Query 043572
Match_columns 997
No_of_seqs 266 out of 1114
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2063 Vacuolar assembly/sort 100.0 2E-101 4E-106 907.5 62.8 830 30-982 14-876 (877)
2 KOG2066 Vacuolar assembly/sort 100.0 1.2E-45 2.6E-50 416.2 52.0 715 32-972 40-821 (846)
3 KOG2114 Vacuolar assembly/sort 100.0 5.2E-41 1.1E-45 380.6 58.8 802 5-982 5-880 (933)
4 PF00780 CNH: CNH domain; Int 100.0 6.7E-34 1.4E-38 312.4 29.3 238 36-344 2-268 (275)
5 KOG2034 Vacuolar sorting prote 100.0 3.1E-32 6.6E-37 312.9 29.9 523 305-972 288-849 (911)
6 smart00036 CNH Domain found in 99.9 4E-25 8.6E-30 243.3 27.0 232 39-341 10-280 (302)
7 PF10367 Vps39_2: Vacuolar sor 99.9 1.4E-22 2.9E-27 189.4 12.4 109 863-971 1-109 (109)
8 COG5422 ROM1 RhoGEF, Guanine n 99.9 1.1E-21 2.4E-26 222.6 16.4 268 16-342 842-1136(1175)
9 PF10366 Vps39_1: Vacuolar sor 99.7 3.3E-18 7.1E-23 156.4 8.7 106 545-667 1-108 (108)
10 smart00299 CLH Clathrin heavy 99.6 5.8E-15 1.3E-19 144.4 14.7 132 684-851 5-138 (140)
11 KOG4305 RhoGEF GTPase [Signal 99.5 1.8E-14 3.9E-19 172.4 10.4 125 217-343 855-991 (1029)
12 PF00637 Clathrin: Region in C 99.4 1.4E-14 3E-19 142.4 -1.6 133 685-853 6-140 (143)
13 KOG0985 Vesicle coat protein c 99.4 1.1E-10 2.5E-15 135.8 26.8 303 522-907 1149-1463(1666)
14 KOG0985 Vesicle coat protein c 98.3 4E-05 8.7E-10 90.8 20.5 273 543-896 872-1157(1666)
15 KOG2114 Vacuolar assembly/sort 98.2 4.1E-05 8.8E-10 90.0 17.2 144 657-838 369-519 (933)
16 cd00200 WD40 WD40 domain, foun 98.1 0.0034 7.3E-08 67.4 30.7 236 31-340 9-258 (289)
17 PF05131 Pep3_Vps18: Pep3/Vps1 98.0 0.00012 2.6E-09 71.1 13.2 109 306-425 35-146 (147)
18 KOG0587 Traf2- and Nck-interac 97.9 3.7E-06 8.1E-11 99.4 2.6 245 31-335 640-905 (953)
19 KOG2079 Vacuolar assembly/sort 97.8 0.00091 2E-08 80.8 18.9 90 886-978 1079-1172(1206)
20 KOG0291 WD40-repeat-containing 97.7 0.018 4E-07 67.4 27.7 279 27-380 303-615 (893)
21 KOG0576 Mitogen-activated prot 97.7 0.0002 4.3E-09 82.7 10.9 147 193-340 617-787 (829)
22 KOG0276 Vesicle coat complex C 97.3 0.11 2.4E-06 59.9 25.3 91 33-139 99-193 (794)
23 KOG0294 WD40 repeat-containing 97.2 0.07 1.5E-06 56.7 21.8 227 29-332 41-282 (362)
24 KOG2066 Vacuolar assembly/sort 97.2 0.0065 1.4E-07 71.7 15.8 115 548-698 612-728 (846)
25 smart00299 CLH Clathrin heavy 97.1 0.0029 6.4E-08 61.6 9.9 84 522-609 23-107 (140)
26 KOG0976 Rho/Rac1-interacting s 97.1 0.00044 9.6E-09 80.1 4.5 120 211-332 1069-1194(1265)
27 PF00637 Clathrin: Region in C 97.0 0.00022 4.7E-09 69.8 1.2 69 543-611 42-110 (143)
28 KOG0294 WD40 repeat-containing 97.0 0.027 5.9E-07 59.7 15.7 165 16-252 66-238 (362)
29 KOG1274 WD40 repeat protein [G 97.0 0.017 3.7E-07 69.2 15.9 183 23-252 48-263 (933)
30 cd00200 WD40 WD40 domain, foun 96.8 0.5 1.1E-05 50.3 25.6 195 87-339 8-215 (289)
31 TIGR03866 PQQ_ABC_repeats PQQ- 96.8 0.84 1.8E-05 49.8 27.8 125 218-343 150-291 (300)
32 KOG1539 WD repeat protein [Gen 96.8 0.031 6.7E-07 66.3 16.2 179 32-283 451-635 (910)
33 PF04762 IKI3: IKI3 family; I 96.6 2.9 6.3E-05 53.6 33.5 82 586-698 814-897 (928)
34 KOG2041 WD40 repeat protein [G 96.2 3.8 8.2E-05 48.5 30.8 153 517-698 794-951 (1189)
35 KOG0291 WD40-repeat-containing 96.2 1.3 2.8E-05 52.7 23.9 239 31-343 350-624 (893)
36 TIGR03866 PQQ_ABC_repeats PQQ- 96.2 2.6 5.6E-05 45.9 29.5 134 202-341 94-247 (300)
37 KOG2315 Predicted translation 96.2 0.65 1.4E-05 53.3 21.0 210 107-379 143-395 (566)
38 KOG0647 mRNA export protein (c 95.9 0.58 1.3E-05 49.7 17.9 204 14-296 16-232 (347)
39 KOG0310 Conserved WD40 repeat- 95.9 0.28 6.1E-06 55.2 16.4 144 33-249 155-306 (487)
40 PF13639 zf-RING_2: Ring finge 95.9 0.003 6.5E-08 47.9 0.9 40 942-981 2-44 (44)
41 KOG1273 WD40 repeat protein [G 95.9 0.31 6.7E-06 51.9 15.7 236 37-343 31-292 (405)
42 KOG2055 WD40 repeat protein [G 95.9 1 2.2E-05 50.5 20.4 161 32-263 214-386 (514)
43 KOG1446 Histone H3 (Lys4) meth 95.7 3.2 7E-05 44.6 22.3 153 87-296 99-266 (311)
44 PTZ00421 coronin; Provisional 95.6 6.1 0.00013 47.0 27.3 83 30-122 74-160 (493)
45 KOG1407 WD40 repeat protein [F 95.5 2.4 5.2E-05 44.4 20.0 234 32-345 21-275 (313)
46 PTZ00420 coronin; Provisional 95.5 8.4 0.00018 46.5 28.3 130 201-334 146-296 (568)
47 KOG3621 WD40 repeat-containing 95.5 2.7 5.8E-05 49.9 22.6 289 30-394 34-371 (726)
48 COG2706 3-carboxymuconate cycl 95.3 5.9 0.00013 43.5 25.0 135 201-336 165-328 (346)
49 KOG0279 G protein beta subunit 95.2 1 2.2E-05 47.5 16.4 157 33-262 107-273 (315)
50 PTZ00420 coronin; Provisional 95.0 4.4 9.5E-05 48.8 23.7 82 31-121 74-159 (568)
51 KOG1036 Mitotic spindle checkp 95.0 1.3 2.8E-05 47.4 16.8 154 24-253 11-165 (323)
52 COG2706 3-carboxymuconate cycl 94.9 7.3 0.00016 42.8 23.2 138 203-340 64-234 (346)
53 KOG0299 U3 snoRNP-associated p 94.7 1.9 4.2E-05 48.4 17.8 252 32-344 143-427 (479)
54 PF12678 zf-rbx1: RING-H2 zinc 94.6 0.024 5.2E-07 48.2 2.5 42 940-981 19-73 (73)
55 smart00504 Ubox Modified RING 94.6 0.02 4.3E-07 47.1 1.9 48 941-990 2-52 (63)
56 KOG0296 Angio-associated migra 94.5 3.2 7E-05 45.4 18.4 79 32-127 149-229 (399)
57 KOG2048 WD40 repeat protein [G 94.4 8.5 0.00018 45.5 22.9 242 32-380 26-279 (691)
58 PF10282 Lactonase: Lactonase, 94.2 12 0.00026 42.3 25.0 138 201-338 164-331 (345)
59 KOG0266 WD40 repeat-containing 94.2 15 0.00033 43.3 26.6 199 88-341 159-374 (456)
60 PF10366 Vps39_1: Vacuolar sor 94.1 0.14 3E-06 47.2 6.5 54 770-824 14-67 (108)
61 KOG0976 Rho/Rac1-interacting s 94.0 0.073 1.6E-06 62.5 5.4 55 277-332 1050-1109(1265)
62 KOG1273 WD40 repeat protein [G 94.0 6.5 0.00014 42.3 19.0 189 92-375 27-224 (405)
63 KOG2445 Nuclear pore complex c 93.7 7.6 0.00016 41.8 19.0 206 32-295 60-308 (361)
64 KOG0266 WD40 repeat-containing 93.6 17 0.00038 42.8 24.9 237 31-342 159-420 (456)
65 KOG1274 WD40 repeat protein [G 93.6 19 0.0004 44.4 24.3 228 32-332 16-263 (933)
66 PF04053 Coatomer_WDAD: Coatom 93.6 19 0.0004 42.2 27.2 81 360-449 246-326 (443)
67 KOG0289 mRNA splicing factor [ 93.6 1.9 4.1E-05 48.1 14.9 133 32-236 348-487 (506)
68 KOG1941 Acetylcholine receptor 93.5 0.028 6.1E-07 60.8 1.0 52 940-991 365-422 (518)
69 PLN00181 protein SPA1-RELATED; 93.4 5.1 0.00011 51.0 21.3 73 32-121 533-609 (793)
70 KOG1539 WD repeat protein [Gen 93.3 3.5 7.6E-05 49.7 17.5 75 28-119 156-233 (910)
71 KOG0275 Conserved WD40 repeat- 93.2 3.4 7.3E-05 44.3 15.4 253 27-343 209-479 (508)
72 PRK11028 6-phosphogluconolacto 92.9 19 0.00041 40.3 25.9 139 202-340 147-317 (330)
73 PRK11028 6-phosphogluconolacto 92.8 14 0.0003 41.5 21.5 145 196-340 48-218 (330)
74 KOG0278 Serine/threonine kinas 92.5 2.3 4.9E-05 44.2 12.7 148 41-259 112-262 (334)
75 PF14446 Prok-RING_1: Prokaryo 92.5 0.07 1.5E-06 41.6 1.5 35 939-973 4-40 (54)
76 KOG1920 IkappaB kinase complex 92.3 14 0.0003 46.9 21.4 194 574-835 777-991 (1265)
77 KOG0315 G-protein beta subunit 92.2 17 0.00037 38.1 19.3 86 16-119 64-155 (311)
78 KOG0305 Anaphase promoting com 92.2 5.3 0.00011 46.6 16.9 210 14-295 240-463 (484)
79 KOG2055 WD40 repeat protein [G 91.9 14 0.00029 42.0 18.7 147 195-343 227-386 (514)
80 KOG0275 Conserved WD40 repeat- 91.7 2.3 4.9E-05 45.5 12.0 90 29-137 261-352 (508)
81 KOG0306 WD40-repeat-containing 91.6 18 0.00038 43.6 20.1 75 26-117 407-483 (888)
82 PF11768 DUF3312: Protein of u 91.6 34 0.00073 40.4 23.6 76 205-284 238-319 (545)
83 KOG0318 WD40 repeat stress pro 91.6 31 0.00068 39.9 24.4 229 30-331 146-434 (603)
84 KOG0646 WD40 repeat protein [G 91.6 4.3 9.3E-05 45.9 14.5 162 30-251 80-247 (476)
85 KOG1036 Mitotic spindle checkp 91.4 14 0.00031 39.7 17.5 73 29-119 52-125 (323)
86 KOG2048 WD40 repeat protein [G 91.0 23 0.00049 42.1 20.1 242 29-332 289-549 (691)
87 KOG0273 Beta-transducin family 90.9 34 0.00074 39.0 24.4 265 32-374 236-521 (524)
88 PF13923 zf-C3HC4_2: Zinc fing 90.7 0.14 3.1E-06 37.5 1.6 29 943-972 1-29 (39)
89 PF14727 PHTB1_N: PTHB1 N-term 90.5 39 0.00085 39.1 23.4 64 42-119 38-106 (418)
90 KOG0315 G-protein beta subunit 90.4 15 0.00032 38.5 16.0 72 32-119 125-198 (311)
91 cd00162 RING RING-finger (Real 90.3 0.078 1.7E-06 39.7 -0.1 39 942-981 1-42 (45)
92 KOG1446 Histone H3 (Lys4) meth 90.3 30 0.00065 37.5 27.2 238 30-342 13-273 (311)
93 KOG0647 mRNA export protein (c 90.2 22 0.00048 38.3 17.5 136 197-341 88-238 (347)
94 PF14763 HPS3_C: Hermansky-Pud 90.2 3.5 7.6E-05 44.3 11.7 128 770-900 208-348 (353)
95 PF13920 zf-C3HC4_3: Zinc fing 89.9 0.21 4.5E-06 39.0 2.0 41 939-981 1-44 (50)
96 KOG0772 Uncharacterized conser 89.8 41 0.00089 38.9 20.2 245 37-346 175-460 (641)
97 PLN00181 protein SPA1-RELATED; 89.8 68 0.0015 40.9 32.7 240 31-336 483-743 (793)
98 KOG3617 WD40 and TPR repeat-co 89.8 40 0.00087 41.2 20.9 189 574-842 816-1014(1416)
99 KOG4378 Nuclear protein COP1 [ 89.5 9.3 0.0002 43.6 14.9 153 32-257 122-285 (673)
100 PF14634 zf-RING_5: zinc-RING 89.4 0.13 2.9E-06 38.8 0.5 40 942-981 1-43 (44)
101 KOG0646 WD40 repeat protein [G 89.4 1.1 2.3E-05 50.5 7.6 118 16-139 201-329 (476)
102 PLN03081 pentatricopeptide (PP 89.3 69 0.0015 40.2 25.9 60 544-613 260-319 (697)
103 KOG2063 Vacuolar assembly/sort 89.3 1.5 3.2E-05 54.6 9.4 125 771-903 479-622 (877)
104 PF09943 DUF2175: Uncharacteri 89.2 0.11 2.4E-06 46.2 -0.1 31 941-972 3-34 (101)
105 KOG2111 Uncharacterized conser 89.0 33 0.00073 37.3 17.9 58 195-253 105-169 (346)
106 KOG1734 Predicted RING-contain 89.0 0.094 2E-06 54.2 -0.8 40 939-978 223-274 (328)
107 KOG0292 Vesicle coat complex C 88.9 69 0.0015 39.7 28.9 72 33-119 208-281 (1202)
108 PF08596 Lgl_C: Lethal giant l 88.7 3.5 7.7E-05 47.4 11.6 58 194-253 273-337 (395)
109 PF04641 Rtf2: Rtf2 RING-finge 88.0 0.28 6.1E-06 53.0 2.1 51 939-989 112-166 (260)
110 PF04053 Coatomer_WDAD: Coatom 88.0 10 0.00022 44.3 15.0 85 196-297 158-257 (443)
111 PF14559 TPR_19: Tetratricopep 87.8 1.1 2.3E-05 37.1 5.1 50 385-438 1-50 (68)
112 KOG0279 G protein beta subunit 87.7 43 0.00092 35.9 23.3 234 41-343 28-274 (315)
113 KOG1445 Tumor-specific antigen 87.5 3.6 7.9E-05 47.9 10.3 88 41-138 640-729 (1012)
114 KOG0650 WD40 repeat nucleolar 87.3 22 0.00049 41.6 16.4 52 87-139 399-451 (733)
115 KOG2879 Predicted E3 ubiquitin 87.2 0.36 7.7E-06 50.5 2.1 45 936-981 235-284 (298)
116 PHA02929 N1R/p28-like protein; 87.2 0.26 5.6E-06 51.8 1.1 44 938-981 172-223 (238)
117 KOG0306 WD40-repeat-containing 87.1 31 0.00066 41.7 17.7 126 203-335 394-542 (888)
118 COG5243 HRD1 HRD ubiquitin lig 86.5 1.1 2.4E-05 48.6 5.4 43 938-980 285-340 (491)
119 smart00184 RING Ring finger. E 86.0 0.21 4.6E-06 35.8 -0.2 28 943-972 1-28 (39)
120 PF13432 TPR_16: Tetratricopep 86.0 1.8 3.9E-05 35.4 5.5 54 381-438 3-56 (65)
121 KOG1407 WD40 repeat protein [F 85.9 23 0.0005 37.4 14.2 165 197-369 36-211 (313)
122 KOG0282 mRNA splicing factor [ 85.9 8.1 0.00018 43.9 11.8 77 30-123 298-377 (503)
123 COG5540 RING-finger-containing 85.7 0.36 7.8E-06 51.0 1.2 42 940-981 323-368 (374)
124 KOG0307 Vesicle coat complex C 85.3 9.4 0.0002 47.9 13.0 98 30-138 63-170 (1049)
125 KOG3617 WD40 and TPR repeat-co 85.0 61 0.0013 39.8 18.7 56 385-440 810-885 (1416)
126 KOG0640 mRNA cleavage stimulat 85.0 31 0.00067 37.3 14.8 73 32-119 217-292 (430)
127 COG4847 Uncharacterized protei 85.0 0.25 5.3E-06 42.7 -0.3 32 940-972 6-38 (103)
128 PF12341 DUF3639: Protein of u 84.9 1.6 3.5E-05 29.0 3.5 25 32-56 2-26 (27)
129 KOG0274 Cdc4 and related F-box 84.2 14 0.0003 44.4 13.7 153 30-255 330-486 (537)
130 KOG0650 WD40 repeat nucleolar 84.0 6.4 0.00014 45.9 10.1 57 195-253 579-639 (733)
131 KOG2110 Uncharacterized conser 83.8 23 0.00051 39.1 13.7 40 98-138 95-138 (391)
132 PF10282 Lactonase: Lactonase, 83.6 84 0.0018 35.5 20.2 171 203-376 13-222 (345)
133 KOG2106 Uncharacterized conser 83.2 97 0.0021 35.9 23.4 239 41-368 212-468 (626)
134 KOG2139 WD40 repeat protein [G 83.1 30 0.00066 38.2 14.1 132 99-284 109-257 (445)
135 TIGR02917 PEP_TPR_lipo putativ 83.0 1.5E+02 0.0031 37.8 28.4 53 382-438 540-592 (899)
136 TIGR03300 assembly_YfgL outer 82.9 93 0.002 35.5 26.8 128 232-374 239-377 (377)
137 KOG2076 RNA polymerase III tra 82.8 82 0.0018 39.2 19.1 150 573-732 154-328 (895)
138 smart00132 LIM Zinc-binding do 82.5 0.91 2E-05 32.7 1.9 30 942-971 1-30 (39)
139 KOG0283 WD40 repeat-containing 82.3 99 0.0021 37.9 19.4 173 195-377 382-579 (712)
140 KOG0278 Serine/threonine kinas 82.1 29 0.00062 36.4 12.9 90 15-124 124-219 (334)
141 KOG0319 WD40-repeat-containing 81.8 1.1E+02 0.0024 37.1 19.2 267 32-333 63-356 (775)
142 KOG0305 Anaphase promoting com 81.6 65 0.0014 37.8 17.3 81 23-122 209-292 (484)
143 PF02239 Cytochrom_D1: Cytochr 80.1 99 0.0022 35.4 18.3 230 39-341 46-312 (369)
144 TIGR02917 PEP_TPR_lipo putativ 79.7 1.8E+02 0.004 36.8 28.5 26 587-612 570-595 (899)
145 KOG0318 WD40 repeat stress pro 79.5 1.3E+02 0.0029 35.1 25.9 231 29-335 279-521 (603)
146 PF02239 Cytochrom_D1: Cytochr 79.4 1.2E+02 0.0027 34.6 20.2 144 196-341 50-212 (369)
147 KOG3039 Uncharacterized conser 79.2 1.2 2.6E-05 45.8 2.0 48 940-987 221-273 (303)
148 KOG0826 Predicted E3 ubiquitin 77.8 0.9 1.9E-05 48.8 0.7 44 939-983 299-345 (357)
149 KOG0319 WD40-repeat-containing 77.1 1.2E+02 0.0026 36.9 17.4 186 32-256 148-359 (775)
150 KOG0289 mRNA splicing factor [ 76.6 1.4E+02 0.0031 33.9 18.2 225 33-331 221-460 (506)
151 TIGR00599 rad18 DNA repair pro 76.1 0.95 2.1E-05 51.3 0.4 44 937-982 23-68 (397)
152 KOG0273 Beta-transducin family 76.1 85 0.0018 36.0 15.2 149 31-251 359-523 (524)
153 KOG4628 Predicted E3 ubiquitin 76.0 3.7 7.9E-05 45.5 4.8 40 942-981 231-274 (348)
154 KOG1445 Tumor-specific antigen 75.8 62 0.0013 38.4 14.4 171 195-377 641-845 (1012)
155 PF00412 LIM: LIM domain; Int 74.9 2.8 6.1E-05 33.5 2.8 28 943-970 1-28 (58)
156 PF05096 Glu_cyclase_2: Glutam 74.7 1.3E+02 0.0028 32.5 15.8 128 215-343 33-169 (264)
157 COG5110 RPN1 26S proteasome re 74.3 30 0.00066 40.2 11.4 38 802-840 248-285 (881)
158 PF00097 zf-C3HC4: Zinc finger 73.6 1.6 3.5E-05 32.2 1.0 29 943-972 1-29 (41)
159 PF14761 HPS3_N: Hermansky-Pud 73.4 91 0.002 32.4 13.7 57 195-251 147-214 (215)
160 KOG1538 Uncharacterized conser 73.4 63 0.0014 38.5 13.8 72 579-680 640-715 (1081)
161 PF12894 Apc4_WD40: Anaphase-p 73.3 6.6 0.00014 30.1 4.3 29 31-59 11-41 (47)
162 KOG2110 Uncharacterized conser 73.1 1.6E+02 0.0035 32.9 17.7 133 203-339 68-212 (391)
163 KOG3616 Selective LIM binding 72.8 2.1E+02 0.0046 34.8 17.9 37 573-609 1094-1130(1636)
164 KOG2932 E3 ubiquitin ligase in 72.8 1.5 3.2E-05 46.6 0.8 40 941-982 91-131 (389)
165 PF03178 CPSF_A: CPSF A subuni 72.8 36 0.00077 38.0 12.1 56 196-251 100-157 (321)
166 PF07035 Mic1: Colon cancer-as 72.6 65 0.0014 32.2 12.2 98 703-835 12-115 (167)
167 KOG0320 Predicted E3 ubiquitin 72.2 0.83 1.8E-05 44.9 -1.1 41 941-981 132-174 (187)
168 KOG0293 WD40 repeat-containing 72.0 1.3E+02 0.0028 34.0 15.2 141 195-339 237-392 (519)
169 PF10886 DUF2685: Protein of u 71.8 2.4 5.2E-05 33.1 1.5 33 941-974 2-35 (54)
170 TIGR00570 cdk7 CDK-activating 71.7 2.2 4.7E-05 46.5 1.8 46 940-985 3-55 (309)
171 KOG0649 WD40 repeat protein [G 71.7 1.4E+02 0.003 31.5 17.9 100 30-137 61-160 (325)
172 PF08662 eIF2A: Eukaryotic tra 71.5 1.3E+02 0.0027 30.9 14.8 67 274-343 69-145 (194)
173 KOG1587 Cytoplasmic dynein int 71.4 60 0.0013 39.1 13.7 83 32-124 348-435 (555)
174 PLN03218 maturation of RBCL 1; 71.3 3.4E+02 0.0073 35.8 27.2 58 544-613 580-643 (1060)
175 PF03178 CPSF_A: CPSF A subuni 70.8 23 0.00049 39.6 9.9 52 203-254 62-118 (321)
176 PLN03208 E3 ubiquitin-protein 70.5 2.1 4.5E-05 43.3 1.2 37 933-971 11-47 (193)
177 PF12861 zf-Apc11: Anaphase-pr 70.4 1.5 3.3E-05 37.9 0.2 47 937-983 18-81 (85)
178 KOG4328 WD40 protein [Function 69.9 1.1E+02 0.0023 35.1 14.2 66 41-123 291-358 (498)
179 KOG2321 WD40 repeat protein [G 69.6 1.5E+02 0.0033 35.0 15.5 99 195-295 241-347 (703)
180 KOG0771 Prolactin regulatory e 69.4 86 0.0019 35.4 13.3 73 33-123 148-220 (398)
181 PF07569 Hira: TUP1-like enhan 69.4 20 0.00043 37.7 8.4 86 29-118 10-95 (219)
182 PF10395 Utp8: Utp8 family; I 68.9 2.8E+02 0.0062 34.0 22.3 30 88-117 129-158 (670)
183 KOG1645 RING-finger-containing 68.9 1.5E+02 0.0032 33.5 14.8 62 41-120 248-309 (463)
184 PRK10747 putative protoheme IX 68.7 2.3E+02 0.0049 32.7 23.4 121 655-819 262-385 (398)
185 PF13570 PQQ_3: PQQ-like domai 68.5 7 0.00015 28.6 3.4 22 37-58 17-38 (40)
186 PF13414 TPR_11: TPR repeat; P 68.5 13 0.00029 30.4 5.6 60 381-444 9-69 (69)
187 KOG2321 WD40 repeat protein [G 68.4 2.4E+02 0.0051 33.5 16.7 110 223-334 132-261 (703)
188 PF13424 TPR_12: Tetratricopep 68.3 20 0.00043 30.3 6.8 57 383-439 13-72 (78)
189 TIGR02658 TTQ_MADH_Hv methylam 68.2 2.2E+02 0.0047 32.3 19.1 124 203-331 77-223 (352)
190 PF00130 C1_1: Phorbol esters/ 68.2 7.2 0.00016 30.5 3.7 37 937-973 8-47 (53)
191 PF04564 U-box: U-box domain; 67.6 3 6.5E-05 35.4 1.4 50 939-990 3-56 (73)
192 PF12895 Apc3: Anaphase-promot 66.7 11 0.00024 32.6 4.9 50 383-437 33-82 (84)
193 PTZ00421 coronin; Provisional 66.5 2.8E+02 0.0062 33.1 31.1 139 200-343 145-302 (493)
194 KOG0295 WD40 repeat-containing 66.4 1.7E+02 0.0038 32.6 14.5 34 87-122 107-142 (406)
195 KOG2106 Uncharacterized conser 66.1 36 0.00078 39.2 9.7 88 31-137 447-537 (626)
196 KOG0310 Conserved WD40 repeat- 66.0 2.6E+02 0.0056 32.4 17.8 186 33-291 114-306 (487)
197 KOG2005 26S proteasome regulat 66.0 90 0.002 37.5 13.1 36 802-838 246-281 (878)
198 KOG0283 WD40 repeat-containing 65.4 1.8E+02 0.0038 35.8 15.8 150 88-290 409-572 (712)
199 PF08596 Lgl_C: Lethal giant l 65.1 2.7E+02 0.0058 32.2 21.8 62 314-379 272-338 (395)
200 KOG0639 Transducin-like enhanc 65.1 19 0.00041 41.2 7.3 96 27-137 461-559 (705)
201 PRK11447 cellulose synthase su 64.3 4.8E+02 0.01 35.0 27.1 63 800-867 578-661 (1157)
202 PLN03077 Protein ECB2; Provisi 64.3 4.1E+02 0.0089 34.2 31.0 60 543-612 424-483 (857)
203 PF03107 C1_2: C1 domain; Int 64.2 7.4 0.00016 26.7 2.6 28 942-969 2-30 (30)
204 PF12234 Rav1p_C: RAVE protein 64.0 70 0.0015 39.0 12.3 58 192-249 85-154 (631)
205 KOG4499 Ca2+-binding protein R 63.5 1.2E+02 0.0025 32.0 11.9 111 200-344 134-254 (310)
206 PF13371 TPR_9: Tetratricopept 62.4 21 0.00046 29.5 5.8 51 384-438 4-54 (73)
207 PLN03081 pentatricopeptide (PP 62.2 4E+02 0.0087 33.3 28.0 60 544-613 159-218 (697)
208 KOG0804 Cytoplasmic Zn-finger 61.2 3.8 8.2E-05 46.1 1.1 50 936-985 171-222 (493)
209 KOG0299 U3 snoRNP-associated p 61.1 1.8E+02 0.0038 33.5 13.8 86 17-119 228-317 (479)
210 PF13176 TPR_7: Tetratricopept 60.9 11 0.00024 26.8 3.1 23 587-609 2-24 (36)
211 PF14783 BBS2_Mid: Ciliary BBS 60.6 41 0.00089 31.0 7.4 55 42-117 16-70 (111)
212 KOG1900 Nuclear pore complex, 60.0 23 0.0005 45.5 7.6 89 29-119 176-273 (1311)
213 KOG0802 E3 ubiquitin ligase [P 59.8 2 4.4E-05 51.8 -1.4 44 939-982 290-338 (543)
214 PLN03218 maturation of RBCL 1; 58.9 5.5E+02 0.012 33.9 33.8 58 378-438 373-431 (1060)
215 PRK11788 tetratricopeptide rep 58.7 1.9E+02 0.0042 32.8 14.9 53 382-438 114-166 (389)
216 PRK11788 tetratricopeptide rep 58.7 2.6E+02 0.0056 31.7 16.0 26 587-612 217-242 (389)
217 PF14835 zf-RING_6: zf-RING of 58.3 6.8 0.00015 32.0 1.8 40 940-980 7-46 (65)
218 KOG0828 Predicted E3 ubiquitin 58.2 1.7 3.6E-05 49.1 -2.3 45 937-981 568-630 (636)
219 KOG0270 WD40 repeat-containing 57.8 91 0.002 35.5 10.9 75 32-122 330-408 (463)
220 PF12895 Apc3: Anaphase-promot 57.7 29 0.00064 29.9 6.0 50 387-438 1-50 (84)
221 KOG0316 Conserved WD40 repeat- 57.1 35 0.00076 35.5 7.0 68 33-119 147-214 (307)
222 KOG0309 Conserved WD40 repeat- 56.9 2.8 6E-05 49.8 -0.9 39 942-980 1030-1070(1081)
223 KOG0642 Cell-cycle nuclear pro 56.6 1.5E+02 0.0032 35.0 12.5 68 41-118 306-374 (577)
224 PF07719 TPR_2: Tetratricopept 56.3 10 0.00023 26.0 2.4 30 415-444 3-32 (34)
225 KOG0649 WD40 repeat protein [G 56.1 2.7E+02 0.0059 29.4 20.8 114 206-321 137-263 (325)
226 KOG3616 Selective LIM binding 55.6 3.6E+02 0.0078 33.0 15.5 61 549-609 621-686 (1636)
227 PF07649 C1_3: C1-like domain; 55.4 4.2 9.1E-05 27.8 0.2 28 942-969 2-30 (30)
228 KOG0288 WD40 repeat protein Ti 55.3 2.4E+02 0.0051 32.1 13.4 78 33-125 177-256 (459)
229 PF09976 TPR_21: Tetratricopep 54.9 23 0.0005 34.3 5.4 56 382-438 55-110 (145)
230 COG5194 APC11 Component of SCF 54.6 3.8 8.1E-05 34.6 -0.2 30 954-983 48-80 (88)
231 KOG3799 Rab3 effector RIM1 and 54.2 26 0.00057 32.7 5.0 42 920-966 45-86 (169)
232 KOG1897 Damage-specific DNA bi 53.9 5.8E+02 0.013 32.6 20.3 142 32-240 586-730 (1096)
233 PF09976 TPR_21: Tetratricopep 53.0 40 0.00087 32.6 6.8 57 381-438 17-73 (145)
234 KOG3579 Predicted E3 ubiquitin 52.4 7.7 0.00017 40.9 1.5 33 940-972 268-302 (352)
235 PRK11138 outer membrane biogen 52.1 4.2E+02 0.009 30.4 26.3 129 232-375 254-393 (394)
236 KOG4739 Uncharacterized protei 52.0 7.3 0.00016 40.6 1.3 42 942-983 5-46 (233)
237 smart00564 PQQ beta-propeller 52.0 26 0.00055 24.0 3.8 21 40-60 5-25 (33)
238 cd00189 TPR Tetratricopeptide 51.6 54 0.0012 27.2 6.8 56 380-439 5-60 (100)
239 KOG0973 Histone transcription 50.9 1.6E+02 0.0034 37.3 12.4 93 27-123 63-164 (942)
240 KOG0288 WD40 repeat protein Ti 50.9 3.8E+02 0.0083 30.5 14.1 70 32-119 220-292 (459)
241 KOG0271 Notchless-like WD40 re 50.5 3.4E+02 0.0073 30.7 13.4 159 32-260 248-448 (480)
242 PF13838 Clathrin_H_link: Clat 50.1 38 0.00083 28.1 4.9 26 378-403 9-34 (66)
243 PF00780 CNH: CNH domain; Int 49.5 3.6E+02 0.0078 28.9 15.6 142 195-339 8-173 (275)
244 KOG1408 WD40 repeat protein [F 49.1 5.9E+02 0.013 31.2 19.1 104 227-330 599-712 (1080)
245 PF08662 eIF2A: Eukaryotic tra 48.9 3.1E+02 0.0068 28.0 16.1 29 89-118 60-91 (194)
246 KOG2096 WD40 repeat protein [G 48.4 4E+02 0.0086 29.4 13.3 35 87-121 85-119 (420)
247 PF01535 PPR: PPR repeat; Int 48.2 25 0.00053 23.4 3.2 26 587-612 3-28 (31)
248 KOG1645 RING-finger-containing 48.1 2.6E+02 0.0056 31.8 12.2 125 197-344 301-432 (463)
249 KOG0612 Rho-associated, coiled 47.8 1.1 2.4E-05 56.1 -6.1 128 197-343 1149-1289(1317)
250 KOG0282 mRNA splicing factor [ 47.5 1.3E+02 0.0028 34.7 10.1 143 194-343 228-384 (503)
251 KOG1272 WD40-repeat-containing 47.0 88 0.0019 35.9 8.7 107 88-248 251-359 (545)
252 KOG1354 Serine/threonine prote 46.7 48 0.001 36.5 6.4 86 30-119 24-117 (433)
253 PLN03077 Protein ECB2; Provisi 46.6 7.5E+02 0.016 31.8 28.3 61 543-613 323-383 (857)
254 KOG1188 WD40 repeat protein [G 46.6 2.2E+02 0.0047 31.6 11.2 66 41-123 40-107 (376)
255 KOG1523 Actin-related protein 46.0 3.3E+02 0.0071 30.1 12.3 74 32-119 11-86 (361)
256 KOG0978 E3 ubiquitin ligase in 45.7 3.1 6.6E-05 50.3 -2.9 45 941-987 644-692 (698)
257 TIGR02795 tol_pal_ybgF tol-pal 45.0 52 0.0011 29.8 5.9 59 379-438 6-64 (119)
258 PF04841 Vps16_N: Vps16, N-ter 44.8 5.6E+02 0.012 29.7 26.6 87 11-118 12-109 (410)
259 PF13512 TPR_18: Tetratricopep 44.5 71 0.0015 31.0 6.6 59 379-438 14-72 (142)
260 COG5432 RAD18 RING-finger-cont 44.3 5.2 0.00011 42.2 -1.1 43 937-981 22-66 (391)
261 PF00400 WD40: WD domain, G-be 43.9 53 0.0011 23.2 4.6 30 87-116 10-39 (39)
262 KOG0270 WD40 repeat-containing 43.8 4.7E+02 0.01 30.1 13.6 88 16-120 269-362 (463)
263 KOG0771 Prolactin regulatory e 43.4 48 0.001 37.3 6.0 72 31-118 281-354 (398)
264 KOG1332 Vesicle coat complex C 43.4 2.3E+02 0.005 30.0 10.3 66 37-117 19-87 (299)
265 PF13445 zf-RING_UBOX: RING-ty 43.3 11 0.00025 28.3 0.8 29 943-972 1-31 (43)
266 KOG0307 Vesicle coat complex C 42.9 79 0.0017 40.2 8.3 90 32-139 117-216 (1049)
267 KOG0281 Beta-TrCP (transducin 42.9 1.9E+02 0.0042 31.9 10.1 87 16-121 220-308 (499)
268 KOG0274 Cdc4 and related F-box 42.8 6.9E+02 0.015 30.2 22.1 237 29-342 206-452 (537)
269 KOG1130 Predicted G-alpha GTPa 42.6 43 0.00093 37.7 5.4 55 383-437 25-79 (639)
270 KOG3881 Uncharacterized conser 42.4 65 0.0014 36.1 6.7 80 30-125 246-327 (412)
271 cd00029 C1 Protein kinase C co 41.8 16 0.00034 28.0 1.5 36 938-973 9-47 (50)
272 KOG2034 Vacuolar sorting prote 41.8 2E+02 0.0043 36.1 11.1 65 768-833 489-567 (911)
273 TIGR02300 FYDLN_acid conserved 41.5 22 0.00048 33.3 2.6 15 937-951 6-20 (129)
274 KOG2445 Nuclear pore complex c 41.0 5.3E+02 0.011 28.4 13.5 71 34-117 16-90 (361)
275 PF13181 TPR_8: Tetratricopept 40.6 47 0.001 22.7 3.7 26 587-612 4-29 (34)
276 PF09538 FYDLN_acid: Protein o 40.3 25 0.00054 32.3 2.8 15 937-951 6-20 (108)
277 PRK11447 cellulose synthase su 40.2 1.1E+03 0.023 31.7 26.3 54 382-439 358-411 (1157)
278 PRK15359 type III secretion sy 40.2 66 0.0014 31.2 6.0 61 381-445 30-90 (144)
279 KOG1034 Transcriptional repres 39.9 40 0.00086 36.9 4.5 67 36-116 314-381 (385)
280 PF08553 VID27: VID27 cytoplas 39.6 68 0.0015 40.2 7.1 70 30-117 576-646 (794)
281 PF00515 TPR_1: Tetratricopept 39.5 28 0.0006 24.0 2.4 30 415-444 3-32 (34)
282 KOG0640 mRNA cleavage stimulat 39.3 5.5E+02 0.012 28.2 12.6 73 33-121 174-249 (430)
283 TIGR00756 PPR pentatricopeptid 39.0 49 0.0011 22.3 3.6 27 587-613 3-29 (35)
284 PF13181 TPR_8: Tetratricopept 38.9 23 0.0005 24.3 1.9 25 415-439 3-27 (34)
285 COG2956 Predicted N-acetylgluc 38.8 5.9E+02 0.013 28.4 13.3 79 519-603 231-315 (389)
286 TIGR03300 assembly_YfgL outer 38.5 6.3E+02 0.014 28.6 26.7 99 231-338 187-304 (377)
287 PF04762 IKI3: IKI3 family; I 38.4 7.9E+02 0.017 32.0 16.7 128 194-332 316-457 (928)
288 KOG2280 Vacuolar assembly/sort 38.0 3.6E+02 0.0078 33.3 12.3 110 201-315 62-181 (829)
289 COG2075 RPL24A Ribosomal prote 37.2 30 0.00066 28.3 2.4 26 941-966 4-31 (66)
290 KOG0284 Polyadenylation factor 36.8 2E+02 0.0044 32.5 9.4 69 32-117 93-167 (464)
291 KOG0639 Transducin-like enhanc 36.8 3.9E+02 0.0085 31.2 11.7 155 33-254 420-584 (705)
292 KOG1517 Guanine nucleotide bin 36.2 3.4E+02 0.0074 34.8 12.0 77 31-119 1208-1288(1387)
293 KOG3002 Zn finger protein [Gen 36.2 21 0.00045 39.3 1.8 45 939-985 47-91 (299)
294 PF04423 Rad50_zn_hook: Rad50 36.1 12 0.00025 29.7 -0.0 11 942-952 22-32 (54)
295 TIGR00990 3a0801s09 mitochondr 35.9 4.6E+02 0.01 32.2 13.9 51 384-438 340-390 (615)
296 PF07719 TPR_2: Tetratricopept 35.7 60 0.0013 22.0 3.6 26 587-612 4-29 (34)
297 KOG3611 Semaphorins [Signal tr 35.7 68 0.0015 40.0 6.3 72 31-114 407-488 (737)
298 PRK10866 outer membrane biogen 35.4 1.1E+02 0.0023 32.8 7.2 58 380-438 37-94 (243)
299 COG3071 HemY Uncharacterized e 35.1 7.3E+02 0.016 28.3 15.6 154 569-732 168-340 (400)
300 KOG0268 Sof1-like rRNA process 34.8 1.7E+02 0.0037 32.7 8.3 88 16-121 170-262 (433)
301 TIGR02552 LcrH_SycD type III s 34.6 1.2E+02 0.0027 28.3 6.9 55 381-439 23-77 (135)
302 PF13041 PPR_2: PPR repeat fam 34.4 55 0.0012 25.0 3.6 27 587-613 6-32 (50)
303 PF07035 Mic1: Colon cancer-as 33.8 1.6E+02 0.0035 29.4 7.5 87 522-610 10-115 (167)
304 PF13174 TPR_6: Tetratricopept 33.6 44 0.00094 22.5 2.6 25 589-613 5-29 (33)
305 PF07494 Reg_prop: Two compone 33.4 49 0.0011 21.3 2.5 22 29-50 2-24 (24)
306 PF12854 PPR_1: PPR repeat 33.4 57 0.0012 22.9 3.1 24 586-609 9-32 (34)
307 KOG2111 Uncharacterized conser 33.3 7E+02 0.015 27.6 18.8 134 203-340 75-221 (346)
308 PF13525 YfiO: Outer membrane 33.2 1.1E+02 0.0024 31.6 6.7 58 380-438 10-67 (203)
309 PF11768 DUF3312: Protein of u 33.1 1.1E+02 0.0025 36.2 7.2 65 33-117 261-328 (545)
310 PF13771 zf-HC5HC2H: PHD-like 33.1 28 0.0006 30.7 1.8 33 940-972 36-69 (90)
311 PF13374 TPR_10: Tetratricopep 33.0 65 0.0014 22.9 3.6 27 587-613 5-31 (42)
312 TIGR00990 3a0801s09 mitochondr 32.8 1E+03 0.022 29.2 20.8 59 383-446 135-193 (615)
313 PF13360 PQQ_2: PQQ-like domai 32.8 5.7E+02 0.012 26.4 18.4 170 196-377 38-231 (238)
314 PF13812 PPR_3: Pentatricopept 32.6 73 0.0016 21.6 3.6 27 586-612 3-29 (34)
315 KOG0263 Transcription initiati 32.6 98 0.0021 37.7 6.7 70 32-118 578-649 (707)
316 PHA02926 zinc finger-like prot 32.6 12 0.00026 38.5 -0.7 35 938-972 168-209 (242)
317 KOG0553 TPR repeat-containing 32.4 1.3E+02 0.0029 32.8 7.0 34 412-445 148-181 (304)
318 PF08394 Arc_trans_TRASH: Arch 32.0 51 0.0011 23.9 2.6 24 943-966 1-24 (37)
319 KOG1272 WD40-repeat-containing 31.9 1.7E+02 0.0036 33.8 7.8 65 40-121 262-326 (545)
320 KOG0317 Predicted E3 ubiquitin 31.5 15 0.00032 39.4 -0.2 46 937-984 235-283 (293)
321 KOG1963 WD40 repeat protein [G 31.0 2E+02 0.0043 35.6 8.9 72 33-122 253-326 (792)
322 KOG0303 Actin-binding protein 31.0 2.3E+02 0.005 32.0 8.6 115 87-255 80-207 (472)
323 PF00412 LIM: LIM domain; Int 30.6 24 0.00052 28.0 0.9 30 941-971 27-56 (58)
324 KOG4577 Transcription factor L 30.6 14 0.00029 39.1 -0.6 33 939-971 91-123 (383)
325 COG1885 Uncharacterized protei 30.3 42 0.00091 30.0 2.4 26 931-957 39-65 (115)
326 PRK14891 50S ribosomal protein 29.9 42 0.00091 31.4 2.4 26 941-966 5-32 (131)
327 KOG0322 G-protein beta subunit 29.8 2.4E+02 0.0052 30.2 8.1 141 44-244 168-314 (323)
328 PF01011 PQQ: PQQ enzyme repea 29.8 78 0.0017 22.8 3.4 20 42-61 1-20 (38)
329 KOG1896 mRNA cleavage and poly 29.4 2.8E+02 0.0061 36.0 9.9 95 196-296 1109-1207(1366)
330 KOG2139 WD40 repeat protein [G 29.3 8.7E+02 0.019 27.4 18.9 160 32-251 141-309 (445)
331 KOG2394 WD40 protein DMR-N9 [G 29.1 3.7E+02 0.0079 31.8 10.0 86 40-138 184-272 (636)
332 smart00109 C1 Protein kinase C 28.8 16 0.00035 27.7 -0.4 35 938-972 9-45 (49)
333 KOG0268 Sof1-like rRNA process 28.6 5.8E+02 0.013 28.7 11.0 109 87-251 146-259 (433)
334 cd00189 TPR Tetratricopeptide 28.1 1.1E+02 0.0025 25.0 5.0 54 382-439 41-94 (100)
335 KOG4640 Anaphase-promoting com 27.9 1.6E+02 0.0035 35.3 7.2 59 197-258 35-99 (665)
336 PF10013 DUF2256: Uncharacteri 27.7 31 0.00067 25.6 1.0 13 939-951 7-19 (42)
337 PF08450 SGL: SMP-30/Gluconola 27.6 7.3E+02 0.016 26.0 16.1 143 196-343 53-224 (246)
338 PF10395 Utp8: Utp8 family; I 27.5 1.3E+03 0.027 28.7 22.4 159 215-375 120-304 (670)
339 PF13428 TPR_14: Tetratricopep 27.1 95 0.0021 23.0 3.6 27 587-613 4-30 (44)
340 KOG1898 Splicing factor 3b, su 27.1 1.5E+03 0.032 29.4 15.7 311 20-374 626-1001(1205)
341 KOG3881 Uncharacterized conser 26.9 9.8E+02 0.021 27.2 17.1 114 228-343 206-332 (412)
342 COG4338 Uncharacterized protei 26.8 21 0.00046 27.0 -0.0 15 937-951 9-23 (54)
343 KOG2003 TPR repeat-containing 26.8 7.6E+02 0.016 28.5 11.7 134 594-818 534-683 (840)
344 PLN03088 SGT1, suppressor of 26.6 1.4E+02 0.003 34.0 6.5 58 378-439 5-62 (356)
345 KOG1240 Protein kinase contain 26.6 9.1E+02 0.02 31.8 13.5 70 41-120 1061-1130(1431)
346 PF00628 PHD: PHD-finger; Int 26.6 70 0.0015 24.6 2.9 31 942-972 1-32 (51)
347 KOG0302 Ribosome Assembly prot 26.5 2E+02 0.0043 32.3 7.1 73 33-119 304-379 (440)
348 PLN03088 SGT1, suppressor of 26.5 1.4E+02 0.0031 33.9 6.6 61 381-445 42-102 (356)
349 KOG0285 Pleiotropic regulator 26.3 9.7E+02 0.021 27.0 15.8 70 33-119 237-308 (460)
350 COG5574 PEX10 RING-finger-cont 26.0 20 0.00044 37.8 -0.3 43 939-983 214-260 (271)
351 COG3046 Uncharacterized protei 26.0 1.6E+02 0.0034 33.6 6.3 46 836-900 255-305 (505)
352 PHA02610 uvsY.-2 hypothetical 25.8 26 0.00057 27.1 0.3 32 941-972 2-33 (53)
353 PF15227 zf-C3HC4_4: zinc fing 25.6 27 0.00059 26.0 0.4 28 943-972 1-28 (42)
354 TIGR02552 LcrH_SycD type III s 25.6 1.1E+02 0.0025 28.6 4.9 53 383-439 59-111 (135)
355 KOG1897 Damage-specific DNA bi 25.5 8.1E+02 0.017 31.4 12.6 51 203-253 807-858 (1096)
356 PRK00807 50S ribosomal protein 25.2 69 0.0015 25.2 2.6 28 941-968 2-31 (52)
357 KOG0287 Postreplication repair 25.1 9.4 0.0002 41.3 -2.9 49 937-987 20-70 (442)
358 PF02318 FYVE_2: FYVE-type zin 24.8 4.8E+02 0.01 24.3 8.7 33 939-971 53-88 (118)
359 KOG0296 Angio-associated migra 24.7 2E+02 0.0044 32.1 6.8 86 15-118 310-398 (399)
360 KOG2919 Guanine nucleotide-bin 24.7 9.9E+02 0.022 26.5 11.9 92 205-296 135-242 (406)
361 PF10607 CLTH: CTLH/CRA C-term 24.5 1.9E+02 0.0041 27.8 6.2 59 380-438 6-65 (145)
362 COG3063 PilF Tfp pilus assembl 24.4 37 0.00079 35.6 1.2 27 413-439 103-129 (250)
363 TIGR02658 TTQ_MADH_Hv methylam 24.2 1.1E+03 0.023 26.8 24.4 110 234-343 206-343 (352)
364 PRK03922 hypothetical protein; 23.8 66 0.0014 29.2 2.5 26 931-957 39-65 (113)
365 PRK15363 pathogenicity island 23.5 2E+02 0.0043 28.5 6.0 58 383-444 43-100 (157)
366 PF10571 UPF0547: Uncharacteri 23.5 32 0.0007 22.8 0.4 11 942-952 2-12 (26)
367 PF15525 DUF4652: Domain of un 23.5 4.7E+02 0.01 26.6 8.5 60 204-263 89-160 (200)
368 KOG0264 Nucleosome remodeling 23.4 2.9E+02 0.0062 31.7 7.8 74 30-120 271-349 (422)
369 TIGR03302 OM_YfiO outer membra 22.5 2.1E+02 0.0046 29.9 6.7 57 381-438 39-95 (235)
370 PRK10803 tol-pal system protei 22.3 2.2E+02 0.0049 30.8 6.8 57 381-438 148-205 (263)
371 PF04475 DUF555: Protein of un 22.2 86 0.0019 28.0 2.8 26 931-957 37-63 (102)
372 PF01246 Ribosomal_L24e: Ribos 22.1 77 0.0017 26.7 2.4 26 941-966 4-31 (71)
373 KOG4340 Uncharacterized conser 22.1 1.9E+02 0.0041 31.5 5.8 64 378-445 13-76 (459)
374 KOG4190 Uncharacterized conser 21.9 4.7E+02 0.01 30.7 9.2 76 32-119 736-813 (1034)
375 cd02684 MIT_2 MIT: domain cont 21.8 1E+02 0.0023 26.2 3.3 49 802-850 13-61 (75)
376 PF14781 BBS2_N: Ciliary BBSom 21.8 7.3E+02 0.016 23.9 10.5 105 191-295 8-127 (136)
377 KOG0955 PHD finger protein BR1 21.6 62 0.0013 41.6 2.6 57 935-993 214-294 (1051)
378 smart00028 TPR Tetratricopepti 21.6 1.3E+02 0.0029 18.7 3.4 24 416-439 4-27 (34)
379 PF13414 TPR_11: TPR repeat; P 21.4 72 0.0016 25.9 2.3 32 415-446 5-36 (69)
380 KOG0643 Translation initiation 21.1 2.7E+02 0.0059 29.9 6.6 95 28-138 144-240 (327)
381 PF08309 LVIVD: LVIVD repeat; 20.9 2.9E+02 0.0063 20.7 5.0 28 225-252 2-30 (42)
382 PF08273 Prim_Zn_Ribbon: Zinc- 20.9 89 0.0019 23.2 2.3 25 941-968 4-32 (40)
383 CHL00033 ycf3 photosystem I as 20.9 2.1E+02 0.0046 28.2 5.9 56 383-439 43-98 (168)
384 PRK00420 hypothetical protein; 20.8 67 0.0015 29.7 2.0 28 940-972 23-50 (112)
385 KOG2071 mRNA cleavage and poly 20.8 75 0.0016 37.8 2.9 42 931-972 500-556 (579)
386 COG4068 Uncharacterized protei 20.8 49 0.0011 26.3 0.9 16 937-952 5-20 (64)
387 PF14471 DUF4428: Domain of un 20.6 32 0.00069 27.0 -0.1 30 942-972 1-30 (51)
388 KOG1128 Uncharacterized conser 20.4 2.1E+02 0.0045 35.1 6.3 60 786-845 415-477 (777)
389 PF12894 Apc4_WD40: Anaphase-p 20.3 2E+02 0.0044 22.0 4.2 39 215-254 2-43 (47)
390 KOG0642 Cell-cycle nuclear pro 20.2 3.1E+02 0.0067 32.4 7.4 83 32-122 345-430 (577)
391 KOG0263 Transcription initiati 20.1 1.6E+03 0.034 27.9 13.5 75 32-124 536-613 (707)
392 KOG4445 Uncharacterized conser 20.0 15 0.00032 39.2 -2.6 34 939-972 114-148 (368)
No 1
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-101 Score=907.48 Aligned_cols=830 Identities=29% Similarity=0.428 Sum_probs=675.8
Q ss_pred ceeeee-EEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 30 RSLSIS-PISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 30 ~~~~I~-ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
....++ |+++||+.||+||.+|.|++|.+.+...+++... .....++.++ |+|+||.+|.+++..+.+++ +|
T Consensus 14 ~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~----~~~~~~~~~~--~~kk~i~~l~~~~~~~~ll~-l~ 86 (877)
T KOG2063|consen 14 LPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL----VTETVKFEKE--FSKKPINKLLVCASLELLLI-LS 86 (877)
T ss_pred cCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhh----hcchhHHhhh--hccchhHHHhhcchhcchhe-ec
Confidence 345566 9999999999999999999999998876543211 1233555555 78999999999999997777 99
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+.+.+|.+++++|.+..+++||++.|+.+... +++|
T Consensus 87 dsqi~~~~l~~~~~~~~~~~~Kg~~~f~~~~~~---------------------~s~~---------------------- 123 (877)
T KOG2063|consen 87 DSQIAVHKLPELEPVPSGTRLKGASLFTIDLRP---------------------ISTG---------------------- 123 (877)
T ss_pred CCcceeeecCcccccccccccccceeecccccc---------------------ccCC----------------------
Confidence 999999999999999999999999999976421 1110
Q ss_pred cccCCceEEEEEECceEEEEEEeCC-eEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceee-ecCCC--C
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNG-SFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVI-FTLPD--V 264 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l-~~~~~--~ 264 (997)
.....+|++++|++..+.|.+. .+...+++.+++.|++++|++..+|+|..+.|++++..+....+. |+.+. .
