BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043572
(997 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WUH2|TGFA1_HUMAN Transforming growth factor-beta receptor-associated protein 1
OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1
Length = 860
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 223/970 (22%), Positives = 383/970 (39%), Gaps = 158/970 (16%)
Query: 32 LSISPISDCQVLIYIGTQSGSL--ILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89
++I + C +Y+GT + LL P A T Q+H+ F K
Sbjct: 25 VNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGPATFTATKQLQRHLGFKK------- 77
Query: 90 PVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNL 149
PV + + ++L+L CD + L + L +P+ +KG + A
Sbjct: 78 PVNELRAASALNRLLVL-CDNSISLVNMLNLEPVPSGARIKGAATFA------------- 123
Query: 150 LENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIE 209
L N VS + C V + + +R + +
Sbjct: 124 LNENPVSG------------------------------DPFCV--EVCIISVKRRTIQMF 151
Query: 210 LVNGSFV-ILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPP 268
LV V I+KE+ + + + + Y + + TG S +F PP
Sbjct: 152 LVYEDRVQIVKEVSTAEQPLAVAVDGHFLCLALTTQYIIHNYSTGVSQDLFPYCSEERPP 211
Query: 269 MLKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELY 328
++K + +++ +L +G+F G + + ++ YV+ L + ++
Sbjct: 212 IVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVSFPYVIALDDEFITVH 271
Query: 329 HKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRK 388
Q + F EG I D E G++ +VAT V +P E+QI+DLL
Sbjct: 272 SMLDQQQKQTLPFK-EGH---ILQDFE---GRV-IVATSKGVYILVPLPLEKQIQDLLAS 323
Query: 389 KDFKEAISLAE--ELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSE--TMQP 444
+ +EA+ LA+ E + M + Q GF+ L F EA + F + +
Sbjct: 324 RRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSGQLDVREL 383
Query: 445 SEVFPFIMRDPNRWSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVD 504
++PF LL + + HPP D+ N L T D
Sbjct: 384 ISLYPF---------LLPTSSSFTRSHPPLHEYADL--NQL---------------TQGD 417
Query: 505 DGFLSNPPSRAELLELAIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHD-ME 563
E + R + YL R E+ KE +DT L+ LY + HD +
Sbjct: 418 Q----------EKMAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEAD--HDSLL 465
Query: 564 NLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPA 623
+L +EN C++ + L++ L LY + A+ +W N +G +D +
Sbjct: 466 DLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQLWV----NIVNGDVQD-S 520
Query: 624 VENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTS--- 680
+DL + D ++ DE+L+ + W+ + + V+V T
Sbjct: 521 TRSDLYEYIVDFLT--------------YCLDEELVWAYADWVLQKSEEVGVQVFTKRPL 566
Query: 681 -EKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFE 739
E++ N +PD +I + K + L +YL+ L+ D+ ++HT A+ + +
Sbjct: 567 DEQQKNSFNPDDIINCL-KKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQRA 625
Query: 740 EESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWL 799
SG A T+ Q +L+ LQ SDLY +L+ ++G+ L +
Sbjct: 626 SASGKGAEATE------------------TQAKLRRLLQKSDLYRVHFLLERLQGAGLPM 667
Query: 800 EKAILYRKLGQETLVLQILALKLEDSEAAEQYC--AEIGRPDAYMQ-----LLDMYLDSQ 852
E AIL+ KLG+ L IL +L+D AAE YC GR + Q LL +YL +
