssp -----------------C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred -----------------h-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence 1 344455555666666555 3445 23 5555566665555443332 3445555555555
Q ss_pred cCcccccc--cchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccc
Q 043567 555 SKNFFEGN--IPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG 632 (911)
Q Consensus 555 ~~n~l~~~--~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~ 632 (911)
++|.+++. +|..+..++ +|++|++++|.+++ +|..+..+++|+.|++++|++.+
T Consensus 358 s~n~l~~~~~~~~~~~~~~-----------------------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTN-----------------------SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp CSSCEEEEEECCHHHHCCS-----------------------CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred cCCccCCCcchhhhhccCC-----------------------cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence 55555533 244444444 44555555555442 45666777788888888888887
Q ss_pred cCc-hhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC-CCcccccccccccCCccccccccchhhhh
Q 043567 633 VIP-HQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS-IPSCFTNITLWSVGNLDRYRLEHLTFVER 710 (911)
Q Consensus 633 ~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~~~~~~~~~~~~~~l~~l~~ 710 (911)
..| ..+..+++|++|++++|++++.+|..+..+++|++|++++|++++. +|..+..
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------------- 471 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN---------------------- 471 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc----------------------
Confidence 766 5778888888888888888888888888888888888888888763 4544433
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCE
Q 043567 711 LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPV 790 (911)
Q Consensus 711 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~ 790 (911)
++.|+.||+++|++++.+|..++.+++|++
T Consensus 472 --------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 472 --------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp --------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 346788999999999888999999999999
Q ss_pred EECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCC-CCCeEeccCCcCeecCCC
Q 043567 791 LNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELN-FLSNFNVSYNNLSGLIPD 852 (911)
Q Consensus 791 L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~ 852 (911)
|+|++|++++.+|..++++++|++|||++|+++ .+|..+..++ .|+++++++|++.+..|.
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999999999999999999 6888888887 599999999999987764
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-52 Score=510.50 Aligned_cols=573 Identities=20% Similarity=0.182 Sum_probs=387.8
Q ss_pred EEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEe
Q 043567 133 SLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD 212 (911)
Q Consensus 133 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 212 (911)
..|.+++.++..+ . -.++|++|||++|.+++..+..|.++++|++|+|++|...+.+++..|.++++|++|+
T Consensus 8 ~~dcs~~~L~~vP------~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 8 IAFYRFCNLTQVP------Q--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEESCCCSSCCC------S--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred EEEccCCCCCCCC------C--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 4566666665542 1 2355666666666666655666666666666666666544455445555556666666
Q ss_pred CCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcc--cCCCCCCcEEEccCCcCCccCc-ccccCCCCCCeeeccCC
Q 043567 213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC--LNNMTRLKVLDISFNQLSGSFP-SIISNLTSLEYLALFDN 289 (911)
Q Consensus 213 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n 289 (911)
|++|.+++..| ..|+++++|++|+|++|.+++.+|.. +.++++|++|+|++|.+++..+ ..|+++++|++|++++|
T Consensus 80 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 80 LGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 66555553323 23555555555555555555544333 5555555555555555554432 34555555555555555
Q ss_pred cCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhcc--CCCCEEECCCCCCCCC
Q 043567 290 NFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQ--FDLKYLDLSHNDLDGA 367 (911)
Q Consensus 290 ~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~--~~L~~L~Ls~n~l~~~ 367 (911)
.+++..+ ..+..+ ++|+.|+++.|.+.+.
T Consensus 159 ~i~~~~~-------------------------------------------------~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 159 QIFLVCE-------------------------------------------------HELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp CCCCCCS-------------------------------------------------GGGHHHHHCSSCCCEECCSBSCCC
T ss_pred cCCeeCH-------------------------------------------------HHcccccCCccceEECCCCccccc
Confidence 5543322 122222 4566677777766655
Q ss_pred CchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhc--cCCcEEEcccCccccccchh
Q 043567 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIIL--QKLLYMDMSNNHFEGNIASS 445 (911)
Q Consensus 368 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~p~~ 445 (911)
.|..+. .+++ ++ ....|++|++++|.+++.+|..+...+ .+++.+.++.+.+...
T Consensus 190 ~~~~~~-~~~~-----------------~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---- 246 (844)
T 3j0a_A 190 VSVDWG-KCMN-----------------PF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---- 246 (844)
T ss_dssp CCCCCC-SSSC-----------------TT-TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS----
T ss_pred cccchh-hcCC-----------------cc-ccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc----
Confidence 443211 1110 00 112477777777777777776664322 4566666664432211
Q ss_pred hhcCCCCcEEeccCcccCCcccHHHHhc--ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCC
Q 043567 446 IAEMKELRFLDLSKNNFSGELSAALLTS--CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK 523 (911)
Q Consensus 446 l~~l~~L~~L~Ls~n~l~g~i~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 523 (911)
...+.+.+ +....+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..++
T Consensus 247 -----------~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 247 -----------FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314 (844)
T ss_dssp -----------SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred -----------ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence 11222221 11111222 36788888888888887788888888999999999998888888888888
Q ss_pred CCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEccc
Q 043567 524 KLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK 603 (911)
Q Consensus 524 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~ 603 (911)
+|++|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++... +++|+.|++++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~ 390 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSG 390 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEES
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCC
Confidence 99999999999888888888889999999999998887777778888999999999998876433 67899999999
Q ss_pred CcccccccccccCCCCCCEEeCCCCcccccC-chhhhcCCCccEEEccCCcccccCCh-hhhcCCCCCeEEcCCCcCCCC
Q 043567 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVI-PHQINECSNLRFLLLRGNNLEGQIPN-QICQLTGLGMMDLSHNKFNGS 681 (911)
Q Consensus 604 n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~g~ 681 (911)
|+++ .+|.. ..+++.|++++|++++.- +..+..+++|++|+|++|++++..+. .+..+++|+.|+|++|.+++.
T Consensus 391 N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 391 NKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred CCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 9998 55544 467999999999998642 33467899999999999999865443 355689999999999998744
Q ss_pred CCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcC
Q 043567 682 IPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNL 761 (911)
Q Consensus 682 ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 761 (911)
.+..+..- ....+
T Consensus 467 ~~~~~~~~-------------------------------------------------------------------~~~~l 479 (844)
T 3j0a_A 467 WETELCWD-------------------------------------------------------------------VFEGL 479 (844)
T ss_dssp CCSCCCSS-------------------------------------------------------------------CSSCB
T ss_pred cccccchh-------------------------------------------------------------------hhcCc
Confidence 33211000 00224
Q ss_pred ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567 762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV 841 (911)
Q Consensus 762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 841 (911)
+.|+.|||++|++++.+|..+..+++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..+. .|+++++
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l 554 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDI 554 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEE
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEe
Confidence 5788999999999999999999999999999999999988887776 8999999999999999998765 6889999
Q ss_pred cCCcCeecCCCCCCCCccCccccCCCCCCCCCccCCCCCCC
Q 043567 842 SYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGV 882 (911)
Q Consensus 842 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c~~~ 882 (911)
++|++.+..+. ..|......+|..+||.+....|...
T Consensus 555 ~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 555 THNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp EEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred cCCCccccccc----HHHHHHHHhcCcccccccccCccCCc
Confidence 99999987763 23332233567788888877778643
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-51 Score=491.38 Aligned_cols=537 Identities=19% Similarity=0.183 Sum_probs=393.1
Q ss_pred CCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEc
Q 043567 183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDI 262 (911)
Q Consensus 183 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 262 (911)
.++++.+++.++ .+|.. + .++|++|++++|.++ .++...|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~-~--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDD-I--PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCS-SCCTT-S--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcc-cCCCC-C--CCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 356777777765 45522 2 256777777777776 344445777777777777777777766667777777777777
Q ss_pred cCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC
Q 043567 263 SFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN 342 (911)
Q Consensus 263 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 342 (911)
++|.+++..|..|+++++|++|++++|.+++..+
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---------------------------------------------- 121 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLES---------------------------------------------- 121 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS----------------------------------------------
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccc----------------------------------------------
Confidence 7777776667777777777777777776653222
Q ss_pred CCChhhhccCCCCEEECCCCCCCC-CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCc----cEEEccCCcCCcCC
Q 043567 343 VIPPFLLHQFDLKYLDLSHNDLDG-AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL----HHLDISSNNFTGKL 417 (911)
Q Consensus 343 ~ip~~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~ls~n~l~~~i 417 (911)
..+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..+..+..+++| ++|++++|.++ .+
T Consensus 122 ---~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~ 196 (606)
T 3vq2_A 122 ---FPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FI 196 (606)
T ss_dssp ---SCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EE
T ss_pred ---cccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-ee
Confidence 234455678888899999875 567654 478888888888888776543333333333 36666666666 34
Q ss_pred ChhHHHhccCCcEEEcccCccc-cccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCC
Q 043567 418 PQDMGIILQKLLYMDMSNNHFE-GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM 496 (911)
Q Consensus 418 p~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 496 (911)
|...+. ..+|++|++++|.++ +..|..+.+++.|+.+++..+.+.+.. .+.. +....+..+.
T Consensus 197 ~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---------~l~~-------~~~~~~~~l~ 259 (606)
T 3vq2_A 197 QDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---------NLEI-------FEPSIMEGLC 259 (606)
T ss_dssp CTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC---------CCSC-------CCGGGGTTGG
T ss_pred Cccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCC---------cccc-------cChHHhhhhh
Confidence 444333 236666666666665 345556666666666666544433110 0000 0111122222
Q ss_pred CCCCCCEEEc-cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcE
Q 043567 497 NLTQLQYLYL-ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQL 575 (911)
Q Consensus 497 ~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 575 (911)
.+ .++.+++ ..|.+.+.+|. +..+++|++|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.
T Consensus 260 ~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~ 332 (606)
T 3vq2_A 260 DV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKS 332 (606)
T ss_dssp GS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCE
T ss_pred hc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccce
Confidence 22 4566666 66777777776 777888888888888886 455 777888888888888888 5777 44 8888888
Q ss_pred EEccCcccccccCcccccccccEEEcccCccccc--ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCc
Q 043567 576 FSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP--IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653 (911)
Q Consensus 576 L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 653 (911)
|++++|...+.+ ....+++|++|++++|++++. +|..+..+++|++|++++|.+++ +|..+..+++|++|++++|+
T Consensus 333 L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 333 LTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred eeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 888888655544 223788999999999998876 48889999999999999999985 67889999999999999999
Q ss_pred ccccCC-hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCC
Q 043567 654 LEGQIP-NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE 732 (911)
Q Consensus 654 l~~~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~ 732 (911)
+.+..| ..+..+++|+.|++++|++++.+|..+..+
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------------------------------------- 447 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL------------------------------------------- 447 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-------------------------------------------
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-------------------------------------------
Confidence 998888 688999999999999999998877765443
Q ss_pred CCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccc-cCCccccCCCCCCEEECCCCcCCccccccccccCC
Q 043567 733 ERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG-EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM 811 (911)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 811 (911)
++|+.|++++|++++ .+|..++.+++|++|+|++|++++.+|..++++++
T Consensus 448 -----------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 448 -----------------------------TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp -----------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -----------------------------CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 468889999999998 48999999999999999999999999999999999
Q ss_pred CCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCC-CCCC-ccCccccCCCCCCCCCc
Q 043567 812 IESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK-GQFA-TFDESSYRGNLHLCGPT 874 (911)
Q Consensus 812 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn~~lcg~~ 874 (911)
|++|+|++|++++.+|..+..++.|++|++++|+++ .+|.. ..+. .+....+.|||..|..+
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999999999999999999999 56654 2332 25556688999998543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-53 Score=504.32 Aligned_cols=306 Identities=19% Similarity=0.233 Sum_probs=203.8
Q ss_pred CccEEEccCCc-CCc-CCChhHHH-----hccCCcEEEcccCccccccch--hhhcCCCCcEEeccCcccCCcccHHHHh
Q 043567 402 FLHHLDISSNN-FTG-KLPQDMGI-----ILQKLLYMDMSNNHFEGNIAS--SIAEMKELRFLDLSKNNFSGELSAALLT 472 (911)
Q Consensus 402 ~L~~L~ls~n~-l~~-~ip~~~~~-----~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~g~i~~~~~~ 472 (911)
+|++|++++|+ ++| .+|..++. .+++|++|++++|+++ .+|. .++.+++|++|++++|+++|.+| .+.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~ 350 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFG 350 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhC
Confidence 33444444444 444 45555543 1267777777777777 6666 67777777777777777777777 345
Q ss_pred cccccceeeccCcccccccCCCCCCCCC-CCEEEccCccccccccccccCCC--CCcEEECcCCcCcccCCcCcc-----
Q 043567 473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQ-LQYLYLENNKFSGKIEEGLLKSK--KLVELRMSSNMLSGHIPHWMG----- 544 (911)
Q Consensus 473 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~----- 544 (911)
.+++|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+...+ +|++|++++|++++.+|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 6666777777777666 55666666666 777777777776 5666655543 677777777777766666666
Q ss_pred --CcCCCcEEEccCcccccccchhh-ccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCC
Q 043567 545 --NLSYLEVLLMSKNFFEGNIPVQL-LNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLL 621 (911)
Q Consensus 545 --~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~ 621 (911)
.+++|++|++++|+++ .+|..+ ..+++|++|++++|+++...+..+.. .+..+.++++|+
T Consensus 429 ~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------~~~~~~~l~~L~ 491 (636)
T 4eco_A 429 PFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD----------------ENENFKNTYLLT 491 (636)
T ss_dssp CCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE----------------TTEECTTGGGCC
T ss_pred cccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc----------------ccccccccCCcc
Confidence 5556666666666666 344333 33555555555555555222211100 000122334788
Q ss_pred EEeCCCCcccccCchhhh--cCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567 622 TLDLRDNGFSGVIPHQIN--ECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR 699 (911)
Q Consensus 622 ~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~ 699 (911)
+|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++|+.|+|++|+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~---------------------- 547 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR---------------------- 547 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB----------------------
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc----------------------
Confidence 8888888888 6787776 88888888888888887 88888888888888887765
Q ss_pred cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567 700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779 (911)
Q Consensus 700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 779 (911)
++++|++.+.+|
T Consensus 548 --------------------------------------------------------------------~ls~N~l~~~~p 559 (636)
T 4eco_A 548 --------------------------------------------------------------------DAQGNRTLREWP 559 (636)
T ss_dssp --------------------------------------------------------------------CTTCCBCCCCCC
T ss_pred --------------------------------------------------------------------ccccCcccccCh
Confidence 145677777888
Q ss_pred ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824 (911)
Q Consensus 780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 824 (911)
..++.+++|++|+|++|++ +.+|..+. ++|+.|||++|++..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 8888888888888888888 67787766 688888888887664
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-50 Score=495.13 Aligned_cols=536 Identities=21% Similarity=0.228 Sum_probs=394.8
Q ss_pred EEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccC
Q 043567 161 ILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240 (911)
Q Consensus 161 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~ 240 (911)
..|.+++.++. +|. -.+++++|+|++|.+++..+ ..|.++++|++|+|++|...+.++...|+++++|++|+|++
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 45666666663 333 34566777777776664333 45666666666666666555555545566666666666666
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCcCCccCccc--ccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccc
Q 043567 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI--ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNML 318 (911)
Q Consensus 241 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~ 318 (911)
|.+++..|..|.++++|++|+|++|.+++.+|.. ++++++|++|+|++|.+++..+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---------------------- 140 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL---------------------- 140 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC----------------------
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc----------------------
Confidence 6666666666666666666666666666544443 5566666666666665543222
Q ss_pred cccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcC--CcccEEEccCCccccccCCC
Q 043567 319 QVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNN--TKLEVLLLTNNSFTGNLQLP 396 (911)
Q Consensus 319 ~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~~ 396 (911)
+..+.++++|++|++++|.+++..+..+. .+ ++|+.|+++.|.+.+.
T Consensus 141 --------------------------~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~---- 189 (844)
T 3j0a_A 141 --------------------------HPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSR---- 189 (844)
T ss_dssp --------------------------CGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCC----
T ss_pred --------------------------chhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccc----
Confidence 12345556677788888877766555432 33 5555555555555432
Q ss_pred CCCCCCccEEEccCCcCCcCCChhHHH-----hccCCcEEEcccCccccccchhhhcC---CCCcEEeccCcccCCcccH
Q 043567 397 DDKHDFLHHLDISSNNFTGKLPQDMGI-----ILQKLLYMDMSNNHFEGNIASSIAEM---KELRFLDLSKNNFSGELSA 468 (911)
Q Consensus 397 ~~~~~~L~~L~ls~n~l~~~ip~~~~~-----~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~g~i~~ 468 (911)
.|..+.. ....|++|++++|.+++.++..+... .+++.+.++.+.+..
T Consensus 190 --------------------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~---- 245 (844)
T 3j0a_A 190 --------------------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA---- 245 (844)
T ss_dssp --------------------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----
T ss_pred --------------------cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc----
Confidence 2222211 01247888888887777777666543 456667666544321
Q ss_pred HHHhcccccceeeccCcccccccCCCCCCC--CCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCc
Q 043567 469 ALLTSCFSLLWLGLSDNNFYGRIFPGYMNL--TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNL 546 (911)
Q Consensus 469 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 546 (911)
.+..+.+.+.....|..+ ++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+
T Consensus 246 ------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 246 ------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp ------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred ------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 112334444444455544 789999999999999889999999999999999999999999999999
Q ss_pred CCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeC
Q 043567 547 SYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625 (911)
Q Consensus 547 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~L 625 (911)
++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+++ + ..+++|+.|++
T Consensus 314 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l 388 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFL 388 (844)
T ss_dssp SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEE
T ss_pred CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhcc
Confidence 999999999999998889999999999999999999999888877 89999999999999984 2 33789999999
Q ss_pred CCCcccccCchhhhcCCCccEEEccCCcccccC-ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCcccccccc
Q 043567 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI-PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEH 704 (911)
Q Consensus 626 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~ 704 (911)
++|+++ .+|.. ..+++.|++++|++++.- +..+.++++|+.|+|++|++++..+....
T Consensus 389 ~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------- 447 (844)
T 3j0a_A 389 SGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP----------------- 447 (844)
T ss_dssp ESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-----------------
T ss_pred CCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-----------------
Confidence 999998 56654 568999999999998642 33456899999999999999864432110
Q ss_pred chhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc-----ccCC
Q 043567 705 LTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT-----GEIP 779 (911)
Q Consensus 705 l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip 779 (911)
..+++|+.|++++|.++ +..|
T Consensus 448 ------------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 448 ------------------------------------------------------SENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp ------------------------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred ------------------------------------------------------ccCCccccccCCCCccccccccccch
Confidence 11347888999999997 5556
Q ss_pred ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCcc
Q 043567 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATF 859 (911)
Q Consensus 780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 859 (911)
..+..+++|++|+|++|++++.+|..++++++|+.|||++|+|++..|..+. +.|++|||++|+++|.+|.. |..+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L 549 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL 549 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence 7789999999999999999999999999999999999999999988777776 89999999999999999965 5566
Q ss_pred CccccCCCCCCCCCc
Q 043567 860 DESSYRGNLHLCGPT 874 (911)
Q Consensus 860 ~~~~~~gn~~lcg~~ 874 (911)
....+.|||..|.-+
T Consensus 550 ~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 550 SVLDITHNKFICECE 564 (844)
T ss_dssp CEEEEEEECCCCSSS
T ss_pred CEEEecCCCcccccc
Confidence 677788999999543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5e-50 Score=484.97 Aligned_cols=506 Identities=20% Similarity=0.223 Sum_probs=306.2
Q ss_pred CCCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCC-CCCCC--ccc------------cceeecCCCCcEEEEec
Q 043567 34 YKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGG-MSSDC--CNW------------KGVRCNATTGRVIQLLL 98 (911)
Q Consensus 34 ~~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~-~~~~~--C~w------------~gv~C~~~~~~v~~l~L 98 (911)
.+++..+|++||++||+++. +| +|..+++ ...+| |.| .||+|+. .|||+.|+|
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~------~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~L 330 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD------GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSL 330 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT------GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEEC
T ss_pred ccccchHHHHHHHHHHHHcC------CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEEC
Confidence 34567789999999999994 33 7875410 01345 999 9999986 699999999
Q ss_pred CCCCcccccccccccCCcccccccccccCCCCCCEEeC-CCCCCCcccCcccccccCCCCC-----Cc------EEeC-C
Q 043567 99 NDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDL-SNNSFEGVYENQAYDTLGSLKR-----LK------ILNL-G 165 (911)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~l~~-----L~------~L~L-s 165 (911)
++..+ . | .+ +..|+.+++|++||| ++|.+.|..+-.....-..+.. ++ .++. .
T Consensus 331 s~~~L--~-------G----~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~ 396 (876)
T 4ecn_A 331 AGFGA--K-------G----RV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396 (876)
T ss_dssp TTTCC--E-------E----EE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCG
T ss_pred ccCCC--C-------C----cC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCc
Confidence 99886 2 1 12 246888999999999 8888877633110000000000 00 0000 0
Q ss_pred CCCCCccchhhh-----------cCCCCCCEEEcC--CcccCCccChhhhcCCCCCCEEeCCCCCCCC------------
Q 043567 166 YNYFDDSIFLYL-----------NALTSLTTLILR--ENNIQGSRTKQGLSKLKNLEALDLSSNFING------------ 220 (911)
Q Consensus 166 ~n~l~~~~~~~l-----------~~l~~L~~L~Ls--~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~------------ 220 (911)
...+.+..+..+ .....++.+.+. .|++++ +| ..+.++++|++|+|++|+++|
T Consensus 397 ~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp GGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred chhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence 000000000000 111122222222 244544 44 345555555555555555554
Q ss_pred -----ccCccccc--CCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCc-CCc-cCcccccCCC-------CCCee
Q 043567 221 -----SLESQGIC--ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ-LSG-SFPSIISNLT-------SLEYL 284 (911)
Q Consensus 221 -----~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L 284 (911)
.+|.. ++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+++++ +|++|
T Consensus 475 n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 475 DYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred ccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 25553 44 77777777777777777777777777777777777776 666 6666555444 77777
Q ss_pred eccCCcCCCccCh-hhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCC-CCEEECCCC
Q 043567 285 ALFDNNFEGTFPL-SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHN 362 (911)
Q Consensus 285 ~L~~n~l~~~~p~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~-L~~L~Ls~n 362 (911)
++++|.++ .+|. ..++++++|+.|++++|... .++ .+..+++|+.|++++|.+..+|..+..+++ |++|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence 77777776 6663 25667777777777655543 333 566677778888888888888888888887 888888888
Q ss_pred CCCCCCchhhhhcCC--cccEEEccCCccccccCC-C--CC--CCCCccEEEccCCcCCcCCChhHHHhccCCcEEEccc
Q 043567 363 DLDGAFPTWALQNNT--KLEVLLLTNNSFTGNLQL-P--DD--KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN 435 (911)
Q Consensus 363 ~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~-~--~~--~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~ 435 (911)
.++ .+|..+. ..+ +|+.|++++|++.+..+. + .. ..++|+.|++++|.++ .+|..++..+++|++|++++
T Consensus 630 ~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 630 KLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 887 6775432 333 377788888777764321 1 11 3346777777777776 66766665567777777777
Q ss_pred Cccccccchhhhc--------CCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCC--CCCCCCEEE
Q 043567 436 NHFEGNIASSIAE--------MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM--NLTQLQYLY 505 (911)
Q Consensus 436 n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ 505 (911)
|+++ .+|..+.. +++|++|+|++|+++ .+|. .+. .+++|+.|+
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~-------------------------~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD-------------------------DFRATTLPYLSNMD 759 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG-------------------------GGSTTTCTTCCEEE
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH-------------------------HhhhccCCCcCEEE
Confidence 7766 44443322 125555555555554 4444 333 455555555
Q ss_pred ccCccccccccccccCCCCCcEEECcC------CcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEcc
Q 043567 506 LENNKFSGKIEEGLLKSKKLVELRMSS------NMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS 579 (911)
Q Consensus 506 L~~n~l~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls 579 (911)
|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+.++++|+.|++++|++ +.+|..+. ++|+.|+++
T Consensus 760 Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp CCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECC
T ss_pred eCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECC
Confidence 55555554 455555556666665544 667777777777777777777777777 57777654 477777777
Q ss_pred CcccccccCccc-ccccccEEEcccCcc
Q 043567 580 ENYLSGFMTTSF-NISSVEHLYLQKNSL 606 (911)
Q Consensus 580 ~n~l~~~~~~~~-~~~~L~~L~Ls~n~l 606 (911)
+|++....+..+ ....+..+.+.+|+.
T Consensus 836 ~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 836 DNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp SCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCCCCccChHHccccccchheeecCCCc
Confidence 777665554444 333344444555444
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-47 Score=455.30 Aligned_cols=493 Identities=21% Similarity=0.234 Sum_probs=343.7
Q ss_pred CCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeee
Q 043567 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA 285 (911)
Q Consensus 206 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 285 (911)
+++++|++++|.++ .++...|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 34556666666655 33333455566666666666655555455555555666666665555555455555555555555
Q ss_pred ccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCCh-hhhccCCCCEEECCCCCC
Q 043567 286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP-FLLHQFDLKYLDLSHNDL 364 (911)
Q Consensus 286 L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l 364 (911)
+++|.++ .++. .+..+++|++|++++|.+
T Consensus 107 L~~n~l~--------------------------------------------------~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 107 AVETNLA--------------------------------------------------SLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp CTTSCCC--------------------------------------------------CSTTCSCTTCTTCCEEECCSSCC
T ss_pred ccccccc--------------------------------------------------cCCCccccccccccEEecCCCcc
Confidence 5555544 2222 244566788888888888
Q ss_pred CC-CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCC----cEEEcccCccc
Q 043567 365 DG-AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKL----LYMDMSNNHFE 439 (911)
Q Consensus 365 ~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L----~~L~Ls~n~l~ 439 (911)
++ .+|..+ .++++|++|++++|.+++.. |..+. .+++| +.+++++|.++
T Consensus 137 ~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~------------------------~~~~~-~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 137 QSFKLPEYF-SNLTNLEHLDLSSNKIQSIY------------------------CTDLR-VLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCCCCCGGG-GGCTTCCEEECTTSCCCEEC------------------------GGGGH-HHHTCTTCCCEEECTTCCCC
T ss_pred ceecChhhh-cccCCCCEEeCcCCccceec------------------------HHHcc-chhccchhhhhcccCCCCce
Confidence 75 356543 46677776666666665432 22232 24444 45555555555
Q ss_pred cccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCccc------ccccCCCCCCCC--CCCEEEccCc-c
Q 043567 440 GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF------YGRIFPGYMNLT--QLQYLYLENN-K 510 (911)
Q Consensus 440 ~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l------~~~~~~~~~~l~--~L~~L~L~~n-~ 510 (911)
+..|..+..+ +|++|++++|..........+..++.++...+....+ .......+..++ .++.++++++ .
T Consensus 191 ~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 4444444433 4555555555333222222233444444333322111 111111222222 3556677766 6
Q ss_pred ccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcc
Q 043567 511 FSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS 590 (911)
Q Consensus 511 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~ 590 (911)
+.+.+|..+..+++|++|++++|.++ .+|.++..+ +|+.|++++|.+. .+|. ..+++|+.+++++|.+.+..+.
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence 67777777888888888888888887 577777777 8888888888887 5665 4678888888888888776665
Q ss_pred cccccccEEEcccCcccccc--cccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-hhhhcCCC
Q 043567 591 FNISSVEHLYLQKNSLSGPI--PIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP-NQICQLTG 667 (911)
Q Consensus 591 ~~~~~L~~L~Ls~n~l~~~~--p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-~~l~~l~~ 667 (911)
..+++|++|++++|++++.. |..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..| ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 56888999999999988654 7788899999999999999986544 48999999999999999987766 56889999
Q ss_pred CCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeee
Q 043567 668 LGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF 747 (911)
Q Consensus 668 L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 747 (911)
|+.|++++|.+++..|..+..
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------------- 443 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNG----------------------------------------------------------- 443 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTT-----------------------------------------------------------
T ss_pred CCEEeCcCCcccccchhhhhc-----------------------------------------------------------
Confidence 999999999998777765543
Q ss_pred eeccceeeccCCcCccccEEEcccCccc-ccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccC
Q 043567 748 VTKNRYEVYNGSNLDYMVGLDLSCNKLT-GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826 (911)
Q Consensus 748 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i 826 (911)
+++|+.|++++|+++ +.+|..++.+++|++|+|++|++++.+|..++++++|++|++++|++++.+
T Consensus 444 -------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 444 -------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp -------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 347888999999998 689999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCeEeccCCcCeecCCCCCC
Q 043567 827 PPKLTELNFLSNFNVSYNNLSGLIPDKGQ 855 (911)
Q Consensus 827 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 855 (911)
|..+..++.|++|++++|+++|.+|....
T Consensus 511 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred HHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 88999999999999999999999997543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-47 Score=448.88 Aligned_cols=496 Identities=23% Similarity=0.231 Sum_probs=352.8
Q ss_pred CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567 129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL 208 (911)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 208 (911)
+++++||+++|.+++..+ .+|.++++|++|++++|.+++..+..|.++++|++|++++|++++ +++..|.++++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTC
T ss_pred ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccc
Confidence 356666777666666554 456666666666666666666556666666666666666666653 333456666666
Q ss_pred CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCC-CCCcccCCCCCCcEEEccCCcCCccCcccccCCCCC----Ce
Q 043567 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED-HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL----EY 283 (911)
Q Consensus 209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~ 283 (911)
++|++++|.++ .++...++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..|..++.+++| ++
T Consensus 103 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 66666666665 3443346666666666666666655 246666666666666666666665555555555555 55
Q ss_pred eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCC--CCCChhhhccCCCCEEECCC
Q 043567 284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL--NVIPPFLLHQFDLKYLDLSH 361 (911)
Q Consensus 284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~ip~~l~~~~~L~~L~Ls~ 361 (911)
|++++|.+++..| ..+... +|+. |++++|.. ..++..+..+..++.+.+..
T Consensus 182 L~l~~n~l~~~~~-~~~~~~-~L~~-------------------------L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 182 LDLSLNPMNFIQP-GAFKEI-RLHK-------------------------LTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp EECTTCCCCEECT-TTTTTC-EEEE-------------------------EEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred cccCCCCceecCH-HHhccC-ccee-------------------------EecccccccccchhhhhcCccccceeeecc
Confidence 6666666553322 222222 3333 33333322 23344444455554444432
Q ss_pred CCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCC-cCCcCCChhHHHhccCCcEEEcccCcccc
Q 043567 362 NDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN-NFTGKLPQDMGIILQKLLYMDMSNNHFEG 440 (911)
Q Consensus 362 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~ 440 (911)
..+.. ...++ .+....+.+. .--.++.++++++ .+.+.+|..+. .+++|++|++++|.++
T Consensus 235 ~~~~~---------~~~l~--~~~~~~~~~l------~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~- 295 (570)
T 2z63_A 235 GEFRN---------EGNLE--KFDKSALEGL------CNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE- 295 (570)
T ss_dssp EECCC---------CSSCE--ECCTTTTGGG------GGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-
T ss_pred ccccC---------chhhh--hcchhhhccc------cccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-
Confidence 22110 00000 0001111100 0113566777777 66666777665 4889999999999888
Q ss_pred ccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccc--ccc
Q 043567 441 NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI--EEG 518 (911)
Q Consensus 441 ~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~ 518 (911)
.+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..
T Consensus 296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 296 RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccc
Confidence 577778888 9999999999987 7775 3788899999999988776655 67899999999999998654 677
Q ss_pred ccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccc-hhhccCCCCcEEEccCcccccccCccc-ccccc
Q 043567 519 LLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP-VQLLNHRRLQLFSVSENYLSGFMTTSF-NISSV 596 (911)
Q Consensus 519 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L 596 (911)
+..+++|++|++++|++.+..+. +..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+ .+++|
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 88899999999999999865444 8899999999999999987766 568889999999999999999888887 89999
Q ss_pred cEEEcccCccc-ccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCC
Q 043567 597 EHLYLQKNSLS-GPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH 675 (911)
Q Consensus 597 ~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~ 675 (911)
++|++++|+++ +.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..|..+.++++|+.|++++
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 99999999998 67899999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CcCCCCCCc
Q 043567 676 NKFNGSIPS 684 (911)
Q Consensus 676 N~l~g~ip~ 684 (911)
|++++..|.
T Consensus 528 N~~~~~~~~ 536 (570)
T 2z63_A 528 NPWDCSCPR 536 (570)
T ss_dssp SCBCCCTTT
T ss_pred CcccCCCcc
Confidence 999998875
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.6e-47 Score=444.68 Aligned_cols=485 Identities=18% Similarity=0.151 Sum_probs=339.4
Q ss_pred EeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCc
Q 043567 211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290 (911)
Q Consensus 211 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 290 (911)
.|.+++.++ .+|.. +. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|.
T Consensus 10 c~~~~~~l~-~ip~~-~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFT-SIPSG-LT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCS-SCCSC-CC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccc-ccccc-CC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 455555554 44442 21 456666666666665555556666666666666666665555556666666666666665
Q ss_pred CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC-CCc
Q 043567 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG-AFP 369 (911)
Q Consensus 291 l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~-~~p 369 (911)
+++..| ..++ .+++|++|++++|.+++ .+|
T Consensus 86 l~~~~~-~~~~------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 86 LSSLSS-SWFG------------------------------------------------PLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp CCSCCH-HHHT------------------------------------------------TCTTCCEEECTTCCCSSSCSS
T ss_pred cCccCH-HHhc------------------------------------------------cCCCCcEEECCCCcccccchh
Confidence 553222 2222 22334444444444442 122
Q ss_pred hhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcC
Q 043567 370 TWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEM 449 (911)
Q Consensus 370 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 449 (911)
. .+.++++|++|+++ +|.+.+.+|...+..+++|++|++++|.+++.+|..++.+
T Consensus 117 ~-~~~~l~~L~~L~L~------------------------~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 117 S-LFPNLTNLQTLRIG------------------------NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp C-SCTTCTTCCEEEEE------------------------ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred h-hhhccCCccEEECC------------------------CCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 2 12344455555554 4443334443222346777777777777777777777777
Q ss_pred CCCcEEeccCcccCCcccHHHHhcccccceeeccCccccccc--C-CCCCCCCCCCEEEccCccccccccc----cccCC
Q 043567 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRI--F-PGYMNLTQLQYLYLENNKFSGKIEE----GLLKS 522 (911)
Q Consensus 450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l 522 (911)
++|++|+++.|.+. .+|..++..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..+. .+..+
T Consensus 172 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 172 RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp SEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred ccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 77777777777764 666666666777888888887777642 1 2234567888888888888765443 34567
Q ss_pred CCCcEEECcCCcCcccC------CcCccCcCCCcEEEccCcccccc-----cchhhccCCCCcEEEccCcccccccCccc
Q 043567 523 KKLVELRMSSNMLSGHI------PHWMGNLSYLEVLLMSKNFFEGN-----IPVQLLNHRRLQLFSVSENYLSGFMTTSF 591 (911)
Q Consensus 523 ~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~~~~L~~L~ls~n~l~~~~~~~~ 591 (911)
++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... ++......++|+.+++++|.+...+...+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 88899999988877531 12356678889999988876532 23334456789999999999875444443
Q ss_pred -ccccccEEEcccCcccccccc---cccCCCCCCEEeCCCCcccccCc--hhhhcCCCccEEEccCCcccccCChhhhcC
Q 043567 592 -NISSVEHLYLQKNSLSGPIPI---ALFRSSNLLTLDLRDNGFSGVIP--HQINECSNLRFLLLRGNNLEGQIPNQICQL 665 (911)
Q Consensus 592 -~~~~L~~L~Ls~n~l~~~~p~---~l~~~~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l 665 (911)
.+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 689999999999999987754 47788999999999999986532 46889999999999999998 789899999
Q ss_pred CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567 666 TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745 (911)
Q Consensus 666 ~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 745 (911)
++|++|++++|++++ +|..+
T Consensus 410 ~~L~~L~Ls~N~l~~-l~~~~----------------------------------------------------------- 429 (549)
T 2z81_A 410 EKMRFLNLSSTGIRV-VKTCI----------------------------------------------------------- 429 (549)
T ss_dssp TTCCEEECTTSCCSC-CCTTS-----------------------------------------------------------
T ss_pred ccccEEECCCCCccc-ccchh-----------------------------------------------------------
Confidence 999999999999862 33211
Q ss_pred eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825 (911)
Q Consensus 746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ 825 (911)
.+.|+.||+++|++++.+ +.+++|++|+|++|+++ .+|+ .+.+++|++|||++|++++.