T Consensus 124 ---~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~ 200 (877)
T KOG2063|consen 124 ---PSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE 200 (877)
T ss_pred ---cceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccceeEEEeecceeEEEecCCCccccceeeeccccc
Confidence 1246799999999999999875 788889999999999999999999999999999998765444443 44442 6
Q ss_pred CCCCceEEcCCCCeEEEEeCCeEEEEccCCCc-cccccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEE-ecC
Q 043572 265 SCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQP-VGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAV-TFG 342 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~-~r~~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i-~~~ 342 (997)
+.+|+|++++++.+++++.|++|+|||.+|.+ .++++.|+.+|.++++.+||+++..+..||||+..++++||+| +++
T Consensus 201 s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~~ 280 (877)
T KOG2063|consen 201 SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLVWSEVPLSVVVESPYLIALLDRSVEIRSKLDGQLVQSITPLS 280 (877)
T ss_pred cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceEecccchhhcccCceEEEEccccEEEEeccCHHHhhcccccc
Confidence 78999999996669999999999999999999 7779999999999999999999999999999999999999999 777
Q ss_pred CCCCCCceecccccCCCcEEEEEcCCeEEEEeecC-HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHH-H
Q 043572 343 GEGGGQCIATDEECGAGKLLVVATPTKVICYQKVP-SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQI-G 420 (997)
Q Consensus 343 ~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~~~-~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~-~ 420 (997)
.. ..+++. .++++++++-+.+|.+.|+| +..||++|+++++|++|++|++.+....++.+..++.++.++ |
T Consensus 281 ~~---~~l~s~----~~~i~~~~~~s~v~~L~p~~~~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a 353 (877)
T KOG2063|consen 281 NG---RSLLSA----HNGIIFVASLSNVWILVPVSNFEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDA 353 (877)
T ss_pred cc---ceeeec----CCcEEEEEeccceEEEEeccchHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 73 555543 23678888999999999999 999999999999999999999998876666667788888888 8
Q ss_pred HHHhhhhcHHHHHHHHHhcCCCCcccc---cccccCCCC---ccccccc--CCCCCCCCCCCCCcchhhcchhhHHHHHH
Q 043572 421 FLLLFDLHFEEAVDHFLHSETMQPSEV---FPFIMRDPN---RWSLLVP--RNRYWGLHPPPVPVEDVVDNGLMAIQRAI 492 (997)
Q Consensus 421 ~~lf~~~~f~~A~~~f~~~~~~Dp~~l---~p~f~~~~~---~~~~~~~--~~~~w~~~~~~~~~~~~i~~~l~~l~~~~ 492 (997)
+.+|.+++|++||.+|.++ ..||+.+ ||++++.+. +|...+| ...+|+...++..+.+..
T Consensus 354 ~~lf~q~~f~ea~~~F~~~-~~d~~~vi~lfP~l~p~~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~----------- 421 (877)
T KOG2063|consen 354 FELFLQKQFEEAMSLFEKS-EIDPRHVISLFPDLLPSENSSIEFTGVVPIRAPELRGGDLVPAVLALIV----------- 421 (877)
T ss_pred HHHHHhhhHHHHHHHHHhh-ccChHHHHHhchhhcCCcccccceeeeccCchhhhccCcccchhhhhhh-----------
Confidence 9999999999999999986 4799885 888777665 5555555 335555544333332221
Q ss_pred HhhhcCcccccCCCCCCCCCchHHHHHHHHHHH-HHHHHHhhh----hhhhhHHHHHHHHHHHHHHHhccCchhhhcccC
Q 043572 493 FLRKAGVETAVDDGFLSNPPSRAELLELAIRNI-TRYLEVSRK----KELTILVKEGVDTLLMYLYRALNRVHDMENLAP 567 (997)
Q Consensus 493 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L-~~yL~~~r~----~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~ 567 (997)
+++..+... .. ..+...++ ..|+..... +.-.+.++++|||+|++||+++++ ....++++
T Consensus 422 ylt~~r~~~-------------~~-~l~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~IDttLlk~Yl~~n~-~~v~~llr 486 (877)
T KOG2063|consen 422 YLTQSRREE-------------NK-KLNKYKMLYMNYFKNTLISELLKSDLNDILELIDTTLLKCYLETNP-GLVGPLLR 486 (877)
T ss_pred HhHHHHHHH-------------HH-HHHHhhhhHHhhhhccCcchhhccchHHHHHHHHHHHHHHHHhcCc-hhhhhhhh
Confidence 121111000 00 00111111 133322211 112245789999999999999996 57778887
Q ss_pred CCC-cccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHH
Q 043572 568 SEN-SCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEA 646 (997)
Q Consensus 568 ~~n-~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~ 646 (997)
.+| +|++++++.+|.++++|.+|+.||+.+|+|++||++|+++.+...+ .|.. +..|.+ .+
T Consensus 487 len~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~---~d~~-----------~~~~~e----~i 548 (877)
T KOG2063|consen 487 LENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSD---TDSF-----------QLDGLE----KI 548 (877)
T ss_pred ccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccc---cccc-----------hhhhHH----HH
Confidence 665 9999999999999999999999999999999999999999985421 2221 223334 35
Q ss_pred HHhcCCC--CCHHHHHHHHhhhhccCchhhhhhcccc-c-ccCCCChhHHHHHhhccChHHHHHHHHHHHhcCCCCChHH
Q 043572 647 SKILEES--SDEDLILQHLGWIADINAVLAVKVLTSE-K-RINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQF 722 (997)
Q Consensus 647 ~~~L~~~--~~~~li~~~~~wll~~~p~~~l~if~~~-~-~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~ 722 (997)
++||++. ++.++||+|+.|+++.+|+.|++||++. . .++++++++|+++|.+..+.+++.||||++.+++..++.|
T Consensus 549 i~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~l 628 (877)
T KOG2063|consen 549 IEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLL 628 (877)
T ss_pred HHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHH
Confidence 6777775 4569999999999999999999999983 2 3589999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHH-HHHHHHHHhhcCCCCChHHHHhhccCCCchHHH
Q 043572 723 HTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCP-VQERLQIFLQSSDLYDPEDVLDLIEGSELWLEK 801 (997)
Q Consensus 723 h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~ 801 (997)
||.|+.+|+..+.+ ... ++.+ |++- .+. .|++|..||+.|+.|+++.+|..++...|++|+
T Consensus 629 ht~ll~ly~e~v~~----~~~---~~~k---------g~e~--~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~ 690 (877)
T KOG2063|consen 629 HTVLLKLYLEKVLE----QAS---TDGK---------GEEA--PETTVREKLLDFLESSDLYDPQLLLERLNGDELYEER 690 (877)
T ss_pred HHHHHHHHHHHHhh----ccC---chhc---------cccc--hhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHH
Confidence 99999998765543 100 1100 1111 112 499999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCC-----chHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHH
Q 043572 802 AILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGR-----PDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPL 876 (997)
Q Consensus 802 ~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~-----~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~ 876 (997)
+++++|+|+|++||.++++.|+|+++|+.||..++. .+.|..+|+.|+++..+.....-.+..+|+.|++.+|+.
T Consensus 691 aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~ 770 (877)
T KOG2063|consen 691 AILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLA 770 (877)
T ss_pred HHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHH
Confidence 999999999999999999999999999999998764 579999999999983322222345888999999999999
Q ss_pred HHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCcEEEcCCCcCccccCccCCccEE
Q 043572 877 QVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFA 956 (997)
Q Consensus 877 ~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~C~vC~k~l~~~~f~ 956 (997)
.|++++|++|++.++.+|+.+.|+.+.+.+|+.++.+++.++|.+....++.+.++.+++|+.+..|.+|.|+|+.++|+
T Consensus 771 ~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~l~q~E~~~~~~~l~~~~s~~~~l~~~~~C~~C~k~i~~s~f~ 850 (877)
T KOG2063|consen 771 QVLKLLPDDISLKDLCSFLSKLLRKRFEALRTTQVQKSLLQAELLPSTEELNKLRSSKIQLNDESLCSICEKRIGTSVFV 850 (877)
T ss_pred HHHHhCCccCcHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhcchHHHHHHhhcceEEEchhhHhHHHHhhhcCeeEE
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EcCCCeEEEeccccccCcccCCCCCC
Q 043572 957 MYPDDTIVCYKCYRRQGESTSITGRD 982 (997)
Q Consensus 957 v~p~g~~~H~~C~~~~~~~~~~t~~~ 982 (997)
+||+|+++|++|.++.+..-..+++.
T Consensus 851 ryp~g~lvh~~C~~~~q~~~~~~~~~ 876 (877)
T KOG2063|consen 851 RYPNGILVHLSCAKDLQGSKAVKNEG 876 (877)
T ss_pred ECCCCcEEEEEeechhccccccCCCC
Confidence 99999999999999886543334443
No 2
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-45 Score=416.21 Aligned_cols=715 Identities=19% Similarity=0.236 Sum_probs=472.9
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
-.|+|.+..+..+.+||..|.++.+....... +.+ .-++. ..+.+.+..|--||+
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~--------------~~~------~~s~~-----~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNPK--------------TNF------DHSSS-----ILEGEYVASCSDDGK 94 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCccc--------------ccc------ccccc-----ccCCceEEEecCCCc
Confidence 47889998999999999999999888876541 121 11122 455666788777999
Q ss_pred EEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccccc
Q 043572 112 LFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHC 191 (997)
Q Consensus 112 l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 191 (997)
+.+..+.+-+-.++...-+-...++++|+...
T Consensus 95 v~I~sl~~~~~~~~~df~rpiksial~Pd~~~------------------------------------------------ 126 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQYDFKRPIKSIALHPDFSR------------------------------------------------ 126 (846)
T ss_pred EEEeeccCCccceeEecCCcceeEEeccchhh------------------------------------------------
Confidence 99999877665555555566677777764211
Q ss_pred CCceEEEEEECce-EEEEEEeCCeEEEEEeEe---cCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCCCCCC
Q 043572 192 RGDNVFAVIIGKR-LVLIELVNGSFVILKEIQ---CMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 192 ~~~~~l~Va~kkk-i~i~~~~~~~~~~~kei~---~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
...+.+|+.+++ +.+|+.+. |...+.+. .-++|.++.|.|+.|.++...|..++|+.+++....++.+..+.+
T Consensus 127 -~~sk~fv~GG~aglvL~er~w--lgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 127 -QQSKQFVSGGMAGLVLSERNW--LGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVR 203 (846)
T ss_pred -hhhhheeecCcceEEEehhhh--hcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCC
Confidence 112345665555 88887543 33222222 234679999999999999999999999988877766766654433
Q ss_pred C-----ceEEcCCCCeEEEE-eCCeEEEEccCCCccc-cccccCCC-CCeEEEe---CcEEEEEE--CCeEEEEecCC--
Q 043572 268 P-----MLKLLSKEQKVLLL-VDNVGVFVDAHGQPVG-GSLVFRKS-PDAVGEL---SMYVVVLR--GGKMELYHKKS-- 332 (997)
Q Consensus 268 p-----~i~~~~~~~e~Ll~-~~~~g~fv~~~G~~~r-~~i~w~~~-P~~i~~~---~PYll~~~--~~~ieI~~~~~-- 332 (997)
| .+.-.+ +.-++++ .++.-++.=.++.... .+...+.. ...+..+ ..|+-++. ...+.+-....
T Consensus 204 ~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~~~~s~~a~~~~~~~~~~V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~ 282 (846)
T KOG2066|consen 204 PELFPPHLHWQD-EDRLVIGWGDSVKICSIKKRSSSEARSFRLPSLKKVEIVSHFETSFYISGLAPLGDQLVVLGFDKDI 282 (846)
T ss_pred cccCCCceEecC-CCeEEEecCCeEEEEEEecccccccccccCCccceeeeEEEeeeeeeeeccccccceeEEEeeeccc
Confidence 3 333333 3355555 4444444222332221 13444443 2233333 33555543 23333322110
Q ss_pred --C---------------ceEEEEecCCCC-C---------CCceecccccCC----CcEEEEEcCCeEEEEeecCHHHH
Q 043572 333 --G---------------ICVQAVTFGGEG-G---------GQCIATDEECGA----GKLLVVATPTKVICYQKVPSEEQ 381 (997)
Q Consensus 333 --~---------------~lvQ~i~~~~~~-~---------~~~i~~~~~~~~----g~~~~v~s~~~V~~l~~~~~~~q 381 (997)
+ ..++-+..+... . .+..+.+|+.+. ...+|+.|+++|....+.+.++.
T Consensus 283 ~~~e~~s~~~~~r~~~~~peir~~~~~~~Ei~~Dal~~~~~e~~~~~DY~L~~~~~~~~~yyIvspkDiV~a~~~~~~Dh 362 (846)
T KOG2066|consen 283 SEGEFTSARPSSRAKGNRPEIRIVSLNNDEICSDALIVRGFEELSINDYHLGGHPKTEPLYYIVSPKDIVVAKERDQEDH 362 (846)
T ss_pred ccccccccchhhhccCCCceEEeccccchhhhhhhhhhcchhhcCCccccccCCCCCCceEEEecCCceEEEeecCcchh
Confidence 0 112333222110 0 012223344321 13588999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh-cCCCC---ccccccccc-CCCC
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH-SETMQ---PSEVFPFIM-RDPN 456 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~-~~~~D---p~~l~p~f~-~~~~ 456 (997)
|++|++.++|++|+.+++......+ +-.+..+-..|-+||+..++|++|.....+ .|..- -.++|-+-. +...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~--~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEE--RFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcc--ccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 9999999999999999988664322 223556667777999999999999876654 11100 000110000 0000
Q ss_pred cccccccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHH-HHHHHHHhhhh
Q 043572 457 RWSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRN-ITRYLEVSRKK 535 (997)
Q Consensus 457 ~~~~~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-L~~yL~~~r~~ 535 (997)
....+.|.+ |+.+-. ....+ |..||....+
T Consensus 441 ~Ia~~lPt~-------~~rL~p-----------------------------------------~vYemvLve~L~~~~~- 471 (846)
T KOG2066|consen 441 DIAPYLPTG-------PPRLKP-----------------------------------------LVYEMVLVEFLASDVK- 471 (846)
T ss_pred hhhccCCCC-------CcccCc-----------------------------------------hHHHHHHHHHHHHHHH-
Confidence 000011110 000000 01111 1111110000
Q ss_pred hhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCC----hhHHHHHHhhcCChHHHHHHHHHHH
Q 043572 536 ELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGH----LRTLAFLYASKGMSSKALAIWRVLA 611 (997)
Q Consensus 536 ~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~----~~~L~~ly~~~~~~~~AL~il~~l~ 611 (997)
...+.|-++=-.+|. +.|..+.++..++++.. -+.|+.||...++|.+|+.++.++.
T Consensus 472 ----~F~e~i~~Wp~~Lys---------------~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 472 ----GFLELIKEWPGHLYS---------------VLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ----HHHHHHHhCChhhhh---------------hhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 011111121112222 23334444455544432 3559999999999999999999877
Q ss_pred HhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhH
Q 043572 612 RNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDK 691 (997)
Q Consensus 612 ~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~ 691 (997)
+.+.. +.+.. ..-.+.+.+-..-+|..+.+.++++++++ .+.+++..
T Consensus 533 ~~~vf----------------------------~lI~k---~nL~d~i~~~Iv~Lmll~skka~~lLldn--~d~ip~a~ 579 (846)
T KOG2066|consen 533 DKDVF----------------------------DLIKK---HNLFDQIKDQIVLLMLLDSKKAIDLLLDN--RDSISPSE 579 (846)
T ss_pred ChHHH----------------------------HHHHH---HhhHHHHHHHHHHHHccchhhHHHHHhhc--cccCCHHH
Confidence 54211 11111 11246677777788899999999999974 57899999
Q ss_pred HHHHhhccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHH
Q 043572 692 VIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQE 771 (997)
Q Consensus 692 Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 771 (997)
|++.+.. .|..+..||..+..++......||..++++|. ++.|.
T Consensus 580 Vveql~~-~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYA-----------------------------------EyDrk 623 (846)
T KOG2066|consen 580 VVEQLED-NPKLLYCYLHKLFKRDHFMGSEYHDKQIELYA-----------------------------------EYDRK 623 (846)
T ss_pred HHHHHhc-ChHHHHHHHHHHhhcCccccchhhhHHHHHHH-----------------------------------HHhHh
Confidence 9999985 45799999999998887778999999999882 48899
Q ss_pred HHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCC
Q 043572 772 RLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDS 851 (997)
Q Consensus 772 kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~ 851 (997)
+|+.||+.|++|++++++++|.+.++++|.|||+||||++.+||.+++++++|+++|++||+.++++++|..|+.+++..
T Consensus 624 ~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 624 KLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDK 703 (846)
T ss_pred hhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHh
Q 043572 852 QDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAV--DIDARLARLE 929 (997)
Q Consensus 852 ~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e--~l~~~~~~~~ 929 (997)
|.+ +..+|+ .+.++||..|+..||++..|+.+++-|.+++++++.+..-.+-...+...+ .+..++. +
T Consensus 704 -----Pe~--~~~ll~-i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~--~ 773 (846)
T KOG2066|consen 704 -----PEF--IKALLN-IGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQDYNLQLELRQGCYDILKNDSKSLLNKFL--K 773 (846)
T ss_pred -----cHH--HHHHHH-hhhcccHHHHHhcCCCCCCCccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 444 566665 567799999999999999999999999999999986522111111122223 4444443 5
Q ss_pred hccCcEEEcCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc
Q 043572 930 ERSRHVQINDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 930 ~~~~~v~I~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~ 972 (997)
.+++++.+..+.+|..|..++.. ..++||.|||+||..|....
T Consensus 774 ~~~~Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~ 821 (846)
T KOG2066|consen 774 TARRGVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMME 821 (846)
T ss_pred HHhcCeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccccH
Confidence 67899999999999999999974 34889999999999998765
No 3
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-41 Score=380.58 Aligned_cols=802 Identities=17% Similarity=0.148 Sum_probs=507.1
Q ss_pred CCCCceeeccccccccCCCCCCCccceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCcccccccccc
Q 043572 5 RPKSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTV 84 (997)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (997)
...+=.+|+...+++. .-..+ ..|+|++..+..+++||.+|.+..+.-.-..- ..|--
T Consensus 5 qWrrF~lFq~~~i~~~-----~~~~G-~~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~--------------~~fqa-- 62 (933)
T KOG2114|consen 5 QWRRFSLFQWKEIPSL-----ENFVG-NAISCCSSSTGSVVIGTADGRVVILNSSFQLI--------------RGFQA-- 62 (933)
T ss_pred hcceeeeeeeeecCCc-----ccCCC-CceeEEcCCCceEEEeeccccEEEecccceee--------------ehhee--
Confidence 3344455666666652 11233 49999999999999999999976554332110 11110
Q ss_pred ccCCCcceEEEeecccCcEEEEecC--C----eEEEeecCccccccccccccc-eEEEEe-ecccCCccccccccccccc
Q 043572 85 SVADSPVESIFVLDDVGKVLLLFCD--Q----CLFLTDSLLTQPLKKLGFLKG-ISVIAK-RIRTSDSESTNLLENNSVS 156 (997)
Q Consensus 85 ~~~~~~I~qi~vl~~~~~lLv~l~d--~----~l~~~~l~~l~~~~~~~~~kg-~~~f~~-~~~~~~~~~~~~~~~~~~~ 156 (997)
...+-|+++.++.+.+ +|+++.. + .|.+|++.-.++... +..-+ ...|.. ++....|.|.-.
T Consensus 63 -~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l~------- 132 (933)
T KOG2114|consen 63 -YEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDKNNS-PQCLYEHRIFTIKNPTNPSPASSLA------- 132 (933)
T ss_pred -cchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCCCCC-cceeeeeeeeccCCCCCCCcceEEE-------
Confidence 1233477777777777 7776653 2 578888755443211 11111 111110 010011111000
Q ss_pred cccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEE-ECceEEEEEEe--CCeEEEE-EeEecCCcceEEEE
Q 043572 157 SLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELV--NGSFVIL-KEIQCMDGVKTMVW 232 (997)
Q Consensus 157 ~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~--~~~~~~~-kei~~~~~~~~l~~ 232 (997)
+. .....++|+ +.-.|.+|+=. .++-.+. -+....++|+.+++
T Consensus 133 --------------------------------Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 133 --------------------------------VS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred --------------------------------EE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 00 111234444 34445555422 1111121 12223457888888
Q ss_pred eCC--E-EEEEECCcEEEEEecCCcceeeecCCCCCCCCceEEcC-CCCeEEEEeCCeEEEEccCCCccccccccCCCCC
Q 043572 233 LND--S-IIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLS-KEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPD 308 (997)
Q Consensus 233 ~~~--~-l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~-~~~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~ 308 (997)
..+ . ++|++.+...++.+. |+.+.+-..+..+..-.+..+. ..++|++|.+++..|++.+|+...-++.-.....
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEE
Confidence 853 3 688899999999997 6663333366666666777775 3457999999999999999875422222223344
Q ss_pred eEEEeCcEEEEEEC-CeEEEEecCCCceEEEE---ecCCCCCCCc-----eecccccCCC-cEEEEEcCCeEEEEeecCH
Q 043572 309 AVGELSMYVVVLRG-GKMELYHKKSGICVQAV---TFGGEGGGQC-----IATDEECGAG-KLLVVATPTKVICYQKVPS 378 (997)
Q Consensus 309 ~i~~~~PYll~~~~-~~ieI~~~~~~~lvQ~i---~~~~~~~~~~-----i~~~~~~~~g-~~~~v~s~~~V~~l~~~~~ 378 (997)
...+.+-|++++++ .+.+.-+..+..-.+.+ ++++..++-. ++..+-.| + +.+++.+++.+.+|.+.|+
T Consensus 259 ~~~~~~g~~L~v~~~~~~~~~s~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w-~~~~~vltsdg~~~~L~ek~l 337 (933)
T KOG2114|consen 259 MLVFSFGLLLCVTTDKGTENTSLSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEW-SFDCLVLTSDGVVHELIEKDL 337 (933)
T ss_pred EEEEecCEEEEEEccCCCCCcccCccchhheeehhhhcCcccchHHhHHHHHHHHHhc-CCcEEEEecCCceeeeeeccH
Confidence 44555578887764 22332222111111111 1122111100 01111123 4 6678889999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh-cCCCCcccccccccCCCCc
Q 043572 379 EEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH-SETMQPSEVFPFIMRDPNR 457 (997)
Q Consensus 379 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~-~~~~Dp~~l~p~f~~~~~~ 457 (997)
+.+++.|+++..|+.|+.||++... +.+.+..|+++||.++|.+|+|++|+++|++ .|.+||.+|+..|++
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLd---- 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLD---- 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcC----
Confidence 9999999999999999999988653 2456889999999999999999999999998 467888888877642
Q ss_pred ccccccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 043572 458 WSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKEL 537 (997)
Q Consensus 458 ~~~~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~ 537 (997)
.+-+++|+.||+..+++.+
T Consensus 410 -------------------------------------------------------------aq~IknLt~YLe~L~~~gl 428 (933)
T KOG2114|consen 410 -------------------------------------------------------------AQRIKNLTSYLEALHKKGL 428 (933)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHccc
Confidence 2346889999999988877
Q ss_pred hhHHHHHHHHHHHHHHHhccCchhhhcccCCCC----cccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 538 TILVKEGVDTLLMYLYRALNRVHDMENLAPSEN----SCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 538 ~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n----~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
+. +..-|.|+.||++.++.+.|.+|++... .+|++.+.++|++.+++++...|..+.++|+.+|.++.+...+
T Consensus 429 a~---~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~n 505 (933)
T KOG2114|consen 429 AN---SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHN 505 (933)
T ss_pred cc---chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcC
Confidence 64 5677889999999999999999997433 6789999999999999999999999999999999998875532
Q ss_pred cCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCC---CCHHHHHHHHhhhhccCchhhhhhcccccc-cCCCCh
Q 043572 614 YSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEES---SDEDLILQHLGWIADINAVLAVKVLTSEKR-INQLSP 689 (997)
Q Consensus 614 ~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~---~~~~li~~~~~wll~~~p~~~l~if~~~~~-~~~l~~ 689 (997)
+. ++++|++.+ +-...+.+|+.||++++|++.+++|..... ..+-+-
T Consensus 506 -------------------------y~----eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~ 556 (933)
T KOG2114|consen 506 -------------------------YE----EALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGK 556 (933)
T ss_pred -------------------------HH----HHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCC
Confidence 11 455666654 356678899999999999999988865310 011111
Q ss_pred hH-------HHHHhh--ccChHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHHHH-H-----H-HHHHhh-cCccccCCc
Q 043572 690 DK-------VIAAID--SKKVEILQRYLQWLIEDQDSDDT--QFHTLYALSLAKS-A-----I-EAFEEE-SGSKAFGTQ 750 (997)
Q Consensus 690 ~~-------Vl~~L~--~~~~~~~~~YLE~li~~~~~~~~--~~h~~L~~lyi~~-~-----l-~~l~~~-~~~~~~~~~ 750 (997)
.. -++++. ..+++....||+.+......... .+...+..+++-. . + .....+ .........
T Consensus 557 ~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~~~~~~ 636 (933)
T KOG2114|consen 557 GKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQQYEGF 636 (933)
T ss_pred CchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchhhhccccchhhhhhhhccccccchhhccHHHHHHHHhhccc
Confidence 11 122221 13456778888876543322111 1111121222100 0 0 000000 000000000
Q ss_pred CCccccCCCCCCC-cccHHHHHH----HHH------Hhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHH
Q 043572 751 MGETRSSGYGKNS-IFQCPVQER----LQI------FLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQIL 818 (997)
Q Consensus 751 ~~~~~~~~~~~~~-~~~~~~r~k----L~~------fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il 818 (997)
+-+ +......+. .+.+..+.. -.. ++.. -+.||.+.++-+++-.++.....++|++++...+-+...
T Consensus 637 ~sd-pq~kt~~~~~l~~~~~~~~~~~~~~~l~ksn~l~d~~~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~ 715 (933)
T KOG2114|consen 637 DSD-PQVKTTTLYDLYLELDAEDVPERTIILRKSNKLLDYAASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYF 715 (933)
T ss_pred ccC-hhhhhccchhhHHHHHhhhcccccchhhhhcchhhhhhccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHH
Confidence 000 000000000 000011111 001 1111 135888999999998899999999999999999988888
Q ss_pred HHhcCCHHHHHHHHhhcC--CchHHHHHHHHhcCCCCCCchhHHHHHHHHHh--ccCCCCHHHHhhhCCCC--cchhhhH
Q 043572 819 ALKLEDSEAAEQYCAEIG--RPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHN--HGESLDPLQVLETLSPD--MPLQLAS 892 (997)
Q Consensus 819 ~~~l~D~~~Ae~yC~~~~--~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~--~~~~ld~~~VL~~lP~~--~~i~~l~ 892 (997)
. +.+|++.+...|...+ ++++|..+|+++.+...-. +..+.+-++|+. ....|.|..||+.|..+ ..+..++
T Consensus 716 ~-q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~-~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ltls~Ik 793 (933)
T KOG2114|consen 716 Q-QISDPETVITLCERLGKEDPSLWLHALKYFVSEESIE-DCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTLTLSVIK 793 (933)
T ss_pred H-HhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchh-hHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCceEEehhH
Confidence 7 7899999999999986 5789999999999876322 223344555543 35789999999999866 6788999
Q ss_pred HHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhhccCcEEEcCCCcCccccCccCCccEEEcCCCeEEEecccc
Q 043572 893 DTILRMLRARLHHH--RQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 893 ~fL~~~l~~~~~~~--~~~~i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
|++.+.++.+.... ++..|...=...++++.+++.++... .|.+.++|..|+-.|.- ++|-|-|||.||++|+.
T Consensus 794 D~ii~~l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa---~i~q~skCs~C~~~Ldl-P~VhF~CgHsyHqhC~e 869 (933)
T KOG2114|consen 794 DYIIKWLNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSA---QIFQVSKCSACEGTLDL-PFVHFLCGHSYHQHCLE 869 (933)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhccc---ceeeeeeecccCCcccc-ceeeeecccHHHHHhhc
Confidence 99999999887653 33346555455667778887664333 46666999999988874 68889999999999999
Q ss_pred ccCcccCCCCCC
Q 043572 971 RQGESTSITGRD 982 (997)
Q Consensus 971 ~~~~~~~~t~~~ 982 (997)
+. +.+||+|..
T Consensus 870 ~~-~~~CP~C~~ 880 (933)
T KOG2114|consen 870 DK-EDKCPKCLP 880 (933)
T ss_pred cC-cccCCccch
Confidence 64 578998875
No 4
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=100.00 E-value=6.7e-34 Score=312.38 Aligned_cols=238 Identities=26% Similarity=0.416 Sum_probs=202.6
Q ss_pred EEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEe
Q 043572 36 PISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLT 115 (997)
Q Consensus 36 ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~ 115 (997)
|++.|+++||+||++| |+.|...... ...+. ..+.+|.||.++|+.+.+|+ |+|++|++|
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~-------------~~~~i-----~~~~~I~ql~vl~~~~~llv-Lsd~~l~~~ 61 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPS-------------KPTRI-----LKLSSITQLSVLPELNLLLV-LSDGQLYVY 61 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCc-------------cceeE-----eecceEEEEEEecccCEEEE-EcCCccEEE
Confidence 8889999999999999 8889882211 11222 24556999999999997777 999999999
Q ss_pred ecCcccccc---------------ccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccC
Q 043572 116 DSLLTQPLK---------------KLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKAN 180 (997)
Q Consensus 116 ~l~~l~~~~---------------~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 180 (997)
+|+.+.+.. .+..+|||+.|+...
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~----------------------------------------- 100 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNG----------------------------------------- 100 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeecc-----------------------------------------
Confidence 999988665 467789999999211
Q ss_pred CccchhcccccCCceEEEEEECceEEEEEEeCC--eE-EEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCccee
Q 043572 181 GVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SF-VILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 181 g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~-~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~ 257 (997)
...+..++|||+||+|.+|+|..+ .| +..+|+.+|+.|.+|+|.++.||||++++|.++|+.++...+
T Consensus 101 ---------~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 101 ---------GHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSE 171 (275)
T ss_pred ---------ccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceE
Confidence 002446799999999999999984 78 899999999999999999999999999999999999999999
Q ss_pred eecCCCCC---------CCC-ceEEcCCCCeEEEEeCCeEEEEccCCCccc-cccccCCCCCeEEEeCcEEEEEECCeEE
Q 043572 258 IFTLPDVS---------CPP-MLKLLSKEQKVLLLVDNVGVFVDAHGQPVG-GSLVFRKSPDAVGELSMYVVVLRGGKME 326 (997)
Q Consensus 258 l~~~~~~~---------~~p-~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r-~~i~w~~~P~~i~~~~PYll~~~~~~ie 326 (997)
+++.++.. ..| .+..+++ +|||||++++|+|||.+|+++| ++|.|++.|.++++.+|||+++.++.||
T Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iE 250 (275)
T PF00780_consen 172 LLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIE 250 (275)
T ss_pred EeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCCEEE
Confidence 99776432 333 4555564 5999999999999999999999 5999999999999999999999999999
Q ss_pred EEecCCCceEEEEecCCC
Q 043572 327 LYHKKSGICVQAVTFGGE 344 (997)
Q Consensus 327 I~~~~~~~lvQ~i~~~~~ 344 (997)
||++.+|+++|+|++++.
T Consensus 251 V~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 251 VRSLETGELVQTIPLPNI 268 (275)
T ss_pred EEECcCCcEEEEEECCCE
Confidence 999999999999998874
No 5
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-32 Score=312.86 Aligned_cols=523 Identities=17% Similarity=0.182 Sum_probs=382.5
Q ss_pred CCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCC--ceecccccCCCcEEEEEcCCeEEEEeecCHHHHH
Q 043572 305 KSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQ--CIATDEECGAGKLLVVATPTKVICYQKVPSEEQI 382 (997)
Q Consensus 305 ~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~--~i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~~qi 382 (997)
.+|.+++...-+++.+..+.|.+-+..+++.+=.-+++.+..|. .++++..+ +.||+.|.+.|+.+...+....+
T Consensus 288 ~~p~~ivLT~yH~LLl~~d~V~avs~Ln~~vI~~~~~n~s~~g~~LGlv~D~va---~~~w~YTq~~vf~~~vndE~R~v 364 (911)
T KOG2034|consen 288 EPPKAIVLTEFHFLLLYADRVLAVSLLNGEVIYRDQFNESELGGILGLVSDSVA---ETFWLYTQTSVFEYGVNDEARDV 364 (911)
T ss_pred CCcceehHHHHHHHHHhcCceeeeeccCccccchhccCchhcccceeeeecccc---ceEEEEEeceeeeeeeccchHHH
Confidence 56889999888888888999999999888554333444322222 24555322 46899999999999999988877
Q ss_pred H-HHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc-cccccccCCCCcccc
Q 043572 383 K-DLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS-EVFPFIMRDPNRWSL 460 (997)
Q Consensus 383 ~-~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~-~l~p~f~~~~~~~~~ 460 (997)
. .+++.|+|+.|++.|+.-+ +.+..+..++|..+|.+++|..|++++.++ ..|. +|--.|+..+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p-------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--~~~FEEVaLKFl~~~~---- 431 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRP-------DALETVLLKQADFLFQDKEYLRAAEIYAET--LSSFEEVALKFLEINQ---- 431 (911)
T ss_pred HHHHHhcchHHHHHHhccCCH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--hhhHHHHHHHHHhcCC----
Confidence 5 4899999999999997643 235678888999999999999999999874 2232 24333332100
Q ss_pred cccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 043572 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTIL 540 (997)
Q Consensus 461 ~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~~~~ 540 (997)
+++|. .||.|+-.. + ++..|. ...
T Consensus 432 ---------------------~~~L~-----~~L~KKL~~-------l-t~~dk~-----q~~----------------- 455 (911)
T KOG2034|consen 432 ---------------------ERALR-----TFLDKKLDR-------L-TPEDKT-----QRD----------------- 455 (911)
T ss_pred ---------------------HHHHH-----HHHHHHHhh-------C-ChHHHH-----HHH-----------------
Confidence 00111 112111000 0 000111 112
Q ss_pred HHHHHHHHHHHHHHhc-cCc-------------------hhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCC
Q 043572 541 VKEGVDTLLMYLYRAL-NRV-------------------HDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGM 599 (997)
Q Consensus 541 ~~~~vDT~Ll~~y~~~-~~~-------------------~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~ 599 (997)
.+-|+|+.+|++. |.. .++..++. ..-..+-+.+.+++.++++.+.++.+.--.++
T Consensus 456 ---~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d 532 (911)
T KOG2034|consen 456 ---ALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD 532 (911)
T ss_pred ---HHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2333444444331 100 01112111 12245678899999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcc
Q 043572 600 SSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLT 679 (997)
Q Consensus 600 ~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~ 679 (997)
++..+..|.+.... .++++.|.+..+.++.++|++-|+.+.|...+..++
T Consensus 533 ~~~vv~~~~q~e~y------------------------------eeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm 582 (911)
T KOG2034|consen 533 YEFVVSYWIQQENY------------------------------EEALEVLLNQRNPELFYKYAPELITHSPKETVSAWM 582 (911)
T ss_pred HHHHHHHHHHHHHH------------------------------HHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHH
Confidence 99999999876542 135566666678899999999999999999999998
Q ss_pred cccccCCCChhHHHHHhhc-------cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCC
Q 043572 680 SEKRINQLSPDKVIAAIDS-------KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMG 752 (997)
Q Consensus 680 ~~~~~~~l~~~~Vl~~L~~-------~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~ 752 (997)
... +..++..+...|.- .....+++|||+++...+..++.+||.|..+|+.. . .+
T Consensus 583 ~~~--d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~-----~-------~~---- 644 (911)
T KOG2034|consen 583 AQK--DLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKH-----E-------RD---- 644 (911)
T ss_pred Hcc--ccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcC-----C-------cc----
Confidence 753 45566666555431 23568999999999999999999999999888431 0 00
Q ss_pred ccccCCCCCCCcccHHHHHHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHH
Q 043572 753 ETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC 832 (997)
Q Consensus 753 ~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC 832 (997)
..-++.....|-++...||+..++++|.+..-...+++||.+++.|++|+++.+. .|.+.|+..+
T Consensus 645 -------------~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~--~d~dlak~~A 709 (911)
T KOG2034|consen 645 -------------DLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQ--FDIDLAKVIA 709 (911)
T ss_pred -------------chHHHHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhh--cCHHHHhhhh
Confidence 0123444445555567999999999999988888999999999999999999994 5699999888
Q ss_pred hhcCC-----chHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 833 AEIGR-----PDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 833 ~~~~~-----~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
....+ +.+|+.+.++++.... .++.++.+|++ .+.+...++|+.+|+...|+.+++.++..+++++++.+
T Consensus 710 ~~~ee~e~lrKkLWLkIAkh~v~~~~----~ikk~i~~Lk~-~~lLkiedlLpffpdf~~id~~keaic~~L~~~n~rie 784 (911)
T KOG2034|consen 710 NDPEEDEDLRKKLWLKIAKHVVKQEN----DIKKAIRFLKE-NELLTIEDLLPFFPDFTKIDNLKEAICDFLEDYNKRIE 784 (911)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHhcc-CcccchhhhhccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 77653 4799999999998753 37789999987 78999999999999999999999999999999987765
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHhhccCcEEEcCCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 908 QGQ--IVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 908 ~~~--i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
+.+ |..+-..+..++.+++. .+.|+.++.+...|.+|+++|...+|++|||||.||..|+...
T Consensus 785 el~~em~eat~~a~~I~~~~~~--l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 785 ELQEEMIEATELADEIRTEISK--LRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--hhcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 543 44444445566677764 4889999999999999999999999999999999999998764
No 6
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=99.94 E-value=4e-25 Score=243.33 Aligned_cols=232 Identities=19% Similarity=0.276 Sum_probs=172.1
Q ss_pred ecC-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe--EEEe
Q 043572 39 DCQ-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC--LFLT 115 (997)
Q Consensus 39 ~~~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~--l~~~ 115 (997)
.++ ++|++||++|..+.+ +.+... ...+. +++++|+||.++++.+.|++ |+|++ |++|
T Consensus 10 ~~~~~~lL~GTe~Gly~~~-~~~~~~------------~~~kl-----~~~~~v~q~~v~~~~~lLi~-Lsgk~~~L~~~ 70 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLN-ISDQPG------------TLEKL-----IGRRSVTQIWVLEENNVLLM-ISGKKPQLYSH 70 (302)
T ss_pred ccCCcEEEEEeCCceEEEE-cccCCC------------CeEEe-----cCcCceEEEEEEhhhCEEEE-EeCCcceEEEE
Confidence 455 589999999955544 443211 11222 48889999999999995555 99997 9999
Q ss_pred ecCcccc----------------ccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc
Q 043572 116 DSLLTQP----------------LKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA 179 (997)
Q Consensus 116 ~l~~l~~----------------~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 179 (997)
+|..|.. .+++..+|||+.|++..
T Consensus 71 ~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~---------------------------------------- 110 (302)
T smart00036 71 PLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVN---------------------------------------- 110 (302)
T ss_pred EHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEc----------------------------------------
Confidence 9998874 23567888888888542
Q ss_pred CCccchhcccccCCceEEEEEECceEEEEEEeCC--eEEEEEeE---e-cCCcceEEEEe-----CCEEEEEECC-cEEE
Q 043572 180 NGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SFVILKEI---Q-CMDGVKTMVWL-----NDSIIVGTVN-GYSL 247 (997)
Q Consensus 180 ~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~~~~kei---~-~~~~~~~l~~~-----~~~l~vg~~~-~y~l 247 (997)
+.....+|+|++++|.+|+|... +|...+++ . ..+.+....|. ++.||||+.+ +|.+
T Consensus 111 -----------~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~ 179 (302)
T smart00036 111 -----------GKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDV 179 (302)
T ss_pred -----------CCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeE
Confidence 11336789999999999999765 67777763 2 22333333443 5689999997 9999
Q ss_pred EEecC--Ccceee---ecCCCCCCCC-ceEEcCCCCeEEEEeCCeEEEEccCC-Ccccc-ccccCCCCCeEEEeCcEEEE
Q 043572 248 FSCVT--GQSGVI---FTLPDVSCPP-MLKLLSKEQKVLLLVDNVGVFVDAHG-QPVGG-SLVFRKSPDAVGELSMYVVV 319 (997)
Q Consensus 248 idl~~--g~~~~l---~~~~~~~~~p-~i~~~~~~~e~Ll~~~~~g~fv~~~G-~~~r~-~i~w~~~P~~i~~~~PYll~ 319 (997)
+++.+ +...+. |........| .+..+++ +|||||+++.|+|||.+| +.+|. .+.|+..|.+++|.+|||++
T Consensus 180 ~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~-~e~Llc~~~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~~~pyll~ 258 (302)
T smart00036 180 VQFHESLVSKEDLSLPFLSEETSLKPISVVQVPR-DEFLLCYDEFGVFVNLYGKRRSRNPILHWEFMPESFAYHSPYLLA 258 (302)
T ss_pred EEEeecccccccccccccccccccCceEEEEECC-CeEEEEECcEEEEEeCCCCccccceEEEcCCcccEEEEECCEEEE
Confidence 99964 221111 0011112134 4555664 599999999999999999 67775 79999999999999999999
Q ss_pred EECCeEEEEecCCCceEEEEec
Q 043572 320 LRGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 320 ~~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
+.++.||||++.++.++|+|+.
T Consensus 259 ~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 259 FHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred EcCCcEEEEECCCCceEEEEec
Confidence 9999999999999999999986
No 7
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=99.88 E-value=1.4e-22 Score=189.35 Aligned_cols=109 Identities=34% Similarity=0.636 Sum_probs=104.4
Q ss_pred HHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCcEEEcCCCc
Q 043572 863 VRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESL 942 (997)
Q Consensus 863 ~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~ 942 (997)
++||+++++.|||.+||+.||++|+|+.+++||.++++.+.+++++.++.+++.+++..+.+.+..+.+++++.|++++.
T Consensus 1 l~lL~~~~~~ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~v~i~~~~~ 80 (109)
T PF10367_consen 1 LELLNEHGSRLDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELVKLRSRSVVITESTK 80 (109)
T ss_pred ChhHHhccccCCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCceEEECCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred CccccCccCCccEEEcCCCeEEEeccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
|++|+|+|++++|++|||||+||++|.++
T Consensus 81 C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 81 CSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred ccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 99999999999999999999999999864
No 8
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-21 Score=222.58 Aligned_cols=268 Identities=15% Similarity=0.226 Sum_probs=183.2
Q ss_pred cccccCCCCCCCccceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-cCCCcce
Q 043572 16 SQFDLSHYSRSSPIRSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-VADSPVE 92 (997)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~ 92 (997)
..|.+.+..-....+++++.|+..| |+.||+||..| +|+-....+.+ +|.+.+. +.+..|.
T Consensus 842 ~~ft~~~~~~~Ff~~~nkvn~v~~~dsgr~ll~~T~kg-lYis~~k~~~~---------------~f~kpI~~l~~~nIS 905 (1175)
T COG5422 842 LWFTSFPICDQFFSTTNKVNPVPLYDSGRKLLTGTNKG-LYISNRKDNVN---------------RFNKPIDLLQEPNIS 905 (1175)
T ss_pred hheeeccchhheeeccceecceeeccCCCeEEEeccce-eEEEEeccCcc---------------cccccHHHHhcCCcc
Confidence 4455544333344567899998876 56899999999 44333333221 1222221 3567899
Q ss_pred EEEeecccCcEEEEecCCeEEEeecCccccccc--cc---cccc-eEEEEeecccCCccccccccccccccccccCCccc
Q 043572 93 SIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKK--LG---FLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTG 166 (997)
Q Consensus 93 qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~--~~---~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (997)
||.|+++.+.++. |+|++||-++|+-.+.... .. ..-| +++|. +++|.+-..++.+|+...
T Consensus 906 Qi~vieey~lmll-lsdk~LY~~pl~vid~~~~~~~kksr~~~~hvsffk------~G~C~gk~lv~~~kS~~~------ 972 (1175)
T COG5422 906 QIIVIEEYKLMLL-LSDKKLYSCPLDVIDASTEENVKKSRIVNGHVSFFK------QGFCNGKRLVCAVKSSSL------ 972 (1175)
T ss_pred eeeehhhhhHHHH-hhcCeeecCccchhhhhhhhhhhhhhheeceeEEEe------ecccccceEEEeeeehee------
Confidence 9999999996666 9999999999987654321 11 1222 33333 345555444444443221
Q ss_pred chhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeC-Ce------EEEEEeEecCCcceEEEEeCCEEEE
Q 043572 167 QRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVN-GS------FVILKEIQCMDGVKTMVWLNDSIIV 239 (997)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~-~~------~~~~kei~~~~~~~~l~~~~~~l~v 239 (997)
...+.|.- -..+|+.+. +. ....+|+.+|..+.++.|+.+.|||
T Consensus 973 ---------------------------~~~l~v~e--~~~~~~~~~s~n~Kk~lt~~~~~el~v~~E~~sv~Flk~KlcI 1023 (1175)
T COG5422 973 ---------------------------SATLAVIE--APLALKKNKSGNLKKALTIELSTELYVPSEPLSVHFLKNKLCI 1023 (1175)
T ss_pred ---------------------------eeeeeeec--chhhhhcccCcchhhhhhhhheEEEEecCceeeeeeeccceEE
Confidence 00111110 011111111 11 1236889999999999999999999
Q ss_pred EECCcEEEEEecCCcceeeecCCCC---------CCCCceEEcCCCCeEEEEeCCeEEEEccCCCcccc--ccccCCCCC
Q 043572 240 GTVNGYSLFSCVTGQSGVIFTLPDV---------SCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGG--SLVFRKSPD 308 (997)
Q Consensus 240 g~~~~y~lidl~~g~~~~l~~~~~~---------~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~--~i~w~~~P~ 308 (997)
|++++|.|+++++-....|+.+.+. ..+|+. .++-.+|||+|++++|+|||.+|+..|. -+.|++.|+
T Consensus 1024 gC~kgFeIvsle~l~~esLL~paD~s~~~~~~ken~kpia-i~rv~~eFLLCys~faFfVN~~Gwrkrts~i~~Weg~Pq 1102 (1175)
T COG5422 1024 GCKKGFEIVSLENLRTESLLNPADTSPLFFEKKENTKPIA-IFRVSGEFLLCYSEFAFFVNDQGWRKRTSWIFHWEGEPQ 1102 (1175)
T ss_pred eecCCceEeechhhhhHhhcCcccccHHHHhhcccCceEE-EEeeCCcEEEEecceeEEEcCcCceecccEEEEEcCccc
Confidence 9999999999998877778766542 345542 2222349999999999999999999886 589999999
Q ss_pred eEEEeCcEEEEEECCeEEEEecCCCceEEEEecC
Q 043572 309 AVGELSMYVVVLRGGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 309 ~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
.++..+|||+++.++.||||+++||+||+.|--.