Sbjct: 668 ESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLLAIYLHAG 727
Query: 853 DGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIV 912
+ AAV LL+ H D QVL+ L +QL ++ +R +H R Q+
Sbjct: 728 PTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHARRTMQVA 787
Query: 913 HNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCY--R 970
L+R+ ++ +++ + +Q++D+ LC C +F YP+ +V C R
Sbjct: 788 LGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVHTHCAASR 847
Query: 971 RQGESTSITG 980
S+S G
Sbjct: 848 HTNPSSSSPG 857
>sp|A4IG72|TGFA1_DANRE Transforming growth factor-beta receptor-associated protein 1
homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1
Length = 863
Score = 149 bits (377), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 209/825 (25%), Positives = 343/825 (41%), Gaps = 112/825 (13%)
Query: 177 IKANGVKVKEEEQHCRGDN----------VFAVIIGKRLVLIELVNGSFV-ILKEIQCMD 225
+ G K+K C +N + V+ +R V I V+ V +LKE+ +
Sbjct: 109 VPTGGAKLKGVTAFCINENPVTGDAFCVEMAVVLARRRAVQICTVHEDRVQMLKEVTTPE 168
Query: 226 GVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDN 285
+ +I + Y + + TG S +F P++K + +E+ +L
Sbjct: 169 QPCALSLDGYNICLALSTQYMILNYSTGASQDLFPYDCEERKPIVKRIGREEFLLAAPGG 228
Query: 286 VGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEG 345
+G+F +A G + + ++ A YVV L G + ++ Q ++F
Sbjct: 229 LGMFANAEGISQRAPVSWSENVIAAAVCFPYVVALDEGFVTVHSMLDQQLKQTLSFRD-- 286
Query: 346 GGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEG 405
GQ + E GK+ VVA+ V +P E QI+DLL +EA++L E +
Sbjct: 287 -GQLLQDFE----GKV-VVASSKAVYMLVPLPLERQIQDLLASHRVEEALTLTEA--AQR 338
Query: 406 EMAKEMLSFVHAQI----GFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLL 461
+ KE +H +I GF+ L F EA +HF + +V I P LL
Sbjct: 339 NIPKEKYQILHRRILQQAGFIQFGQLQFLEAKEHFRKGQL----DVRELISLYP----LL 390
Query: 462 VP-RNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLEL 520
+P + + HPP D+ N L T D E ++
Sbjct: 391 LPASSSFTRCHPPLHEFADL--NHL---------------TQGDQ----------EKVQR 423
Query: 521 AIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETL 580
R + YL R ++ E VDT L+ LY A + +L SEN+C++ +
Sbjct: 424 FKRFLISYLHEVRSSDIANGFHEDVDTALLKLY-AETSHESLLDLLASENACLLADSAPW 482
Query: 581 LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGRE 640
L++ L LY G + AL +W + +G +D + DL + D +S
Sbjct: 483 LEKHHKYYALGLLYHYNGQDAAALQMWVKIV----NGDLQD-STRPDLFEYVVDFLSF-- 535
Query: 641 VAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLT----SEKRINQLSPDKVIAAI 696
S+ DL+ +H W + + V++ T SE+R QL+ D VI +
Sbjct: 536 ------------CSNLDLVWRHADWALQKDQKIGVQIFTKRPTSEERRGQLNADDVITYL 583
Query: 697 DSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRS 756
K + L YL+ L+ ++ ++HT A+ A+ + S S+ Q+ R
Sbjct: 584 -QKHSQALLLYLEHLVLEKKLQKEKYHTHLAVLYAEKVLGLISRPSTSE---EQLSAAR- 638
Query: 757 SGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWL-EKAILYRKLGQETLVL 815
++LQ L+ S+LY + +L I+ SEL L E+A L+ KL + L
Sbjct: 639 --------------QKLQRLLKESNLYRVQLLLGKIQDSELLLLERATLHGKLEEHDKAL 684
Query: 816 QILALKLEDSEAAEQYCAEIG-------RPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHN 868
+L +L+DS AAE+YC+ R + + QLL +YLD AAV LL+