T Consensus 430 ---------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 430 ---------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp ---------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred ---------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCc
Confidence 136788999999999753 57899999999999998 7887 57899999999999999999
Q ss_pred CCCCCCCCCCCCeEeccCCcCeecCCCCCCC
Q 043567 826 IPPKLTELNFLSNFNVSYNNLSGLIPDKGQF 856 (911)
Q Consensus 826 ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 856 (911)
+|..+..++.|++|++++|+++|.+|....+
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l 519 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred CHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence 9999999999999999999999998854333
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8e-46 Score=436.80 Aligned_cols=472 Identities=18% Similarity=0.137 Sum_probs=333.1
Q ss_pred CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567 129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL 208 (911)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 208 (911)
++|++|++++|.+++..+ ..++++++|++|++++|.+.+..|..|.++++|++|++++|++++ +++..|+++++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECS----STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccCh----hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCC
Confidence 689999999999998877 678999999999999999999888999999999999999999985 444679999999
Q ss_pred CEEeCCCCCCCCc-cCcccccCCCCCCEEeccCCcCCCCCC-cccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeec
Q 043567 209 EALDLSSNFINGS-LESQGICELKNLFVLNLEKNNIEDHLP-NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286 (911)
Q Consensus 209 ~~L~Ls~n~l~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 286 (911)
++|++++|.+++. ++. .++++++|++|++++|.+.+.+| ..+.++++|++|++++|++++..|..++++++|++|++
T Consensus 101 ~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred cEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 9999999999852 333 58999999999999998544444 68999999999999999999989999999999999999
Q ss_pred cCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCCh-hhhccCCCCEEECCCCCCC
Q 043567 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP-FLLHQFDLKYLDLSHNDLD 365 (911)
Q Consensus 287 ~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~ 365 (911)
+.|.+. .+|...+..+++|++|++++|........ |. ....+.+|+.|++++|.++
T Consensus 180 ~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 180 HLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS----------------------PLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC----------------------CCSSCCCCCCCCEEEEESCEEE
T ss_pred ccCccc-ccchhhHhhcccccEEEccCCcccccccc----------------------ccchhhhhhcccceeccccccc
Confidence 999875 55544455677777777765443221000 11 1122345666666666655
Q ss_pred CCCchhh---hhcCCcccEEEccCCccccccCCC------CCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccC
Q 043567 366 GAFPTWA---LQNNTKLEVLLLTNNSFTGNLQLP------DDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNN 436 (911)
Q Consensus 366 ~~~p~~~---~~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n 436 (911)
+..+..+ ...+++|+.+++++|.+.+....+ ...+.+++.|++.++.+.. ..
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~----~~--------------- 297 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ----FY--------------- 297 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC----GG---------------
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch----hh---------------
Confidence 4333322 124556666666666665432211 1233444444444443221 00
Q ss_pred ccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccC---CCCCCCCCCCEEEccCccccc
Q 043567 437 HFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIF---PGYMNLTQLQYLYLENNKFSG 513 (911)
Q Consensus 437 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~ 513 (911)
....++..+...++|+.|++++|++. .+|..++..+++|++|++++|.+.+.+| ..++.+++|++|++++|++++
T Consensus 298 -~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 298 -LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp -GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred -hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence 00112233344566777777777765 6666665566677777777777666543 346677888888888888875
Q ss_pred ccc--ccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc
Q 043567 514 KIE--EGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF 591 (911)
Q Consensus 514 ~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~ 591 (911)
..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------------------ 429 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------------------ 429 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS------------------------
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh------------------------
Confidence 432 45777888888888888887 57777777788888888888776 333222
Q ss_pred ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM 671 (911)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L 671 (911)
.++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|
T Consensus 430 -~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 430 -PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp -CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred -cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 134555555555555432 35677888888888887 5665 4678888888888888888888888888899999
Q ss_pred EcCCCcCCCCCC
Q 043567 672 DLSHNKFNGSIP 683 (911)
Q Consensus 672 ~Ls~N~l~g~ip 683 (911)
++++|++++..|
T Consensus 503 ~l~~N~~~~~~~ 514 (549)
T 2z81_A 503 WLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCccCCCc
Confidence 999998887776
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-47 Score=456.86 Aligned_cols=327 Identities=21% Similarity=0.307 Sum_probs=239.1
Q ss_pred cchhhh--cCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcc-ccc-ccCCCCCCC------CCCCEEEccCccc
Q 043567 442 IASSIA--EMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-FYG-RIFPGYMNL------TQLQYLYLENNKF 511 (911)
Q Consensus 442 ~p~~l~--~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l 511 (911)
+|..++ ++++|++|++++|++.|.+|..+ ..+++|++|++++|. +++ .+|..++++ ++|++|++++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 444444 44444444444444444444332 344444444444444 444 444433333 6777777777777
Q ss_pred cccccc--cccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCC-CcEEEccCcccccccC
Q 043567 512 SGKIEE--GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRR-LQLFSVSENYLSGFMT 588 (911)
Q Consensus 512 ~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~ls~n~l~~~~~ 588 (911)
+ .+|. .+..+++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 7 6776 77777888888888888877777 7777888888888888877 77777888877 888888888877 455
Q ss_pred ccc-c--cccccEEEcccCccccccccccc-------CCCCCCEEeCCCCcccccCchh-hhcCCCccEEEccCCccccc
Q 043567 589 TSF-N--ISSVEHLYLQKNSLSGPIPIALF-------RSSNLLTLDLRDNGFSGVIPHQ-INECSNLRFLLLRGNNLEGQ 657 (911)
Q Consensus 589 ~~~-~--~~~L~~L~Ls~n~l~~~~p~~l~-------~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~ 657 (911)
..+ . +++|++|++++|++++.+|..+. .+++|++|++++|+++ .+|.. +..+++|++|+|++|+++ .
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-C
Confidence 554 2 34788888888888888888777 7778999999999998 45544 556889999999999988 6
Q ss_pred CChhhhcC--------CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567 658 IPNQICQL--------TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL 729 (911)
Q Consensus 658 ip~~l~~l--------~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l 729 (911)
+|..+... ++|+.|+|++|+++ .+|..+..
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------------- 509 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA----------------------------------------- 509 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-----------------------------------------
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-----------------------------------------
Confidence 66654432 28999999999888 56654430
Q ss_pred CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEEC------CCCcCCcccc
Q 043567 730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNM------SHNFLSESIP 803 (911)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~L------s~N~l~g~ip 803 (911)
..+++|+.|||++|++++ +|..++.+++|++|+| ++|++.+.+|
T Consensus 510 -----------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 510 -----------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp -----------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred -----------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 013467889999999997 8999999999999999 5678889999
Q ss_pred ccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecC
Q 043567 804 ESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLI 850 (911)
Q Consensus 804 ~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 850 (911)
..++++++|+.|||++|++ +.||..+. +.|++||+++|++...-
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 9999999999999999999 78888876 78999999999877543
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.1e-44 Score=428.66 Aligned_cols=521 Identities=22% Similarity=0.213 Sum_probs=295.3
Q ss_pred CcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEec
Q 043567 159 LKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238 (911)
Q Consensus 159 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 238 (911)
+++|||++|.|++..+..|.++++|++|+|++|+|+ .+++.+|.++++|++|+|++|+++ .+|...|.++++|++|+|
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 344444444444333344444444444444444444 222244555555555555555554 344444555555555555
Q ss_pred cCCcCCCCCCcccCCCCCCcEEEccCCcCCc-cCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcc
Q 043567 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNM 317 (911)
Q Consensus 239 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~ 317 (911)
++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+ ..+..+.+++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~--------- 201 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPL--------- 201 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTT---------
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhh---------
Confidence 5555555444455566666666666666543 245555666666666666666653332 33443333321
Q ss_pred ccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCC
Q 043567 318 LQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD 397 (911)
Q Consensus 318 ~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 397 (911)
....++++.|.+..++........++.+++.+|.....++...+..+..++...+..+......
T Consensus 202 ------------~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~---- 265 (635)
T 4g8a_A 202 ------------LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG---- 265 (635)
T ss_dssp ------------CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC----
T ss_pred ------------hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc----
Confidence 1223445555555555555555556666666665544444444545555555544333222110
Q ss_pred CCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCcccc---ccchhhhcCCCCcEEeccCcccCCcccHHHHhcc
Q 043567 398 DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG---NIASSIAEMKELRFLDLSKNNFSGELSAALLTSC 474 (911)
Q Consensus 398 ~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~ 474 (911)
.+.......+ .....+...++..+.... .++..+..+.
T Consensus 266 --------------~l~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~------------------------ 306 (635)
T 4g8a_A 266 --------------NLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT------------------------ 306 (635)
T ss_dssp --------------CCSCCCTTTT-GGGGGSEEEEEEEECCCSCEEECTTTTGGGT------------------------
T ss_pred --------------cccccccccc-ccccchhhhhhhhhhhcccccchhhhhhhhc------------------------
Confidence 0000000000 112233333332221110 1111122222
Q ss_pred cccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEc
Q 043567 475 FSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLM 554 (911)
Q Consensus 475 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 554 (911)
+++.+.+..+.+.... .+.....|+.|++.+|.+.+..+ ..+..|+.+++..|.+... .....+++|+.+++
T Consensus 307 -~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 307 -NVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL 378 (635)
T ss_dssp -TCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred -cccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchh
Confidence 3333333333322211 12233455666666665543322 1234455555555554422 12234455555555
Q ss_pred cCcccc--cccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccc
Q 043567 555 SKNFFE--GNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG 632 (911)
Q Consensus 555 ~~n~l~--~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~ 632 (911)
++|.+. +..+.... .+.+|+.+++..|...+ ++..+..+++|+.+++++|+...
T Consensus 379 s~n~l~~~~~~~~~~~-----------------------~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDF-----------------------GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp CSSCCBEEEECCHHHH-----------------------SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEES
T ss_pred hccccccccccccchh-----------------------hhhhhhhhhcccccccc-ccccccccccccchhhhhccccc
Confidence 555443 12233333 44555555555555542 34456667778888887777665
Q ss_pred cCc-hhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC-CCCcccccccccccCCccccccccchhhhh
Q 043567 633 VIP-HQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG-SIPSCFTNITLWSVGNLDRYRLEHLTFVER 710 (911)
Q Consensus 633 ~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~ 710 (911)
..+ ..+..+++++.++++.|.+.+..|..+..++.|+.|+|++|++.+ .+|..+..
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---------------------- 492 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------------- 492 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh----------------------
Confidence 544 346778888888888888888888888888888888888887543 33433322
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCE
Q 043567 711 LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPV 790 (911)
Q Consensus 711 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~ 790 (911)
+++|+.|||++|++++.+|..|+++++|++
T Consensus 493 --------------------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 493 --------------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp --------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 346788999999999999999999999999
Q ss_pred EECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCC-CCCCeEeccCCcCeecC
Q 043567 791 LNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTEL-NFLSNFNVSYNNLSGLI 850 (911)
Q Consensus 791 L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~i 850 (911)
|+|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|+|++|+++..-
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999999999999999999999999999999999999988 68999999999998754
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=430.29 Aligned_cols=457 Identities=19% Similarity=0.228 Sum_probs=307.3
Q ss_pred CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccC
Q 043567 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFD 288 (911)
Q Consensus 209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 288 (911)
++||+++|.++ .+|.. +. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 35666666666 55543 32 6677777777777766666677777777777777777766666777777777777777
Q ss_pred CcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC-C
Q 043567 289 NNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG-A 367 (911)
Q Consensus 289 n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~-~ 367 (911)
|.++ .+|. . .+++|++|++++|.+++ .
T Consensus 79 N~l~-~lp~-------------------------------------------------~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 79 NKLV-KISC-------------------------------------------------H--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SCCC-EEEC-------------------------------------------------C--CCCCCSEEECCSSCCSSCC
T ss_pred Ccee-ecCc-------------------------------------------------c--ccCCccEEeccCCcccccc
Confidence 7665 3331 1 23456667777777765 3
Q ss_pred CchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCC--cEEEcccCcc--ccccc
Q 043567 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKL--LYMDMSNNHF--EGNIA 443 (911)
Q Consensus 368 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L--~~L~Ls~n~l--~~~~p 443 (911)
+|.. +.++++|++|++++|.+++. .+.. +++| ++|++++|.+ .+..|
T Consensus 107 ~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~-------------------------l~~L~L~~L~l~~n~l~~~~~~~ 157 (520)
T 2z7x_B 107 ICKE-FGNMSQLKFLGLSTTHLEKS---SVLP-------------------------IAHLNISKVLLVLGETYGEKEDP 157 (520)
T ss_dssp CCGG-GGGCTTCCEEEEEESSCCGG---GGGG-------------------------GTTSCEEEEEEEECTTTTSSCCT
T ss_pred chhh-hccCCcceEEEecCcccchh---hccc-------------------------cccceeeEEEeeccccccccccc
Confidence 4543 34677777777777766531 1222 3444 5555555555 44555
Q ss_pred hhhhcCC-CCcEEeccCcccCCcccHHHHhcccccceeeccCcc-------cccccCCCCCCCCCCCEEEccCccccccc
Q 043567 444 SSIAEMK-ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-------FYGRIFPGYMNLTQLQYLYLENNKFSGKI 515 (911)
Q Consensus 444 ~~l~~l~-~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 515 (911)
..+..+. +...+++++|++.+.++...+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+++..
T Consensus 158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHH
T ss_pred ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHH
Confidence 5554443 233445566666655555545556666666666654 444444 5666777777777777666533
Q ss_pred ccccc---CCCCCcEEECcCCcCcccCCcCc-----cCcCCCcEEEccCcccccccc-hhhccCCCCcEEEccCcccccc
Q 043567 516 EEGLL---KSKKLVELRMSSNMLSGHIPHWM-----GNLSYLEVLLMSKNFFEGNIP-VQLLNHRRLQLFSVSENYLSGF 586 (911)
Q Consensus 516 p~~l~---~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~ls~n~l~~~ 586 (911)
+..+. ..++|++|++++|+++|.+|..+ +.+++|+.+++++|.+ .+| ..+..+
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---------------- 298 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---------------- 298 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH----------------
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc----------------
Confidence 22211 13467777777777776666666 5666666666666655 344 222222
Q ss_pred cCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc--cCChhhhc
Q 043567 587 MTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG--QIPNQICQ 664 (911)
Q Consensus 587 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~l~~ 664 (911)
+...+|+.|++++|.+.+.. ....+++|++|++++|++++.+|.+++.+++|++|++++|++++ .+|..++.
T Consensus 299 ----~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 299 ----FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp ----HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred ----cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 01134555556665554221 12467788888888888888888888888888888998888886 56778888
Q ss_pred CCCCCeEEcCCCcCCCCCCcc-cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccce
Q 043567 665 LTGLGMMDLSHNKFNGSIPSC-FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLV 743 (911)
Q Consensus 665 l~~L~~L~Ls~N~l~g~ip~~-~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 743 (911)
+++|++|++++|++++.+|.. +.
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~-------------------------------------------------------- 396 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCS-------------------------------------------------------- 396 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCC--------------------------------------------------------
T ss_pred CCCCCEEECCCCcCCcccccchhc--------------------------------------------------------
Confidence 999999999999988766643 11
Q ss_pred eeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCc
Q 043567 744 EVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823 (911)
Q Consensus 744 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 823 (911)
.++.|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++||+++|+++
T Consensus 397 ----------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 397 ----------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp ----------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred ----------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 134678899999999988888775 78999999999998 88988889999999999999999
Q ss_pred ccCCCC-CCCCCCCCeEeccCCcCeecCC
Q 043567 824 GQIPPK-LTELNFLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 824 g~ip~~-l~~l~~L~~L~ls~N~l~g~iP 851 (911)
.+|.. +..++.|++|++++|++++..|
T Consensus 458 -~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 458 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 56665 8999999999999999998765
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-45 Score=427.06 Aligned_cols=459 Identities=22% Similarity=0.240 Sum_probs=327.7
Q ss_pred CEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEE
Q 043567 132 QSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL 211 (911)
Q Consensus 132 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 211 (911)
++||+++|.++.. | ..+. ++|++|++++|.+.+..|..|.++++|++|+|++|++++..| ..|.++++|++|
T Consensus 3 ~~l~ls~n~l~~i-p----~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHV-P----KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSC-C----CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEE
T ss_pred ceEecCCCCcccc-c----cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEE
Confidence 5788888888854 4 2333 788888888888888888888888888888888888875444 678888888888
Q ss_pred eCCCCCCCCccCcccccCCCCCCEEeccCCcCCC-CCCcccCCCCCCcEEEccCCcCCccCcccccCCCCC--CeeeccC
Q 043567 212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIED-HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL--EYLALFD 288 (911)
Q Consensus 212 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~ 288 (911)
+|++|+++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++
T Consensus 75 ~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 75 DLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp ECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred ecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 88888887 66653 78888888888888877 367788888888888888888775 345666666 8888888
Q ss_pred CcC--CCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC
Q 043567 289 NNF--EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366 (911)
Q Consensus 289 n~l--~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~ 366 (911)
|.+ .+..| ..+..+.. +...+++++|.+.+
T Consensus 148 n~l~~~~~~~-~~l~~l~~-----------------------------------------------~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 148 GETYGEKEDP-EGLQDFNT-----------------------------------------------ESLHIVFPTNKEFH 179 (520)
T ss_dssp CTTTTSSCCT-TTTTTCCE-----------------------------------------------EEEEEECCSSSCCC
T ss_pred cccccccccc-cccccccc-----------------------------------------------ceEEEEeccCcchh
Confidence 777 54444 22222221 12234566666666
Q ss_pred CCchhhhhcCCcccEEEccCCc-------cccccCCCCCCCCCccEEEccCCcCCcCCChhHHH--hccCCcEEEcccCc
Q 043567 367 AFPTWALQNNTKLEVLLLTNNS-------FTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGI--ILQKLLYMDMSNNH 437 (911)
Q Consensus 367 ~~p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~Ls~n~ 437 (911)
.++...+.++++|+.+++++|. +.+..+ .+..+++|++|++++|.+++..+..+.. ..++|++|++++|+
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 6666556667777777777765 333322 3345666777777777665433333221 13577888888888
Q ss_pred cccccchhh-----hcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCcccc
Q 043567 438 FEGNIASSI-----AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512 (911)
Q Consensus 438 l~~~~p~~l-----~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 512 (911)
++|.+|..+ +.+++|+.+++++|.+ .+|...+..+ ....+|+.|++++|.+.
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---------------------HHTCCCSEEEEESSCCC
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcc---------------------cccCceeEEEcCCCccc
Confidence 877777777 7777777777777777 5552222222 00134555555555554
Q ss_pred ccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEccCcccccccCcc
Q 043567 513 GKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENYLSGFMTTS 590 (911)
Q Consensus 513 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~n~l~~~~~~~ 590 (911)
... ....+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|..
T Consensus 316 ~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 316 HML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred ccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 221 11456677777777777777777777777778888888887775 56677788888888888888888755543
Q ss_pred -c-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh-hhcCCC
Q 043567 591 -F-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ-ICQLTG 667 (911)
Q Consensus 591 -~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~-l~~l~~ 667 (911)
+ .+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 469 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence 4 678899999999999888877665 78999999999999 78988889999999999999999 56665 889999
Q ss_pred CCeEEcCCCcCCCCCC
Q 043567 668 LGMMDLSHNKFNGSIP 683 (911)
Q Consensus 668 L~~L~Ls~N~l~g~ip 683 (911)
|+.|++++|++++..+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 9999999999987655
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-44 Score=434.76 Aligned_cols=439 Identities=18% Similarity=0.221 Sum_probs=336.9
Q ss_pred CCceEEECCCCCC-CCCChhhhccCCCCEEEC-CCCCCCCCCchhhhhc---CCcc--cEEEc----------cCCccc-
Q 043567 329 FQLKVLRLPNCSL-NVIPPFLLHQFDLKYLDL-SHNDLDGAFPTWALQN---NTKL--EVLLL----------TNNSFT- 390 (911)
Q Consensus 329 ~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~~---l~~L--~~L~L----------~~n~l~- 390 (911)
..++.|+|+++.+ +.+|+.+++++.|++|+| ++|.++|..|...... ++.. +.+.. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 3577777777777 567777777777777777 6666655433210000 0000 00000 000000
Q ss_pred ----------cccCCCCCCCCCccEEEccC--CcCCcCCChhHHHhccCCcEEEcccCcccc-----------------c
Q 043567 391 ----------GNLQLPDDKHDFLHHLDISS--NNFTGKLPQDMGIILQKLLYMDMSNNHFEG-----------------N 441 (911)
Q Consensus 391 ----------~~~~~~~~~~~~L~~L~ls~--n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~-----------------~ 441 (911)
............++.+.+.. |.+++ +|..++. +++|++|++++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00001111222334444443 77876 8887764 8889999999988888 3
Q ss_pred cchhhh--cCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcc-ccc-ccCCCCCC-------CCCCCEEEccCcc
Q 043567 442 IASSIA--EMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-FYG-RIFPGYMN-------LTQLQYLYLENNK 510 (911)
Q Consensus 442 ~p~~l~--~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~ 510 (911)
+|..++ ++++|++|+|++|++.+.+|.. +..+++|+.|++++|+ +++ .+|..+++ +++|++|++++|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 788876 8899999999999888888865 4688899999999997 887 67765544 4599999999999
Q ss_pred ccccccc--cccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCC-CcEEEccCccccccc
Q 043567 511 FSGKIEE--GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRR-LQLFSVSENYLSGFM 587 (911)
Q Consensus 511 l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~ls~n~l~~~~ 587 (911)
++ .+|. .+..+++|++|++++|+++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 99 8888 8999999999999999999 888 8999999999999999999 89999999999 999999999998 56
Q ss_pred Cccc-cc--ccccEEEcccCccccccccc---cc--CCCCCCEEeCCCCcccccCchhh-hcCCCccEEEccCCcccccC
Q 043567 588 TTSF-NI--SSVEHLYLQKNSLSGPIPIA---LF--RSSNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRGNNLEGQI 658 (911)
Q Consensus 588 ~~~~-~~--~~L~~L~Ls~n~l~~~~p~~---l~--~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~i 658 (911)
|..+ .. ++|+.|++++|++++.+|.. +. .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 6665 33 45999999999999876632 22 3458999999999999 567665 58999999999999999 77
Q ss_pred ChhhhcCC--------CCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCC
Q 043567 659 PNQICQLT--------GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLS 730 (911)
Q Consensus 659 p~~l~~l~--------~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~ 730 (911)
|..+.... +|+.|+|++|+++ .+|..+..
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------ 749 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------ 749 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence 77665433 8999999999998 67765430
Q ss_pred CCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCC------CcCCccccc
Q 043567 731 SEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSH------NFLSESIPE 804 (911)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~------N~l~g~ip~ 804 (911)
..+++|+.|||++|++++ +|..++.+++|+.|+|++ |++++.+|.
T Consensus 750 ----------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 750 ----------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp ----------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ----------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 123578889999999997 899999999999999977 889999999
Q ss_pred cccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567 805 SFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852 (911)
Q Consensus 805 ~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 852 (911)
.++++++|+.|+|++|++ +.||..+. +.|+.|||++|++...-+.
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 999999999999999999 89999876 6999999999999876543
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8e-42 Score=410.23 Aligned_cols=512 Identities=21% Similarity=0.194 Sum_probs=359.7
Q ss_pred CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567 129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL 208 (911)
Q Consensus 129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 208 (911)
+++++|||++|.|++..+ .+|.++++|++|||++|.|++..+.+|.++++|++|+|++|+++ .+|...|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence 479999999999999877 78999999999999999999888889999999999999999998 5666789999999
Q ss_pred CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCCcEEEccCCcCCccCcccccCCCCCC----e
Q 043567 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLE----Y 283 (911)
Q Consensus 209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~ 283 (911)
++|+|++|+++ .++...|+++++|++|++++|.+++. .|..++.+++|++|++++|++++..+..+..+.+++ .
T Consensus 127 ~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 99999999998 56666799999999999999999874 678899999999999999999988888887665544 6
Q ss_pred eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC-------CCChhhhccCCCCE
Q 043567 284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-------VIPPFLLHQFDLKY 356 (911)
Q Consensus 284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~ip~~l~~~~~L~~ 356 (911)
++++.|.+.. ++...+ ....++.+++..+..........+..+..++...+..+... .....+.....+..
T Consensus 206 ~~ls~n~l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 206 LDLSLNPMNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp EECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhcccCcccc-cCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 7888898874 443333 33455667776554443333334444444444443222110 01111222222333
Q ss_pred EECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccC
Q 043567 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNN 436 (911)
Q Consensus 357 L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n 436 (911)
.++..+...... ............++.+++.++.+.+ ++... ....++.|++.+|
T Consensus 284 ~~l~~~~~~~~~----------------------~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~--~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 284 EEFRLAYLDYYL----------------------DGIIDLFNCLTNVSSFSLVSVTIER-VKDFS--YNFGWQHLELVNC 338 (635)
T ss_dssp EEEEEECCCSCE----------------------EECTTTTGGGTTCSEEEEESCEEEE-CGGGG--SCCCCSEEEEESC
T ss_pred hhhhhhhhcccc----------------------cchhhhhhhhccccccccccccccc-ccccc--cchhhhhhhcccc
Confidence 332222111000 0001112234445555555554432 22211 1445556666665
Q ss_pred ccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccc--cCCCCCCCCCCCEEEccCcccccc
Q 043567 437 HFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR--IFPGYMNLTQLQYLYLENNKFSGK 514 (911)
Q Consensus 437 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~ 514 (911)
.+.+..+. .++.|+.+++..|......+ ...+++|+.++++.|.+... .+..+..+.+|+.+++..+.+..
T Consensus 339 ~~~~~~~~---~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~- 411 (635)
T 4g8a_A 339 KFGQFPTL---KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT- 411 (635)
T ss_dssp EESSCCCC---BCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred cccCcCcc---cchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence 55433322 34455555555555442221 12455666666666655432 23334456677777777777663
Q ss_pred ccccccCCCCCcEEECcCCcCcccCC-cCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc-cccCccc-
Q 043567 515 IEEGLLKSKKLVELRMSSNMLSGHIP-HWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS-GFMTTSF- 591 (911)
Q Consensus 515 ~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~-~~~~~~~- 591 (911)
.+..+..+++|+.++++.++.....+ ..+..+++++.++++.|.+.+..+..+..++.+++|++++|.+. +.+|..+
T Consensus 412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 44556677788888887777665443 45677788888888888888777877888888888888888744 4556666
Q ss_pred ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcC-CCCCe
Q 043567 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL-TGLGM 670 (911)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l-~~L~~ 670 (911)
.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+ ++|++
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 78889999999999998888899999999999999999998888899999999999999999999999999888 68999
Q ss_pred EEcCCCcCCC
Q 043567 671 MDLSHNKFNG 680 (911)
Q Consensus 671 L~Ls~N~l~g 680 (911)
|+|++|+++.
T Consensus 572 L~L~~Np~~C 581 (635)
T 4g8a_A 572 LNLTQNDFAC 581 (635)
T ss_dssp EECTTCCBCC
T ss_pred EEeeCCCCcc
Confidence 9999999874
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-42 Score=405.36 Aligned_cols=462 Identities=18% Similarity=0.197 Sum_probs=295.3
Q ss_pred CCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeee
Q 043567 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA 285 (911)
Q Consensus 206 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 285 (911)
...+++|+++|.++ .+|.. +. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCC-SCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCc-cCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 34466777777766 45543 22 6677777777777766666677777777777777777766666677777777777
Q ss_pred ccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567 286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD 365 (911)
Q Consensus 286 L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~ 365 (911)
+++|.++ .+| .. .+++|++|++++|.++
T Consensus 107 Ls~N~l~-~lp-------------------------------------------------~~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 107 VSHNRLQ-NIS-------------------------------------------------CC--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp CTTSCCC-EEC-------------------------------------------------SC--CCTTCSEEECCSSCCS
T ss_pred CCCCcCC-ccC-------------------------------------------------cc--ccccCCEEECCCCCcc
Confidence 7777665 344 11 3345667777777776
Q ss_pred C-CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCc--cEEEccCCcC--CcCCChhHHHhccCCcEEEcccCcccc
Q 043567 366 G-AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL--HHLDISSNNF--TGKLPQDMGIILQKLLYMDMSNNHFEG 440 (911)
Q Consensus 366 ~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~ls~n~l--~~~ip~~~~~~l~~L~~L~Ls~n~l~~ 440 (911)
+ .+|. .+.++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|
T Consensus 135 ~l~~p~-~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~---------------------- 188 (562)
T 3a79_B 135 VLPVCK-EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET---------------------- 188 (562)
T ss_dssp BCCCCG-GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC----------------------
T ss_pred ccCchH-hhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc----------------------
Confidence 4 2333 345778888888888777642 22233333 5555555555 44444
Q ss_pred ccchhhhcCC-CCcEEeccCcccCCcccHHHHhcccccceeeccCcc-----cccccCCCCCCCCCCCEEEccCcccccc
Q 043567 441 NIASSIAEMK-ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-----FYGRIFPGYMNLTQLQYLYLENNKFSGK 514 (911)
Q Consensus 441 ~~p~~l~~l~-~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 514 (911)
..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|. +.+. ...+..+++|+.+++.++.+++.
T Consensus 189 ---~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 189 ---ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp ---CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHH
T ss_pred ---ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHH
Confidence 3333322 011234444444444443333344444444444442 1111 12234455666666665554432
Q ss_pred c----cccccCCCCCcEEECcCCcCcccCCcCc-----cCcCCCcEEEccCcccccccch-hhccCCCCcEEEccCcccc
Q 043567 515 I----EEGLLKSKKLVELRMSSNMLSGHIPHWM-----GNLSYLEVLLMSKNFFEGNIPV-QLLNHRRLQLFSVSENYLS 584 (911)
Q Consensus 515 ~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~ls~n~l~ 584 (911)
. +..+ ..++|++|++++|+++|.+|..+ ..++.|+.+++..+.+ .+|. .+...
T Consensus 265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~-------------- 327 (562)
T 3a79_B 265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV-------------- 327 (562)
T ss_dssp HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH--------------
T ss_pred HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh--------------
Confidence 1 1111 22366666666666666666655 4444444444444444 2331 11110
Q ss_pred cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc--cCChhh
Q 043567 585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG--QIPNQI 662 (911)
Q Consensus 585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~l 662 (911)
+...+|++|++++|.+.... ....+++|++|++++|++++.+|..++++++|++|++++|++++ .+|..+
T Consensus 328 ------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 328 ------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp ------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred ------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 01245666666666664221 12567889999999999998888889999999999999999986 345678
Q ss_pred hcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccc
Q 043567 663 CQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL 742 (911)
Q Consensus 663 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 742 (911)
..+++|+.|++++|++++.+|....
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~------------------------------------------------------- 424 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTC------------------------------------------------------- 424 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCC-------------------------------------------------------
T ss_pred cCCCCCCEEECCCCcCCCccChhhh-------------------------------------------------------
Confidence 8899999999999999876665311
Q ss_pred eeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcC
Q 043567 743 VEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822 (911)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 822 (911)
..++.|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|||++|++
T Consensus 425 ----------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 425 ----------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp ----------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred ----------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence 1134778899999999998888765 78999999999998 7888888999999999999999
Q ss_pred cccCCCC-CCCCCCCCeEeccCCcCeecCCCC
Q 043567 823 SGQIPPK-LTELNFLSNFNVSYNNLSGLIPDK 853 (911)
Q Consensus 823 ~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~~ 853 (911)
+ .+|.. +..++.|++|++++|++++..|..
T Consensus 486 ~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 486 K-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp C-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred C-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9 56766 999999999999999999987743
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-41 Score=399.74 Aligned_cols=459 Identities=21% Similarity=0.225 Sum_probs=293.9
Q ss_pred CCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCE
Q 043567 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEA 210 (911)
Q Consensus 131 L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 210 (911)
.+++|+++|.+++.+. .+. ++|++|++++|.+.+..+..|.++++|++|+|++|++++..| ..|.++++|++
T Consensus 33 ~~~l~ls~~~L~~ip~-----~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPK-----DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCT-----TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCC-----CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCE
Confidence 3677777777776322 222 677788888888777777777777888888888887774434 56777777888
Q ss_pred EeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCCcEEEccCCcCCccCcccccCCCCC--Ceeecc
Q 043567 211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL--EYLALF 287 (911)
Q Consensus 211 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~ 287 (911)
|++++|+++ .+|.. .+++|++|++++|.+++. +|..|+++++|++|++++|++++. .+..+++| ++|+++
T Consensus 105 L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 888877776 66653 677777777777777763 356777777777777777777653 33444444 777777
Q ss_pred CCcC--CCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567 288 DNNF--EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD 365 (911)
Q Consensus 288 ~n~l--~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~ 365 (911)
+|.+ ++..| ..+..+.. +.+ .+++++|.+.
T Consensus 178 ~n~l~~~~~~~-~~l~~l~~-~~l----------------------------------------------~l~l~~n~~~ 209 (562)
T 3a79_B 178 LVSYHIKGGET-ESLQIPNT-TVL----------------------------------------------HLVFHPNSLF 209 (562)
T ss_dssp ESSCCCCSSSC-CEEEECCE-EEE----------------------------------------------EEEECSSSCC
T ss_pred cccccccccCc-ccccccCc-ceE----------------------------------------------EEEecCccch
Confidence 7776 54444 22222210 111 2233344444
Q ss_pred CCCchhhhhcCCcccEEEccCCcc-----ccccCCCCCCCCCccEEEccCCcCCcC----CChhHHHhccCCcEEEcccC
Q 043567 366 GAFPTWALQNNTKLEVLLLTNNSF-----TGNLQLPDDKHDFLHHLDISSNNFTGK----LPQDMGIILQKLLYMDMSNN 436 (911)
Q Consensus 366 ~~~p~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~~L~~L~ls~n~l~~~----ip~~~~~~l~~L~~L~Ls~n 436 (911)
+.++...+..+++|+.+++++|.. .+.. ..+..++.|+.+++.++.+.+. ++... ..++|++|++++|
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n 286 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNL 286 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEE
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEecc
Confidence 334433333444444444444421 0000 0011333444444444443321 11111 1346777777777
Q ss_pred ccccccchhh-----hcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccc
Q 043567 437 HFEGNIASSI-----AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKF 511 (911)
Q Consensus 437 ~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 511 (911)
.++|.+|..+ ..++.|+.++++.+.+ .+|...+..+ ....+|++|++++|.+
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV---------------------FAEMNIKMLSISDTPF 343 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH---------------------HHTCCCSEEEEESSCC
T ss_pred Eeeccccchhhhcccccchheehhhccccee--ecChhhhhhh---------------------hccCcceEEEccCCCc
Confidence 7777777665 5555566666666655 4453322111 0013455666666655
Q ss_pred cccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEccCcccccccCc
Q 043567 512 SGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENYLSGFMTT 589 (911)
Q Consensus 512 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~n~l~~~~~~ 589 (911)
.... ....+++|++|++++|++++.+|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|.+++.+|.
T Consensus 344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 4221 11456677777777777777677777777777777777777775 3456677778888888888888774444
Q ss_pred c-c-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh-hhcCC
Q 043567 590 S-F-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ-ICQLT 666 (911)
Q Consensus 590 ~-~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~-l~~l~ 666 (911)
. + .+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..++
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 497 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence 3 4 678888888888888887776664 68999999999998 78888889999999999999999 56666 88999
Q ss_pred CCCeEEcCCCcCCCCCCc
Q 043567 667 GLGMMDLSHNKFNGSIPS 684 (911)
Q Consensus 667 ~L~~L~Ls~N~l~g~ip~ 684 (911)
+|+.|++++|++.+..|-
T Consensus 498 ~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TCCCEECCSCCBCCCHHH
T ss_pred CCCEEEecCCCcCCCcch
Confidence 999999999999877663
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-40 Score=382.67 Aligned_cols=378 Identities=19% Similarity=0.229 Sum_probs=325.9
Q ss_pred cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS 483 (911)
Q Consensus 404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~ 483 (911)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35666666666 6776 2 47899999999999988888999999999999999999888887777889999999999
Q ss_pred CcccccccCCCCCCCCCCCEEEccCcccccccccc--ccCCCCCcEEECcCCcCcccCCcC-ccCcCCCcEEEccCcccc
Q 043567 484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEG--LLKSKKLVELRMSSNMLSGHIPHW-MGNLSYLEVLLMSKNFFE 560 (911)
Q Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 560 (911)
+|.+++..|..+.++++|++|++++|++++.++.. +..+++|++|++++|++++..|.. +..+++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888999999999999999999998866655 888999999999999999887776 889999999999999999
Q ss_pred cccchhhccC--CCCcEEEccCcccccccCcc---------cccccccEEEcccCcccccccccccCC---CCCCEEeCC
Q 043567 561 GNIPVQLLNH--RRLQLFSVSENYLSGFMTTS---------FNISSVEHLYLQKNSLSGPIPIALFRS---SNLLTLDLR 626 (911)
Q Consensus 561 ~~~p~~l~~~--~~L~~L~ls~n~l~~~~~~~---------~~~~~L~~L~Ls~n~l~~~~p~~l~~~---~~L~~L~Ls 626 (911)
+..|..+..+ .+|+.+++++|.+.+..+.. +.+++|++|++++|++++.+|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8888888776 78999999999998876543 245789999999999999888877654 889999999
Q ss_pred CCcccccC----------chhhhc--CCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccccccc
Q 043567 627 DNGFSGVI----------PHQINE--CSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694 (911)
Q Consensus 627 ~N~l~~~~----------p~~l~~--l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~ 694 (911)
+|.+.+.. +..+.. .++|++|++++|.+++.+|..+..+++|+.|+|++|++++..|..+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----- 322 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL----- 322 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC-----
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc-----
Confidence 98665431 222222 3689999999999999999999999999999999999997777655433
Q ss_pred CCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcc
Q 043567 695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKL 774 (911)
Q Consensus 695 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 774 (911)
+.|+.|++++|++
T Consensus 323 -------------------------------------------------------------------~~L~~L~Ls~N~l 335 (455)
T 3v47_A 323 -------------------------------------------------------------------THLLKLNLSQNFL 335 (455)
T ss_dssp -------------------------------------------------------------------TTCCEEECCSSCC
T ss_pred -------------------------------------------------------------------ccCCEEECCCCcc
Confidence 4688899999999
Q ss_pred cccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCC
Q 043567 775 TGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKG 854 (911)
Q Consensus 775 ~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 854 (911)
++..|..++.+++|++|+|++|++++.+|..++++++|++|||++|++++..+..+..++.|++|++++|+++|.+|...