T Consensus 1103 ~FalsypYIlaf~~~fIeIr~ieTgeLI~~ilg~ 1136 (1175)
T COG5422 1103 EFALSYPYILAFEPNFIEIRHIETGELIRCILGH 1136 (1175)
T ss_pred eeeeecceEEEecCceEEEEecccceeeeeeccC
Confidence 9999999999999999999999999999998533
No 9
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=99.74 E-value=3.3e-18 Score=156.39 Aligned_cols=106 Identities=32% Similarity=0.440 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcc
Q 043572 545 VDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAV 624 (997)
Q Consensus 545 vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~ 624 (997)
|||+||+||+.++ ...+.+|+|.+|+|++++++++|+++++|.+|+.||+.+|+|++||++|++++++.. +...|
T Consensus 1 VDTaLlk~Yl~~~-~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~-~~~~~--- 75 (108)
T PF10366_consen 1 VDTALLKCYLETN-PSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEED-SDEED--- 75 (108)
T ss_pred CcHHHHHHHHHhC-HHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccc-ccccc---
Confidence 6999999999995 579999999999999999999999999999999999999999999999999998421 11122
Q ss_pred cccccccccccccchhhhHHHHHHhcCCC--CCHHHHHHHHhhhh
Q 043572 625 ENDLLDGCADVMSGREVAATEASKILEES--SDEDLILQHLGWIA 667 (997)
Q Consensus 625 ~~~l~~~~~~~l~~~~~~~~~~~~~L~~~--~~~~li~~~~~wll 667 (997)
+...|+..++ ++||++. ++.++|++|+.|++
T Consensus 76 ---------~~~~~~~~~i---v~yL~~L~~~~~dLI~~~s~WvL 108 (108)
T PF10366_consen 76 ---------PFLSGVKETI---VQYLQKLGNEDLDLIFEYSDWVL 108 (108)
T ss_pred ---------ccccCchhHH---HHHHHhCChhhhHHHHHhccccC
Confidence 3345555543 5666664 78999999999985
No 10
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.62 E-value=5.8e-15 Score=144.43 Aligned_cols=132 Identities=24% Similarity=0.295 Sum_probs=119.6
Q ss_pred cCCCChhHHHHHhhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCC
Q 043572 684 INQLSPDKVIAAIDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKN 762 (997)
Q Consensus 684 ~~~l~~~~Vl~~L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 762 (997)
.+.++++.|++.+.. ..+...+.|||+++..+ ..++.+||.|+.+|++
T Consensus 5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~------------------------------ 53 (140)
T smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK------------------------------ 53 (140)
T ss_pred CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH------------------------------
Confidence 367899999998874 35679999999999875 4789999999998843
Q ss_pred CcccHHHHHHHHHHhh-cCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHH
Q 043572 763 SIFQCPVQERLQIFLQ-SSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAY 841 (997)
Q Consensus 763 ~~~~~~~r~kL~~fL~-~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~ 841 (997)
+.+.++++||+ +++.||+++++++|...+++++.++||+|+|+|++|+++++..++|++.|.+||.+..++++|
T Consensus 54 -----~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw 128 (140)
T smart00299 54 -----YDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELW 128 (140)
T ss_pred -----HCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHH
Confidence 45789999999 889999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHhcCC
Q 043572 842 MQLLDMYLDS 851 (997)
Q Consensus 842 ~~Ll~~~l~~ 851 (997)
..++++++..
T Consensus 129 ~~~~~~~l~~ 138 (140)
T smart00299 129 AEVLKALLDK 138 (140)
T ss_pred HHHHHHHHcc
Confidence 9999999875
No 11
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=99.53 E-value=1.8e-14 Score=172.43 Aligned_cols=125 Identities=16% Similarity=0.273 Sum_probs=106.0
Q ss_pred EEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCC---------CCCCCc-eEEcCCCCeEEEEeCCe
Q 043572 217 ILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD---------VSCPPM-LKLLSKEQKVLLLVDNV 286 (997)
Q Consensus 217 ~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~---------~~~~p~-i~~~~~~~e~Ll~~~~~ 286 (997)
.++|+..+..+.+++|..+.+|||..++|.++++.....+.+.++.+ ....|+ |-.+. +||++|++..
T Consensus 855 ~~~d~~~~~~~~s~~flk~k~~v~~~k~f~i~sl~~~~~~~l~~~~~~~~~~~~~~~~~kp~~ifri~--~~Fllcy~~~ 932 (1029)
T KOG4305|consen 855 GLTDFFVDSEPVSVSFLKNKLCVGCKKGFEIVSLSNKTAESLLNPADNSPLFFEKRENTKPVAIFRIS--GEFLLCYDEF 932 (1029)
T ss_pred cchhccccccchhHhHhccceeeeecCCCceeccchhhhhccCCCccchHHHHhhhccCceeEEEEec--CeEEEEecce
Confidence 35778888899999999999999999999999998666666655443 234554 33444 3999999999
Q ss_pred EEEEccCCCcccc--ccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCC
Q 043572 287 GVFVDAHGQPVGG--SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 287 g~fv~~~G~~~r~--~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++|||.+|+.+|. -+.|.+.|..++..+|||+++.++.||||+++|++++|.|.-++
T Consensus 933 ~f~vn~~G~~~~~~~~~~w~g~p~~~a~~~~yiia~~~~fIeI~~~~t~eli~~i~~~~ 991 (1029)
T KOG4305|consen 933 AFFVNDQGWRSRTSWIFLWEGEPQEFALSYPYIIAFGDNFIEIRDLETGELIQIILGQN 991 (1029)
T ss_pred EEEEcCCcceecccEEEEEcCccceeeeecceEEEecCceEEEEecccceeeEEeeccc
Confidence 9999999999886 68999999999999999999999999999999999999886554
No 12
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.42 E-value=1.4e-14 Score=142.41 Aligned_cols=133 Identities=34% Similarity=0.500 Sum_probs=115.3
Q ss_pred CCCChhHHHHHhhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCC
Q 043572 685 NQLSPDKVIAAIDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNS 763 (997)
Q Consensus 685 ~~l~~~~Vl~~L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (997)
...++..|++.+.+ ..+.....|||.++......++.+||.|+.+|++
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~------------------------------- 54 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIK------------------------------- 54 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHC-------------------------------
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHh-------------------------------
Confidence 45667788887765 3457889999999987777889999999999953
Q ss_pred cccHHHH-HHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHH
Q 043572 764 IFQCPVQ-ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYM 842 (997)
Q Consensus 764 ~~~~~~r-~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~ 842 (997)
..+ ++|++||+++..||+++++++|.+.+++++.++||+|+|+|++|+++ +..++|++.|.+||.+.+++++|.
T Consensus 55 ----~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~e~~~~~~~~~l~~ 129 (143)
T PF00637_consen 55 ----YDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAIEYAKKVDDPELWE 129 (143)
T ss_dssp ----TTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCTTTGGGCSSSHHHH
T ss_pred ----cCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHHHHHHhcCcHHHHH
Confidence 233 78999999999999999999999999999999999999999999998 778999999999999999999999
Q ss_pred HHHHHhcCCCC
Q 043572 843 QLLDMYLDSQD 853 (997)
Q Consensus 843 ~Ll~~~l~~~~ 853 (997)
.++++++..+.
T Consensus 130 ~l~~~~l~~~~ 140 (143)
T PF00637_consen 130 QLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCTSTC
T ss_pred HHHHHHHhcCc
Confidence 99999998753
No 13
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.1e-10 Score=135.78 Aligned_cols=303 Identities=16% Similarity=0.224 Sum_probs=219.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChH
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSS 601 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~ 601 (997)
...|.+||.+.|++... .-||+.|+.+|+++++..++.+|+.++|..++..+-+.|.+.++|++.-.+|..-.++.
T Consensus 1149 ~edLv~yL~MaRkk~~E----~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a 1224 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVRE----PYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFA 1224 (1666)
T ss_pred HHHHHHHHHHHHHhhcC----ccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHH
Confidence 67899999999887442 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhh------ccCchhhh
Q 043572 602 KALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIA------DINAVLAV 675 (997)
Q Consensus 602 ~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll------~~~p~~~l 675 (997)
+.-..+..+++... +.+.++.-+.. . .||-...-. +...-.|+
T Consensus 1225 ~La~TLV~LgeyQ~---------------------------AVD~aRKAns~---k-tWK~VcfaCvd~~EFrlAQiCGL 1273 (1666)
T KOG0985|consen 1225 KLASTLVYLGEYQG---------------------------AVDAARKANST---K-TWKEVCFACVDKEEFRLAQICGL 1273 (1666)
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHhhhccch---h-HHHHHHHHHhchhhhhHHHhcCc
Confidence 99888888886421 11233333221 1 233222111 11223366
Q ss_pred hhcccccccCCCChhHHHHHhhccC-hHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCc
Q 043572 676 KVLTSEKRINQLSPDKVIAAIDSKK-VEILQRYLQWLI-EDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGE 753 (997)
Q Consensus 676 ~if~~~~~~~~l~~~~Vl~~L~~~~-~~~~~~YLE~li-~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~ 753 (997)
.|... .+. -+.++.+.+... -+..+..||.-. .++. .-.+.|+|+.+|.
T Consensus 1274 ~iivh---ade--Leeli~~Yq~rGyFeElIsl~Ea~LGLERA--HMgmfTELaiLYs---------------------- 1324 (1666)
T KOG0985|consen 1274 NIIVH---ADE--LEELIEYYQDRGYFEELISLLEAGLGLERA--HMGMFTELAILYS---------------------- 1324 (1666)
T ss_pred eEEEe---hHh--HHHHHHHHHhcCcHHHHHHHHHhhhchhHH--HHHHHHHHHHHHH----------------------
Confidence 66653 111 245555544321 123344444321 1111 2456788888882
Q ss_pred cccCCCCCCCcccHHHHHHHHHHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHh-cCCHHH--HH
Q 043572 754 TRSSGYGKNSIFQCPVQERLQIFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALK-LEDSEA--AE 829 (997)
Q Consensus 754 ~~~~~~~~~~~~~~~~r~kL~~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~-l~D~~~--Ae 829 (997)
++-++|+++.|+- ++..++.++++-|++..+|.|.++||.+-..++.|.-.++.+ -.+++. -.
T Consensus 1325 -------------kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FK 1391 (1666)
T KOG0985|consen 1325 -------------KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFK 1391 (1666)
T ss_pred -------------hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHH
Confidence 3668889999987 788999999999999999999999999999999988887743 223322 22
Q ss_pred HHHhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 830 QYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 830 ~yC~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
+...++.+-++|...+++|+... |.+ +.++|.--..++|...++..+.+.-.++.+++||..+...++...+
T Consensus 1392 dii~kVaNvElyYkAi~FYl~~~----P~l--lnDlL~vL~pRlDh~r~v~~f~K~~~lpLikpyl~~vq~~Nn~avN 1463 (1666)
T KOG0985|consen 1392 DIITKVANVELYYKAIQFYLDFH----PLL--LNDLLTVLSPRLDHTRTVSIFSKAGQLPLIKPYLRAVQSLNNKAVN 1463 (1666)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC----hHH--HHHHHHhcccccCchHHHHHHHhcCCCcccHHHHHHHHhcchHHHH
Confidence 33444556689999999999863 544 7788887789999999999999999999999999988776654433
No 14
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=4e-05 Score=90.84 Aligned_cols=273 Identities=17% Similarity=0.238 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCC
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDP 622 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~ 622 (997)
..+..+|.|.|+..|. .=..|++.+++-|...+-+.++++.- .|+.+...+|+-+.-| +...+.+
T Consensus 872 ~a~hnAlaKIyIDSNN--nPE~fLkeN~yYDs~vVGkYCEKRDP--~lA~vaYerGqcD~el---I~vcNeN-------- 936 (1666)
T KOG0985|consen 872 PATHNALAKIYIDSNN--NPERFLKENPYYDSKVVGKYCEKRDP--HLACVAYERGQCDLEL---INVCNEN-------- 936 (1666)
T ss_pred hHHHhhhhheeecCCC--ChHHhcccCCcchhhHHhhhhcccCC--ceEEEeecccCCcHHH---HHhcCch--------
Confidence 4566789999998774 33578888888899999888877543 3455555566654432 1111110
Q ss_pred cccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchh------hhhhcccccccCCCChhHH----
Q 043572 623 AVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVL------AVKVLTSEKRINQLSPDKV---- 692 (997)
Q Consensus 623 ~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~------~l~if~~~~~~~~l~~~~V---- 692 (997)
..-..-++||-+..|.+|+-+ .|.+.+|-. .++.-. .++-||+.|
T Consensus 937 ------------------SlfK~~aRYlv~R~D~~LW~~---VL~e~n~~rRqLiDqVv~tal----~E~~dPe~vS~tV 991 (1666)
T KOG0985|consen 937 ------------------SLFKSQARYLVERSDPDLWAK---VLNEENPYRRQLIDQVVQTAL----PETQDPEEVSVTV 991 (1666)
T ss_pred ------------------hHHHHHHHHHHhccChHHHHH---HHhccChHHHHHHHHHHHhcC----CccCChHHHHHHH
Confidence 001123466655566665222 233444422 111111 234455444
Q ss_pred HHHhhccChHHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHH
Q 043572 693 IAAIDSKKVEILQRYLQWLIEDQDS--DDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQ 770 (997)
Q Consensus 693 l~~L~~~~~~~~~~YLE~li~~~~~--~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 770 (997)
-.|+...-|...+..||.+|.+... ....+.|.|+. .++ +..|
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL-------tAi----------------------------kad~ 1036 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL-------TAI----------------------------KADR 1036 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH-------HHh----------------------------hcCh
Confidence 2355544467889999999975432 23455565532 222 3678
Q ss_pred HHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcC
Q 043572 771 ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLD 850 (997)
Q Consensus 771 ~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~ 850 (997)
.+.++|+..=.+||...+-.++-..+|++|..-+|.|-..+..|+..++...+..+.|-+|+.+...+.+|.+|.+.=|.
T Consensus 1037 trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1037 TRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQ 1116 (1666)
T ss_pred HHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred CCCCCchhHHHHH-HHHHhccCCCCHHHHhhhCCCCcchhhhHHHHH
Q 043572 851 SQDGKEPMFKAAV-RLLHNHGESLDPLQVLETLSPDMPLQLASDTIL 896 (997)
Q Consensus 851 ~~~~~~~~~~~~~-~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~ 896 (997)
.. .+..|+ .++. ..+.-+-.+|++.-...-.-.++-.||.
T Consensus 1117 ~~-----~v~dAieSyik-adDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1117 GG-----LVKDAIESYIK-ADDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred cC-----chHHHHHHHHh-cCCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 53 222222 3332 2222233556666555555555555554
No 15
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=4.1e-05 Score=89.98 Aligned_cols=144 Identities=23% Similarity=0.296 Sum_probs=105.2
Q ss_pred HHHHHHHhhhhcc-CchhhhhhcccccccCCCChhHHHH-HhhccChHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHHH
Q 043572 657 DLILQHLGWIADI-NAVLAVKVLTSEKRINQLSPDKVIA-AIDSKKVEILQRYLQWLIEDQDSDDTQFHTLY-ALSLAKS 733 (997)
Q Consensus 657 ~li~~~~~wll~~-~p~~~l~if~~~~~~~~l~~~~Vl~-~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L-~~lyi~~ 733 (997)
++..+|+..|..+ |-+.|+.--+.- ...++|..|+. ||+.....-+..|||.|+... -...-|+.| +..|++
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~t--I~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~g--la~~dhttlLLncYiK- 443 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIET--IGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIK- 443 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH--cccCChHHHHHHhcCHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHH-
Confidence 4456666666643 555665554431 34567777765 666666667889999998742 234445554 334543
Q ss_pred HHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCC----CCChHHHHhhccCCCchHHHHHHHHhhc
Q 043572 734 AIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSD----LYDPEDVLDLIEGSELWLEKAILYRKLG 809 (997)
Q Consensus 734 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~----~yd~~~~L~~~~~~~l~~e~~~Ll~klg 809 (997)
+ ..-.||.+|++... .+|.+.++++|.+.++..+.-+|-.|-+
T Consensus 444 ----l-----------------------------kd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 444 ----L-----------------------------KDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred ----h-----------------------------cchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 1 23568889998866 8899999999999999888888888999
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCc
Q 043572 810 QETLVLQILALKLEDSEAAEQYCAEIGRP 838 (997)
Q Consensus 810 ~h~eAL~il~~~l~D~~~Ae~yC~~~~~~ 838 (997)
.|+.+|+++++.++++++|..|-....-+
T Consensus 491 ~he~vl~ille~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 491 KHEWVLDILLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cCHHHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence 99999999999999999999999876533
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.15 E-value=0.0034 Score=67.39 Aligned_cols=236 Identities=16% Similarity=0.175 Sum_probs=136.7
Q ss_pred eeeeeEEeecC--CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDCQ--VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~~--~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++... +.|+.|+.+|.+..|....... ..... ....+|..+...|..+.++++-.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--------------~~~~~---~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------LRTLK---GHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--------------EEEEe---cCCcceeEEEECCCCCEEEEEcC
Confidence 35688887654 6899999999999998875431 00011 14557889999998876666444
Q ss_pred CCeEEEeecCcccccccccccc-ceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLK-GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~k-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|++..-++........ .+..++..+
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------------------ 103 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSP------------------------------------------------ 103 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcC------------------------------------------------
Confidence 8999999987643322221111 233333211
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~l~~~~ 262 (997)
+ ...++++. ...+.+|.....+ ....+. ..+.+.++.|.. ..++.|. .....++|+.++.....+...
T Consensus 104 ----~-~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 104 ----D-GRILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred ----C-CCEEEEecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 0 12344444 5678888776432 222332 344678999886 3466666 678889999877655555422
Q ss_pred CCCCCCceEEcCCCCeEEEEe-CCeEEEEccC-CCcccccc-ccCCCCCeEEEeC--cEEEEEE-CCeEEEEecCCCceE
Q 043572 263 DVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAH-GQPVGGSL-VFRKSPDAVGELS--MYVVVLR-GGKMELYHKKSGICV 336 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i-~w~~~P~~i~~~~--PYll~~~-~~~ieI~~~~~~~lv 336 (997)
... -..+...++++.++++. ++...++|.. |.+.. .+ .....+..+.+.. .++++.. ++.|.|+++.++..+
T Consensus 177 ~~~-i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 177 TGE-VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred ccc-cceEEECCCcCEEEEecCCCcEEEEECCCCceec-chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 111 11122223333555554 4555556654 33332 22 2233445555554 3444445 789999999988888
Q ss_pred EEEe
Q 043572 337 QAVT 340 (997)
Q Consensus 337 Q~i~ 340 (997)
+.+.
T Consensus 255 ~~~~ 258 (289)
T cd00200 255 QTLS 258 (289)
T ss_pred EEcc
Confidence 8876
No 17
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=97.97 E-value=0.00012 Score=71.10 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=86.9
Q ss_pred CCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCC--ceecccccCCCcEEEEEcCCeEEEEeecCHHHHHH
Q 043572 306 SPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQ--CIATDEECGAGKLLVVATPTKVICYQKVPSEEQIK 383 (997)
Q Consensus 306 ~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~--~i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~~qi~ 383 (997)
.|.+++....|++.+.++.|.|.+..+++.|..-.+... .|+ .++.+.. .+.+|+.|++.||.+.....+..+.
T Consensus 35 ~p~si~lT~~H~llL~~~~l~~vn~L~~~vV~e~~~~~~-~~~~~gl~~D~~---~~t~W~ys~~~I~ei~i~~E~r~vW 110 (147)
T PF05131_consen 35 PPLSIALTEFHLLLLYSDRLIAVNRLNNKVVFEESLLET-GGKILGLCRDPS---SNTFWLYSSNSIFEIVINNEDRDVW 110 (147)
T ss_pred CcceEEeeceeeeEEeCCEEEEEEecCCcEEEEEEeccC-CcceeeEEEcCC---CCeEEEEeCCeeEEEEcCcchHHHH
Confidence 499999999999999999999999999999866655321 122 3555532 2579999999999999999999876
Q ss_pred H-HHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 043572 384 D-LLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLF 425 (997)
Q Consensus 384 ~-Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~ 425 (997)
+ ++++|+|++|+++|+..+ .....|...+|.++|.
T Consensus 111 k~yl~~~~fd~Al~~~~~~~-------~~~d~V~~~qa~~lf~ 146 (147)
T PF05131_consen 111 KIYLDKGDFDEALQYCKTNP-------AQRDQVLIKQADHLFQ 146 (147)
T ss_pred HHHHhcCcHHHHHHHccCCH-------HHHHHHHHHHHHHHhh
Confidence 5 889999999999997742 1245788888998875
No 18
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=97.95 E-value=3.7e-06 Score=99.42 Aligned_cols=245 Identities=16% Similarity=0.206 Sum_probs=159.3
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.++|.|++.||.|+.+||..|.-+ +..... +++++. +.++..+|+.+++..+ .|+..+|.
T Consensus 640 ~se~~~aa~~g~n~~~~t~~gl~l-ld~s~q----~k~~~~--------------i~~rrfqq~~~le~~n-~l~tis~~ 699 (953)
T KOG0587|consen 640 NSEILCAALWGVNLLVGTESGLML-LDRSGQ----GKVYPL--------------INRRRFQQMDVLEGLN-VLVTISGK 699 (953)
T ss_pred hhhHHHHHhcCcceeeccccccee-eccccC----cccCCc--------------ccchhcccccccCCcc-eeEEEecc
Confidence 358999999999999999999543 333322 222211 3678899999999999 66658886
Q ss_pred --eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc---CCccch
Q 043572 111 --CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA---NGVKVK 185 (997)
Q Consensus 111 --~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~g~~~~ 185 (997)
.+.+|.++++--. ..+.+++ .++-.+|+++ .|+-.+
T Consensus 700 ~~~~~~~y~s~~~~k---------------~l~~d~e------------------------~ek~~~~~~~~~~~~~~~~ 740 (953)
T KOG0587|consen 700 KDKLRVYYLSWLRNK---------------ILHNDPE------------------------VEKKQGWTTVGDLEGCIHY 740 (953)
T ss_pred ccccceecchHHhhh---------------hhhcCch------------------------hhhhccchhhhhhhcchhh
Confidence 8888888875310 0011100 1111223333 222221
Q ss_pred hcccccCCceEEEEEECceEEEEEEeCC---eEEEEEeEe-cCCcc--eEEEEe-CCE--EEEEECCcEEEEEecCCcce
Q 043572 186 EEEQHCRGDNVFAVIIGKRLVLIELVNG---SFVILKEIQ-CMDGV--KTMVWL-NDS--IIVGTVNGYSLFSCVTGQSG 256 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~kkki~i~~~~~~---~~~~~kei~-~~~~~--~~l~~~-~~~--l~vg~~~~y~lidl~~g~~~ 256 (997)
+. +.+...-+++++.+..+.+|-|... .|+.++.+. +...+ ..+... +++ +..|...+|.-+|.+.|...
T Consensus 741 ~~-~k~~~ik~l~is~~~s~evy~~apk~~~k~~~~~s~~~~~~~~~~~d~~~ee~~~~~v~~gs~~~~~~~~~~~~~~~ 819 (953)
T KOG0587|consen 741 KV-VKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVY 819 (953)
T ss_pred hH-HHHHHHHHhheeccccceeeecCCchHHHHHhhhhhhhhcccchhccchhhcCceEEEEecCcccccccccCCCCCC
Confidence 11 1122335789999999999999876 344434322 22222 222222 444 66677889999999999888
Q ss_pred eeecCCCC--CCCC-ceEEcC--CCCeEEEEeCCeEEEEccCCCcccc-ccccCCCCCeEEEe-CcEEEEEECCeEEEEe
Q 043572 257 VIFTLPDV--SCPP-MLKLLS--KEQKVLLLVDNVGVFVDAHGQPVGG-SLVFRKSPDAVGEL-SMYVVVLRGGKMELYH 329 (997)
Q Consensus 257 ~l~~~~~~--~~~p-~i~~~~--~~~e~Ll~~~~~g~fv~~~G~~~r~-~i~w~~~P~~i~~~-~PYll~~~~~~ieI~~ 329 (997)
++.+.... ...| ++..++ ...+.|+|+++.++.++.-|+.... ..+|-..|.++++. +--+++..++.++|++
T Consensus 820 ~v~~~~~~q~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~k~v~~~~~~~~Ss~a~~~~~n~~g~~~ka~e~~s 899 (953)
T KOG0587|consen 820 DIYLPTHIQCSITPHAIIILPNTDGMELLLCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQIMGWGEKAIEIRS 899 (953)
T ss_pred CCcCCcchhhcccceeEecCCCcchHHHhhhhhcccccccCccchHHHHHHhcCCCCCcceeeecccccccCcccceeec
Confidence 87766532 2334 333443 3467899999999999999987765 67999999998765 5577788899999999
Q ss_pred cCCCce
Q 043572 330 KKSGIC 335 (997)
Q Consensus 330 ~~~~~l 335 (997)
++++.+
T Consensus 900 ~e~~~~ 905 (953)
T KOG0587|consen 900 VETGHL 905 (953)
T ss_pred cccccc
Confidence 987543
No 19
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.00091 Score=80.80 Aligned_cols=90 Identities=9% Similarity=0.122 Sum_probs=57.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHhhccCcEEEcCCCcCccccCcc--CCccEEEcCCC
Q 043572 886 MPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDI--DARLARLEERSRHVQINDESLCDSCHARL--GTKLFAMYPDD 961 (997)
Q Consensus 886 ~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e~l--~~~~~~~~~~~~~v~I~~~~~C~vC~k~l--~~~~f~v~p~g 961 (997)
++++++++-|..++..+.++..-.+....+.+.+++ ..+++ .+...|.-.| -...|..|++++ +.++...-.||
T Consensus 1079 ~tf~D~kqlLl~~~~s~~~e~el~~~s~kii~~~~l~l~~~~r-~~~shr~~~i-ht~~c~~c~q~~~~h~~~~~Fl~wg 1156 (1206)
T KOG2079|consen 1079 MTFQDLKQLLLNVFNSYKLERELSELSQKIIEDSSLDLVQQYR-KFLSHRGWSI-HTDDCEICGQKIWAHLDPLLFLAWG 1156 (1206)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHhhccCcee-cCcchHhhhhhhhccCcchheeecc
Confidence 689999999999999988765433332223322222 22222 1112244334 347899999999 44444334499
Q ss_pred eEEEeccccccCcccCC
Q 043572 962 TIVCYKCYRRQGESTSI 978 (997)
Q Consensus 962 ~~~H~~C~~~~~~~~~~ 978 (997)
|+-|+.|..... ..||
T Consensus 1157 h~qh~qc~~~~d-~~c~ 1172 (1206)
T KOG2079|consen 1157 HVQHHQCMISVD-LKCP 1172 (1206)
T ss_pred chhhHHHHHHHh-hcCC
Confidence 999999999875 4577
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.75 E-value=0.018 Score=67.36 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=158.4
Q ss_pred CccceeeeeEEeec--CCeEEEEcCC-ceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 27 SPIRSLSISPISDC--QVLIYIGTQS-GSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 27 ~~~~~~~I~ci~~~--~~~l~iGT~~-G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
.++++.+|..+... |++|.+|+.. |.|+.|+....+ |. ..|+. +-..|..+.+-|+.+.+
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-YV--------lKQQg--------H~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-YV--------LKQQG--------HSDRITSLAYSPDGQLI 365 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-ee--------eeccc--------cccceeeEEECCCCcEE
Confidence 45677899888876 9999999876 999999997643 11 11221 22369999999999955
Q ss_pred EEEecCCeEEEeecCc-cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLL-TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~-l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
.-.-.||+|.+|+..+ |=-++=..-+.||+.+....
T Consensus 366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~------------------------------------------- 402 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA------------------------------------------- 402 (893)
T ss_pred EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-------------------------------------------
Confidence 5544478999998754 10000011223333333211
Q ss_pred cchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcc--eEEEEe--CCEEEEEECCcEEE--EEecCCcce
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGV--KTMVWL--NDSIIVGTVNGYSL--FSCVTGQSG 256 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~--~~l~~~--~~~l~vg~~~~y~l--idl~~g~~~ 256 (997)
.+...++....-.+..+.... .+-.|.+..|.++ .+++.. |+.+|.|....|.| .+++||+..
T Consensus 403 ---------~g~~llssSLDGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 403 ---------RGNVLLSSSLDGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred ---------cCCEEEEeecCCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 123345555556666655543 5566778788877 455555 77899998886655 688888776
Q ss_pred eeecCCCCCCCCce-EEcCCCCeEEEE--eCCeEEEEccCCCccc-cccccCCCCCeEEEe--CcEEEEE-ECCeEEEEe
Q 043572 257 VIFTLPDVSCPPML-KLLSKEQKVLLL--VDNVGVFVDAHGQPVG-GSLVFRKSPDAVGEL--SMYVVVL-RGGKMELYH 329 (997)
Q Consensus 257 ~l~~~~~~~~~p~i-~~~~~~~e~Ll~--~~~~g~fv~~~G~~~r-~~i~w~~~P~~i~~~--~PYll~~-~~~~ieI~~ 329 (997)
+++.=-. .|+. ..++..+..|.. .|.+.-.-|--+.... .++.-.+....+.+. .-=|.+. .++.|.+++
T Consensus 472 DiLsGHE---gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 472 DILSGHE---GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ehhcCCC---CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 6654211 1221 123323344433 3444433332222111 255555555566655 2244444 466888888
Q ss_pred cCCCceEEEEecCCCCC----------------CCcee-cccccCCCcEEEEEcCCeEEEEeecCHHH
Q 043572 330 KKSGICVQAVTFGGEGG----------------GQCIA-TDEECGAGKLLVVATPTKVICYQKVPSEE 380 (997)
Q Consensus 330 ~~~~~lvQ~i~~~~~~~----------------~~~i~-~~~~~~~g~~~~v~s~~~V~~l~~~~~~~ 380 (997)
+..+..+-+|.-..... +++.. ..|+. +|+.++.+..+.-.||+-+|-..
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhh
Confidence 87765554454322111 12111 12222 45666677778888888888764
No 21
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=97.69 E-value=0.0002 Score=82.71 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=98.3
Q ss_pred CceEEEEEECceEEEEEEeCC--eEEEEEeEecCCc----ceEEEEe----CCEEEEEECCc---------EEEEEecCC
Q 043572 193 GDNVFAVIIGKRLVLIELVNG--SFVILKEIQCMDG----VKTMVWL----NDSIIVGTVNG---------YSLFSCVTG 253 (997)
Q Consensus 193 ~~~~l~Va~kkki~i~~~~~~--~~~~~kei~~~~~----~~~l~~~----~~~l~vg~~~~---------y~lidl~~g 253 (997)
+...+|-|....+.+.+|-.- .|..+|.|..|-+ +-.+... ...+|+|...+ |...++...
T Consensus 617 g~~~lc~alp~sivl~qwy~Pm~kf~l~k~i~~pl~~p~~~f~~l~~~~~e~p~vc~Gv~~~~~~~~~~v~f~~~~~~~~ 696 (829)
T KOG0576|consen 617 GGKFLCGALPTSIVLLQWYEPMNKFMLVKSISFPLPSPLSVFEMLVLPESEYPQVCVGVSAGGGTLNNEVLFHTAFLNSD 696 (829)
T ss_pred CCceeecccCceeEEeeecChHHhhhHHHhcccCCCCccchhhhccccCcccceeeeeccCCCCCCCceeEEEecccccc
Confidence 456799999999999999753 6777776554321 1222222 23499996532 222222221
Q ss_pred cceeeecCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccCCC--cccc---ccccCCCCCeEEEeCcEEEEEECCeEEEE
Q 043572 254 QSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQ--PVGG---SLVFRKSPDAVGELSMYVVVLRGGKMELY 328 (997)
Q Consensus 254 ~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~--~~r~---~i~w~~~P~~i~~~~PYll~~~~~~ieI~ 328 (997)
..-.+..-+.....|.+..+.. +-+++|++++...++.+|+ ..+. .+.++..|.++++..--+++|.+.+++.+
T Consensus 697 ~~w~~~~~~~~~~v~~v~qvdr-d~I~v~~~n~V~~v~lqG~~~~~~~~~sel~f~f~iesv~~~~gsvlaf~~hgvqgr 775 (829)
T KOG0576|consen 697 SSWDIEAAGETLPVPQVTQVDR-DTILVLFENMVKIVNLQGNGKVAVKLLSELTFDFDIESVVCLQGSVLAFWKHGVQGR 775 (829)
T ss_pred cccceeccCcccCCceeEEecc-cceEeeecCeeEEEeccCCccccccccccccccCCcceEEeeCCceecccCCcceee
Confidence 1111222111112334555553 4899999999999999997 3332 68899999999999999999999999999
Q ss_pred ecCCCceEEEEe
Q 043572 329 HKKSGICVQAVT 340 (997)
Q Consensus 329 ~~~~~~lvQ~i~ 340 (997)
++.+.++.|.|.
T Consensus 776 ~l~S~~vtqei~ 787 (829)
T KOG0576|consen 776 SLTSNEVTQEIQ 787 (829)
T ss_pred eccchHHHHHHH
Confidence 999988877764
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.11 Score=59.87 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred eeeEEeecCCe--EEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-C
Q 043572 33 SISPISDCQVL--IYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC-D 109 (997)
Q Consensus 33 ~I~ci~~~~~~--l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~-d 109 (997)
-|.||+.+... ++-+++|-.+-++..+..=. ...-|-+ +..-|-||..=|.-..-.++-| |
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa------------~~qtfeG----H~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA------------CEQTFEG----HEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCcee------------eeeEEcC----cceEEEEEEecCCCccceeeeecc
Confidence 58888888764 44455555555666664322 1112222 4557889998888654555333 9
Q ss_pred CeEEEeecCcccccccc-ccccceEEEEeec
Q 043572 110 QCLFLTDSLLTQPLKKL-GFLKGISVIAKRI 139 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~ 139 (997)
++|.+|++-+-.|..++ +-.|||+++..-+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT 193 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEecc
Confidence 99999999775554443 4578888887643
No 23
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.24 E-value=0.07 Score=56.74 Aligned_cols=227 Identities=14% Similarity=0.157 Sum_probs=139.1
Q ss_pred cceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC--cEEEE
Q 043572 29 IRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG--KVLLL 106 (997)
Q Consensus 29 ~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~--~lLv~ 106 (997)
.....|+|+++.+..+.=|++|-++..|.......- ..++. ....|+-+..-+... .||-+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~ql-------------g~ll~----HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQL-------------GILLS----HAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhhh-------------cceec----cccceEEEEecCCcchhheeee
Confidence 345799999999999999999999999999865421 11111 233466666665553 58887
Q ss_pred ecCCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
-.||.+.+|+-...+.+..+..-+| |+.++++|.
T Consensus 104 sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS--------------------------------------------- 138 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS--------------------------------------------- 138 (362)
T ss_pred cCCCcEEEEEcCCeEEeeeecccccccceeEecCC---------------------------------------------
Confidence 7789999999877665554433333 777777651
Q ss_pred hcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECCcEEEEEecCCcceeeecCCC
Q 043572 186 EEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVNGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~~y~lidl~~g~~~~l~~~~~ 263 (997)
+..-|.|.....+.++.+-.++-.... .+...+..+.|. |+..+|+.++...++-+++.. +|....
T Consensus 139 -------~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~ 206 (362)
T KOG0294|consen 139 -------GKLALSVGGDQVLRTWNLVRGRVAFVL--NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIE 206 (362)
T ss_pred -------CceEEEEcCCceeeeehhhcCccceee--ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhh
Confidence 223466677777888777655222211 234455667887 566888888888888765432 332222
Q ss_pred CCCCCceEEcCCCCeEEEEeCCe-EEEEccC-CCccccccccCCCC---CeEE-EeCc---EEEEEE-CCeEEEEecCC
Q 043572 264 VSCPPMLKLLSKEQKVLLLVDNV-GVFVDAH-GQPVGGSLVFRKSP---DAVG-ELSM---YVVVLR-GGKMELYHKKS 332 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~~~~-g~fv~~~-G~~~r~~i~w~~~P---~~i~-~~~P---Yll~~~-~~~ieI~~~~~ 332 (997)
.+-++.++.+...++++++-|+- .-+.|.+ +.+. ..+...+ ..++ |..| ||+..+ ++.|-|-.+..
T Consensus 207 ~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~---~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 207 NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL---TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ccccceeeeecCCceEEEecCCceEEEeccCCCccc---eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 23456677776666777876653 3334443 2221 2333333 2334 4432 666554 57888887764
No 24
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0065 Score=71.66 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=83.9
Q ss_pred HHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCccccc
Q 043572 548 LLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVEND 627 (997)
Q Consensus 548 ~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~ 627 (997)
.++.+|+++++ ..|.+||+..++++++.+.+++.+.+.|+++++|..+-|++.+||.+...--. |
T Consensus 612 k~I~LYAEyDr-k~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~--------d------ 676 (846)
T KOG2066|consen 612 KQIELYAEYDR-KKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELR--------D------ 676 (846)
T ss_pred HHHHHHHHHhH-hhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhh--------C------
Confidence 36677999987 69999999999999999999999999999999999999999999998875221 1
Q ss_pred ccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhh--cccccccCCCChhHHHHHhhc
Q 043572 628 LLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKV--LTSEKRINQLSPDKVIAAIDS 698 (997)
Q Consensus 628 l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~i--f~~~~~~~~l~~~~Vl~~L~~ 698 (997)
+..+++|.++..|-+|+..-....++ -|+-.-.+ ++ ..++|-.|+..+..
T Consensus 677 ---------------ie~AIefvKeq~D~eLWe~LI~~~ld-kPe~~~~ll~i~-----~~~dpl~ii~kip~ 728 (846)
T KOG2066|consen 677 ---------------IEKAIEFVKEQDDSELWEDLINYSLD-KPEFIKALLNIG-----EHEDPLLIIRKIPD 728 (846)
T ss_pred ---------------HHHHHHHHHhcCCHHHHHHHHHHhhc-CcHHHHHHHHhh-----hcccHHHHHhcCCC
Confidence 22456777777787763333333333 34433333 22 24777778777743
No 25
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.10 E-value=0.0029 Score=61.56 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCCh
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGMS 600 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~ 600 (997)
...+..||+..-+... ....+.|.|+.+|++.++ ..+.+|++ ..+..|++.+...+.+++.+++.+.+|.+.|+|
T Consensus 23 ~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~~-~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~ 98 (140)
T smart00299 23 LEELIPYLESALKLNS---ENPALQTKLIELYAKYDP-QKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNF 98 (140)
T ss_pred HHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHCH-HHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCH
Confidence 4567777776533321 235788999999999876 46677777 778999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 043572 601 SKALAIWRV 609 (997)
Q Consensus 601 ~~AL~il~~ 609 (997)
.+|++++.+
T Consensus 99 ~~Al~~~l~ 107 (140)
T smart00299 99 KDAIVTLIE 107 (140)
T ss_pred HHHHHHHHH
Confidence 999999886
No 26
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.10 E-value=0.00044 Score=80.12 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=80.4
Q ss_pred eCCeEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEec--CCc---ceeeecCCCCCCCCceEEcCCCCeEEEEeCC
Q 043572 211 VNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCV--TGQ---SGVIFTLPDVSCPPMLKLLSKEQKVLLLVDN 285 (997)
Q Consensus 211 ~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~--~g~---~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~ 285 (997)
+.+.|...-.+..| .|.+........+|-.-+.|+++.++ +.. ...+++++.+..+-....++. ++++++|.+
T Consensus 1069 trd~fs~~akl~vp-ePlsFies~P~gfifa~dtfyyv~ldhqsss~vsARklm~p~~~~yp~sA~si~a-nelllaYQn 1146 (1265)
T KOG0976|consen 1069 TRDRFSRTAKLKVP-EPLSFIESEPYGFIFAFDTFYYVELDHQSSSGVSARKLMDPPNPRYPGSAISIGA-NELLLAYQN 1146 (1265)
T ss_pred cchhhhhcccccCC-CchhhhhcCcceEEEecceEEEEeecccCCCCCchhhhcCCCCCCCCcchhhccH-HHHHHHhhc
Confidence 34456655556566 44455455555333333445555554 221 234555554333222333343 489999999
Q ss_pred eEEEEccCCCcccc-ccccCCCCCeEEEeCcEEEEEECCeEEEEecCC
Q 043572 286 VGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKS 332 (997)
Q Consensus 286 ~g~fv~~~G~~~r~-~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~ 332 (997)
-|+|||..|.-.|. ++.|+..|..++|..|.+..+.++.++|+-+..
T Consensus 1147 kGifVnl~Geqsrn~siewekmp~ef~YtspilyiVhddsiei~~is~ 1194 (1265)
T KOG0976|consen 1147 KGIFVNLSGEQSRNTSIEWEKMPGEFTYTSPILYIVHDDSIEIHPISP 1194 (1265)
T ss_pred cCeEEecccccCCccccccccCCCCccccCceEEEeccCCccccccCC
Confidence 99999999998887 799999999999999999999999999987653
No 27
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=97.04 E-value=0.00022 Score=69.85 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHH
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLA 611 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~ 611 (997)
..+.|.|+.+|++.++.+.+.+|++..+..|++.+.+.+.+++.+++.+.+|.+.|+|++|++++..+.
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~ 110 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLK 110 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHc
Confidence 688999999999998767999999988889999999999999999999999999999999999744433
No 28
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.96 E-value=0.027 Score=59.73 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=104.8
Q ss_pred cccccCCCCCC--CccceeeeeEEeecCC----eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCC
Q 043572 16 SQFDLSHYSRS--SPIRSLSISPISDCQV----LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89 (997)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~I~ci~~~~~----~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (997)
-+||...-... .......|+|.-.|.. +|+=|.+||.+.++....=. ..+.++. ++.
T Consensus 66 ~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------~~~slK~---H~~ 128 (362)
T KOG0294|consen 66 HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------LLKSLKA---HKG 128 (362)
T ss_pred EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--------------Eeeeecc---ccc
Confidence 46776432111 2223468999888765 69999999999998887532 1222222 666
Q ss_pred cceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchh
Q 043572 90 PVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRL 169 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 169 (997)
+|+-|.+=|....+|-+--|+.++.|+|-... ..|+.+..+. +.-+. .+
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-----------~a~v~~L~~~-at~v~-------------w~------ 177 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR-----------VAFVLNLKNK-ATLVS-------------WS------ 177 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcCc-----------cceeeccCCc-ceeeE-------------Ec------
Confidence 79999999998866664457799999985532 2233221110 00000 00
Q ss_pred hhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC-EEEEEECCc-EEE
Q 043572 170 LQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND-SIIVGTVNG-YSL 247 (997)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~-~l~vg~~~~-y~l 247 (997)
....+++|..+++|-+|+.... ..++++..|..+.++.|... .+.||..++ ...
T Consensus 178 ----------------------~~Gd~F~v~~~~~i~i~q~d~A--~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 178 ----------------------PQGDHFVVSGRNKIDIYQLDNA--SVFREIENPKRILCATFLDGSELLVGGDNEWISL 233 (362)
T ss_pred ----------------------CCCCEEEEEeccEEEEEecccH--hHhhhhhccccceeeeecCCceEEEecCCceEEE
Confidence 0124578899999999998763 45567777777888888864 588886664 445
Q ss_pred EEecC
Q 043572 248 FSCVT 252 (997)
Q Consensus 248 idl~~ 252 (997)
.|.++
T Consensus 234 ~D~ds 238 (362)
T KOG0294|consen 234 KDTDS 238 (362)
T ss_pred eccCC
Confidence 56543
No 29
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.017 Score=69.15 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=112.2
Q ss_pred CCCCCccceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCC----------------------------C
Q 043572 23 YSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTP----------------------------S 74 (997)
Q Consensus 23 ~~~~~~~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~----------------------------~ 74 (997)
.+++.-+....|.|++.+.+.+..||+++.+..|.+++........++..+ .
T Consensus 48 ~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 48 EPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred CCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 444444467799999999999999999999999999876644222111110 0
Q ss_pred ccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccc
Q 043572 75 QQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNS 154 (997)
Q Consensus 75 ~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~ 154 (997)
....+.++ -.+.||.++..-|+.+.|.|+-|||+|++|++.+......++.+..++.|-..
T Consensus 128 ~s~~~~lr---gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s---------------- 188 (933)
T KOG1274|consen 128 SSQEKVLR---GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILS---------------- 188 (933)
T ss_pred cchheeec---ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccccc----------------
Confidence 00111222 15679999999999998888888999999999876544444433332222200
Q ss_pred cccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCC--eEEEEEeEecCCcceEEEE
Q 043572 155 VSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SFVILKEIQCMDGVKTMVW 232 (997)
Q Consensus 155 ~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~~~~kei~~~~~~~~l~~ 232 (997)
.++...+|+-+++ ..+++.+++.|.+|...+- .|+. +.-........++|
T Consensus 189 --------------------------~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 189 --------------------------RICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQW 240 (933)
T ss_pred --------------------------ceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheee-cccccccceEEEEE
Confidence 0011122222222 4567788999999987654 2332 22112233567777
Q ss_pred e--CCEEEEE-ECCcEEEEEecC
Q 043572 233 L--NDSIIVG-TVNGYSLFSCVT 252 (997)
Q Consensus 233 ~--~~~l~vg-~~~~y~lidl~~ 252 (997)
. |..|.-+ .+++..+.|.++
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCCcEEeeeccCCcEEEEeccc
Confidence 7 4456666 445788888774
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.82 E-value=0.5 Score=50.27 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=109.9
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTST 165 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (997)
++.+|..+...|+.+.++++-.||.+.+|++..-.+...... ...+..+...+
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------------- 61 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-------------------------- 61 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC--------------------------
Confidence 567899999999988666644489999999875432211110 01111111110
Q ss_pred cchhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC--EEEEEE
Q 043572 166 GQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND--SIIVGT 241 (997)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~--~l~vg~ 241 (997)
++ ..++++. ...+.+|.+..+ ...+++.. ...+.++.|..+ .++.+.
T Consensus 62 --------------------------~~-~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 112 (289)
T cd00200 62 --------------------------DG-TYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSS 112 (289)
T ss_pred --------------------------CC-CEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEec
Confidence 11 1244443 667888888764 22233333 236788999863 455565
Q ss_pred -CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe--CCeEEEEccC-CCccccccccC-CCCCeEEEeCc-
Q 043572 242 -VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGELSM- 315 (997)
Q Consensus 242 -~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~~P- 315 (997)
.....++|+.++.....+... ........+..++.++++. ++...++|.. |.+.. .+.-. .....+.+...
T Consensus 113 ~~~~i~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 189 (289)
T cd00200 113 RDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA-TLTGHTGEVNSVAFSPDG 189 (289)
T ss_pred CCCeEEEEECCCcEEEEEeccC--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce-eEecCccccceEEECCCc
Confidence 678889999866554444421 1112222333334666654 5566666654 44332 22222 23455555544
Q ss_pred -EEEEEE-CCeEEEEecCCCceEEEE
Q 043572 316 -YVVVLR-GGKMELYHKKSGICVQAV 339 (997)
Q Consensus 316 -Yll~~~-~~~ieI~~~~~~~lvQ~i 339 (997)
++++.. ++.|.|+++.++..++.+
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecch
Confidence 555444 788999999988888777
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.82 E-value=0.84 Score=49.84 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=69.3
Q ss_pred EEeEecCCcceEEEEe--CCEEEEEE--CCcEEEEEecCCcceeeecCCC-----CCCCCceEEcCCCCeEE-EEe--CC
Q 043572 218 LKEIQCMDGVKTMVWL--NDSIIVGT--VNGYSLFSCVTGQSGVIFTLPD-----VSCPPMLKLLSKEQKVL-LLV--DN 285 (997)
Q Consensus 218 ~kei~~~~~~~~l~~~--~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~-----~~~~p~i~~~~~~~e~L-l~~--~~ 285 (997)
...+.....+.++.|. +..++++. .....++|+.++.....++... ....|.-..+..++.++ ++. ++
T Consensus 150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 3334445566777776 34566664 4578999998886543332211 12233222333333443 332 33
Q ss_pred eEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCCCceEEEEecCC
Q 043572 286 VGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 286 ~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
....+|.. |...+ .+.-...|..+.+. ..+|++-. .+.|.|+++.+++.+++|++..
T Consensus 230 ~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 230 RVAVVDAKTYEVLD-YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred eEEEEECCCCcEEE-EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc
Confidence 34445543 33221 22113446666664 34776542 6789999999999999998754
No 32
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.81 E-value=0.031 Score=66.28 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=107.8
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCC
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQ 110 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~ 110 (997)
..-.|+..|||..+||++.|.+-.|+...+-. +.+|-+ .+.++.+|.-+.+ ...|+++|+- ++|
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~-------------r~sf~~-~~ah~~~V~gla~-D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH-------------RKSFGD-SPAHKGEVTGLAV-DGTNRLLVSAGADG 515 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCee-------------eccccc-CccccCceeEEEe-cCCCceEEEccCcc
Confidence 44567889999999999999999999975431 111100 0126789999875 4566677722 368
Q ss_pred eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 111 CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
.+.+|+.....++.++.---+.+.+..+
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~iv~h---------------------------------------------------- 543 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGIVYH---------------------------------------------------- 543 (910)
T ss_pred eEEEEecCCcceeeeeccCCCcceeeee----------------------------------------------------
Confidence 9999998775543322111111111110
Q ss_pred cCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCCC
Q 043572 191 CRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVS 265 (997)
Q Consensus 191 ~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~ 265 (997)
..+..++++. .=+|.+|.... .+.+|++. ..+.+..++|.. .+|+.|.. ....+.|+-||..++-+.++.