Sbjct: 685 HVLVHQLKDSSAAEEYCSWASASQDSSYRQNLFHQLLSVYLDPDVPGGAQTVAAVDLLNR 744
Query: 869 HGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARL 928
H E D ++VL+ L D L L + +RA +H Q+ L+RA ++ RL
Sbjct: 745 HAEVFDAVRVLKLLPEDWSLPLLRPFLCGAMRATVHARCTSQVALGLARAQNLQLLHDRL 804
Query: 929 EERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG 973
+ R V ++++ C CH A P T V C ++
Sbjct: 805 KYRGGPVLVSEKKGCQLCHNTFSEPDCACLPGGTPVHINCVAKKA 849
>sp|Q3UR70|TGFA1_MOUSE Transforming growth factor-beta receptor-associated protein 1
OS=Mus musculus GN=Tgfbrap1 PE=2 SV=1
Length = 860
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 173/740 (23%), Positives = 306/740 (41%), Gaps = 100/740 (13%)
Query: 245 YSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFR 304
Y + + TG S +F PP++K + +++ +L +G+F G + +
Sbjct: 188 YIILNYSTGLSQDLFPYCSEEKPPIVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWS 247
Query: 305 KSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVV 364
++ YV+ L + ++ Q + F EG I D E G++ +V
Sbjct: 248 ENVIGAAVCFPYVIALDDEFITVHSMLDQQQKQTLPFK-EGH---ILQDFE---GRV-IV 299
Query: 365 ATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAE--ELECEGEMAKEMLSFVHAQIGFL 422
AT V +P E+QI+DLL + +EA+ LA+ E + M + Q GF+
Sbjct: 300 ATSKGVYILVPLPLEKQIQDLLANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFI 359
Query: 423 LLFDLHFEEAVDHFLHSE--TMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPVPVEDV 480
L F EA + F S+ + ++PF LL + + HPP D+
Sbjct: 360 QFAQLQFLEAKELFRSSQLDVRELISLYPF---------LLPTSSSFTRSHPPLHEYADL 410
Query: 481 VDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTIL 540
N L T D E + R + YL R E+
Sbjct: 411 --NQL---------------TQGDQ----------EKMAKCKRFLMSYLNEIRSTEVANG 443
Query: 541 VKEGVDTLLMYLYRALNRVHD-MENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGM 599
KE +DT L+ LY + HD + +L +EN C++ + L++ L LY
Sbjct: 444 YKEDIDTALLKLYAEAD--HDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNKQ 501
Query: 600 SSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLI 659
+ A+ +W N +G +D + +DL + D ++ D++L+
Sbjct: 502 DASAVQLWV----NIVNGDIQD-STRSDLYEYIVDFLT--------------YCLDQELV 542
Query: 660 LQHLGWIADINAVLAVKVLTS----EKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQ 715
H W+ + + V++ T E++ +PD +I+++ K + L +YL+ L+ D+
Sbjct: 543 WTHADWLLQKSEEIGVQIFTKRPLDEQQQTSFNPDNIISSL-KKYPKALVKYLEHLVIDR 601
Query: 716 DSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQI 775
++HT A+ + + G T+ Q +L+
Sbjct: 602 RLQKEEYHTHLAILYLEEVLRQRVSTGGKDVEATE------------------TQAKLRR 643
Query: 776 FLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC--- 832
LQ SDLY + + ++G+ L +E AIL+ KLG+ L IL ++ D AAE YC
Sbjct: 644 LLQKSDLYRVHLLKEKVQGAGLPMESAILHGKLGEHEKALHILVHEMGDFSAAEDYCLWS 703
Query: 833 ----AEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPL 888
R + LL MYL + + + AAV LL++H D QVL+ L +
Sbjct: 704 SEGQGAACRQRLFHTLLAMYLRAGPSAQDLTVAAVDLLNHHAREFDVTQVLQLLPDTWSV 763
Query: 889 QLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHA 948
QL ++ +R +H R Q+ L+++ ++ +++ + V++++ LC C
Sbjct: 764 QLLCPFLMGAMRDSIHARRTTQVALGLAKSENLIYMYDKMKLKGNAVRLSERELCQLCQN 823