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 98889999999999999999999999999999999999999999999998777788999999999999999999999754
Q ss_pred CCCc
Q 043567 855 QFAT 858 (911)
Q Consensus 855 ~~~~ 858 (911)
.+..
T Consensus 416 ~l~~ 419 (455)
T 3v47_A 416 YLSR 419 (455)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.5e-40 Score=375.97 Aligned_cols=420 Identities=22% Similarity=0.302 Sum_probs=221.4
Q ss_pred CCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEE
Q 043567 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL 334 (911)
Q Consensus 255 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 334 (911)
+.|++|++++|.+ +.+|..++++++|++|++++|.+.|.+| ..++++++|+.+++..|.. .++++|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~l~~L 76 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQAHEL 76 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HTCSEE
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cCCCEE
Confidence 4444445544444 3444445555555555555555444444 2344444444433332210 245566
Q ss_pred ECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCC
Q 043567 335 RLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414 (911)
Q Consensus 335 ~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 414 (911)
++++|.+..+|.. .++|++|++++|.+++ +|. ..++|++|++++|.+++
T Consensus 77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~----------------------- 125 (454)
T 1jl5_A 77 ELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA----------------------- 125 (454)
T ss_dssp ECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-----------------------
T ss_pred EecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-----------------------
Confidence 6666666666552 2456677777776664 443 12445555555554443
Q ss_pred cCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCC
Q 043567 415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG 494 (911)
Q Consensus 415 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 494 (911)
+|.. .++|++|++++|++++ +| .++++++|++|++++|++++ +|. ...+|++|++++|.+++ +| .
T Consensus 126 --l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~-l~-~ 190 (454)
T 1jl5_A 126 --LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE-LP-E 190 (454)
T ss_dssp --CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CC-C
T ss_pred --ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc-Cc-c
Confidence 2221 1456666666666654 44 36666666666666666653 443 22466777777776665 33 5
Q ss_pred CCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCc
Q 043567 495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ 574 (911)
Q Consensus 495 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 574 (911)
++++++|++|++++|++++ +|.. .++|++|++++|+++ .+|. ++.+++|++|++++|++++ +|.. .++|+
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~ 260 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLE 260 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCC
T ss_pred ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccC
Confidence 7777788888888887774 4432 257888888888877 5663 7778888888888888874 5542 36788
Q ss_pred EEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcC-CCccEEEccCCc
Q 043567 575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINEC-SNLRFLLLRGNN 653 (911)
Q Consensus 575 ~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~ 653 (911)
.|++++|++++. |.. .++|++|++++|++++ +|.. .++|++|++++|++++ ++ .+ ++|++|++++|+
T Consensus 261 ~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 261 ALNVRDNYLTDL-PEL--PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNK 328 (454)
T ss_dssp EEECCSSCCSCC-CCC--CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSC
T ss_pred EEECCCCccccc-Ccc--cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCc
Confidence 888888888773 332 3778888888888876 2211 2578899999998885 22 23 589999999999
Q ss_pred ccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCC
Q 043567 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE 733 (911)
Q Consensus 654 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~ 733 (911)
+++ +|.. +++|+.|++++|+++ .+|..
T Consensus 329 l~~-lp~~---~~~L~~L~L~~N~l~-~lp~~------------------------------------------------ 355 (454)
T 1jl5_A 329 LIE-LPAL---PPRLERLIASFNHLA-EVPEL------------------------------------------------ 355 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCS-CCCCC------------------------------------------------
T ss_pred ccc-cccc---CCcCCEEECCCCccc-cccch------------------------------------------------
Confidence 986 6654 588999999999887 35530
Q ss_pred CCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccc--cCCccccCCCCCCEEECCCCcCCccccccccccCC
Q 043567 734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG--EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM 811 (911)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g--~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 811 (911)
+++|+.||+++|++++ .+|..++. |+.|++.|.+|.. +++
T Consensus 356 ---------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~ 397 (454)
T 1jl5_A 356 ---------------------------PQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQN 397 (454)
T ss_dssp ---------------------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------
T ss_pred ---------------------------hhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCc
Confidence 1357789999999998 78876654 3457888888874 478
Q ss_pred CCEEeccCCcCcc--cCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567 812 IESLDLSHNRLSG--QIPPKLTELNFLSNFNVSYNNLSGLIPDK 853 (911)
Q Consensus 812 L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 853 (911)
|+.||+++|+++| .+|.+ ++.|.+++|.+.+.+|..
T Consensus 398 L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 398 LKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp --------------------------------------------
T ss_pred CCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 8999999999998 78865 445668899999888754
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.3e-39 Score=367.58 Aligned_cols=384 Identities=22% Similarity=0.252 Sum_probs=264.3
Q ss_pred eEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCC
Q 043567 332 KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN 411 (911)
Q Consensus 332 ~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n 411 (911)
+.++.+++.+..+|. + .++|++|++++|.+++..|. .+.++++|++|+++ +|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~------------------------~n 64 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVE------------------------QQ 64 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECC------------------------CC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChh-HhccCccccEEECc------------------------CC
Confidence 345666666666665 2 24566666666666543333 23344445544444 44
Q ss_pred cCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHH-HHhcccccceeeccCcccccc
Q 043567 412 NFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAA-LLTSCFSLLWLGLSDNNFYGR 490 (911)
Q Consensus 412 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~-~~~~~~~L~~L~L~~n~l~~~ 490 (911)
.+.+.++...+..+++|++|++++|.+++..|..++++++|++|++++|++++.++.. .+..+++|++|++++|.+.+.
T Consensus 65 ~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 65 TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 4444443333334566666666666666666666666666666666666665433322 234555666666666666555
Q ss_pred cCCC-CCCCCCCCEEEccCccccccccccccCC--CCCcEEECcCCcCcccCCcCc--------cCcCCCcEEEccCccc
Q 043567 491 IFPG-YMNLTQLQYLYLENNKFSGKIEEGLLKS--KKLVELRMSSNMLSGHIPHWM--------GNLSYLEVLLMSKNFF 559 (911)
Q Consensus 491 ~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l--------~~l~~L~~L~L~~n~l 559 (911)
.|.. +.++++|++|++++|++++..+..+..+ .+|+.|++++|.+.+..+.++ ..+++|++|++++|.+
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 5544 5566666666666666666666555544 567777777777765444332 3556777888888877
Q ss_pred ccccchhhccC---CCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccC--CCCCCEEeCCCCcccccC
Q 043567 560 EGNIPVQLLNH---RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFR--SSNLLTLDLRDNGFSGVI 634 (911)
Q Consensus 560 ~~~~p~~l~~~---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~--~~~L~~L~Ls~N~l~~~~ 634 (911)
++..|..+... ++|+.+++++|...+.... .+.+.+..+..+.. .++|++|++++|++++..
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred cccchhhhhccccccceeeEeeccccccccccc-------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence 77777666554 6777777777765543221 11222222222222 368999999999999999
Q ss_pred chhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccc
Q 043567 635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVN 714 (911)
Q Consensus 635 p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~ 714 (911)
|..++.+++|++|++++|++++..|..+..+++|+.|+|++|++++..|..+..
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 345 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-------------------------- 345 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------
Confidence 999999999999999999999888999999999999999999997665655443
Q ss_pred ccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECC
Q 043567 715 SIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMS 794 (911)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls 794 (911)
++.|+.||+++|++++.+|..++.+++|++|+|+
T Consensus 346 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 346 ----------------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp ----------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ----------------------------------------------cccCCEEECCCCcccccChhhccccccccEEECC
Confidence 3478889999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCCEEeccCCcCcccCCC
Q 043567 795 HNFLSESIPESFSNLKMIESLDLSHNRLSGQIPP 828 (911)
Q Consensus 795 ~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~ 828 (911)
+|++++..+..++.+++|+.|++++|++++.+|.
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999987778889999999999999999998873
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.9e-39 Score=367.30 Aligned_cols=390 Identities=21% Similarity=0.263 Sum_probs=182.5
Q ss_pred CCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEc
Q 043567 329 FQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDI 408 (911)
Q Consensus 329 ~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 408 (911)
..|++|++++|.++.+|+.++++++|++|++++|.+.|.+|..+. ++++|+.+++..|.. ..+++|++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhc-----------cCCCEEEe
Confidence 467778888888888888888888888888888888877777543 555553333333321 23455555
Q ss_pred cCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccc
Q 043567 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFY 488 (911)
Q Consensus 409 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~ 488 (911)
++|.++ .+|.. .++|++|++++|.+++ +|.. +++|++|++++|++++ ++. ..++|++|++++|.++
T Consensus 79 ~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 79 NNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLE 144 (454)
T ss_dssp TTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCS
T ss_pred cCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCC
Confidence 555555 23331 3455555555555554 3322 2455555565555552 221 1145566666666555
Q ss_pred cccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhc
Q 043567 489 GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568 (911)
Q Consensus 489 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 568 (911)
+ +| .++++++|++|++++|++++ +|.. ..+|++|++++|++++ +| .++.+++|++|++++|++++ +|...
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 4 33 35566666666666666553 3332 2356666666666654 34 35566666666666666553 33221
Q ss_pred cCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEE
Q 043567 569 NHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLL 648 (911)
Q Consensus 569 ~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 648 (911)
++|++|++++|.+. .+|....+++|++|++++|++++ +|.. .++|++|++++|++++ +|.. .++|++|+
T Consensus 215 --~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp --TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred --CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 35666666666655 33332255666666666666653 3332 2456666666666664 4432 25566666
Q ss_pred ccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCC
Q 043567 649 LRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQ 728 (911)
Q Consensus 649 L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 728 (911)
+++|++++ +|.. .++|+.|++++|++++ +|. +
T Consensus 284 ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~----~--------------------------------------- 315 (454)
T 1jl5_A 284 VSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD----L--------------------------------------- 315 (454)
T ss_dssp CCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC----C---------------------------------------
T ss_pred CcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC----C---------------------------------------
Confidence 66666654 1111 1456666666666542 110 0
Q ss_pred CCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccc
Q 043567 729 LSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSN 808 (911)
Q Consensus 729 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~ 808 (911)
.++|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .
T Consensus 316 --------------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~ 355 (454)
T 1jl5_A 316 --------------------------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L 355 (454)
T ss_dssp --------------------------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C
T ss_pred --------------------------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h
Confidence 0134445555555553 4433 345555555555555 3444 2
Q ss_pred cCCCCEEeccCCcCcc--cCCCCCCCC-------------CCCCeEeccCCcCee--cCCCC
Q 043567 809 LKMIESLDLSHNRLSG--QIPPKLTEL-------------NFLSNFNVSYNNLSG--LIPDK 853 (911)
Q Consensus 809 l~~L~~LdLs~N~l~g--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~iP~~ 853 (911)
+++|++||+++|++++ .+|.++.++ ++|++|++++|+++| .||..
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 4555555555555555 555555554 789999999999998 88864
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-38 Score=344.74 Aligned_cols=294 Identities=24% Similarity=0.355 Sum_probs=234.7
Q ss_pred CChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCcc--ccceeecCCC--CcEEEEecCCCCccccccccc
Q 043567 36 ACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCN--WKGVRCNATT--GRVIQLLLNDTSKFIEYSKNY 111 (911)
Q Consensus 36 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~--w~gv~C~~~~--~~v~~l~L~~~~~~~~~~~~~ 111 (911)
.|.++|++||++||+++. +|. .+++|..+ ++||. |.||+|+..+ ++|+.++|++..+ .
T Consensus 2 ~c~~~~~~aL~~~k~~~~------~~~-~l~~W~~~----~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--~----- 63 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG------NPT-TLSSWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--P----- 63 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT------CCG-GGTTCCTT----SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--S-----
T ss_pred CCCHHHHHHHHHHHHhcC------Ccc-cccCCCCC----CCCCcCCCcceEeCCCCCCceEEEEECCCCCc--c-----
Confidence 699999999999999994 444 78999764 78998 9999998655 8999999988776 1
Q ss_pred ccCCcccccccccccCCCCCCEEeCCC-CCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCC
Q 043567 112 TYGDMVLSLNVSLFHPFEELQSLDLSN-NSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190 (911)
Q Consensus 112 ~~~~~~~~~~~s~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 190 (911)
+. . .-+..|..+++|++|++++ |.+.+.+| ..++++++|++|++++|.+.+.+|..+.++++|++|++++
T Consensus 64 --~~--~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 64 --KP--Y-PIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp --SC--E-ECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred --CC--c-ccChhHhCCCCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 10 0 1123677888999999984 88888777 6788888999999999988888888888889999999999
Q ss_pred cccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCC-CCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCc
Q 043567 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK-NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG 269 (911)
Q Consensus 191 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 269 (911)
|.+.+.+| ..+.++++|++|++++|++++.+|.. +..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++
T Consensus 135 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 135 NALSGTLP-PSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp SEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CccCCcCC-hHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 88887776 56888888888888888888777764 77787 888888888888888888888886 8888888888888
Q ss_pred cCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC-CCChhh
Q 043567 270 SFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-VIPPFL 348 (911)
Q Consensus 270 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~ip~~l 348 (911)
..|..+..+++|++|++++|.+++.+|. +.. +++|++|++++|.+. .+|..+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~-------------------------l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK--VGL-------------------------SKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG--CCC-------------------------CTTCCEEECCSSCCEECCCGGG
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc--ccc-------------------------cCCCCEEECcCCcccCcCChHH
Confidence 8888888888888888888888765552 222 345566666777774 677778
Q ss_pred hccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCc
Q 043567 349 LHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNS 388 (911)
Q Consensus 349 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 388 (911)
..+++|++|++++|+++|.+|.. ..+++|+.+++++|+
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred hcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 88888888888888888777774 467777777777776
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-36 Score=347.41 Aligned_cols=355 Identities=19% Similarity=0.160 Sum_probs=251.7
Q ss_pred hcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCc
Q 043567 374 QNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELR 453 (911)
Q Consensus 374 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 453 (911)
.++++|++|++++|.+++.. .+..+++|++|++++|.+++ +| +. .+++|++|++++|.+++. + ++.+++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 46777888888888777642 35567777777777777774 44 32 367777777777777764 2 66777777
Q ss_pred EEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC
Q 043567 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533 (911)
Q Consensus 454 ~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 533 (911)
+|++++|++++ ++ +..+++|++|++++|.+++. .++.+++|++|++++|+..+.+ .+..+++|++|++++|
T Consensus 110 ~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 77777777764 44 45667777777777777663 2566677777777777544444 3566677777777777
Q ss_pred cCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccccccc
Q 043567 534 MLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIA 613 (911)
Q Consensus 534 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 613 (911)
++++ +| ++.+++|+.|++++|++++. .+..+++|++|++++|++++ +| ...+++|++|++++|++++..
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC---
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC---
Confidence 7765 33 66667777777777777653 25666777777777777766 33 225666777777777766532
Q ss_pred ccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccc
Q 043567 614 LFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWS 693 (911)
Q Consensus 614 l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~ 693 (911)
+..+++|+.|++++| +|+.|++++|.+.|.+| ++.+++|+.|++++|++.|.+|.....++.+
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L- 312 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL- 312 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-
Confidence 344556666666554 46778888998888887 4678999999999999888887543332210
Q ss_pred cCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCc
Q 043567 694 VGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNK 773 (911)
Q Consensus 694 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 773 (911)
.....+.|+.|++++|+
T Consensus 313 ---------------------------------------------------------------~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 313 ---------------------------------------------------------------DLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp ---------------------------------------------------------------CCTTCTTCCEEECTTCC
T ss_pred ---------------------------------------------------------------chhhcccCCEEECCCCc
Confidence 01223578999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567 774 LTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK 853 (911)
Q Consensus 774 l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 853 (911)
++| +| ++.+++|+.|++++|+++| ++.|+.|++++|+++|. .++..|..+++++|+++|.||..
T Consensus 330 l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 330 LTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 998 44 9999999999999999996 24677889999999997 35667888999999999999975
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=339.19 Aligned_cols=356 Identities=21% Similarity=0.225 Sum_probs=204.2
Q ss_pred cccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhc
Q 043567 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLS 203 (911)
Q Consensus 124 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 203 (911)
.+..+++|++|++++|.+++. + .++.+++|++|++++|.+++. + ++.+++|++|++++|++++. + ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-----~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-----GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-----TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-----hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cC
Confidence 355667788888888877764 2 467777788888888777764 2 67777777777777777642 3 66
Q ss_pred CCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCe
Q 043567 204 KLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEY 283 (911)
Q Consensus 204 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 283 (911)
++++|++|++++|++++ ++ ++++++|++|++++|.+++. + ++.+++|++|++++|+..+.+ .++.+++|++
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 77777777777777764 43 67777777777777777763 2 667777777777777554444 3666777777
Q ss_pred eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCC
Q 043567 284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHND 363 (911)
Q Consensus 284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~ 363 (911)
|++++|.+++ +| +..+++|+.|+ +++|.+..++ +..+++|++|++++|+
T Consensus 175 L~ls~n~l~~-l~---l~~l~~L~~L~-------------------------l~~N~l~~~~--l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 175 LDCSFNKITE-LD---VSQNKLLNRLN-------------------------CDTNNITKLD--LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp EECCSSCCCC-CC---CTTCTTCCEEE-------------------------CCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred EECCCCccce-ec---cccCCCCCEEE-------------------------CcCCcCCeec--cccCCCCCEEECcCCc
Confidence 7777777664 33 33444444444 4444444332 3444555555555555
Q ss_pred CCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccc
Q 043567 364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443 (911)
Q Consensus 364 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p 443 (911)
+++ +| +..+++|++|++++|++++. +...+++|+.|+++.| +|+.|++++|.+.+.+|
T Consensus 224 l~~-ip---~~~l~~L~~L~l~~N~l~~~---~~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 224 LTE-ID---VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE
T ss_pred ccc-cC---ccccCCCCEEEeeCCcCCCc---CHHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc
Confidence 553 33 23455555555555555542 2334455555554433 23344555555555554
Q ss_pred hhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCC
Q 043567 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK 523 (911)
Q Consensus 444 ~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 523 (911)
++.+++|+.|++++|...+.+|. ...+|+.+++++| ++|++|++++|++++. + +..++
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~ 339 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT 339 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT
T ss_pred --ccccccCCEEECCCCcccceecc----CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCC
Confidence 34555566666666655555542 2334444443332 4555555555555542 2 55555
Q ss_pred CCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCc
Q 043567 524 KLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTT 589 (911)
Q Consensus 524 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~ 589 (911)
+|++|++++|++++ ++.|..|++++|.+.|. .++..|..+++++|+++|.+|.
T Consensus 340 ~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 340 KLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp TCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 55555555555553 12344444555555543 1233344445555555554444
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=347.41 Aligned_cols=343 Identities=19% Similarity=0.161 Sum_probs=219.2
Q ss_pred EEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC
Q 043567 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533 (911)
Q Consensus 454 ~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 533 (911)
.++.+++.++ .+|..+ .++++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3444444443 344322 234555555555555555556666666666666666666666666666666666666666
Q ss_pred cCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccc
Q 043567 534 MLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI 612 (911)
Q Consensus 534 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~ 612 (911)
++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 6665444556666666666666666666666666666666666666666666666555 666777777777777655555
Q ss_pred cccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCC-cccccccc
Q 043567 613 ALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP-SCFTNITL 691 (911)
Q Consensus 613 ~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~ 691 (911)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++ +| ..+..
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~--- 246 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRH--- 246 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTT---
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcC---
Confidence 66677777777777777776666667777777777777777766666666666677777777777663 23 22221
Q ss_pred cccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEccc
Q 043567 692 WSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771 (911)
Q Consensus 692 ~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 771 (911)
+++|+.|||++
T Consensus 247 ---------------------------------------------------------------------l~~L~~L~Ls~ 257 (477)
T 2id5_A 247 ---------------------------------------------------------------------LVYLRFLNLSY 257 (477)
T ss_dssp ---------------------------------------------------------------------CTTCCEEECCS
T ss_pred ---------------------------------------------------------------------ccccCeeECCC
Confidence 23566677777
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCC
Q 043567 772 NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 772 N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 851 (911)
|++++..+..+..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..++.|++|++++|++.+..+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 77776666677777777777777777777777777777777777777777776666666777777777777777776543
Q ss_pred CCCCCCccCccccCCCCCCCCC
Q 043567 852 DKGQFATFDESSYRGNLHLCGP 873 (911)
Q Consensus 852 ~~~~~~~~~~~~~~gn~~lcg~ 873 (911)
....+.......+.++...|..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 338 LLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp GHHHHTTTTSSCCTTCCCBEEE
T ss_pred hHhHHhhhhccccCccCceeCC
Confidence 2211111122334555555643
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9e-35 Score=334.34 Aligned_cols=324 Identities=25% Similarity=0.303 Sum_probs=223.8
Q ss_pred ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 504 (911)
+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 5555555555555554333 5555555555555555553222 3455555555555555554322 5566666666
Q ss_pred EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS 584 (911)
Q Consensus 505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~ 584 (911)
++++|++++. + .+..+++|++|+++ |.+.+.. .++++++|+.|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 140 ~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 140 ELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccc
Confidence 6666666542 2 35666666666664 3444322 266667777777777776532 23666777777777777777
Q ss_pred cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567 585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664 (911)
Q Consensus 585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~ 664 (911)
+..+ ...+++|++|++++|++++. ..+..+++|+.|++++|.+++..| +..+++|++|++++|++++..| +..
T Consensus 213 ~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 213 DITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 6655 22567777888888877643 357778888888888888886544 7888888888888888886444 778
Q ss_pred CCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccccee
Q 043567 665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE 744 (911)
Q Consensus 665 l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 744 (911)
+++|+.|++++|++++..| +.
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~--------------------------------------------------------- 306 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--IS--------------------------------------------------------- 306 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GG---------------------------------------------------------
T ss_pred CCccCeEEcCCCcccCchh--hc---------------------------------------------------------
Confidence 8888889998888875332 11
Q ss_pred eeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567 745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824 (911)
Q Consensus 745 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 824 (911)
.+++|+.|++++|++++..| ++.+++|+.|++++|++++. ..++++++|+.|++++|++++
T Consensus 307 ---------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 307 ---------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp ---------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred ---------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 13467889999999987766 78889999999999999875 468889999999999999998
Q ss_pred cCCCCCCCCCCCCeEeccCCcCeec
Q 043567 825 QIPPKLTELNFLSNFNVSYNNLSGL 849 (911)
Q Consensus 825 ~ip~~l~~l~~L~~L~ls~N~l~g~ 849 (911)
.+| +..++.|++|++++|++++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 887 88899999999999999883
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-34 Score=331.98 Aligned_cols=328 Identities=27% Similarity=0.336 Sum_probs=235.9
Q ss_pred CCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccc
Q 043567 399 KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLL 478 (911)
Q Consensus 399 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~ 478 (911)
.+++|++|++++|.++ .+|. +. .+++|++|++++|.+++..+ +..+++|++|++++|++++ ++. +..+++|+
T Consensus 66 ~l~~L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~ 137 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP--LKNLTNLN 137 (466)
T ss_dssp GCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCS
T ss_pred hhcCCCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH--HcCCCCCC
Confidence 3444555555555544 2333 22 35666666666666654443 5666666666666666653 332 45666666
Q ss_pred eeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcc
Q 043567 479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNF 558 (911)
Q Consensus 479 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 558 (911)
+|++++|.+.+. +.+..+++|++|+++ |.+.+.. .+..+++|++|++++|++++. ..+..+++|++|++++|.
T Consensus 138 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 138 RLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCc
Confidence 666666666542 236667777777775 4444332 267777788888888877643 346777888888888888
Q ss_pred cccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhh
Q 043567 559 FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI 638 (911)
Q Consensus 559 l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l 638 (911)
+++..| +..+++|+.|++++|.+.+. +....+++|++|++++|.+++..| +..+++|+.|++++|++++..| +
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~ 283 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 283 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred cccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c
Confidence 776555 66778888888888887764 333378888888898888886655 7888999999999999986543 8
Q ss_pred hcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccccc
Q 043567 639 NECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGI 718 (911)
Q Consensus 639 ~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~ 718 (911)
..+++|++|++++|++++..| +..+++|+.|++++|++++..| +..
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------------------------------ 329 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS------------------------------ 329 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG------------------------------
T ss_pred cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc------------------------------
Confidence 889999999999999986544 7889999999999999886544 221
Q ss_pred ccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcC
Q 043567 719 YYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFL 798 (911)
Q Consensus 719 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l 798 (911)
++.|+.|++++|++++. ..+..+++|+.|++++|++
T Consensus 330 ------------------------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 330 ------------------------------------------LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 34678899999999865 4689999999999999999
Q ss_pred CccccccccccCCCCEEeccCCcCcccCCCC
Q 043567 799 SESIPESFSNLKMIESLDLSHNRLSGQIPPK 829 (911)
Q Consensus 799 ~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~ 829 (911)
++.+| ++.+++|+.|++++|++++ +|..
T Consensus 366 ~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 366 SDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp CBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred Cccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 98888 8999999999999999997 3443
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.3e-36 Score=324.03 Aligned_cols=258 Identities=32% Similarity=0.532 Sum_probs=213.4
Q ss_pred CCcEEEccCccccc--ccchhhccCCCCcEEEccC-cccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEE
Q 043567 548 YLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSE-NYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTL 623 (911)
Q Consensus 548 ~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~-n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 623 (911)
+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..+ ++++|++|++++|++++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4455555555555555552 55555555444 55666666677777777778888888999999
Q ss_pred eCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCC-CCCeEEcCCCcCCCCCCcccccccccccCCcccccc
Q 043567 624 DLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLT-GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRL 702 (911)
Q Consensus 624 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~ 702 (911)
++++|++++.+|..+..+++|++|++++|++++.+|..++.++ +|+.|++++|+++|.+|..+..+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------------- 197 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------- 197 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-------------
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-------------
Confidence 9999999988999999999999999999999999999999988 89999999999998888766542
Q ss_pred ccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccc
Q 043567 703 EHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI 782 (911)
Q Consensus 703 ~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i 782 (911)
.|+.|++++|++++.+|..+
T Consensus 198 ------------------------------------------------------------~L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 198 ------------------------------------------------------------NLAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp ------------------------------------------------------------CCSEEECCSSEEEECCGGGC
T ss_pred ------------------------------------------------------------cccEEECcCCcccCcCCHHH
Confidence 26779999999999999999
Q ss_pred cCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCccCcc
Q 043567 783 GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDES 862 (911)
Q Consensus 783 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~ 862 (911)
+.+++|++|+|++|++++.+|. ++.+++|++|||++|+++|.+|..+..++.|++|++++|+++|.+|..+++..+...
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l 296 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChH
Confidence 9999999999999999988887 899999999999999999999999999999999999999999999999888999999
Q ss_pred ccCCCCCCCCCccCCCCC
Q 043567 863 SYRGNLHLCGPTINKSCN 880 (911)
Q Consensus 863 ~~~gn~~lcg~~l~~~c~ 880 (911)
.+.||+++||.|+. .|.
T Consensus 297 ~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 297 AYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp GTCSSSEEESTTSS-CCC
T ss_pred HhcCCCCccCCCCC-CCC
Confidence 99999999998876 573
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-34 Score=337.19 Aligned_cols=334 Identities=23% Similarity=0.213 Sum_probs=225.8
Q ss_pred CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEE
Q 043567 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR 529 (911)
Q Consensus 450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 529 (911)
.+++.+++++|.++ .+|..++..+++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..|+.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 33444444444443 34444444444444444444444444444555566666666666666655555556666666666
Q ss_pred CcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccc
Q 043567 530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP 609 (911)
Q Consensus 530 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~ 609 (911)
+++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|+.|++++|.+++.... .+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSE-
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccc-
Confidence 666666644444456666666666666666655555566666666666666666554221 35666677777776653
Q ss_pred ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccc
Q 043567 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI 689 (911)
Q Consensus 610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l 689 (911)
+...++|+.|++++|.+... |..+ .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 23345677888888877643 3222 2578888888888876 4667888888888888888887766655432
Q ss_pred cccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEc
Q 043567 690 TLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDL 769 (911)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 769 (911)
++|+.|+|
T Consensus 278 ------------------------------------------------------------------------~~L~~L~L 285 (597)
T 3oja_B 278 ------------------------------------------------------------------------QRLERLYI 285 (597)
T ss_dssp ------------------------------------------------------------------------SSCCEEEC
T ss_pred ------------------------------------------------------------------------cCCCEEEC
Confidence 36777888
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567 770 SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849 (911)
Q Consensus 770 s~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 849 (911)
++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|||++|++++. | +..++.|++|++++|++++.
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 8888885 6777788999999999999998 6888899999999999999999865 3 67788999999999999987
Q ss_pred CCCCCCCCccCccccCCCCCCCCCc
Q 043567 850 IPDKGQFATFDESSYRGNLHLCGPT 874 (911)
Q Consensus 850 iP~~~~~~~~~~~~~~gn~~lcg~~ 874 (911)
.+ ...+..+....+.+++..|+.+
T Consensus 361 ~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 361 SL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred hH-HHHHHHHhhhccccccccCCcc
Confidence 43 2356677777889999999864
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=317.38 Aligned_cols=335 Identities=21% Similarity=0.196 Sum_probs=210.2
Q ss_pred ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 504 (911)
+++++.+++++|.++...+..+..+++|++|++++|.++ +..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-------------------------~~~~~~~~~l~~L~~L 98 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------------------EIDTYAFAYAHTIQKL 98 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-------------------------EECTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-------------------------ccChhhccCCCCcCEE
Confidence 455666666666555444444555555555555555554 3333444455555555
Q ss_pred EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS 584 (911)
Q Consensus 505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~ 584 (911)
++++|++++..|..+..+++|++|++++|+++...+..++.+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 99 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 55555555444444555555555555555555332233455555555555555555444444555555555555555555
Q ss_pred cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567 585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664 (911)
Q Consensus 585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~ 664 (911)
+... ..+++|+.|++++|.+++ +...++|+.|++++|.+... |.. ..++|++|++++|.+++. ..+..
T Consensus 179 ~~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 179 HVDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp BCCG--GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred cccc--ccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcC
Confidence 4321 134556666666666552 22334677777777777643 332 245777777777777653 46777
Q ss_pred CCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccccee
Q 043567 665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE 744 (911)
Q Consensus 665 l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 744 (911)
+++|+.|++++|.+++..|..+..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------------------- 270 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVK-------------------------------------------------------- 270 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred CCCccEEECCCCcCCCcChhHccc--------------------------------------------------------
Confidence 777777788777777655554433
Q ss_pred eeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567 745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824 (911)
Q Consensus 745 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 824 (911)
++.|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|++++
T Consensus 271 ----------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 271 ----------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp ----------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred ----------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 2356778888888874 5666778899999999999998 577778999999999999999985
Q ss_pred cCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCccCccccCCCCCCCCCc
Q 043567 825 QIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPT 874 (911)
Q Consensus 825 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 874 (911)
. | +..++.|++|++++|++++.-. ...+..+....+.+++..|+.+
T Consensus 333 ~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 333 L-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp C-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred e-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 4 3 6788899999999999988532 2345556666778888888643
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=328.33 Aligned_cols=271 Identities=18% Similarity=0.174 Sum_probs=154.3
Q ss_pred cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS 483 (911)
Q Consensus 404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~ 483 (911)
+.++.+++.++ .+|..+ .+++++|++++|++++..+..|.++++|++|+|++|.+++..|. .+..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECC
Confidence 34555555555 566544 35677777777777766666777777777777777776633232 33455666666666
Q ss_pred CcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccccc
Q 043567 484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563 (911)
Q Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 563 (911)
+|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 66655544445566666666666666666666666666666666666666666666666666666666666666666544
Q ss_pred chhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCC
Q 043567 564 PVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642 (911)
Q Consensus 564 p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 642 (911)
+..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 4556666666666666665555544444 455555555555554444444444444455555555554432223444444
Q ss_pred CccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 643 ~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
+|++|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 4444444444444444444444444444444444443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-32 Score=304.42 Aligned_cols=313 Identities=21% Similarity=0.213 Sum_probs=249.2
Q ss_pred CCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCC
Q 043567 127 PFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLK 206 (911)
Q Consensus 127 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 206 (911)
.++++++|++++|.++...+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+ ..+.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCC
Confidence 46899999999999887655 567889999999999999998888899999999999999999985444 6789999
Q ss_pred CCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeec
Q 043567 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286 (911)
Q Consensus 207 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 286 (911)
+|++|++++|+++ .+|...|.++++|++|++++|.+++..|..+.++++|++|++++|++++. .++.+++|++|++
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 9999999999998 77777789999999999999999998888899999999999999999865 3667899999999
Q ss_pred cCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC
Q 043567 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366 (911)
Q Consensus 287 ~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~ 366 (911)
++|.+++ +...++|+.|++++|..... +. ...++|+.|++++|.+..+ +.+..+++|++|++++|.+++
T Consensus 194 ~~n~l~~------~~~~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 194 SYNLLST------LAIPIAVEELDASHNSINVV-RG---PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CSSCCSE------EECCSSCSEEECCSSCCCEE-EC---CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE
T ss_pred ccccccc------cCCCCcceEEECCCCeeeec-cc---cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCC
Confidence 9998863 33456788888887654322 22 2236788888888888765 467778888888888888875
Q ss_pred CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhh
Q 043567 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI 446 (911)
Q Consensus 367 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 446 (911)
..|.. +..+++|++|++++|++++.. .....+++|++|++++|.++ .+|..+.. +++|++|++++|.+++. + +
T Consensus 263 ~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~~-~--~ 335 (390)
T 3o6n_A 263 IMYHP-FVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL-K--L 335 (390)
T ss_dssp EESGG-GTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-C--C
T ss_pred cChhH-ccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcce-ecCccccc-cCcCCEEECCCCcccee-C--c
Confidence 55543 457888888888888887642 23356778888888888877 67766654 78888888888887754 2 5
Q ss_pred hcCCCCcEEeccCcccCCcc
Q 043567 447 AEMKELRFLDLSKNNFSGEL 466 (911)
Q Consensus 447 ~~l~~L~~L~Ls~n~l~g~i 466 (911)
..+++|++|++++|++.+.-
T Consensus 336 ~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 336 STHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CTTCCCSEEECCSSCEEHHH
T ss_pred hhhccCCEEEcCCCCccchh
Confidence 66777888888888776543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-31 Score=296.04 Aligned_cols=304 Identities=20% Similarity=0.302 Sum_probs=184.3
Q ss_pred ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 504 (911)
+++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++. +..+++|++|++++|.+++. +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 6667777777776653 23 3666666777777666665 3333 34555555555555544432 234444444444
Q ss_pred EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS 584 (911)
Q Consensus 505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~ 584 (911)
++++|++++. +. +..+++|+.|++++|.....++. +..+++|++|++++|.+.