T Consensus 544 -r~s~l~a~~~ddf~I~vvD~~t--~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~-- 618 (910)
T KOG1539|consen 544 -RVSDLLAIALDDFSIRVVDVVT--RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS-- 618 (910)
T ss_pred -ehhhhhhhhcCceeEEEEEchh--hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC--
Confidence 0011122232 23455554432 34556665 456788999885 45888865 678899999999888887764
Q ss_pred CCCceEEcCCCCeEEEEe
Q 043572 266 CPPMLKLLSKEQKVLLLV 283 (997)
Q Consensus 266 ~~p~i~~~~~~~e~Ll~~ 283 (997)
++.-..+++++.||.+.
T Consensus 619 -~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 619 -PCTSLSFSPNGDFLATV 635 (910)
T ss_pred -cceeeEECCCCCEEEEE
Confidence 12234455566777663
No 33
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.64 E-value=2.9 Score=53.57 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=55.7
Q ss_pred ChhHHHHHHhhcC--ChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHH
Q 043572 586 HLRTLAFLYASKG--MSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHL 663 (997)
Q Consensus 586 ~~~~L~~ly~~~~--~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~ 663 (997)
+...++.=|.+++ ++++||...+++.... ...+.++++||.-+.|.+.+++.+
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~-------------------------~~~ae~alkyl~fLvDvn~Ly~~A 868 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREED-------------------------PESAEEALKYLCFLVDVNKLYDVA 868 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcC-------------------------hHHHHHHHhHheeeccHHHHHHHH
Confidence 4456666788888 9999999999988541 123567888988888888888887
Q ss_pred hhhhccCchhhhhhcccccccCCCChhHHHHHhhc
Q 043572 664 GWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDS 698 (997)
Q Consensus 664 ~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~ 698 (997)
.=+. |-+.++ +... ..+.||..-++||++
T Consensus 869 LG~Y--Dl~Lal--~VAq--~SQkDPKEYLPfL~~ 897 (928)
T PF04762_consen 869 LGTY--DLELAL--MVAQ--QSQKDPKEYLPFLQE 897 (928)
T ss_pred hhhc--CHHHHH--HHHH--HhccChHHHHHHHHH
Confidence 5443 333333 3322 246788887777764
No 34
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=3.8 Score=48.48 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHH-HHHHHHhccCchhhhcccCC--CCcccHHHHHHHHHHcCChhHHHH
Q 043572 517 LLELAIRNITRYLEVSRKKELTI-LVKEGVDTL-LMYLYRALNRVHDMENLAPS--ENSCIVEELETLLDESGHLRTLAF 592 (997)
Q Consensus 517 l~~~a~~~L~~yL~~~r~~~~~~-~~~~~vDT~-Ll~~y~~~~~~~~l~~ll~~--~n~c~~e~~~~~L~~~~~~~~L~~ 592 (997)
.++.|..++..|+-..+.=.-+. -.-.--||. ++.||.+.+.-++|..+.+. +++--++...+++...|+-+..+.
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 34667777666654332211111 112233333 66777776655555555432 345556667777777777777777
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhcc-Cc
Q 043572 593 LYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADI-NA 671 (997)
Q Consensus 593 ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~-~p 671 (997)
-|.+.++...|+..-..|.+-. .+.+.++-.+-.+--.||.+|+..+++. +.
T Consensus 874 a~Lr~s~pkaAv~tCv~LnQW~---------------------------~avelaq~~~l~qv~tliak~aaqll~~~~~ 926 (1189)
T KOG2041|consen 874 AYLRRSLPKAAVHTCVELNQWG---------------------------EAVELAQRFQLPQVQTLIAKQAAQLLADANH 926 (1189)
T ss_pred HHHhccCcHHHHHHHHHHHHHH---------------------------HHHHHHHhccchhHHHHHHHHHHHHHhhcch
Confidence 7777777777777766665421 1223333333334456788888888764 44
Q ss_pred hhhhhhcccccccCCCChhHHHHHhhc
Q 043572 672 VLAVKVLTSEKRINQLSPDKVIAAIDS 698 (997)
Q Consensus 672 ~~~l~if~~~~~~~~l~~~~Vl~~L~~ 698 (997)
-.+++.-..- -..+|..+++..+.+
T Consensus 927 ~eaIe~~Rka--~~~~daarll~qmae 951 (1189)
T KOG2041|consen 927 MEAIEKDRKA--GRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHhhhc--ccchhHHHHHHHHhH
Confidence 4455554321 246888888877754
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.18 E-value=1.3 Score=52.66 Aligned_cols=239 Identities=12% Similarity=0.112 Sum_probs=132.5
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. |+.+.-|.+||.+-.|+....-= -+-|-. ..+.|+-+..-...+ .+++.|
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC-------------~vTFte----Hts~Vt~v~f~~~g~-~llssS 411 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC-------------FVTFTE----HTSGVTAVQFTARGN-VLLSSS 411 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceE-------------EEEecc----CCCceEEEEEEecCC-EEEEee
Confidence 3578999864 55899999999999998875320 111111 456788888777777 555465
Q ss_pred -CCeEEEeecCccccccccc--cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 109 -DQCLFLTDSLLTQPLKKLG--FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 109 -d~~l~~~~l~~l~~~~~~~--~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
||+|++|+|..+.-.-+.+ .-.-.+++|+|+ +
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-------------------s-------------------------- 446 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-------------------S-------------------------- 446 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcC-------------------C--------------------------
Confidence 9999999997653211111 111122333322 1
Q ss_pred hcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCc-ce--EEEEeCCEEEEE-ECCcEEEEEecC--Ccceeee
Q 043572 186 EEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDG-VK--TMVWLNDSIIVG-TVNGYSLFSCVT--GQSGVIF 259 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~-~~--~l~~~~~~l~vg-~~~~y~lidl~~--g~~~~l~ 259 (997)
...+|++.....-||-|+-..=+.+--++-.+. |. ++.|.++.|.=| -.+...+.|+-+ |++.++=
T Consensus 447 --------GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 447 --------GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred --------CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 124566777776677776321122111233344 44 366667766666 455677777753 3555542
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEe-C-CeEEE--------EccCCCc----ccc---ccccC-----CCCCeEEE--eCc
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLV-D-NVGVF--------VDAHGQP----VGG---SLVFR-----KSPDAVGE--LSM 315 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~-~-~~g~f--------v~~~G~~----~r~---~i~w~-----~~P~~i~~--~~P 315 (997)
-.++ -..+...|++.|+.+++ | .+.+| -+.+|+. -|. .+.=. .+-+.+.| +..
T Consensus 519 i~sd---vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 519 IRSD---VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred eccc---eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 2221 11233335566777764 3 34444 1122321 111 12111 12233333 355
Q ss_pred EEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 316 YVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 316 Yll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+|++-. .+.|-||++.++.++|...++.
T Consensus 596 ~IlAgG~sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 596 CILAGGESNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred EEEecCCcccEEEEECchhheeeeEEecc
Confidence 888764 6889999999999999887654
No 36
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.17 E-value=2.6 Score=45.93 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=71.5
Q ss_pred CceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC--cEEEEEecCCcceeeecCCCCCCCCceEEcCCCC
Q 043572 202 GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN--GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQ 277 (997)
Q Consensus 202 kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~--~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~ 277 (997)
.+.+.+|..... ..+..+.....+.++.|. +..++++... ....+|..++........+ ..|....+..++
T Consensus 94 ~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg 168 (300)
T TIGR03866 94 DNLVTVIDIETR--KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADG 168 (300)
T ss_pred CCeEEEEECCCC--eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC---CCccEEEECCCC
Confidence 355666666543 333444444456778887 3456666543 3556787766554333332 234333444344
Q ss_pred eEE-EEe--CCeEEEEccC-CCccccccccC--------CCCCeEEEe--CcEEEEE--ECCeEEEEecCCCceEEEEec
Q 043572 278 KVL-LLV--DNVGVFVDAH-GQPVGGSLVFR--------KSPDAVGEL--SMYVVVL--RGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 278 e~L-l~~--~~~g~fv~~~-G~~~r~~i~w~--------~~P~~i~~~--~PYll~~--~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
..| +.. ++...++|.. |...+ .+.+. ..|..+.+. ..++++. ..+.+.|+++.++..++.+..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 247 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV 247 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe
Confidence 544 443 4555566654 33322 22221 135556655 3465443 356899999999888877643
No 37
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.65 Score=53.31 Aligned_cols=210 Identities=13% Similarity=0.169 Sum_probs=124.1
Q ss_pred ecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
+..+-+++|++..+..+..--...|++.|++.+.-
T Consensus 143 lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp--------------------------------------------- 177 (566)
T KOG2315|consen 143 LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP--------------------------------------------- 177 (566)
T ss_pred hhcceEEEEecCCccceeeeeeccceeeEEecCCC---------------------------------------------
Confidence 56788999999887644333336788888876510
Q ss_pred cccccCCceEEEEEEC------ceEEEEEEeCCeE---EEEEeEecCCcceEEEEe--CCE-EEEEEC---C--------
Q 043572 187 EEQHCRGDNVFAVIIG------KRLVLIELVNGSF---VILKEIQCMDGVKTMVWL--NDS-IIVGTV---N-------- 243 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~k------kki~i~~~~~~~~---~~~kei~~~~~~~~l~~~--~~~-l~vg~~---~-------- 243 (997)
....+||.+. ..+.||.+....+ ...|.+.-.+.| .|.|. |.. ||++.. +
T Consensus 178 ------~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 178 ------EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred ------CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCcccccc
Confidence 1123444332 3578888873322 223555444444 67788 333 666633 1
Q ss_pred -cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC---CeEEEEccCCCccccccccCCCCCeEEEeCc---E
Q 043572 244 -GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD---NVGVFVDAHGQPVGGSLVFRKSPDAVGELSM---Y 316 (997)
Q Consensus 244 -~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~---~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P---Y 316 (997)
.-++++++ | -.-.++....+.-..++--++..||.+|++ ...-|.|..|++. ..+..-|.+-++..| |
T Consensus 251 q~Lyll~t~-g-~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 251 QTLYLLATQ-G-ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---FDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred ceEEEEEec-C-ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---EeCCCCCccceEECCCCCE
Confidence 24566665 2 223344443332222333345669999988 4567788899987 677778888888877 4
Q ss_pred EEE--E--ECCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcC---------CeEEEEeecCHH
Q 043572 317 VVV--L--RGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATP---------TKVICYQKVPSE 379 (997)
Q Consensus 317 ll~--~--~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~---------~~V~~l~~~~~~ 379 (997)
|+. | .++.|||.++.+..++-++...++ .+...+- +|..|+.|+. -.||-+.-..+.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-----t~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-----TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccCCc-----eEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 442 2 258999999999777766655443 2222111 2455555553 367777665543
No 38
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.93 E-value=0.58 Score=49.75 Aligned_cols=204 Identities=16% Similarity=0.092 Sum_probs=119.5
Q ss_pred cccccccCCCCCCCccceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc
Q 043572 14 PLSQFDLSHYSRSSPIRSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP 90 (997)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
+...|+. +-+|.- .|++++.. ++.+.-|+=||.+..|.+.......++. .. -...|
T Consensus 16 ~~kd~ev-~~pP~D-----sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka--------~~-------~~~~P 74 (347)
T KOG0647|consen 16 PNKDYEV-PNPPED-----SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA--------QQ-------SHDGP 74 (347)
T ss_pred cccceec-CCCccc-----chheeEeccccCceEEecccCCceEEEEEecCCcccchh--------hh-------ccCCC
Confidence 4455555 233433 45555543 3445589999999999998764322210 01 15678
Q ss_pred ceEEEeecccCcEEEEecCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccc
Q 043572 91 VESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQ 167 (997)
Q Consensus 91 I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (997)
|-.+.-..+..++...-|||.+.+|+|.+=++..- -..+|-|++|--
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~------------------------------ 124 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPG------------------------------ 124 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecC------------------------------
Confidence 99999889999888888999999999977433210 112233332220
Q ss_pred hhhhhccCccccCCccchhcccccCCceEEEEEEC---ceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC-C
Q 043572 168 RLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG---KRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV-N 243 (997)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k---kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~-~ 243 (997)
..+ -|+++. |.|.. |....-..+-.+.+|+.+-++......++||+. +
T Consensus 125 -------------------------~~~-~cl~TGSWDKTlKf--WD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 125 -------------------------MNY-QCLVTGSWDKTLKF--WDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred -------------------------CCc-ceeEecccccceee--cccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 011 133332 33333 443344566677899999999999999999965 6
Q ss_pred cEEEEEecCCcceeeecCC-CCCCCCceEEcCCCCeEEEEeC--CeEEEEccCCCc
Q 043572 244 GYSLFSCVTGQSGVIFTLP-DVSCPPMLKLLSKEQKVLLLVD--NVGVFVDAHGQP 296 (997)
Q Consensus 244 ~y~lidl~~g~~~~l~~~~-~~~~~p~i~~~~~~~e~Ll~~~--~~g~fv~~~G~~ 296 (997)
+..+++|+++.+.---.-+ -+-+.-+|+.+.+.+-|+|++= ..+++.=.+|++
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 8999999866432111000 0011224555555567788753 234443335555
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.90 E-value=0.28 Score=55.19 Aligned_cols=144 Identities=12% Similarity=0.180 Sum_probs=98.2
Q ss_pred eeeEEeecCC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 33 SISPISDCQV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 33 ~I~ci~~~~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
-|.|.+.... -++-|+-||.+-.|......+. ...+. .--||+.+..+|... +++ .|+
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~------------v~eln-----hg~pVe~vl~lpsgs-~ia-sAg 215 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR------------VVELN-----HGCPVESVLALPSGS-LIA-SAG 215 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCce------------eEEec-----CCCceeeEEEcCCCC-EEE-EcC
Confidence 4666665433 5889999999999988654210 12221 456999999999988 777 676
Q ss_pred C-eEEEeecCccc-cccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 Q-CLFLTDSLLTQ-PLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~-~l~~~~l~~l~-~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
| .+.+|+|..-- .+.. ..-.|-||+.++..
T Consensus 216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s----------------------------------------------- 248 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS----------------------------------------------- 248 (487)
T ss_pred CCeEEEEEecCCceehhhhhcccceEEEEEeec-----------------------------------------------
Confidence 5 99999986311 1111 11345555555421
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEE
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFS 249 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lid 249 (997)
++...+..+..+.+.+|..++ ++.+.....|.++.+|+... ..+++|..++-..+-
T Consensus 249 -----~~~rLlS~sLD~~VKVfd~t~--~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 249 -----DSTRLLSGSLDRHVKVFDTTN--YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred -----CCceEeecccccceEEEEccc--eEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 223456778889999999654 78877888999999999885 459999887665554
No 40
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.90 E-value=0.003 Score=47.88 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=31.3
Q ss_pred cCccccCccC-CccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 942 LCDSCHARLG-TKLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 942 ~C~vC~k~l~-~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.|++|...+. ...++..||||+||..|+... ....||++|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999995 466888999999999999875 244687653
No 41
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.89 E-value=0.31 Score=51.95 Aligned_cols=236 Identities=18% Similarity=0.210 Sum_probs=134.7
Q ss_pred EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEee
Q 043572 37 ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTD 116 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~ 116 (997)
+..||..|.+|+.+|.+..|....... .+.+. -.-+||+.+.--++..+||-+-.|..+.+|+
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~i--------------ar~ls---aH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFRI--------------ARMLS---AHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccch--------------hhhhh---ccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 446899999999999999998875431 11111 1566999999888888777766789999999
Q ss_pred cCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceE
Q 043572 117 SLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNV 196 (997)
Q Consensus 117 l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 196 (997)
+..-.|...+..-..|.....++. .....
T Consensus 94 l~~gs~l~rirf~spv~~~q~hp~---------------------------------------------------k~n~~ 122 (405)
T KOG1273|consen 94 LLKGSPLKRIRFDSPVWGAQWHPR---------------------------------------------------KRNKC 122 (405)
T ss_pred ccCCCceeEEEccCccceeeeccc---------------------------------------------------cCCeE
Confidence 976555443322222211112221 12223
Q ss_pred EEEEECceEEEEEEeCCeEEEE-E--eEecCCcceEEEE--eCCEEEEEECCc-EEEEEecCCcceeeecCCC-CCCCCc
Q 043572 197 FAVIIGKRLVLIELVNGSFVIL-K--EIQCMDGVKTMVW--LNDSIIVGTVNG-YSLFSCVTGQSGVIFTLPD-VSCPPM 269 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~~~~~~-k--ei~~~~~~~~l~~--~~~~l~vg~~~~-y~lidl~~g~~~~l~~~~~-~~~~p~ 269 (997)
++..++..-.+..+++.....+ + +..+...+....| .|+.|+.|+.++ +.++|..|-....-|.+.. .+.+.+
T Consensus 123 va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I 202 (405)
T KOG1273|consen 123 VATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI 202 (405)
T ss_pred EEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE
Confidence 4444556666666665433322 1 1111112222223 367899998775 6667877665555566554 344556
Q ss_pred eEEcCCCCeEEEE-eCCeEEEEc--------cCCCccc--c------ccccCCCCCeEEEeCcEEEEEECC--eEEEEec
Q 043572 270 LKLLSKEQKVLLL-VDNVGVFVD--------AHGQPVG--G------SLVFRKSPDAVGELSMYVVVLRGG--KMELYHK 330 (997)
Q Consensus 270 i~~~~~~~e~Ll~-~~~~g~fv~--------~~G~~~r--~------~i~w~~~P~~i~~~~PYll~~~~~--~ieI~~~ 330 (997)
+.+.. ++.|++. +|...-.++ .+|.+.. + .++|..- .+.-..-||++-+.. .+.|-.-
T Consensus 203 ~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c--cfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 203 IVSRK-GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC--CFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred EEecc-CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe--eecCCccEEEeccccceeEEEEec
Confidence 66665 2244443 344333332 2344431 1 3567532 122245699987754 5666667
Q ss_pred CCCceEEEEecCC
Q 043572 331 KSGICVQAVTFGG 343 (997)
Q Consensus 331 ~~~~lvQ~i~~~~ 343 (997)
..|.||..+.-+.
T Consensus 280 ~~GsLVKILhG~k 292 (405)
T KOG1273|consen 280 SIGSLVKILHGTK 292 (405)
T ss_pred CCcceeeeecCCc
Confidence 7899999886554
No 42
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.88 E-value=1 Score=50.52 Aligned_cols=161 Identities=12% Similarity=0.135 Sum_probs=98.0
Q ss_pred eeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|+..+.. -|.++.-+|.+-.|.+++..+. .++... +.+.||......|.....++ .++
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------~lqS~~------l~~fPi~~a~f~p~G~~~i~-~s~ 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------KLQSIH------LEKFPIQKAEFAPNGHSVIF-TSG 277 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------hheeee------eccCccceeeecCCCceEEE-ecc
Confidence 47888887655 6999999999999999987652 222222 57789999999998874444 555
Q ss_pred C--eEEEeecCccc--cccc--cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 110 Q--CLFLTDSLLTQ--PLKK--LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 110 ~--~l~~~~l~~l~--~~~~--~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
. .++.|+|.+-+ ++.. ..+-|++..|.+.+
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-------------------------------------------- 313 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-------------------------------------------- 313 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecC--------------------------------------------
Confidence 4 88888885522 1111 11233455555432
Q ss_pred chhcccccCCceEEEEEECce-EEEEEEeCCeEEEEEeEecCCcceEEEEeCCE---EEEEECCcEEEEEecCCcceeee
Q 043572 184 VKEEEQHCRGDNVFAVIIGKR-LVLIELVNGSFVILKEIQCMDGVKTMVWLNDS---IIVGTVNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkk-i~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~---l~vg~~~~y~lidl~~g~~~~l~ 259 (997)
.+. .|+++.+.. |.+..-+.+++ +..+.+++.+..++|..+. +.+|...+..++|+.+....-.|
T Consensus 314 --------d~~-fia~~G~~G~I~lLhakT~el--i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 314 --------DSN-FIAIAGNNGHIHLLHAKTKEL--ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred --------CCC-eEEEcccCceEEeehhhhhhh--hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 111 233333332 44444443322 2334467788888888654 33334568999999876555556
Q ss_pred cCCC
Q 043572 260 TLPD 263 (997)
Q Consensus 260 ~~~~ 263 (997)
...+
T Consensus 383 ~D~G 386 (514)
T KOG2055|consen 383 VDDG 386 (514)
T ss_pred eecC
Confidence 5543
No 43
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=3.2 Score=44.61 Aligned_cols=153 Identities=19% Similarity=0.169 Sum_probs=89.5
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTG 166 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (997)
++++|..|.+-|..+..|-+-.|++|++|+|-.-... .+-...+-...|.++
T Consensus 99 H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq-g~l~~~~~pi~AfDp--------------------------- 150 (311)
T KOG1446|consen 99 HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ-GLLNLSGRPIAAFDP--------------------------- 150 (311)
T ss_pred CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc-eEEecCCCcceeECC---------------------------
Confidence 6889999999999998887677999999998532111 011111111111111
Q ss_pred chhhhhccCccccCCccchhcccccCCceEEEEEECc-eEEEEEEeC---CeEEEEEeEecC--C--cceEEEEe--CCE
Q 043572 167 QRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGK-RLVLIELVN---GSFVILKEIQCM--D--GVKTMVWL--NDS 236 (997)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kk-ki~i~~~~~---~~~~~~kei~~~--~--~~~~l~~~--~~~ 236 (997)
....++++... .|.+|.... +-|.. +.+. + ....|.|. |..
T Consensus 151 --------------------------~GLifA~~~~~~~IkLyD~Rs~dkgPF~t---f~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 151 --------------------------EGLIFALANGSELIKLYDLRSFDKGPFTT---FSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred --------------------------CCcEEEEecCCCeEEEEEecccCCCCcee---EccCCCCccceeeeEEcCCCCE
Confidence 11456777766 788887753 22333 2232 2 23666666 446
Q ss_pred EEEEECCc-EEEEEecCCcceeeecCCC-CCCCCceEEcCCCCeEEEEeC--CeEEEEcc-CCCc
Q 043572 237 IIVGTVNG-YSLFSCVTGQSGVIFTLPD-VSCPPMLKLLSKEQKVLLLVD--NVGVFVDA-HGQP 296 (997)
Q Consensus 237 l~vg~~~~-y~lidl~~g~~~~l~~~~~-~~~~p~i~~~~~~~e~Ll~~~--~~g~fv~~-~G~~ 296 (997)
|.+++..+ -.++|--+|+...-|.... .+.-|.-+.+.++.+|+++.. +...+.+. .|.+
T Consensus 202 iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 202 ILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred EEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 88887765 5678888898665554332 223455566644568888743 44445554 3443
No 44
>PTZ00421 coronin; Provisional
Probab=95.59 E-value=6.1 Score=47.03 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=53.9
Q ss_pred ceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-
Q 043572 30 RSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL- 105 (997)
Q Consensus 30 ~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv- 105 (997)
....|.|++.. ++.|+.|+.||.+..|.+........ ...+...+. -..++|..+..-|..+.+|+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHLQ---GHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-------cCcceEEec---CCCCcEEEEEeCcCCCCEEEE
Confidence 34578998864 35799999999999999875421000 000111111 15678999999887643444
Q ss_pred EecCCeEEEeecCcccc
Q 043572 106 LFCDQCLFLTDSLLTQP 122 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l~~ 122 (997)
+-.|++|.+|++..-.+
T Consensus 144 gs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 144 AGADMVVNVWDVERGKA 160 (493)
T ss_pred EeCCCEEEEEECCCCeE
Confidence 34588999999876443
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.49 E-value=2.4 Score=44.41 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=133.8
Q ss_pred eeeeEEe--ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 32 LSISPIS--DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 32 ~~I~ci~--~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
.++.+++ ++|..|.=|..++....|.+++..-- .... .+ -...-|+|+.--|...-++++-+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~----------~~~~--~~---gh~~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR----------KELV--YR---GHTDSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhh----------hhhc--cc---CCCcchhhheeCCCCCcceEEecC
Confidence 3555555 56889999999999999999876310 0000 00 12336999999988776666444
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+++++|+.-.-.|+..+....|-..++..|
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp------------------------------------------------- 116 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKGENINITWSP------------------------------------------------- 116 (313)
T ss_pred CceEEEEEeccCcEEEEeeccCcceEEEEcC-------------------------------------------------
Confidence 6699999987766665444333333333222
Q ss_pred cccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEECCcEEEEEecCCcceeeecCCCCCCC
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
++.+.++...++.|.++-.. .++.+.+...+-.+.-++|.. +.+++.+.. .|. ..++.++ +++
T Consensus 117 ---~g~~~~~~~kdD~it~id~r--~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G--------lG~-v~ILsyp--sLk 180 (313)
T KOG1407|consen 117 ---DGEYIAVGNKDDRITFIDAR--TYKIVNEEQFKFEVNEISWNNSNDLFFLTNG--------LGC-VEILSYP--SLK 180 (313)
T ss_pred ---CCCEEEEecCcccEEEEEec--ccceeehhcccceeeeeeecCCCCEEEEecC--------Cce-EEEEecc--ccc
Confidence 12222333333344444333 355555555555566666664 235555432 122 2233222 122
Q ss_pred C-----------ceEEcC-CCCeEEEEe-CCeEEEEccCC-Ccccc--ccccCCCCCeEEEeCcEEEEEEC-CeEEEEec
Q 043572 268 P-----------MLKLLS-KEQKVLLLV-DNVGVFVDAHG-QPVGG--SLVFRKSPDAVGELSMYVVVLRG-GKMELYHK 330 (997)
Q Consensus 268 p-----------~i~~~~-~~~e~Ll~~-~~~g~fv~~~G-~~~r~--~i~w~~~P~~i~~~~PYll~~~~-~~ieI~~~ 330 (997)
| ++..++ ++.-|.++. |...=.-|.+- -+.|. .+.|+-.-.++.+..-||-..++ -.|.|-.+
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEec
Confidence 2 223332 222333432 22222223222 13342 57888777788888889987775 57999999
Q ss_pred CCCceEEEEecCCCC
Q 043572 331 KSGICVQAVTFGGEG 345 (997)
Q Consensus 331 ~~~~lvQ~i~~~~~~ 345 (997)
+||.-+-.|+..++.
T Consensus 261 etGd~~~eI~~~~~t 275 (313)
T KOG1407|consen 261 ETGDRVWEIPCEGPT 275 (313)
T ss_pred ccCCeEEEeeccCCc
Confidence 999999999988753
No 46
>PTZ00420 coronin; Provisional
Probab=95.47 E-value=8.4 Score=46.48 Aligned_cols=130 Identities=9% Similarity=0.100 Sum_probs=67.3
Q ss_pred ECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEE-CCcEEEEEecCCcceeeecCCCCCCCC--ce--EEc
Q 043572 201 IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPP--ML--KLL 273 (997)
Q Consensus 201 ~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p--~i--~~~ 273 (997)
..+.|.+|.+..+. ....+..++.+.+++|. |..++.|+ .+...++|+.++....-+.--. +... .+ ..+
T Consensus 146 ~DgtIrIWDl~tg~--~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~-g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEK--RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD-GGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCc--EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc-CCceeEEEEeeeE
Confidence 45678888876653 22344456778999997 44465564 4579999999876543332211 1111 11 112
Q ss_pred CCCCeEEEE--eCC----eEEEEccC--CCccccccccCCCCC--eEEEeCc----EEEEEECCeEEEEecCCCc
Q 043572 274 SKEQKVLLL--VDN----VGVFVDAH--GQPVGGSLVFRKSPD--AVGELSM----YVVVLRGGKMELYHKKSGI 334 (997)
Q Consensus 274 ~~~~e~Ll~--~~~----~g~fv~~~--G~~~r~~i~w~~~P~--~i~~~~P----Yll~~~~~~ieI~~~~~~~ 334 (997)
+.++.++++ ++. ...+.|.. +.+.. ++.....+. .-.++.+ |+.+-.++.|.++.+.++.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceE-EEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 233455554 232 23444543 23321 222222222 2234433 3334457889999987764
No 47
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.45 E-value=2.7 Score=49.92 Aligned_cols=289 Identities=13% Similarity=0.105 Sum_probs=153.6
Q ss_pred ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 30 RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 30 ~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
-..+.||++..+..+.+|++.|.|+.|+-..+.- .+ .++ -.+..|+-...+...+.+.++-+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------------~~-~~~--~~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------------RK-LKN--EGATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhh--------------hc-ccc--cCccceEEEEEecchhHhhhhhcC
Confidence 3468999999999999999999999998765431 01 111 02344555555655554554333
Q ss_pred CCeEEEeecCcccccccc---cccc--c--eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 109 DQCLFLTDSLLTQPLKKL---GFLK--G--ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~---~~~k--g--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
.|.|.+|.+..=.|-+.+ ...| + |+..++... |
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~----------------------------------------~ 136 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN----------------------------------------G 136 (726)
T ss_pred CceEEeehhhccCCCcceeeccccccCCceEEEEEeccc----------------------------------------c
Confidence 458899988773332221 1112 3 444443221 1
Q ss_pred ccchhcccccCCceEEEEEEC-ceEEEEEEeC-CeEE-EEEe-EecCCcceEEEEeCCEEEEEECCcEEEEEecCCccee
Q 043572 182 VKVKEEEQHCRGDNVFAVIIG-KRLVLIELVN-GSFV-ILKE-IQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~-~~~~-~~ke-i~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~ 257 (997)
. +++++-. -||.+.+++. ..|. ..++ ...+..|..+......+.|++-..-.+++++.++...
T Consensus 137 ~-------------k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE~eti~Q 203 (726)
T KOG3621|consen 137 M-------------KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQTEAETITQ 203 (726)
T ss_pred c-------------EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhheeecchhHHHH
Confidence 1 1222211 1223333332 1111 1223 3356678888888888999988888888887655333
Q ss_pred eecCCCCCCCCceEE-cCC----CCeEEEEe--CCeEEEEccCCCccc-------------cccccCC--C---------
Q 043572 258 IFTLPDVSCPPMLKL-LSK----EQKVLLLV--DNVGVFVDAHGQPVG-------------GSLVFRK--S--------- 306 (997)
Q Consensus 258 l~~~~~~~~~p~i~~-~~~----~~e~Ll~~--~~~g~fv~~~G~~~r-------------~~i~w~~--~--------- 306 (997)
+=.-+..+..+.-+. +++ ..-+|+|. +.----+|..|...+ +.|...+ .
T Consensus 204 IG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~ 283 (726)
T KOG3621|consen 204 IGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSG 283 (726)
T ss_pred hcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCC
Confidence 211111111111111 111 12344441 111111233332110 0111111 1
Q ss_pred ------CCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEEeecCHHH
Q 043572 307 ------PDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEE 380 (997)
Q Consensus 307 ------P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~~ 380 (997)
+.....+.-.++++++-+|.|....+. |++--... +.-|....+++ +.+|++.-++.+..+.......
T Consensus 284 ~q~ls~~k~~~l~~~~vLa~te~Giyv~d~~~~---~v~l~se~--~~DI~dVs~~~-neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 284 TQHLSLSKSSTLHSDRVLAWTEVGIYVFDSNNS---QVYLWSEG--GHDILDVSHCG-NEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred ccccccceeEEeecceEEEeecceEEEEEeccc---eEEEeecC--CCceeEEeecC-ceEEEEecCCceeEEEeehhHH
Confidence 123344455799999999999988874 44443321 23344443343 3577777778888888888999
Q ss_pred HHHHHHhcCChHHH
Q 043572 381 QIKDLLRKKDFKEA 394 (997)
Q Consensus 381 qi~~Ll~~~~~eeA 394 (997)
.++.|+..|.+-.+
T Consensus 358 ~l~~l~~~G~~m~~ 371 (726)
T KOG3621|consen 358 KLESLCRCGKEMFV 371 (726)
T ss_pred HHHHHHhhchhhhh
Confidence 99999999865543
No 48
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.27 E-value=5.9 Score=43.54 Aligned_cols=135 Identities=13% Similarity=0.232 Sum_probs=80.8
Q ss_pred ECceEEEEEEeCCeEEEEEeEecCC--cceEEEEeCCE-EEEE---ECCcEEEEEecC--CcceeeecCC----CCCCCC
Q 043572 201 IGKRLVLIELVNGSFVILKEIQCMD--GVKTMVWLNDS-IIVG---TVNGYSLFSCVT--GQSGVIFTLP----DVSCPP 268 (997)
Q Consensus 201 ~kkki~i~~~~~~~~~~~kei~~~~--~~~~l~~~~~~-l~vg---~~~~y~lidl~~--g~~~~l~~~~----~~~~~p 268 (997)
.-+||.+|.+.++.+....+..+++ .|+.|.|..+. +++. -.+....+..+. |+...|=.++ +-.-.+
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 4578999999988777766644443 67999999643 4444 234555555554 4433332221 111111
Q ss_pred --ceEEcCCCCeEEEEeC----CeEEE-EccCCCcccccccc---CCC-CCeEEEe--CcEEEEEEC--CeEEEEecC--
Q 043572 269 --MLKLLSKEQKVLLLVD----NVGVF-VDAHGQPVGGSLVF---RKS-PDAVGEL--SMYVVVLRG--GKMELYHKK-- 331 (997)
Q Consensus 269 --~i~~~~~~~e~Ll~~~----~~g~f-v~~~G~~~r~~i~w---~~~-P~~i~~~--~PYll~~~~--~~ieI~~~~-- 331 (997)
....+..++.||.++| .+++| |+..|...+ .+.| .+. |+.+.+. .-||++..+ +.|.|+.+.
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~-~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLE-LVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEE-EEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 2223345679999876 46666 887765443 2222 233 8777665 559999874 578888765
Q ss_pred CCceE
Q 043572 332 SGICV 336 (997)
Q Consensus 332 ~~~lv 336 (997)
||.|-
T Consensus 324 TG~L~ 328 (346)
T COG2706 324 TGRLT 328 (346)
T ss_pred CceEE
Confidence 56554
No 49
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.19 E-value=1 Score=47.50 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=98.2
Q ss_pred eeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccC-CCcceEEEeeccc-CcEEEE-e
Q 043572 33 SISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVA-DSPVESIFVLDDV-GKVLLL-F 107 (997)
Q Consensus 33 ~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~qi~vl~~~-~~lLv~-l 107 (997)
-+.|++.. +.++.-|+.|-++..|+.-..-.+. ..+ -+ +.=|.++...|.. +-.+|. -
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t--------------~~~---~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT--------------IHE---DSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeecccEEEE--------------Eec---CCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 44555532 3467778888887777776543211 111 13 5568999999986 434441 2
Q ss_pred cCCeEEEeecCccccccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.|++|.+|+|..++..+. ++...-++..++.++
T Consensus 170 ~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD---------------------------------------------- 203 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD---------------------------------------------- 203 (315)
T ss_pred CCceEEEEccCCcchhhccccccccEEEEEECCC----------------------------------------------
Confidence 278999999998875443 345555666665431
Q ss_pred cccccCCceEEEEEECc--eEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE--EEEEECCcEEEEEecCCcceeeecCC
Q 043572 187 EEQHCRGDNVFAVIIGK--RLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS--IIVGTVNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kk--ki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~--l~vg~~~~y~lidl~~g~~~~l~~~~ 262 (997)
++ +|....| +++++.+..++- +..+.-.+.|.+++|..+. ||.|+..+..|.|++++....-+.++
T Consensus 204 ------Gs--lcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 204 ------GS--LCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred ------CC--EEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 21 3444444 355555555432 3334345678999999765 99999999999999988765544444
No 50
>PTZ00420 coronin; Provisional
Probab=95.00 E-value=4.4 Score=48.84 Aligned_cols=82 Identities=10% Similarity=-0.034 Sum_probs=53.5
Q ss_pred eeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE-
Q 043572 31 SLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL- 106 (997)
Q Consensus 31 ~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~- 106 (997)
...|.|++.. ++.|+.|+.||.+..|.+........ ....+...+. -...+|..|..-|....+|++
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------~i~~p~~~L~---gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------EIKDPQCILK---GHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc------ccccceEEee---cCCCcEEEEEECCCCCeEEEEE
Confidence 3578998875 45789999999999999865321000 0000111111 145689999999987756553
Q ss_pred ecCCeEEEeecCccc
Q 043572 107 FCDQCLFLTDSLLTQ 121 (997)
Q Consensus 107 l~d~~l~~~~l~~l~ 121 (997)
-.|++|.+|++..-+
T Consensus 145 S~DgtIrIWDl~tg~ 159 (568)
T PTZ00420 145 GFDSFVNIWDIENEK 159 (568)
T ss_pred eCCCeEEEEECCCCc
Confidence 348899999987643
No 51
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=1.3 Score=47.39 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=91.8
Q ss_pred CCCCccceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 24 SRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 24 ~~~~~~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
+|.-.|++.++. --.++|++++=||.|.+|.+..... ..++. ...||..+...++.. +
T Consensus 11 pP~d~IS~v~f~---~~~~~LLvssWDgslrlYdv~~~~l-------------~~~~~-----~~~plL~c~F~d~~~-~ 68 (323)
T KOG1036|consen 11 PPEDGISSVKFS---PSSSDLLVSSWDGSLRLYDVPANSL-------------KLKFK-----HGAPLLDCAFADEST-I 68 (323)
T ss_pred CChhceeeEEEc---CcCCcEEEEeccCcEEEEeccchhh-------------hhhee-----cCCceeeeeccCCce-E
Confidence 344444444543 2368899999999999999987531 12221 677999999888666 7
Q ss_pred EEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
++.-.||.|+.|++..-....-.+--+++.++...+..
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~------------------------------------------ 106 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEV------------------------------------------ 106 (323)
T ss_pred EEeccCceEEEEEecCCcceeeccCCCceEEEEeeccC------------------------------------------
Confidence 77678999999999763221112233455555432210
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC-CcEEEEEecCC
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g 253 (997)
...+.-.-.++|.++.-.. -...-.+..+..|-+|...|+.|+||+. ....++|+.+-
T Consensus 107 ----------~~vIsgsWD~~ik~wD~R~--~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 107 ----------GCVISGSWDKTIKFWDPRN--KVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred ----------CeEEEcccCccEEEEeccc--cccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 0111112223444432221 0111112335577899999999999855 58899999743
No 52
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.93 E-value=7.3 Score=42.83 Aligned_cols=138 Identities=10% Similarity=0.083 Sum_probs=84.5
Q ss_pred ceEEEEEEeC--CeEEEEEeEecCCcc-eEEEEeC--CEEEEEE--CCcEEEEEecC-Ccceeee---cCCCC-------
Q 043572 203 KRLVLIELVN--GSFVILKEIQCMDGV-KTMVWLN--DSIIVGT--VNGYSLFSCVT-GQSGVIF---TLPDV------- 264 (997)
Q Consensus 203 kki~i~~~~~--~~~~~~kei~~~~~~-~~l~~~~--~~l~vg~--~~~y~lidl~~-g~~~~l~---~~~~~------- 264 (997)
-.+.-|+|.. +++..+.+...++.+ ..++... ..+++|. ...+.++-+++ |...+.. ...+.
T Consensus 64 ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 64 GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcccc
Confidence 3688899986 578888777676655 7777774 3577772 34677777743 5443332 11111
Q ss_pred CCCCceEEcCCCCeEEEEe----CCeEEEEccCCCcccc---ccccCCCCCeEEEeCc----EEEEEECCeEEEEecCC-
Q 043572 265 SCPPMLKLLSKEQKVLLLV----DNVGVFVDAHGQPVGG---SLVFRKSPDAVGELSM----YVVVLRGGKMELYHKKS- 332 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~----~~~g~fv~~~G~~~r~---~i~w~~~P~~i~~~~P----Yll~~~~~~ieI~~~~~- 332 (997)
+..+..+.+..++.+|++. |.+.+|-=.+|..+.- .+.=-.-|+.|+++.. |++.-..++|.|+...+
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 1112344454455777765 4555654448876653 2322345999999844 66666689999998776
Q ss_pred -C--ceEEEEe
Q 043572 333 -G--ICVQAVT 340 (997)
Q Consensus 333 -~--~lvQ~i~ 340 (997)
| +.+|+|.
T Consensus 224 ~g~~~~lQ~i~ 234 (346)
T COG2706 224 VGKFEELQTID 234 (346)
T ss_pred CceEEEeeeec
Confidence 4 4588885
No 53
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.69 E-value=1.9 Score=48.43 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=131.6
Q ss_pred eeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCc---cccccccccccCCCcceEEEeecccCcEEEE
Q 043572 32 LSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQ---QHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
..++|++...+ .+|=++.+|+|+++.+..........+.+.... -+.+.-+ ....+-|-.+.|-++.. .|+
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgk-yla- 218 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGK-YLA- 218 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCc-EEE-
Confidence 46788887766 899999999999998865442111111000000 0011000 01234466666666655 666
Q ss_pred ec--CCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FC--DQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~--d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
.. |..+.+|+..+++++...+..+| |...|..
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr--------------------------------------------- 253 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR--------------------------------------------- 253 (479)
T ss_pred ecCCCceEEEecCcccchhhcccccccceeeeeee---------------------------------------------
Confidence 55 34888999999888765333333 2222211
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEe--CCEEEEE-ECCcEEEEEecCCcceeee
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWL--NDSIIVG-TVNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~--~~~l~vg-~~~~y~lidl~~g~~~~l~ 259 (997)
.+..........+++.+|.+... ..+..+ --++.|.++... +..++|| ....-.+..+ ..+++-+|
T Consensus 254 -------~gt~~lys~s~Drsvkvw~~~~~--s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlif 323 (479)
T KOG0299|consen 254 -------KGTSELYSASADRSVKVWSIDQL--SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIF 323 (479)
T ss_pred -------cCccceeeeecCCceEEEehhHh--HHHHHHhCCccceeeechhcccceEEeccccceeEEEec-cccceeee
Confidence 11222344456777888777653 222221 134566666655 3569999 6677788887 34555556
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEeCCeEE-----------EE--ccCCCccc-cccc---cCCCCCeEEEeCcEEEEEEC
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLVDNVGV-----------FV--DAHGQPVG-GSLV---FRKSPDAVGELSMYVVVLRG 322 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~-----------fv--~~~G~~~r-~~i~---w~~~P~~i~~~~PYll~~~~ 322 (997)
.... +..-+++.++ +++|+-++++-.+ |+ ..+|.... +++. |-.....+.+..-...+-.+
T Consensus 324 rg~~-~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 324 RGGE-GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred eCCC-CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 5442 2333555565 4488888765222 22 22333222 1222 43322222222222222234
Q ss_pred CeEEEEecCCC----ceEEEEecCCC
Q 043572 323 GKMELYHKKSG----ICVQAVTFGGE 344 (997)
Q Consensus 323 ~~ieI~~~~~~----~lvQ~i~~~~~ 344 (997)
+.|-+--+.++ ++++.+++.+.
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls~~Gf 427 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLSLVGF 427 (479)
T ss_pred CceEEEEecCCccccceeeecccccE
Confidence 56666666654 56777777664
No 54
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.61 E-value=0.024 Score=48.19 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCcCccccCccCC-----------ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 940 ESLCDSCHARLGT-----------KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 940 ~~~C~vC~k~l~~-----------~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
+..|++|..++.. ..++.-+|||.||.+|+.+- ....||+++
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4459999999932 24677789999999999853 345799765
No 55
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.58 E-value=0.02 Score=47.14 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=37.9
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~ 990 (997)
-.|++|++.+.+. ++.|+||+|...|..+. ....|| |++.+..+-+++
T Consensus 2 ~~Cpi~~~~~~~P--v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKDP--VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCCCC--EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence 3699999998874 56799999999999865 245799 999986655554
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.46 E-value=3.2 Score=45.41 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=56.7
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+=+..+ +.-|+.|+.||.+.+|.+....-. + + +-+ ...|++.=.++|+.++++..-.|
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-----------k-v-~~G----h~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-----------K-V-MSG----HNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCccee-----------e-E-ecC----CCCCcccccccCCCceEEEEecC
Confidence 445444444 446999999999999999875310 1 1 111 45578888899999999997778
Q ss_pred CeEEEeecCccccccccc
Q 043572 110 QCLFLTDSLLTQPLKKLG 127 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~ 127 (997)
|+|.+|++.+=+|.++++
T Consensus 212 gti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ceEEEEecCCCceeEEec
Confidence 999999988877765443
No 57
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.42 E-value=8.5 Score=45.55 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=134.9
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. .+.|.+|-++|.+-.|++..+-- .+++ +... ..+.|+-|.-. +.+||.-+-.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-----------~~~v-i~g~---~drsIE~L~W~-e~~RLFS~g~s 89 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-----------LEPV-IHGP---EDRSIESLAWA-EGGRLFSSGLS 89 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCce-----------eeEE-EecC---CCCceeeEEEc-cCCeEEeecCC
Confidence 478888853 55799999999999999886421 1111 1111 45679998877 45557665668
Q ss_pred CeEEEeecCccccccccccccceEE-EEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISV-IAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|.|.-|+|..+.|.-.....-|+-+ +|+++.
T Consensus 90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------------------------------ 121 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------------------------------ 121 (691)
T ss_pred ceEEEEecccCceeEEecCCCcceeEEEeCCc------------------------------------------------
Confidence 8999999999887655544444332 332221
Q ss_pred cccCCceEEEEEECceEEE-EEEeCCeEEEEEeEec-CCcceEEEEeCCE--EEEEECCc-EEEEEecCCcceeeecCCC
Q 043572 189 QHCRGDNVFAVIIGKRLVL-IELVNGSFVILKEIQC-MDGVKTMVWLNDS--IIVGTVNG-YSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i-~~~~~~~~~~~kei~~-~~~~~~l~~~~~~--l~vg~~~~-y~lidl~~g~~~~l~~~~~ 263 (997)
...++|.....++. +....+....-+-+.- -..+.+++|.++. |+-|+..+ ..+.|..+|+.--+..
T Consensus 122 -----~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~--- 193 (691)
T KOG2048|consen 122 -----NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT--- 193 (691)
T ss_pred -----cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEee---
Confidence 12244444444222 1222222221111111 2356889999653 67777776 6777776553221110
Q ss_pred CCCCCceEEcCCCCeEEEEeCCeEEEEccCCCcc-ccccccCCCCCeEEEeCcEEEEE--ECCeEEEEecCCCceEEEEe
Q 043572 264 VSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPV-GGSLVFRKSPDAVGELSMYVVVL--RGGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~-r~~i~w~~~P~~i~~~~PYll~~--~~~~ieI~~~~~~~lvQ~i~ 340 (997)
+ ..+|-.. +.+|.|+ +.+..+=.++- +.++|.+-+..+|.++|+..
T Consensus 194 ---------~-----------------~~d~l~k~~~~iVWS-----v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 194 ---------M-----------------QLDRLSKREPTIVWS-----VLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred ---------e-----------------cccccccCCceEEEE-----EEEeecCcEEEecCCceEEEEcccCcchhhhhh
Confidence 0 0112122 2367773 45555555544 34778888889999999886
Q ss_pred cCCCCCCCceecccccCCCcEEEEEc-CCeEEEEeecCHHH
Q 043572 341 FGGEGGGQCIATDEECGAGKLLVVAT-PTKVICYQKVPSEE 380 (997)
Q Consensus 341 ~~~~~~~~~i~~~~~~~~g~~~~v~s-~~~V~~l~~~~~~~ 380 (997)
.-.+.. .++... .+++.++.+. +..|..+...+-..
T Consensus 243 ~h~adV-l~Lav~---~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 243 CHDADV-LALAVA---DNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhcce-eEEEEc---CCCCeEEEccCCCceEEEEecCCcc
Confidence 644321 223221 1234444443 67777777766544
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.24 E-value=12 Score=42.33 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=81.8
Q ss_pred ECceEEEEEEeCCe--EEEEEeEecC--CcceEEEEeCC--EEEEEE--CCcEEEEEec--CCcceee-----ecCCCC-
Q 043572 201 IGKRLVLIELVNGS--FVILKEIQCM--DGVKTMVWLND--SIIVGT--VNGYSLFSCV--TGQSGVI-----FTLPDV- 264 (997)
Q Consensus 201 ~kkki~i~~~~~~~--~~~~kei~~~--~~~~~l~~~~~--~l~vg~--~~~y~lidl~--~g~~~~l-----~~~~~~- 264 (997)
..++|.+|.+.... +.....+.++ ..|+.|.|..+ .++|.. .+....+++. +|....+ .+.+-.
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 45789999998764 6666666554 46899999854 577775 4578888887 4533222 222111
Q ss_pred CCCCceEEcCCCCeEEEEeC----CeEEE-Ecc-CCCcccccccc--CCCCCeEEE--eCcEEEEEE--CCeEEEEec--
Q 043572 265 SCPPMLKLLSKEQKVLLLVD----NVGVF-VDA-HGQPVGGSLVF--RKSPDAVGE--LSMYVVVLR--GGKMELYHK-- 330 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~~----~~g~f-v~~-~G~~~r~~i~w--~~~P~~i~~--~~PYll~~~--~~~ieI~~~-- 330 (997)
...|.-..+..++.||.+.+ .+.+| +|. +|..+.-...+ -..|..+++ ..-||++.. .+.|.|+.+
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 11343344444567877743 35555 433 45554422222 234999999 566888876 568999876
Q ss_pred CCCceEEE
Q 043572 331 KSGICVQA 338 (997)
Q Consensus 331 ~~~~lvQ~ 338 (997)
.+|.|.+.
T Consensus 324 ~tG~l~~~ 331 (345)
T PF10282_consen 324 DTGKLTPV 331 (345)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEe
Confidence 47776543
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.20 E-value=15 Score=43.32 Aligned_cols=199 Identities=15% Similarity=0.068 Sum_probs=120.9
Q ss_pred CCcceEEEeecccCcEEEEecCCeEEEeecCccc--cccc-cccccceEEEEeecccCCccccccccccccccccccCCc
Q 043572 88 DSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ--PLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTS 164 (997)
Q Consensus 88 ~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~--~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (997)
.+.|....+-+....+.-+.+|+.++++...... .... .+-..+|+.++..+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~------------------------- 213 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP------------------------- 213 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-------------------------
Confidence 5678888888888854444468899999884433 1111 12233444444221
Q ss_pred ccchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEe--CCEEEEE-
Q 043572 165 TGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWL--NDSIIVG- 240 (997)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~--~~~l~vg- 240 (997)
++.+.+..+..+.|.+|....+ ...++.+ .....+.+++|. ++.|+-|
T Consensus 214 ---------------------------d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 214 ---------------------------DGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred ---------------------------CCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEec
Confidence 2334455667777888888333 2222333 234567888887 4556666
Q ss_pred ECCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCCcc--ccccccCCCC--CeEEEeC
Q 043572 241 TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQPV--GGSLVFRKSP--DAVGELS 314 (997)
Q Consensus 241 ~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~~~--r~~i~w~~~P--~~i~~~~ 314 (997)
......+.|+.+|+....+..-+.+ -....++.++.+|++ +|++..+.|..+... -..+.+...| ...+...