Query: 949 RLGTKLFAMYPDDTIVCYKC 968
G +F YP+ +V C
Sbjct: 824 PFGEPVFVRYPNGGLVHTHC 843
>sp|A7MB11|TGFA1_BOVIN Transforming growth factor-beta receptor-associated protein 1
OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1
Length = 859
Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 205/867 (23%), Positives = 354/867 (40%), Gaps = 117/867 (13%)
Query: 124 KKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183
+ LGF K +S +R + + S L+ + SL + + L+ SG + G
Sbjct: 71 RHLGFKKAVS----ELRAASALSRLLVLCDGCISLVHMLS------LEPVPSGARIKGAT 120
Query: 184 VKE-EEQHCRGD----NVFAVIIGKRLVLIELVNGSFV-ILKEIQCMDGVKTMVWLNDSI 237
E GD V + + +R + + LV V I++E+ + + +
Sbjct: 121 AFALNENPVSGDPFCVEVCIISVKRRTIQVFLVYEDRVQIVREVSTPEQPLAVAVDGHFL 180
Query: 238 IVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPV 297
+ Y + + TG + +F P++K + +++ +L +G+F G +
Sbjct: 181 CLALTTQYIILNYSTGAAQDLFPFCSEERRPIVKRIGRQEFLLAGPGGLGMFATVAG--I 238
Query: 298 GGSLVFRKSPDAVGELSM--YVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEE 355
R S + +G YVV L + ++ Q + F EG I D E
Sbjct: 239 SQRAPVRWSENVIGAAVCFPYVVALDDEFITVHSMLDQQQKQTLPFK-EGH---ILQDFE 294
Query: 356 CGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAE--ELECEGEMAKEMLS 413
G++ +VAT V +P E++I+DLL +EA+ LA+ E + M
Sbjct: 295 ---GRV-IVATSKGVYILVPLPLEKRIQDLLASHRVEEALVLAKGARRNIPKEKFQVMYR 350
Query: 414 FVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLVP-RNRYWGLHP 472
+ Q GF+ L F +A + F S + E+ + LL+P + + HP
Sbjct: 351 RILLQAGFIQFAQLQFLKAKELF-RSGQLDVRELISL-------YPLLLPTSSSFTRSHP 402
Query: 473 PPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVS 532
P D+ N L T D ++ R + YL
Sbjct: 403 PLHEFADL--NQL---------------TQGDQDKVAK----------CKRFLMSYLNEV 435
Query: 533 RKKELTILVKEGVDTLLMYLYRALNRVHD-MENLAPSENSCIVEELETLLDESGHLRTLA 591
R E+ KE +DT L+ LY + HD + +L +EN C++ + L++ L
Sbjct: 436 RSTEVANGYKEDIDTALLKLYAEAD--HDSLLDLLVTENFCLLPDSAAWLEKHKKYFALG 493
Query: 592 FLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILE 651
LY + A+ +W + +G +D + +DL + D L
Sbjct: 494 LLYHYNHQDAAAVQLWVSIV----NGDIQD-STRSDLYEYIVD--------------FLT 534
Query: 652 ESSDEDLILQHLGWIADINAVLAVKVLTS---EKRINQLSPDKVIAAIDSKKVEILQRYL 708
S+D DL+ +H W+ + + V+V T +++ + +PD +I+ + K + L +YL
Sbjct: 535 YSTDPDLVWRHADWVLQRSQEVGVQVFTKRPLDEQQSGFNPDDIISCL-KKYPQALVKYL 593
Query: 709 QWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCP 768
+ L+ ++ ++HT A+ E ++ + ++ ET
Sbjct: 594 EHLVTERRLQKEEYHTHLAVLYLD---EVLQQRPCTPDKDAEVTET-------------- 636
Query: 769 VQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAA 828
Q +L+ LQ SDLY ++D G+ L LE AIL+ KL Q L IL +L D AA
Sbjct: 637 -QAKLRRLLQESDLYRVHFLMDRTRGAGLPLESAILHGKLEQHEEALHILVHELADFPAA 695
Query: 829 EQYC--AEIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLET 881
E YC GR Y Q LL +YL AAV LL+ H D QVL+
Sbjct: 696 EDYCLWRSEGRDPPYRQRLFHLLLAVYLGPGPAAPARTVAAVDLLNRHAVEFDAAQVLQL 755
Query: 882 LSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDES 941
L +QL ++ +R +H R Q+ L+R+ ++ + +++ + V+++DE
Sbjct: 756 LPGTWSVQLLRPFLMGAMRDSIHARRTTQVAVGLARSENLIYKYDKMKLKGSSVRLSDEK 815
Query: 942 LCDSCHARLGTKLFAMYPDDTIVCYKC 968