T Consensus 116 ------------------------~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 116 ------------------------YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp ------------------------ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred ------------------------ECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC
Confidence 4444444422 11 44445555555555533322222 445555555555555554
Q ss_pred cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567 585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664 (911)
Q Consensus 585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~ 664 (911)
+..+ ...+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 169 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp CCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred Cchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 4333 2245566666666666653322 6666777777777777775433 6677777777777777764333 677
Q ss_pred CCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccccee
Q 043567 665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE 744 (911)
Q Consensus 665 l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 744 (911)
+++|+.|++++|.+++. + .+
T Consensus 242 l~~L~~L~l~~n~l~~~-~-~~---------------------------------------------------------- 261 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-N-AV---------------------------------------------------------- 261 (347)
T ss_dssp CTTCCEEECCSSCCCCC-G-GG----------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCC-h-hH----------------------------------------------------------
Confidence 77777777777776531 1 11
Q ss_pred eeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567 745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824 (911)
Q Consensus 745 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 824 (911)
..+++|+.|++++|++++. +.+..+++|+.|++++|++++..|..++.+++|+.|++++|++++
T Consensus 262 --------------~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 262 --------------KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp --------------TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred --------------hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 1134667788888877753 347778888888888888888888888888888888888888887
Q ss_pred cCCCCCCCCCCCCeEeccCCcCe
Q 043567 825 QIPPKLTELNFLSNFNVSYNNLS 847 (911)
Q Consensus 825 ~ip~~l~~l~~L~~L~ls~N~l~ 847 (911)
..| +..++.|++|++++|+++
T Consensus 326 ~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 326 IRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGG--GGGCTTCSEESSSCC---
T ss_pred ccC--hhhhhccceeehhhhccc
Confidence 666 777888888888888765
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.4e-34 Score=333.02 Aligned_cols=377 Identities=19% Similarity=0.179 Sum_probs=253.5
Q ss_pred CCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCcccc----ccchhhhcCCCCcEEeccCcccCCcccHHHHhccc-
Q 043567 401 DFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG----NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF- 475 (911)
Q Consensus 401 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~- 475 (911)
++|++|++++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567778887777644444445568899999999999875 35667788899999999999987655656655566
Q ss_pred ---ccceeeccCccccc----ccCCCCCCCCCCCEEEccCcccccccccccc-----CCCCCcEEECcCCcCccc----C
Q 043567 476 ---SLLWLGLSDNNFYG----RIFPGYMNLTQLQYLYLENNKFSGKIEEGLL-----KSKKLVELRMSSNMLSGH----I 539 (911)
Q Consensus 476 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~ 539 (911)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|++++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 4567778888888888888888755444332 245788888888888763 3
Q ss_pred CcCccCcCCCcEEEccCcccccccchhhcc-----CCCCcEEEccCcccccc----cCccc-ccccccEEEcccCccccc
Q 043567 540 PHWMGNLSYLEVLLMSKNFFEGNIPVQLLN-----HRRLQLFSVSENYLSGF----MTTSF-NISSVEHLYLQKNSLSGP 609 (911)
Q Consensus 540 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~ls~n~l~~~----~~~~~-~~~~L~~L~Ls~n~l~~~ 609 (911)
+..+..+++|++|++++|.++...+..+.. .++|+.|++++|.+++. ++..+ .+++|++|++++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 455666788888888888877554444432 55788888888877764 23333 567777888887777654
Q ss_pred c-----cccccCCCCCCEEeCCCCccccc----CchhhhcCCCccEEEccCCcccccCChhhhcC-----CCCCeEEcCC
Q 043567 610 I-----PIALFRSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQIPNQICQL-----TGLGMMDLSH 675 (911)
Q Consensus 610 ~-----p~~l~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l-----~~L~~L~Ls~ 675 (911)
. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+.+..+..+... ++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 22222467788888888877753 56667777778888888877765544444432 5777778877
Q ss_pred CcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceee
Q 043567 676 NKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEV 755 (911)
Q Consensus 676 N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (911)
|.+++.....+...
T Consensus 323 n~l~~~~~~~l~~~------------------------------------------------------------------ 336 (461)
T 1z7x_W 323 CSFTAACCSHFSSV------------------------------------------------------------------ 336 (461)
T ss_dssp SCCBGGGHHHHHHH------------------------------------------------------------------
T ss_pred CCCchHHHHHHHHH------------------------------------------------------------------
Confidence 77664311111100
Q ss_pred ccCCcCccccEEEcccCcccccCCccccC-----CCCCCEEECCCCcCCc----cccccccccCCCCEEeccCCcCccc-
Q 043567 756 YNGSNLDYMVGLDLSCNKLTGEIPSEIGE-----LQEIPVLNMSHNFLSE----SIPESFSNLKMIESLDLSHNRLSGQ- 825 (911)
Q Consensus 756 ~~~~~l~~L~~LdLs~N~l~g~ip~~i~~-----l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~l~g~- 825 (911)
...++.|+.||+++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|++||+++|++++.
T Consensus 337 --l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 337 --LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp --HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred --HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 001246677888888777665555543 5678888888888776 6777777778888888888877754
Q ss_pred -------CCCCCCCCCCCCeEeccCCcCee
Q 043567 826 -------IPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 826 -------ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
+|.. ...|+.|++.++....
T Consensus 415 ~~~l~~~l~~~---~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 415 ILQLVESVRQP---GCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHTST---TCCCCEEECTTCCCCH
T ss_pred HHHHHHHhccC---CcchhheeecccccCH
Confidence 3332 2345555555555443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-31 Score=318.24 Aligned_cols=311 Identities=20% Similarity=0.175 Sum_probs=217.0
Q ss_pred cCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEE
Q 043567 426 QKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY 505 (911)
Q Consensus 426 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 505 (911)
.+++.+++++|.+....+..+..+++|++|++++|.+++ ++...+..+++|+.|+|++|.+++..+..|+.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 344444444444443333334444444444444444442 2222233444444455555554444455556666777777
Q ss_pred ccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccc
Q 043567 506 LENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG 585 (911)
Q Consensus 506 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~ 585 (911)
|++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. + +..+++|+.+++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence 777777654444456677777777777777766666677777777777777777643 2 4456777777777777665
Q ss_pred ccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcC
Q 043567 586 FMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL 665 (911)
Q Consensus 586 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l 665 (911)
.. ..++|+.|++++|.+... |..+ .++|+.|+|++|.+++ +.++..+++|++|+|++|.+++.+|..++.+
T Consensus 207 l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 LA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp EE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 32 235688888888888743 3322 2689999999999986 4788999999999999999999999999999
Q ss_pred CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567 666 TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745 (911)
Q Consensus 666 ~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 745 (911)
++|+.|+|++|.+++ +|..+
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~----------------------------------------------------------- 297 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYG----------------------------------------------------------- 297 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSS-----------------------------------------------------------
T ss_pred cCCCEEECCCCCCCC-CCccc-----------------------------------------------------------
Confidence 999999999999875 23221
Q ss_pred eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825 (911)
Q Consensus 746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ 825 (911)
..++.|+.|||++|.++ .+|..++.+++|+.|+|++|++++. | ++.+++|+.|++++|.+++.
T Consensus 298 -------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 298 -------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred -------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 12457889999999999 7888899999999999999999865 3 67888999999999999875
Q ss_pred C
Q 043567 826 I 826 (911)
Q Consensus 826 i 826 (911)
.
T Consensus 361 ~ 361 (597)
T 3oja_B 361 S 361 (597)
T ss_dssp H
T ss_pred h
Confidence 4
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-31 Score=291.32 Aligned_cols=307 Identities=21% Similarity=0.313 Sum_probs=229.7
Q ss_pred CCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccc
Q 043567 397 DDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFS 476 (911)
Q Consensus 397 ~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~ 476 (911)
...+++|++|+++++.+. .+|. +. .+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred chhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence 347889999999999997 5665 43 49999999999999986544 899999999999999998 4553 678999
Q ss_pred cceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccC
Q 043567 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK 556 (911)
Q Consensus 477 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 556 (911)
|++|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 9999999999986543 7778888888888886554433 36677777777777777764332 55666666666666
Q ss_pred cccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCch
Q 043567 557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPH 636 (911)
Q Consensus 557 n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~ 636 (911)
|.+.+. +. +..+ ++|+.+++++|.+++..+ +..+++|++|++++|++++. |.
T Consensus 187 n~l~~~-~~-~~~l-----------------------~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~ 238 (347)
T 4fmz_A 187 NQIEDI-SP-LASL-----------------------TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP 238 (347)
T ss_dssp SCCCCC-GG-GGGC-----------------------TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred Cccccc-cc-ccCC-----------------------CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc
Confidence 665532 22 4444 455555555555554333 56677788888888877754 33
Q ss_pred hhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccc
Q 043567 637 QINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI 716 (911)
Q Consensus 637 ~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~ 716 (911)
+..+++|++|++++|.+++ + ..+..+++|+.|++++|++++. | .+.
T Consensus 239 -~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~~~----------------------------- 284 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-S-VLN----------------------------- 284 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-G-GGG-----------------------------
T ss_pred -hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-h-hhc-----------------------------
Confidence 7778888888888888875 3 4577888888888888887642 1 111
Q ss_pred ccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCC
Q 043567 717 GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN 796 (911)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N 796 (911)
.++.|+.|++++|++++..|..++.+++|++|++++|
T Consensus 285 -------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 285 -------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp -------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred -------------------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 1346788999999999888899999999999999999
Q ss_pred cCCccccccccccCCCCEEeccCCcCc
Q 043567 797 FLSESIPESFSNLKMIESLDLSHNRLS 823 (911)
Q Consensus 797 ~l~g~ip~~l~~l~~L~~LdLs~N~l~ 823 (911)
++++..| ++.+++|+.||+++|+++
T Consensus 322 ~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 322 HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccccC--hhhhhccceeehhhhccc
Confidence 9998777 889999999999999886
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.8e-30 Score=284.61 Aligned_cols=288 Identities=20% Similarity=0.235 Sum_probs=165.5
Q ss_pred CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM 530 (911)
Q Consensus 451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 530 (911)
+++.++++++.++ .+|..+ .++|+.|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666665 455432 234555555555555444444555555555555555555444445555555555555
Q ss_pred cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccc--c
Q 043567 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS--G 608 (911)
Q Consensus 531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~--~ 608 (911)
++|+++ .+|..+. ++|++|++++|.+++..+..+.. +++|++|++++|.++ +
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG-----------------------LRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS-----------------------CSSCCEEECCSCCCBGGG
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCC-----------------------CccCCEEECCCCccccCC
Confidence 555554 3333332 44444444444444333333444 444555555555543 2
Q ss_pred cccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccc
Q 043567 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTN 688 (911)
Q Consensus 609 ~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 688 (911)
..|..+..+ +|+.|++++|++++ +|..+. ++|++|++++|++++..|..+..+++|+.|+|++|++++..|..+..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 344445554 66666666666663 444443 56677777777776666666667777777777777766544443332
Q ss_pred ccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEE
Q 043567 689 ITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLD 768 (911)
Q Consensus 689 l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 768 (911)
+++|+.|+
T Consensus 240 ------------------------------------------------------------------------l~~L~~L~ 247 (332)
T 2ft3_A 240 ------------------------------------------------------------------------LPTLRELH 247 (332)
T ss_dssp ------------------------------------------------------------------------CTTCCEEE
T ss_pred ------------------------------------------------------------------------CCCCCEEE
Confidence 23556677
Q ss_pred cccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc------CCCCEEeccCCcCc--ccCCCCCCCCCCCCeEe
Q 043567 769 LSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL------KMIESLDLSHNRLS--GQIPPKLTELNFLSNFN 840 (911)
Q Consensus 769 Ls~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~~LdLs~N~l~--g~ip~~l~~l~~L~~L~ 840 (911)
+++|+++ .+|..++.+++|++|++++|++++..+..+... ..|+.|++++|.+. +..|..+..++.|+.++
T Consensus 248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 7777777 677777777777777777777776666666543 56777788887776 55666777777777777
Q ss_pred ccCCc
Q 043567 841 VSYNN 845 (911)
Q Consensus 841 ls~N~ 845 (911)
+++|+
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 77764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.3e-30 Score=280.91 Aligned_cols=249 Identities=24% Similarity=0.277 Sum_probs=208.2
Q ss_pred CCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEc
Q 043567 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL 506 (911)
Q Consensus 427 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 506 (911)
+++.++++++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 7999999999998 566655 378999999999998 555555689999999999999999998999999999999999
Q ss_pred cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccc--cccchhhccCCCCcEEEccCcccc
Q 043567 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFE--GNIPVQLLNHRRLQLFSVSENYLS 584 (911)
Q Consensus 507 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~ls~n~l~ 584 (911)
++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.++ +..|..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 5666554 89999999999999777778999999999999999996 3667777777 8999999999988
Q ss_pred cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567 585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664 (911)
Q Consensus 585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~ 664 (911)
+...... ++|++|++++|++++..|..+..+++|+.|++++|++++..|.++..+++|++|++++|+++ .+|..+..
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 7443322 67888888888888777778888888888888888888777777888888888888888887 77878888
Q ss_pred CCCCCeEEcCCCcCCCCCCccc
Q 043567 665 LTGLGMMDLSHNKFNGSIPSCF 686 (911)
Q Consensus 665 l~~L~~L~Ls~N~l~g~ip~~~ 686 (911)
+++|+.|++++|++++..+..|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCCEEECCCCCCCccChhHc
Confidence 8888888888888875444443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=277.70 Aligned_cols=289 Identities=21% Similarity=0.213 Sum_probs=148.6
Q ss_pred CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM 530 (911)
Q Consensus 451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 530 (911)
+++.++++++.++ .+|..+ .++++.|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4666666666665 444322 234455555555554444444444455555555555544444444444444444444
Q ss_pred cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccc--c
Q 043567 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS--G 608 (911)
Q Consensus 531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~--~ 608 (911)
++|+++ .+|..+. ++|++|++++|.+++..+..+.+++ +|++|++++|.+. +
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-----------------------~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-----------------------QMIVVELGTNPLKSSG 161 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT-----------------------TCCEEECCSSCCCGGG
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCc-----------------------cccEEECCCCcCCccC
Confidence 444444 2333222 3444444444444433333344444 4444444444442 2
Q ss_pred cccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccc
Q 043567 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTN 688 (911)
Q Consensus 609 ~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 688 (911)
..+..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++..|..+..+++|+.|+|++|++++..|..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 33445555556666666666555 2344332 45666666666666555566666666666666666655433333222
Q ss_pred ccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEE
Q 043567 689 ITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLD 768 (911)
Q Consensus 689 l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 768 (911)
+++|+.|+
T Consensus 239 ------------------------------------------------------------------------l~~L~~L~ 246 (330)
T 1xku_A 239 ------------------------------------------------------------------------TPHLRELH 246 (330)
T ss_dssp ------------------------------------------------------------------------STTCCEEE
T ss_pred ------------------------------------------------------------------------CCCCCEEE
Confidence 12455566
Q ss_pred cccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc------CCCCEEeccCCcCcc--cCCCCCCCCCCCCeEe
Q 043567 769 LSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL------KMIESLDLSHNRLSG--QIPPKLTELNFLSNFN 840 (911)
Q Consensus 769 Ls~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~ 840 (911)
+++|+++ .+|..+..+++|++|++++|++++..+..|... ..|+.|++++|.+.. ..|..+..+..++.++
T Consensus 247 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred CCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence 6666666 566666666666666666666665555555332 556666666666642 3445566666666666
Q ss_pred ccCCc
Q 043567 841 VSYNN 845 (911)
Q Consensus 841 ls~N~ 845 (911)
+++|+
T Consensus 326 L~~N~ 330 (330)
T 1xku_A 326 LGNYK 330 (330)
T ss_dssp C----
T ss_pred ecccC
Confidence 66663
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-29 Score=276.57 Aligned_cols=252 Identities=20% Similarity=0.238 Sum_probs=208.5
Q ss_pred ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 504 (911)
..+++.++++++.++ .+|..+ .+.+++|++++|+++ .++...+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 347899999999988 456544 368999999999998 5665556899999999999999999889999999999999
Q ss_pred EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEccCcc
Q 043567 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENY 582 (911)
Q Consensus 505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~n~ 582 (911)
++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 99999998 5666554 799999999999998877889999999999999999963 677888999999999999999
Q ss_pred cccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhh
Q 043567 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQI 662 (911)
Q Consensus 583 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l 662 (911)
++....... ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+
T Consensus 183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 886543332 67888888888888777777888888888888888888777777888888888888888887 677777
Q ss_pred hcCCCCCeEEcCCCcCCCCCCccc
Q 043567 663 CQLTGLGMMDLSHNKFNGSIPSCF 686 (911)
Q Consensus 663 ~~l~~L~~L~Ls~N~l~g~ip~~~ 686 (911)
..+++|++|++++|++++..+..|
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ccCCCcCEEECCCCcCCccChhhc
Confidence 888888888888888775444333
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.4e-32 Score=314.34 Aligned_cols=377 Identities=19% Similarity=0.103 Sum_probs=225.7
Q ss_pred CCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC-----CCChhhhccCC
Q 043567 279 TSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-----VIPPFLLHQFD 353 (911)
Q Consensus 279 ~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~ip~~l~~~~~ 353 (911)
++|++|++++|+++.......+..+++|++|+++ +|.+. .++..+..+++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-------------------------~~~l~~~~~~~l~~~l~~~~~ 57 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-------------------------DCGLTEARCKDISSALRVNPA 57 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-------------------------SSCCCHHHHHHHHHHHHTCTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEcc-------------------------CCCCCHHHHHHHHHHHHhCCC
Confidence 4577888888877643322335566666666555 44443 34555666677
Q ss_pred CCEEECCCCCCCCCCchhhhhcCC----cccEEEccCCccccc----cCCCCCCCCCccEEEccCCcCCcCCChhHHHh-
Q 043567 354 LKYLDLSHNDLDGAFPTWALQNNT----KLEVLLLTNNSFTGN----LQLPDDKHDFLHHLDISSNNFTGKLPQDMGII- 424 (911)
Q Consensus 354 L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~- 424 (911)
|++|++++|.+++..+..++..++ +|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+...
T Consensus 58 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 137 (461)
T 1z7x_W 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH
Confidence 777777777766444444444455 577777777776632 12234566777777777777765444444332
Q ss_pred ---ccCCcEEEcccCcccccc----chhhhcCCCCcEEeccCcccCCcccHHHHh----cccccceeeccCcccccc---
Q 043567 425 ---LQKLLYMDMSNNHFEGNI----ASSIAEMKELRFLDLSKNNFSGELSAALLT----SCFSLLWLGLSDNNFYGR--- 490 (911)
Q Consensus 425 ---l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~----~~~~L~~L~L~~n~l~~~--- 490 (911)
.++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+.. ..++|+.|++++|.+++.
T Consensus 138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 235888888888777643 555666778888888888776443333322 234677777777766653
Q ss_pred -cCCCCCCCCCCCEEEccCccccccc-----cccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccc
Q 043567 491 -IFPGYMNLTQLQYLYLENNKFSGKI-----EEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFE 560 (911)
Q Consensus 491 -~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 560 (911)
++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 3444556677777777777766432 22222466777777777776643 4555566677777777777666
Q ss_pred cccchhhccC-----CCCcEEEccCccccccc----Cccc-ccccccEEEcccCcccccccccccC-----CCCCCEEeC
Q 043567 561 GNIPVQLLNH-----RRLQLFSVSENYLSGFM----TTSF-NISSVEHLYLQKNSLSGPIPIALFR-----SSNLLTLDL 625 (911)
Q Consensus 561 ~~~p~~l~~~-----~~L~~L~ls~n~l~~~~----~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~L 625 (911)
+..+..+... ++|+.|++++|.+++.. +..+ .+++|++|++++|++++..+..+.. .++|++|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 5444333322 56777777777666542 2222 4566777777777666554443332 456777777
Q ss_pred CCCcccc----cCchhhhcCCCccEEEccCCcccccCChhhh-----cCCCCCeEEcCCCcCCC
Q 043567 626 RDNGFSG----VIPHQINECSNLRFLLLRGNNLEGQIPNQIC-----QLTGLGMMDLSHNKFNG 680 (911)
Q Consensus 626 s~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~-----~l~~L~~L~Ls~N~l~g 680 (911)
++|++++ .+|..+..+++|++|++++|++++.-...+. ....|+.|++.++.+..
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 7777765 5666666677777777777776643222221 12356666666665543
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.1e-30 Score=282.71 Aligned_cols=284 Identities=20% Similarity=0.205 Sum_probs=182.3
Q ss_pred CCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeecCCCCcEEEEecCCCCcccccccccccC
Q 043567 35 KACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYG 114 (911)
Q Consensus 35 ~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~ 114 (911)
.++..+|++||++||+++. .|+.+.+++|........++|.|.||+|......+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~-----~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l--------------------- 75 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYN-----ADRNRWHSAWRQANSNNPQIETRTGRALKATADLL--------------------- 75 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHH-----HCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHH---------------------
T ss_pred cccCchHHHHHHHHHHhcc-----CCchhhhhhhcccccccccccccCCcchhhhHHHH---------------------
Confidence 3466789999999999884 24556678894111113689999999995310000
Q ss_pred CcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccC
Q 043567 115 DMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQ 194 (911)
Q Consensus 115 ~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 194 (911)
.....+++++|+|++|.++. +| ..++++++|++|++++|.+. .+|..++++++|++|+|++|.+.
T Consensus 76 ---------~~~~~~~l~~L~L~~n~l~~-lp----~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 76 ---------EDATQPGRVALELRSVPLPQ-FP----DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp ---------HHHTSTTCCEEEEESSCCSS-CC----SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC
T ss_pred ---------hcccccceeEEEccCCCchh-cC----hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc
Confidence 00123456666666666653 33 34556666777777777666 56666666777777777777666
Q ss_pred CccChhhhcCCCCCCEEeCCCCCCCCccCccc--------ccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCc
Q 043567 195 GSRTKQGLSKLKNLEALDLSSNFINGSLESQG--------ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266 (911)
Q Consensus 195 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~--------~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 266 (911)
.+| ..+.++++|++|++++|++.+.+|... +.++++|++|++++|.++ .+|..++++++|++|++++|+
T Consensus 141 -~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 141 -ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp -CCC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred -cCc-HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 455 356667777777777766666666431 234777777777777777 467777777777777777777
Q ss_pred CCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCC-CCCC
Q 043567 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL-NVIP 345 (911)
Q Consensus 267 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip 345 (911)
+++ +|..++.+++|++|++++|.+.+.+| ..++.+++|+. |++++|.+ +.+|
T Consensus 218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~-------------------------L~L~~n~~~~~~p 270 (328)
T 4fcg_A 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKR-------------------------LILKDCSNLLTLP 270 (328)
T ss_dssp CCC-CCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCE-------------------------EECTTCTTCCBCC
T ss_pred CCc-CchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCE-------------------------EECCCCCchhhcc
Confidence 774 55567777777777777777776666 23444444333 33344433 4556
Q ss_pred hhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccc
Q 043567 346 PFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390 (911)
Q Consensus 346 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 390 (911)
..+..+++|++|++++|++.+.+|.++. ++++|+.+++..+.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHHH
Confidence 6667777777778888777777777654 6777777776655443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.8e-30 Score=303.68 Aligned_cols=380 Identities=13% Similarity=0.039 Sum_probs=231.8
Q ss_pred CCCCccEEEccCCcCCcCCChhHHHhccC-CcEEEcccCc-ccc-ccchhhhcCCCCcEEeccCcccCCccc---HHHHh
Q 043567 399 KHDFLHHLDISSNNFTGKLPQDMGIILQK-LLYMDMSNNH-FEG-NIASSIAEMKELRFLDLSKNNFSGELS---AALLT 472 (911)
Q Consensus 399 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~-L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~g~i~---~~~~~ 472 (911)
.+++|++|++++|.+++..+..+...+++ |++|++++|. ++. .++.....+++|++|++++|.+++.-. ..+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45667777777776665555555443444 7777777765 211 122233467777777777777654421 12345
Q ss_pred cccccceeeccCcccc----cccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCc---ccCCcCccC
Q 043567 473 SCFSLLWLGLSDNNFY----GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS---GHIPHWMGN 545 (911)
Q Consensus 473 ~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~ 545 (911)
.+++|+.|+++.|.+. +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6677777777777765 2233344566777777777777764 5666777777887777653322 234456667
Q ss_pred cCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcc-c-ccccccEEEcccCcccccccccccCCCCCCEE
Q 043567 546 LSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS-F-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTL 623 (911)
Q Consensus 546 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~-~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 623 (911)
+++|+.++++++. .+.+|..+..+++|++|++++|.+++..... + .+++|++|+++++-..+.++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 7777777777753 3356777777778888888877765544322 2 67778888887433333344445667778888
Q ss_pred eCC-----------CCccccc-CchhhhcCCCccEEEccCCcccccCChhhhc-CCCCCeEEcC----CCcCCCCCCc-c
Q 043567 624 DLR-----------DNGFSGV-IPHQINECSNLRFLLLRGNNLEGQIPNQICQ-LTGLGMMDLS----HNKFNGSIPS-C 685 (911)
Q Consensus 624 ~Ls-----------~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~-l~~L~~L~Ls----~N~l~g~ip~-~ 685 (911)
+++ .|.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++...+ .
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 888 3555543 2233455778888888888887777777765 7788888885 4555432110 0
Q ss_pred cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCcccc
Q 043567 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV 765 (911)
Q Consensus 686 ~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 765 (911)
+..+ ...+++|+
T Consensus 428 ~~~~--------------------------------------------------------------------~~~~~~L~ 439 (592)
T 3ogk_B 428 VRSL--------------------------------------------------------------------LIGCKKLR 439 (592)
T ss_dssp HHHH--------------------------------------------------------------------HHHCTTCC
T ss_pred HHHH--------------------------------------------------------------------HHhCCCCC
Confidence 0000 01134566
Q ss_pred EEEcccC--cccccCCccccC-CCCCCEEECCCCcCCc-cccccccccCCCCEEeccCCcCccc-CCCCCCCCCCCCeEe
Q 043567 766 GLDLSCN--KLTGEIPSEIGE-LQEIPVLNMSHNFLSE-SIPESFSNLKMIESLDLSHNRLSGQ-IPPKLTELNFLSNFN 840 (911)
Q Consensus 766 ~LdLs~N--~l~g~ip~~i~~-l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~ 840 (911)
.|+++++ .+++..+..++. +++|+.|+|++|++++ .+|..+..+++|+.|||++|++++. ++..+..++.|++|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 6777633 366555555543 6677777777777765 3455556667777777777776654 333334566777777
Q ss_pred ccCCcCee
Q 043567 841 VSYNNLSG 848 (911)
Q Consensus 841 ls~N~l~g 848 (911)
+++|++++
T Consensus 520 ls~n~it~ 527 (592)
T 3ogk_B 520 VQGYRASM 527 (592)
T ss_dssp EESCBCCT
T ss_pred CcCCcCCH
Confidence 77777654
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.1e-30 Score=305.57 Aligned_cols=347 Identities=11% Similarity=0.045 Sum_probs=206.7
Q ss_pred ccCCcEEEcccCccccc----cchhhhcCCCCcEEeccCcccCCcc---cHHHHhcccccceeeccCcccccccCCCCCC
Q 043567 425 LQKLLYMDMSNNHFEGN----IASSIAEMKELRFLDLSKNNFSGEL---SAALLTSCFSLLWLGLSDNNFYGRIFPGYMN 497 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~g~i---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 497 (911)
+++|++|++++|.+++. ++..+..+++|++|++++|.+++.- -..++..+++|+.|++++|.+.+ ++..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 44555555555544433 2223344455555555555543111 01122344555555555554443 2333444
Q ss_pred CCCCCEEEccCcccc---ccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccc-hhhccCCCC
Q 043567 498 LTQLQYLYLENNKFS---GKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP-VQLLNHRRL 573 (911)
Q Consensus 498 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L 573 (911)
+++|++|+++..... +..+..+..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 555555555532211 12334455566666666666432 3456666667777777777776654433 335667777
Q ss_pred cEEEccCcccccccCccc-ccccccEEEccc-----------Cccccc-ccccccCCCCCCEEeCCCCcccccCchhhhc
Q 043567 574 QLFSVSENYLSGFMTTSF-NISSVEHLYLQK-----------NSLSGP-IPIALFRSSNLLTLDLRDNGFSGVIPHQINE 640 (911)
Q Consensus 574 ~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~-----------n~l~~~-~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~ 640 (911)
+.|+++++...+.++... .+++|++|++++ |.+++. ++.....+++|++|+++.|++++..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 777777332223333333 567777777773 455543 2333455788888888888888777777765
Q ss_pred -CCCccEEEcc----CCccccc-----CChhhhcCCCCCeEEcCCCc--CCCCCCcccccccccccCCccccccccchhh
Q 043567 641 -CSNLRFLLLR----GNNLEGQ-----IPNQICQLTGLGMMDLSHNK--FNGSIPSCFTNITLWSVGNLDRYRLEHLTFV 708 (911)
Q Consensus 641 -l~~L~~L~L~----~N~l~~~-----ip~~l~~l~~L~~L~Ls~N~--l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l 708 (911)
+++|++|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+.
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--------------------- 459 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--------------------- 459 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH---------------------
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH---------------------
Confidence 8888888886 6777753 44456778899999997654 3322111111
Q ss_pred hhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccc-cCCccccCCCC
Q 043567 709 ERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG-EIPSEIGELQE 787 (911)
Q Consensus 709 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~i~~l~~ 787 (911)
..+++|+.|++++|++++ .++..+..+++
T Consensus 460 --------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 460 --------------------------------------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp --------------------------------------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred --------------------------------------------------HhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 113468889999999886 45666688899
Q ss_pred CCEEECCCCcCCcc-ccccccccCCCCEEeccCCcCcccCCCCC-CCCCCCCeEeccCC
Q 043567 788 IPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIPPKL-TELNFLSNFNVSYN 844 (911)
Q Consensus 788 L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~ls~N 844 (911)
|++|+|++|.+++. ++..+..+++|+.|+|++|++++.-...+ ..++.+....+..+
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999999998766 45555678999999999999886533333 24555555555444
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.9e-28 Score=263.37 Aligned_cols=234 Identities=17% Similarity=0.203 Sum_probs=173.7
Q ss_pred CCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEE
Q 043567 522 SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLY 600 (911)
Q Consensus 522 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~ 600 (911)
.+.+++|++++|+++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+ .+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888888 77888888888888888888888 78877877777777777777766 334434 555666666
Q ss_pred cccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567 601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG 680 (911)
Q Consensus 601 Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 680 (911)
+++|++.+.+|..+... .++..+..+++|++|++++|+++ .+|..++.+++|++|+|++|++++
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 66655555555544320 01122344778888888888877 777778888888888888888774
Q ss_pred CCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCc
Q 043567 681 SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSN 760 (911)
Q Consensus 681 ~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (911)
+|..+..
T Consensus 221 -l~~~l~~------------------------------------------------------------------------ 227 (328)
T 4fcg_A 221 -LGPAIHH------------------------------------------------------------------------ 227 (328)
T ss_dssp -CCGGGGG------------------------------------------------------------------------
T ss_pred -Cchhhcc------------------------------------------------------------------------
Confidence 4443332
Q ss_pred CccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEe
Q 043567 761 LDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFN 840 (911)
Q Consensus 761 l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 840 (911)
+++|+.|++++|++.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.|||++|++.|.+|..+.+++.|+.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 23567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCCcCe
Q 043567 841 VSYNNLS 847 (911)
Q Consensus 841 ls~N~l~ 847 (911)
++.|.+.
T Consensus 308 l~~~~~~ 314 (328)
T 4fcg_A 308 VPPHLQA 314 (328)
T ss_dssp CCGGGSC
T ss_pred CCHHHHH
Confidence 8876554
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.3e-27 Score=256.76 Aligned_cols=251 Identities=20% Similarity=0.243 Sum_probs=185.0
Q ss_pred CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEcc
Q 043567 502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVS 579 (911)
Q Consensus 502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls 579 (911)
+.++.+++.++ .+|..+ .++|++|++++|+++...+..+..+++|++|++++|.++. ..|..+..+
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------- 77 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT--------- 77 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC---------
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc---------
Confidence 45666666665 444433 2466666666666664333345666666666666666552 223444444
Q ss_pred CcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCc-hhhhcCCCccEEEccCCcccccC
Q 043567 580 ENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIP-HQINECSNLRFLLLRGNNLEGQI 658 (911)
Q Consensus 580 ~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i 658 (911)
++|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus 78 --------------~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 78 --------------TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp --------------SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred --------------cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 45555555555555 356667778888888888888876544 56788888888888888888888
Q ss_pred ChhhhcCCCCCeEEcCCCcCCC-CCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCc
Q 043567 659 PNQICQLTGLGMMDLSHNKFNG-SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPF 737 (911)
Q Consensus 659 p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 737 (911)
|..+..+++|++|++++|.+++ .+|..+..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------------------- 173 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------------------- 173 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------------------------
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhh-------------------------------------------------
Confidence 8888888888888888888775 34443332
Q ss_pred ccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEec
Q 043567 738 TFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDL 817 (911)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL 817 (911)
+++|+.||+++|++++..|..+..+++|++|+|++|++++..+..++.+++|+.||+
T Consensus 174 -----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 174 -----------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp -----------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred -----------------------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 346788999999999888889999999999999999999888888999999999999
Q ss_pred cCCcCcccCCCCCCCCC-CCCeEeccCCcCeecCC
Q 043567 818 SHNRLSGQIPPKLTELN-FLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 818 s~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP 851 (911)
++|++++.+|..+..++ .|++|++++|++++..+
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99999999999999884 89999999999988643
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.4e-28 Score=267.35 Aligned_cols=183 Identities=14% Similarity=0.143 Sum_probs=111.4
Q ss_pred CCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEcc
Q 043567 500 QLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS 579 (911)
Q Consensus 500 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls 579 (911)
+|++|++++|++++..+..+..+++|++|++++|++++..|..++++++|++|++++|++++..+..+.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666665444456666666666666666665555666666666666666666664333346666666666666
Q ss_pred CcccccccC-ccc-ccccccEEEcccCc-ccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc
Q 043567 580 ENYLSGFMT-TSF-NISSVEHLYLQKNS-LSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG 656 (911)
Q Consensus 580 ~n~l~~~~~-~~~-~~~~L~~L~Ls~n~-l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 656 (911)
+|.+++..+ ..+ .+++|++|++++|. +.+..|..+.++++|++|++++|++++..|..+..+++|++|++++|++..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 666665444 233 56666666666663 444445566666667777777777766666667777777777777776653
Q ss_pred cCChhhhcCCCCCeEEcCCCcCCCCC
Q 043567 657 QIPNQICQLTGLGMMDLSHNKFNGSI 682 (911)
Q Consensus 657 ~ip~~l~~l~~L~~L~Ls~N~l~g~i 682 (911)
..+..+..+++|+.|++++|++++..
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred chhhhhhhcccccEEECCCCcccccc
Confidence 22222334666667777666666433
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=268.58 Aligned_cols=280 Identities=16% Similarity=0.167 Sum_probs=237.3
Q ss_pred CCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEE
Q 043567 497 NLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLF 576 (911)
Q Consensus 497 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 576 (911)
.++.....+.+++.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..|..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4455566788888888 5676553 589999999999997777789999999999999999998888889999999999
Q ss_pred EccCcccccccCccc-ccccccEEEcccCccccccc-ccccCCCCCCEEeCCCC-cccccCchhhhcCCCccEEEccCCc
Q 043567 577 SVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIP-IALFRSSNLLTLDLRDN-GFSGVIPHQINECSNLRFLLLRGNN 653 (911)
Q Consensus 577 ~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p-~~l~~~~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~ 653 (911)
++++|.+++..+..+ .+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..|..+..+++|++|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999998777656 89999999999999985333 37889999999999999 5776777889999999999999999
Q ss_pred ccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCC
Q 043567 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE 733 (911)
Q Consensus 654 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~ 733 (911)
+++..|..+..+++|++|++++|+++ .+|..+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~---------------------------------------------- 218 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV---------------------------------------------- 218 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCST-THHHHHH----------------------------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccc-cchhhhh----------------------------------------------
Confidence 99999999999999999999999975 3333211
Q ss_pred CCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCcccc---CCCCCCEEECCCCcCCc----cccccc
Q 043567 734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG---ELQEIPVLNMSHNFLSE----SIPESF 806 (911)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~---~l~~L~~L~Ls~N~l~g----~ip~~l 806 (911)
..+++|+.|++++|++++..+..+. ....++.++|++|.+++ .+|+.+
T Consensus 219 -------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 219 -------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp -------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred -------------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 0134788899999999987665543 46778999999999987 489999
Q ss_pred cccCCCCEEeccCCcCcccCCCC-CCCCCCCCeEeccCCcCeecCCC
Q 043567 807 SNLKMIESLDLSHNRLSGQIPPK-LTELNFLSNFNVSYNNLSGLIPD 852 (911)
Q Consensus 807 ~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 852 (911)
+++++|+.||+++|+++ .+|.. +..++.|++|++++|++++..|.