T Consensus 266 ~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs 343 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS 343 (456)
T ss_pred CCCcEEEEeccCCeEEEeeeccCCc--eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC
Confidence 6678999999988776666543321 123445545566665 577888888765442 2355565555 4444444
Q ss_pred c---EEEEEECC-eEEEEecCCCceEEEEec
Q 043572 315 M---YVVVLRGG-KMELYHKKSGICVQAVTF 341 (997)
Q Consensus 315 P---Yll~~~~~-~ieI~~~~~~~lvQ~i~~ 341 (997)
| |+++.+.+ .+-+.++..+..+++..-
T Consensus 344 p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 344 PNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred CCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 4 88887765 899999998877766643
No 60
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=94.12 E-value=0.14 Score=47.25 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC
Q 043572 770 QERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED 824 (997)
Q Consensus 770 r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D 824 (997)
...+..||+..+..+++.+-..+...+.+.|.+.+|..-|+|++||+++. ++.+
T Consensus 14 ~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~-~l~~ 67 (108)
T PF10366_consen 14 PSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLK-KLAD 67 (108)
T ss_pred HHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHH-HHhc
Confidence 46788999999999999999999999999999999999999999999998 4443
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.01 E-value=0.073 Score=62.54 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=45.8
Q ss_pred CeEEEEeC----CeEEEEccCCCcccc-ccccCCCCCeEEEeCcEEEEEECCeEEEEecCC
Q 043572 277 QKVLLLVD----NVGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKS 332 (997)
Q Consensus 277 ~e~Ll~~~----~~g~fv~~~G~~~r~-~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~ 332 (997)
..|++.++ .++.|++..|..+|- .+.|+ .|.++++..||.|++.-+++++.-+.-
T Consensus 1050 qrfll~sddt~lh~rkyn~trd~fs~~akl~vp-ePlsFies~P~gfifa~dtfyyv~ldh 1109 (1265)
T KOG0976|consen 1050 QRFLLESDDTFLHFRKYNDTRDRFSRTAKLKVP-EPLSFIESEPYGFIFAFDTFYYVELDH 1109 (1265)
T ss_pred cchhhhhhhhHHHHhhhcccchhhhhcccccCC-CchhhhhcCcceEEEecceEEEEeecc
Confidence 35666554 589999999998886 79999 999999999999999998888876543
No 62
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.95 E-value=6.5 Score=42.32 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=105.1
Q ss_pred eEEEeecccCcEEEEecCCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhh
Q 043572 92 ESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLL 170 (997)
Q Consensus 92 ~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 170 (997)
..+..-+-...+.|...||.|.+|++.++.+...+ .-++.++++|...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~------------------------------- 75 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR------------------------------- 75 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-------------------------------
Confidence 34444455666666667999999999998754322 3355667777532
Q ss_pred hhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECC--cEE
Q 043572 171 QKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVN--GYS 246 (997)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~--~y~ 246 (997)
++...+......++.+|....+. .++++-++.+|....|.. ...||++.. .=.
T Consensus 76 ---------------------dgr~LltsS~D~si~lwDl~~gs--~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 76 ---------------------DGRKLLTSSRDWSIKLWDLLKGS--PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred ---------------------CCCEeeeecCCceeEEEeccCCC--ceeEEEccCccceeeeccccCCeEEEEEecCCcE
Confidence 12233444556677787776654 667888899998888884 457877543 334
Q ss_pred EEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccCCCccc--cccccCCCCCeEEEeCcEEEEE-ECC
Q 043572 247 LFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVG--GSLVFRKSPDAVGELSMYVVVL-RGG 323 (997)
Q Consensus 247 lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r--~~i~w~~~P~~i~~~~PYll~~-~~~ 323 (997)
++++.+ .+..++|.++ +|+..- .--.+... .-||++- ..+
T Consensus 133 vi~~s~-~~h~~Lp~d~-----------------------------d~dln~sas~~~fdr~-------g~yIitGtsKG 175 (405)
T KOG1273|consen 133 VIDFSD-PKHSVLPKDD-----------------------------DGDLNSSASHGVFDRR-------GKYIITGTSKG 175 (405)
T ss_pred EEEecC-CceeeccCCC-----------------------------ccccccccccccccCC-------CCEEEEecCcc
Confidence 555433 2222333321 111110 00011111 2277755 467
Q ss_pred eEEEEecCCCceEEEEecCCC-CCCCceecccccCCCcEEEEEcCCeEEEEee
Q 043572 324 KMELYHKKSGICVQAVTFGGE-GGGQCIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 324 ~ieI~~~~~~~lvQ~i~~~~~-~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
.+-|++.+|.++|....+... .+-+.+++. .|..+++.+..-|.+-..
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~----~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSR----KGRFLIINTSDRVIRTYE 224 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEec----cCcEEEEecCCceEEEEe
Confidence 899999998888766655442 111223332 345555655555555443
No 63
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=7.6 Score=41.77 Aligned_cols=206 Identities=13% Similarity=0.120 Sum_probs=117.2
Q ss_pred eeeeEEe----ecCCeEEEEcCCceEEEEEeCCCCCCC-CCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEE
Q 043572 32 LSISPIS----DCQVLIYIGTQSGSLILLSLDPTAATT-LHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLL 105 (997)
Q Consensus 32 ~~I~ci~----~~~~~l~iGT~~G~ll~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv 105 (997)
..|--|+ -||+-|...+.|+.+-.|+..+.+... ++ . =+.++. +.+ +++.|..|..-|..- ..|+
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~-~----Wv~~tt-l~D---srssV~DV~FaP~hlGLklA 130 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR-R----WVRRTT-LVD---SRSSVTDVKFAPKHLGLKLA 130 (361)
T ss_pred CcEEEEEecCccccceEEEEecCCceeeeeecccccccccc-e----eEEEEE-eec---CCcceeEEEecchhcceEEE
Confidence 3555555 268899999999999999887554321 00 0 001111 121 778999999998854 2333
Q ss_pred -EecCCeEEEeecCcccccc---------ccccccc---eEEEEeecccCCccccccccccccccccccCCcccchhhhh
Q 043572 106 -LFCDQCLFLTDSLLTQPLK---------KLGFLKG---ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQK 172 (997)
Q Consensus 106 -~l~d~~l~~~~l~~l~~~~---------~~~~~kg---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 172 (997)
+-+||+|++|..++---+. .+....| -.+||+.+.. |.
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~---------------------sr-------- 181 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP---------------------SR-------- 181 (361)
T ss_pred EeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc---------------------cc--------
Confidence 2458999999987632111 1111111 1233333210 00
Q ss_pred ccCccccCCccchhcccccCCceEEEEEECc------eEEEEEEeCC--eEEEEEeEe-cCCcceEEEEeC------CEE
Q 043572 173 FGSGIKANGVKVKEEEQHCRGDNVFAVIIGK------RLVLIELVNG--SFVILKEIQ-CMDGVKTMVWLN------DSI 237 (997)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kk------ki~i~~~~~~--~~~~~kei~-~~~~~~~l~~~~------~~l 237 (997)
-....|+|+... ++.||++..+ ++.++-++. .+++|+.++|.- ..|
T Consensus 182 -------------------~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 182 -------------------MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred -------------------ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 012346777666 8999999865 566666654 456789999983 238
Q ss_pred EEEECCcEEEEEecCCcceeeecCC-----CCCCCC--ceEEcCC-CCeE-EEEeCCeEEEEccCCC
Q 043572 238 IVGTVNGYSLFSCVTGQSGVIFTLP-----DVSCPP--MLKLLSK-EQKV-LLLVDNVGVFVDAHGQ 295 (997)
Q Consensus 238 ~vg~~~~y~lidl~~g~~~~l~~~~-----~~~~~p--~i~~~~~-~~e~-Ll~~~~~g~fv~~~G~ 295 (997)
.||++.+..|+++.. ...+++.-. ...--| .+..+++ +.|+ -++.|-+|..+...|+
T Consensus 243 AvA~kDgv~I~~v~~-~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 243 AVATKDGVRIFKVKV-ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred EEeecCcEEEEEEee-ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 999999999999863 222222111 111111 1333432 2243 3667778888877765
No 64
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.65 E-value=17 Score=42.85 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=132.1
Q ss_pred eeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|+.. .|+.+.-++.+|.+..+........ ...... -....|..+..-|+...++-+-.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~--------~~~~l~-------~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSN--------LLRELS-------GHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccch--------hhcccc-------ccccceeeeEECCCCcEEEEecC
Confidence 456777554 3667777788888777666322200 000001 15668999999999884554444
Q ss_pred CCeEEEeecCccccccccccccce----EEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGI----SVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
|++|++|++.. +...+..++|. +.++.++
T Consensus 224 D~tiriwd~~~--~~~~~~~l~gH~~~v~~~~f~p--------------------------------------------- 256 (456)
T KOG0266|consen 224 DKTLRIWDLKD--DGRNLKTLKGHSTYVTSVAFSP--------------------------------------------- 256 (456)
T ss_pred CceEEEeeccC--CCeEEEEecCCCCceEEEEecC---------------------------------------------
Confidence 77999999832 21223334442 2222211
Q ss_pred hhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcce--ee
Q 043572 185 KEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSG--VI 258 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~--~l 258 (997)
.+...+.......|.++....+.... -+. ..+.+.++++.. +.|+.|. .....+.|+.+|... ..
T Consensus 257 -------~g~~i~Sgs~D~tvriWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 257 -------DGNLLVSGSDDGTVRIWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred -------CCCEEEEecCCCcEEEEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence 12223333455567888777643332 222 234677777774 3466664 567889999988743 33
Q ss_pred ecCCCCCCCC-ceEEcCCCCeEEEE-e-CCeEEEEccC-CCccccccccCCCCCeE--------EEeCcEEEEEE-CCeE
Q 043572 259 FTLPDVSCPP-MLKLLSKEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRKSPDAV--------GELSMYVVVLR-GGKM 325 (997)
Q Consensus 259 ~~~~~~~~~p-~i~~~~~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~~P~~i--------~~~~PYll~~~-~~~i 325 (997)
+.-..... | ..+.+..++.++++ + |++.-+.|.. |...+ .|...+..+ .-...|++.-. +..|
T Consensus 328 ~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 328 LSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG---TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred ccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCccee---eecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence 33222222 3 23444445566655 4 4477777765 44332 222222211 12245666544 6789
Q ss_pred EEEecCCCceEEEEecC
Q 043572 326 ELYHKKSGICVQAVTFG 342 (997)
Q Consensus 326 eI~~~~~~~lvQ~i~~~ 342 (997)
.+.++.++..+|.+...
T Consensus 404 ~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEGH 420 (456)
T ss_pred EEEeCCccchhhhhcCC
Confidence 99999999999988765
No 65
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=93.63 E-value=19 Score=44.38 Aligned_cols=228 Identities=13% Similarity=0.054 Sum_probs=127.0
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
..--|.+..|++|+...++|.+.++....+... .+++. ++..+|.-|..- .++++++-.+++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------------P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~t 77 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------------PETID---ISGELVSSIACY--SNHFLTGSEQNT 77 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------------Cchhh---ccCceeEEEeec--ccceEEeeccce
Confidence 445688888999999999999998776544210 01111 133456666654 557888777889
Q ss_pred EEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 112 LFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 112 l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
+.+|..|+.++-..+.+ +=.+...+++
T Consensus 78 v~~y~fps~~~~~iL~Rftlp~r~~~v~---------------------------------------------------- 105 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTLPIRDLAVS---------------------------------------------------- 105 (933)
T ss_pred EEEeeCCCCCccceeeeeeccceEEEEe----------------------------------------------------
Confidence 99999998765432211 1111222211
Q ss_pred cCCceEEEEEECce-EEEEEEeCC-eEEEEEeEecCCcceEEEEeC--CEEEEE-ECCcEEEEEecCCcce----eeecC
Q 043572 191 CRGDNVFAVIIGKR-LVLIELVNG-SFVILKEIQCMDGVKTMVWLN--DSIIVG-TVNGYSLFSCVTGQSG----VIFTL 261 (997)
Q Consensus 191 ~~~~~~l~Va~kkk-i~i~~~~~~-~~~~~kei~~~~~~~~l~~~~--~~l~vg-~~~~y~lidl~~g~~~----~l~~~ 261 (997)
+++ ..++.+...- |.+....+. .-+.++. ...++.++.+.. +.|.+. +.....++|+++|... .+++.
T Consensus 106 g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrg--h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 106 GSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRG--HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD 182 (933)
T ss_pred cCC-cEEEeecCceeEEEEeccccchheeecc--cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence 011 1122222221 233333332 1222232 345778888884 446666 5567999999987542 22332
Q ss_pred CCCC-CCCceEEc--CCCCeEEEE-eCCeEEEEccCCCcccccc--ccCCCCCeEEEeCc---EEEEE-ECCeEEEEecC
Q 043572 262 PDVS-CPPMLKLL--SKEQKVLLL-VDNVGVFVDAHGQPVGGSL--VFRKSPDAVGELSM---YVVVL-RGGKMELYHKK 331 (997)
Q Consensus 262 ~~~~-~~p~i~~~--~~~~e~Ll~-~~~~g~fv~~~G~~~r~~i--~w~~~P~~i~~~~P---Yll~~-~~~~ieI~~~~ 331 (997)
.+.. .+++..+- +++++|++. .++....++..|.-....+ ...+.-..+.-..| ||-+. .++.|-|-+++
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 2211 23332221 555788865 7888888998887554322 22222233333344 88865 47889999988
Q ss_pred C
Q 043572 332 S 332 (997)
Q Consensus 332 ~ 332 (997)
+
T Consensus 263 t 263 (933)
T KOG1274|consen 263 T 263 (933)
T ss_pred c
Confidence 5
No 66
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.59 E-value=19 Score=42.21 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=41.2
Q ss_pred cEEEEEcCCeEEEEeecCHHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 360 KLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 360 ~~~~v~s~~~V~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.++++-.+..|..+..-+-+-+.+..+.++++++++.+.+...--..++++ .++..+-+|-.+|..+.|++.-
T Consensus 246 ~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~----~~~~i~~fL~~~G~~e~AL~~~--- 318 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKD----QGQSIARFLEKKGYPELALQFV--- 318 (443)
T ss_dssp EEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HH----HHHHHHHHHHHTT-HHHHHHHS---
T ss_pred EEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChh----HHHHHHHHHHHCCCHHHHHhhc---
Confidence 445555677888886666677889999999999998888632211112222 2334444577778888888642
Q ss_pred CCCCcccccc
Q 043572 440 ETMQPSEVFP 449 (997)
Q Consensus 440 ~~~Dp~~l~p 449 (997)
-||..=|.
T Consensus 319 --~D~~~rFe 326 (443)
T PF04053_consen 319 --TDPDHRFE 326 (443)
T ss_dssp --S-HHHHHH
T ss_pred --CChHHHhH
Confidence 36665443
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.58 E-value=1.9 Score=48.13 Aligned_cols=133 Identities=18% Similarity=0.183 Sum_probs=82.9
Q ss_pred eeeeEEeecCCeEE--EEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDCQVLIY--IGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~~~~l~--iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
-.++|++.+.+-|+ .||.||.+-.|.+....+ ..+|-. ...||.-|..-+..- -|++-||
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~-------------~a~Fpg----ht~~vk~i~FsENGY-~Lat~ad 409 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN-------------VAKFPG----HTGPVKAISFSENGY-WLATAAD 409 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccc-------------cccCCC----CCCceeEEEeccCce-EEEEEec
Confidence 46899998855444 468999999999876542 123332 456899999766665 5554776
Q ss_pred C-eEEEeecCccccccc--cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 Q-CLFLTDSLLTQPLKK--LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~-~l~~~~l~~l~~~~~--~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
. .|.+|+|--+.-.++ +..-+++.....|.
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~----------------------------------------------- 442 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ----------------------------------------------- 442 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcC-----------------------------------------------
Confidence 5 599999865443222 22233444444332
Q ss_pred cccccCCceEEEEEECceEEEEEEeC--CeEEEEEeEecCCcceEEEEeCCE
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVN--GSFVILKEIQCMDGVKTMVWLNDS 236 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~--~~~~~~kei~~~~~~~~l~~~~~~ 236 (997)
++ ..+.++ ...+.+|.... ..|..++++.....+....|+|+.
T Consensus 443 -----SG-t~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 443 -----SG-TYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred -----CC-CeEEee-cceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 11 123333 78888887763 368888887766656566677654
No 68
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.54 E-value=0.028 Score=60.76 Aligned_cols=52 Identities=19% Similarity=0.414 Sum_probs=39.2
Q ss_pred CCcCccccCccCCc--cEEEcCCCeEEEecccc----ccCcccCCCCCCCCCccccCC
Q 043572 940 ESLCDSCHARLGTK--LFAMYPDDTIVCYKCYR----RQGESTSITGRDFKKDVLIKP 991 (997)
Q Consensus 940 ~~~C~vC~k~l~~~--~f~v~p~g~~~H~~C~~----~~~~~~~~t~~~f~~~~~~~~ 991 (997)
+--|..||..+|.. ..--.||.|+||..|+. ++....||.|+-.+....+||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpg 422 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPG 422 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCC
Confidence 34799999999964 36678999999999999 555677998885554433333
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.41 E-value=5.1 Score=51.03 Aligned_cols=73 Identities=14% Similarity=-0.055 Sum_probs=48.7
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
..|++++.. ++.|+.|+.+|.+..|.+..... . ..+ + -+..+|..+..-|..+.+|+ +-
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-----------~--~~~-~---~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----------V--TEM-K---EHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-----------E--EEe-c---CCCCCEEEEEEcCCCCCEEEEEc
Confidence 456676642 46799999999999998864321 0 111 1 15668999998875443444 34
Q ss_pred cCCeEEEeecCccc
Q 043572 108 CDQCLFLTDSLLTQ 121 (997)
Q Consensus 108 ~d~~l~~~~l~~l~ 121 (997)
.|+++.+|++..-.
T Consensus 596 ~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 596 DDGSVKLWSINQGV 609 (793)
T ss_pred CCCEEEEEECCCCc
Confidence 47899999987543
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=93.29 E-value=3.5 Score=49.73 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=55.9
Q ss_pred ccceeeeeEEe---ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEE
Q 043572 28 PIRSLSISPIS---DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVL 104 (997)
Q Consensus 28 ~~~~~~I~ci~---~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lL 104 (997)
+.+..-|+++. .|=|.+.+|.++|.+..+++....- ...|-. ....|+-|.--|..+.+.
T Consensus 156 ~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-------------v~~f~~----~~s~IT~ieqsPaLDVVa 218 (910)
T KOG1539|consen 156 KVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV-------------VYTFQE----FFSRITAIEQSPALDVVA 218 (910)
T ss_pred eccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE-------------EEEecc----cccceeEeccCCcceEEE
Confidence 34443366654 7889999999999999999986441 011111 336799999999999888
Q ss_pred EEecCCeEEEeecCc
Q 043572 105 LLFCDQCLFLTDSLL 119 (997)
Q Consensus 105 v~l~d~~l~~~~l~~ 119 (997)
|.+.+|+|.+|++..
T Consensus 219 iG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKF 233 (910)
T ss_pred EeccCceEEEEEccc
Confidence 888999999999754
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=93.17 E-value=3.4 Score=44.26 Aligned_cols=253 Identities=15% Similarity=0.084 Sum_probs=134.6
Q ss_pred CccceeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccc-cccccccccCCCcceEEEeecccCcE
Q 043572 27 SPIRSLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQH-VSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 27 ~~~~~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
++-.....+|+-. .|+.|.-|+-||.+-.++.....- .-. ...|. ..|. ....+|-.|..-.+.+++
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl-----rKD-LkYQAqd~fM----Mmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL-----RKD-LKYQAQDNFM----MMDDAVLCISFSRDSEML 278 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchh-----hhh-hhhhhhccee----ecccceEEEeecccHHHh
Confidence 3344567778664 477899999999988887764431 100 00011 1111 245689999888888855
Q ss_pred EEEecCCeEEEeecCccccccc--cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKK--LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~--~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
.-.--||++.+|.+.+-+-+-. -.-+|||++.....+.+ . + -++ +
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S---q-------i--------LS~---------------s 325 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS---Q-------I--------LSA---------------S 325 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc---h-------h--------hcc---------------c
Confidence 5544589999999866332221 13478887766432110 0 0 000 0
Q ss_pred ccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC-CcceEEEEe--CCEEEEE-ECCcEEEEEecCCccee
Q 043572 182 VKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM-DGVKTMVWL--NDSIIVG-TVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~-~~~~~l~~~--~~~l~vg-~~~~y~lidl~~g~~~~ 257 (997)
-...+.+--.+.+ +.+||+--. .-+....|. |+.|+-+ +.....+.+..+++...
T Consensus 326 -------------------fD~tvRiHGlKSG--K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 326 -------------------FDQTVRIHGLKSG--KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred -------------------ccceEEEeccccc--hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence 0111112112221 122332211 112233333 4555555 44567778877776655
Q ss_pred eecCCCCCC-CCceEEcCCC-CeEEEE-eCCeEEEEccCCCcccc-c-cccCCCCCeEEEeCc---EEEEEEC-CeEEEE
Q 043572 258 IFTLPDVSC-PPMLKLLSKE-QKVLLL-VDNVGVFVDAHGQPVGG-S-LVFRKSPDAVGELSM---YVVVLRG-GKMELY 328 (997)
Q Consensus 258 l~~~~~~~~-~p~i~~~~~~-~e~Ll~-~~~~g~fv~~~G~~~r~-~-i~w~~~P~~i~~~~P---Yll~~~~-~~ieI~ 328 (997)
-|.+.+... -..+..+|.+ +.|++| ..+..+++|.+|..+|. + =.-++--.--+...| ++.++.+ ..+.-+
T Consensus 385 Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 385 TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 565443221 1234455533 568888 45677778889998774 1 111111111233333 6766664 457778
Q ss_pred ecCCCceEEEEecCC
Q 043572 329 HKKSGICVQAVTFGG 343 (997)
Q Consensus 329 ~~~~~~lvQ~i~~~~ 343 (997)
++.+|.+-.++++..
T Consensus 465 ~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHE 479 (508)
T ss_pred EeecCceeeeeeccc
Confidence 888888888877644
No 72
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.92 E-value=19 Score=40.34 Aligned_cols=139 Identities=15% Similarity=0.214 Sum_probs=73.0
Q ss_pred CceEEEEEEeCC-eEEEE----EeEecCCcceEEEEeCC--EEEEEEC--CcEEEEEecC--CcceeeecCC---C--CC
Q 043572 202 GKRLVLIELVNG-SFVIL----KEIQCMDGVKTMVWLND--SIIVGTV--NGYSLFSCVT--GQSGVIFTLP---D--VS 265 (997)
Q Consensus 202 kkki~i~~~~~~-~~~~~----kei~~~~~~~~l~~~~~--~l~vg~~--~~y~lidl~~--g~~~~l~~~~---~--~~ 265 (997)
..+|.+|.+..+ .+... ..+.....|..+.|..+ .++|+.. +.-.++|++. |....+-.++ . .+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 477899988653 23211 11223456788888754 6888864 6788888873 3322221111 1 11
Q ss_pred -CCCceEEcCCCCeEEEEeC---C-eEEE-EccCCCccc--cccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecC--
Q 043572 266 -CPPMLKLLSKEQKVLLLVD---N-VGVF-VDAHGQPVG--GSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKK-- 331 (997)
Q Consensus 266 -~~p~i~~~~~~~e~Ll~~~---~-~g~f-v~~~G~~~r--~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~-- 331 (997)
..|.-..+..++.+|.+.+ + ..+| ++.+|.... +.+.....|..+.+. ..||++.. .+.|.|+.+.
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 1122122333456666543 2 3443 344443211 233334467777765 56888765 5789998774
Q ss_pred CCce--EEEEe
Q 043572 332 SGIC--VQAVT 340 (997)
Q Consensus 332 ~~~l--vQ~i~ 340 (997)
++.+ ++++.
T Consensus 307 ~g~l~~~~~~~ 317 (330)
T PRK11028 307 TGLLTELGRYA 317 (330)
T ss_pred CCcEEEccccc
Confidence 4544 45444
No 73
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.75 E-value=14 Score=41.46 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=83.1
Q ss_pred EEEEEE--CceEEEEEEeC-CeEEEEEeEecCCcceEEEEe--CCEEEEEE--CCcEEEEEecC-CcceeeecCCCCCCC
Q 043572 196 VFAVII--GKRLVLIELVN-GSFVILKEIQCMDGVKTMVWL--NDSIIVGT--VNGYSLFSCVT-GQSGVIFTLPDVSCP 267 (997)
Q Consensus 196 ~l~Va~--kkki~i~~~~~-~~~~~~kei~~~~~~~~l~~~--~~~l~vg~--~~~y~lidl~~-g~~~~l~~~~~~~~~ 267 (997)
.++|+. .+.|.+|.+.. +.+.....+..++.|..+.+. +..++++. .+...++|+++ |..............
T Consensus 48 ~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~ 127 (330)
T PRK11028 48 HLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEG 127 (330)
T ss_pred EEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCc
Confidence 345543 46678888863 356666667677778888888 44588775 45678888863 322222111111123
Q ss_pred CceEEcCCCCeEEEEe---CCeEEEEcc--CCCccc---c--ccccCCCCCeEEEeCc--EEEEEE--CCeEEEEecC--
Q 043572 268 PMLKLLSKEQKVLLLV---DNVGVFVDA--HGQPVG---G--SLVFRKSPDAVGELSM--YVVVLR--GGKMELYHKK-- 331 (997)
Q Consensus 268 p~i~~~~~~~e~Ll~~---~~~g~fv~~--~G~~~r---~--~i~w~~~P~~i~~~~P--Yll~~~--~~~ieI~~~~-- 331 (997)
|....+..++.++++. ++....++. .|.... . ++.=...|..++++.- |+++.. .+.|.++.+.
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 4444454444566442 244444543 344321 1 1222456888888754 888776 5889999986
Q ss_pred CC--ceEEEEe
Q 043572 332 SG--ICVQAVT 340 (997)
Q Consensus 332 ~~--~lvQ~i~ 340 (997)
++ .++|++.
T Consensus 208 ~~~~~~~~~~~ 218 (330)
T PRK11028 208 HGEIECVQTLD 218 (330)
T ss_pred CCCEEEEEEEe
Confidence 33 4577775
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.52 E-value=2.3 Score=44.22 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=91.8
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
.++|+-|..+-.|..|.+..... ++..+-+ +...|....-+-+.+.+|-+--|++|++|+.-+-
T Consensus 112 s~~lltgg~ekllrvfdln~p~A------------pp~E~~g----htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKA------------PPKEISG----HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG 175 (334)
T ss_pred chhhhccchHHHhhhhhccCCCC------------CchhhcC----CCCcceeEEEeccCceEEeeccCCceEEEEeccC
Confidence 45799999999888887765442 1233322 4557888888877777777555789999996542
Q ss_pred ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEE
Q 043572 121 QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI 200 (997)
Q Consensus 121 ~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va 200 (997)
.- |+.+-.+.. |+|-+ +..++ ..+.++
T Consensus 176 t~---------v~sL~~~s~--------------VtSlE-----------------------------vs~dG-~ilTia 202 (334)
T KOG0278|consen 176 TE---------VQSLEFNSP--------------VTSLE-----------------------------VSQDG-RILTIA 202 (334)
T ss_pred cE---------EEEEecCCC--------------Cccee-----------------------------eccCC-CEEEEe
Confidence 11 222221100 00000 00011 346667
Q ss_pred ECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE-EEEEECC--cEEEEEecCCcceeee
Q 043572 201 IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS-IIVGTVN--GYSLFSCVTGQSGVIF 259 (997)
Q Consensus 201 ~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~-l~vg~~~--~y~lidl~~g~~~~l~ 259 (997)
-...|.++.. +.|..+|++.+|-.|.+.+..-+. ++|+-.. -.+.+|-+||.-+..+
T Consensus 203 ~gssV~Fwda--ksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 203 YGSSVKFWDA--KSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cCceeEEecc--ccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 7777776554 459999999999999887776443 5555444 3455888899877776
No 75
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.46 E-value=0.07 Score=41.62 Aligned_cols=35 Identities=14% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCCcCccccCccC-CccEEEcC-CCeEEEeccccccC
Q 043572 939 DESLCDSCHARLG-TKLFAMYP-DDTIVCYKCYRRQG 973 (997)
Q Consensus 939 ~~~~C~vC~k~l~-~~~f~v~p-~g~~~H~~C~~~~~ 973 (997)
.+.+|.+||++|. ...+++-| ||..+|..|.....
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC
Confidence 5689999999995 35688888 79999999998753
No 76
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.33 E-value=14 Score=46.87 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred HHHHHHHHHHc---CChhHHHHHHhhcC--ChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHH
Q 043572 574 VEELETLLDES---GHLRTLAFLYASKG--MSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASK 648 (997)
Q Consensus 574 ~e~~~~~L~~~---~~~~~L~~ly~~~~--~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~ 648 (997)
.+.+...|..+ .+...++..|.+.+ ..+.||+...++..... + ..+.+.++
T Consensus 777 c~~vr~~l~~~~~~~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~-----~-------------------~~ad~al~ 832 (1265)
T KOG1920|consen 777 CDAVRNALERRAPDKFNLFILTSYVKSNPPEIEEALQKIKELQLAQV-----A-------------------VSADEALK 832 (1265)
T ss_pred HHHHHHHHhhcCcchhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc-----c-------------------hhHHHHHH
Confidence 34455555443 23456677777777 77888887776653110 0 01234556
Q ss_pred hcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhccChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 043572 649 ILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYAL 728 (997)
Q Consensus 649 ~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~ 728 (997)
+|..+.|.+-+++++.=+.+ -+.++.+-. ..+-||...+++|++.. .+...|-.+-|.
T Consensus 833 hll~Lvdvn~lfn~ALgtYD--l~Lal~VAq----~SqkDPkEyLP~L~el~-~m~~~~rkF~ID--------------- 890 (1265)
T KOG1920|consen 833 HLLFLVDVNELFNSALGTYD--LDLALLVAQ----KSQKDPKEYLPFLNELK-KMETLLRKFKID--------------- 890 (1265)
T ss_pred HHHhhccHHHHHHhhhcccc--hHHHHHHHH----HhccChHHHHHHHHHHh-hchhhhhheeHH---------------
Confidence 66666666666666544332 233333322 24678888888886543 122223233222
Q ss_pred HHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCCCC---------ChHHHHhh-------c
Q 043572 729 SLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLY---------DPEDVLDL-------I 792 (997)
Q Consensus 729 lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~y---------d~~~~L~~-------~ 792 (997)
-|++.|..++..-..-. ..+....++|++....| +.++-... |
T Consensus 891 ~~L~ry~~AL~hLs~~~---------------------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL 949 (1265)
T KOG1920|consen 891 DYLKRYEDALSHLSECG---------------------ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHL 949 (1265)
T ss_pred HHHHHHHHHHHHHHHcC---------------------ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHH
Confidence 13333333332210000 01223344444444333 33332222 3
Q ss_pred cCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhc
Q 043572 793 EGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEI 835 (997)
Q Consensus 793 ~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~ 835 (997)
....++++.++.|.+.|++++||.-+. .-+|+..|...+.+.
T Consensus 950 ~~~~~~~~Aal~Ye~~GklekAl~a~~-~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCGKLEKALKAYK-ECGDWREALSLAAQL 991 (1265)
T ss_pred HHhccccHHHHHHHHhccHHHHHHHHH-HhccHHHHHHHHHhh
Confidence 344567889999999999999999999 679999999888764
No 77
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.20 E-value=17 Score=38.10 Aligned_cols=86 Identities=13% Similarity=0.185 Sum_probs=59.7
Q ss_pred cccccCCCCCC--Cccce--eeeeEE--eecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCC
Q 043572 16 SQFDLSHYSRS--SPIRS--LSISPI--SDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89 (997)
Q Consensus 16 ~~~~~~~~~~~--~~~~~--~~I~ci--~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (997)
-.||+.+.+|- .+++. ..|+++ .+.|+.+|-|++||++-.+.+.... .| +..+ +++
T Consensus 64 RlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~------------~q--R~~~----~~s 125 (311)
T KOG0315|consen 64 RLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS------------CQ--RNYQ----HNS 125 (311)
T ss_pred EEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc------------cc--hhcc----CCC
Confidence 36887666662 22222 345554 4568899999999999998887522 11 1111 568
Q ss_pred cceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 90 PVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
||+.+.+=|....|+++--+|.|++|+|-+
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 999999889888777755567999999976
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=5.3 Score=46.60 Aligned_cols=210 Identities=11% Similarity=0.133 Sum_probs=125.5
Q ss_pred cccccccCCCCCCCcc---ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc
Q 043572 14 PLSQFDLSHYSRSSPI---RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP 90 (997)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
.-.++|......+..+ ....|-|++..+..+-.|+.+|.++++.+.-..... . .+. -.+..
T Consensus 240 ~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~----------~---~~~---~H~qe 303 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVV----------S---TLQ---GHRQE 303 (484)
T ss_pred eEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhh----------h---hhh---cccce
Confidence 3456674433333333 346889999888899999999999999987654311 1 111 25667
Q ss_pred ceEEEeecccCcEEEEecCCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCcccchh
Q 043572 91 VESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRL 169 (997)
Q Consensus 91 I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 169 (997)
|--+..-++...+.-...|+.+++|+....+|...+..-++ |..++..|...
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------------- 356 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------------- 356 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc---------------------------
Confidence 88899889888666555678999999977666655555444 66677666431
Q ss_pred hhhccCccccCCccchhcccccCCceEEEEEEC---ceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE--EEEEEC--
Q 043572 170 LQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG---KRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS--IIVGTV-- 242 (997)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k---kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~--l~vg~~-- 242 (997)
-.|+++.+ +.|.++.... -..++.+.....|.+|.|.... ||.+..
T Consensus 357 -------------------------~lLAsGGGs~D~~i~fwn~~~--g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 357 -------------------------GLLATGGGSADRCIKFWNTNT--GARIDSVDTGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred -------------------------CceEEcCCCcccEEEEEEcCC--CcEecccccCCceeeEEEcCCCCEEEEecCCC
Confidence 01333322 3344444433 3566777778899999999765 777632
Q ss_pred -CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCC
Q 043572 243 -NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQ 295 (997)
Q Consensus 243 -~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~ 295 (997)
+...+.+..+- ..+-...++..+-+-....++++.++. .|+..-|-+..+.
T Consensus 410 ~n~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSM--KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEecccc--ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 35566665431 111111122222222223334455443 5667777776553
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.88 E-value=14 Score=42.01 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=79.3
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeEecCC-cceEEEEe--CC-EEEEEECC-cEEEEEecCCcceeeecCCCCCCCCc
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEIQCMD-GVKTMVWL--ND-SIIVGTVN-GYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei~~~~-~~~~l~~~--~~-~l~vg~~~-~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
..|+....+.+.||++++..=.+++.+.+.+ ++.+..|. |. .||.+..+ -|+.+|+.++..+++-++.+.. ++.
T Consensus 227 lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~~ 305 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EKS 305 (514)
T ss_pred eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc-cch
Confidence 3455567888999999876333555555544 55676666 44 58888665 5677999999988886665422 344
Q ss_pred eEEc--CCCCeEEEEeCCeEEEEcc---CCCccccccccCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 270 LKLL--SKEQKVLLLVDNVGVFVDA---HGQPVGGSLVFRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 270 i~~~--~~~~e~Ll~~~~~g~fv~~---~G~~~r~~i~w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
+..+ +..+.||+.-++.|.+.=. .|.-. +++..++....+.+. .--|++.. .+.|-|.++.....+.+..-
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhh-heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 4443 2233466655544433211 12111 122223333333332 22344443 45666777766544444433
Q ss_pred CC
Q 043572 342 GG 343 (997)
Q Consensus 342 ~~ 343 (997)
.+
T Consensus 385 ~G 386 (514)
T KOG2055|consen 385 DG 386 (514)
T ss_pred cC
Confidence 33
No 80
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=91.70 E-value=2.3 Score=45.50 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=64.7
Q ss_pred cceeeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 29 IRSLSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 29 ~~~~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
+-+..+.||....+ -|.-|+.||.+-.+.+.... ...+|.+- ..+.|+.+..-.+...+|-+
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~-------------ClRrFdrA---HtkGvt~l~FSrD~SqiLS~ 324 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ-------------CLRRFDRA---HTKGVTCLSFSRDNSQILSA 324 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecch-------------HHHHhhhh---hccCeeEEEEccCcchhhcc
Confidence 45568889987655 48999999999999998653 12344442 56789999988888877774
Q ss_pred ecCCeEEEeecCccccccccccccceEEEEe
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKGISVIAK 137 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~ 137 (997)
--|.+++++.|.+-. -+...||.+.|.-
T Consensus 325 sfD~tvRiHGlKSGK---~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 325 SFDQTVRIHGLKSGK---CLKEFRGHSSYVN 352 (508)
T ss_pred cccceEEEeccccch---hHHHhcCcccccc
Confidence 557799998876532 2456788777763
No 81
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.63 E-value=18 Score=43.59 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCccceeee--eEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 26 SSPIRSLSI--SPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 26 ~~~~~~~~I--~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
+.++++.-| .|+.-+++++.+||.+|.|..|.+-..+. ....+ -+...|=.|.+.|+....
T Consensus 407 iRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l-----------~Eti~------AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 407 IRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL-----------VETIR------AHDGAIWSISLSPDNKGF 469 (888)
T ss_pred eEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh-----------hhhhh------ccccceeeeeecCCCCce
Confidence 344554433 34556788999999999999999875432 11111 145578899999998877
Q ss_pred EEEecCCeEEEeec
Q 043572 104 LLLFCDQCLFLTDS 117 (997)
Q Consensus 104 Lv~l~d~~l~~~~l 117 (997)
+-.-+|++|.+|+.
T Consensus 470 vT~saDktVkfWdf 483 (888)
T KOG0306|consen 470 VTGSADKTVKFWDF 483 (888)
T ss_pred EEecCCcEEEEEeE
Confidence 77678999999974
No 82
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=91.63 E-value=34 Score=40.35 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=46.9
Q ss_pred EEEEEEeCCeEEE--EEeEecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEE-cCCCCe
Q 043572 205 LVLIELVNGSFVI--LKEIQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKL-LSKEQK 278 (997)
Q Consensus 205 i~i~~~~~~~~~~--~kei~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~-~~~~~e 278 (997)
-.+|+...++++. +..+.++..|.+.++. .+.+++|+. ....++|..++.+.-. ...+.|.... .+++..
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCcE
Confidence 3567887776654 3567788888888877 356999965 5788999876643321 1123444333 344445
Q ss_pred EEEEeC
Q 043572 279 VLLLVD 284 (997)
Q Consensus 279 ~Ll~~~ 284 (997)
|++|.+
T Consensus 314 ~~V~s~ 319 (545)
T PF11768_consen 314 FVVGSE 319 (545)
T ss_pred EEEEcC
Confidence 556644
No 83
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=91.60 E-value=31 Score=39.90 Aligned_cols=229 Identities=13% Similarity=0.138 Sum_probs=123.7
Q ss_pred ceeeeeEEeecCC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 30 RSLSISPISDCQV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
.+-.|.+++.-.. ++.-|++|+.+-.|+ . ++ -+|..+..-+.+=|..+..-|+.+++.-+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffe-G--PP--------------FKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFE-G--PP--------------FKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEee-C--CC--------------eeeeecccccccceeeEEECCCCCeEEEe
Confidence 3346666664333 577788888654332 2 21 12222111244568999999999977777
Q ss_pred ecCCeEEEeecCccccccccc---cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FCDQCLFLTDSLLTQPLKKLG---FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~---~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
-+||++++|+-.+-+.+..+. .-|| +.|++.+. |++
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkG-sIfalsWs---PDs------------------------------------- 247 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKG-SIFALSWS---PDS------------------------------------- 247 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccc-cEEEEEEC---CCC-------------------------------------
Confidence 789999999987644332222 2233 34555431 111
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcc----eEEEEeCCEEEEEECC-cEEEEEecCCc----
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGV----KTMVWLNDSIIVGTVN-GYSLFSCVTGQ---- 254 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~----~~l~~~~~~l~vg~~~-~y~lidl~~g~---- 254 (997)
...+.+...|.+.|+....+ ...+++.+++.+ ...-|-++.|+....+ ...++|..++.
T Consensus 248 ----------~~~~T~SaDkt~KIWdVs~~--slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 248 ----------TQFLTVSADKTIKIWDVSTN--SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred ----------ceEEEecCCceEEEEEeecc--ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 12334445555556555543 333444444433 2333555543333333 23334443332
Q ss_pred --------------------------------------ceeeecCCCCCCCCceEEcC--CCCe-EEEEeCCeEEEEccC
Q 043572 255 --------------------------------------SGVIFTLPDVSCPPMLKLLS--KEQK-VLLLVDNVGVFVDAH 293 (997)
Q Consensus 255 --------------------------------------~~~l~~~~~~~~~p~i~~~~--~~~e-~Ll~~~~~g~fv~~~ 293 (997)
.-++++.+ ....|+.+. +.++ |-+..|++.-.++..
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~---h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG---HTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc---ccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 22222111 122444442 2134 445578888777765
Q ss_pred CCc-cc-cccccCCCCCeEEEeCc--EEEEEECCeEEEEecC
Q 043572 294 GQP-VG-GSLVFRKSPDAVGELSM--YVVVLRGGKMELYHKK 331 (997)
Q Consensus 294 G~~-~r-~~i~w~~~P~~i~~~~P--Yll~~~~~~ieI~~~~ 331 (997)
|+. +. ..+.....|..+++..| ++++.+.+.|.|.+-.
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 543 22 25788899999999999 8888888777776633
No 84
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=91.59 E-value=4.3 Score=45.86 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-E
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-L 106 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~ 106 (997)
--..+.|+++. |..|+-||..|.||.+.+..+.- ..++. -+=.+|+.|...-+.. .++ .
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--------------L~v~~---aHYQ~ITcL~fs~dgs-~iiTg 141 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--------------LNVLS---AHYQSITCLKFSDDGS-HIITG 141 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH--------------HHHHH---hhccceeEEEEeCCCc-EEEec
Confidence 33567888864 66899999999999999875431 11110 1345799988777666 555 3
Q ss_pred ecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
--||.|++|.+-.+........++..+.|.-+-.. +.|- +|...|+
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls-------------ITDl-----------------~ig~Gg~---- 187 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS-------------ITDL-----------------QIGSGGT---- 187 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcce-------------eEEE-----------------EecCCCc----
Confidence 33789999999776432222223333333321100 0000 0000111
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-cEEEEEec
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-GYSLFSCV 251 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-~y~lidl~ 251 (997)
..+.+-+...+.+.+|.++.+ ..+..+.+|..+.+++.. +..+++|+.. .+.++++.
T Consensus 188 ------~~rl~TaS~D~t~k~wdlS~g--~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 188 ------NARLYTASEDRTIKLWDLSLG--VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred ------cceEEEecCCceEEEEEeccc--eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 123345566777899999886 566778899999998877 3458888665 56666664
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=91.38 E-value=14 Score=39.74 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=54.1
Q ss_pred cceeeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 29 IRSLSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 29 ~~~~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
.....|.|.+.. +..++.|+-||.+..|.+...... ++.+ +..+|..|.-.+..+.++-.-
T Consensus 52 ~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~---------------~igt---h~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 52 KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED---------------QIGT---HDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred ecCCceeeeeccCCceEEEeccCceEEEEEecCCcce---------------eecc---CCCceEEEEeeccCCeEEEcc
Confidence 344567666654 458999999999999999865431 2222 677999999999999666655
Q ss_pred cCCeEEEeecCc
Q 043572 108 CDQCLFLTDSLL 119 (997)
Q Consensus 108 ~d~~l~~~~l~~ 119 (997)
.|+++.+|+.-.
T Consensus 114 WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 114 WDKTIKFWDPRN 125 (323)
T ss_pred cCccEEEEeccc
Confidence 688999998643
No 86
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=91.00 E-value=23 Score=42.15 Aligned_cols=242 Identities=10% Similarity=0.052 Sum_probs=123.5
Q ss_pred cceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 29 IRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 29 ~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
....-+.|++.+++.||=|..|+.|..-...+.+... -.+... +.+++ +......+++++.-.
T Consensus 289 ~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~--------h~~~~~------~p~~~---~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 289 LHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMD--------HRQKNL------FPASD---RVSVAPENRLLVLWK 351 (691)
T ss_pred CCcccceeeeeecceEEecceeeEEEEccccccCchh--------hhcccc------ccccc---eeecCccceEEEEec
Confidence 3446889999999999999999987654444432210 001111 12222 233444555777333
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+..+..|.+-+-.+.......+=+..+.-+.. +| +.. .=+|
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~------------nI--------s~~--------------aiSP----- 392 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE------------NI--------SCA--------------AISP----- 392 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCcc------------ce--------eee--------------ccCC-----
Confidence 77888888766432211111111111111100 00 000 0001
Q ss_pred cccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCC------cceEEEE--eCCEEEEEEC--CcEEEEEecCCcceee
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMD------GVKTMVW--LNDSIIVGTV--NGYSLFSCVTGQSGVI 258 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~------~~~~l~~--~~~~l~vg~~--~~y~lidl~~g~~~~l 258 (997)
..-.||+.+-.+..+|++.... .+++....+ ++..+.+ .++.++++.. .+.+.+++++.+...+
T Consensus 393 ----dg~~Ia~st~~~~~iy~L~~~~--~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 393 ----DGNLIAISTVSRTKIYRLQPDP--NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred ----CCCEEEEeeccceEEEEeccCc--ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 1146899999999999998753 222222222 2233333 3666666654 4667778777777777
Q ss_pred ecCCCCCCCCceEEc--CCCCeEEEEeCC--eEEEEccCCCcccccc-ccCCCCCeEEE---eCcEEEEE-ECCeEEEEe
Q 043572 259 FTLPDVSCPPMLKLL--SKEQKVLLLVDN--VGVFVDAHGQPVGGSL-VFRKSPDAVGE---LSMYVVVL-RGGKMELYH 329 (997)
Q Consensus 259 ~~~~~~~~~p~i~~~--~~~~e~Ll~~~~--~g~fv~~~G~~~r~~i-~w~~~P~~i~~---~~PYll~~-~~~~ieI~~ 329 (997)
.+.......|.|..+ .+.++++.+-+. ....+|.++...+..+ ..+..-+..++ ..+=|++. .++.+.=++
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred hccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 666554444544433 345677776443 3344677766554322 22222222222 23344433 467777777
Q ss_pred cCC
Q 043572 330 KKS 332 (997)
Q Consensus 330 ~~~ 332 (997)
++.
T Consensus 547 i~~ 549 (691)
T KOG2048|consen 547 IEA 549 (691)
T ss_pred cch
Confidence 643
No 87
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=90.86 E-value=34 Score=39.03 Aligned_cols=265 Identities=16% Similarity=0.109 Sum_probs=142.6
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|||++.. |..|..|..+|.+..|.....-. ..+. ..|.||..+.==...+.+|-.-.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~---------------~tl~---~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI---------------STLG---QHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhh---------------hhhh---ccCCceEEEEEcCCCCEEEeccCC
Confidence 578999976 78999999999999998876431 1111 378899999988888878877779
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
|+..+|+-..-. .+ +-|..+... ++ ...++
T Consensus 298 ~ttilwd~~~g~-------~~--q~f~~~s~~---------------------------------------~l--DVdW~ 327 (524)
T KOG0273|consen 298 GTTILWDAHTGT-------VK--QQFEFHSAP---------------------------------------AL--DVDWQ 327 (524)
T ss_pred ccEEEEeccCce-------EE--EeeeeccCC---------------------------------------cc--ceEEe
Confidence 999999853211 00 011111000 00 00000
Q ss_pred ccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEE-ECCcEEEEEecCCcc--------eee
Q 043572 190 HCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVG-TVNGYSLFSCVTGQS--------GVI 258 (997)
Q Consensus 190 ~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg-~~~~y~lidl~~g~~--------~~l 258 (997)
. .....+-.++-.|.+|++..++.....-- -..+|.+|.|.. ..|.-+ ....-.|.++..+.. .++
T Consensus 328 ~--~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 328 S--NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred c--CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 0 00112334555678888887644432211 345678888884 333333 234566666543321 222
Q ss_pred ecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCCCCC-eEEEe--CcEEEEE-ECCeEEEEecC
Q 043572 259 FTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKSPD-AVGEL--SMYVVVL-RGGKMELYHKK 331 (997)
Q Consensus 259 ~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~P~-~i~~~--~PYll~~-~~~~ieI~~~~ 331 (997)
+...-.+..|....... +-.|++ +|++.-..|. .|.+.- +++=...|. ++++. .-|+..- .++.|.|-+..
T Consensus 405 ~t~~wsp~g~v~~n~~~-~~~l~sas~dstV~lwdv~~gv~i~-~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNM-NLMLASASFDSTVKLWDVESGVPIH-TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred eeEeecCCCCccCCCcC-CceEEEeecCCeEEEEEccCCceeE-eeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 22211122333333322 233433 5666666664 455442 332233344 44444 3476643 46889999999
Q ss_pred CCceEEEEecCCCCCCCceecccccCCC-cEEEEEcCCeEEEEe
Q 043572 332 SGICVQAVTFGGEGGGQCIATDEECGAG-KLLVVATPTKVICYQ 374 (997)
Q Consensus 332 ~~~lvQ~i~~~~~~~~~~i~~~~~~~~g-~~~~v~s~~~V~~l~ 374 (997)
++.++|+..-.+.+ +-++ ... .| ++...+|+..|.++.