LC C +F YP+ +V C
Sbjct: 816 LCQMCQNPFLEPVFVRYPNGGLVHTHC 842
>sp|Q96JC1|VPS39_HUMAN Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2
Length = 886
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 172/774 (22%), Positives = 304/774 (39%), Gaps = 91/774 (11%)
Query: 225 DGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD-VSCPPMLKLLSKEQKVLLLV 283
D K+M W +SI VG Y L V G+ + P P++ L+ + KV +
Sbjct: 165 DVPKSMAWCENSICVGFKRDYYLIR-VDGKGSIKELFPTGKQLEPLVAPLA-DGKVAVGQ 222
Query: 284 DNVGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFG 342
D++ V ++ G +L + P A+ Y++ + +E+ + + VQ++
Sbjct: 223 DDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQ 282
Query: 343 GEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELE 402
+ I + G ++ VA+ V VP QI+ LL+ K F+ A+ LAE +
Sbjct: 283 R---PRFITS----GGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKD 335
Query: 403 CEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHF--LHSETMQPSEVFPFIMRDPNRWSL 460
++ + + F L F+E++ F L ++ ++P ++ R L
Sbjct: 336 DSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQL 395
Query: 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLEL 520
P +P PV ++ +A+ + +++ + ++D + S + L+E
Sbjct: 396 QYP-------NPLPVLSGAELEKAHLALIDYLTQKRSQLVKKLNDS--DHQSSTSPLME- 445
Query: 521 AIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETL 580
I S+KK L I +DT L+ Y N L N C +EE E +
Sbjct: 446 GTPTIK-----SKKKLLQI-----IDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHV 495
Query: 581 LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGRE 640
L ++ L LY KG+ KAL + L N L G + +
Sbjct: 496 LKKAHKYSELIILYEKKGLHEKALQV-----------LVDQSKKANSPLKGHERTVQYLQ 544
Query: 641 VAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSE-KRINQLSPDKVIAAIDSK 699
TE + LI + W+ +K+ T + + L D+V+ +
Sbjct: 545 HLGTE---------NLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIEN 595
Query: 700 KVEILQRYLQWLIEDQDSDDTQFHT----LYA---LSLAKSAIEAFEEESGSKAFGTQMG 752
+ YL+ +I + ++FH LY L K + +F +G
Sbjct: 596 FKGLAIPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSF--PAGKTPVPAGEE 653
Query: 753 ETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQET 812
E Y +++L +FL+ S YDP ++ L E+A+L ++G+
Sbjct: 654 EGELGEY----------RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHE 703
Query: 813 LVLQILALKLEDSEAAEQYCAEI------GRPDAYMQLLDMYLDSQDGK----------E 856
L I L+D+ AE+YC + G D Y+ LL MYL E
Sbjct: 704 QALFIYVHILKDTRMAEEYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLE 763
Query: 857 PM--FKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHN 914
P +AA+++L H LD + L L + + + ++L R Q++ N
Sbjct: 764 PKANLQAALQVLELHHSKLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKN 823
Query: 915 LSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKC 968
L A + + R+ + I +E +C C ++G FA YP+ +V Y C
Sbjct: 824 LLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFC 877
>sp|Q8R5L3|VPS39_MOUSE Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1
Length = 886
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 170/774 (21%), Positives = 303/774 (39%), Gaps = 91/774 (11%)