T Consensus 274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 99999999999999999 67766 58999999999999999998874
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.2e-28 Score=260.76 Aligned_cols=198 Identities=22% Similarity=0.227 Sum_probs=134.8
Q ss_pred ceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCccc--CCcCccCcCCCcEEEcc
Q 043567 478 LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGH--IPHWMGNLSYLEVLLMS 555 (911)
Q Consensus 478 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~ 555 (911)
+.++.+++.++. +|..+ .++|++|++++|+++...+..+..+++|++|++++|+++.. .|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 567888888764 44433 36899999999999955555688999999999999999833 36677789999999999
Q ss_pred CcccccccchhhccCCCCcEEEccCcccccccC-ccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccc-
Q 043567 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMT-TSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG- 632 (911)
Q Consensus 556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~-~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~- 632 (911)
+|.++ .+|..+..+++|++|++++|.+++..+ ..+ .+++|++|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99998 577778888888888888888876654 223 55555666665555555555555555555555555555554
Q ss_pred cCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567 633 VIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 633 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
.+|..+..+++|++|++++|++++..|..+..+++|+.|+|++|+++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 34555555555555555555555444555555555555555555444
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2e-28 Score=265.63 Aligned_cols=206 Identities=20% Similarity=0.213 Sum_probs=137.9
Q ss_pred cCCCCcEEEccCcccccccCccc---ccccccEEEcccCcccccccccccCC-----CCCCEEeCCCCcccccCchhhhc
Q 043567 569 NHRRLQLFSVSENYLSGFMTTSF---NISSVEHLYLQKNSLSGPIPIALFRS-----SNLLTLDLRDNGFSGVIPHQINE 640 (911)
Q Consensus 569 ~~~~L~~L~ls~n~l~~~~~~~~---~~~~L~~L~Ls~n~l~~~~p~~l~~~-----~~L~~L~Ls~N~l~~~~p~~l~~ 640 (911)
++++|++|++++|.+++.+|..+ .+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 44555555555555555444431 455566666666666554 5555544 67777777777777666677777
Q ss_pred CCCccEEEccCCccccc--CChhh--hcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccc
Q 043567 641 CSNLRFLLLRGNNLEGQ--IPNQI--CQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI 716 (911)
Q Consensus 641 l~~L~~L~L~~N~l~~~--ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~ 716 (911)
+++|++|++++|++.+. +|..+ ..+++|++|+|++|++++ +|.....+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~--------------------------- 223 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSAL--------------------------- 223 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHH---------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHH---------------------------
Confidence 77777777777777654 23344 677778888888777762 11100000
Q ss_pred ccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC-ccccCCCCCCEEECCC
Q 043567 717 GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP-SEIGELQEIPVLNMSH 795 (911)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~i~~l~~L~~L~Ls~ 795 (911)
...++.|+.||+++|++++.+| ..+..+++|++|+|++
T Consensus 224 -----------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 224 -----------------------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp -----------------------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred -----------------------------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 0113467778888888887775 4566678888888888
Q ss_pred CcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567 796 NFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849 (911)
Q Consensus 796 N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 849 (911)
|+++ .+|..+. ++|++|||++|++++. |. +..++.|++|++++|++++.
T Consensus 263 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 263 TGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8888 7787777 7888888888888876 65 88888888888888888763
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-28 Score=265.34 Aligned_cols=265 Identities=18% Similarity=0.184 Sum_probs=188.9
Q ss_pred EEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccc
Q 043567 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL 583 (911)
Q Consensus 504 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l 583 (911)
.+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3344444433333333344455555555555554444455555555555555555554333 55555666666666655
Q ss_pred ccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhh
Q 043567 584 SGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC 663 (911)
Q Consensus 584 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~ 663 (911)
++..+ .++|++|++++|++++..+.. +++|++|++++|++++..|..++.+++|++|++++|++++..|..+.
T Consensus 93 ~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 93 QELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 54332 366777777777776554433 46788899999988887777888889999999999999887777774
Q ss_pred -cCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccc
Q 043567 664 -QLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL 742 (911)
Q Consensus 664 -~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 742 (911)
.+++|++|+|++|.+++. |..
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~~~--------------------------------------------------------- 187 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-KGQ--------------------------------------------------------- 187 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-ECC---------------------------------------------------------
T ss_pred hccCcCCEEECCCCcCccc-ccc---------------------------------------------------------
Confidence 788999999999987632 110
Q ss_pred eeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcC
Q 043567 743 VEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822 (911)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 822 (911)
..++.|+.||+++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.||+++|++
T Consensus 188 ----------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 188 ----------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp ----------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred ----------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 013578889999999995 5666999999999999999998 5788899999999999999999
Q ss_pred c-ccCCCCCCCCCCCCeEecc-CCcCeecCCCC
Q 043567 823 S-GQIPPKLTELNFLSNFNVS-YNNLSGLIPDK 853 (911)
Q Consensus 823 ~-g~ip~~l~~l~~L~~L~ls-~N~l~g~iP~~ 853 (911)
+ +.+|..+..++.|++++++ .+.++|..|..
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 9 8888899999999999999 66788877754
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.3e-26 Score=258.99 Aligned_cols=247 Identities=21% Similarity=0.183 Sum_probs=160.7
Q ss_pred CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCc
Q 043567 502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN 581 (911)
Q Consensus 502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n 581 (911)
..++.++..++ .+|..+ .+++++|++++|++++..|..|.++++|+.|++++|.+++..|..+.++
T Consensus 57 ~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l----------- 122 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL----------- 122 (452)
T ss_dssp CEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred cEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc-----------
Confidence 44555555554 344333 2455555555555555555555555555555555555554444444444
Q ss_pred ccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-h
Q 043567 582 YLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP-N 660 (911)
Q Consensus 582 ~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-~ 660 (911)
++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+.++++|++|++++|+..+.+| .
T Consensus 123 ------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 123 ------------ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp ------------TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred ------------ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 455555555555554444456666677777777777765555566777777777777744433443 3
Q ss_pred hhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccc
Q 043567 661 QICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFD 740 (911)
Q Consensus 661 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 740 (911)
.+..+++|+.|+|++|++++ +|. +
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~-~~~-~------------------------------------------------------ 214 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKD-MPN-L------------------------------------------------------ 214 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSS-CCC-C------------------------------------------------------
T ss_pred hccCCCCCCEEECCCCcccc-ccc-c------------------------------------------------------
Confidence 56677777777777777763 221 1
Q ss_pred cceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCC
Q 043567 741 YLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHN 820 (911)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 820 (911)
..+++|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|
T Consensus 215 ------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 215 ------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp ------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 11346777888888888777888888888888888888888888888888888888888888
Q ss_pred cCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567 821 RLSGQIPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 821 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
++++..+..+..++.|++|++++|++..
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCCccChHHhccccCCCEEEccCCCcCC
Confidence 8887777777888888888888887654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8.7e-26 Score=257.41 Aligned_cols=248 Identities=22% Similarity=0.217 Sum_probs=158.0
Q ss_pred CCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccC
Q 043567 501 LQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE 580 (911)
Q Consensus 501 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~ 580 (911)
.+.++.++..++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..+.++++|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L------- 114 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL------- 114 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC-------
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC-------
Confidence 345555555555 4444332 455566666666555555555555555555555555554444445555444
Q ss_pred cccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-
Q 043567 581 NYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP- 659 (911)
Q Consensus 581 n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip- 659 (911)
++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+..+.++
T Consensus 115 ----------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 115 ----------------NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp ----------------CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ----------------CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 455555555543334455666666666666666665555566667777777777644333333
Q ss_pred hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccc
Q 043567 660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739 (911)
Q Consensus 660 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 739 (911)
..+..+++|+.|+|++|+++ .+|. +
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~----------------------------------------------------- 203 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-EIPN-L----------------------------------------------------- 203 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-SCCC-C-----------------------------------------------------
T ss_pred chhhcccccCeecCCCCcCc-cccc-c-----------------------------------------------------
Confidence 35667777777777777765 2331 1
Q ss_pred ccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccC
Q 043567 740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819 (911)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 819 (911)
..+++|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++
T Consensus 204 -------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 204 -------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp -------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred -------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 1134567788888888777777788888888888888888877777788888888888888
Q ss_pred CcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567 820 NRLSGQIPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 820 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
|++++..+..+..++.|++|+|++|++..
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88887777777778888888888887754
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.6e-28 Score=262.69 Aligned_cols=254 Identities=20% Similarity=0.196 Sum_probs=166.3
Q ss_pred hcccccceeeccCcccccccCCCCCCCCCCCEEEccCcccc-cccccccc-------CCCCCcEEECcCCcCcccCCcCc
Q 043567 472 TSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS-GKIEEGLL-------KSKKLVELRMSSNMLSGHIPHWM 543 (911)
Q Consensus 472 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l 543 (911)
...++|+.+++++|.+ .+|..+... |+.|++++|+++ +.+|..+. .+++|++|++++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455666777777666 444433322 666666666663 33444333 45566666666666665555544
Q ss_pred --cCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCC
Q 043567 544 --GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLL 621 (911)
Q Consensus 544 --~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~ 621 (911)
+.+++|++|++++|++++. |..+..+... .+++|++|++++|++++..|..++.+++|+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~------------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQW------------------LKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT------------------CCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHh------------------hcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 5555555555555555544 4444333000 015666666677777666667777777888
Q ss_pred EEeCCCCccccc--Cchhh--hcCCCccEEEccCCcccc--cCC-hhhhcCCCCCeEEcCCCcCCCCCCccccccccccc
Q 043567 622 TLDLRDNGFSGV--IPHQI--NECSNLRFLLLRGNNLEG--QIP-NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694 (911)
Q Consensus 622 ~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~L~~N~l~~--~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~ 694 (911)
+|++++|++.+. +|..+ +.+++|++|++++|++++ .++ ..+..+++|+.|+|++|++++.+|....
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------- 249 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC------- 249 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC-------
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh-------
Confidence 888888877654 23344 777888888888888873 233 3335678888888888888876542110
Q ss_pred CCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcc
Q 043567 695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKL 774 (911)
Q Consensus 695 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 774 (911)
..++.|+.||+++|++
T Consensus 250 ----------------------------------------------------------------~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 250 ----------------------------------------------------------------DWPSQLNSLNLSFTGL 265 (312)
T ss_dssp ----------------------------------------------------------------CCCTTCCEEECTTSCC
T ss_pred ----------------------------------------------------------------hhcCCCCEEECCCCcc
Confidence 0134678899999999
Q ss_pred cccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567 775 TGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824 (911)
Q Consensus 775 ~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 824 (911)
+ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 266 K-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp S-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8 8888777 8899999999999876 66 8899999999999999886
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.6e-26 Score=247.31 Aligned_cols=254 Identities=18% Similarity=0.214 Sum_probs=154.9
Q ss_pred CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCc
Q 043567 502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN 581 (911)
Q Consensus 502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n 581 (911)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34444444444 233322 345555555555555444445555555555555555555444444444444444444444
Q ss_pred ccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh
Q 043567 582 YLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ 661 (911)
Q Consensus 582 ~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~ 661 (911)
.. +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus 91 ~~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 91 AQ----------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp TT----------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CC----------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 30 33333455566666777777777766666666677777777777777776555555
Q ss_pred hhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccc
Q 043567 662 ICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDY 741 (911)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 741 (911)
+..+++|+.|++++|++++..+..+..
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------- 175 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRG----------------------------------------------------- 175 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTT-----------------------------------------------------
T ss_pred hccCCCccEEECCCCcccccCHHHhcC-----------------------------------------------------
Confidence 667777777777777766433322222
Q ss_pred ceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCc
Q 043567 742 LVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR 821 (911)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ 821 (911)
++.|+.|++++|++++..|..++.+++|+.|++++|++++..|..++.+++|+.|++++|.
T Consensus 176 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 -------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred -------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 2356677788888877777788888888888888888887777778888888888888888
Q ss_pred CcccCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567 822 LSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK 853 (911)
Q Consensus 822 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 853 (911)
+++..+.. .-...++.+..+.|.+.+..|..
T Consensus 237 ~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 237 WVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp EECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 87654421 11123445557778888877754
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.5e-29 Score=298.93 Aligned_cols=408 Identities=15% Similarity=0.116 Sum_probs=228.8
Q ss_pred cccCCCCCCEEeCCCCCCCcccC---cc--------cccccCCCCCCcEEeCCCCCCCccchhhhc-CCCCCCEEEcCCc
Q 043567 124 LFHPFEELQSLDLSNNSFEGVYE---NQ--------AYDTLGSLKRLKILNLGYNYFDDSIFLYLN-ALTSLTTLILREN 191 (911)
Q Consensus 124 ~~~~l~~L~~L~Ls~n~l~~~~~---~~--------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n 191 (911)
.+..+++|++|+++++....... .. +......+++|++|++++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 46778999999999986432211 00 001124577888888888888877777765 6888888888888
Q ss_pred -ccCCccChhhhcCCCCCCEEeCCCCCCCCccCc---ccccCCCCCCEEeccCCc--CCCC-CCcccCCCCCCcEEEccC
Q 043567 192 -NIQGSRTKQGLSKLKNLEALDLSSNFINGSLES---QGICELKNLFVLNLEKNN--IEDH-LPNCLNNMTRLKVLDISF 264 (911)
Q Consensus 192 -~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~Ls~ 264 (911)
.+.+......+.++++|++|++++|.+++..+. .....+++|++|++++|. +... ++..+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 444322223445788888888888876643221 122366788888888776 2211 111223467788888877
Q ss_pred CcCCccCcccccCCCCCCeeeccCCc-------CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECC
Q 043567 265 NQLSGSFPSIISNLTSLEYLALFDNN-------FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLP 337 (911)
Q Consensus 265 n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 337 (911)
|...+.+|..+..+++|++|+++.+. +.+ ++ ..+.++++|+.+. .+.
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~-~~l~~~~~L~~Ls------------------------~~~ 274 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LS-VALSGCKELRCLS------------------------GFW 274 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HH-HHHHTCTTCCEEE------------------------CCB
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HH-HHHhcCCCccccc------------------------CCc
Confidence 73222366677777778877765443 111 11 1344555555441 222
Q ss_pred CCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCC-CCCCCCccEEEccC------
Q 043567 338 NCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLP-DDKHDFLHHLDISS------ 410 (911)
Q Consensus 338 ~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~ls~------ 410 (911)
+.....++..+..+++|++|++++|.+++.....+...+++|++|++++| +....... ...+++|++|++++
T Consensus 275 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp TCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred ccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccc
Confidence 22223455555566777777777777654434444456677777777766 32110000 11356666666632
Q ss_pred ---CcCCcCCChhHHHhccCCcEEEcccCccccccchhhh-cCCCCcEEecc--C----cccCCccc-----HHHHhccc
Q 043567 411 ---NNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIA-EMKELRFLDLS--K----NNFSGELS-----AALLTSCF 475 (911)
Q Consensus 411 ---n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls--~----n~l~g~i~-----~~~~~~~~ 475 (911)
+.+++.....+...+++|++|.+..|.+++..+..+. .+++|++|+++ + +.++ ..| ..++..++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCC
Confidence 3333322233333467777777777777665555554 46777777777 3 3443 111 11234556
Q ss_pred ccceeeccCcccccccCCCCCC-CCCCCEEEccCccccccccccc-cCCCCCcEEECcCCcCcccCCc-CccCcCCCcEE
Q 043567 476 SLLWLGLSDNNFYGRIFPGYMN-LTQLQYLYLENNKFSGKIEEGL-LKSKKLVELRMSSNMLSGHIPH-WMGNLSYLEVL 552 (911)
Q Consensus 476 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L 552 (911)
+|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. .+..+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 666666654 444433333333 5566666666666654433333 4456666666666665433222 33345566666
Q ss_pred EccCcccc
Q 043567 553 LMSKNFFE 560 (911)
Q Consensus 553 ~L~~n~l~ 560 (911)
++++|.++
T Consensus 512 ~l~~~~~~ 519 (594)
T 2p1m_B 512 WMSSCSVS 519 (594)
T ss_dssp EEESSCCB
T ss_pred eeeCCCCC
Confidence 66666554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.1e-26 Score=246.44 Aligned_cols=210 Identities=22% Similarity=0.220 Sum_probs=178.4
Q ss_pred CCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCc-ccccCchhhhcCCCccEEE
Q 043567 571 RRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNG-FSGVIPHQINECSNLRFLL 648 (911)
Q Consensus 571 ~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~ 648 (911)
+++++|++++|.+++..+..+ .+++|++|++++|.+++..|..+..+++|++|++++|. +.+..|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355555555555555554444 56677777777777776678888999999999999998 8777688999999999999
Q ss_pred ccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCC
Q 043567 649 LRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQ 728 (911)
Q Consensus 649 L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 728 (911)
+++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------- 151 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD---------------------------------------- 151 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------------------------------
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc----------------------------------------
Confidence 9999999888999999999999999999998655444432
Q ss_pred CCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccc
Q 043567 729 LSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSN 808 (911)
Q Consensus 729 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~ 808 (911)
+++|+.|++++|++++..+..+..+++|++|+|++|++++..|..+++
T Consensus 152 --------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 152 --------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp --------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred --------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 347888999999999777778999999999999999999999999999
Q ss_pred cCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567 809 LKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852 (911)
Q Consensus 809 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 852 (911)
+++|+.||+++|++++..|..+..++.|++|++++|++.+..+.
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 99999999999999987777799999999999999999987664
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8.9e-28 Score=261.09 Aligned_cols=249 Identities=21% Similarity=0.204 Sum_probs=177.3
Q ss_pred CCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEE
Q 043567 498 LTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFS 577 (911)
Q Consensus 498 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 577 (911)
+++|++|++++|++++..|..+..+++|++|++++|++++..+ +..+++|++|++++|.+++. + ..++|+.|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEE
Confidence 3445555555555554444455555555555555555554333 55555555555555555532 1 225666666
Q ss_pred ccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhh-hcCCCccEEEccCCcccc
Q 043567 578 VSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRGNNLEG 656 (911)
Q Consensus 578 ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~ 656 (911)
+++|.+++..+.. +++|++|++++|++++..|..+..+++|++|++++|++++..|..+ ..+++|++|++++|++++
T Consensus 106 l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 6666666554443 4667888888888887777778888888889999888887777766 478899999999999885
Q ss_pred cCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCC
Q 043567 657 QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGP 736 (911)
Q Consensus 657 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 736 (911)
. |. ...+++|+.|+|++|++++ +|..+..
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~------------------------------------------------ 212 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS------------------------------------------------ 212 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGG------------------------------------------------
T ss_pred c-cc-ccccccCCEEECCCCcCCc-chhhhcc------------------------------------------------
Confidence 5 32 3358899999999999874 3333332
Q ss_pred cccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCC-ccccccccccCCCCEE
Q 043567 737 FTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS-ESIPESFSNLKMIESL 815 (911)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L 815 (911)
+++|+.||+++|+++ .+|..+..+++|+.|++++|.++ +.+|..++.+++|+.|
T Consensus 213 ------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 213 ------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp ------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred ------------------------cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 246788999999999 68888999999999999999999 8899999999999999
Q ss_pred ecc-CCcCcccCCCCCC
Q 043567 816 DLS-HNRLSGQIPPKLT 831 (911)
Q Consensus 816 dLs-~N~l~g~ip~~l~ 831 (911)
+++ .+.++|..|....
T Consensus 268 ~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 268 AKQTVKKLTGQNEEECT 284 (317)
T ss_dssp HHHHHHHHHSSSSCCCS
T ss_pred ECCCchhccCCchhccC
Confidence 999 5678887775443
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=253.71 Aligned_cols=199 Identities=20% Similarity=0.151 Sum_probs=140.3
Q ss_pred ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEcc
Q 043567 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS 555 (911)
Q Consensus 476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 555 (911)
....++.++..++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567788887776 4555544 689999999999998888999999999999999999998888899999999999999
Q ss_pred CcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccc-cccCCCCCCEEeCCCCccccc
Q 043567 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNGFSGV 633 (911)
Q Consensus 556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~l~~~ 633 (911)
+|++++..+..+..+++|++|++++|.+....+..+ .+++|++|++++|+..+.++. .+.++++|++|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999996666678888888888888888876666555 566666666666443333333 4555555666666665555 3
Q ss_pred CchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567 634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 634 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
+| .+..+++|++|+|++|++++..|..+..+++|+.|+|++|+++
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 33 2445555555555555555444555555555544444444444
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.6e-25 Score=254.41 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=143.1
Q ss_pred ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEcc
Q 043567 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS 555 (911)
Q Consensus 476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 555 (911)
....++.++..++. +|..+. +++++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35677888877764 555443 689999999999999889999999999999999999998888999999999999999
Q ss_pred CcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccc-cccCCCCCCEEeCCCCccccc
Q 043567 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNGFSGV 633 (911)
Q Consensus 556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~l~~~ 633 (911)
+|++++..+..+..+++|++|++++|.+....+..+ .+++|++|++++|+..+.++. .+.++++|++|++++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 999997666678888888888888888876666555 666666666666444334433 35555666666666666653
Q ss_pred CchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567 634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG 680 (911)
Q Consensus 634 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 680 (911)
+| .+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 23 34555555555555555555555555555555555555554443
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.2e-28 Score=289.38 Aligned_cols=396 Identities=15% Similarity=0.054 Sum_probs=183.6
Q ss_pred cCCcccEEEccCCccccccCCCCC-CCCCccEEEccCC-cCCcCCChhHHHhccCCcEEEcccCccccccchhhh----c
Q 043567 375 NNTKLEVLLLTNNSFTGNLQLPDD-KHDFLHHLDISSN-NFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIA----E 448 (911)
Q Consensus 375 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~ 448 (911)
.+++|++|++++|.+++....... .+++|++|++++| .++......+...+++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 344455555555444332111111 2445555555555 222211222222356666666666665544433333 3
Q ss_pred CCCCcEEeccCcc--cCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCc-------cccccccccc
Q 043567 449 MKELRFLDLSKNN--FSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENN-------KFSGKIEEGL 519 (911)
Q Consensus 449 l~~L~~L~Ls~n~--l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~p~~l 519 (911)
+++|++|++++|. ++......+...+++|+.|++++|...+.++..+..+++|++|+++.+ .+.+ ++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence 4466666666654 221111222334556666666655222224444455556666664333 2332 23345
Q ss_pred cCCCCCcEE-ECcCCcCcccCCcCccCcCCCcEEEccCcccccccc-hhhccCCCCcEEEccCccccc-ccCccc-cccc
Q 043567 520 LKSKKLVEL-RMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP-VQLLNHRRLQLFSVSENYLSG-FMTTSF-NISS 595 (911)
Q Consensus 520 ~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~ls~n~l~~-~~~~~~-~~~~ 595 (911)
..+++|+.+ .+.+... +.++..+..+++|+.|++++|.+++... ..+..+++|+.|++++| +.. .++... .+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 556666666 2322221 2334444455666666666666543322 22345566666666655 221 111111 3555
Q ss_pred ccEEEccc---------Cccccccccccc-CCCCCCEEeCCCCcccccCchhhh-cCCCccEEEcc--C----Ccccc--
Q 043567 596 VEHLYLQK---------NSLSGPIPIALF-RSSNLLTLDLRDNGFSGVIPHQIN-ECSNLRFLLLR--G----NNLEG-- 656 (911)
Q Consensus 596 L~~L~Ls~---------n~l~~~~p~~l~-~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~--~----N~l~~-- 656 (911)
|++|++++ +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|++|+++ + |.+++
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 66665522 333332222222 255566665555555544444443 35556666665 2 33331
Q ss_pred ---cCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCC
Q 043567 657 ---QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE 733 (911)
Q Consensus 657 ---~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~ 733 (911)
.++..+..+++|+.|+|++ .+++..+..+.
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~---------------------------------------------- 452 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG---------------------------------------------- 452 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH----------------------------------------------
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH----------------------------------------------
Confidence 1112244455556655543 22211111100
Q ss_pred CCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccc-cCCCCCCEEECCCCcCCccccc-cccccCC
Q 043567 734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPE-SFSNLKM 811 (911)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i-~~l~~L~~L~Ls~N~l~g~ip~-~l~~l~~ 811 (911)
..+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++
T Consensus 453 -------------------------~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 453 -------------------------TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp -------------------------HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred -------------------------HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 012356667777777665544444 5566777777777776554443 3334667
Q ss_pred CCEEeccCCcCcccCCCCC-CCCCCCCeEeccCCc
Q 043567 812 IESLDLSHNRLSGQIPPKL-TELNFLSNFNVSYNN 845 (911)
Q Consensus 812 L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~ls~N~ 845 (911)
|+.|++++|+++..-...+ ..++.|+...+..+.
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 7777777776653322223 334445444444443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.3e-25 Score=258.08 Aligned_cols=242 Identities=24% Similarity=0.269 Sum_probs=146.1
Q ss_pred CCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEc
Q 043567 499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSV 578 (911)
Q Consensus 499 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l 578 (911)
++|++|++++|+++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 45555555555555 2333 3455555555555555 2333 34555555555555553 333 3455556666
Q ss_pred cCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccC
Q 043567 579 SENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI 658 (911)
Q Consensus 579 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i 658 (911)
++|++++..+. +++|++|++++|++++ +|. ...+|+.|++++|++++ +| ..+++|+.|++++|.+++ +
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence 66655543221 3566666666666653 333 23466777777777764 45 345667777777777763 4
Q ss_pred ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcc
Q 043567 659 PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFT 738 (911)
Q Consensus 659 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 738 (911)
|.. +++|+.|++++|.++ .+|..
T Consensus 197 ~~~---~~~L~~L~L~~N~l~-~l~~~----------------------------------------------------- 219 (622)
T 3g06_A 197 PTL---PSELYKLWAYNNRLT-SLPAL----------------------------------------------------- 219 (622)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCCC-----------------------------------------------------
T ss_pred CCc---cchhhEEECcCCccc-ccCCC-----------------------------------------------------
Confidence 432 356777777777665 22211
Q ss_pred cccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEecc
Q 043567 739 FDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS 818 (911)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs 818 (911)
+++|+.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|+
T Consensus 220 ----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 220 ----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp ----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred ----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 1245667777777774 55 44567777888888777 4555 45677778888
Q ss_pred CCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567 819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852 (911)
Q Consensus 819 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 852 (911)
+|+|+ .||..+.+++.|++|+|++|+++|.+|.
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 88777 6777777777788888888888777765
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1e-26 Score=267.47 Aligned_cols=234 Identities=20% Similarity=0.207 Sum_probs=162.2
Q ss_pred CCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEccc
Q 043567 524 KLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK 603 (911)
Q Consensus 524 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~ 603 (911)
+|++|++++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 55555555555555545555555555556665555554444 5555666666666665554433 25677777777
Q ss_pred CcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhh-cCCCCCeEEcCCCcCCCCC
Q 043567 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC-QLTGLGMMDLSHNKFNGSI 682 (911)
Q Consensus 604 n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~g~i 682 (911)
|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.+++..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 777655443 246788888888888877777788888888888888888887777776 6888888888888876431
Q ss_pred CcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCc
Q 043567 683 PSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD 762 (911)
Q Consensus 683 p~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 762 (911)
+. ..++
T Consensus 186 ~~--------------------------------------------------------------------------~~l~ 191 (487)
T 3oja_A 186 GQ--------------------------------------------------------------------------VVFA 191 (487)
T ss_dssp CC--------------------------------------------------------------------------CCCT
T ss_pred cc--------------------------------------------------------------------------ccCC
Confidence 10 0134
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCc-ccCCCCCCCCCCCCeEec
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS-GQIPPKLTELNFLSNFNV 841 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~l 841 (911)
.|+.|||++|++++ +|..++.+++|+.|+|++|++++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.+++
T Consensus 192 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 67778888888885 44457888888888888888885 6777888888888888888887 677777777777777777
Q ss_pred c
Q 043567 842 S 842 (911)
Q Consensus 842 s 842 (911)
+
T Consensus 270 ~ 270 (487)
T 3oja_A 270 Q 270 (487)
T ss_dssp H
T ss_pred c
Confidence 5
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-25 Score=262.54 Aligned_cols=268 Identities=26% Similarity=0.336 Sum_probs=179.3
Q ss_pred CCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEc
Q 043567 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL 506 (911)
Q Consensus 427 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 506 (911)
+++.|++++|.++ .+|..+. ++|++|++++|+++ .+|. . +++|++|+|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~------------------------l~~L~~L~L 88 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----L------------------------PPELRTLEV 88 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----C------------------------CTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----c------------------------CCCCCEEEc
Confidence 4666666666666 4454443 56666666666665 3443 2 345555555
Q ss_pred cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccc
Q 043567 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGF 586 (911)
Q Consensus 507 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~ 586 (911)
++|+++ .+|. .+++|++|++++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++.
T Consensus 89 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 89 SGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred CCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence 555554 2333 34555555555555553 232 34555666666666553 4432 25666666666666653
Q ss_pred cCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCC
Q 043567 587 MTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLT 666 (911)
Q Consensus 587 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~ 666 (911)
.. .+++|+.|++++|++++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|.. ++
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~ 221 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS 221 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CC
Confidence 22 24567777777777774 55 345788888888888884 4543 468888999999888 45543 47
Q ss_pred CCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeee
Q 043567 667 GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVE 746 (911)
Q Consensus 667 ~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 746 (911)
+|+.|+|++|++++ +|..
T Consensus 222 ~L~~L~Ls~N~L~~-lp~~------------------------------------------------------------- 239 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LPVL------------------------------------------------------------- 239 (622)
T ss_dssp TCCEEECCSSCCSC-CCCC-------------------------------------------------------------
T ss_pred CCCEEEccCCccCc-CCCC-------------------------------------------------------------
Confidence 88999999998874 4411
Q ss_pred eeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccC
Q 043567 747 FVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826 (911)
Q Consensus 747 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i 826 (911)
+++|+.|++++|+|+ .+|. .+++|+.|+|++|+|+ .+|..++++++|+.|+|++|++++.+
T Consensus 240 --------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 240 --------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp --------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred --------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 235778999999998 6776 5788999999999998 78889999999999999999999998
Q ss_pred CCCCCCCC
Q 043567 827 PPKLTELN 834 (911)
Q Consensus 827 p~~l~~l~ 834 (911)
|..+..++
T Consensus 301 ~~~l~~L~ 308 (622)
T 3g06_A 301 LQALREIT 308 (622)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 88776655
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.2e-26 Score=260.42 Aligned_cols=237 Identities=20% Similarity=0.189 Sum_probs=194.2
Q ss_pred CCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEE
Q 043567 497 NLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLF 576 (911)
Q Consensus 497 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 576 (911)
.+++|++|+|++|.+++..|..+..+++|++|+|++|.+++..| ++.+++|++|++++|.+++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 44577777777777777667777777888888888888776555 7778888888888887774322 3788888
Q ss_pred EccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhh-cCCCccEEEccCCccc
Q 043567 577 SVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQIN-ECSNLRFLLLRGNNLE 655 (911)
Q Consensus 577 ~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~ 655 (911)
++++|.+++..+.. +++|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|++|+|++|.++
T Consensus 105 ~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 88888888776653 57899999999999988888999999999999999999998888886 7999999999999998
Q ss_pred ccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCC
Q 043567 656 GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERG 735 (911)
Q Consensus 656 ~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 735 (911)
+..+ ...+++|+.|+|++|.+++. |+.+..
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~----------------------------------------------- 212 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQS----------------------------------------------- 212 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEE-CGGGGG-----------------------------------------------
T ss_pred cccc--cccCCCCCEEECCCCCCCCC-CHhHcC-----------------------------------------------
Confidence 7633 34689999999999999864 333432
Q ss_pred CcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCC-ccccccccccCCCCE
Q 043567 736 PFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS-ESIPESFSNLKMIES 814 (911)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~ 814 (911)
++.|+.||+++|++++ +|..++.+++|+.|++++|.++ +.+|..++.++.|+.
T Consensus 213 -------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 213 -------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (487)
T ss_dssp -------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred -------------------------CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence 2467889999999995 8888999999999999999998 789999999999999
Q ss_pred Eecc
Q 043567 815 LDLS 818 (911)
Q Consensus 815 LdLs 818 (911)
++++
T Consensus 267 l~~~ 270 (487)
T 3oja_A 267 VAKQ 270 (487)
T ss_dssp HHHH
T ss_pred Eecc
Confidence 9987
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8e-24 Score=225.21 Aligned_cols=228 Identities=21% Similarity=0.212 Sum_probs=132.3
Q ss_pred EEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcc
Q 043567 527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSL 606 (911)
Q Consensus 527 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l 606 (911)
.++..+..+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------ 69 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED------------------ 69 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT------------------
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH------------------
Confidence 3455555554 4554443 356666666666665545456666666666665555554444
Q ss_pred cccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC-CCCcc
Q 043567 607 SGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG-SIPSC 685 (911)
Q Consensus 607 ~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~ 685 (911)
..+..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++ .+|..
T Consensus 70 -----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 70 -----GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp -----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred -----HHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 344445555555555555554444555555555555555555554444445555555555555555543 23433
Q ss_pred cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCcccc
Q 043567 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV 765 (911)
Q Consensus 686 ~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 765 (911)
+..+ ++|+
T Consensus 145 ~~~l------------------------------------------------------------------------~~L~ 152 (276)
T 2z62_A 145 FSNL------------------------------------------------------------------------TNLE 152 (276)
T ss_dssp GGGC------------------------------------------------------------------------TTCC
T ss_pred hccC------------------------------------------------------------------------CCCC
Confidence 3221 2445
Q ss_pred EEEcccCcccccCCccccCCCCCC----EEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567 766 GLDLSCNKLTGEIPSEIGELQEIP----VLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV 841 (911)
Q Consensus 766 ~LdLs~N~l~g~ip~~i~~l~~L~----~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 841 (911)
.|++++|++++..+..+..+++|+ .|++++|++++..|..+. ..+|+.||+++|++++..+..+..++.|++|++
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 556666666555555555555555 677777777755554444 346888888888888666666777888888888
Q ss_pred cCCcCeecCCCC
Q 043567 842 SYNNLSGLIPDK 853 (911)
Q Consensus 842 s~N~l~g~iP~~ 853 (911)
++|++++..|.-
T Consensus 232 ~~N~~~c~c~~l 243 (276)
T 2z62_A 232 HTNPWDCSCPRI 243 (276)
T ss_dssp CSSCBCCCTTTT
T ss_pred cCCcccccCCch
Confidence 888888777654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.3e-23 Score=221.71 Aligned_cols=229 Identities=20% Similarity=0.163 Sum_probs=165.4
Q ss_pred EEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcc
Q 043567 503 YLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY 582 (911)
Q Consensus 503 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~ 582 (911)
..+..+..++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4555566665 566655 3689999999999998877799999999999999999997777788888888887777777
Q ss_pred cccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc-cCChh
Q 043567 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG-QIPNQ 661 (911)
Q Consensus 583 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~ip~~ 661 (911)
+++..+ ..+.++++|++|++++|++.+..+..++.+++|++|++++|++++ .+|..
T Consensus 88 l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 88 IQSLAL-----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CCEECT-----------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred cCccCh-----------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 665544 344555566666666666665555456666677777777777665 35677
Q ss_pred hhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccc
Q 043567 662 ICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDY 741 (911)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 741 (911)
+..+++|+.|++++|++++..+..+..+..
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------------------------------------------------- 174 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-------------------------------------------------- 174 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHT--------------------------------------------------
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhh--------------------------------------------------
Confidence 777777777777777776554444443320
Q ss_pred ceeeeeeeccceeeccCCcCcccc-EEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCC
Q 043567 742 LVEVEFVTKNRYEVYNGSNLDYMV-GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHN 820 (911)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 820 (911)
++.+. .|++++|++++..+..+. ..+|+.|+|++|++++..+..++++++|+.|++++|
T Consensus 175 -------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 175 -------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp -------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred -------------------ccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 11122 588899998855554444 458999999999999777777889999999999999
Q ss_pred cCcccCC
Q 043567 821 RLSGQIP 827 (911)
Q Consensus 821 ~l~g~ip 827 (911)
++++..|
T Consensus 235 ~~~c~c~ 241 (276)
T 2z62_A 235 PWDCSCP 241 (276)
T ss_dssp CBCCCTT
T ss_pred cccccCC
Confidence 9987554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3e-23 Score=219.83 Aligned_cols=215 Identities=23% Similarity=0.287 Sum_probs=167.5
Q ss_pred CCCccccceeecCCCCcEEEEecCCCCcccccccccccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCC
Q 043567 76 SDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGS 155 (911)
Q Consensus 76 ~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 155 (911)
.++|.|.|+.|.- .+.++.+++++..+ ..+.. .+ .+++++|++++|.+++..+ ..+.+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l--------------~~ip~-~~--~~~l~~L~l~~n~l~~~~~----~~~~~ 59 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKL--------------TAIPS-NI--PADTKKLDLQSNKLSSLPS----KAFHR 59 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCC--------------SSCCS-CC--CTTCSEEECCSSCCSCCCT----TSSSS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCC--------------CccCC-CC--CCCCCEEECcCCCCCeeCH----HHhcC
Confidence 4799999999864 23455678877665 11111 11 2578999999999988765 57888
Q ss_pred CCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCE
Q 043567 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235 (911)
Q Consensus 156 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 235 (911)
+++|++|++++|.++...+..|.++++|++|++++|++.+ ++...|.++++|++|++++|+++ .++...|.++++|++
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCE
Confidence 9999999999999987777777889999999999999874 45467888999999999999988 455556888999999
Q ss_pred EeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN 315 (911)
Q Consensus 236 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~ 315 (911)
|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++++|.