T Consensus 483 ~~~l~~s~~~~~~I---fel~-Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 483 TGKLVKSYQGTGGI---FELC-WNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred chheeEeecCCCeE---EEEE-EcC-CCCEEEEEecCCCceEEE
Confidence 99999997544421 1111 111 13 344566777777664
No 88
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=90.71 E-value=0.14 Score=37.49 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=24.6
Q ss_pred CccccCccCCccEEEcCCCeEEEecccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
|++|.+.+.+ ++++.|+||+|++.|..++
T Consensus 1 C~iC~~~~~~-~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB-SS-EEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCcccC-cCEECCCCCchhHHHHHHH
Confidence 7899887776 7778999999999999876
No 89
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.52 E-value=39 Score=39.12 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=41.0
Q ss_pred CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-----ccCcEEEEecCCeEEEee
Q 043572 42 VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-----DVGKVLLLFCDQCLFLTD 116 (997)
Q Consensus 42 ~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-----~~~~lLv~l~d~~l~~~~ 116 (997)
+.|++|+.+|.|..|.-...... .. ..-+-.. -+.||-||..=. +.+.|.| |.-+.|.+|.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~---~~-------~lllE~~---l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~ 103 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQ---PE-------DLLLETQ---LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYS 103 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCC---Cc-------cEEEEEe---cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEE
Confidence 48999999999999887433210 00 0111111 356999998753 2333455 9999999999
Q ss_pred cCc
Q 043572 117 SLL 119 (997)
Q Consensus 117 l~~ 119 (997)
+..
T Consensus 104 v~~ 106 (418)
T PF14727_consen 104 VSL 106 (418)
T ss_pred EEe
Confidence 843
No 90
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.38 E-value=15 Score=38.52 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=52.5
Q ss_pred eeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|+.-+.+ .|+.|+.+|.+..+.+.++.-.... ..+ ...+|+.+.|.|+..++..+-.-
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-------------iPe---~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-------------IPE---DDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-------------CCC---CCcceeeEEEcCCCcEEEEecCC
Confidence 57788877655 6999999999999999877521111 111 33589999999999955553334
Q ss_pred CeEEEeecCc
Q 043572 110 QCLFLTDSLL 119 (997)
Q Consensus 110 ~~l~~~~l~~ 119 (997)
|+.++|+|..
T Consensus 189 G~cyvW~l~~ 198 (311)
T KOG0315|consen 189 GNCYVWRLLN 198 (311)
T ss_pred ccEEEEEccC
Confidence 6999999975
No 91
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=90.34 E-value=0.078 Score=39.73 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=28.8
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccccC---cccCCCCC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSITGR 981 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~t~~ 981 (997)
.|++|...+. ..+.+.||||.+|..|+.... ...||.++
T Consensus 1 ~C~iC~~~~~-~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~ 42 (45)
T cd00162 1 ECPICLEEFR-EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCR 42 (45)
T ss_pred CCCcCchhhh-CceEecCCCChhcHHHHHHHHHhCcCCCCCCC
Confidence 4999999883 456667799999999998652 33577543
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=30 Score=37.48 Aligned_cols=238 Identities=14% Similarity=0.105 Sum_probs=125.9
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
...+|++++.. |..|...++|-.|..|......- .+.+. -.|-.|+.+......+.++-+-
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--------------~~ti~---skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--------------VKTIN---SKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--------------eeEee---cccccccEEEEecCCceEEEcc
Confidence 35689998854 66788888888999999876431 22111 1233788888777777555522
Q ss_pred c--CCeEEEeecCccccccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 108 C--DQCLFLTDSLLTQPLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 108 ~--d~~l~~~~l~~l~~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
. |.+|+..+|..=.=+-- .+-.+-|+.+++.|.
T Consensus 76 tk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~-------------------------------------------- 111 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK-------------------------------------------- 111 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCCCCceEEEEEecCC--------------------------------------------
Confidence 2 45777766543000000 001122333333221
Q ss_pred hhcccccCCceEEEEEECceEEEEEEeCC-eEEEEEeEecCCcceEEEEeCC--EEEEEECC-cEEEEEecCCccee--e
Q 043572 185 KEEEQHCRGDNVFAVIIGKRLVLIELVNG-SFVILKEIQCMDGVKTMVWLND--SIIVGTVN-GYSLFSCVTGQSGV--I 258 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~~~--~l~vg~~~-~y~lidl~~g~~~~--l 258 (997)
....|-.+..|.|.+|.+... ....+ .+...| ..++.-. ...+|..+ ...|+|++.-...| .
T Consensus 112 --------~d~FlS~S~D~tvrLWDlR~~~cqg~l---~~~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 112 --------DDTFLSSSLDKTVRLWDLRVKKCQGLL---NLSGRP-IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred --------CCeEEecccCCeEEeeEecCCCCceEE---ecCCCc-ceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 123455667788888877632 22222 233333 2234433 34455555 68889987644433 3
Q ss_pred ecCCCCCCCCc--eEEcC-CCCeEEEEeC-CeEEEEcc-CCCccccccccC----CCCCeEEE--eCcEEEEEE-CCeEE
Q 043572 259 FTLPDVSCPPM--LKLLS-KEQKVLLLVD-NVGVFVDA-HGQPVGGSLVFR----KSPDAVGE--LSMYVVVLR-GGKME 326 (997)
Q Consensus 259 ~~~~~~~~~p~--i~~~~-~~~e~Ll~~~-~~g~fv~~-~G~~~r~~i~w~----~~P~~i~~--~~PYll~~~-~~~ie 326 (997)
|.+... ..+- -..++ ++.-+||+++ +....+|. +|.... ++.-. ..|....+ +.-||++-. ++.|.
T Consensus 180 f~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 180 FSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred EccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-eEeeccCCCCcceeEEECCCCcEEEEecCCCcEE
Confidence 554421 1121 22333 3434555544 34455665 677432 22211 12323333 234888665 58999
Q ss_pred EEecCCCceEEEEecC
Q 043572 327 LYHKKSGICVQAVTFG 342 (997)
Q Consensus 327 I~~~~~~~lvQ~i~~~ 342 (997)
|+++++|..|-...-+
T Consensus 258 vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGP 273 (311)
T ss_pred EEEcCCCcEeeEecCC
Confidence 9999999988776543
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.22 E-value=22 Score=38.27 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=79.7
Q ss_pred EEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEE--EEEEC---CcEEEEEecCCcceeeecCCCCCCCCceE
Q 043572 197 FAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSI--IVGTV---NGYSLFSCVTGQSGVIFTLPDVSCPPMLK 271 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l--~vg~~---~~y~lidl~~g~~~~l~~~~~~~~~p~i~ 271 (997)
..-...|.+.+|-+..++...+.- -..+++++.|.++.. |+++. +.....|++ +..|++.+. ++-.+-
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R--~~~pv~t~~---LPeRvY 160 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR--SSNPVATLQ---LPERVY 160 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeee--cccceeEEEEecCCCcceeEecccccceeecccC--CCCeeeeee---ccceee
Confidence 334566778898888764443321 234679999998765 77765 466777765 334444332 122232
Q ss_pred EcCCCCeEE-EEe-CCeEEEEccCCCccc-----cccccCCCCCeEEEe---CcEEEEEECCeEEEEecCCCceEEEEec
Q 043572 272 LLSKEQKVL-LLV-DNVGVFVDAHGQPVG-----GSLVFRKSPDAVGEL---SMYVVVLRGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 272 ~~~~~~e~L-l~~-~~~g~fv~~~G~~~r-----~~i~w~~~P~~i~~~---~PYll~~~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
..+-...++ |++ +.-...+|..+.++. +++.|.. +.|++. .-|.++-.++.+.|+++..+...+...|
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~--R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT--RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee--eEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence 332122333 333 445556777776654 2566643 334333 5588888899999999988655555544
No 94
>PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal
Probab=90.20 E-value=3.5 Score=44.32 Aligned_cols=128 Identities=19% Similarity=0.149 Sum_probs=83.5
Q ss_pred HHHHHHHhhcCCCCChHHHHhhccC---CC--chHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCch----H
Q 043572 770 QERLQIFLQSSDLYDPEDVLDLIEG---SE--LWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPD----A 840 (997)
Q Consensus 770 r~kL~~fL~~s~~yd~~~~L~~~~~---~~--l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~----l 840 (997)
--||..+|. +.+.+.+-++..++. .. -..-++.-..|+|+||+|+++++. .=.+.++.|++....++ -
T Consensus 208 LlKLQSLLC-gpsl~v~silpvLE~Lsed~~~gLSlhlLC~trL~~~E~sId~LLd--rCPqAVV~YA~helk~e~~~lW 284 (353)
T PF14763_consen 208 LLKLQSLLC-GPSLDVESILPVLEPLSEDTDGGLSLHLLCITRLGEYEKSIDKLLD--RCPQAVVPYANHELKEEHQELW 284 (353)
T ss_pred HHHHHHHHc-CCCccHHHHHHHHhhcccccccCeehhhhhhhhhccHHHHHHHHHH--hCcHHHHHHhhhhcccchHHHH
Confidence 345555554 556777776666542 21 123356667899999999999996 45788999999876332 2
Q ss_pred HHHHHHHhcCCC----CCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHH
Q 043572 841 YMQLLDMYLDSQ----DGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLR 900 (997)
Q Consensus 841 ~~~Ll~~~l~~~----~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~ 900 (997)
|..||-..-+.. +.++-........|+--+..+++.+.++.+|+|-+..-+-+||...-+
T Consensus 285 WkkLLpELc~rir~~~~~~~l~ls~LKEtLsvvA~eLe~~dFLnlLPeDGtAaFFLPyLl~cs~ 348 (353)
T PF14763_consen 285 WKKLLPELCDRIRCGGDRQELLLSSLKETLSVVAMELELRDFLNLLPEDGTAAFFLPYLLYCSR 348 (353)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccCCHHHHHhhCCCccchHHHHHHHHHHHh
Confidence 666664332221 111112233444555556789999999999999999888888876544
No 95
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=89.91 E-value=0.21 Score=38.96 Aligned_cols=41 Identities=17% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeE-EEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~--~~~~~~t~~ 981 (997)
++..|.+|.....+ .++.||||. +...|..+. ....||.++
T Consensus 1 ~~~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr 44 (50)
T PF13920_consen 1 EDEECPICFENPRD--VVLLPCGHLCFCEECAERLLKRKKKCPICR 44 (50)
T ss_dssp -HSB-TTTSSSBSS--EEEETTCEEEEEHHHHHHHHHTTSBBTTTT
T ss_pred CcCCCccCCccCCc--eEEeCCCChHHHHHHhHHhcccCCCCCcCC
Confidence 35689999998654 778899999 999999987 456688543
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=89.85 E-value=41 Score=38.89 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=132.6
Q ss_pred EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC-eEEEe
Q 043572 37 ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ-CLFLT 115 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~-~l~~~ 115 (997)
++-.|.+++-|+-|=.+..|....-..... ++- .+++. ...+|..+..-+..+.+|| +++. +..+|
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~--~fr--~l~P~--------E~h~i~sl~ys~Tg~~iLv-vsg~aqakl~ 241 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMR--SFR--QLQPC--------ETHQINSLQYSVTGDQILV-VSGSAQAKLL 241 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccch--hhh--ccCcc--------cccccceeeecCCCCeEEE-EecCcceeEE
Confidence 344588999999999999988876553211 110 11111 3447888888889998888 8876 88888
Q ss_pred ecCcccccc---------ccccccceE----EEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 116 DSLLTQPLK---------KLGFLKGIS----VIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 116 ~l~~l~~~~---------~~~~~kg~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+=.-++-.. .+..+||++ +-+++|..
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~----------------------------------------- 280 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN----------------------------------------- 280 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-----------------------------------------
Confidence 876655322 245566633 22222211
Q ss_pred cchhcccccCCceEEEEEECceEEEEEEeCC--eEEEEEeEec-CC--cceEEEEeCC--EEEEEEC-CcEEEEEecCCc
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SFVILKEIQC-MD--GVKTMVWLND--SIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~~~~kei~~-~~--~~~~l~~~~~--~l~vg~~-~~y~lidl~~g~ 254 (997)
....|..+-.-.+.||...+. ..+.+|.-.. +. +|++.+|..+ .|.-|+. ....+.|..+-.
T Consensus 281 ----------k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 281 ----------KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred ----------ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc
Confidence 112334444455666665442 1112222111 11 4578888843 4666654 467788875445
Q ss_pred ceeeecCCCC---CCCCceEEcCCCCeEEEEe--CCeEEEEccCCCccccccccCCCCCeE----EEeCc---EEEEEE-
Q 043572 255 SGVIFTLPDV---SCPPMLKLLSKEQKVLLLV--DNVGVFVDAHGQPVGGSLVFRKSPDAV----GELSM---YVVVLR- 321 (997)
Q Consensus 255 ~~~l~~~~~~---~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~i~w~~~P~~i----~~~~P---Yll~~~- 321 (997)
+.|.+.+.+. +..-....++.++.+|+.. |+..-.-|.. ...++-..|++-|..+ ++..| -|++-+
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr-q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR-QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc-ccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 5565555421 1112234445556777764 3332222221 1111123555444322 33334 222221
Q ss_pred ------CCeEEEEecCCCceEEEEecCCCCC
Q 043572 322 ------GGKMELYHKKSGICVQAVTFGGEGG 346 (997)
Q Consensus 322 ------~~~ieI~~~~~~~lvQ~i~~~~~~~ 346 (997)
.+.+.+++..+.+.||+|.++.+.+
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence 2468999999999999999987643
No 97
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.85 E-value=68 Score=40.89 Aligned_cols=240 Identities=13% Similarity=0.049 Sum_probs=119.7
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
...|+|++.. |+.|+.|+.+|.+..|........ +.. ...+.... ....+|..+...+..+..|+ +-
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-~~~-----~~~~~~~~----~~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-GRD-----IHYPVVEL----ASRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-ccc-----cccceEEe----cccCceeeEEeccCCCCEEEEEe
Confidence 3467877753 567999999999999987532110 000 00000001 13456777777765444444 33
Q ss_pred cCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.||+|.+|++..-..+..+. -...|..++.++.
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~---------------------------------------------- 586 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA---------------------------------------------- 586 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC----------------------------------------------
Confidence 48899999987543322221 1122433333210
Q ss_pred cccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEecCCcceEEEEe---CCEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 187 EEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL---NDSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 187 ~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~---~~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++. .++.+ ....|.+|.+..+. ....+.....+.++.|. +..+++|.. ....++|+.++.. ++...
T Consensus 587 -----~~~-~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~ 657 (793)
T PLN00181 587 -----DPT-LLASGSDDGSVKLWSINQGV--SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTM 657 (793)
T ss_pred -----CCC-EEEEEcCCCEEEEEECCCCc--EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEe
Confidence 111 23333 34567888776542 22333344567788885 456777755 4688899876532 22211
Q ss_pred CCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCCcc--c-ccc-ccCCC---CCeEEEe--CcEEEEEE-CCeEEEEe
Q 043572 262 PDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQPV--G-GSL-VFRKS---PDAVGEL--SMYVVVLR-GGKMELYH 329 (997)
Q Consensus 262 ~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~~~--r-~~i-~w~~~---P~~i~~~--~PYll~~~-~~~ieI~~ 329 (997)
......-....+.++ .++++ .|+...+.|..-... . ..+ .+.+. +..+.+. .+||++.. ++.|.|++
T Consensus 658 ~~h~~~V~~v~f~~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 658 IGHSKTVSYVRFVDS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred cCCCCCEEEEEEeCC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 111111111222333 44443 355555566431100 0 011 22221 2233333 46887665 67899988
Q ss_pred cCCCceE
Q 043572 330 KKSGICV 336 (997)
Q Consensus 330 ~~~~~lv 336 (997)
...+..+
T Consensus 737 ~~~~~~~ 743 (793)
T PLN00181 737 KAFPMPV 743 (793)
T ss_pred CCCCCce
Confidence 7655433
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.84 E-value=40 Score=41.23 Aligned_cols=189 Identities=15% Similarity=0.174 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCC
Q 043572 574 VEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEES 653 (997)
Q Consensus 574 ~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~ 653 (997)
+|+++..-++-++|+.|-.||+..|++++|+++-.. +|.- .|
T Consensus 816 lEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~----------~DRi-------------------------HL--- 857 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAET----------KDRI-------------------------HL--- 857 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhh----------ccce-------------------------eh---
Confidence 456666667778888888888888888888875331 1100 01
Q ss_pred CCHHHHHHHHhhhh-ccCchhhhhhcccccccCCCChhHHHHHhhccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 043572 654 SDEDLILQHLGWIA-DINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAK 732 (997)
Q Consensus 654 ~~~~li~~~~~wll-~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~ 732 (997)
....+.|+..|- +.|-+.|++-+-. .....-.|-+.|.++++ ...+|.. .. .|+.+..--.. |
T Consensus 858 --r~Tyy~yA~~Lear~Di~~AleyyEK----~~~hafev~rmL~e~p~-~~e~Yv~----~~--~d~~L~~WWgq-Y-- 921 (1416)
T KOG3617|consen 858 --RNTYYNYAKYLEARRDIEAALEYYEK----AGVHAFEVFRMLKEYPK-QIEQYVR----RK--RDESLYSWWGQ-Y-- 921 (1416)
T ss_pred --hhhHHHHHHHHHhhccHHHHHHHHHh----cCChHHHHHHHHHhChH-HHHHHHH----hc--cchHHHHHHHH-H--
Confidence 133555555553 3456667777743 23455667777776654 3344443 21 23443333221 3
Q ss_pred HHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhc----CCCCChHHHHhhccCCCchHHHHHH----
Q 043572 733 SAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQS----SDLYDPEDVLDLIEGSELWLEKAIL---- 804 (997)
Q Consensus 733 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~----s~~yd~~~~L~~~~~~~l~~e~~~L---- 804 (997)
++...+ ++ .+-..+.+..++... .-.=..+++-++...++- ....|.
T Consensus 922 --lES~Ge-----------md-----------aAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~ 976 (1416)
T KOG3617|consen 922 --LESVGE-----------MD-----------AALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARM 976 (1416)
T ss_pred --Hhcccc-----------hH-----------HHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHH
Confidence 221110 00 011233333332211 011123444444443321 122333
Q ss_pred HHhhcchHHHHHHHHHhcCCHHHHHHHHhhcC-CchHHH
Q 043572 805 YRKLGQETLVLQILALKLEDSEAAEQYCAEIG-RPDAYM 842 (997)
Q Consensus 805 l~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~-~~~l~~ 842 (997)
|.-.|+..+|+..+. ...-|..|+..|+..+ +.++|.
T Consensus 977 YEn~g~v~~Av~FfT-rAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFT-RAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHH
Confidence 445577889999888 6788999999999876 234444
No 99
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=89.55 E-value=9.3 Score=43.57 Aligned_cols=153 Identities=10% Similarity=0.097 Sum_probs=88.7
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
..|+|++.. +..|.-|...|.|..-....+... +.|-. -+..-|.-+..-+.-..+|++-+
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-------------t~f~~---~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-------------TTFTI---DSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccc-------------cceec---CCCCeEEEeecccccceeeEeecc
Confidence 589999843 457888899999886555443311 11100 01222333444444455666444
Q ss_pred CCeEEEeecCcccccccc-----ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 109 DQCLFLTDSLLTQPLKKL-----GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~-----~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
+|.|++|+...-.|+..- ..++|+ |.. |+
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gi---cfs-------------------ps------------------------ 219 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGI---CFS-------------------PS------------------------ 219 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcc---eec-------------------CC------------------------
Confidence 469999998887776431 122221 111 11
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-cEEEEEecCCccee
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-GYSLFSCVTGQSGV 257 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-~y~lidl~~g~~~~ 257 (997)
+....+-|+..|||.+|..... ...+.+....+..+++|. |..||.|+.+ +.+-+|+. +...|
T Consensus 220 --------ne~l~vsVG~Dkki~~yD~~s~--~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R-~~k~P 285 (673)
T KOG4378|consen 220 --------NEALLVSVGYDKKINIYDIRSQ--ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR-STKAP 285 (673)
T ss_pred --------ccceEEEecccceEEEeecccc--cccceeeecCCcceeeecCCceEEEeecCCceEEEEecc-cCCCC
Confidence 1124456788999999988753 333445554555777776 4569999665 67788987 44333
No 100
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=89.37 E-value=0.13 Score=38.84 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=32.9
Q ss_pred cCccccCcc-CCccEEEcCCCeEEEeccccccC--cccCCCCC
Q 043572 942 LCDSCHARL-GTKLFAMYPDDTIVCYKCYRRQG--ESTSITGR 981 (997)
Q Consensus 942 ~C~vC~k~l-~~~~f~v~p~g~~~H~~C~~~~~--~~~~~t~~ 981 (997)
.|++|.++. ....+.+.+|||++...|+.... ...||.++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~ 43 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICR 43 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCC
Confidence 499999999 34579999999999999999875 56788543
No 101
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.36 E-value=1.1 Score=50.45 Aligned_cols=118 Identities=21% Similarity=0.170 Sum_probs=70.5
Q ss_pred cccccCCCCCCCcc-ceeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCC-------CCCCCCCCccccccccccc
Q 043572 16 SQFDLSHYSRSSPI-RSLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTL-------HVPNTTPSQQHVSFLKTVS 85 (997)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 85 (997)
+++|++......++ ....|.|++. -+..+|+||++|.++......-++... ..++. +...+.++
T Consensus 201 k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t----~~~~~~Gh-- 274 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT----QINVLVGH-- 274 (476)
T ss_pred EEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc----eeeeeccc--
Confidence 46676554333222 4467777664 477999999999998777665442111 01111 11112221
Q ss_pred cCCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccc-eEEEEeec
Q 043572 86 VADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRI 139 (997)
Q Consensus 86 ~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~ 139 (997)
-..++|+.+.+--+..-|+..-.||++.+|+..+.+-+-.+...|| |+....++
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 2347999999888888444433478999999988766555554565 44444433
No 102
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=89.30 E-value=69 Score=40.16 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 544 GVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 544 ~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
.+-++|+..|.+.++.++...++..-..- ..--|..|+.-|.+.|++++|+++|.+....
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEK----------TTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCC----------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45577888888887644333322110000 1124789999999999999999999988654
No 103
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=1.5 Score=54.60 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=84.2
Q ss_pred HHHHHHhhcCC-CCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC------------HHHHHHHHhhcCC
Q 043572 771 ERLQIFLQSSD-LYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED------------SEAAEQYCAEIGR 837 (997)
Q Consensus 771 ~kL~~fL~~s~-~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D------------~~~Ae~yC~~~~~ 837 (997)
.-...+|+..+ +.+.+-+-..+.....+.+.++||..-|+|++||+++. ++.| ++..++|-...++
T Consensus 479 ~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~-~l~d~~~~~d~~~~~~~e~ii~YL~~l~~ 557 (877)
T KOG2063|consen 479 GLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLR-DLVDEDSDTDSFQLDGLEKIIEYLKKLGA 557 (877)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHH-HHhccccccccchhhhHHHHHHHHHHhcc
Confidence 34556777755 77888888888888899999999999999999999999 4544 2345666666555
Q ss_pred c--hHHHHHHHHhcCCCCCCchhHHHHHHHHHh----ccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHH
Q 043572 838 P--DAYMQLLDMYLDSQDGKEPMFKAAVRLLHN----HGESLDPLQVLETLSPDMPLQLASDTILRMLRARL 903 (997)
Q Consensus 838 ~--~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~----~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~ 903 (997)
+ ++.....+-.++.. | +.+++++.. ..+.+++.+|++.|+..-+ ..+-+||..++....
T Consensus 558 ~~~~Li~~y~~wvl~~~----p--~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~-~l~I~YLE~li~~~~ 622 (877)
T KOG2063|consen 558 ENLDLILEYADWVLNKN----P--EAGIQIFTSEDKQEAESISRDDVLNYLKSKEP-KLLIPYLEHLISDNR 622 (877)
T ss_pred cchhHHHHHhhhhhccC----c--hhheeeeeccChhhhccCCHHHHHHHhhhhCc-chhHHHHHHHhHhcc
Confidence 4 44444444444432 1 224444443 4578999999998886543 233466776665543
No 104
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=89.21 E-value=0.11 Score=46.17 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=24.2
Q ss_pred CcCccccCccCC-ccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~ 972 (997)
-+|.+||++|-. ..|.+++. -+||+.|+...
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~ 34 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREK 34 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHH
Confidence 379999999965 45665555 77999999874
No 105
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=89.03 E-value=33 Score=37.26 Aligned_cols=58 Identities=7% Similarity=0.137 Sum_probs=35.6
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeEecCCcceE---EEEeCCEEEEEEC----CcEEEEEecCC
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKT---MVWLNDSIIVGTV----NGYSLFSCVTG 253 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~---l~~~~~~l~vg~~----~~y~lidl~~g 253 (997)
.+|+|+.+.+|.+|++.++ .+.++.+..-.+|+. ++-..+.-.+++. .+..++|+...
T Consensus 105 ~riVvvl~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 105 DRIVVVLENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred CeEEEEecCeEEEEEcCCC-hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 4799999999999999865 555555444444433 3333344333333 36777777643
No 106
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.094 Score=54.24 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCcCccccCccCCcc--------EEEcCCCeEEEecccccc----CcccCC
Q 043572 939 DESLCDSCHARLGTKL--------FAMYPDDTIVCYKCYRRQ----GESTSI 978 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~--------f~v~p~g~~~H~~C~~~~----~~~~~~ 978 (997)
++..|++||++|..+. .+---|+|+||..|.+.- ....||
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCP 274 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCP 274 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCc
Confidence 6789999999997543 555679999999999854 245588
No 107
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=69 Score=39.66 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=40.4
Q ss_pred eeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
-|+-++.++. -+.=|.+|-.+=.++..+...-+ +...+. +-.+|+.+..-|..+.+|-.--|+
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE------------vDtcrg---H~nnVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE------------VDTCRG---HYNNVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEecccccee------------ehhhhc---ccCCcceEEecCccceeEecCCCc
Confidence 3445555552 34445666666666665543211 111111 344788888778788444433378
Q ss_pred eEEEeecCc
Q 043572 111 CLFLTDSLL 119 (997)
Q Consensus 111 ~l~~~~l~~ 119 (997)
++++|+|..
T Consensus 273 sirVwDm~k 281 (1202)
T KOG0292|consen 273 SIRVWDMTK 281 (1202)
T ss_pred cEEEEeccc
Confidence 999999744
No 108
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=88.66 E-value=3.5 Score=47.40 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=35.8
Q ss_pred ceEEEEEECceEEEEEEeCCeEEEEEeEecCCcc-------eEEEEeCCEEEEEECCcEEEEEecCC
Q 043572 194 DNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGV-------KTMVWLNDSIIVGTVNGYSLFSCVTG 253 (997)
Q Consensus 194 ~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~-------~~l~~~~~~l~vg~~~~y~lidl~~g 253 (997)
...+|+....++.+|.+-+ ++.+++..++..+ .++...|+.+++....+..++.+-..
T Consensus 273 ~~Lv~l~~~G~i~i~SLP~--Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 273 YCLVCLFNNGSIRIYSLPS--LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp EEEEEEETTSEEEEEETTT----EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred eEEEEEECCCcEEEEECCC--chHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEcc
Confidence 3456777777899999876 7777777775432 45556677788888889888888643
No 109
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.03 E-value=0.28 Score=53.02 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=41.5
Q ss_pred CCCcCccccCccCC--ccEEEcCCCeEEEeccccccC-cccCC-CCCCCCCcccc
Q 043572 939 DESLCDSCHARLGT--KLFAMYPDDTIVCYKCYRRQG-ESTSI-TGRDFKKDVLI 989 (997)
Q Consensus 939 ~~~~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~~~-~~~~~-t~~~f~~~~~~ 989 (997)
..-.|+++++.+.. ..+++.||||||-+.|++... ...|| +|..|...-+|
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccCCEE
Confidence 44589999999965 345567999999999999876 56799 99999877654
No 110
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.00 E-value=10 Score=44.30 Aligned_cols=85 Identities=24% Similarity=0.414 Sum_probs=50.9
Q ss_pred EEEEEECceEEEEEEeCC------------eEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCC
Q 043572 196 VFAVIIGKRLVLIELVNG------------SFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~------------~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~ 263 (997)
.++++++..+.++++... .|..+.|+ ...|++..|.++.+++.+.+.-.. +-+|++..+-..
T Consensus 158 ~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d~fiYtT~~~lkY--l~~Ge~~~i~~l-- 231 (443)
T PF04053_consen 158 LVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVEDCFIYTTSNHLKY--LVNGETGIIAHL-- 231 (443)
T ss_dssp EEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETTEEEEE-TTEEEE--EETTEEEEEEE---
T ss_pred EEEEEeCCeEEEEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcCEEEEEcCCeEEE--EEcCCcceEEEc--
Confidence 578889999999999877 89998887 568999999999877777773333 445665544333
Q ss_pred CCCCCceEEcCCCCeEEEEe-C--CeEEEEccCCCcc
Q 043572 264 VSCPPMLKLLSKEQKVLLLV-D--NVGVFVDAHGQPV 297 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~-~--~~g~fv~~~G~~~ 297 (997)
+ ..-+|+.+ + +...++|.+|++.
T Consensus 232 ----------d-~~~yllgy~~~~~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 232 ----------D-KPLYLLGYLPKENRLYLIDRDGNVI 257 (443)
T ss_dssp ----------S-S--EEEEEETTTTEEEEE-TT--EE
T ss_pred ----------C-CceEEEEEEccCCEEEEEECCCCEE
Confidence 2 23566663 2 5677778777764
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.83 E-value=1.1 Score=37.09 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 385 LLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 385 Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
|++.|+|++|+.+++..-...+.. ..+....|..++..|+|++|...+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN----PEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 678999999999998865432222 23455688889999999999999876
No 112
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=87.74 E-value=43 Score=35.85 Aligned_cols=234 Identities=14% Similarity=0.090 Sum_probs=129.0
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
.+-|+=+..|-.++.+.+..+....|. +++-++. +.+-|+.+.+.++.+.+|-.-.|+++++|++..-
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~---------~~r~~~G---HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g 95 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGV---------PVRRLTG---HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG 95 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCc---------eeeeeec---cceEecceEEccCCceEEeccccceEEEEEecCC
Confidence 345666788889999998777543332 1222221 4567999999999998888778999999999775
Q ss_pred ccccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEE
Q 043572 121 QPLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAV 199 (997)
Q Consensus 121 ~~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~V 199 (997)
++... .+-+++|..+++.+.. ..|+-
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn-----------------------------------------------------~qivS 122 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDN-----------------------------------------------------RQIVS 122 (315)
T ss_pred cEEEEEEecCCceEEEEecCCC-----------------------------------------------------ceeec
Confidence 44332 2446677777755422 12222
Q ss_pred EE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC---EEEEE--ECCcEEEEEecCCcceeeecCCCCCCCCceEEc
Q 043572 200 II-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND---SIIVG--TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 200 a~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~---~l~vg--~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~ 273 (997)
+. .|.|.+|...++.-..+.+..-.+=|.++.|.-+ .+++. -.+...+.|+++-+...-|+--.... .-+.+
T Consensus 123 GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v--~t~~v 200 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV--NTVTV 200 (315)
T ss_pred CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE--EEEEE
Confidence 22 2346666665543222233222345678888743 34444 34578888887655443333211100 01112
Q ss_pred CCCCeEEEEe---CCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCCceEEEEecCC
Q 043572 274 SKEQKVLLLV---DNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 274 ~~~~e~Ll~~---~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+.+ --|+++ |...+..|. +|+... ++.=.....++++. .+.|.+.+...|.|.+++++..|-++.+..
T Consensus 201 SpD-GslcasGgkdg~~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 201 SPD-GSLCASGGKDGEAMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred CCC-CCEEecCCCCceEEEEEccCCceeE-eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccc
Confidence 212 122222 234444443 222211 11111122233333 345666778899999999999888876644
No 113
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=87.46 E-value=3.6 Score=47.91 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=53.3
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc-cCcEEEEecCCeEEEeecCc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD-VGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~-~~~lLv~l~d~~l~~~~l~~ 119 (997)
+.+|.|||++|.+-.+++.-+...+ +. ..+.+.++ .+-.+|..|..=|- .+.|++++.|.++.+|+|..
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e----~~---~tPe~~lt---~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPE----NE---MTPEKILT---IHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCc----cc---CCcceeee---cccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 5689999999999999997654321 10 01222222 34556777776664 45566667799999999976
Q ss_pred cccccc-cccccceEEEEee
Q 043572 120 TQPLKK-LGFLKGISVIAKR 138 (997)
Q Consensus 120 l~~~~~-~~~~kg~~~f~~~ 138 (997)
-..-.. .+-+.++-.||+.
T Consensus 710 ~~~~~~l~gHtdqIf~~AWS 729 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWS 729 (1012)
T ss_pred hhhhheeccCcCceeEEEEC
Confidence 432221 1223344455543
No 114
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=87.33 E-value=22 Score=41.64 Aligned_cols=52 Identities=17% Similarity=-0.021 Sum_probs=34.3
Q ss_pred CCCcceEEEeecccCcEEEEe-cCCeEEEeecCccccccccccccceEEEEeec
Q 043572 87 ADSPVESIFVLDDVGKVLLLF-CDQCLFLTDSLLTQPLKKLGFLKGISVIAKRI 139 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l-~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~ 139 (997)
.+..|..|.+-|.++ .|++- .||+|++|.+.+..-+-.....--+.+++.++
T Consensus 399 Htg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P 451 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNP 451 (733)
T ss_pred cCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecC
Confidence 566899999999888 44434 36799999987765443333333455555554
No 115
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=0.36 Score=50.51 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=35.6
Q ss_pred EEcCCCcCccccCccCCccEEEcCCCeEEEeccccccCc----ccCC-CCC
Q 043572 936 QINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGE----STSI-TGR 981 (997)
Q Consensus 936 ~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~----~~~~-t~~ 981 (997)
+-+.++.|++||++=.. ++..-||||++.|.|...... .+|| -|.
T Consensus 235 ~~t~~~~C~~Cg~~Pti-P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~ 284 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTI-PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGE 284 (298)
T ss_pred cccCCceeeccCCCCCC-CeeeccccceeehhhhhhhhcchhhcccCccCC
Confidence 34578999999987553 688899999999999998743 5788 443
No 116
>PHA02929 N1R/p28-like protein; Provisional
Probab=87.16 E-value=0.26 Score=51.82 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=32.6
Q ss_pred cCCCcCccccCccCCcc-----EE-EcCCCeEEEecccccc--CcccCCCCC
Q 043572 938 NDESLCDSCHARLGTKL-----FA-MYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~-----f~-v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
..+..|++|...+.... ++ +-||||+||..|...- ....||.|+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR 223 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCC
Confidence 45789999999876432 33 4479999999999753 345799765
No 117
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.12 E-value=31 Score=41.69 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=74.4
Q ss_pred ceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CC-EEEEEECC-cEEEEEecCCcceeeecCCCCCCCCceEEc---CCC
Q 043572 203 KRLVLIELVNGSFVILKEIQCMDGVKTMVWL-ND-SIIVGTVN-GYSLFSCVTGQSGVIFTLPDVSCPPMLKLL---SKE 276 (997)
Q Consensus 203 kki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~-~l~vg~~~-~y~lidl~~g~~~~l~~~~~~~~~p~i~~~---~~~ 276 (997)
..+.+|..+ ..+..+.+... -+.+..|. |+ .|.+|+++ +..++|+.++...+..+-- .-.|.++ +++
T Consensus 394 ~SikiWn~~--t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH----dgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 394 ESIKIWNRD--TLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH----DGAIWSISLSPDN 466 (888)
T ss_pred CcEEEEEcc--CcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc----ccceeeeeecCCC
Confidence 555554443 34555555443 45566666 33 49999887 4888888766544444311 1233333 444
Q ss_pred CeEEEE-eCCeEEEEc------cCCCccc-------cccccCCCCCeEEEe--CcEEEE-EECCeEEEEecCCCce
Q 043572 277 QKVLLL-VDNVGVFVD------AHGQPVG-------GSLVFRKSPDAVGEL--SMYVVV-LRGGKMELYHKKSGIC 335 (997)
Q Consensus 277 ~e~Ll~-~~~~g~fv~------~~G~~~r-------~~i~w~~~P~~i~~~--~PYll~-~~~~~ieI~~~~~~~l 335 (997)
..|+.+ .|...-|.+ .-|...+ .+++.++....+.+. .-|+.+ +.++++.||.+.+...
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 455555 455555533 2243322 267888777777776 457764 6799999999988544
No 118
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=86.50 E-value=1.1 Score=48.61 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=30.6
Q ss_pred cCCCcCccccCccCCc-----------cEEEcCCCeEEEeccccccC--cccCCCC
Q 043572 938 NDESLCDSCHARLGTK-----------LFAMYPDDTIVCYKCYRRQG--ESTSITG 980 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~-----------~f~v~p~g~~~H~~C~~~~~--~~~~~t~ 980 (997)
..++.|.+|--.+.-+ .=-+-||||+.|.+|++.-. ...||-|
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPIC 340 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPIC 340 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcc
Confidence 3678999998775321 12468999999999999742 2458833
No 119
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=86.02 E-value=0.21 Score=35.83 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.7
Q ss_pred CccccCccCCccEEEcCCCeEEEecccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
|++|.... ...++.|+||.+|+.|....
T Consensus 1 C~iC~~~~--~~~~~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 1 CPICLEEL--KDPVVLPCGHTFCRSCIRKW 28 (39)
T ss_pred CCcCccCC--CCcEEecCCChHHHHHHHHH
Confidence 78888873 35667899999999999864
No 120
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.98 E-value=1.8 Score=35.36 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
+...+++.|+|++|+..++..-...+.. ...+...|..++.+|++++|...|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN----PEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567899999999999998876543322 24566688899999999999998876
No 121
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=85.94 E-value=23 Score=37.43 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=90.4
Q ss_pred EEEEECceEEEEEEeCCeEEEEEeEec---CCcceEEEEeC---CEEEEE-ECCcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 197 FAVIIGKRLVLIELVNGSFVILKEIQC---MDGVKTMVWLN---DSIIVG-TVNGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~~~~~~kei~~---~~~~~~l~~~~---~~l~vg-~~~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
.+-+..+++.++.....+|. ++... .+.+..++|.. +.++.+ ..+...+.|+.+|..+.-...... +-.
T Consensus 36 asgs~dktv~v~n~e~~r~~--~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e--ni~ 111 (313)
T KOG1407|consen 36 ASGSFDKTVSVWNLERDRFR--KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE--NIN 111 (313)
T ss_pred eecccCCceEEEEecchhhh--hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc--ceE
Confidence 34567788888888766433 33222 33566777773 446655 446899999987654433333221 122
Q ss_pred eEEcCCCCeEEEE-eCCeEEEEccCCCccccccccCCCCCeEEEeCc-EEEEE--ECCeEEEEecCCCceEEEEecCCCC
Q 043572 270 LKLLSKEQKVLLL-VDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSM-YVVVL--RGGKMELYHKKSGICVQAVTFGGEG 345 (997)
Q Consensus 270 i~~~~~~~e~Ll~-~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P-Yll~~--~~~~ieI~~~~~~~lvQ~i~~~~~~ 345 (997)
|.--|+++.+.+. .|++..|+|..-.....+-++...-..+.+..+ -++.+ ..+.|+|-+......||+|.-..+
T Consensus 112 i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s- 190 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS- 190 (313)
T ss_pred EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc-
Confidence 2222334344443 567778877543222112222222223333322 23333 347999999999999999965443
Q ss_pred CCCceecccccCCCcEEEEEcCCe
Q 043572 346 GGQCIATDEECGAGKLLVVATPTK 369 (997)
Q Consensus 346 ~~~~i~~~~~~~~g~~~~v~s~~~ 369 (997)
.|++..++. +|+.|-+.|...
T Consensus 191 --nCicI~f~p-~GryfA~GsADA 211 (313)
T KOG1407|consen 191 --NCICIEFDP-DGRYFATGSADA 211 (313)
T ss_pred --ceEEEEECC-CCceEeeccccc
Confidence 677766554 456454444433
No 122
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=85.89 E-value=8.1 Score=43.92 Aligned_cols=77 Identities=8% Similarity=0.080 Sum_probs=55.2
Q ss_pred ceeeeeEEeec--C-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 30 RSLSISPISDC--Q-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~--~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
++.-.+|+... + +-+++|+++|.|++|.+.... .+|... + .-.+|..|..+++..+.+-+
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----------vvqeYd--~----hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----------VVQEYD--R----HLGAILDITFVDEGRRFISS 360 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----------HHHHHH--h----hhhheeeeEEccCCceEeee
Confidence 34456777654 3 458899999999999987543 222222 1 45689999999999988886
Q ss_pred ecCCeEEEeecCccccc
Q 043572 107 FCDQCLFLTDSLLTQPL 123 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~ 123 (997)
-.|+.+++|....-.|+
T Consensus 361 SDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPI 377 (503)
T ss_pred ccCccEEEEEcCCCccc
Confidence 66789999988764444
No 123
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=0.36 Score=50.96 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=33.5
Q ss_pred CCcCccccCccC-CccEEEcCCCeEEEecccccc---CcccCCCCC
Q 043572 940 ESLCDSCHARLG-TKLFAMYPDDTIVCYKCYRRQ---GESTSITGR 981 (997)
Q Consensus 940 ~~~C~vC~k~l~-~~~f~v~p~g~~~H~~C~~~~---~~~~~~t~~ 981 (997)
+-.|++|=..+- +....|.||.|.||..|..+- ..+.||+|+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCr 368 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCR 368 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccC
Confidence 357999987763 345889999999999999874 467799875
No 124
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.27 E-value=9.4 Score=47.88 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=59.2
Q ss_pred ceeeeeEEee--cCCe----EEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 30 RSLSISPISD--CQVL----IYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 30 ~~~~I~ci~~--~~~~----l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
.+++..+.++ |+.. |.=|++||.|-.|.-.....+... ..+. .+. ....+|.-+.+=+..+.+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-----~~la--~~~----~h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-----EVLA--TKS----KHTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-----HHHh--hhc----ccCCceeeeeccccCCce
Confidence 4567777774 3444 666899999999988663111000 0111 111 255688888887777756
Q ss_pred EEEec-CCeEEEeecCccc-ccc--ccccccceEEEEee
Q 043572 104 LLLFC-DQCLFLTDSLLTQ-PLK--KLGFLKGISVIAKR 138 (997)
Q Consensus 104 Lv~l~-d~~l~~~~l~~l~-~~~--~~~~~kg~~~f~~~ 138 (997)
|.+=+ ||.|++|+|..++ |.+ .......|++++.+
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN 170 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence 66333 4699999999876 322 22344556666655
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.03 E-value=61 Score=39.81 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHHhhcch----------------hh--HHH--HHHHHHHHHHHHhhhhcHHHHHHHHHhcC
Q 043572 385 LLRKKDFKEAISLAEELECEGE----------------MA--KEM--LSFVHAQIGFLLLFDLHFEEAVDHFLHSE 440 (997)
Q Consensus 385 Ll~~~~~eeAl~L~~~~~~~~~----------------~~--~~~--l~~i~~~~~~~lf~~~~f~~A~~~f~~~~ 440 (997)
.++.|..|+|+.|-++|..-+. +. +++ ++.-|-+||-+|=..++-+.|+++|.+++
T Consensus 810 AieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 3567888888888877643211 00 112 44555557776777889999999999976
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=84.99 E-value=31 Score=37.28 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-c
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-C 108 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~ 108 (997)
.-+.|+.++ |+.|.+||+.-.+..|.+..-.-+.+. . +... ....|.|+..-+..+ +-|.- -
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa------n--Pd~q------ht~ai~~V~Ys~t~~-lYvTaSk 281 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA------N--PDDQ------HTGAITQVRYSSTGS-LYVTASK 281 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec------C--cccc------cccceeEEEecCCcc-EEEEecc
Confidence 456777765 889999999999999999865432211 1 1111 345899999988888 55533 3
Q ss_pred CCeEEEeecCc
Q 043572 109 DQCLFLTDSLL 119 (997)
Q Consensus 109 d~~l~~~~l~~ 119 (997)
||.+.+|+--+
T Consensus 282 DG~IklwDGVS 292 (430)
T KOG0640|consen 282 DGAIKLWDGVS 292 (430)
T ss_pred CCcEEeecccc
Confidence 88999998543
No 127
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.96 E-value=0.25 Score=42.72 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=25.8
Q ss_pred CCcCccccCccCC-ccEEEcCCCeEEEecccccc
Q 043572 940 ESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 940 ~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~ 972 (997)
+-+|.||+.++-. ..|..+|.|. |||.|+...
T Consensus 6 ewkC~VCg~~iieGqkFTF~~kGs-VH~eCl~~s 38 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTKKGS-VHYECLAES 38 (103)
T ss_pred eeeEeeeCCEeeeccEEEEeeCCc-chHHHHHHH
Confidence 3589999999954 5788889654 899999864
No 128
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=84.87 E-value=1.6 Score=29.03 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEE
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILL 56 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y 56 (997)
..|+||+.-++++.++|+.|.|..|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5799999999999999999988776
No 129
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.22 E-value=14 Score=44.39 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=91.7
Q ss_pred ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 30 RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 30 ~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
....|.|+...++.++-||.||.+.+|...... ++++.+-+..+|..+.+-.. ++++=.--|
T Consensus 330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-----------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-----------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred ccccEEEEEecCCEEEEEecCceEEEEEhhhce-----------------eeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 346899999999999999999999999988432 11111114557888855544 645554458
Q ss_pred CeEEEeecCcc-ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLT-QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l-~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++.+|++... ..+... +|...+... ..
T Consensus 392 ~~IkvWdl~~~~~c~~tl---~~h~~~v~~--------------l~---------------------------------- 420 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTL---QGHTSLVSS--------------LL---------------------------------- 420 (537)
T ss_pred cceEeecCCchhhhhhhh---cCCcccccc--------------cc----------------------------------
Confidence 89999999886 443322 121111100 00
Q ss_pred cccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC--CcceEEEEeCC-EEEEEECCcEEEEEecCCcc
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM--DGVKTMVWLND-SIIVGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~--~~~~~l~~~~~-~l~vg~~~~y~lidl~~g~~ 255 (997)
-.+...+.-....+|.++....+ ...+.+..+ ..+.++.+..+ .+|.+....+.+.|+.+|+-
T Consensus 421 --~~~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 421 --LRDNFLVSSSADGTIKLWDAEEG--ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred --cccceeEeccccccEEEeecccC--ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 00112233345556777655443 333333332 45666666534 46777888999999998854
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=83.97 E-value=6.4 Score=45.85 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=38.3
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEe--CCEEEEE-ECCcEEEEEecCC
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWL--NDSIIVG-TVNGYSLFSCVTG 253 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~--~~~l~vg-~~~~y~lidl~~g 253 (997)
.+++||+++.|.||.+.....+ |++ ....-+.+|+.. |+.|++| +.+.+.-+|++-+
T Consensus 579 p~lfVaTq~~vRiYdL~kqelv--KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 579 PYLFVATQRSVRIYDLSKQELV--KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred ceEEEEeccceEEEehhHHHHH--HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 5799999999999999764222 221 112233455555 5777777 6788999998744
No 131
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=83.76 E-value=23 Score=39.12 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=28.9
Q ss_pred cccCcEEEEecCCeEEEeecCcccccccccc----ccceEEEEee
Q 043572 98 DDVGKVLLLFCDQCLFLTDSLLTQPLKKLGF----LKGISVIAKR 138 (997)
Q Consensus 98 ~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~----~kg~~~f~~~ 138 (997)
=..+||+|+|.+. +|+|++....+++++.. -+|+..++.+
T Consensus 95 mNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 95 MNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred EccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 3467899967665 99999999988876544 3566655544
No 132
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.57 E-value=84 Score=35.49 Aligned_cols=171 Identities=15% Similarity=0.210 Sum_probs=96.1
Q ss_pred ceEEEEEEe--CCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-----cEEEEEecC--CcceeeecCCCCCCCCceE
Q 043572 203 KRLVLIELV--NGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-----GYSLFSCVT--GQSGVIFTLPDVSCPPMLK 271 (997)
Q Consensus 203 kki~i~~~~--~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-----~y~lidl~~--g~~~~l~~~~~~~~~p~i~ 271 (997)
+.|..|++. .+.+.....+.....|..+++. ++.|+++... ....+++.. |....+-.....+..|+-.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 468888884 4478887777778889999984 5668888663 455555553 4444443333344567666
Q ss_pred EcCCCCeEEEEeC----CeEEE-EccCCCcccc--cc-----------ccCCCCCeEEEeC--cEEEEEE--CCeEEEEe
Q 043572 272 LLSKEQKVLLLVD----NVGVF-VDAHGQPVGG--SL-----------VFRKSPDAVGELS--MYVVVLR--GGKMELYH 329 (997)
Q Consensus 272 ~~~~~~e~Ll~~~----~~g~f-v~~~G~~~r~--~i-----------~w~~~P~~i~~~~--PYll~~~--~~~ieI~~ 329 (997)
.+..++.+|++.+ .+.+| ++.+|..... .+ +....|..+.+.. -|+++.. .+.|.++.