Query: 225 DGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD-VSCPPMLKLLSKEQKVLLLV 283
D K+M W +SI VG Y L V G+ + P P++ L+ + KV +
Sbjct: 165 DVPKSMAWCENSICVGFKRDYYLIR-VDGKGSIKELFPTGKQLEPLVAPLA-DGKVAVGQ 222
Query: 284 DNVGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFG 342
D++ V ++ G +L + P A+ Y+V + +E+ + + VQ++
Sbjct: 223 DDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLEPRLLVQSIELQ 282
Query: 343 GEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELE 402
+ I + G ++ VA+ V VP QI+ LL+ K F+ A+ LAE +
Sbjct: 283 R---PRFITS----GGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKD 335
Query: 403 CEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHF--LHSETMQPSEVFPFIMRDPNRWSL 460
++ + + F L F+E++ F L ++ ++P ++ R L
Sbjct: 336 DSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQL 395
Query: 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLEL 520
P +P P ++ +A+ + +++ + ++D + S + L+E
Sbjct: 396 QYP-------NPLPTLSGAELEKAHLALIDYLTQKRSQLVKKLNDS--DHQSSTSPLME- 445
Query: 521 AIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETL 580
I S+KK L I +DT L+ Y N L N C +EE E +
Sbjct: 446 GTPTIK-----SKKKLLQI-----IDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHV 495
Query: 581 LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGRE 640
L ++ L LY KG+ KAL + L N L G + +
Sbjct: 496 LKKAHKYSELIILYEKKGLHEKALQV-----------LVDQSKKANSPLKGHERTVQYLQ 544
Query: 641 VAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSE-KRINQLSPDKVIAAIDSK 699
TE + LI + W+ +K+ T + + L D+V+ +
Sbjct: 545 HLGTE---------NLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIEN 595
Query: 700 KVEILQRYLQWLIEDQDSDDTQFHT----LYA---LSLAKSAIEAFEEESGSKAFGTQMG 752
+ YL+ +I + +QFH LY SL K + + +G
Sbjct: 596 FKALAIPYLEHIIHVWEETGSQFHNCLIQLYCEKVQSLMKDYLLSL--PTGKSPVPAGEE 653
Query: 753 ETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQET 812
Y +++L +FL+ S YDP ++ L E+A+L ++G+
Sbjct: 654 GGELGEY----------RQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHE 703
Query: 813 LVLQILALKLEDSEAAEQYCAEI------GRPDAYMQLLDMYLDSQDGK----------E 856
L I L+D++ A++YC + G D Y+ LL MYL E
Sbjct: 704 QALFIYVHVLKDTKMAKEYCHKHYDQNKEGNKDVYLSLLRMYLSPPSIHCLGPIKLELLE 763
Query: 857 PM--FKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHN 914
P +AA+++L H LD + + L + + + ++L R Q++ N
Sbjct: 764 PQANLQAALQVLELHYSKLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKN 823
Query: 915 LSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKC 968
L A + + R+ + I +E +C C ++G FA YP+ +V Y C
Sbjct: 824 LLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFC 877
>sp|O13955|VAM6_SCHPO Vacuolar morphogenesis protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vam6 PE=3 SV=1
Length = 905
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 38/285 (13%)
Query: 698 SKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSS 757
S KV I+ YL+ L+ D +DT F T AL K +E E ++
Sbjct: 636 SYKVSII--YLEKLLLDNKFNDTVFPTRLALLYLKRILELEE----------------TT 677
Query: 758 GYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKA--ILYRKLGQETLVL 815
+ +F+ + E+L+ +L +S YD VL I + +L ILYR+L + L