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 999999988876667888899999999999988777777888899999999999887 4554556666666666665543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.8e-23 Score=218.44 Aligned_cols=202 Identities=22% Similarity=0.256 Sum_probs=154.8
Q ss_pred CCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEc
Q 043567 570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL 649 (911)
Q Consensus 570 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 649 (911)
+++|+.|++++|.+... +....+++|++|++++|++++ + ..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 34444444444443321 122245566666666666654 2 36777888888888888888777777888888888888
Q ss_pred cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567 650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL 729 (911)
Q Consensus 650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l 729 (911)
++|++++..|..+..+++|++|++++|++++..|..+..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------------------- 155 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------------------------------------- 155 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-----------------------------------------
Confidence 888888777777888888999999988888655543332
Q ss_pred CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc
Q 043567 730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL 809 (911)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l 809 (911)
+++|+.|++++|++++..|..++.+++|++|++++|++++..|..++.+
T Consensus 156 -------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (272)
T 3rfs_A 156 -------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204 (272)
T ss_dssp -------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence 2467889999999997777778999999999999999999888889999
Q ss_pred CCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567 810 KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK 853 (911)
Q Consensus 810 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 853 (911)
++|+.|++++|.+++..| .|++++++.|+++|.||..
T Consensus 205 ~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 205 TSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred cCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 999999999999987654 5888999999999999975
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.9e-23 Score=220.09 Aligned_cols=198 Identities=20% Similarity=0.208 Sum_probs=86.5
Q ss_pred CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM 530 (911)
Q Consensus 451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 530 (911)
++..+++..+.+.+.... ..+++|+.|++++|.+.. .+.+..+++|++|++++|++++. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCccccccccc---ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 344445555555433322 234455555555555432 12344445555555555554431 23444445555555
Q ss_pred cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccc
Q 043567 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPI 610 (911)
Q Consensus 531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 610 (911)
++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------- 151 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG--------------------- 151 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH---------------------
Confidence 55554444444444444444444444444433333344444444444444444433333
Q ss_pred cccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcC
Q 043567 611 PIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF 678 (911)
Q Consensus 611 p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 678 (911)
.+..+++|++|++++|++++..+..++.+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus 152 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 152 --VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp --TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 333344444444444444433333334444444444444444433333334444444444444433
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.1e-24 Score=236.76 Aligned_cols=176 Identities=22% Similarity=0.198 Sum_probs=85.2
Q ss_pred EEccCccccccccccccCCCCCcEEECcCCcCcccCC----cCccCcC-CCcEEEccCcccccccchhhccC-----CCC
Q 043567 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP----HWMGNLS-YLEVLLMSKNFFEGNIPVQLLNH-----RRL 573 (911)
Q Consensus 504 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~-----~~L 573 (911)
++++.|.+++.+|..+...++|++|++++|++++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555544444445555555555554433 3444454 55555555555554444444443 555
Q ss_pred cEEEccCcccccccCccc-----cc-ccccEEEcccCccccccccccc----C-CCCCCEEeCCCCcccccC----chhh
Q 043567 574 QLFSVSENYLSGFMTTSF-----NI-SSVEHLYLQKNSLSGPIPIALF----R-SSNLLTLDLRDNGFSGVI----PHQI 638 (911)
Q Consensus 574 ~~L~ls~n~l~~~~~~~~-----~~-~~L~~L~Ls~n~l~~~~p~~l~----~-~~~L~~L~Ls~N~l~~~~----p~~l 638 (911)
++|++++|.+++..+..+ .+ ++|++|++++|++++..+..+. . .++|++|+|++|++++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 555555555554443322 11 4555555555555444333322 1 235555555555555322 2223
Q ss_pred hcCC-CccEEEccCCcccccCChhhhc----C-CCCCeEEcCCCcCC
Q 043567 639 NECS-NLRFLLLRGNNLEGQIPNQICQ----L-TGLGMMDLSHNKFN 679 (911)
Q Consensus 639 ~~l~-~L~~L~L~~N~l~~~ip~~l~~----l-~~L~~L~Ls~N~l~ 679 (911)
..++ +|++|+|++|++++..+..+.. . ++|+.|||++|.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 3333 5555555555555444433332 2 35555555555544
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=4.3e-22 Score=210.90 Aligned_cols=205 Identities=22% Similarity=0.250 Sum_probs=159.5
Q ss_pred CcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCC
Q 043567 573 LQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN 652 (911)
Q Consensus 573 L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 652 (911)
.+.++++++.++.. |..+ .+++++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~i-p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI-PSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCcc-CCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 44455555555432 2211 245677777777777655667788888888888888888655556678888888888888
Q ss_pred cccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCC
Q 043567 653 NLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE 732 (911)
Q Consensus 653 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~ 732 (911)
++++..+..+..+++|++|++++|++++..|..+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------- 131 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------- 131 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence 888766677788888999999888887655544432
Q ss_pred CCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCC
Q 043567 733 ERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMI 812 (911)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 812 (911)
+++|+.|++++|++++..+..++.+++|+.|+|++|++++..|..|.++++|
T Consensus 132 ----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 132 ----------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp ----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 3467889999999986666678999999999999999998888889999999
Q ss_pred CEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCC
Q 043567 813 ESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 813 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 851 (911)
+.|||++|++++..+..+..++.|++|++++|++....+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999999998777778999999999999999987654
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=9.4e-24 Score=233.91 Aligned_cols=257 Identities=17% Similarity=0.150 Sum_probs=207.6
Q ss_pred EEECcCCcCcccCCcCccCcCCCcEEEccCcccccccc----hhhccCC-CCcEEEccCcccccccCccc-cc-----cc
Q 043567 527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP----VQLLNHR-RLQLFSVSENYLSGFMTTSF-NI-----SS 595 (911)
Q Consensus 527 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~~~-~L~~L~ls~n~l~~~~~~~~-~~-----~~ 595 (911)
.++++.|.++|.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+ .+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999999999888888889999999999997766 7778888 89999999999998877665 43 89
Q ss_pred ccEEEcccCcccccccccccC----C-CCCCEEeCCCCcccccCchhhhc-----CCCccEEEccCCcccccC----Chh
Q 043567 596 VEHLYLQKNSLSGPIPIALFR----S-SNLLTLDLRDNGFSGVIPHQINE-----CSNLRFLLLRGNNLEGQI----PNQ 661 (911)
Q Consensus 596 L~~L~Ls~n~l~~~~p~~l~~----~-~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~i----p~~ 661 (911)
|++|++++|++++..+..+.. + ++|++|++++|++++..+..+.. .++|++|+|++|++++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999877765444 4 89999999999999877766543 369999999999998644 444
Q ss_pred hhcCC-CCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccc
Q 043567 662 ICQLT-GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFD 740 (911)
Q Consensus 662 l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 740 (911)
+..++ +|+.|+|++|++++..+..+...-
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-------------------------------------------------- 191 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFL-------------------------------------------------- 191 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------------------------
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------------------------
Confidence 55665 999999999999876665443320
Q ss_pred cceeeeeeeccceeeccCCcC-ccccEEEcccCccccc----CCccccC-CCCCCEEECCCCcCCcccc----ccccccC
Q 043567 741 YLVEVEFVTKNRYEVYNGSNL-DYMVGLDLSCNKLTGE----IPSEIGE-LQEIPVLNMSHNFLSESIP----ESFSNLK 810 (911)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~----ip~~i~~-l~~L~~L~Ls~N~l~g~ip----~~l~~l~ 810 (911)
... +.|+.|||++|++++. ++..+.. .++|++|||++|++++..+ ..+..++
T Consensus 192 ------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 192 ------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp ------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 011 3688999999999863 6666666 4599999999999998655 4456789
Q ss_pred CCCEEeccCCcCccc-------CCCCCCCCCCCCeEeccCCcCeecCC
Q 043567 811 MIESLDLSHNRLSGQ-------IPPKLTELNFLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 811 ~L~~LdLs~N~l~g~-------ip~~l~~l~~L~~L~ls~N~l~g~iP 851 (911)
+|+.|+|++|++.+. ++..+..++.|++||+++|++.+..|
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 999999999995433 44578889999999999999987643
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.3e-22 Score=212.09 Aligned_cols=201 Identities=19% Similarity=0.168 Sum_probs=130.2
Q ss_pred CCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEc
Q 043567 570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL 649 (911)
Q Consensus 570 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 649 (911)
+++++.++++++.++..++.. .+.++.|++++|.+++..|..+..+++|+.|++++|.+++. |.. +.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEEC
Confidence 344444444444444322221 14555666666666655566666667777777777776643 222 56677777777
Q ss_pred cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567 650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL 729 (911)
Q Consensus 650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l 729 (911)
++|+++ .+|..+..+++|++|++++|++++..|..|..
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~----------------------------------------- 122 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG----------------------------------------- 122 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-----------------------------------------
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-----------------------------------------
Confidence 777776 56666677777777777777776544443332
Q ss_pred CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc
Q 043567 730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL 809 (911)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l 809 (911)
++.|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+
T Consensus 123 -------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 123 -------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp -------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred -------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 2356667777777776666666777778888888888776555566777
Q ss_pred CCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567 810 KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 810 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
++|+.|+|++|+++ .+|..+..+..|+++++++|++..
T Consensus 172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 78888888888877 677777777778888888887764
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.9e-24 Score=240.47 Aligned_cols=248 Identities=19% Similarity=0.218 Sum_probs=167.3
Q ss_pred ccccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCc---ccccccchhhccCCCCcEEEccCccccccc
Q 043567 515 IEEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKN---FFEGNIPVQLLNHRRLQLFSVSENYLSGFM 587 (911)
Q Consensus 515 ~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n---~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~ 587 (911)
++..+..+++|++|++++|++++. ++..+..+++|++|++++| ++++.+|..+..+.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~---------------- 87 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL---------------- 87 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH----------------
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH----------------
Confidence 444555666677777777766644 2233556666666666664 33444444431000
Q ss_pred Cccc-ccccccEEEcccCcccc----cccccccCCCCCCEEeCCCCcccccCchhh----hcC---------CCccEEEc
Q 043567 588 TTSF-NISSVEHLYLQKNSLSG----PIPIALFRSSNLLTLDLRDNGFSGVIPHQI----NEC---------SNLRFLLL 649 (911)
Q Consensus 588 ~~~~-~~~~L~~L~Ls~n~l~~----~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~L 649 (911)
..+ .+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++
T Consensus 88 -~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 88 -QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp -HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred -HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 001 34556666666666655 356677777788888888887764433333 333 78888888
Q ss_pred cCCccc-ccCC---hhhhcCCCCCeEEcCCCcCCC-----CCCcccccccccccCCccccccccchhhhhcccccccccc
Q 043567 650 RGNNLE-GQIP---NQICQLTGLGMMDLSHNKFNG-----SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYY 720 (911)
Q Consensus 650 ~~N~l~-~~ip---~~l~~l~~L~~L~Ls~N~l~g-----~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 720 (911)
++|+++ +.+| ..+..+++|+.|+|++|+++. .+|..+
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l---------------------------------- 212 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL---------------------------------- 212 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG----------------------------------
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh----------------------------------
Confidence 888886 4455 466778888888888887751 011011
Q ss_pred ccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc----ccCCccccCCCCCCEEECCCC
Q 043567 721 SSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT----GEIPSEIGELQEIPVLNMSHN 796 (911)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~i~~l~~L~~L~Ls~N 796 (911)
..++.|+.|+|++|+++ +.+|..+..+++|++|+|++|
T Consensus 213 --------------------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 213 --------------------------------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp --------------------------------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred --------------------------------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 12346788888888886 678888888999999999999
Q ss_pred cCCcc----cccccc--ccCCCCEEeccCCcCcc----cCCCCC-CCCCCCCeEeccCCcCeecCC
Q 043567 797 FLSES----IPESFS--NLKMIESLDLSHNRLSG----QIPPKL-TELNFLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 797 ~l~g~----ip~~l~--~l~~L~~LdLs~N~l~g----~ip~~l-~~l~~L~~L~ls~N~l~g~iP 851 (911)
++++. +|..+. .+++|+.|+|++|++++ .+|..+ .+++.|++|++++|++++..|
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99876 677773 48899999999999998 588777 668899999999999987764
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.6e-24 Score=238.14 Aligned_cols=187 Identities=18% Similarity=0.253 Sum_probs=113.1
Q ss_pred cCCCCCCCCCCCEEEccCcccccccc----ccccCCCCCcEEECcCC---cCcccCCcCc-------cCcCCCcEEEccC
Q 043567 491 IFPGYMNLTQLQYLYLENNKFSGKIE----EGLLKSKKLVELRMSSN---MLSGHIPHWM-------GNLSYLEVLLMSK 556 (911)
Q Consensus 491 ~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~L~~ 556 (911)
++..+..+++|++|+|++|++++..+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44556678999999999999987644 44778999999999996 4555666555 6788999999999
Q ss_pred ccccc----ccchhhccCCCCcEEEccCcccccccCccc-----cc---------ccccEEEcccCccc-cccc---ccc
Q 043567 557 NFFEG----NIPVQLLNHRRLQLFSVSENYLSGFMTTSF-----NI---------SSVEHLYLQKNSLS-GPIP---IAL 614 (911)
Q Consensus 557 n~l~~----~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-----~~---------~~L~~L~Ls~n~l~-~~~p---~~l 614 (911)
|.+++ .+|..+..+++|+.|++++|.++...+..+ .+ ++|++|++++|+++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 98887 477778888888888888888765433322 11 44555555555544 2222 233
Q ss_pred cCCCCCCEEeCCCCccc--c---cCchhhhcCCCccEEEccCCccc----ccCChhhhcCCCCCeEEcCCCc
Q 043567 615 FRSSNLLTLDLRDNGFS--G---VIPHQINECSNLRFLLLRGNNLE----GQIPNQICQLTGLGMMDLSHNK 677 (911)
Q Consensus 615 ~~~~~L~~L~Ls~N~l~--~---~~p~~l~~l~~L~~L~L~~N~l~----~~ip~~l~~l~~L~~L~Ls~N~ 677 (911)
..+++|++|++++|+++ | ..|..+..+++|++|+|++|.++ +.+|..+..+++|+.|+|++|+
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 34444444444444444 1 12223444444444444444443 2333334444444444444443
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=5.4e-22 Score=207.66 Aligned_cols=213 Identities=20% Similarity=0.235 Sum_probs=166.9
Q ss_pred ccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEc
Q 043567 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDL 673 (911)
Q Consensus 594 ~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~L 673 (911)
...++++++++.++ .+|..+. ++++.|++++|++++..|..+.++++|++|+|++|++++..|..+..+++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34567777777776 5666554 58899999999999888888999999999999999999888888899999999999
Q ss_pred CCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccce
Q 043567 674 SHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRY 753 (911)
Q Consensus 674 s~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 753 (911)
++|++++..|..+..
T Consensus 91 ~~n~l~~~~~~~~~~----------------------------------------------------------------- 105 (251)
T 3m19_A 91 ANNQLASLPLGVFDH----------------------------------------------------------------- 105 (251)
T ss_dssp TTSCCCCCCTTTTTT-----------------------------------------------------------------
T ss_pred CCCcccccChhHhcc-----------------------------------------------------------------
Confidence 999988655544432
Q ss_pred eeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCC
Q 043567 754 EVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTEL 833 (911)
Q Consensus 754 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l 833 (911)
+++|+.|+|++|++++..+..++.+++|++|+|++|++++..|..++.+++|+.|||++|++++..|..+..+
T Consensus 106 -------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 106 -------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 3467889999999997777778999999999999999998888789999999999999999998888899999
Q ss_pred CCCCeEeccCCcCeecCCCCCCCCcc------CccccCCCCCCCCCccCCCCCCC
Q 043567 834 NFLSNFNVSYNNLSGLIPDKGQFATF------DESSYRGNLHLCGPTINKSCNGV 882 (911)
Q Consensus 834 ~~L~~L~ls~N~l~g~iP~~~~~~~~------~~~~~~gn~~lcg~~l~~~c~~~ 882 (911)
+.|++|++++|++++..+....+..+ ......|+. +|+.+-...|...
T Consensus 179 ~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 179 GKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp TTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 99999999999999875443222211 111123443 7777777778754
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.8e-21 Score=208.01 Aligned_cols=202 Identities=25% Similarity=0.260 Sum_probs=173.1
Q ss_pred ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM 671 (911)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L 671 (911)
++++++++++++|.++ .+|..+. ++++.|++++|++++..|..+..+++|++|++++|.+++..+ . ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEE
Confidence 6788999999999998 6777664 689999999999998888999999999999999999996444 3 789999999
Q ss_pred EcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeecc
Q 043567 672 DLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN 751 (911)
Q Consensus 672 ~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 751 (911)
++++|+++ .+|..+..
T Consensus 83 ~Ls~N~l~-~l~~~~~~--------------------------------------------------------------- 98 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQT--------------------------------------------------------------- 98 (290)
T ss_dssp ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence 99999997 45543322
Q ss_pred ceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCC
Q 043567 752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT 831 (911)
Q Consensus 752 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~ 831 (911)
++.|+.|++++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..+.
T Consensus 99 ---------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 99 ---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp ---------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred ---------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 34788899999999987788999999999999999999988888899999999999999999976666789
Q ss_pred CCCCCCeEeccCCcCeecCCCC-CCCCccCccccCCCCCCCC
Q 043567 832 ELNFLSNFNVSYNNLSGLIPDK-GQFATFDESSYRGNLHLCG 872 (911)
Q Consensus 832 ~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg 872 (911)
.++.|++|++++|+++ .||.+ .....+....+.|||.-|.
T Consensus 170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9999999999999999 56654 3344455566789999884
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.1e-22 Score=223.05 Aligned_cols=250 Identities=18% Similarity=0.247 Sum_probs=156.2
Q ss_pred CCEEEccCccccccccccccCC--CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccc-cchhhccCCCCcEEE
Q 043567 501 LQYLYLENNKFSGKIEEGLLKS--KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGN-IPVQLLNHRRLQLFS 577 (911)
Q Consensus 501 L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~ 577 (911)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566777776665 3334444 6777777777777765554 44567777777777776654 555555555555555
Q ss_pred ccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCC-cccc-cCchhhhcCCCccEEEccCC-cc
Q 043567 578 VSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDN-GFSG-VIPHQINECSNLRFLLLRGN-NL 654 (911)
Q Consensus 578 ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~N-~l 654 (911)
+++|. +++..|..+..+++|++|++++| .+++ .+|..+..+++|++|++++| .+
T Consensus 125 L~~~~-----------------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGLR-----------------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTCB-----------------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCcc-----------------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 55544 44445555566666666666666 4554 24555666677777777777 66
Q ss_pred ccc-CChhhhcCC-CCCeEEcCCCc--CC-CCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567 655 EGQ-IPNQICQLT-GLGMMDLSHNK--FN-GSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL 729 (911)
Q Consensus 655 ~~~-ip~~l~~l~-~L~~L~Ls~N~--l~-g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l 729 (911)
++. ++..+..++ +|+.|++++|. ++ +.+|..+.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~------------------------------------------ 219 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR------------------------------------------ 219 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH------------------------------------------
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh------------------------------------------
Confidence 643 556666677 77777777773 33 11221111
Q ss_pred CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCc-ccccCCccccCCCCCCEEECCCCc-CCcccccccc
Q 043567 730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNK-LTGEIPSEIGELQEIPVLNMSHNF-LSESIPESFS 807 (911)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~i~~l~~L~~L~Ls~N~-l~g~ip~~l~ 807 (911)
.+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......++
T Consensus 220 ------------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 220 ------------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp ------------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred ------------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 13456777777777 666777778888888888888884 3322223577
Q ss_pred ccCCCCEEeccCCcCcccCCCCCCCCC-CCCeEeccCCcCeecCCCC
Q 043567 808 NLKMIESLDLSHNRLSGQIPPKLTELN-FLSNFNVSYNNLSGLIPDK 853 (911)
Q Consensus 808 ~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~~ 853 (911)
++++|+.|++++| ++. ..+..+. .+..|++++|+++|..|..
T Consensus 270 ~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 7888888888888 321 1333332 3667778888888887753
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=217.73 Aligned_cols=203 Identities=19% Similarity=0.205 Sum_probs=131.0
Q ss_pred CCcEEEccCcccccccCcc---cccccccEEEcccCccccccc----ccccCCCCCCEEeCCCCcccccCchhhhcCCCc
Q 043567 572 RLQLFSVSENYLSGFMTTS---FNISSVEHLYLQKNSLSGPIP----IALFRSSNLLTLDLRDNGFSGVIPHQINECSNL 644 (911)
Q Consensus 572 ~L~~L~ls~n~l~~~~~~~---~~~~~L~~L~Ls~n~l~~~~p----~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L 644 (911)
+|++|++++|.+.+..|.. ..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 3444444444444444433 234555555555555554433 234456777777777777776666777777777
Q ss_pred cEEEccCCccccc--C--ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccccccc
Q 043567 645 RFLLLRGNNLEGQ--I--PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYY 720 (911)
Q Consensus 645 ~~L~L~~N~l~~~--i--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 720 (911)
++|+|++|++.+. + +..+..+++|++|+|++|+++. +|.....+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l------------------------------- 219 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL------------------------------- 219 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH-------------------------------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH-------------------------------
Confidence 7777777776542 2 2223567777888888777752 12110000
Q ss_pred ccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCC---CCCCEEECCCCc
Q 043567 721 SSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGEL---QEIPVLNMSHNF 797 (911)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l---~~L~~L~Ls~N~ 797 (911)
...++.|+.|||++|++++.+|+.++.+ ++|++|+|++|+
T Consensus 220 -------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 220 -------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp -------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred -------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence 0112466778888888887777777776 588888888888
Q ss_pred CCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567 798 LSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 798 l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
++ .+|..+. ++|+.|||++|++++. |. +..++.|++|++++|+++.
T Consensus 263 l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 263 LE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88 6777775 6888888888888863 33 5677888888888888764
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.3e-21 Score=202.82 Aligned_cols=192 Identities=26% Similarity=0.331 Sum_probs=163.8
Q ss_pred CCccccceeecCCCCcEEEEecCCCCcccccccccccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCC
Q 043567 77 DCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL 156 (911)
Q Consensus 77 ~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l 156 (911)
+||.|.|.+|... ...+++++..+ ..+.. .+ .+++++|+|++|.+++..+ ..+.++
T Consensus 3 ~Cp~~~gC~C~~~---~~~l~~~~~~l--------------~~~p~-~~--~~~l~~L~L~~n~l~~~~~----~~~~~l 58 (251)
T 3m19_A 3 TCETVTGCTCNEG---KKEVDCQGKSL--------------DSVPS-GI--PADTEKLDLQSTGLATLSD----ATFRGL 58 (251)
T ss_dssp -CHHHHSSEEEGG---GTEEECTTCCC--------------SSCCS-CC--CTTCCEEECTTSCCCCCCT----TTTTTC
T ss_pred cCCCCCceEcCCC---CeEEecCCCCc--------------cccCC-CC--CCCCCEEEccCCCcCccCH----hHhcCc
Confidence 6999999999532 23467777654 11111 12 2589999999999999877 678999
Q ss_pred CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEE
Q 043567 157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236 (911)
Q Consensus 157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 236 (911)
++|++|++++|.+.+..+..+.++++|++|+|++|++++ ++...|..+++|++|+|++|+++ .++...|.++++|++|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEE
Confidence 999999999999999888899999999999999999984 55577899999999999999998 6666678999999999
Q ss_pred eccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCc
Q 043567 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294 (911)
Q Consensus 237 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 294 (911)
+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+.+.
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999997777899999999999999999988888899999999999999999865
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.1e-22 Score=220.94 Aligned_cols=253 Identities=21% Similarity=0.267 Sum_probs=158.4
Q ss_pred CccEEEccCCcCCcCCChhHHHhc--cCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCc-ccHHHHhcccccc
Q 043567 402 FLHHLDISSNNFTGKLPQDMGIIL--QKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE-LSAALLTSCFSLL 478 (911)
Q Consensus 402 ~L~~L~ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~-i~~~~~~~~~~L~ 478 (911)
.++.++++++.+. |..+. .+ ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~---- 117 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQC---- 117 (336)
T ss_dssp TSSEEECTTCBCC---HHHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTB----
T ss_pred hheeeccccccCC---HHHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhC----
Confidence 3677777777665 33333 24 6777777777777765554 44567777777777766543 332 23344
Q ss_pred eeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC-cCccc-CCcCccCcCCCcEEEccC
Q 043567 479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN-MLSGH-IPHWMGNLSYLEVLLMSK 556 (911)
Q Consensus 479 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~ 556 (911)
++|++|++++|++++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++
T Consensus 118 --------------------~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 118 --------------------SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp --------------------CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred --------------------CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 45555555555555455555555555555555555 34432 344455556666666666
Q ss_pred c-ccccc-cchhhccCC-CCcEEEccCc--ccc-cccCccc-ccccccEEEcccCc-ccccccccccCCCCCCEEeCCCC
Q 043567 557 N-FFEGN-IPVQLLNHR-RLQLFSVSEN--YLS-GFMTTSF-NISSVEHLYLQKNS-LSGPIPIALFRSSNLLTLDLRDN 628 (911)
Q Consensus 557 n-~l~~~-~p~~l~~~~-~L~~L~ls~n--~l~-~~~~~~~-~~~~L~~L~Ls~n~-l~~~~p~~l~~~~~L~~L~Ls~N 628 (911)
| .+++. ++..+..++ +|++|++++| .++ +.++..+ .+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 6 55543 455566666 6666666666 333 3334333 66777778888877 66677778888899999999998
Q ss_pred c-ccccCchhhhcCCCccEEEccCCcccccCChhhhcC-CCCCeEEcCCCcCCCCCCccccc
Q 043567 629 G-FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL-TGLGMMDLSHNKFNGSIPSCFTN 688 (911)
Q Consensus 629 ~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~ 688 (911)
. +.......+.++++|++|++++| ++.. .+..+ ..+..|++++|++++..|..+++
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 32222235788999999999998 4422 23333 23666778999999999987764
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=211.38 Aligned_cols=201 Identities=20% Similarity=0.134 Sum_probs=141.7
Q ss_pred cccceeeccCcccccccCCCC--CCCCCCCEEEccCcccccccc----ccccCCCCCcEEECcCCcCcccCCcCccCcCC
Q 043567 475 FSLLWLGLSDNNFYGRIFPGY--MNLTQLQYLYLENNKFSGKIE----EGLLKSKKLVELRMSSNMLSGHIPHWMGNLSY 548 (911)
Q Consensus 475 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 548 (911)
++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445556666666555555555 666777777777777765433 23345677777777777777666677777777
Q ss_pred CcEEEccCcccccc--cc--hhhccCCCCcEEEccCcccccccCc---cc-ccccccEEEcccCcccccccccccCC---
Q 043567 549 LEVLLMSKNFFEGN--IP--VQLLNHRRLQLFSVSENYLSGFMTT---SF-NISSVEHLYLQKNSLSGPIPIALFRS--- 617 (911)
Q Consensus 549 L~~L~L~~n~l~~~--~p--~~l~~~~~L~~L~ls~n~l~~~~~~---~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~--- 617 (911)
|++|++++|++.+. ++ ..+..+++|++|++++|.++...+. .+ .+++|++|++++|++++.+|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 77777777776543 22 2235677777777777777643221 22 56788888888888887777777776
Q ss_pred CCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567 618 SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG 680 (911)
Q Consensus 618 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 680 (911)
++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58999999999998 6777764 7899999999999853 43 5778899999999998863
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.5e-20 Score=202.95 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=61.5
Q ss_pred CCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEE
Q 043567 521 KSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLY 600 (911)
Q Consensus 521 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ 600 (911)
.+++|++|++++|.++. +| .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++.
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-------------- 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-------------- 100 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--------------
Confidence 44556666666666552 33 355555555555555555432 22 44444444444444433321
Q ss_pred cccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567 601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 601 Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
+ .+..+++|++|++++|++++ +| .+..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 101 ----------~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 101 ----------S-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ----------G-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ----------h-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 1 34445555555555555553 22 25555555555555555553222 445555555555555544
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.6e-21 Score=197.86 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=16.4
Q ss_pred CCCCEEECCCCc-CCcccccccccc-CCCCEEeccCCcCc
Q 043567 786 QEIPVLNMSHNF-LSESIPESFSNL-KMIESLDLSHNRLS 823 (911)
Q Consensus 786 ~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~LdLs~N~l~ 823 (911)
++|+.|+|++|+ +++..|..++.+ ++|+.||+++|+++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 344444444442 443333344444 44444444444444
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.1e-20 Score=200.37 Aligned_cols=193 Identities=16% Similarity=0.269 Sum_probs=152.5
Q ss_pred CCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEc
Q 043567 570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL 649 (911)
Q Consensus 570 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 649 (911)
+++|+.|++++|.+... +....+++|++|++++|.+++..+ +..+++|++|++++|++++ +| .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 34444444444444432 222255666777777777764433 8889999999999999986 34 7899999999999
Q ss_pred cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567 650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL 729 (911)
Q Consensus 650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l 729 (911)
++|++++ +|. +..+++|+.|++++|++++..| +.
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~------------------------------------------ 148 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LA------------------------------------------ 148 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GG------------------------------------------
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--cc------------------------------------------
Confidence 9999986 443 8999999999999999875322 22
Q ss_pred CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc
Q 043567 730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL 809 (911)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l 809 (911)
.++.|+.|++++|++++. |. +..+++|+.|++++|++++..| +..+
T Consensus 149 ------------------------------~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l 194 (308)
T 1h6u_A 149 ------------------------------GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASL 194 (308)
T ss_dssp ------------------------------GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred ------------------------------CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCC
Confidence 235788999999999964 44 8999999999999999997654 8999
Q ss_pred CCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567 810 KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849 (911)
Q Consensus 810 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 849 (911)
++|+.|++++|++++..| +..++.|++|++++|++++.
T Consensus 195 ~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred CCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 999999999999997664 89999999999999999873
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.8e-20 Score=193.13 Aligned_cols=195 Identities=15% Similarity=0.212 Sum_probs=114.8
Q ss_pred ccceeeccCcccccccCCCCCCCCCCCEEEccCcc-ccccccccccCCCCCcEEECcC-CcCcccCCcCccCcCCCcEEE
Q 043567 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNK-FSGKIEEGLLKSKKLVELRMSS-NMLSGHIPHWMGNLSYLEVLL 553 (911)
Q Consensus 476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 553 (911)
+|+.|++++|++++..+..|..+++|++|++++|+ ++...+..|..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444444444445555666666666664 5544444555666666666665 666554445556666666666
Q ss_pred ccCcccccccchhhccCCCCc---EEEccCc-ccccccCccc-cccccc-EEEcccCcccccccccccCCCCCCEEeCCC
Q 043567 554 MSKNFFEGNIPVQLLNHRRLQ---LFSVSEN-YLSGFMTTSF-NISSVE-HLYLQKNSLSGPIPIALFRSSNLLTLDLRD 627 (911)
Q Consensus 554 L~~n~l~~~~p~~l~~~~~L~---~L~ls~n-~l~~~~~~~~-~~~~L~-~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~ 627 (911)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+ .+++|+ +|++++|+++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 66666654 444 55555555 6666666 5655555544 566666 6666666666 4444433346677777777
Q ss_pred Cc-ccccCchhhhcC-CCccEEEccCCcccccCChhhhcCCCCCeEEcCCC
Q 043567 628 NG-FSGVIPHQINEC-SNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676 (911)
Q Consensus 628 N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N 676 (911)
|+ +++..+..+..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 74 665555666666 77777777777776 34433 4566777777655
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=7.9e-20 Score=211.50 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=54.9
Q ss_pred CCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCC
Q 043567 548 YLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRD 627 (911)
Q Consensus 548 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~ 627 (911)
+++.|++++|.+++ +|..+. ++|++|++++|.++. +| ..+++|++|++++|++++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 56666666666654 554442 455555555555552 22 123445555555555543 443 332 455555555
Q ss_pred CcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567 628 NGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 628 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
|++++ +|. .+++|++|++++|++++ +|. .+++|+.|+|++|+++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 55443 333 34444445555444443 333 2344444444444444
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.1e-19 Score=200.20 Aligned_cols=219 Identities=17% Similarity=0.143 Sum_probs=125.2
Q ss_pred EEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCE-Eecc
Q 043567 161 ILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV-LNLE 239 (911)
Q Consensus 161 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-L~Ls 239 (911)
.++.++++++ .+|..+ .+++++|+|++|+|+ .++...|.++++|++|+|++|++.+.++..+|.++++|++ +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4445555444 233333 245566666666665 4444556666666666666666654555555666665554 3444
Q ss_pred CCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcccc
Q 043567 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ 319 (911)
Q Consensus 240 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~ 319 (911)
.|+++...|..|..+++|++|++++|++++..+..+....++..|++.+ ++.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~-------------------------~~~i~~ 143 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-------------------------NINIHT 143 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES-------------------------CTTCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc-------------------------cccccc
Confidence 5566655555566666666666666666544444444444444555443 333333
Q ss_pred ccccCcCCCC-CceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCC
Q 043567 320 VQTENFLPTF-QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD 398 (911)
Q Consensus 320 ~~~~~~~~~~-~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 398 (911)
++...+.... .++.|++++|.+..+|..++...+|++|++++++..+.+|..++.++++|++|++++|+++.. |..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l---p~~ 220 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL---PSY 220 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC---CSS
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc---Chh
Confidence 3333343332 567788888888888888777778888888764444477777776777777777777766632 233
Q ss_pred CCCCccEEEccCC
Q 043567 399 KHDFLHHLDISSN 411 (911)
Q Consensus 399 ~~~~L~~L~ls~n 411 (911)
.+.+|+.|.+.++
T Consensus 221 ~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 221 GLENLKKLRARST 233 (350)
T ss_dssp SCTTCCEEECTTC
T ss_pred hhccchHhhhccC
Confidence 3444444444433
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=7e-20 Score=211.95 Aligned_cols=188 Identities=22% Similarity=0.253 Sum_probs=98.5
Q ss_pred ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEcc
Q 043567 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS 555 (911)
Q Consensus 476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 555 (911)
+++.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444443 33322 144555555555555 334 234555555555555554 444 333 55555555
Q ss_pred CcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCc
Q 043567 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIP 635 (911)
Q Consensus 556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p 635 (911)
+|.+++ +|. .+++|+.|++++|.+++. |. .+++|++|++++|++++ +|. +. ++|+.|+|++|+++ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 555554 443 345555555555555552 22 34556666666666554 444 33 56666666666665 445
Q ss_pred hhhhcCCCc-------cEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccc
Q 043567 636 HQINECSNL-------RFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT 690 (911)
Q Consensus 636 ~~l~~l~~L-------~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 690 (911)
. +.. +| ++|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 4 333 45 66666666666 4566666666666666666666666666555543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.1e-19 Score=180.96 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=41.5
Q ss_pred cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567 593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD 672 (911)
Q Consensus 593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~ 672 (911)
+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 33444444444444433333344455555555555555544444445555555555555555544343444555555555
Q ss_pred cCCCcCC
Q 043567 673 LSHNKFN 679 (911)
Q Consensus 673 Ls~N~l~ 679 (911)
+++|++.
T Consensus 155 l~~N~~~ 161 (208)
T 2o6s_A 155 LHDNPWD 161 (208)
T ss_dssp CCSCCBC
T ss_pred ecCCCee
Confidence 5555443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.9e-19 Score=182.50 Aligned_cols=174 Identities=20% Similarity=0.255 Sum_probs=125.8
Q ss_pred EEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567 598 HLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK 677 (911)
Q Consensus 598 ~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 677 (911)
.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555555554 344433 2467778888887776656667777888888888888876555566778888888888887
Q ss_pred CCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeecc
Q 043567 678 FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN 757 (911)
Q Consensus 678 l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (911)
+++..+..+..
T Consensus 88 l~~~~~~~~~~--------------------------------------------------------------------- 98 (208)
T 2o6s_A 88 LQSLPNGVFDK--------------------------------------------------------------------- 98 (208)
T ss_dssp CCCCCTTTTTT---------------------------------------------------------------------
T ss_pred CCccCHhHhcC---------------------------------------------------------------------
Confidence 77443333322
Q ss_pred CCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCC
Q 043567 758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS 837 (911)
Q Consensus 758 ~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 837 (911)
+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..++.+++|+.|++++|.+.+.. +.|+
T Consensus 99 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~ 168 (208)
T 2o6s_A 99 ---LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIR 168 (208)
T ss_dssp ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTH
T ss_pred ---ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHH
Confidence 246677888888888666666788888888888888888777777888888888888888777543 4678
Q ss_pred eEeccCCcCeecCCCC
Q 043567 838 NFNVSYNNLSGLIPDK 853 (911)
Q Consensus 838 ~L~ls~N~l~g~iP~~ 853 (911)
+|+++.|+++|.||..