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 6654556666532 34444 5556765543 11 2234456666663 3777654 57899999
Q ss_pred cCCCc--e--EEEEecCCCCCCCceecccccCCCcEEEEEc--CCeEEEEeec
Q 043572 330 KKSGI--C--VQAVTFGGEGGGQCIATDEECGAGKLLVVAT--PTKVICYQKV 376 (997)
Q Consensus 330 ~~~~~--l--vQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s--~~~V~~l~~~ 376 (997)
+.... + +..+.++...-++.+.-. . +|+.+|+.. .+.|..+..-
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~--p-dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFS--P-DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE---T-TSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEc--C-CcCEEEEecCCCCcEEEEeec
Confidence 87644 5 455555543212333321 2 245566655 4555555433
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=83.24 E-value=97 Score=35.93 Aligned_cols=239 Identities=16% Similarity=0.105 Sum_probs=122.9
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
+.||.|-.-.|.++-+....++- ....--|-+ -.||-|..+..+|..+ .+-.=+||.+.+|+-..-
T Consensus 212 d~nliit~Gk~H~~Fw~~~~~~l----------~k~~~~fek---~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 212 DPNLIITCGKGHLYFWTLRGGSL----------VKRQGIFEK---REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN 277 (626)
T ss_pred CCcEEEEeCCceEEEEEccCCce----------EEEeecccc---ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc
Confidence 77899999999887664444331 111111222 2567788888888888 555578899999974221
Q ss_pred ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEE
Q 043572 121 QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI 200 (997)
Q Consensus 121 ~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va 200 (997)
..+|-+. |.+ ++...+|.+
T Consensus 278 ------~~~k~~~--aH~-----------------------------------------------------ggv~~L~~l 296 (626)
T KOG2106|consen 278 ------RISKQVH--AHD-----------------------------------------------------GGVFSLCML 296 (626)
T ss_pred ------eEEeEee--ecC-----------------------------------------------------CceEEEEEe
Confidence 1111111 111 011122221
Q ss_pred -------ECceEEEEEEeCCeEEEEEeEecCC---cceEEEEeCCEEEEEECCcEEEEE-ecCCcceeeecCCCCCCCCc
Q 043572 201 -------IGKRLVLIELVNGSFVILKEIQCMD---GVKTMVWLNDSIIVGTVNGYSLFS-CVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 201 -------~kkki~i~~~~~~~~~~~kei~~~~---~~~~l~~~~~~l~vg~~~~y~lid-l~~g~~~~l~~~~~~~~~p~ 269 (997)
..|-=.+..|+ +..++.+|+.+|+ +|+.+.--+.-|+||+.+++.+.- ++++.....+-.++.- =-
T Consensus 297 r~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~del--wg 373 (626)
T KOG2106|consen 297 RDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDEL--WG 373 (626)
T ss_pred cCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccce--ee
Confidence 11112234455 4578888888887 457776554459999998888763 3333322222222210 01
Q ss_pred eEEcCCCCeEEEEeCC-eEEEEccCCCccccccccC---CCC-CeEEEeCcEEEE--EECCeEEEEecCCCceEEEEecC
Q 043572 270 LKLLSKEQKVLLLVDN-VGVFVDAHGQPVGGSLVFR---KSP-DAVGELSMYVVV--LRGGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 270 i~~~~~~~e~Ll~~~~-~g~fv~~~G~~~r~~i~w~---~~P-~~i~~~~PYll~--~~~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
++..++.+.|+-|..+ ..-.-| ...+.|+ ..| ....++.-=+++ ...+..-|.+.++..+||.-.-+
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~------~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN------DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc------CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecC
Confidence 2223444455555432 222223 1135564 223 333443322333 35788899999998888765443
Q ss_pred CCCCCCceecccccCCCcEEEEEcCC
Q 043572 343 GEGGGQCIATDEECGAGKLLVVATPT 368 (997)
Q Consensus 343 ~~~~~~~i~~~~~~~~g~~~~v~s~~ 368 (997)
. +..+..|.. .|..+-++|..
T Consensus 448 ~----~ls~v~ysp-~G~~lAvgs~d 468 (626)
T KOG2106|consen 448 E----QLSVVRYSP-DGAFLAVGSHD 468 (626)
T ss_pred C----ceEEEEEcC-CCCEEEEecCC
Confidence 3 222222322 34555566643
No 134
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=83.05 E-value=30 Score=38.20 Aligned_cols=132 Identities=19% Similarity=0.115 Sum_probs=80.8
Q ss_pred ccCcEEEEecCCeEEEeecCcccccc-ccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc
Q 043572 99 DVGKVLLLFCDQCLFLTDSLLTQPLK-KLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI 177 (997)
Q Consensus 99 ~~~~lLv~l~d~~l~~~~l~~l~~~~-~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (997)
....+.|+..|.+|++|+=..-.|.. +-...|++++.+.+|..
T Consensus 109 H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPls------------------------------------ 152 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLS------------------------------------ 152 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCC------------------------------------
Confidence 34445554667899999877643321 33456789999987632
Q ss_pred ccCCccchhcccccCCceEEEEEECceEEEEEEeCC-eEEE---------EEeEecCC--cceEEEEeCCEEEEEE----
Q 043572 178 KANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG-SFVI---------LKEIQCMD--GVKTMVWLNDSIIVGT---- 241 (997)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~-~~~~---------~kei~~~~--~~~~l~~~~~~l~vg~---- 241 (997)
...++|+.+..|.++..+.. ...+ ..-+..|+ +|.+|.|.++...+++
T Consensus 153 ----------------aselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 153 ----------------ASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred ----------------cceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC
Confidence 12478899999999887643 1111 01122233 5699999976533332
Q ss_pred CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC
Q 043572 242 VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD 284 (997)
Q Consensus 242 ~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~ 284 (997)
.+.+.+.|.++|..+||.+.+..+.. +...+.++.+|.|..
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~s--lLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFS--LLKWSPDGDVLFAAT 257 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCcee--eEEEcCCCCEEEEec
Confidence 35899999999999999876532221 122233456666643
No 135
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=83.00 E-value=1.5e+02 Score=37.79 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=33.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+...+......+... ......|..+...+++++|...+.+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEI----EPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556678899999988877533221111 1223355667778888888888765
No 136
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.92 E-value=93 Score=35.49 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=70.4
Q ss_pred EeCCEEEEEE-CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe-CCeEEEEcc-CCCccccccccCCCC-
Q 043572 232 WLNDSIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVFRKSP- 307 (997)
Q Consensus 232 ~~~~~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w~~~P- 307 (997)
..++.++++. ......+|..+|+..--.+... ...|.+ . ++.+.++. +.....+|. +|+ +.|...+
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~---~-~~~vyv~~~~G~l~~~d~~tG~-----~~W~~~~~ 308 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAV---D-DNRLYVTDADGVVVALDRRSGS-----ELWKNDEL 308 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceE---e-CCEEEEECCCCeEEEEECCCCc-----EEEccccc
Confidence 4577788775 4578889998886544333221 112221 2 33444443 344455564 444 3453311
Q ss_pred -----CeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecCCC-CCCCceecccccCCCcEEEEEcCCeEEEEe
Q 043572 308 -----DAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFGGE-GGGQCIATDEECGAGKLLVVATPTKVICYQ 374 (997)
Q Consensus 308 -----~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~~-~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~ 374 (997)
...++...+|++.. ++.|.+.+..+|+++.++++... ..+...+. .+++|+...++.|++++
T Consensus 309 ~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-----~~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 309 KYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-----GDGLLVQTRDGDLYAFR 377 (377)
T ss_pred cCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-----CCEEEEEeCCceEEEeC
Confidence 11133455666654 56788888899999998887652 11222222 23555555567888763
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=82.79 E-value=82 Score=39.19 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=81.1
Q ss_pred cHHHHHHHHHH----cC----ChhHHHHHHhhcCChHHHHHHHHHHHHhcCC--CCCCCCcccccccccccccccchhhh
Q 043572 573 IVEELETLLDE----SG----HLRTLAFLYASKGMSSKALAIWRVLARNYSS--GLWKDPAVENDLLDGCADVMSGREVA 642 (997)
Q Consensus 573 ~~e~~~~~L~~----~~----~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~--~~~~d~~~~~~l~~~~~~~l~~~~~~ 642 (997)
+.++++++|++ .. -|..|+.+|+.+|++.++|..|...++-.-. ++|. ...++. ..+.+...+
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~---~ladls----~~~~~i~qA 226 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK---RLADLS----EQLGNINQA 226 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH---HHHHHH----HhcccHHHH
Confidence 44555555543 32 4899999999999999999999877754211 1111 001111 011112222
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHhhhhccC-chhhh----hhcccccccCCCChhHHHHHh--------hccChHHHHHHH
Q 043572 643 ATEASKILEE-SSDEDLILQHLGWIADIN-AVLAV----KVLTSEKRINQLSPDKVIAAI--------DSKKVEILQRYL 708 (997)
Q Consensus 643 ~~~~~~~L~~-~~~~~li~~~~~wll~~~-p~~~l----~if~~~~~~~~l~~~~Vl~~L--------~~~~~~~~~~YL 708 (997)
..-+.+-++- ..++.++|+++....+.. -..|+ ++|... ...+.+.+.+.+ .....+.+..+|
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2223333333 467889999987776442 23333 344322 123334444322 222336778888
Q ss_pred HHHHhcC-CCCChHHHHHHHHHHHH
Q 043572 709 QWLIEDQ-DSDDTQFHTLYALSLAK 732 (997)
Q Consensus 709 E~li~~~-~~~~~~~h~~L~~lyi~ 732 (997)
|.-+... ...+-.-|+.|+++|+.
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHH
Confidence 8776622 22344567788888865
No 138
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=82.51 E-value=0.91 Score=32.75 Aligned_cols=30 Identities=10% Similarity=0.325 Sum_probs=24.4
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
+|..|+++|.....++...|..+|..|+.=
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C 30 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFKC 30 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCCC
Confidence 599999999876566666788999999763
No 139
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.35 E-value=99 Score=37.86 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=95.1
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CC-EEEEEE-CCcEEEEEecCCcceeeecCCCCCCCCce
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--ND-SIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPML 270 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~-~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i 270 (997)
..|-..+.|.+.+|....+ .-++-|.-++-|++++|. ++ ..+=|+ ....-|.++.+.++..-... +-+|
T Consensus 382 fLLSSSMDKTVRLWh~~~~--~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-----~~lI 454 (712)
T KOG0283|consen 382 FLLSSSMDKTVRLWHPGRK--ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-----RDLI 454 (712)
T ss_pred eeEeccccccEEeecCCCc--ceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-----hhhh
Confidence 3455567888999887753 445566678889999988 33 355553 34677777765544333332 2344
Q ss_pred EEc---CCCCeEEEE-eCCeEEEEccCCCcccc--ccccC------C-CCCeEEEe--CcE-EEEE-ECCeEEEEecCCC
Q 043572 271 KLL---SKEQKVLLL-VDNVGVFVDAHGQPVGG--SLVFR------K-SPDAVGEL--SMY-VVVL-RGGKMELYHKKSG 333 (997)
Q Consensus 271 ~~~---~~~~e~Ll~-~~~~g~fv~~~G~~~r~--~i~w~------~-~P~~i~~~--~PY-ll~~-~~~~ieI~~~~~~ 333 (997)
.++ |+++-.+++ +++.+.|++..|...+. .|.-. . -.+++-+. .|= |++- .+..|.|++..+-
T Consensus 455 TAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 455 TAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred eeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 333 444334444 78899999988764332 12111 0 01222222 221 4444 3678999999887
Q ss_pred ceEEEEe-cCCCCCCCceecccccCCCcEEEEEc-CCe--EEEEeecC
Q 043572 334 ICVQAVT-FGGEGGGQCIATDEECGAGKLLVVAT-PTK--VICYQKVP 377 (997)
Q Consensus 334 ~lvQ~i~-~~~~~~~~~i~~~~~~~~g~~~~v~s-~~~--V~~l~~~~ 377 (997)
.+++... +.+. +..+.+.|.. +|+.++.+| ++. ||.+..-+
T Consensus 535 ~lv~KfKG~~n~--~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 535 DLVHKFKGFRNT--SSQISASFSS-DGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred hhhhhhcccccC--CcceeeeEcc-CCCEEEEeecCceEEEEeCCCCc
Confidence 8877764 3332 1224444443 456455555 333 44444333
No 140
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=82.06 E-value=29 Score=36.44 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=59.0
Q ss_pred ccccccCC-CCCCCccce--eeeeEEee-cCCeEEEE-cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCC
Q 043572 15 LSQFDLSH-YSRSSPIRS--LSISPISD-CQVLIYIG-TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89 (997)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~--~~I~ci~~-~~~~l~iG-T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (997)
.-|||+.. .-|...+.. ..|.-+.. .+++-++. |++|.+.++.+.... .++.. ..+.
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----------~v~sL-------~~~s 185 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----------EVQSL-------EFNS 185 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----------EEEEE-------ecCC
Confidence 34778632 223333333 46665554 35554554 999999999887543 22222 2678
Q ss_pred cceEEEeecccCcEEEEecC-CeEEEeecCcccccc
Q 043572 90 PVESIFVLDDVGKVLLLFCD-QCLFLTDSLLTQPLK 124 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d-~~l~~~~l~~l~~~~ 124 (997)
+|+.+.+.++.. +|. +++ +.|.+|+-.+|.++.
T Consensus 186 ~VtSlEvs~dG~-ilT-ia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 186 PVTSLEVSQDGR-ILT-IAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred CCcceeeccCCC-EEE-EecCceeEEecccccccee
Confidence 999999988877 777 554 599999998887764
No 141
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.82 E-value=1.1e+02 Score=37.06 Aligned_cols=267 Identities=13% Similarity=0.083 Sum_probs=134.9
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|.+. .++.||.....+.+-.|.++...- .+..+. ++.+||--|.+.|....+-..=+|
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~--------------irswKa--~He~Pvi~ma~~~~g~LlAtggaD 126 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKL--------------IRSWKA--IHEAPVITMAFDPTGTLLATGGAD 126 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEcccchH--------------hHhHhh--ccCCCeEEEEEcCCCceEEecccc
Confidence 46777553 456788888888888888876531 111111 368899999999999633333468
Q ss_pred CeEEEeecCccccccccccccc-eEEEEeecccC-------CccccccccccccccccccCCcccchhhhhccCcccc-C
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTS-------DSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA-N 180 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~ 180 (997)
+.+.+|++..-.-++.....+| |+.+.-+++.. .++.+..+= +. .. ..+ .+.....|-++ .
T Consensus 127 ~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw-nl----~~--~~t---cl~~~~~H~S~vt 196 (775)
T KOG0319|consen 127 GRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW-NL----ND--KRT---CLHTMILHKSAVT 196 (775)
T ss_pred ceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE-Ec----cc--Cch---HHHHHHhhhhhee
Confidence 8999999876444444455555 34444444332 111111110 00 00 000 01111122111 2
Q ss_pred CccchhcccccCCceEEEEEECce-EEEEEEeCCeEEEEEeEecCCcceEEEEeCC-------E-EEEEECCcEEEEEec
Q 043572 181 GVKVKEEEQHCRGDNVFAVIIGKR-LVLIELVNGSFVILKEIQCMDGVKTMVWLND-------S-IIVGTVNGYSLFSCV 251 (997)
Q Consensus 181 g~~~~~~~~~~~~~~~l~Va~kkk-i~i~~~~~~~~~~~kei~~~~~~~~l~~~~~-------~-l~vg~~~~y~lidl~ 251 (997)
|+-..+ ++.. +.-+.+.| +.+|.+.. .+..+-+++.+.+-++.+..+ . +-+|....+.++|.+
T Consensus 197 sL~~~~-----d~~~-~ls~~RDkvi~vwd~~~--~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e 268 (775)
T KOG0319|consen 197 SLAFSE-----DSLE-LLSVGRDKVIIVWDLVQ--YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE 268 (775)
T ss_pred eeeecc-----CCce-EEEeccCcEEEEeehhh--hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc
Confidence 222111 2222 33344444 45666632 344444555555555555533 3 555566778888887
Q ss_pred CCcceeeecCC-CCCCCCceEEcCCCCeEE-EEeCCeEEEEcc-CCCccccccccCCCCCeEEEeC---cEEEEEE-CCe
Q 043572 252 TGQSGVIFTLP-DVSCPPMLKLLSKEQKVL-LLVDNVGVFVDA-HGQPVGGSLVFRKSPDAVGELS---MYVVVLR-GGK 324 (997)
Q Consensus 252 ~g~~~~l~~~~-~~~~~p~i~~~~~~~e~L-l~~~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~~---PYll~~~-~~~ 324 (997)
+|...-.-..+ ++.... +..+.....++ +..+...++++. ++.+++.-+-.++....+.+.. -|+.+.+ ...
T Consensus 269 s~~~~~~~~~~~~~e~~~-~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 269 SGKCVYKQRQSDSEEIDH-LLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred cchhhhhhccCCchhhhc-ceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence 66432221111 111111 22222233444 445556666764 4555543344555566666666 4776665 457
Q ss_pred EEEEecCCC
Q 043572 325 MELYHKKSG 333 (997)
Q Consensus 325 ieI~~~~~~ 333 (997)
+.+|...+.
T Consensus 348 lr~y~~~~~ 356 (775)
T KOG0319|consen 348 LRLYTLPTS 356 (775)
T ss_pred eEEEecCCC
Confidence 788865553
No 142
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.61 E-value=65 Score=37.84 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=49.3
Q ss_pred CCCCCccceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc
Q 043572 23 YSRSSPIRSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV 100 (997)
Q Consensus 23 ~~~~~~~~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~ 100 (997)
....+.+..+.|+++... |..|.|||.+|.+..|...+...- +.. .-+-...+.++.=.
T Consensus 209 v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~------------~~~-------~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 209 VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT------------RTL-------RGSHASRVGSLAWN 269 (484)
T ss_pred eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc------------ccc-------cCCcCceeEEEecc
Confidence 334455556788888865 889999999999999988765420 011 11123345555444
Q ss_pred CcEEEEec-CCeEEEeecCcccc
Q 043572 101 GKVLLLFC-DQCLFLTDSLLTQP 122 (997)
Q Consensus 101 ~~lLv~l~-d~~l~~~~l~~l~~ 122 (997)
+..+.+-+ |+.+..+++..-+.
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CceEEEecCCCcEEEEEEecchh
Confidence 43333222 45888888876543
No 143
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=80.06 E-value=99 Score=35.36 Aligned_cols=230 Identities=15% Similarity=0.143 Sum_probs=111.1
Q ss_pred ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCCeEEEeec
Q 043572 39 DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQCLFLTDS 117 (997)
Q Consensus 39 ~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~~l~~~~l 117 (997)
..|+.+|+.+.+|.+-.+...... ..+.++ .+..+ ..|.+-++...++|+- .++++.+++.
T Consensus 46 ~Dgr~~yv~~rdg~vsviD~~~~~--------------~v~~i~---~G~~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 46 PDGRYLYVANRDGTVSVIDLATGK--------------VVATIK---VGGNP-RGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp T-SSEEEEEETTSEEEEEETTSSS--------------EEEEEE----SSEE-EEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred CCCCEEEEEcCCCeEEEEECCccc--------------EEEEEe---cCCCc-ceEEEcCCCCEEEEEecCCCceeEecc
Confidence 347789999999987666555322 111122 35544 5578888888666632 2579999999
Q ss_pred Ccccccccccc--c-------cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 118 LLTQPLKKLGF--L-------KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 118 ~~l~~~~~~~~--~-------kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
.+++++..++- . |.+..++.
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s--------------------------------------------------- 136 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVAS--------------------------------------------------- 136 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE----------------------------------------------------
T ss_pred ccccceeecccccccccccCCCceeEEec---------------------------------------------------
Confidence 99887653211 0 00011110
Q ss_pred cccCCceEEEEEECc--eEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--EEEEEE--CCcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVIIGK--RLVLIELVNGSFVILKEIQCMDGVKTMVWLND--SIIVGT--VNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~kk--ki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~l~vg~--~~~y~lidl~~g~~~~l~~~~ 262 (997)
......+++.|. +|.+..+.+......+.+.....+....|..+ .+++|. .+...++|..++...-+++.+
T Consensus 137 ---~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 137 ---PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp ---SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred ---CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 112335667775 45555555443444456656666777777743 466763 356778888877666666664
Q ss_pred CCCCCCceEEcC--CCCeEEEEeC--CeE-EEEccC---------CCccccccccCCCCCeEEEe--CcEEEEE---EC-
Q 043572 263 DVSCPPMLKLLS--KEQKVLLLVD--NVG-VFVDAH---------GQPVGGSLVFRKSPDAVGEL--SMYVVVL---RG- 322 (997)
Q Consensus 263 ~~~~~p~i~~~~--~~~e~Ll~~~--~~g-~fv~~~---------G~~~r~~i~w~~~P~~i~~~--~PYll~~---~~- 322 (997)
....+-....++ ..+-+--... .+. -.++.+ .+.. .+|.-.+.|..+..+ .||+.+- .+
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv-~~I~~~G~glFi~thP~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV-KTIPTQGGGLFIKTHPDSRYVWVDTFLNPD 292 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE-EEEE-SSSS--EE--TT-SEEEEE-TT-SS
T ss_pred ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE-EEEECCCCcceeecCCCCccEEeeccCCCC
Confidence 322111122121 1111111111 111 112211 1111 134445666444443 5688876 22
Q ss_pred -CeEEEEecCCCceEEEEec
Q 043572 323 -GKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 323 -~~ieI~~~~~~~lvQ~i~~ 341 (997)
+.|.|++..+...+.+|..
T Consensus 293 ~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 293 ADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp HT-EEEEECCGTEEEE-HHH
T ss_pred CceEEEEECcCcceeEEEec
Confidence 6899999999887777753
No 144
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=79.70 E-value=1.8e+02 Score=36.84 Aligned_cols=26 Identities=42% Similarity=0.378 Sum_probs=19.2
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
+..++..|...|++++|++++.+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577778888888888888777654
No 145
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=79.53 E-value=1.3e+02 Score=35.07 Aligned_cols=231 Identities=14% Similarity=0.096 Sum_probs=140.6
Q ss_pred cceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 29 IRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 29 ~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
+++-++-|+-. .++|..=+-+|.|-.|+....+. .+... =+.|+|+-+.+.++...++-+-.
T Consensus 279 v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~--------------~~~i~---GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 279 VEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSV--------------LKVIS---GHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred hhceEEEEEEe-CCeEEEEEcCcEEEEecccCCCh--------------hheec---ccccceeEEEEcCCCCEEEeecc
Confidence 55667778776 66677778889776555544331 11111 16789999999999987777666
Q ss_pred CCeEEEeecCcccccccccccc--ceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLK--GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~k--g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
||++.-|++..-..-.-.++.. -++.++..
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~------------------------------------------------ 372 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS------------------------------------------------ 372 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeec------------------------------------------------
Confidence 9999999875421100000000 01111100
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--EEEEEECCcEEEEEecCCcceeeecCCCC
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND--SIIVGTVNGYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~l~vg~~~~y~lidl~~g~~~~l~~~~~~ 264 (997)
+....+.+...+.+.+..+.++.+....-+.++..|+.++...+ .+.+++-++..++.-.++ ....++
T Consensus 373 -----~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~--~~~~~~--- 442 (603)
T KOG0318|consen 373 -----ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK--VSSIPI--- 442 (603)
T ss_pred -----CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc--ceeecc---
Confidence 11124566777888887777666665544667888889888865 788889999888873322 222222
Q ss_pred CCCCceEEc-CCCCeEEEE-eCCeEEEEccCCCcccc---ccccCCCCCeEEEeCc--EEEEE-ECCeEEEEecCCCce
Q 043572 265 SCPPMLKLL-SKEQKVLLL-VDNVGVFVDAHGQPVGG---SLVFRKSPDAVGELSM--YVVVL-RGGKMELYHKKSGIC 335 (997)
Q Consensus 265 ~~~p~i~~~-~~~~e~Ll~-~~~~g~fv~~~G~~~r~---~i~w~~~P~~i~~~~P--Yll~~-~~~~ieI~~~~~~~l 335 (997)
+..|..+.+ ++..++.++ -|.-...+...|.-... .+.-...++.++|..- |+.+- ..+.+-+|++.+...
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 233444444 456688887 44556667777754322 3455666777777533 66654 467899999887654
No 146
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=79.36 E-value=1.2e+02 Score=34.61 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=84.4
Q ss_pred EEEEEECc-eEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEE--CCcEEEEEecCCcceeeecCCCC---CCC
Q 043572 196 VFAVIIGK-RLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDV---SCP 267 (997)
Q Consensus 196 ~l~Va~kk-ki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~---~~~ 267 (997)
.++|+.+. .|.++... ..+.++++.....+..+++. |..+++|+ .+.+.++|.+|.+....++..+. ...
T Consensus 50 ~~yv~~rdg~vsviD~~--~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~ 127 (369)
T PF02239_consen 50 YLYVANRDGTVSVIDLA--TGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPE 127 (369)
T ss_dssp EEEEEETTSEEEEEETT--SSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS-
T ss_pred EEEEEcCCCeEEEEECC--cccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccC
Confidence 46666554 34454443 34577888888888888775 56788884 57999999888776655555421 122
Q ss_pred Cc---eEEcCCCCeEEEEeC--CeEEEEccCC-Ccccc-ccccCCCCCeEEEeCc--EEEEE--ECCeEEEEecCCCceE
Q 043572 268 PM---LKLLSKEQKVLLLVD--NVGVFVDAHG-QPVGG-SLVFRKSPDAVGELSM--YVVVL--RGGKMELYHKKSGICV 336 (997)
Q Consensus 268 p~---i~~~~~~~e~Ll~~~--~~g~fv~~~G-~~~r~-~i~w~~~P~~i~~~~P--Yll~~--~~~~ieI~~~~~~~lv 336 (997)
+. |..-+..++|+++-. +...++|... .+... .+.=...|....+... |+++- .++.|-|.+..++.++
T Consensus 128 ~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 128 SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp --EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 32 333355668998843 3455677533 22221 3444567778777754 66653 4688999999998888
Q ss_pred EEEec
Q 043572 337 QAVTF 341 (997)
Q Consensus 337 Q~i~~ 341 (997)
..+..
T Consensus 208 ~~i~~ 212 (369)
T PF02239_consen 208 ALIDT 212 (369)
T ss_dssp EEEE-
T ss_pred EEeec
Confidence 77765
No 147
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.24 E-value=1.2 Score=45.76 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=39.1
Q ss_pred CCcCccccCccCCcc--EEEcCCCeEEEecccccc--CcccCC-CCCCCCCcc
Q 043572 940 ESLCDSCHARLGTKL--FAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDV 987 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~--f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~ 987 (997)
...|++|+-.|.+.. .+.-|+||||.+.|..+. ...+|| |++..+-.-
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 357999999998743 556799999999999986 578999 999886544
No 148
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=77.85 E-value=0.9 Score=48.84 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=34.4
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC--cccCC-CCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--ESTSI-TGRDF 983 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--~~~~~-t~~~f 983 (997)
....|++|-|+..+ +-|++-.|-||+|.|.-++. .+.|| ||-.-
T Consensus 299 ~~~~CpvClk~r~N-ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQN-PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCC-CceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 45799999999987 34567789999999999873 34588 98654
No 149
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.08 E-value=1.2e+02 Score=36.88 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=102.2
Q ss_pred eeeeEEeecCC----eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISDCQV----LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~~~----~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
.-|.++..+.+ -|+.|..||.+..|++....+. .. +. + ..++.|+.+...++..-+|- .
T Consensus 148 GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc----------l~-~~--~---~H~S~vtsL~~~~d~~~~ls-~ 210 (775)
T KOG0319|consen 148 GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC----------LH-TM--I---LHKSAVTSLAFSEDSLELLS-V 210 (775)
T ss_pred ceEEEEEeCCccchhheeecCCCceEEEEEcccCchH----------HH-HH--H---hhhhheeeeeeccCCceEEE-e
Confidence 46667776655 3689999999999999865420 10 11 1 26778999999988664554 5
Q ss_pred c-CCeEEEeecCcccc---cccccccc------------ceEEEEeecccCCccccccccccccccccccCCcccchhhh
Q 043572 108 C-DQCLFLTDSLLTQP---LKKLGFLK------------GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQ 171 (997)
Q Consensus 108 ~-d~~l~~~~l~~l~~---~~~~~~~k------------g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 171 (997)
+ |+.+.+|++-..+. +|.-..+. |--.++...... +.-.. +++++-.+.
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~------------~~~~d---~es~~~~~~ 275 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGV------------VQYWD---SESGKCVYK 275 (775)
T ss_pred ccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCce------------EEEEe---cccchhhhh
Confidence 4 78999999965331 11111111 222333221110 00000 001110010
Q ss_pred hccCcc-ccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC---CEEEEEECC-cE
Q 043572 172 KFGSGI-KANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN---DSIIVGTVN-GY 245 (997)
Q Consensus 172 ~~~~~~-~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~---~~l~vg~~~-~y 245 (997)
.--+-+ .+.++- +-.+....++|.....+++|.... .+..+.|. ..+.|..|.+.| +.+.||+.+ ++
T Consensus 276 ~~~~~~~e~~~~~-----~~~~~~~~l~vtaeQnl~l~d~~~--l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 276 QRQSDSEEIDHLL-----AIESMSQLLLVTAEQNLFLYDEDE--LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred hccCCchhhhcce-----eccccCceEEEEccceEEEEEccc--cEEehhhcCCchhheeeeecCCccceEEEEeCCCce
Confidence 000000 001111 111233467778888899986543 56666544 467889999998 679999764 78
Q ss_pred EEEEecCCcce
Q 043572 246 SLFSCVTGQSG 256 (997)
Q Consensus 246 ~lidl~~g~~~ 256 (997)
.++++.+...+
T Consensus 349 r~y~~~~~~c~ 359 (775)
T KOG0319|consen 349 RLYTLPTSYCQ 359 (775)
T ss_pred EEEecCCCceE
Confidence 88888754433
No 150
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=76.63 E-value=1.4e+02 Score=33.94 Aligned_cols=225 Identities=12% Similarity=0.136 Sum_probs=117.3
Q ss_pred eeeEEeecC--CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDCQ--VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~~--~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
-|++++-.. +++.-|..|-....|+...+. ....++. +.++|.....-|...-++...+|.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--------------~l~~~~G---h~kki~~v~~~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--------------ILATLKG---HTKKITSVKFHKDLDTVITASADE 283 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhh--------------hhhhccC---cceEEEEEEeccchhheeecCCcc
Confidence 456666555 788999999877777665432 1222222 566788888777777666666788
Q ss_pred eEEEeecCccccccccccc-cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLGFL-KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~~-kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
.+++|+.+.-+....+... ..|+...+++
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-------------------------------------------------- 313 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-------------------------------------------------- 313 (506)
T ss_pred eEEeeccccccCccccccccccceeeeecc--------------------------------------------------
Confidence 9999987653211000000 0122222111
Q ss_pred ccCCceEEEEEECce-EEEEEEeCC-eEEEEEeEecCCcceEEEEeCCEEEEEEC---CcEEEEEecCCcceeeecCCCC
Q 043572 190 HCRGDNVFAVIIGKR-LVLIELVNG-SFVILKEIQCMDGVKTMVWLNDSIIVGTV---NGYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 190 ~~~~~~~l~Va~kkk-i~i~~~~~~-~~~~~kei~~~~~~~~l~~~~~~l~vg~~---~~y~lidl~~g~~~~l~~~~~~ 264 (997)
++.+ +.-|-.++ ..++.+..+ .+..+..-...=...+..|..|.+.+|+. ....++|+.++....-||.-.
T Consensus 314 --tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght- 389 (506)
T KOG0289|consen 314 --TGEY-LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT- 389 (506)
T ss_pred --CCcE-EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC-
Confidence 1223 33344444 334444444 33332211111135888999888777754 368889998777666676532
Q ss_pred CCCCc-eEEcCCCCeEEEE-eCCeEEE-EccCCCccccccccCCC--CCeEEEe--CcEEEEEECCeEEEEecC
Q 043572 265 SCPPM-LKLLSKEQKVLLL-VDNVGVF-VDAHGQPVGGSLVFRKS--PDAVGEL--SMYVVVLRGGKMELYHKK 331 (997)
Q Consensus 265 ~~~p~-i~~~~~~~e~Ll~-~~~~g~f-v~~~G~~~r~~i~w~~~--P~~i~~~--~PYll~~~~~~ieI~~~~ 331 (997)
.|+ -..++.++-+|++ .|+..++ -|..-...=+++...+. ..++.++ .-|+.+. .+.+.||...
T Consensus 390 --~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~ 460 (506)
T KOG0289|consen 390 --GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICK 460 (506)
T ss_pred --CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEe
Confidence 121 2344556666655 4444343 33221111124544432 2223332 3355544 6677777654
No 151
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.13 E-value=0.95 Score=51.34 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=33.3
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC--cccCCCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--ESTSITGRD 982 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--~~~~~t~~~ 982 (997)
+...-.|++|...+...+ +.||||.|+..|..... ...||+|+-
T Consensus 23 Le~~l~C~IC~d~~~~Pv--itpCgH~FCs~CI~~~l~~~~~CP~Cr~ 68 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPV--LTSCSHTFCSLCIRRCLSNQPKCPLCRA 68 (397)
T ss_pred cccccCCCcCchhhhCcc--CCCCCCchhHHHHHHHHhCCCCCCCCCC
Confidence 556789999998876543 57999999999998642 235996543
No 152
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=76.07 E-value=85 Score=36.02 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=84.2
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--------c
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--------V 100 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--------~ 100 (997)
.++|+|+... +..|.-.++||+|-.+........+.. .. ..|.|-.|.-.|. -
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l----------~~-------Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL----------QA-------HSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh----------hh-------hccceeeEeecCCCCccCCCcC
Confidence 3699999976 456667789999988887654421110 00 1222333333322 2
Q ss_pred -CcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccc
Q 043572 101 -GKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIK 178 (997)
Q Consensus 101 -~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 178 (997)
-+++-+..|++|.+|+.....|++.+. -..+|..++..+ +
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-------------------------~------------- 463 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-------------------------N------------- 463 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-------------------------C-------------
Confidence 245555779999999998888876542 223344333211 1
Q ss_pred cCCccchhcccccCCceEEEE-EECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEEC-CcEEEEEec
Q 043572 179 ANGVKVKEEEQHCRGDNVFAV-IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCV 251 (997)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~l~V-a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~ 251 (997)
+ .+++- -..+.|.++.... -+.+++..-.+.|-.++|. |+.|+++.+ ....++|+.
T Consensus 464 --------------g-~ylAsGs~dg~V~iws~~~--~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 --------------G-RYLASGSLDGCVHIWSTKT--GKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred --------------C-cEEEecCCCCeeEeccccc--hheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 1 11211 1233445544433 3455666555667888888 677888754 467777763
No 153
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.05 E-value=3.7 Score=45.55 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=31.3
Q ss_pred cCccccCccCC-ccEEEcCCCeEEEecccccc---CcccCCCCC
Q 043572 942 LCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ---GESTSITGR 981 (997)
Q Consensus 942 ~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~---~~~~~~t~~ 981 (997)
.|++|-..... ....+-||+|.||..|...- ....||.|+
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK 274 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCK 274 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCC
Confidence 89999887754 45778999999999999864 345588554
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=75.84 E-value=62 Score=38.35 Aligned_cols=171 Identities=11% Similarity=0.088 Sum_probs=93.1
Q ss_pred eEEEEEECce-EEEEEEeCC-----eEEEEEeEec-CCcceEEEEe---CCEEEEE-ECCcEEEEEecCCcceeeecCCC
Q 043572 195 NVFAVIIGKR-LVLIELVNG-----SFVILKEIQC-MDGVKTMVWL---NDSIIVG-TVNGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 195 ~~l~Va~kkk-i~i~~~~~~-----~~~~~kei~~-~~~~~~l~~~---~~~l~vg-~~~~y~lidl~~g~~~~l~~~~~ 263 (997)
-+++||+... |.+|++..+ .....+++.. .+.|.++.|. .|.|.++ +.....+.|+.++.-..-+.--.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt 720 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT 720 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc
Confidence 3688888765 779988754 2334455543 3467888888 3666676 66789999998764322221100
Q ss_pred CCCCCceEEcCCCCeEEEEeCCeEEEEccCCC--c---------ccc-ccccCCCCCeEEEeCcEEEEEE-----CCeEE
Q 043572 264 VSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQ--P---------VGG-SLVFRKSPDAVGELSMYVVVLR-----GGKME 326 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~--~---------~r~-~i~w~~~P~~i~~~~PYll~~~-----~~~ie 326 (997)
.+.--+.+..++..---+|.|+....++..-. + +|+ .|.| ++..-||++.. +..|.
T Consensus 721 dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w-------acdgr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 721 DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW-------ACDGRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEE-------EecCcEEEEecccccchhhhh
Confidence 01001111112111223677777776664321 1 333 4555 77788888764 45788
Q ss_pred EEecCCCc--e--EEEEecCCCCCCCceecccccCCCcEEEEEc--CCeEEEEeecC
Q 043572 327 LYHKKSGI--C--VQAVTFGGEGGGQCIATDEECGAGKLLVVAT--PTKVICYQKVP 377 (997)
Q Consensus 327 I~~~~~~~--l--vQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s--~~~V~~l~~~~ 377 (997)
+|+.++.. . .|.+.... ..++..|+- +.+++++.. ++.|+++..++
T Consensus 794 ~Y~Aq~l~~~pl~t~~lDvap----s~LvP~YD~-Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 794 MYDAQTLDLRPLYTQVLDVAP----SPLVPHYDY-DSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred hhhhhhccCCcceeeeecccC----ccccccccC-CCceEEEecCCCceEEEEEecC
Confidence 88876533 2 46655432 223333332 224444443 45677766554
No 155
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=74.89 E-value=2.8 Score=33.47 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=22.0
Q ss_pred CccccCccCCccEEEcCCCeEEEecccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
|+.|+++|......+-..|..+|..|..
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~ 28 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECFK 28 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTSB
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccccc
Confidence 7888998887666655678888888876
No 156
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.70 E-value=1.3e+02 Score=32.46 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=78.7
Q ss_pred EEEEEeEecCCcc--eEEEE-eCCEEEEEEC----CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE-eCCe
Q 043572 215 FVILKEIQCMDGV--KTMVW-LNDSIIVGTV----NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL-VDNV 286 (997)
Q Consensus 215 ~~~~kei~~~~~~--~~l~~-~~~~l~vg~~----~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~-~~~~ 286 (997)
+..+++++..... +.+.+ .++.++.++. +....+|+.||++..-.+.+..-..--|+.++ +.-+.|+ .++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCe
Confidence 4455555433333 77888 5678998876 36778999999876665554322223355554 3356666 6789
Q ss_pred EEEEccCCCccccccccCCCCCeEEEeCcEEEEE-ECCeEEEEecCCCceEEEEecCC
Q 043572 287 GVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVL-RGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 287 g~fv~~~G~~~r~~i~w~~~P~~i~~~~PYll~~-~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
|+.+|.+-=...+++.++...-.++.+.-.+++- .++.|..++..+.+.+.+|.+..
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred EEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 9999976322224667777777788777766644 46789999999999998888754
No 157
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.32 E-value=30 Score=40.20 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=33.2
Q ss_pred HHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchH
Q 043572 802 AILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDA 840 (997)
Q Consensus 802 ~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l 840 (997)
.-+|-|+|+|.+|+..++ .+++.+.+.+||....++..
T Consensus 248 ~~IYlk~~~lt~av~~ai-Rl~~~~~i~e~~~a~~Dp~~ 285 (881)
T COG5110 248 LKIYLKMGDLTRAVVGAI-RLQKSKEIIEYVRAIEDPDY 285 (881)
T ss_pred HHHHHhhhHHHHHHHHHH-hcccHHHHHHHHHhccChHH
Confidence 357889999999999999 79999999999999877643
No 158
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=73.61 E-value=1.6 Score=32.15 Aligned_cols=29 Identities=21% Similarity=0.587 Sum_probs=24.4
Q ss_pred CccccCccCCccEEEcCCCeEEEecccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
|++|...+.... .+.||||.|+..|+.+.
T Consensus 1 C~iC~~~~~~~~-~~~~C~H~fC~~C~~~~ 29 (41)
T PF00097_consen 1 CPICLEPFEDPV-ILLPCGHSFCRDCLRKW 29 (41)
T ss_dssp ETTTSSBCSSEE-EETTTSEEEEHHHHHHH
T ss_pred CCcCCccccCCC-EEecCCCcchHHHHHHH
Confidence 789998877543 68999999999999875
No 159
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.45 E-value=91 Score=32.40 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=39.4
Q ss_pred eEEEEEECceEEEEEEeCCeE-------EEEEe----EecCCcceEEEEeCCEEEEEECCcEEEEEec
Q 043572 195 NVFAVIIGKRLVLIELVNGSF-------VILKE----IQCMDGVKTMVWLNDSIIVGTVNGYSLFSCV 251 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~-------~~~ke----i~~~~~~~~l~~~~~~l~vg~~~~y~lidl~ 251 (997)
-.|.|+.++++.+|++..... ....+ +...-.|+.++++++.|.+.+..+-.++-+.
T Consensus 147 G~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 147 GNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred CCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence 358999999999999875422 11111 1112246889999999999888888777653
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=73.43 E-value=63 Score=38.50 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=52.6
Q ss_pred HHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCC---CCC
Q 043572 579 TLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEE---SSD 655 (997)
Q Consensus 579 ~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~---~~~ 655 (997)
+.+.-.|++++.+.++.+.|.-..||+++..++.-+. +.+++.. .+.
T Consensus 640 ~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~------------------------------aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDY------------------------------AQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHH------------------------------HHHHhhcCChHHH
Confidence 3455568899999999999999999999998874310 1123322 234
Q ss_pred HHHHHHHHhhhhc-cCchhhhhhccc
Q 043572 656 EDLILQHLGWIAD-INAVLAVKVLTS 680 (997)
Q Consensus 656 ~~li~~~~~wll~-~~p~~~l~if~~ 680 (997)
..++.+-+.|--. +-|..|-+++.+
T Consensus 690 KmL~RKRA~WAr~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 690 KMLIRKRADWARNIKEPKAAAEMLIS 715 (1081)
T ss_pred HHHHHHHHHHhhhcCCcHHHHHHhhc
Confidence 6789999999876 457888888876
No 161
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=73.34 E-value=6.6 Score=30.14 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=23.9
Q ss_pred eeeeeEEeecCC--eEEEEcCCceEEEEEeC
Q 043572 31 SLSISPISDCQV--LIYIGTQSGSLILLSLD 59 (997)
Q Consensus 31 ~~~I~ci~~~~~--~l~iGT~~G~ll~y~~~ 59 (997)
...|+|+..+.. -|.+||++|.++.|++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 346888887644 79999999999999984
No 162
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=73.10 E-value=1.6e+02 Score=32.87 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=72.8
Q ss_pred ceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCCCCCCCc-eEEc--CCCCeE
Q 043572 203 KRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPM-LKLL--SKEQKV 279 (997)
Q Consensus 203 kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~-i~~~--~~~~e~ 279 (997)
|++.++.++.+ ..+-|+.+|.++.++.+..++|||.-....+++|+++- ..|..+.....+|. +..+ +.++.+
T Consensus 68 r~Lkv~~~Kk~--~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~M--klLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKK--TTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDM--KLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred ceEEEEEcccC--ceEEEEecCCceEEEEEccceEEEEEcccEEEEecccc--eeehhhhccCCCccceEeeccCCCCce
Confidence 45666665542 44567888999999999999999999999999999753 44433333222232 2333 223345
Q ss_pred EEEeC--CeEEEEccCCCcccc--ccccCCCCC-eEEEe--CcEEEEEECC--eEEEEecCCCceEEEE
Q 043572 280 LLLVD--NVGVFVDAHGQPVGG--SLVFRKSPD-AVGEL--SMYVVVLRGG--KMELYHKKSGICVQAV 339 (997)
Q Consensus 280 Ll~~~--~~g~fv~~~G~~~r~--~i~w~~~P~-~i~~~--~PYll~~~~~--~ieI~~~~~~~lvQ~i 339 (997)
|.-.+ +.|-.+=.+..-.++ +|.=.+.|. .+++. .-+|-..+++ .|.|+++.+|+.++..
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 44322 122221112222222 333222222 33333 2244444433 4888999999988775
No 163
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=72.83 E-value=2.1e+02 Score=34.78 Aligned_cols=37 Identities=14% Similarity=0.016 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHH
Q 043572 573 IVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRV 609 (997)
Q Consensus 573 ~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~ 609 (997)
|.-.++-+|...++......+|...+.+..||.|-+.
T Consensus 1094 d~~kae~fllrankp~i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1094 DFLKAEGFLLRANKPDIALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred chhhhhhheeecCCCchHHHHHHHhccChHHHHHHHh
Confidence 4455667777778888888888899999999988765
No 164
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=72.83 E-value=1.5 Score=46.57 Aligned_cols=40 Identities=23% Similarity=0.624 Sum_probs=30.7
Q ss_pred CcCccccCccCCccEE-EcCCCeEEEeccccccCcccCCCCCC
Q 043572 941 SLCDSCHARLGTKLFA-MYPDDTIVCYKCYRRQGESTSITGRD 982 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~-v~p~g~~~H~~C~~~~~~~~~~t~~~ 982 (997)
--|..|+++|.- .- .-||.|||.+.|++.-....||-|.|
T Consensus 91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~~~dK~Cp~C~d 131 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARSDSDKICPLCDD 131 (389)
T ss_pred EeecccCCccee--eecccccchhhhhhhhhcCccccCcCccc
Confidence 469999998862 11 24999999999999877778995543
No 165
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=72.81 E-value=36 Score=38.04 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=46.8
Q ss_pred EEEEEECceEEEEEEeCCe-EEEEEeEecCCcceEEEEeCCEEEEEEC-CcEEEEEec
Q 043572 196 VFAVIIGKRLVLIELVNGS-FVILKEIQCMDGVKTMVWLNDSIIVGTV-NGYSLFSCV 251 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~-~~~~kei~~~~~~~~l~~~~~~l~vg~~-~~y~lidl~ 251 (997)
+++++..++|.+|+|..+. +...-....+-.+.++...++.|+||.. ++..++..+
T Consensus 100 ~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 100 RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 4899999999999999987 8877777677788999999999999965 678877654
No 166
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.65 E-value=65 Score=32.22 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCCC
Q 043572 703 ILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDL 782 (997)
Q Consensus 703 ~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~ 782 (997)
....|+..+....-...+.++..++.++++. .-...|..||+..-.
T Consensus 12 vllEYirSl~~~~i~~~~~L~~lli~lLi~~----------------------------------~~~~~L~qllq~~Vi 57 (167)
T PF07035_consen 12 VLLEYIRSLNQHNIPVQHELYELLIDLLIRN----------------------------------GQFSQLHQLLQYHVI 57 (167)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------------------------------CCHHHHHHHHhhccc
Confidence 4567777777655556677888876665431 113456667766532
Q ss_pred CC-hHHHHhhccCCC----chHHHHHHHHhhc-chHHHHHHHHHhcCCHHHHHHHHhhc
Q 043572 783 YD-PEDVLDLIEGSE----LWLEKAILYRKLG-QETLVLQILALKLEDSEAAEQYCAEI 835 (997)
Q Consensus 783 yd-~~~~L~~~~~~~----l~~e~~~Ll~klg-~h~eAL~il~~~l~D~~~Ae~yC~~~ 835 (997)
=| ..-+..++.-.. .+.-..=.+.|+| .|++.+++++ .-|++-.|..|+.+.
T Consensus 58 ~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL-~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 58 PDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLL-SKGQVLEALRYARQY 115 (167)
T ss_pred CCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHH-hCCCHHHHHHHHHHc
Confidence 22 233333333221 2333456678999 8999999999 679999999999875
No 167
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.15 E-value=0.83 Score=44.85 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=33.1
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.+|++|=-+.....-+-.-|||+|...|++.. ..+.|||++
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~ 174 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCR 174 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcc
Confidence 58999987777655555789999999999975 467899876
No 168
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.02 E-value=1.3e+02 Score=34.05 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=89.9
Q ss_pred eEEEEEECceEE-EEEEeCC-eEEEEEeE-ecCCcceEEEEeCC-E--EEEEECCcEEEEEecCCcceeeecCCCCCCCC
Q 043572 195 NVFAVIIGKRLV-LIELVNG-SFVILKEI-QCMDGVKTMVWLND-S--IIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPP 268 (997)
Q Consensus 195 ~~l~Va~kkki~-i~~~~~~-~~~~~kei-~~~~~~~~l~~~~~-~--l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p 268 (997)
..++-|.|.+-. +|....+ +|+..+.. ....+|..+.|.-+ + +..|....-.+.|.+||....+++.+ .+..+
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~ 315 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LGFSV 315 (519)
T ss_pred eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cCCCc
Confidence 467878887744 5555544 67766664 34567888999843 3 66667778899999999888888776 22222
Q ss_pred -ceEEcCCCCeEEEEe-CCeEEEEccCCCccccccccCCC--C----CeEEEeCcEEEEEE-CCeEEEEecCCCceEEEE
Q 043572 269 -MLKLLSKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFRKS--P----DAVGELSMYVVVLR-GGKMELYHKKSGICVQAV 339 (997)
Q Consensus 269 -~i~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~~~--P----~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i 339 (997)
.++=.|++-.|+.++ |...+.-+.+|+.. =.|.+. | .++.++.-|+++++ +..|-+++.++..-+-.|
T Consensus 316 ~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~---~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 316 SSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL---GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred ceeEEccCCceeEecCCCCcEEEecCCcchh---hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence 233334444566654 44555567888875 256533 3 24556677888775 567899998775444333
No 169
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=71.76 E-value=2.4 Score=33.05 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.3
Q ss_pred CcCccccCccCCccEEEcCCCeEEEe-ccccccCc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCY-KCYRRQGE 974 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~-~C~~~~~~ 974 (997)
.+|.+|.++|.....+..+.| .+|. -|++-..+
T Consensus 2 ~~CvVCKqpi~~a~~v~T~~G-~VH~g~C~~y~~e 35 (54)
T PF10886_consen 2 EICVVCKQPIDDALVVETESG-PVHPGVCAQYLEE 35 (54)
T ss_pred CeeeeeCCccCcceEEEcCCC-ccCcHHHHHHHHh
Confidence 689999999998766677888 5665 67776543
No 170
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.74 E-value=2.2 Score=46.45 Aligned_cols=46 Identities=13% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCcCccccCccC--Cc-cEEEcCCCeEEEecccccc---CcccCC-CCCCCCC
Q 043572 940 ESLCDSCHARLG--TK-LFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKK 985 (997)
Q Consensus 940 ~~~C~vC~k~l~--~~-~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~ 985 (997)
+..|++|..... ++ .|.+.+|||.+..+|.... ....|| =+..+++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 578999998653 32 2566699999999999874 344699 3344433
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=71.69 E-value=1.4e+02 Score=31.50 Aligned_cols=100 Identities=8% Similarity=0.002 Sum_probs=58.8
Q ss_pred ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 30 RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 30 ~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
.+..|-.+..++..|+.|.. |.++.+...+.......-+ .-.++..+.... ..-.-|+-|.+.|..|.++.+--|
T Consensus 61 hdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~--lwe~~~P~~~~~--~evPeINam~ldP~enSi~~AgGD 135 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKR--LWEVKIPMQVDA--VEVPEINAMWLDPSENSILFAGGD 135 (325)
T ss_pred cCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchh--hhhhcCccccCc--ccCCccceeEeccCCCcEEEecCC
Confidence 34567778888888888776 9999887765442111100 000111111101 233469999999999977664556
Q ss_pred CeEEEeecCccccccccccccceEEEEe
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAK 137 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~ 137 (997)
+.+|.+++..-. -....||.+....