Sbjct: 678 DFKNQEVFKQTI-EKLEDYLTNSKQYDANVVLQEINSQDEFLSTVSIILYRRLSRHQDAL 736
Query: 816 QILALKLEDSEAAEQYCAEIGRPDA-----YMQLLDMYLDSQDGKEPMFKAAVRLLHNHG 870
+ L D E A YC + D YM L ++ + + G + + + +
Sbjct: 737 DVYLKILNDWEGALSYCNSVYSIDGETEPYYMLLAEISKNYKSGSLNI----LDFITKYS 792
Query: 871 ESLDPLQVLETLSPDMPLQ----LASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLA 926
LD +V L ++ ++ L S ++ + Q ++ R D++ L
Sbjct: 793 SRLDLNRVFPLLPKNISMKSYHSLFSSQFRQLFEELSNKETQSKLYQ--KRLEDLNEELT 850
Query: 927 RLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971
++ RS V I E C CH RLG + +++PD ++V Y C ++
Sbjct: 851 KV--RSEKVVITREKTCLFCHKRLGKSVISIFPDGSVVHYGCAKK 893
>sp|Q54EH3|Y1510_DICDI GTPase-activating protein DDB_G0291510 OS=Dictyostelium discoideum
GN=DDB_G0291510 PE=4 SV=1
Length = 1031
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 190 HCRGDN--------VFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSII-VG 240
+ +GDN + V + K L+L E G FV +E+ MD +KT+ + +I VG
Sbjct: 710 YTKGDNEGQEEDITLLYVGLKKTLLLYEWNKGEFVKSRELPLMDNIKTLCAIAPGMICVG 769
Query: 241 TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGG- 299
+ L T ++ D S P +K LS + ++LL +N+G+FVD G
Sbjct: 770 IQKEFLLIDIFTQTIKELYKKSD-SEP--VKALSLDNEILLCFNNIGIFVDESGNKTRQF 826
Query: 300 SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAV 339
L + +P ++ + YV+ + G +E+ +G +Q++
Sbjct: 827 ELKWGSTPSSLALVPSYVLGISGPLIEVRTLLNGNIIQSL 866
>sp|B2UDW0|SYR_RALPJ Arginine--tRNA ligase OS=Ralstonia pickettii (strain 12J) GN=argS
PE=3 SV=1
Length = 596
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 568 SENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIW-RVLARNYSSG--LWKDPAV 624
+ + + L +LLD GH F Y G+ LA+ + AR Y G W + A
Sbjct: 143 GRQAALGDALASLLDWQGHKVHREFYYNDAGVQIHNLAVSVQARARGYKPGDANWPEAAY 202
Query: 625 ENDLL-DGCADVMSGREVAATEASKILEESSDEDL 658
D + D AD ++G+ V A++ + E E++
Sbjct: 203 NGDYIADIAADYLAGKTVRASDGEPVTGERDVENI 237
>sp|P27689|FMA3_DICNO Fimbrial protein OS=Dichelobacter nodosus GN=fimA PE=3 SV=1
Length = 161
Score = 35.4 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 180 NGVKVK-EEEQHCRGDNVFAVIIGKRLVLIELVNGSFV 216
NG KV+ Q GD + +I GK+LVL +LVNGSFV
Sbjct: 103 NGCKVEITYGQGTAGDKISKLITGKKLVLDQLVNGSFV 140
>sp|A8MT70|ZBBX_HUMAN Zinc finger B-box domain-containing protein 1 OS=Homo sapiens
GN=ZBBX PE=2 SV=3
Length = 800
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 16/88 (18%)
Query: 737 AFEEESGSKAFGTQMGETRSSGYG-----------KNSIFQCPVQERLQIFLQSSDLYDP 785
+F+EE+ +++F + + R+ + K+S+ +C VQ L+I+ + ++
Sbjct: 252 SFDEEASAQSFQEVLSQWRTGNHDDNKKQNLHAAVKDSLEECEVQTNLKIWREPLNIELK 311
Query: 786 EDVLDLIEGSELWLEKAILYRKLGQETL 813
ED+L +E +LWL+K +R+ QE L
Sbjct: 312 EDILSYME--KLWLKK---HRRTPQEQL 334
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 772 RLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQY 831
R+ ++ + YD D+ ++ ++L+ E +++K T +Q+L ++ + E A ++
Sbjct: 1040 RVMDYINRLENYDAPDIANIAISNQLYEEAFAIFKKFDVNTSAIQVLIDQVNNLERANEF 1099
Query: 832 CAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLA 891
P + QL L Q G + K A+ ++ ++ DP ++ + D+ ++
Sbjct: 1100 AERCNEPAVWSQLAKAQL--QQG---LVKEAI---DSYIKADDPSAYVDVV--DVASKVE 1149