T Consensus 169 ~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 169 YLSEWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHHHHCTTTBBCT
T ss_pred HHHHHHHhCCceeecc
Confidence 8888888888888864
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.1e-19 Score=195.49 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=155.1
Q ss_pred cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS 483 (911)
Q Consensus 404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~ 483 (911)
++++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|++.+.+|...|.++++++.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~---- 83 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE---- 83 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE----
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh----
Confidence 45666777776 677765 4577888888888875555567778888888888887765666544444443332
Q ss_pred CcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCc-ccccc
Q 043567 484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN-FFEGN 562 (911)
Q Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~ 562 (911)
.+.+..|+++...|..|..+++|++|++++|++.+..+..+....++..+++.++ ++...
T Consensus 84 -------------------~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 84 -------------------IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp -------------------EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred -------------------hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 2334445555444555555555556666555555444444445555566666443 34322
Q ss_pred cchhhccC-CCCcEEEccCcccccccCcccccccccEEEcccCcccccccc-cccCCCCCCEEeCCCCcccccCchhhhc
Q 043567 563 IPVQLLNH-RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNGFSGVIPHQINE 640 (911)
Q Consensus 563 ~p~~l~~~-~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~l~~~~p~~l~~ 640 (911)
.+..+..+ ..++.|++++|+++...+..+...+|+++++++|+..+.+|. .|..+++|++||+++|+++. +|.. .
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~ 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--G 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--S
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--h
Confidence 22333443 356777777777776666666667788888876444445654 57888999999999999984 4542 2
Q ss_pred CCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567 641 CSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK 677 (911)
Q Consensus 641 l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 677 (911)
+.+|+.|.+.++.-...+| .+.++++|+.++++++.
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 4566777766655555777 47889999999997654
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=183.88 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=120.5
Q ss_pred CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567 621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP-NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR 699 (911)
Q Consensus 621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~ 699 (911)
+.+++++|.++ .+|..+. ..+++|+|++|++++..| ..+..+++|+.|+|++|++++..|..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46666666666 3555443 345677777777776544 34667777777777777776544444432
Q ss_pred cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567 700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779 (911)
Q Consensus 700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 779 (911)
+++|+.|+|++|++++..|
T Consensus 80 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 80 -------------------------------------------------------------ASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCCCCG
T ss_pred -------------------------------------------------------------CCCCCEEECCCCccCccCH
Confidence 2356778888888887777
Q ss_pred ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852 (911)
Q Consensus 780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 852 (911)
..++.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..++.|++|++++|++++..+.
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 7788899999999999999988899999999999999999999998899999999999999999999987663
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=4.8e-18 Score=173.44 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=64.7
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
+|+.|+|++|+|++..+..+..+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..++.|++|+++
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 45566667776664444456777788888888888887777778888888888888888887777777778888888888
Q ss_pred CCcCeec
Q 043567 843 YNNLSGL 849 (911)
Q Consensus 843 ~N~l~g~ 849 (911)
+|++...
T Consensus 161 ~N~~~c~ 167 (220)
T 2v9t_B 161 QNPFICD 167 (220)
T ss_dssp SSCEECS
T ss_pred CCCcCCC
Confidence 8887653
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=173.43 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=131.6
Q ss_pred cEEEcccCcccccccccccCCCCCCEEeCCCCcccccCc-hhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCC
Q 043567 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIP-HQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH 675 (911)
Q Consensus 597 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~ 675 (911)
+.+++++|.++ .+|..+. ..+++|++++|++++..| ..+..+++|++|+|++|++++..|..+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 4666553 456899999999987755 4578899999999999999988888899999999999999
Q ss_pred CcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceee
Q 043567 676 NKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEV 755 (911)
Q Consensus 676 N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (911)
|++++..|..|..
T Consensus 91 N~l~~~~~~~~~~------------------------------------------------------------------- 103 (220)
T 2v70_A 91 NRLENVQHKMFKG------------------------------------------------------------------- 103 (220)
T ss_dssp SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred CccCccCHhHhcC-------------------------------------------------------------------
Confidence 9998766655543
Q ss_pred ccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCC
Q 043567 756 YNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827 (911)
Q Consensus 756 ~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip 827 (911)
+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus 104 -----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 104 -----LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp -----CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred -----CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 3467889999999998889999999999999999999999999999999999999999999997654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=9.1e-18 Score=179.35 Aligned_cols=170 Identities=21% Similarity=0.369 Sum_probs=111.5
Q ss_pred cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567 593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD 672 (911)
Q Consensus 593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~ 672 (911)
+++|++|++++|.+.. ++ .+..+++|++|++++|++++..| +..+++|++|++++|++++ +| .+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 4555566666665553 22 35666677777777777765433 6677777777777777764 33 366777777777
Q ss_pred cCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccc
Q 043567 673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNR 752 (911)
Q Consensus 673 Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 752 (911)
+++|++++. | .+.
T Consensus 119 L~~n~i~~~-~-~l~----------------------------------------------------------------- 131 (291)
T 1h6t_A 119 LEHNGISDI-N-GLV----------------------------------------------------------------- 131 (291)
T ss_dssp CTTSCCCCC-G-GGG-----------------------------------------------------------------
T ss_pred CCCCcCCCC-h-hhc-----------------------------------------------------------------
Confidence 777776541 1 111
Q ss_pred eeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCC
Q 043567 753 YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTE 832 (911)
Q Consensus 753 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~ 832 (911)
.++.|+.|++++|++++. ..++.+++|+.|++++|++++..| ++.+++|+.|++++|++++ +| .+..
T Consensus 132 -------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~ 198 (291)
T 1h6t_A 132 -------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAG 198 (291)
T ss_dssp -------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTT
T ss_pred -------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhcc
Confidence 123566677777777743 457777777778888777776554 7777778888888887775 34 3777
Q ss_pred CCCCCeEeccCCcCee
Q 043567 833 LNFLSNFNVSYNNLSG 848 (911)
Q Consensus 833 l~~L~~L~ls~N~l~g 848 (911)
++.|++|++++|+++.
T Consensus 199 l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 199 LKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCSEEEEEEEEEEC
T ss_pred CCCCCEEECcCCcccC
Confidence 7778888888877765
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.2e-17 Score=171.73 Aligned_cols=156 Identities=23% Similarity=0.257 Sum_probs=116.9
Q ss_pred CCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR 699 (911)
Q Consensus 620 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~ 699 (911)
.+.++.++++++ .+|..+. ++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 345666666665 4555443 56777777777777666777777777777777777775333222222
Q ss_pred cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567 700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779 (911)
Q Consensus 700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 779 (911)
++.|+.|||++|++++..+
T Consensus 87 -------------------------------------------------------------l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 87 -------------------------------------------------------------LTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCCCCT
T ss_pred -------------------------------------------------------------CCCcCEEECCCCcCCccCh
Confidence 2456778888888886666
Q ss_pred ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCC
Q 043567 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 851 (911)
..+..+++|++|+|++|+++ .+|..+..+++|+.|||++|+|++..+..+..++.|++|++++|++.+..+
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 67788899999999999998 788889999999999999999997777778889999999999999988765
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.6e-17 Score=169.15 Aligned_cols=136 Identities=26% Similarity=0.272 Sum_probs=81.6
Q ss_pred CCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEe
Q 043567 158 RLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237 (911)
Q Consensus 158 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 237 (911)
+|++|++++|.+++..+..|.++++|++|+|++|++. .++...|.++++|++|+|++|+++ .++...|..+++|++|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEe
Confidence 3444444444444444444555555555555555553 333344556666666666666665 44444466666777777
Q ss_pred ccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccC
Q 043567 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296 (911)
Q Consensus 238 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 296 (911)
|++|.++. +|..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 119 Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 77776663 56666677777777777777775555566777777777777777765443
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.4e-20 Score=217.18 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=29.3
Q ss_pred ccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccc-cccccccCCCCEEeccCCcCccc
Q 043567 764 MVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI-PESFSNLKMIESLDLSHNRLSGQ 825 (911)
Q Consensus 764 L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~l~g~ 825 (911)
|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..++.+++|+.|||++|++++.
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 3334444444443 34 4445555555555555555444 55555555555555555555543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=4.4e-18 Score=188.02 Aligned_cols=104 Identities=25% Similarity=0.209 Sum_probs=48.4
Q ss_pred cEEEccCcccccccCcccccccccEEEcccCccccccccccc-CCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCC
Q 043567 574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALF-RSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN 652 (911)
Q Consensus 574 ~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 652 (911)
+.++++++.++..+.. + ...++.|+|++|++++..+..+. .+++|+.|+|++|++++..|..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-L-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-C-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-C-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3455555555443221 1 12344455555555443333343 4445555555555554444444444555555555555
Q ss_pred cccccCChhhhcCCCCCeEEcCCCcCC
Q 043567 653 NLEGQIPNQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 653 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 679 (911)
++++..+..+..+++|+.|+|++|+++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 554444444444444444444444444
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.7e-17 Score=169.37 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=129.5
Q ss_pred cEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCC
Q 043567 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676 (911)
Q Consensus 597 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N 676 (911)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45677777776 5666554 68899999999999877778899999999999999999888999999999999999999
Q ss_pred cCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeec
Q 043567 677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVY 756 (911)
Q Consensus 677 ~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (911)
++++..+..|..
T Consensus 91 ~l~~l~~~~f~~-------------------------------------------------------------------- 102 (220)
T 2v9t_B 91 KITELPKSLFEG-------------------------------------------------------------------- 102 (220)
T ss_dssp CCCCCCTTTTTT--------------------------------------------------------------------
T ss_pred cCCccCHhHccC--------------------------------------------------------------------
Confidence 988433333322
Q ss_pred cCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567 757 NGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824 (911)
Q Consensus 757 ~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 824 (911)
+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|++|.+..
T Consensus 103 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 103 ----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ----CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 3477889999999998889999999999999999999999888889999999999999999975
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=4.7e-20 Score=214.76 Aligned_cols=217 Identities=19% Similarity=0.149 Sum_probs=156.4
Q ss_pred CCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcE
Q 043567 496 MNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQL 575 (911)
Q Consensus 496 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 575 (911)
..+++|+.|+|++|+++ .+|..++.+++|++|++++|......|.. +..+...+.+|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 34556666666666665 55666666666666666544321111100 0112245567777777777777
Q ss_pred EE-ccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcc
Q 043567 576 FS-VSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNL 654 (911)
Q Consensus 576 L~-ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 654 (911)
|+ ++.|.+ ..|+.+.+++|.++...+ ..|+.|+|++|++++ +|. ++.+++|+.|+|++|++
T Consensus 414 L~~l~~n~~----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 414 VDPMRAAYL----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp HCGGGHHHH----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred Ccchhhccc----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 77 555543 345666677777764322 248999999999996 676 99999999999999999
Q ss_pred cccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCC
Q 043567 655 EGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEER 734 (911)
Q Consensus 655 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~ 734 (911)
+ .+|..++.+++|+.|+|++|++++ +| .++.
T Consensus 476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~---------------------------------------------- 506 (567)
T 1dce_A 476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVAN---------------------------------------------- 506 (567)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT----------------------------------------------
T ss_pred c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC----------------------------------------------
Confidence 9 889999999999999999999986 55 4433
Q ss_pred CCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccC-CccccCCCCCCEEECCCCcCCcccccc---ccccC
Q 043567 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEI-PSEIGELQEIPVLNMSHNFLSESIPES---FSNLK 810 (911)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~i~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~ 810 (911)
+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|++++.+|.. +..++
T Consensus 507 --------------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 507 --------------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp --------------------------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred --------------------------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 347888999999999887 999999999999999999999876632 23478
Q ss_pred CCCEEec
Q 043567 811 MIESLDL 817 (911)
Q Consensus 811 ~L~~LdL 817 (911)
+|+.||+
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8888875
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.3e-17 Score=195.41 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=118.5
Q ss_pred CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEE
Q 043567 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR 529 (911)
Q Consensus 450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 529 (911)
..+..+.+..+.+.+.++. ..+++|+.|++++|.+... +.+..+++|+.|+|++|++++..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3455556666666644432 3556677777777666543 245566666666666666664433 55666666666
Q ss_pred CcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccc
Q 043567 530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP 609 (911)
Q Consensus 530 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~ 609 (911)
|++|++++ +| .+..+++|+.|+|++|.+++ + ..+. .+++|+.|+|++|++++.
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~-----------------------~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLV-----------------------HLPQLESLYLGNNKITDI 146 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGG-----------------------GCTTCSEEECCSSCCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-cccc-----------------------CCCccCEEECCCCccCCc
Confidence 66666653 22 45555555555555555543 1 2234 445555555555555543
Q ss_pred ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC
Q 043567 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS 681 (911)
Q Consensus 610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ 681 (911)
..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++++ + ..+..+++|+.|+|++|++++.
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 456677777777777777776555 7777788888888887775 3 3577788888888888877653
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.4e-17 Score=174.91 Aligned_cols=170 Identities=29% Similarity=0.399 Sum_probs=139.4
Q ss_pred ccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcC
Q 043567 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSK 204 (911)
Q Consensus 125 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 204 (911)
+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTT
T ss_pred hhhcCcccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhcc
Confidence 45678899999999988765 347788999999999999987655 8899999999999999874 33 4889
Q ss_pred CCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCee
Q 043567 205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284 (911)
Q Consensus 205 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 284 (911)
+++|++|++++|++++ ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|++|
T Consensus 111 l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp CTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 9999999999999884 43 488899999999999999885 578889999999999999986554 8889999999
Q ss_pred eccCCcCCCccChhhhcccccccEEEecCCC
Q 043567 285 ALFDNNFEGTFPLSSLANHSKLEVLLLSTRN 315 (911)
Q Consensus 285 ~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~ 315 (911)
++++|.+++ ++ .+..+++|+.|++++|.
T Consensus 184 ~L~~N~i~~-l~--~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 184 YLSKNHISD-LR--ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCB-CG--GGTTCTTCSEEEEEEEE
T ss_pred ECCCCcCCC-Ch--hhccCCCCCEEECcCCc
Confidence 999998874 44 47777777777776543
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.3e-17 Score=166.34 Aligned_cols=113 Identities=25% Similarity=0.329 Sum_probs=85.3
Q ss_pred ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567 762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV 841 (911)
Q Consensus 762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 841 (911)
+.|+.|+|++|++++.+|..|+.+++|++|+|++|++++..|..|+++++|++|||++|++++.+|..+..++.|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 35667778888888777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCcCeecCCCCCCCCccCccccCCCCCCCCCc
Q 043567 842 SYNNLSGLIPDKGQFATFDESSYRGNLHLCGPT 874 (911)
Q Consensus 842 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 874 (911)
++|+++|..|.......+....+.++...|+.|
T Consensus 134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 888888877632111112223445666667655
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=2.9e-17 Score=192.32 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=159.1
Q ss_pred ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 504 (911)
+..+..+.+..+.+.+.++ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 4456667788888776554 568999999999999997 5653 5789999999999999988665 8899999999
Q ss_pred EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS 584 (911)
Q Consensus 505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~ 584 (911)
+|++|++++ +| .+..+++|++|+|++|++++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 999999985 33 788999999999999999863 4688999999999999999864 67888889999999988888
Q ss_pred cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCccccc
Q 043567 585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV 633 (911)
Q Consensus 585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~ 633 (911)
+..| ...+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+.
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 8766 33778888888888888753 3577778888888888887754
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.3e-17 Score=165.40 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=110.1
Q ss_pred cCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccccccc
Q 043567 615 FRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694 (911)
Q Consensus 615 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~ 694 (911)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 44566777777777776 455 5677777777777777554 2346777777777777777776555544332
Q ss_pred CCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcc
Q 043567 695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKL 774 (911)
Q Consensus 695 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 774 (911)
++.|+.|++++|++
T Consensus 111 ------------------------------------------------------------------l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 111 ------------------------------------------------------------------LTSLTLLDISHSAH 124 (197)
T ss_dssp ------------------------------------------------------------------CTTCCEEECCSSBC
T ss_pred ------------------------------------------------------------------CCCCCEEEecCCcc
Confidence 23567788888888
Q ss_pred cccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567 775 TGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 775 ~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
++..|..++.+++|++|++++|++.+.+| .++.+++|+.|++++|++++ +| .+..++.|++|++++|++.+
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 87778888888888888888887334566 58888888888888888886 44 67888888888888888754
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.8e-17 Score=172.73 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=142.6
Q ss_pred ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM 671 (911)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L 671 (911)
.+..+..+++++|.+++ ++ .+..+++|+.|++++|.++ .+| .+..+++|++|++++|++++..| +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 45667778888888874 33 5778899999999999998 456 78899999999999999986544 8899999999
Q ss_pred EcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeecc
Q 043567 672 DLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN 751 (911)
Q Consensus 672 ~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 751 (911)
+|++|++++ +|...
T Consensus 91 ~L~~N~l~~-l~~~~----------------------------------------------------------------- 104 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIP----------------------------------------------------------------- 104 (263)
T ss_dssp ECCSSCCSC-CTTCC-----------------------------------------------------------------
T ss_pred ECCCCccCC-cCccc-----------------------------------------------------------------
Confidence 999999874 22200
Q ss_pred ceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCC
Q 043567 752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT 831 (911)
Q Consensus 752 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~ 831 (911)
. +.|+.|++++|++++ +| .++.+++|++|+|++|++++. | .++.+++|+.||+++|++++. ..+.
T Consensus 105 --------~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~ 169 (263)
T 1xeu_A 105 --------S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLT 169 (263)
T ss_dssp --------C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred --------c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhc
Confidence 0 367889999999986 44 589999999999999999865 4 689999999999999999987 6789
Q ss_pred CCCCCCeEeccCCcCeec
Q 043567 832 ELNFLSNFNVSYNNLSGL 849 (911)
Q Consensus 832 ~l~~L~~L~ls~N~l~g~ 849 (911)
.++.|++|++++|++++.
T Consensus 170 ~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEeCCCCcccCC
Confidence 999999999999999876
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=4.7e-18 Score=204.24 Aligned_cols=225 Identities=18% Similarity=0.207 Sum_probs=113.6
Q ss_pred CCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEc
Q 043567 499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSV 578 (911)
Q Consensus 499 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l 578 (911)
+.++.|+|.+|.+.. .+.. .++.++|+.|.+.+ +++..|.+. ..|..+..++.|+.|++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 456777777777664 2222 24445555554432 233334443 44566666777777777
Q ss_pred cCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccC
Q 043567 579 SENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI 658 (911)
Q Consensus 579 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i 658 (911)
++|.+....+..+.+++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++.+++|++|+|++|.|+ .+
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 77777654444457788888888888888 78888889999999999999998 77999999999999999999987 78
Q ss_pred ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcc
Q 043567 659 PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFT 738 (911)
Q Consensus 659 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 738 (911)
|..|+.+++|+.|+|++|+++|.+|..+..+..
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----------------------------------------------- 341 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----------------------------------------------- 341 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----------------------------------------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----------------------------------------------
Confidence 888999999999999999999888877655321
Q ss_pred cccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCC--------cCCccccccccccC
Q 043567 739 FDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN--------FLSESIPESFSNLK 810 (911)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N--------~l~g~ip~~l~~l~ 810 (911)
....++|++|.++|.+|.. |..|++++| .+.+.++..+.++.
T Consensus 342 ------------------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~ 391 (727)
T 4b8c_D 342 ------------------------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLA 391 (727)
T ss_dssp ------------------------HHHHHHHHHCCCCCCCCCC-------------------------------------
T ss_pred ------------------------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhccc
Confidence 1122678888888888764 445666666 45555555566666
Q ss_pred CCCEEeccCCcCcc
Q 043567 811 MIESLDLSHNRLSG 824 (911)
Q Consensus 811 ~L~~LdLs~N~l~g 824 (911)
.++...+++|-+.+
T Consensus 392 ~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------CCCG
T ss_pred ccceeeeecccccc
Confidence 77777777777753
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=7.2e-17 Score=178.27 Aligned_cols=175 Identities=22% Similarity=0.230 Sum_probs=123.9
Q ss_pred CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCcc-CcCCCcEEEccCcccccccchhhccCCCCcEEEccC
Q 043567 502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG-NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE 580 (911)
Q Consensus 502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~ 580 (911)
+.+++++++++ .+|..+ .+.++.|+|++|++++..+..+. .+++|+.|+|++|++++..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45566666665 345433 23466777777777666666665 677777777777777765556677777777777777
Q ss_pred cccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhh---hcCCCccEEEccCCcccc
Q 043567 581 NYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI---NECSNLRFLLLRGNNLEG 656 (911)
Q Consensus 581 n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~ 656 (911)
|++++..+..+ .+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+ ..+++|++|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666655 67778888888888877777788888888888888888885433334 568888999999998886
Q ss_pred cCChhhhcCCC--CCeEEcCCCcCC
Q 043567 657 QIPNQICQLTG--LGMMDLSHNKFN 679 (911)
Q Consensus 657 ~ip~~l~~l~~--L~~L~Ls~N~l~ 679 (911)
..+..+..++. ++.|+|++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55567777776 478899998876
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.6e-18 Score=205.26 Aligned_cols=227 Identities=19% Similarity=0.179 Sum_probs=114.1
Q ss_pred CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEc
Q 043567 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYL 601 (911)
Q Consensus 523 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~L 601 (911)
+.++.|+|.+|.+... +. ..|+.++|+.|.+. .++++.|.+. ..+..+ .++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hh-----hHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 4466667766666532 22 23445555555544 2234445444 334444 7788888888
Q ss_pred ccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC
Q 043567 602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS 681 (911)
Q Consensus 602 s~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ 681 (911)
++|.+. .+|..++.+++|++|+|++|+++ .+|..|+++++|++|+|++|+|+ .+|..++.+++|++|+|++|.++ .
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 888887 67777778888888888888888 77888888888888888888888 77888888888888888888886 6
Q ss_pred CCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcC
Q 043567 682 IPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNL 761 (911)
Q Consensus 682 ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 761 (911)
+|..|+++
T Consensus 308 lp~~~~~l------------------------------------------------------------------------ 315 (727)
T 4b8c_D 308 LPWEFGNL------------------------------------------------------------------------ 315 (727)
T ss_dssp CCSSTTSC------------------------------------------------------------------------
T ss_pred cChhhhcC------------------------------------------------------------------------
Confidence 67655443
Q ss_pred ccccEEEcccCcccccCCccccCCCCC-CEEECCCCcCCccccccccccCCCCEEeccCC--------cCcccCCCCCCC
Q 043567 762 DYMVGLDLSCNKLTGEIPSEIGELQEI-PVLNMSHNFLSESIPESFSNLKMIESLDLSHN--------RLSGQIPPKLTE 832 (911)
Q Consensus 762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L-~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N--------~l~g~ip~~l~~ 832 (911)
++|+.|+|++|.|+|.+|..+..+... ..|+|++|.++|.+|.. |+.|++++| .|.+.++..+.+
T Consensus 316 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence 356778888888888888877654322 34788888888888864 455666666 455555555667
Q ss_pred CCCCCeEeccCCcCeecCCC
Q 043567 833 LNFLSNFNVSYNNLSGLIPD 852 (911)
Q Consensus 833 l~~L~~L~ls~N~l~g~iP~ 852 (911)
+..+....+++|-+.+....
T Consensus 390 l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp ------------CCCGGGCC
T ss_pred ccccceeeeeccccccccCc
Confidence 77777888888888765543
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7.6e-17 Score=161.60 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=114.6
Q ss_pred ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM 671 (911)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L 671 (911)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4566777777777776 455 5777788888888888665 33477788888888888888887777888888888888
Q ss_pred EcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeecc
Q 043567 672 DLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN 751 (911)
Q Consensus 672 ~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 751 (911)
++++|++++..|..+..
T Consensus 118 ~Ls~n~i~~~~~~~l~~--------------------------------------------------------------- 134 (197)
T 4ezg_A 118 DISHSAHDDSILTKINT--------------------------------------------------------------- 134 (197)
T ss_dssp ECCSSBCBGGGHHHHTT---------------------------------------------------------------
T ss_pred EecCCccCcHhHHHHhh---------------------------------------------------------------
Confidence 88888887655544432
Q ss_pred ceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567 752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824 (911)
Q Consensus 752 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 824 (911)
++.|+.|++++|++.+.+| .+..+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus 135 ---------l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 135 ---------LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---------CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ---------CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 2467778888887444666 68889999999999999986 44 68889999999999998864
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.3e-16 Score=159.15 Aligned_cols=132 Identities=27% Similarity=0.359 Sum_probs=92.0
Q ss_pred CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCCh-hhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567 621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN-QICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR 699 (911)
Q Consensus 621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~ 699 (911)
+.+++++|+++ .+|..+.. +|++|++++|++++..+. .+..+++|++|+|++|++++..|..|..+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------- 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence 45666666664 45554433 666777777776654443 36667777777777777776656554432
Q ss_pred cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567 700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779 (911)
Q Consensus 700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 779 (911)
++|+.|+|++|++++..|
T Consensus 78 --------------------------------------------------------------~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 78 --------------------------------------------------------------SHIQELQLGENKIKEISN 95 (192)
T ss_dssp --------------------------------------------------------------TTCCEEECCSCCCCEECS
T ss_pred --------------------------------------------------------------ccCCEEECCCCcCCccCH
Confidence 356667777777777777
Q ss_pred ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCC
Q 043567 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827 (911)
Q Consensus 780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip 827 (911)
..+..+++|++|+|++|++++.+|..++.+++|++|+|++|.+++..+
T Consensus 96 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777888888888888888888888888888888888888888887655
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.6e-16 Score=166.85 Aligned_cols=170 Identities=22% Similarity=0.323 Sum_probs=99.7
Q ss_pred ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEE
Q 043567 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLL 553 (911)
Q Consensus 474 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 553 (911)
+.++..++++.+.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~--------- 82 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LK--------- 82 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GT---------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hc---------
Confidence 344555555555554332 3444555555555555554 223 34445555555555555543222 44
Q ss_pred ccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCccccc
Q 043567 554 MSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV 633 (911)
Q Consensus 554 L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~ 633 (911)
.+++|+.|++++|++++..+.. . ++|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 83 ---------------~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 83 ---------------DLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp ---------------TCSSCCEEECCSSCCSCCTTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC
T ss_pred ---------------cCCCCCEEECCCCccCCcCccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC
Confidence 4444555555555444422211 2 5666666666666642 2 467777788888888877754
Q ss_pred CchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC
Q 043567 634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS 681 (911)
Q Consensus 634 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ 681 (911)
| .+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 577778888888888888755 5677778888888888877754
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.2e-16 Score=170.76 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=57.5
Q ss_pred cCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCc-
Q 043567 351 QFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLL- 429 (911)
Q Consensus 351 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~- 429 (911)
+++|+.+++++|+++ .+|...|.++++|+.+++.+| +. .|++..+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~-------------------------~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK-------------------------TIGQRVFSNCGRLAG 277 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC-------------------------EECTTTTTTCTTCCE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc-------------------------eehHHHhhCChhccE
Confidence 455666666655554 555555555555555555444 33 34444444455565
Q ss_pred EEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceee
Q 043567 430 YMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLG 481 (911)
Q Consensus 430 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~ 481 (911)
.+++.+ +++...+.+|.+|++|+.++++.|+++ .++...|.+|++|+.++
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 666655 455444556666666666666666665 55555566666666554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.2e-15 Score=146.74 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=45.1
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcc-ccccccccCCCCEEeccCCcCcccCC---CCCCCCCCCCe
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIP---PKLTELNFLSN 838 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~ 838 (911)
+|+.|++++|++++.+|..++.+++|++|+|++|++++. .+..++.+++|+.|++++|++++..+ ..+..++.|++
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 344455555555544555555555555555555555543 12455555555555555555554333 24555555556
Q ss_pred EeccCCcCe
Q 043567 839 FNVSYNNLS 847 (911)
Q Consensus 839 L~ls~N~l~ 847 (911)
|++++|.+.
T Consensus 152 L~l~~n~~~ 160 (168)
T 2ell_A 152 LDGYDREDQ 160 (168)
T ss_dssp ETTEETTSC
T ss_pred ecCCCCChh
Confidence 666555554
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=145.03 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=69.1
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
+|+.|||++|++++..|..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|+|++..+..+..++.|++|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 45566667777766666677788888888888888888777788888888888888888886666678888888888888
Q ss_pred CCcCeecC
Q 043567 843 YNNLSGLI 850 (911)
Q Consensus 843 ~N~l~g~i 850 (911)
+|++.+..
T Consensus 135 ~N~~~C~c 142 (193)
T 2wfh_A 135 ANPLYCDC 142 (193)
T ss_dssp SSCEECSG
T ss_pred CCCeecCC
Confidence 88887643
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=6.8e-15 Score=160.23 Aligned_cols=276 Identities=13% Similarity=0.093 Sum_probs=128.0
Q ss_pred CCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccc--cccchhhhcCCCCcEEeccCcccCCcccHHHHhc----
Q 043567 400 HDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFE--GNIASSIAEMKELRFLDLSKNNFSGELSAALLTS---- 473 (911)
Q Consensus 400 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~---- 473 (911)
+.++++|.++++--. .--..+...+++|+.|||++|++. ...+. .++.++.+.+..| .+|...|.+
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccc
Confidence 445666666653111 000111111456777777777665 11111 1122333444333 445555666
Q ss_pred ----ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcC----cccCCcCccC
Q 043567 474 ----CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML----SGHIPHWMGN 545 (911)
Q Consensus 474 ----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l----~~~~p~~l~~ 545 (911)
|++|+.+++.+ .++.....+|.+|++|+.+++.+|.++...+..|..+.++..+....+.. ...-...|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777777 66666666777777777777777777666666666666666665554221 1112233444
Q ss_pred cCCCc-EEEccCcccccccchhhc----cCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCC
Q 043567 546 LSYLE-VLLMSKNFFEGNIPVQLL----NHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSN 619 (911)
Q Consensus 546 l~~L~-~L~L~~n~l~~~~p~~l~----~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~ 619 (911)
+..|+ .+.+.... .++..+. ...++..+.+.++-......... .+++|+.+++++|+++..-+..|.+|++
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 44444 33332211 1111111 11222333332221110000000 2445555555555554333334555555
Q ss_pred CCEEeCCCCcccccCchhhhcCCCcc-EEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccc
Q 043567 620 LLTLDLRDNGFSGVIPHQINECSNLR-FLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI 689 (911)
Q Consensus 620 L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l 689 (911)
|+.+++.+| +...-+.+|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++..-+..|.++
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 555555554 4433344455555555 555544 4443334455555555555555555543333344443
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.4e-14 Score=142.40 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=73.1
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
.|+.|++++|++++..+..++.+++|++|+|++|++++..|..++.+++|++||+++|++++..+..+..++.|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 55667777777775555667888889999999999988777778888999999999999987666667888999999999
Q ss_pred CCcCeecCCC
Q 043567 843 YNNLSGLIPD 852 (911)
Q Consensus 843 ~N~l~g~iP~ 852 (911)
+|+++|..|.
T Consensus 133 ~N~~~~~~~~ 142 (177)
T 2o6r_A 133 TNPWDCSCPR 142 (177)
T ss_dssp SSCBCCCHHH
T ss_pred CCCeeccCcc
Confidence 9999887763
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.3e-15 Score=142.29 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=38.6
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcc-ccccccccCCCCEEeccCCcCcccCC---CCCCCCCCCCe
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIP---PKLTELNFLSN 838 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~ 838 (911)
.|+.|++++|++++.+|..++.+++|++|++++|++++. .|..++.+++|++||+++|++++..+ ..+..++.|++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 334444444444444444444455555555555555442 23445555555555555555554333 24444555555
Q ss_pred Eecc
Q 043567 839 FNVS 842 (911)
Q Consensus 839 L~ls 842 (911)
||++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 5544
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=2.6e-14 Score=142.28 Aligned_cols=129 Identities=24% Similarity=0.409 Sum_probs=101.5
Q ss_pred CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCcccc
Q 043567 621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRY 700 (911)
Q Consensus 621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~ 700 (911)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+..+++|+.|+|++|++++..|..|..
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 46777777776 5565543 47788888888887 67777888888888888888887655554443
Q ss_pred ccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCc
Q 043567 701 RLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPS 780 (911)
Q Consensus 701 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 780 (911)
++.|+.|+|++|++++..|.
T Consensus 77 ------------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 77 ------------------------------------------------------------MTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp ------------------------------------------------------------CTTCCEEECCSSCCCBCCTT
T ss_pred ------------------------------------------------------------CCCCCEEECCCCccCEeCHH
Confidence 23677788899998887788
Q ss_pred cccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567 781 EIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825 (911)
Q Consensus 781 ~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ 825 (911)
.|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+.+.
T Consensus 97 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 899999999999999999977777899999999999999998753
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.9e-14 Score=140.04 Aligned_cols=131 Identities=19% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCCcEEECcCCcCc-ccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEE
Q 043567 523 KKLVELRMSSNMLS-GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLY 600 (911)
Q Consensus 523 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~ 600 (911)
++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+ .+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555554 44444445555555555555554432 333444444444444444433333222 233333334
Q ss_pred cccCccccc-ccccccCCCCCCEEeCCCCcccccCc---hhhhcCCCccEEEccCCccc
Q 043567 601 LQKNSLSGP-IPIALFRSSNLLTLDLRDNGFSGVIP---HQINECSNLRFLLLRGNNLE 655 (911)
Q Consensus 601 Ls~n~l~~~-~p~~l~~~~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~ 655 (911)
+++|++++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 444433321 11344444445555555554443322 24444444444444444443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=3.6e-14 Score=139.36 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=90.4
Q ss_pred CCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR 699 (911)
Q Consensus 620 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~ 699 (911)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 345666666665 344333 246677777777776555555666777777777777766433332222
Q ss_pred cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567 700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779 (911)
Q Consensus 700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 779 (911)
++.|+.|++++|++++..+
T Consensus 75 -------------------------------------------------------------l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 75 -------------------------------------------------------------LTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCCCCT
T ss_pred -------------------------------------------------------------CCccCEEECCCCCccccCH
Confidence 2356677888888876666
Q ss_pred ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCC
Q 043567 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827 (911)
Q Consensus 780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip 827 (911)
..++.+++|++|+|++|++++..+..+..+++|+.|++++|.+++..|
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 667888888888888888887666667888888888888888887654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.1e-14 Score=136.65 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=78.0
Q ss_pred CCCcEEECcCCcCc-ccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEc
Q 043567 523 KKLVELRMSSNMLS-GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYL 601 (911)
Q Consensus 523 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L 601 (911)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+.. +++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-----------------------l~~L~~L~L 71 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-----------------------LNKLKKLEL 71 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-----------------------CTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-----------------------CCCCCEEEC
Confidence 45666666666665 55666566666666666666665533 33444 445555555
Q ss_pred ccCcccccccccccCCCCCCEEeCCCCccccc-CchhhhcCCCccEEEccCCcccccCC---hhhhcCCCCCeEEcC
Q 043567 602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV-IPHQINECSNLRFLLLRGNNLEGQIP---NQICQLTGLGMMDLS 674 (911)
Q Consensus 602 s~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ip---~~l~~l~~L~~L~Ls 674 (911)
++|.+++.+|..+..+++|++|++++|++++. .|..+..+++|++|++++|++++..+ ..+..+++|+.||++
T Consensus 72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555555555666677777777766652 23566677777777777777765544 456677777777665
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=4e-13 Score=149.43 Aligned_cols=264 Identities=11% Similarity=0.109 Sum_probs=146.6
Q ss_pred CCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCC
Q 043567 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKN 207 (911)
Q Consensus 128 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 207 (911)
+..++.+.+.++ ++.+.. .+|.++ +|+.+++..+ +......+|.++ +|+.+.+.. .+. .+....|.++++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~----~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPK----DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCTT-CCEECT----TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTT
T ss_pred cCCccEEEECCc-cCEehH----hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCccc
Confidence 345555555432 333332 344443 4666666554 444444455553 466666654 333 333455666666
Q ss_pred CCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeecc
Q 043567 208 LEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALF 287 (911)
Q Consensus 208 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 287 (911)
|+.+++++|.++ .++..+|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+.
T Consensus 182 L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 182 LKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp CCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred CCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence 666666666665 55555555 456666666533 55545556666666666666543 44334444555 566666663
Q ss_pred CCcCCCccChhhhcccccccEEEecCCCc----cccccccCcCCCCCceEEECCCCCCCCCChhhh-ccCCCCEEECCCC
Q 043567 288 DNNFEGTFPLSSLANHSKLEVLLLSTRNN----MLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHN 362 (911)
Q Consensus 288 ~n~l~~~~p~~~l~~l~~L~~L~L~~~~~----~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~-~~~~L~~L~Ls~n 362 (911)
+ .++ .++...|.+|++|+.+.+..+.. ...+....|..+.+|+.+.+. +.+..++...+ .+.+|+.+.+..+
T Consensus 257 ~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 N-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp T-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 2 233 44445666666666666654322 123555566666677777776 34666655443 4467777777554
Q ss_pred CCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCC-CCccEEEccCCc
Q 043567 363 DLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKH-DFLHHLDISSNN 412 (911)
Q Consensus 363 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~ls~n~ 412 (911)
++ .+....|.++ +|+.+.+.+|.........+..+ ..++.|.+..+.
T Consensus 334 -l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 334 -VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 43 5666666677 77777777776655443344444 366777776654
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.4e-16 Score=158.09 Aligned_cols=155 Identities=21% Similarity=0.294 Sum_probs=106.9
Q ss_pred ccCCCCCCEEeCCCCcccccCch------hhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccc
Q 043567 614 LFRSSNLLTLDLRDNGFSGVIPH------QINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT 687 (911)
Q Consensus 614 l~~~~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 687 (911)
+.....++.++++.+.++|.+|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 33445566666666666666655 77777788888888887775 66 7777778888888877776 4454332
Q ss_pred cccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEE
Q 043567 688 NITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGL 767 (911)
Q Consensus 688 ~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 767 (911)
. ++.|+.|
T Consensus 91 ~------------------------------------------------------------------------~~~L~~L 98 (198)
T 1ds9_A 91 V------------------------------------------------------------------------ADTLEEL 98 (198)
T ss_dssp H------------------------------------------------------------------------HHHCSEE
T ss_pred c------------------------------------------------------------------------CCcCCEE
Confidence 2 1356678
Q ss_pred EcccCcccccCCccccCCCCCCEEECCCCcCCcccc-ccccccCCCCEEeccCCcCcccCCCC----------CCCCCCC
Q 043567 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIP-ESFSNLKMIESLDLSHNRLSGQIPPK----------LTELNFL 836 (911)
Q Consensus 768 dLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~l~g~ip~~----------l~~l~~L 836 (911)
++++|++++ +| .++.+++|++|++++|++++..+ ..++.+++|++|++++|++++.+|.. +..++.|
T Consensus 99 ~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 99 WISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp EEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred ECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 888888875 45 57777888888888888875332 46777888888888888888776654 6677777
Q ss_pred CeEeccCCcCe
Q 043567 837 SNFNVSYNNLS 847 (911)
Q Consensus 837 ~~L~ls~N~l~ 847 (911)
++|| +|.++
T Consensus 177 ~~Ld--~~~i~ 185 (198)
T 1ds9_A 177 KKLD--GMPVD 185 (198)
T ss_dssp SEEC--CGGGT
T ss_pred EEEC--CcccC
Confidence 7776 45544
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=1.2e-12 Score=146.37 Aligned_cols=315 Identities=13% Similarity=0.056 Sum_probs=153.1
Q ss_pred ccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccc
Q 043567 196 SRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSII 275 (911)
Q Consensus 196 ~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 275 (911)
.+...+|.++++|+.+.+..+ ++ .|+..+|.+|++|+.+++..+ ++.+...+|.++++|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 355567888888888888744 55 677777888888888888654 55555567777777777666543 333334455
Q ss_pred cCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCC
Q 043567 276 SNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK 355 (911)
Q Consensus 276 ~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~ 355 (911)
.++..++........ .+....|.++++|+.+.+.. ....+....|..+ .+|+
T Consensus 137 ~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c-----------------------~~L~ 188 (394)
T 4fs7_A 137 KGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPD--SMETLHNGLFSGC-----------------------GKLK 188 (394)
T ss_dssp TTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTC-----------------------TTCC
T ss_pred ecccccccccCcccc---ccchhhhcccCCCcEEecCC--ccceeccccccCC-----------------------CCce
Confidence 555433332222211 22223455555555555532 1222333333333 3444
Q ss_pred EEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEccc
Q 043567 356 YLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN 435 (911)
Q Consensus 356 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~ 435 (911)
.+++..+ ++ .++...+.++..|+.+.+..+...-. ........|+.+.+.... + .+....+..+..++.+.+..
T Consensus 189 ~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~--~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 189 SIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLG--DFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp BCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEEC--TTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECC
T ss_pred EEEcCCC-ce-EeCchhhccccccceeecCCCceEee--hhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCC
Confidence 4444433 22 34444444555555555444322100 011123344555443321 1 22223333355555555554
Q ss_pred CccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccc
Q 043567 436 NHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI 515 (911)
Q Consensus 436 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 515 (911)
+... .....+..+..++.+....+. ++...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++..-
T Consensus 263 ~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 263 NKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp TTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred Ccce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence 4222 333345555555555544432 23333445555555555432 33333444555555555555432 33333
Q ss_pred cccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccC
Q 043567 516 EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK 556 (911)
Q Consensus 516 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 556 (911)
...|.++.+|+.+++..+ ++..-..+|.+|++|+.+++..
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 444555555555555443 3333334455555555555543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=1.6e-12 Score=145.30 Aligned_cols=334 Identities=11% Similarity=0.121 Sum_probs=188.4
Q ss_pred cccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCcc
Q 043567 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSR 197 (911)
Q Consensus 118 ~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 197 (911)
..+...+|..+.+|+.+++..+ ++.+.. .+|.++.+|+.+++..+ +.......|.++++|+.+.+..+- . .+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~-~i 131 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGE----FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-K-SI 131 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-C-EE
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcch----hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-e-ee
Confidence 4455567888888888888643 555444 57777888888887654 544455667777777776665442 2 23
Q ss_pred ChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccC
Q 043567 198 TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN 277 (911)
Q Consensus 198 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 277 (911)
....|.++..++........ .+...+|.+|++|+.+.+.++ +..+...+|.++.+|+.+++..+ ++......|.+
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred cceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence 33455555544333332222 334455777777777777544 33334456666777777766654 44344455666
Q ss_pred CCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEE
Q 043567 278 LTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL 357 (911)
Q Consensus 278 l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L 357 (911)
+..|+.+.+..+... +. ........|+.+.+.. ....+....+.... .++.+
T Consensus 207 ~~~L~~i~~~~~~~~--i~-~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~-----------------------~l~~~ 258 (394)
T 4fs7_A 207 CILLENMEFPNSLYY--LG-DFALSKTGVKNIIIPD--SFTELGKSVFYGCT-----------------------DLESI 258 (394)
T ss_dssp CTTCCBCCCCTTCCE--EC-TTTTTTCCCCEEEECT--TCCEECSSTTTTCS-----------------------SCCEE
T ss_pred ccccceeecCCCceE--ee-hhhcccCCCceEEECC--Cceecccccccccc-----------------------cceeE
Confidence 666666666554321 11 1222334455554431 12223333344444 44555
Q ss_pred ECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCc
Q 043567 358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH 437 (911)
Q Consensus 358 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~ 437 (911)
.+..+.. .+....+..+..++.+......+. ...+..+.+|+.+.+..+ ++ .|++..+..+.+|+.+++.++
T Consensus 259 ~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 259 SIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-
T ss_pred EcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-
Confidence 5444322 233334445555555555444322 123445666666666544 33 455555555777777777643
Q ss_pred cccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567 438 FEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504 (911)
Q Consensus 438 l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 504 (911)
++..-..+|.+|++|+.+++..+ ++ .|+...|.+|.+|+.+++..+- . .+..+|.++++|+.+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 55445567778888888888766 54 6777777788888888876542 1 223457777777654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=1.4e-12 Score=144.91 Aligned_cols=268 Identities=11% Similarity=0.095 Sum_probs=158.0
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccE
Q 043567 229 ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEV 308 (911)
Q Consensus 229 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~ 308 (911)
.+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+..
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-------------------- 166 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-------------------- 166 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--------------------
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--------------------
Confidence 345566666643 3444444555554 5666666544 443333444442 344444432
Q ss_pred EEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCc
Q 043567 309 LLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNS 388 (911)
Q Consensus 309 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 388 (911)
.+..+....|..+.+|+.+++.+|.+..++...+.+.+|+.+.+..+ ++ .++...|.++++|+.+.+..+
T Consensus 167 -------~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~- 236 (401)
T 4fdw_A 167 -------TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN- 236 (401)
T ss_dssp -------TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-
T ss_pred -------CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-
Confidence 33344445566666777777777788888877777788888888754 44 677777777777777777653
Q ss_pred cccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccC----C
Q 043567 389 FTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS----G 464 (911)
Q Consensus 389 l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----g 464 (911)
++ .++...+.. .+|+.+.+. +.++.....+|.+|++|+.+++.+|.+. .
T Consensus 237 l~-------------------------~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 237 VS-------------------------TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp CC-------------------------EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred cc-------------------------Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 22 222222222 345555552 2333333445555666666665555432 1
Q ss_pred cccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCcc
Q 043567 465 ELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG 544 (911)
Q Consensus 465 ~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 544 (911)
.++...|.+|++|+.+.+. +.+......+|.++++|+.+.+..+ ++..-...|..+ +|+.+++.+|.+....+..|.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 3555556666677777666 3355555566777777777777544 554555667777 788888877777655556666
Q ss_pred CcC-CCcEEEccCcccc
Q 043567 545 NLS-YLEVLLMSKNFFE 560 (911)
Q Consensus 545 ~l~-~L~~L~L~~n~l~ 560 (911)
.++ .++.|.+..+.+.
T Consensus 367 ~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 367 GFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSCTTCCEEEECGGGHH
T ss_pred CCCCCccEEEeCHHHHH
Confidence 663 6777777766543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=4.8e-15 Score=148.54 Aligned_cols=131 Identities=21% Similarity=0.282 Sum_probs=77.8
Q ss_pred CccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCC
Q 043567 542 WMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNL 620 (911)
Q Consensus 542 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L 620 (911)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+ .+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44455555555555555543 44 45555555555555555553 23333 44566666666666664 34 46666677
Q ss_pred CEEeCCCCcccccCc-hhhhcCCCccEEEccCCcccccCChh----------hhcCCCCCeEEcCCCcCC
Q 043567 621 LTLDLRDNGFSGVIP-HQINECSNLRFLLLRGNNLEGQIPNQ----------ICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 621 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~ 679 (911)
+.|++++|++++..+ ..+..+++|++|++++|++.+.+|.. +..+++|+.|| +|.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777764322 35677777777777777777665542 67778888776 55554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=7.1e-13 Score=128.90 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=84.1
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
.++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|+.+++|++|||++|+|++..|..+..++.|++|+|+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 56789999999998889999999999999999999998888888999999999999999998877789999999999999
Q ss_pred CCcCeecCCCC
Q 043567 843 YNNLSGLIPDK 853 (911)
Q Consensus 843 ~N~l~g~iP~~ 853 (911)
+|++++..+..
T Consensus 111 ~N~~~c~c~~l 121 (170)
T 3g39_A 111 NNPWDCACSDI 121 (170)
T ss_dssp SSCBCTTBGGG
T ss_pred CCCCCCCchhH
Confidence 99999876643
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=9.7e-13 Score=128.92 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=35.2
Q ss_pred cCCCCCCEEeCCCCcccccCch--hhhcCCCccEEEccCCcccccCChh----hhcCCCCCeEEcCCCcCC
Q 043567 615 FRSSNLLTLDLRDNGFSGVIPH--QINECSNLRFLLLRGNNLEGQIPNQ----ICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 615 ~~~~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~ 679 (911)
..+++|++|++++|+++ .+|. .+..+++|++|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 44555555555555553 3343 4555666666666666665 34443 566666666666666543
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=1.1e-12 Score=128.62 Aligned_cols=133 Identities=19% Similarity=0.159 Sum_probs=111.3
Q ss_pred cccCCCCCcEEECcCCcCcccCCcCccCcC-CCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-cccc
Q 043567 518 GLLKSKKLVELRMSSNMLSGHIPHWMGNLS-YLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISS 595 (911)
Q Consensus 518 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~ 595 (911)
.+..+.+|++|++++|+++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ .+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567889999999999998 4554 44444 999999999999864 678889999999999999998777765 8899
Q ss_pred ccEEEcccCcccccccc--cccCCCCCCEEeCCCCcccccCchh----hhcCCCccEEEccCCcccc
Q 043567 596 VEHLYLQKNSLSGPIPI--ALFRSSNLLTLDLRDNGFSGVIPHQ----INECSNLRFLLLRGNNLEG 656 (911)
Q Consensus 596 L~~L~Ls~n~l~~~~p~--~l~~~~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~ 656 (911)
|++|++++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|.+..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999995 5665 7888999999999999998 45664 8899999999999998763
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.1e-12 Score=125.92 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=82.0
Q ss_pred cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS 842 (911)
Q Consensus 763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 842 (911)
.|+.|+|++|+|++.+|..|+.+++|++|+|++|+|++..+..|+++++|++|||++|+|++..|..+..++.|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 57789999999999889999999999999999999998777778999999999999999997776679999999999999
Q ss_pred CCcCeecCCC
Q 043567 843 YNNLSGLIPD 852 (911)
Q Consensus 843 ~N~l~g~iP~ 852 (911)
+|++....+.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999876543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.2e-11 Score=120.66 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=92.2
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCC
Q 043567 765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN 844 (911)
Q Consensus 765 ~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 844 (911)
+.+|+++|+++ .+|..+. +.|++|+|++|+|++.+|..|+++++|+.|||++|+|++..+..|..++.|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56999999997 8898775 89999999999999999999999999999999999999876667899999999999999
Q ss_pred cCeecCCC-CCCCCccCccccCCCCCCCCC
Q 043567 845 NLSGLIPD-KGQFATFDESSYRGNLHLCGP 873 (911)
Q Consensus 845 ~l~g~iP~-~~~~~~~~~~~~~gn~~lcg~ 873 (911)
++++..|. -..+..+....+.+|+.-|..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99987664 345666666778899887754
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=2.9e-10 Score=126.76 Aligned_cols=311 Identities=10% Similarity=0.093 Sum_probs=148.3
Q ss_pred ccChhhhcCCC-CCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCc---CCCCCCcccCCCCCCcEEEccCCcCCccC
Q 043567 196 SRTKQGLSKLK-NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNN---IEDHLPNCLNNMTRLKVLDISFNQLSGSF 271 (911)
Q Consensus 196 ~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 271 (911)
.+...+|.+++ .|+.+.+..+ ++ .|...+|.+|++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 34456677774 5888888754 54 6777778888888888887653 55545566777777776666543 34344
Q ss_pred cccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhcc
Q 043567 272 PSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQ 351 (911)
Q Consensus 272 p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~ 351 (911)
...|..+.+|+.+.+..+. . .++...+..+..|+.+.+. . .+..+....+..
T Consensus 130 ~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~-------------------------~-~~~~I~~~aF~~ 181 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLP-------------------------D-SVTAIEERAFTG 181 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECC-------------------------T-TCCEECTTTTTT
T ss_pred hhhhhhhccccccccccee-e-eecccceeccccccccccc-------------------------c-eeeEeccccccc
Confidence 4556666666666665432 1 3443455555555555543 2 133333333344
Q ss_pred CCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEE
Q 043567 352 FDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYM 431 (911)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L 431 (911)
.+|+.+.+..+.. .+....+.++..++.........................-... .+ ....+..+
T Consensus 182 ~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~ 247 (394)
T 4gt6_A 182 TALTQIHIPAKVT--RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR-------YP-----SQREDPAF 247 (394)
T ss_dssp CCCSEEEECTTCC--EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE-------CC-----TTCCCSEE
T ss_pred cceeEEEECCccc--ccccchhhhccccceecccccccccccceeecccccccccccc-------cc-----cccccceE
Confidence 4555555544322 2333334455555555444333221100000000000000000 00 01122233
Q ss_pred EcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccc
Q 043567 432 DMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKF 511 (911)
Q Consensus 432 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 511 (911)
.+.+ .++..-..+|..+..|+.+.+..+.. .+....+..+.+|+.+.+. +.++......|.++.+|+.+++..+ +
T Consensus 248 ~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 248 KIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp ECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EcCC-cceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-c
Confidence 3321 12222334555666666666654432 3444444555555555553 2333333344555555555555433 3
Q ss_pred cccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCc
Q 043567 512 SGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557 (911)
Q Consensus 512 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 557 (911)
+......|..+.+|+.+.+..+ ++..-..+|.+|++|+.+++.++
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 3233344555555555555432 33223344555555555555544
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=1.7e-11 Score=119.10 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=83.9
Q ss_pred cEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCc
Q 043567 574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653 (911)
Q Consensus 574 ~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 653 (911)
+.+++++|.++..+... .+.|++|++++|++++..|..+.++++|++|+|++|++++..|..|..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45555555555432222 2567778888888887778888888999999999999997777778899999999999999
Q ss_pred ccccCChhhhcCCCCCeEEcCCCcCCCCCC
Q 043567 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683 (911)
Q Consensus 654 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip 683 (911)
+++..+..+..+++|+.|+|++|+++...+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 997777778899999999999999886543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=6.6e-10 Score=123.91 Aligned_cols=321 Identities=12% Similarity=0.127 Sum_probs=173.3
Q ss_pred ccccccccccCCC-CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCC---CCccchhhhcCCCCCCEEEcCCcc
Q 043567 117 VLSLNVSLFHPFE-ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY---FDDSIFLYLNALTSLTTLILRENN 192 (911)
Q Consensus 117 ~~~~~~s~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~Ls~n~ 192 (911)
|..+...+|..++ .|+.+.+..+ ++.+.. .+|.++.+|+.+.++.|. +......+|.++.+|+.+.+..+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~----~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGS----NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECT----TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhH----HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 4456666788775 5888888754 555544 688889999998887653 55555677888888888777654
Q ss_pred cCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCc
Q 043567 193 IQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP 272 (911)
Q Consensus 193 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 272 (911)
+. .+....|..+.+|+.+.+..+. . .++..+|..+..|+.+.+..+ ++.+...+|.. .+|+.+.+..+- .....
T Consensus 125 ~~-~I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~ 198 (394)
T 4gt6_A 125 VT-EIDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGT 198 (394)
T ss_dssp CS-EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECT
T ss_pred cc-eehhhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-ccccc
Confidence 22 4555678888888888887543 2 566667888888888888654 44444455544 568888876543 33445
Q ss_pred ccccCCCCCCeeeccCCcCCCccChhhhcc-------------cccccEEEecCCCccccccccCcCCCCCceEEECCCC
Q 043567 273 SIISNLTSLEYLALFDNNFEGTFPLSSLAN-------------HSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNC 339 (911)
Q Consensus 273 ~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~-------------l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n 339 (911)
.+|..+.+++......+... .+....+.. ...+..+.+ .+....+...+|..+..|+.+.+...
T Consensus 199 ~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--p~~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKI--PNGVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEEC--CTTEEEECTTTTTTCSSCCEEECCTT
T ss_pred chhhhccccceecccccccc-cccceeecccccccccccccccccccceEEc--CCcceEcccceeeecccccEEecccc
Confidence 66777777777766554432 111001111 111111111 11222233334444444555544433
Q ss_pred CCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCCh
Q 043567 340 SLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQ 419 (911)
Q Consensus 340 ~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~ 419 (911)
.. .+....+.+++.|+.+.+.. .++......+..+.+|+.+++..+ ++ .|.+
T Consensus 276 ~~-------------------------~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~ 327 (394)
T 4gt6_A 276 VV-------------------------SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILD 327 (394)
T ss_dssp CC-------------------------EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred cc-------------------------eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence 22 23333444444455444432 222222233344555555555433 22 3444
Q ss_pred hHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCc
Q 043567 420 DMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDN 485 (911)
Q Consensus 420 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n 485 (911)
..+..+.+|+.+.+..+ ++..-..+|.+|++|+.+++.++... + ..+..+.+|+.+.+..+
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H--HTCBCCCCC--------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h--hhhhccCCCCEEEeCCC
Confidence 44445666666666543 44344456666666666666655432 1 12234555666655444
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=2.3e-12 Score=141.84 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=70.2
Q ss_pred ccCCcEEEcccCccccccchhhhcC-----CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCC----
Q 043567 425 LQKLLYMDMSNNHFEGNIASSIAEM-----KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGY---- 495 (911)
Q Consensus 425 l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---- 495 (911)
++.|++|++++|.++......+... ++|++|+|++|.++......+...+++|+.|+|++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4566666666666664444433332 5677777777766543333344445556666666665544322222
Q ss_pred -CCCCCCCEEEccCcccccc----ccccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccc
Q 043567 496 -MNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFE 560 (911)
Q Consensus 496 -~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 560 (911)
...++|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|+.|+|++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1235566666666666532 223334455566666666655432 1233344445555555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=8.4e-11 Score=128.86 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=78.8
Q ss_pred ccccEEEccc-CcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEe
Q 043567 762 DYMVGLDLSC-NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFN 840 (911)
Q Consensus 762 ~~L~~LdLs~-N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 840 (911)
++|+.|+|++ |+|++..|..|++|++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |++|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3678899996 999988889999999999999999999999999999999999999999999977666677666 99999
Q ss_pred ccCCcCeec
Q 043567 841 VSYNNLSGL 849 (911)
Q Consensus 841 ls~N~l~g~ 849 (911)
|++|++...
T Consensus 110 l~~N~~~c~ 118 (347)
T 2ifg_A 110 LSGNPLHCS 118 (347)
T ss_dssp CCSSCCCCC
T ss_pred eeCCCccCC
Confidence 999999864
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=4e-12 Score=139.90 Aligned_cols=143 Identities=20% Similarity=0.180 Sum_probs=79.6
Q ss_pred CCCcEEECcCCcCcccCCcCc-cCcCCCcEEEccCcccccccchhh-----ccCCCCcEEEccCccccccc----Cccc-
Q 043567 523 KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQL-----LNHRRLQLFSVSENYLSGFM----TTSF- 591 (911)
Q Consensus 523 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l-----~~~~~L~~L~ls~n~l~~~~----~~~~- 591 (911)
++|++|+|++|.++......+ ..+++|+.|+|++|.++......+ ...++|+.|++++|.++... +..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555543221111 223455666666665553332222 12455666666666654321 1111
Q ss_pred ccccccEEEcccCccccc----ccccccCCCCCCEEeCCCCccccc----CchhhhcCCCccEEEccCCcccccCChhhh
Q 043567 592 NISSVEHLYLQKNSLSGP----IPIALFRSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQIPNQIC 663 (911)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~ 663 (911)
..++|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|++|+|++|.|+..-...+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 355666666666666542 345566667788888888877642 344455667888888888887765555554
Q ss_pred cC
Q 043567 664 QL 665 (911)
Q Consensus 664 ~l 665 (911)
.+
T Consensus 261 ~~ 262 (372)
T 3un9_A 261 DL 262 (372)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.2e-10 Score=127.51 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=90.6
Q ss_pred EEEcccC-cccccCCccccCCCCCCEEECCC-CcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccC
Q 043567 766 GLDLSCN-KLTGEIPSEIGELQEIPVLNMSH-NFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843 (911)
Q Consensus 766 ~LdLs~N-~l~g~ip~~i~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 843 (911)
.++++++ +++ .||. |+.+++|+.|+|++ |+|++..|..|++|++|+.|||++|+|++.+|..|.+|+.|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4789998 898 6898 99999999999996 999998889999999999999999999999999999999999999999
Q ss_pred CcCeecCCCCCCCCccCccccCCCCCCCC
Q 043567 844 NNLSGLIPDKGQFATFDESSYRGNLHLCG 872 (911)
Q Consensus 844 N~l~g~iP~~~~~~~~~~~~~~gn~~lcg 872 (911)
|+|++..|.......+....+.+|+.-|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCC
Confidence 99998766543222355566778887763
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.94 E-value=4.8e-08 Score=108.16 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=45.0
Q ss_pred hccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCE
Q 043567 424 ILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY 503 (911)
Q Consensus 424 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 503 (911)
.+.+|+.+.+..+ +.......|..|++|+.+.+.++.++ .|+...|.+|.+|+.+.+..+ ++.....+|.++.+|+.
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 3444555544332 22223334455555555555555444 455445555555555555432 33333445566666666
Q ss_pred EEccCccccccccccccCC
Q 043567 504 LYLENNKFSGKIEEGLLKS 522 (911)
Q Consensus 504 L~L~~n~l~~~~p~~l~~l 522 (911)
+.+..+ ++..-..+|.++
T Consensus 338 i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 338 ISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCTT-CCEECTTTTTTS
T ss_pred EEECCc-cCEEchhHhhCC
Confidence 665433 332333344443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=9.4e-08 Score=105.82 Aligned_cols=318 Identities=11% Similarity=0.050 Sum_probs=182.9
Q ss_pred hhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCC
Q 043567 175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNM 254 (911)
Q Consensus 175 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 254 (911)
+++....+|+.+.+... ++ .++..+|.++.+|+.+++..+ ++ .|+..+|.++ +|+.+.+..+ ++.+...+|..+
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC
Confidence 45666778888888654 33 455677888888888888754 55 6777778887 5777776543 444444556554
Q ss_pred CCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEE
Q 043567 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL 334 (911)
Q Consensus 255 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 334 (911)
+|+.+.+..+ +.......|.++ +|+.+.+..+ ++ .+....+.++..++...+...+............
T Consensus 114 -~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 181 (379)
T 4h09_A 114 -DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN------- 181 (379)
T ss_dssp -CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE-------
T ss_pred -CcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecc-------
Confidence 6888887654 332333344443 4555544433 22 2333445555666555554322211110000000
Q ss_pred ECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCC
Q 043567 335 RLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414 (911)
Q Consensus 335 ~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 414 (911)
....+.........+..+.+..... .+.. .....+..|+.+.+..+- .
T Consensus 182 -----~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~------------------------~~f~~~~~l~~i~~~~~~-~ 229 (379)
T 4h09_A 182 -----KNKTILESYPAAKTGTEFTIPSTVK--TVTA------------------------YGFSYGKNLKKITITSGV-T 229 (379)
T ss_dssp -----TTSSEEEECCTTCCCSEEECCTTCC--EECT------------------------TTTTTCSSCSEEECCTTC-C
T ss_pred -----cccceecccccccccccccccccee--EEee------------------------cccccccccceeeeccce-e
Confidence 0000000111111222222211110 1111 122344455555554331 1
Q ss_pred cCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCC
Q 043567 415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG 494 (911)
Q Consensus 415 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 494 (911)
.+....+..+..|+.+.+..+ ++..-...+.++.+|+.+.+..+ ++ .++...|..|.+|+.+.+.++.++.....+
T Consensus 230 -~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 230 -TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp -EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred -EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhh
Confidence 333444445777888888765 55455667888889999988654 43 677777888999999999888887777788
Q ss_pred CCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCC
Q 043567 495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSY 548 (911)
Q Consensus 495 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 548 (911)
|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++..
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 889999999999754 55455667888899998888654 55344556666543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=5e-09 Score=114.13 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=95.1
Q ss_pred cccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhc--cCCCCcEEEccC--ccccccc----
Q 043567 516 EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL--NHRRLQLFSVSE--NYLSGFM---- 587 (911)
Q Consensus 516 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~ls~--n~l~~~~---- 587 (911)
...+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......+. .+++|+.|+|+. |...+..
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 344556677888888776311 2333 33 67888888887777654444444 678888888753 2211110
Q ss_pred -Cccc---ccccccEEEcccCccccccccccc---CCCCCCEEeCCCCccccc----CchhhhcCCCccEEEccCCcccc
Q 043567 588 -TTSF---NISSVEHLYLQKNSLSGPIPIALF---RSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEG 656 (911)
Q Consensus 588 -~~~~---~~~~L~~L~Ls~n~l~~~~p~~l~---~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~ 656 (911)
...+ .+++|++|++.+|.+....+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 0111 367888888888877654444333 356788888888887753 33444566788888888887765
Q ss_pred cCChhhhc-CCCCCeEEcCCCc
Q 043567 657 QIPNQICQ-LTGLGMMDLSHNK 677 (911)
Q Consensus 657 ~ip~~l~~-l~~L~~L~Ls~N~ 677 (911)
..-..+.. + ...++++.++
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 44333433 2 3556777665
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=7.6e-10 Score=114.16 Aligned_cols=82 Identities=27% Similarity=0.282 Sum_probs=40.9
Q ss_pred cCCCCCCEEEcCCcccCCc--cChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCC-------
Q 043567 178 NALTSLTTLILRENNIQGS--RTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLP------- 248 (911)
Q Consensus 178 ~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p------- 248 (911)
.++++|++|+|++|++++. ++ ..+..+++|++|+|++|+|++.-....+..+ +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 3455555555555555541 22 2344555666666666665532111112222 56666666666655443
Q ss_pred cccCCCCCCcEEE
Q 043567 249 NCLNNMTRLKVLD 261 (911)
Q Consensus 249 ~~l~~l~~L~~L~ 261 (911)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1245566666665
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=6.5e-09 Score=113.23 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=101.5
Q ss_pred ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhh--cCCCCCeEEcCCC--cCCCCCCcc
Q 043567 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC--QLTGLGMMDLSHN--KFNGSIPSC 685 (911)
Q Consensus 610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~--~l~~L~~L~Ls~N--~l~g~ip~~ 685 (911)
++..+..+++|+.|+|++|.-. .++. + .+++|++|+|..|.+.......++ .+++|+.|+|+.+ ...|.. .
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~ 238 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--D 238 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--C
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--h
Confidence 3445566677888888776311 2333 3 367888888888877654444554 6788888888532 211110 0
Q ss_pred cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCcccc
Q 043567 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV 765 (911)
Q Consensus 686 ~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 765 (911)
+..+. ..+....++.|+
T Consensus 239 ~~~l~---------------------------------------------------------------~~l~~~~~p~Lr 255 (362)
T 2ra8_A 239 MNVFR---------------------------------------------------------------PLFSKDRFPNLK 255 (362)
T ss_dssp GGGTG---------------------------------------------------------------GGSCTTTCTTCC
T ss_pred HHHHH---------------------------------------------------------------HHHhcCCCCCcC
Confidence 00000 000112346788
Q ss_pred EEEcccCcccccCCcccc---CCCCCCEEECCCCcCCcc----ccccccccCCCCEEeccCCcCcccCCCCCCC-CCCCC
Q 043567 766 GLDLSCNKLTGEIPSEIG---ELQEIPVLNMSHNFLSES----IPESFSNLKMIESLDLSHNRLSGQIPPKLTE-LNFLS 837 (911)
Q Consensus 766 ~LdLs~N~l~g~ip~~i~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~ 837 (911)
.|+|++|.+.+..+..+. .++.|++|+|+.|.+++. ++..+.++++|+.|||++|.++...-..+.. + ..
T Consensus 256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~ 333 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PM 333 (362)
T ss_dssp EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CS
T ss_pred EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CC
Confidence 899988888765544443 477889999999988774 5555667788999999988887543333332 2 34
Q ss_pred eEeccCCc
Q 043567 838 NFNVSYNN 845 (911)
Q Consensus 838 ~L~ls~N~ 845 (911)
.++++.|+
T Consensus 334 ~~~~~~~~ 341 (362)
T 2ra8_A 334 KIDVSDSQ 341 (362)
T ss_dssp EEECCSBC
T ss_pred EEEecCCc
Confidence 57777776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=9.9e-08 Score=93.65 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=37.7
Q ss_pred ccCCCCCCEEeCCCC-CCCcccCcccccccCCCCCCcEEeCCCCCCCcc----chhhhcCCCCCCEEEcCCcccC
Q 043567 125 FHPFEELQSLDLSNN-SFEGVYENQAYDTLGSLKRLKILNLGYNYFDDS----IFLYLNALTSLTTLILRENNIQ 194 (911)
Q Consensus 125 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~ 194 (911)
+...+.|++|+|++| .+.......+...+...++|++|+|++|.+.+. +...+...+.|++|+|++|.|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 455666777777776 665443323334455556666666666666532 2233334455555555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=3.9e-07 Score=93.92 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=40.5
Q ss_pred cCCCCCCEEECCCCcCCc--cccccccccCCCCEEeccCCcCcccCCCCCCCCC--CCCeEeccCCcCeecCC
Q 043567 783 GELQEIPVLNMSHNFLSE--SIPESFSNLKMIESLDLSHNRLSGQIPPKLTELN--FLSNFNVSYNNLSGLIP 851 (911)
Q Consensus 783 ~~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~L~ls~N~l~g~iP 851 (911)
.+++.|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|++|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 445666666666666666 4455556666666666666666654 2233333 66666666666666655
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=5.3e-07 Score=88.36 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=54.0
Q ss_pred ccccEEEcccCccccc----ccccccCCCCCCEEeCCCCccccc----CchhhhcCCCccEEEc--cCCccccc----CC
Q 043567 594 SSVEHLYLQKNSLSGP----IPIALFRSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLL--RGNNLEGQ----IP 659 (911)
Q Consensus 594 ~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~~----ip 659 (911)
++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...++|++|+| ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 4455555555555432 233444556777777777777643 3455666777888888 77777644 33
Q ss_pred hhhhcCCCCCeEEcCCCcCC
Q 043567 660 NQICQLTGLGMMDLSHNKFN 679 (911)
Q Consensus 660 ~~l~~l~~L~~L~Ls~N~l~ 679 (911)
..+...++|+.|+|++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 44555678888888888764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=1.6e-05 Score=75.83 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=45.8
Q ss_pred CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCC-CCccchhhhcCC----CCCCEEEcCCcc-cCCccChhhhc
Q 043567 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY-FDDSIFLYLNAL----TSLTTLILRENN-IQGSRTKQGLS 203 (911)
Q Consensus 130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~l~ 203 (911)
.|++||+++|.++...- ..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. +++..- ..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred eEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 56777777776554322 456666777777777664 565555555543 356666666653 442211 2344
Q ss_pred CCCCCCEEeCCCC
Q 043567 204 KLKNLEALDLSSN 216 (911)
Q Consensus 204 ~l~~L~~L~Ls~n 216 (911)
++++|++|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 5555555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=5.6e-05 Score=72.03 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=16.1
Q ss_pred CCcEEEccCCcCCccCcccccCCCCCCeeeccCC
Q 043567 256 RLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289 (911)
Q Consensus 256 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 289 (911)
+|+.||++++.++...-..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4444444444444433334444555555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.19 E-value=0.00018 Score=69.85 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=49.7
Q ss_pred ccCCCCCCEEeCCCC-CCCcccCcccccccCCCCCCcEEeCCCCCCCccc----hhhhcCCCCCCEEEcCCcccCCccC-
Q 043567 125 FHPFEELQSLDLSNN-SFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSI----FLYLNALTSLTTLILRENNIQGSRT- 198 (911)
Q Consensus 125 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~- 198 (911)
+..-+.|++|+|++| .+.......+..++..-+.|++|+|++|.+.+.. ...+..-+.|++|+|+.|.|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567777777774 6654433334456666677777777777775432 3334455666666666666642211
Q ss_pred --hhhhcCCCCCCEEeCCC
Q 043567 199 --KQGLSKLKNLEALDLSS 215 (911)
Q Consensus 199 --~~~l~~l~~L~~L~Ls~ 215 (911)
...+..-+.|++|+|++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 12233344455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.64 E-value=0.001 Score=64.53 Aligned_cols=61 Identities=18% Similarity=0.085 Sum_probs=28.8
Q ss_pred CCCCCEEeccCCcCCCC----CCcccCCCCCCcEEEccCC---cCCcc----CcccccCCCCCCeeeccCCc
Q 043567 230 LKNLFVLNLEKNNIEDH----LPNCLNNMTRLKVLDISFN---QLSGS----FPSIISNLTSLEYLALFDNN 290 (911)
Q Consensus 230 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n---~l~~~----~p~~l~~l~~L~~L~L~~n~ 290 (911)
-+.|++|+|++|.|... +.+++..-+.|+.|+|++| .+... +...+..-+.|+.|+++.|.
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34455555555555432 2223333445666666543 22221 22334445666666666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0033 Score=56.93 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=37.0
Q ss_pred EEEcccCccc-ccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCc
Q 043567 766 GLDLSCNKLT-GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823 (911)
Q Consensus 766 ~LdLs~N~l~-g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 823 (911)
.+|.++++++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4777777775 45665433 35777777777777655666667777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.49 E-value=0.0039 Score=56.47 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=49.2
Q ss_pred CEEECCCCcCC-ccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567 789 PVLNMSHNFLS-ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG 848 (911)
Q Consensus 789 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 848 (911)
..+|-+++.++ ..+|..+. ++|+.|||++|+|+..-+..|..++.|++|+|++|++.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47999999997 46786554 369999999999997777778999999999999998864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.80 E-value=17 Score=30.41 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=21.5
Q ss_pred ccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEcc
Q 043567 221 SLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDIS 263 (911)
Q Consensus 221 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 263 (911)
.|...+|.+|++|+.+.+-.+ ++.+...+|.+|.+|+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344445555555555555443 333344455555555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.79 E-value=22 Score=29.70 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCC
Q 043567 114 GDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGY 166 (911)
Q Consensus 114 ~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~ 166 (911)
|..|..+...+|..+..|+.+.+..+ ++.+.. .+|.+|.+|+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~----~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYD----GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCT----TSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcH----HHHhccCCccEEEEcC
Confidence 45566777778888888888877654 333333 5666666666666654
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.79 E-value=23 Score=19.59 Aligned_cols=9 Identities=33% Similarity=1.431 Sum_probs=7.1
Q ss_pred CCcccccee
Q 043567 77 DCCNWKGVR 85 (911)
Q Consensus 77 ~~C~w~gv~ 85 (911)
.-|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 469999975
Done!