Query: 892 S-DTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEE 930
S D ++R L+ R+ I L A RLA LEE
Sbjct: 1150 SWDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEE 1189
>sp|P17822|FMAB_DICNO Fimbrial protein OS=Dichelobacter nodosus GN=fimA PE=3 SV=1
Length = 160
Score = 35.0 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 180 NGVKVK-EEEQHCRGDNVFAVIIGKRLVLIELVNGSFV 216
NG KV+ Q GD + +I GK+LVL +LVNGSF+
Sbjct: 103 NGCKVEITYGQGTAGDKISKLITGKKLVLDQLVNGSFI 140
>sp|O59796|VPS3_SCHPO Vacuolar protein sorting-associated protein 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps3 PE=3 SV=2
Length = 910
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 195 NVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQ 254
+ + ++ L LI +++K ++T + + T N + L +T
Sbjct: 120 STYLIVTNTHLKLISFQKDGIILVKNELKYPNIQTARVNGHIVCLVTENSFELLDILTFD 179
Query: 255 SGVIFTLPDVSC-------PPMLKLLSKEQKVLLLV-----DNVGVFVDAHGQPVGGSLV 302
+ +F + PM+ L S E LL+ D +G+FVD+ G +L
Sbjct: 180 TTPLFPIIKYDSENNGLMYKPMIVLHSNE---FLLITGSPKDAIGLFVDSQGNVTRSTLT 236
Query: 303 FRKSPDAVGELSMYVVVLRGGKMEL 327
F P V S YV + +++
Sbjct: 237 FSFYPKHVFSTSHYVFAISSSSLQI 261
>sp|P11933|FMAG_DICNO Fimbrial protein OS=Dichelobacter nodosus GN=fimA PE=3 SV=1
Length = 162
Score = 33.5 bits (75), Expect = 9.0, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 180 NGVKVK-EEEQHCRGDNVFAVIIGKRLVLIELVNGSF 215
NG KVK E + GDN+ +I G+ LVL +LVNGS+
Sbjct: 104 NGCKVKIEYGKGTAGDNISPLIKGQMLVLNQLVNGSY 140
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 772 RLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQY 831
R+ ++ D YD D+ ++ +EL+ E ++RK T +Q+L + + + A ++
Sbjct: 1039 RVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEF 1098
Query: 832 CAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLA 891
P + QL L Q G M K A+ ++ ++ DP +E + A
Sbjct: 1099 AERCNEPAVWSQLAKAQL--QKG---MVKEAI---DSYIKADDPSSYMEVVQ-------A 1143
Query: 892 SDT------ILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEE-----RSRHVQINDE 940
++T +++ L+ R+ + L A+ RLA LEE + H+Q
Sbjct: 1144 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ---- 1199
Query: 941 SLCDSCH 947
+ D C+
Sbjct: 1200 QVGDRCY 1206
>sp|Q9USJ6|FMNR_SCHPO NAD(P)H-dependent FMN reductase C4B3.06c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4B3.06c PE=3 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 316 YVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPT 368
Y +L+ LYH+ +G + V++GG GGG C A+ + AG L + PT
Sbjct: 101 YPAILKNALDHLYHEWNGKPLLIVSYGGHGGGDC-ASQLKHVAGFLKMRVAPT 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,324,316
Number of Sequences: 539616
Number of extensions: 15054564
Number of successful extensions: 41841
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 41779
Number of HSP's gapped (non-prelim): 44
length of query: 997
length of database: 191,569,459
effective HSP length: 127
effective length of query: 870
effective length of database: 123,038,227
effective search space: 107043257490
effective search space used: 107043257490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)