T Consensus 136 ~~~y~~dlE~G~---i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 136 GVIYQVDLEDGR---IQREYRGHTDYVH 160 (325)
T ss_pred eEEEEEEecCCE---EEEEEcCCcceee
Confidence 699999875521 1234677665553
No 172
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=71.51 E-value=1.3e+02 Score=30.94 Aligned_cols=67 Identities=12% Similarity=0.246 Sum_probs=42.0
Q ss_pred CCCCeEEEEeCC---eEEEEccCCCccccccccCCCCCeEEEeCc---EEEEEE----CCeEEEEecCCCceEEEEecCC
Q 043572 274 SKEQKVLLLVDN---VGVFVDAHGQPVGGSLVFRKSPDAVGELSM---YVVVLR----GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 274 ~~~~e~Ll~~~~---~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P---Yll~~~----~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
|.+++|+++++. ...++|..|++.. .....+.+-+...| |+++.. ++.|++.++.+...+.+.....
T Consensus 69 P~g~~favi~g~~~~~v~lyd~~~~~i~---~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~ 145 (194)
T PF08662_consen 69 PNGNEFAVIYGSMPAKVTLYDVKGKKIF---SFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD 145 (194)
T ss_pred cCCCEEEEEEccCCcccEEEcCcccEeE---eecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc
Confidence 445689888653 5777887766542 23333443333444 666543 3579999999888887765443
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=71.36 E-value=60 Score=39.07 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=50.6
Q ss_pred eeeeEEee---cCCeEEEEcCCceEEE-EEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISD---CQVLIYIGTQSGSLIL-LSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~---~~~~l~iGT~~G~ll~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..+++++. ..++.+|||+.|.+++ .+..-.+..+ . .+ ..+.. +. .+..+|.-|.--|-...+..+-
T Consensus 348 ~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~-~~---~~~~~-~~----~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 348 VGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-V-SY---KGHST-FI----THIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-c-cc---ccccc-cc----ccCcceEeeecCCCccceeeee
Confidence 45566554 3668999999999876 4433332210 0 00 00100 00 2566888888888877666656
Q ss_pred cCCeEEEeecC-cccccc
Q 043572 108 CDQCLFLTDSL-LTQPLK 124 (997)
Q Consensus 108 ~d~~l~~~~l~-~l~~~~ 124 (997)
+|.++.+|+.. ...|+.
T Consensus 418 gDW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLL 435 (555)
T ss_pred ccceeEeccccCCCCcch
Confidence 68899999987 555654
No 174
>PLN03218 maturation of RBCL 1; Provisional
Probab=71.30 E-value=3.4e+02 Score=35.81 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcC------ChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 544 GVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESG------HLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 544 ~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~------~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
..-++|+.+|.+.++.++..++. +.+.+.+ -|..|+..|.+.|++++|++++.++...
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf------------~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVY------------QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 44567888888877643333322 1222222 3788999999999999999999987754
No 175
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=70.77 E-value=23 Score=39.61 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=44.5
Q ss_pred ceEEEEEEeCC-----eEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCc
Q 043572 203 KRLVLIELVNG-----SFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQ 254 (997)
Q Consensus 203 kki~i~~~~~~-----~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~ 254 (997)
-+|.+|++... +++.+.+...+++|.+++-.++.|++|..+...++++....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 56889999874 77777777789999999999999999999999999998766
No 176
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=70.54 E-value=2.1 Score=43.29 Aligned_cols=37 Identities=14% Similarity=0.414 Sum_probs=28.5
Q ss_pred CcEEEcCCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 933 RHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 933 ~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
+-+...+.-.|++|...+... ++.+|||+|+..|+..
T Consensus 11 ~~~~~~~~~~CpICld~~~dP--VvT~CGH~FC~~CI~~ 47 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDP--VVTLCGHLFCWPCIHK 47 (193)
T ss_pred eeccCCCccCCccCCCcCCCc--EEcCCCchhHHHHHHH
Confidence 334455678999999987653 4579999999999964
No 177
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=70.40 E-value=1.5 Score=37.94 Aligned_cols=47 Identities=6% Similarity=0.202 Sum_probs=32.8
Q ss_pred EcCCCcCccccCccC-----------CccEEEcCCCeEEEecccccc-----CcccCC-CCCCC
Q 043572 937 INDESLCDSCHARLG-----------TKLFAMYPDDTIVCYKCYRRQ-----GESTSI-TGRDF 983 (997)
Q Consensus 937 I~~~~~C~vC~k~l~-----------~~~f~v~p~g~~~H~~C~~~~-----~~~~~~-t~~~f 983 (997)
|..+..|.+|..++. +-++++..|+|.||.+|+.+- ....|| =.+.|
T Consensus 18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 445777887777774 236888889999999998752 235688 44444
No 178
>KOG4328 consensus WD40 protein [Function unknown]
Probab=69.92 E-value=1.1e+02 Score=35.15 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=45.8
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec--CCeEEEeecC
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC--DQCLFLTDSL 118 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~--d~~l~~~~l~ 118 (997)
...+++|+.-|.+-++...-+.+.. ..++ +++++|..|.+=|-.-..++ -| |+++.+|++-
T Consensus 291 ~~~vl~~~~~G~f~~iD~R~~~s~~-------------~~~~---lh~kKI~sv~~NP~~p~~la-T~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 291 SRSVLFGDNVGNFNVIDLRTDGSEY-------------ENLR---LHKKKITSVALNPVCPWFLA-TASLDQTAKIWDLR 353 (498)
T ss_pred CccEEEeecccceEEEEeecCCccc-------------hhhh---hhhcccceeecCCCCchhee-ecccCcceeeeehh
Confidence 4578999999966565555443311 1111 47779999999888776666 43 7799999998
Q ss_pred ccccc
Q 043572 119 LTQPL 123 (997)
Q Consensus 119 ~l~~~ 123 (997)
.+.+-
T Consensus 354 ~l~~K 358 (498)
T KOG4328|consen 354 QLRGK 358 (498)
T ss_pred hhcCC
Confidence 87653
No 179
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=69.57 E-value=1.5e+02 Score=35.03 Aligned_cols=99 Identities=9% Similarity=0.132 Sum_probs=58.8
Q ss_pred eEEEEEECc-eEEEEEEeCCeEEEEEeEecCCcceEEEEeCC----EEEEEECCcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 195 NVFAVIIGK-RLVLIELVNGSFVILKEIQCMDGVKTMVWLND----SIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 195 ~~l~Va~kk-ki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~----~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
..++|++.. .++||-+........|.--..-+++.+.|... .|+-..++-..|.|-.+|.....+.+.. .. ..
T Consensus 241 L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-~l-ND 318 (703)
T KOG2321|consen 241 LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS-DL-ND 318 (703)
T ss_pred eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC-Cc-Cc
Confidence 457777665 48899887765556665444446789999743 3444455567777777775443332221 11 23
Q ss_pred eEEcCCCCeEEEEeCC--e-EEEEccCCC
Q 043572 270 LKLLSKEQKVLLLVDN--V-GVFVDAHGQ 295 (997)
Q Consensus 270 i~~~~~~~e~Ll~~~~--~-g~fv~~~G~ 295 (997)
++.+++.+.|+++.++ | ..|+-.-|.
T Consensus 319 ~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 319 FCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred eeeecCCceEEEecCCCcceeEEccccCC
Confidence 5566666788888664 3 444544454
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=86 Score=35.38 Aligned_cols=73 Identities=10% Similarity=0.010 Sum_probs=54.0
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
++-|+-..|..|-.|..||.+..+..+...+ .. ... -+.+-|+.|..-|+.. +|+.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----------~l---~e~----~~~~eV~DL~FS~dgk-~lasig~d~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----------IL---EEI----AHHAEVKDLDFSPDGK-FLASIGADSA 209 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh----------hh---hhH----hhcCccccceeCCCCc-EEEEecCCce
Confidence 6667777778999999999998877665432 00 011 1567899999888887 8887887799
Q ss_pred EEeecCccccc
Q 043572 113 FLTDSLLTQPL 123 (997)
Q Consensus 113 ~~~~l~~l~~~ 123 (997)
.+|+.....++
T Consensus 210 ~VW~~~~g~~~ 220 (398)
T KOG0771|consen 210 RVWSVNTGAAL 220 (398)
T ss_pred EEEEeccCchh
Confidence 99998876544
No 181
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.40 E-value=20 Score=37.71 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=54.7
Q ss_pred cceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 29 IRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 29 ~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
.-+..+..+++.++.|.+=|++|.++.+++.........++ ..+.......... .....|.++.+- +.+..+|.++
T Consensus 10 ~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~~~~~--~~~~~i~~~~lt-~~G~PiV~ls 85 (219)
T PF07569_consen 10 VLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSPVSDK--SSSPNITSCSLT-SNGVPIVTLS 85 (219)
T ss_pred ecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccccccC--CCCCcEEEEEEc-CCCCEEEEEe
Confidence 34567778999999999999999999999987653211100 0000000000000 144578888887 4555888899
Q ss_pred CCeEEEeecC
Q 043572 109 DQCLFLTDSL 118 (997)
Q Consensus 109 d~~l~~~~l~ 118 (997)
+|..|.|+.+
T Consensus 86 ng~~y~y~~~ 95 (219)
T PF07569_consen 86 NGDSYSYSPD 95 (219)
T ss_pred CCCEEEeccc
Confidence 9999999753
No 182
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=68.95 E-value=2.8e+02 Score=33.99 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=26.6
Q ss_pred CCcceEEEeecccCcEEEEecCCeEEEeec
Q 043572 88 DSPVESIFVLDDVGKVLLLFCDQCLFLTDS 117 (997)
Q Consensus 88 ~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l 117 (997)
+.+|--|.+..+.+.+.|++-+|.+.+|+.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 568999999988888888899999999998
No 183
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.89 E-value=1.5e+02 Score=33.53 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=39.0
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
.++||-|-..|.+|.|......+. . ..+..+ .+..||-.|..++... + ..-|.+.++.+..+
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~---------~---~e~~a~--~t~~pv~~i~~~~~n~---~-f~~gglLv~~lt~l 309 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGP---------L---MELVAN--VTINPVHKIAPVQPNK---I-FTSGGLLVFALTVL 309 (463)
T ss_pred cceeEEeccCceEEEEEccCCCch---------H---hhhhhh--hccCcceeecccCccc---c-ccccceEEeeehhh
Confidence 447999999999999999765532 1 111111 3667888888887663 1 33355666555443
No 184
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=68.65 E-value=2.3e+02 Score=32.75 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=70.0
Q ss_pred CHHHHHHHHhhhhcc-CchhhhhhcccccccCCCChh--HHHHHhhccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 043572 655 DEDLILQHLGWIADI-NAVLAVKVLTSEKRINQLSPD--KVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLA 731 (997)
Q Consensus 655 ~~~li~~~~~wll~~-~p~~~l~if~~~~~~~~l~~~--~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi 731 (997)
+.++...|+..++.. +++.|.+++.+... ..-++. .+...+...++......+|..... +..++.++-.++.+++
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLM 339 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH
Confidence 456677777777654 56667777754322 223343 233445444556678888888764 4567888888877764
Q ss_pred HHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcch
Q 043572 732 KSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQE 811 (997)
Q Consensus 732 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h 811 (997)
+. .. -...+..+...++.. ++..-+.+.+-++.++|++
T Consensus 340 ~~----------------~~--------------~~~A~~~le~al~~~------------P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 340 KH----------------GE--------------WQEASLAFRAALKQR------------PDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HC----------------CC--------------HHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHcCCH
Confidence 31 00 012333333333221 2222234677888999999
Q ss_pred HHHHHHHH
Q 043572 812 TLVLQILA 819 (997)
Q Consensus 812 ~eAL~il~ 819 (997)
++|.+.+=
T Consensus 378 ~~A~~~~~ 385 (398)
T PRK10747 378 EEAAAMRR 385 (398)
T ss_pred HHHHHHHH
Confidence 99987765
No 185
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.53 E-value=7 Score=28.57 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=16.7
Q ss_pred EeecCCeEEEEcCCceEEEEEe
Q 043572 37 ISDCQVLIYIGTQSGSLILLSL 58 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~ 58 (997)
++..+..||+||.+|.|+.+..
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEET
T ss_pred CEEECCEEEEEcCCCEEEEEeC
Confidence 4567999999999999887653
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=68.50 E-value=13 Score=30.45 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhh-cHHHHHHHHHhcCCCCc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDL-HFEEAVDHFLHSETMQP 444 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~-~f~~A~~~f~~~~~~Dp 444 (997)
.-..++..|+|++|+...+..-.-++. -..++...|..++..+ +|++|+..|.+.=.+||
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 446788999999999999775432211 1235666788888888 89999999976423454
No 187
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=68.42 E-value=2.4e+02 Score=33.52 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=62.1
Q ss_pred cCCcceEEEEe---CCEEEEEECCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE-e-CCeEEEEccCCCcc
Q 043572 223 CMDGVKTMVWL---NDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL-V-DNVGVFVDAHGQPV 297 (997)
Q Consensus 223 ~~~~~~~l~~~---~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~-~-~~~g~fv~~~G~~~ 297 (997)
+|..-+.|++. -+..|+|+..+.+-+||+.|+--.-|.... ..-.++.++....+|.| + ++..-|.|.--+..
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc--ccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 45555666655 366899999999999999886533333322 12234445433344444 2 45566666432211
Q ss_pred ccccccCCC------------CCeEEEeC-cEEEEE--ECCeEEEEecCCCc
Q 043572 298 GGSLVFRKS------------PDAVGELS-MYVVVL--RGGKMELYHKKSGI 334 (997)
Q Consensus 298 r~~i~w~~~------------P~~i~~~~-PYll~~--~~~~ieI~~~~~~~ 334 (997)
-+++..... |+++.|.. +-=+++ ..+.+-||++.+..
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 123333222 56666666 444444 46789999887643
No 188
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=68.27 E-value=20 Score=30.32 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=40.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhcch---hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGE---MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~---~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-+...|+|++|+...++.-.-.. .....+-......|..+...|+|++|+++|.++
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456789999999999977643210 112234556677889899999999999998763
No 189
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=68.25 E-value=2.2e+02 Score=32.34 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=76.2
Q ss_pred ceEEEEEEeCCeEEEEEeEecCCcce--------EEEEe--CCEEEEEE---CCcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 203 KRLVLIELVNGSFVILKEIQCMDGVK--------TMVWL--NDSIIVGT---VNGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 203 kki~i~~~~~~~~~~~kei~~~~~~~--------~l~~~--~~~l~vg~---~~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
..|.+|-... .+..+++.+|+.|. .+.+. |..++|+. .+...++|+.++.+..-+++++ .+.
T Consensus 77 d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~---~~~ 151 (352)
T TIGR02658 77 DYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD---CYH 151 (352)
T ss_pred CEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC---CcE
Confidence 4566665544 67778888877754 44444 45688885 5689999999888777677643 244
Q ss_pred eEEcCCCCeEEEEeCCeEEE--EccCCCcccccccc--C------CCCCeEEEeCcEEEEEECCeEEEEecC
Q 043572 270 LKLLSKEQKVLLLVDNVGVF--VDAHGQPVGGSLVF--R------KSPDAVGELSMYVVVLRGGKMELYHKK 331 (997)
Q Consensus 270 i~~~~~~~e~Ll~~~~~g~f--v~~~G~~~r~~i~w--~------~~P~~i~~~~PYll~~~~~~ieI~~~~ 331 (997)
+.+.++...+.+|-|..... .+.+|+....+... . ..|.......-++++-+++.|.+.++.
T Consensus 152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~ 223 (352)
T TIGR02658 152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLS 223 (352)
T ss_pred EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecC
Confidence 55555555777887765444 34566633222222 2 334222223447777777888888854
No 190
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=68.19 E-value=7.2 Score=30.55 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=27.2
Q ss_pred EcCCCcCccccCcc---CCccEEEcCCCeEEEeccccccC
Q 043572 937 INDESLCDSCHARL---GTKLFAMYPDDTIVCYKCYRRQG 973 (997)
Q Consensus 937 I~~~~~C~vC~k~l---~~~~f~v~p~g~~~H~~C~~~~~ 973 (997)
+...+.|.+|++.| +...+----|+..+|..|.....
T Consensus 8 ~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 8 FSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp SSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 45678999999999 33455556789999999998753
No 191
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=67.62 E-value=3 Score=35.41 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=33.7
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccccC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~~~ 990 (997)
+.=.|++|+.-+.+.+ +-|+|++|-..|.... +..+|| |++......+++
T Consensus 3 ~~f~CpIt~~lM~dPV--i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 3 DEFLCPITGELMRDPV--ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGGB-TTTSSB-SSEE--EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE
T ss_pred cccCCcCcCcHhhCce--eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE
Confidence 4457999998888754 4699999999888765 246799 999887765544
No 192
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=66.71 E-value=11 Score=32.61 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFL 437 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~ 437 (997)
.-++..|+|++|+.+++..... . . -..++-..|..++..++|++|++.|.
T Consensus 33 ~~~~~~~~y~~A~~~~~~~~~~-~---~-~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQKLKLD-P---S-NPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHTTHHHHHHHHHHCHTHH-H---C-HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhCCC-C---C-CHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3455666666666666551110 0 0 01222234555666666666666654
No 193
>PTZ00421 coronin; Provisional
Probab=66.48 E-value=2.8e+02 Score=33.06 Aligned_cols=139 Identities=7% Similarity=0.092 Sum_probs=70.3
Q ss_pred EECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCC-ceEEcC
Q 043572 200 IIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPP-MLKLLS 274 (997)
Q Consensus 200 a~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p-~i~~~~ 274 (997)
.....|.+|.+..+.. ...+. ..+.+.+++|. ++.|+.|.. +...++|+.+|....-+.... +... .+...+
T Consensus 145 s~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~ 221 (493)
T PTZ00421 145 GADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA-SAKSQRCLWAK 221 (493)
T ss_pred eCCCEEEEEECCCCeE--EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC-CCcceEEEEcC
Confidence 3456788888765532 23332 24568999997 445666654 578899998876432222111 1111 122223
Q ss_pred CCCeEEEEe------CCeEEEEccC-CC-ccccccccCCC-CCeEEEeC---cEEEEE--ECCeEEEEecCCCceEEEEe
Q 043572 275 KEQKVLLLV------DNVGVFVDAH-GQ-PVGGSLVFRKS-PDAVGELS---MYVVVL--RGGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 275 ~~~e~Ll~~------~~~g~fv~~~-G~-~~r~~i~w~~~-P~~i~~~~---PYll~~--~~~~ieI~~~~~~~lvQ~i~ 340 (997)
+. ..+++. |....+.|.. +. +. ..+..... ...+.+.. .++++. .++.|.++++.++.++....
T Consensus 222 ~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~-~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 222 RK-DLIITLGCSKSQQRQIMLWDTRKMASPY-STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CC-CeEEEEecCCCCCCeEEEEeCCCCCCce-eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 23 333331 2344445532 11 11 11222222 22222222 234433 36789999999998887765
Q ss_pred cCC
Q 043572 341 FGG 343 (997)
Q Consensus 341 ~~~ 343 (997)
+..
T Consensus 300 ~~s 302 (493)
T PTZ00421 300 YSS 302 (493)
T ss_pred ccC
Confidence 543
No 194
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.42 E-value=1.7e+02 Score=32.55 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=25.3
Q ss_pred CCCcceEEEeecccCcEEEEec--CCeEEEeecCcccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFC--DQCLFLTDSLLTQP 122 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~--d~~l~~~~l~~l~~ 122 (997)
.+.+|.++..=|..- +.| +| |.++++|+.-+-+.
T Consensus 107 ~r~~vt~v~~hp~~~-~v~-~as~d~tikv~D~~tg~~ 142 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEA-LVV-SASEDATIKVFDTETGEL 142 (406)
T ss_pred cccceeeeeeccCce-EEE-EecCCceEEEEEccchhh
Confidence 577999988766555 444 77 88999999876443
No 195
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=66.05 E-value=36 Score=39.19 Aligned_cols=88 Identities=10% Similarity=0.124 Sum_probs=60.4
Q ss_pred eeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..+|+|+.. .|..|.+||.|+.|+.|.++++..-. .+... .+-+||+.+.--++.+ .|++-+
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y----------~r~~k-----~~gs~ithLDwS~Ds~-~~~~~S 510 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY----------SRVGK-----CSGSPITHLDWSSDSQ-FLVSNS 510 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE----------EEeee-----ecCceeEEeeecCCCc-eEEecc
Confidence 567888874 37899999999999999999876421 11211 1337999999888888 777677
Q ss_pred CC-eEEEeecCccccccccccccceEEEEe
Q 043572 109 DQ-CLFLTDSLLTQPLKKLGFLKGISVIAK 137 (997)
Q Consensus 109 d~-~l~~~~l~~l~~~~~~~~~kg~~~f~~ 137 (997)
++ .|..| -|.. ++.++.+|++.+-+.
T Consensus 511 ~d~eiLyW-~~~~--~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 511 GDYEILYW-KPSE--CKQITSVKDVKWATY 537 (626)
T ss_pred CceEEEEE-cccc--Ccccceecceeeeee
Confidence 77 66666 4443 233455677665554
No 196
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=66.01 E-value=2.6e+02 Score=32.42 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=100.7
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-CCe
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC-DQC 111 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~-d~~ 111 (997)
+.+-...+++.+++-.+|+.+..|..-.... ++ ..... +...|..+.+.|..+.++|+=+ ||+
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----------v~-~~l~~----htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----------VQ-AELSG----HTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcE-----------EE-EEecC----CcceeEeeccccCCCeEEEecCCCce
Confidence 3344456778776666666565554433221 11 12111 4568999999999887777444 789
Q ss_pred EEEeecCccc-cccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 112 LFLTDSLLTQ-PLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 112 l~~~~l~~l~-~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
+.+|+.-... ++- .++ ++ +|.-.+.--
T Consensus 178 vrl~DtR~~~~~v~-----------eln--hg---------------------------------------~pVe~vl~l 205 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVV-----------ELN--HG---------------------------------------CPVESVLAL 205 (487)
T ss_pred EEEEEeccCCceeE-----------Eec--CC---------------------------------------CceeeEEEc
Confidence 9999976542 110 011 11 110000000
Q ss_pred cCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--E-EEEEECCcEEEEEecCCcceeeecCCCCCCC
Q 043572 191 CRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND--S-IIVGTVNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 191 ~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~-l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
++...|+-|..+.+.+|-...++-....-.+....|+|+.+.++ . +-.|-.....++|+.+-.+..-+.+++
T Consensus 206 -psgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---- 280 (487)
T KOG0310|consen 206 -PSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---- 280 (487)
T ss_pred -CCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc----
Confidence 01135777888999999888553333222334567889988864 3 444466778888865444444344432
Q ss_pred Cce--EEcCCCCeEEEEeCCeEEEEc
Q 043572 268 PML--KLLSKEQKVLLLVDNVGVFVD 291 (997)
Q Consensus 268 p~i--~~~~~~~e~Ll~~~~~g~fv~ 291 (997)
|++ ...++++-+.++..|-++++-
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceeeEEecCCCceEEEecccceeeee
Confidence 322 222334345555555555554
No 197
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=65.95 E-value=90 Score=37.51 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCc
Q 043572 802 AILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRP 838 (997)
Q Consensus 802 ~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~ 838 (997)
.-+|-|+++|-+||++++ .++|.+.++++|....++
T Consensus 246 ~~IYlKf~~~~~al~~ai-~l~~~~~v~~vf~s~~D~ 281 (878)
T KOG2005|consen 246 LKIYLKFNEYPRALVGAI-RLDDMKEVKEVFTSCTDP 281 (878)
T ss_pred HHHHHHHHHhHHHHHHHH-hcCcHHHHHHHHHhccCH
Confidence 457889999999999999 799999999999987764
No 198
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.42 E-value=1.8e+02 Score=35.83 Aligned_cols=150 Identities=9% Similarity=0.041 Sum_probs=81.5
Q ss_pred CCcceEEEeecccCcEEEEec-CCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCcc
Q 043572 88 DSPVESIFVLDDVGKVLLLFC-DQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTST 165 (997)
Q Consensus 88 ~~~I~qi~vl~~~~~lLv~l~-d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (997)
..-|+.|..-|--++-.++=| |+++++|+++.-+-+. =..++. ||.+|+.|.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~Pd------------------------- 462 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPD------------------------- 462 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccC-------------------------
Confidence 345888888888887777555 8899999987743221 112222 455554432
Q ss_pred cchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC-------CcceEEEEe-C--C
Q 043572 166 GQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM-------DGVKTMVWL-N--D 235 (997)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~-------~~~~~l~~~-~--~ 235 (997)
|...++=..+-...+|.-.+..+..-..|.+. ..|+.+.++ + +
T Consensus 463 ---------------------------Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 463 ---------------------------GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD 515 (712)
T ss_pred ---------------------------CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence 11112212233344555554444443333332 246777777 3 3
Q ss_pred EEEEE-ECCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE-eCCeEEEE
Q 043572 236 SIIVG-TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL-VDNVGVFV 290 (997)
Q Consensus 236 ~l~vg-~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~-~~~~g~fv 290 (997)
.|.|. ..+..-|+|+.+......|.--......+-+.+..++.++|| +++..||+
T Consensus 516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 36666 556899999865544444432222223344455445677766 56667765
No 199
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=65.06 E-value=2.7e+02 Score=32.23 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=35.2
Q ss_pred CcEEEEEE-CCeEEEEecCCCceEEEEecCCCCC----CCceecccccCCCcEEEEEcCCeEEEEeecCHH
Q 043572 314 SMYVVVLR-GGKMELYHKKSGICVQAVTFGGEGG----GQCIATDEECGAGKLLVVATPTKVICYQKVPSE 379 (997)
Q Consensus 314 ~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~~~~----~~~i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~ 379 (997)
...|+++. .+.+.+|++.....+..+.++...- +.+.+. ..|++++..+++++.++....-.
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis----~~Gdi~~~~gpsE~~l~sv~~~~ 338 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS----RNGDIFYWTGPSEIQLFSVWGEG 338 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-----TTS-EEEE-SSSEEEEEEEES--
T ss_pred ceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEEC----CCCCEEEEeCcccEEEEEEEccC
Confidence 44555554 6799999999999888888764211 122222 24688888888888887665543
No 200
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=65.05 E-value=19 Score=41.20 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=57.3
Q ss_pred CccceeeeeEEe--ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEE
Q 043572 27 SPIRSLSISPIS--DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVL 104 (997)
Q Consensus 27 ~~~~~~~I~ci~--~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lL 104 (997)
|..+++-|.+.- -.|+.|++|.+..+|-.+.+...... . ..+.+. +-..-.-+.+-|+.+...
T Consensus 461 cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr-i-------kaelts-------sapaCyALa~spDakvcF 525 (705)
T KOG0639|consen 461 CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-I-------KAELTS-------SAPACYALAISPDAKVCF 525 (705)
T ss_pred ccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc-h-------hhhcCC-------cchhhhhhhcCCccceee
Confidence 555666664332 35778999999999888887643321 0 011111 222344566678888777
Q ss_pred EEecCCeEEEeecCcccccccc-ccccceEEEEe
Q 043572 105 LLFCDQCLFLTDSLLTQPLKKL-GFLKGISVIAK 137 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~ 137 (997)
.|.+||.|.+|+|-.-..+-.. +-+.|++++.+
T Consensus 526 sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 526 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred eeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 7788999999999763322211 22445555554
No 201
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=64.34 E-value=4.8e+02 Score=34.95 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=41.0
Q ss_pred HHHHHHHhhcchHHHHHHHH----------------HhcCCHHHHHHHHhhc-----CCchHHHHHHHHhcCCCCCCchh
Q 043572 800 EKAILYRKLGQETLVLQILA----------------LKLEDSEAAEQYCAEI-----GRPDAYMQLLDMYLDSQDGKEPM 858 (997)
Q Consensus 800 e~~~Ll~klg~h~eAL~il~----------------~~l~D~~~Ae~yC~~~-----~~~~l~~~Ll~~~l~~~~~~~~~ 858 (997)
+.+-.|...|+.++|+.++- .+.++++.|++++.+. .+.+.+..+...|....+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~----- 652 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD----- 652 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-----
Confidence 44556777888888876653 2457788888777653 345677777777776532
Q ss_pred HHHHHHHHH
Q 043572 859 FKAAVRLLH 867 (997)
Q Consensus 859 ~~~~~~lL~ 867 (997)
.+.+...++
T Consensus 653 ~~eA~~~l~ 661 (1157)
T PRK11447 653 LAAARAQLA 661 (1157)
T ss_pred HHHHHHHHH
Confidence 445655554
No 202
>PLN03077 Protein ECB2; Provisional
Probab=64.31 E-value=4.1e+02 Score=34.18 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
..+-++|+..|.+.++.++..+++..-.. ...--|..++.-|.+.|++++|++++.+...
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45678899999998865443333211000 0012478899999999999999999999864
No 203
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=64.18 E-value=7.4 Score=26.66 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=20.9
Q ss_pred cCccccCccCCc-cEEEcCCCeEEEeccc
Q 043572 942 LCDSCHARLGTK-LFAMYPDDTIVCYKCY 969 (997)
Q Consensus 942 ~C~vC~k~l~~~-~f~v~p~g~~~H~~C~ 969 (997)
.|.+|+|.+... ...--+++..+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 599999999875 3333466888998885
No 204
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=64.00 E-value=70 Score=38.98 Aligned_cols=58 Identities=24% Similarity=0.503 Sum_probs=43.6
Q ss_pred CCceEEEEEECceEEEEEEe-----CC--eEEEEEeEec----CCcceEEEEeCC-EEEEEECCcEEEEE
Q 043572 192 RGDNVFAVIIGKRLVLIELV-----NG--SFVILKEIQC----MDGVKTMVWLND-SIIVGTVNGYSLFS 249 (997)
Q Consensus 192 ~~~~~l~Va~kkki~i~~~~-----~~--~~~~~kei~~----~~~~~~l~~~~~-~l~vg~~~~y~lid 249 (997)
++...++|+...+|.+|.=. +. .+..++++.+ |.+|....|.++ .++||+.++++++|
T Consensus 85 d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 85 DGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred CCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 35567999999999998532 11 4666666543 567889999975 59999999999987
No 205
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.45 E-value=1.2e+02 Score=31.96 Aligned_cols=111 Identities=21% Similarity=0.394 Sum_probs=65.0
Q ss_pred EECceEEEEEEeCC-eEEEEEeEecCCcceEEEEeCCE--EEEEECCcEEE--EE--ecCCcc---eeeecCCCCCCCCc
Q 043572 200 IIGKRLVLIELVNG-SFVILKEIQCMDGVKTMVWLNDS--IIVGTVNGYSL--FS--CVTGQS---GVIFTLPDVSCPPM 269 (997)
Q Consensus 200 a~kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~~~~--l~vg~~~~y~l--id--l~~g~~---~~l~~~~~~~~~p~ 269 (997)
....+-.+|.|..+ +...++. .-+.+..++|..+. .++-...+|.+ +| ..+|.. ..+|..... +|.
T Consensus 134 le~~~g~Ly~~~~~h~v~~i~~--~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~~ 209 (310)
T KOG4499|consen 134 LEPIGGELYSWLAGHQVELIWN--CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QPF 209 (310)
T ss_pred ccccccEEEEeccCCCceeeeh--hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC--CCc
Confidence 34445567777654 3334333 12334678888643 55556667877 44 666643 334444321 122
Q ss_pred eEEcCCCCeEEEEeCCeEEEEccCCCccccccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCC
Q 043572 270 LKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGE 344 (997)
Q Consensus 270 i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~ 344 (997)
-..+++ |+-||.+|.. ||-++..++|.-.++.||.++|+|.+|..
T Consensus 210 e~~~PD-----------Gm~ID~eG~L-------------------~Va~~ng~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 210 ESLEPD-----------GMTIDTEGNL-------------------YVATFNGGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred CCCCCC-----------cceEccCCcE-------------------EEEEecCcEEEEECCCCCcEEEEEEcCCC
Confidence 222221 3334555543 77778888999999999999999999864
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=62.43 E-value=21 Score=29.54 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=38.6
Q ss_pred HHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 384 DLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 384 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.++..++|++|+..++..-.-++.+ -..+...|..++..|+|++|+..|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHH
Confidence 5788999999999998864322211 23455688889999999999998876
No 207
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=62.23 E-value=4e+02 Score=33.33 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 544 GVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 544 ~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
.+-++|+.+|.+.+..+....++..-.. ...--|..|+.-|.+.|++++|++++.+....
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----------RNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4456788889988764433332211000 01124888999999999999999999998753
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.25 E-value=3.8 Score=46.10 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=42.4
Q ss_pred EEcCCCcCccccCccCCcc--EEEcCCCeEEEeccccccCcccCCCCCCCCC
Q 043572 936 QINDESLCDSCHARLGTKL--FAMYPDDTIVCYKCYRRQGESTSITGRDFKK 985 (997)
Q Consensus 936 ~I~~~~~C~vC~k~l~~~~--f~v~p~g~~~H~~C~~~~~~~~~~t~~~f~~ 985 (997)
..++--+|+||=.++..++ +.-.+|.|.||-.|+..-....||-|+-|-.
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence 3456679999999998754 6667899999999999988888999988866
No 209
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=61.06 E-value=1.8e+02 Score=33.47 Aligned_cols=86 Identities=14% Similarity=0.008 Sum_probs=61.0
Q ss_pred ccccCCCCCCCc--cceeeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcce
Q 043572 17 QFDLSHYSRSSP--IRSLSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVE 92 (997)
Q Consensus 17 ~~~~~~~~~~~~--~~~~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 92 (997)
|||.-+.++... -...+|.|.+.+.+ +||.|+.|+.+-+|.++..+- ...+.. +...|.
T Consensus 228 Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-------------vetlyG----Hqd~v~ 290 (479)
T KOG0299|consen 228 IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-------------VETLYG----HQDGVL 290 (479)
T ss_pred EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-------------HHHHhC----Ccccee
Confidence 566555555533 23468888887644 799999999999999986431 011111 567899
Q ss_pred EEEeecccCcEEEEecCCeEEEeecCc
Q 043572 93 SIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 93 qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
+|.+|...-.+-|.=-|+++.+|.+|+
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~e 317 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPE 317 (479)
T ss_pred eechhcccceEEeccccceeEEEeccc
Confidence 999998877666633688999999976
No 210
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=60.91 E-value=11 Score=26.82 Aligned_cols=23 Identities=26% Similarity=0.441 Sum_probs=20.0
Q ss_pred hhHHHHHHhhcCChHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRV 609 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~ 609 (997)
+..|+.+|...|+|++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45789999999999999999998
No 211
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=60.63 E-value=41 Score=31.03 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=40.4
Q ss_pred CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeec
Q 043572 42 VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDS 117 (997)
Q Consensus 42 ~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l 117 (997)
+.|++||+|..|..|.-++--. +.+ ...+|..+..+.. +++.-+|.+|+|-+|+-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~------------Ei~--------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVA------------EIT--------ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEE------------EEe--------cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 4699999999999887664321 001 2346888888887 44777799999999975
No 212
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.03 E-value=23 Score=45.55 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=52.6
Q ss_pred cceeeeeEEee-cCCeEEEEcCCceEE--EEEeCCCCCCCCC-CCCCCCCccccccccccc----cCCCcceEEEeeccc
Q 043572 29 IRSLSISPISD-CQVLIYIGTQSGSLI--LLSLDPTAATTLH-VPNTTPSQQHVSFLKTVS----VADSPVESIFVLDDV 100 (997)
Q Consensus 29 ~~~~~I~ci~~-~~~~l~iGT~~G~ll--~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~I~qi~vl~~~ 100 (997)
..+..++||.. -+.++|+|+.+|.|+ +|.-.++=....+ .-+.+.+ ....+++++. .++.||.||.+-...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s-~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKS-VLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchh-HHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 44578899993 455899999999876 3433332111000 0000000 0011111111 246799999999999
Q ss_pred CcEEEEecC-CeEEEeecCc
Q 043572 101 GKVLLLFCD-QCLFLTDSLL 119 (997)
Q Consensus 101 ~~lLv~l~d-~~l~~~~l~~ 119 (997)
+.+.+ |+. |++.+|++-.
T Consensus 255 ~IlY~-lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYV-LSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeee-eccCceEEEEEccC
Confidence 97777 875 5999999754
No 213
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.85 E-value=2 Score=51.75 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCCcCccccCccCCc---cEEEcCCCeEEEecccccc--CcccCCCCCC
Q 043572 939 DESLCDSCHARLGTK---LFAMYPDDTIVCYKCYRRQ--GESTSITGRD 982 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~---~f~v~p~g~~~H~~C~~~~--~~~~~~t~~~ 982 (997)
....|.+|...+... .--+-||||++|-.|+++- ....||+|+-
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 467999999999752 2457899999999999974 3567998887
No 214
>PLN03218 maturation of RBCL 1; Provisional
Probab=58.90 E-value=5.5e+02 Score=33.89 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhh-HHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMA-KEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~-~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
+..-+..|+..|++++|+++++.....+..+ ... ++...--.+...+.+++|+.+|..
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v---~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI---YHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445688999999999999998877554322 111 111111123456789999988764
No 215
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=58.72 E-value=1.9e+02 Score=32.76 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+...+......... ...+...+..+...++|++|++.|.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFA----EGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcch----HHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 456777888888888877654321111 12333455566777888888877765
No 216
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=58.66 E-value=2.6e+02 Score=31.69 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=22.2
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
+..|+.+|...|++++|++++.+...
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45688899999999999999998764
No 217
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=58.26 E-value=6.8 Score=31.97 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccccCcccCCCC
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITG 980 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~t~ 980 (997)
.-+|+.|..-+. .++...-|.|+|...|.+..-...||.+
T Consensus 7 lLrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~~~CPvC 46 (65)
T PF14835_consen 7 LLRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIGSECPVC 46 (65)
T ss_dssp TTS-SSS-S--S-S-B---SSS--B-TTTGGGGTTTB-SSS
T ss_pred hcCCcHHHHHhc-CCceeccCccHHHHHHhHHhcCCCCCCc
Confidence 357999987765 4677899999999999998755668843
No 218
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.21 E-value=1.7 Score=49.14 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=32.8
Q ss_pred EcCCCcCccccCccCC----c-----------cEEEcCCCeEEEeccccccC---cccCCCCC
Q 043572 937 INDESLCDSCHARLGT----K-----------LFAMYPDDTIVCYKCYRRQG---ESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~----~-----------~f~v~p~g~~~H~~C~~~~~---~~~~~t~~ 981 (997)
+.....|++|=.+|.- + ...+.||.|++|..|+..-. ...||+|+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR 630 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCR 630 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccC
Confidence 4456789999988852 1 14456999999999998753 34699765
No 219
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=57.83 E-value=91 Score=35.50 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=52.1
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF- 107 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l- 107 (997)
.+|+-++.. .+..++||++|.|++|....... ++-.++ .+..+|.-|.+-...--+|++-
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-------------~vwt~~---AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-------------PVWTLK---AHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCC-------------ceeEEE---eccCCcceEEecCCCCcceeecc
Confidence 466666643 44799999999999888875432 111111 3667999999988877677732
Q ss_pred cCCeEEEeecCcccc
Q 043572 108 CDQCLFLTDSLLTQP 122 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~ 122 (997)
+|++|.+|.++--.|
T Consensus 394 ~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDSP 408 (463)
T ss_pred ccceEEEEeecCCCC
Confidence 257999999877655
No 220
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=57.66 E-value=29 Score=29.86 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=34.1
Q ss_pred hcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 387 RKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 387 ~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
++|+|+.|+.+++..-...+.+.+ ..+.-..|..+|..++|++|+..+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~--~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPN--SAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHH--HHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCCChh--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 468999999999887543321111 11222368889999999999998865
No 221
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.09 E-value=35 Score=35.54 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=54.3
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
.|.+|+..+.-+.-|+-||.+..|.+....- .... --.||+.+..-++.+..|+.--|++|
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G~l-------------~sDy------~g~pit~vs~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL-------------SSDY------FGHPITSVSFSKDGNCSLASSLDSTL 207 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEeeccee-------------ehhh------cCCcceeEEecCCCCEEEEeecccee
Confidence 6888999899999999999999999976531 0111 23599999999999999997779999
Q ss_pred EEeecCc
Q 043572 113 FLTDSLL 119 (997)
Q Consensus 113 ~~~~l~~ 119 (997)
++.+-.+
T Consensus 208 rLlDk~t 214 (307)
T KOG0316|consen 208 RLLDKET 214 (307)
T ss_pred eecccch
Confidence 9976443
No 222
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.91 E-value=2.8 Score=49.83 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=30.3
Q ss_pred cCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITG 980 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~ 980 (997)
.|+.|+-.+..+.++.--|||+.|..|+..- ...+||+|
T Consensus 1030 ~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~CpsG 1070 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPSG 1070 (1081)
T ss_pred eeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCCC
Confidence 4777887776667777889999999999863 23479965
No 223
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=56.61 E-value=1.5e+02 Score=34.98 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=45.3
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccc-cccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecC
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQH-VSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSL 118 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~ 118 (997)
...|+.++++|.|-++++.......++ .+.+ ..|-. .+-||-+..+-+..+...-.-.||+|+.|++|
T Consensus 306 ep~lit~sed~~lk~WnLqk~~~s~~~------~~epi~tfra----H~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 306 EPVLITASEDGTLKLWNLQKAKKSAEK------DVEPILTFRA----HEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred CCeEEEeccccchhhhhhcccCCcccc------ceeeeEEEec----ccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 447999999999888888432221111 1111 12221 57799998888888866665568999999987
No 224
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=56.28 E-value=10 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHhcCCCCc
Q 043572 415 VHAQIGFLLLFDLHFEEAVDHFLHSETMQP 444 (997)
Q Consensus 415 i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp 444 (997)
+....|..++..++|++|.++|.++=.++|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455688999999999999999987422444
No 225
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=56.07 E-value=2.7e+02 Score=29.44 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=59.1
Q ss_pred EEEEEe--CCeEEEEEeEecCCcceEEEEeC--CEEEEE-ECCcEEEEEecCCcceeee-cCCCCC-CCCc----eEEcC
Q 043572 206 VLIELV--NGSFVILKEIQCMDGVKTMVWLN--DSIIVG-TVNGYSLFSCVTGQSGVIF-TLPDVS-CPPM----LKLLS 274 (997)
Q Consensus 206 ~i~~~~--~~~~~~~kei~~~~~~~~l~~~~--~~l~vg-~~~~y~lidl~~g~~~~l~-~~~~~~-~~p~----i~~~~ 274 (997)
.+|.|+ .++|++.-.- -.|-+.++.-++ .-|.-| -.....+.|+.|+.....+ ++..++ .+|- |..+.
T Consensus 137 ~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 137 VIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred EEEEEEecCCEEEEEEcC-CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe
Confidence 455554 4566643211 124456665543 235555 4457889999988765554 333322 3442 44455
Q ss_pred CCCeEEEEeC--CeEEEEccCCCccccccccCCCCCeEEEeCcEEEEEE
Q 043572 275 KEQKVLLLVD--NVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLR 321 (997)
Q Consensus 275 ~~~e~Ll~~~--~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~PYll~~~ 321 (997)
.++.-|+|-+ +..++==..-.++. .+..+..-..+.+..--|++..
T Consensus 216 ~~edWlvCGgGp~lslwhLrsse~t~-vfpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 216 VNEDWLVCGGGPKLSLWHLRSSESTC-VFPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ccCceEEecCCCceeEEeccCCCceE-EEecccceeEeeeecceEEEec
Confidence 5567888865 34554332222321 3444455555555555566555
No 226
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=55.56 E-value=3.6e+02 Score=32.99 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=43.9
Q ss_pred HHHHHHhccCchhhhcccCC-----CCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHH
Q 043572 549 LMYLYRALNRVHDMENLAPS-----ENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRV 609 (997)
Q Consensus 549 Ll~~y~~~~~~~~l~~ll~~-----~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~ 609 (997)
-+.+|++.+....-.+..-. .+.-.++.+..-|.+...|+-...+|++..++++||+++++
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkk 686 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKK 686 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHc
Confidence 56789988754332222110 12334566667788889999999999999999999999986
No 227
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=55.43 E-value=4.2 Score=27.82 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=10.7
Q ss_pred cCccccCccCC-ccEEEcCCCeEEEeccc
Q 043572 942 LCDSCHARLGT-KLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 942 ~C~vC~k~l~~-~~f~v~p~g~~~H~~C~ 969 (997)
.|.+|++++.. ..+.--.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 69999999987 33434468889998884
No 228
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=55.33 E-value=2.4e+02 Score=32.09 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=54.4
Q ss_pred eeeEEeecC--CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDCQ--VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~~--~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
++..++.-. ..|+-|..|-.+..|++...... ++++..=+..+|+.|..-++....|..-.|+
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSIDFDSDNKHVIAASNDK 241 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence 455555422 46899999999999988765421 1111001456899999999988888867789
Q ss_pred eEEEeecCccccccc
Q 043572 111 CLFLTDSLLTQPLKK 125 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~ 125 (997)
.+++|+...+...++
T Consensus 242 ~~r~Wnvd~~r~~~T 256 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHT 256 (459)
T ss_pred ceeeeeccchhhhhh
Confidence 999999998765543
No 229
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.89 E-value=23 Score=34.30 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...++..|++++|....+...... .+.......+.+.|..++.+++|++|+..+..
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 367888888888888887765432 11122223444567778888888888888754
No 230
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=54.60 E-value=3.8 Score=34.57 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=23.2
Q ss_pred cEEEcCCCeEEEecccccc--CcccCC-CCCCC
Q 043572 954 LFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDF 983 (997)
Q Consensus 954 ~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f 983 (997)
++++--|.|.||.+|..+- ..++|| -.+.|
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 4677789999999999874 367899 55554
No 231
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.20 E-value=26 Score=32.70 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccCcEEEcCCCcCccccCccCCccEEEcCCCeEEEe
Q 043572 920 DIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCY 966 (997)
Q Consensus 920 ~l~~~~~~~~~~~~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~ 966 (997)
.+..++...+.+++.+-+..+..|.+|+|.=.. -.+||..||
T Consensus 45 el~~Qi~erkEqqKKaGv~ddatC~IC~KTKFA-----DG~GH~C~Y 86 (169)
T KOG3799|consen 45 ELSQQIQERKEQQKKAGVGDDATCGICHKTKFA-----DGCGHNCSY 86 (169)
T ss_pred HHHHHHHHHHHHhhccccCcCcchhhhhhcccc-----cccCcccch
Confidence 344444433445666778899999999986432 456787776
No 232
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=53.90 E-value=5.8e+02 Score=32.59 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=77.6
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
.-.+|+++....|++|+.+|.++.|..+....-. ... |.+.++.+|+.==..-......++|++|+=
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l----------sd~---Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP 652 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL----------SDR---KKVTLGTQPISLRTFSSKSRTAVFALSDRP 652 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceE----------ccc---cccccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence 3457778777889999999999988887554210 001 111245555554343333444555588874
Q ss_pred EEEeecCc---cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 112 LFLTDSLL---TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 112 l~~~~l~~---l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
-.+|.-.- +.|+ ..|-+...| ..+|
T Consensus 653 ~viY~~n~kLv~spl----s~kev~~~c-----------------~f~s------------------------------- 680 (1096)
T KOG1897|consen 653 TVIYSSNGKLVYSPL----SLKEVNHMC-----------------PFNS------------------------------- 680 (1096)
T ss_pred EEEEecCCcEEEecc----chHHhhhhc-----------------cccc-------------------------------
Confidence 44444321 1221 112222122 1000
Q ss_pred cccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEE
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVG 240 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg 240 (997)
......++.+.+..+.+..++.=.=...+.+++.+.|+.+++...+++++
T Consensus 681 --~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~ 730 (1096)
T KOG1897|consen 681 --DAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFG 730 (1096)
T ss_pred --ccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEE
Confidence 01223577788888888887652111224477778888888877666666
No 233
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.03 E-value=40 Score=32.60 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=37.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
++...+..+....+-..++.+..+.... .+-.......|..++.+|+|++|...|..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s-~ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSS-PYAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556667888888877776654432211 12223344466778889999999988865
No 234
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.40 E-value=7.7 Score=40.92 Aligned_cols=33 Identities=30% Similarity=0.724 Sum_probs=27.8
Q ss_pred CCcCccccCccCCccEEEcCC--CeEEEecccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPD--DTIVCYKCYRRQ 972 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~--g~~~H~~C~~~~ 972 (997)
--.|..|+.+|.+.-||-.|. .|-|.+-|.+..
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSRes 302 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRES 302 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHH
Confidence 368999999999999999984 788888887754
No 235
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.07 E-value=4.2e+02 Score=30.39 Aligned_cols=129 Identities=15% Similarity=0.093 Sum_probs=68.8
Q ss_pred EeCCEEEEEE-CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEE-EeCCeEEEEcc-CCCccccccccCCCC-
Q 043572 232 WLNDSIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLL-LVDNVGVFVDA-HGQPVGGSLVFRKSP- 307 (997)
Q Consensus 232 ~~~~~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~~~~g~fv~~-~G~~~r~~i~w~~~P- 307 (997)
..++.++++. .....-+|+.+|+..--.+.+.. ..|. .. ++.+.+ ..++..+-+|. +| .+.|....
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~---~~-~~~vy~~~~~g~l~ald~~tG-----~~~W~~~~~ 323 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA---VD-GGRIYLVDQNDRVYALDTRGG-----VELWSQSDL 323 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE---EE-CCEEEEEcCCCeEEEEECCCC-----cEEEccccc
Confidence 4577777765 45788899998875443333321 1111 12 223333 33444555554 33 34553221
Q ss_pred -----CeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecCCC-CCCCceecccccCCCcEEEEEcCCeEEEEee
Q 043572 308 -----DAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFGGE-GGGQCIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 308 -----~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~~-~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
.+.++..-+|++.. ++.|.+.+..+|+.+-...+... ..+...+. .+.+++...++.|+++.+
T Consensus 324 ~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-----~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 324 LHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA-----DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE-----CCEEEEEeCCceEEEEeC
Confidence 12234456777665 46788888999998877666432 11122222 234444445668888764
No 236
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.04 E-value=7.3 Score=40.63 Aligned_cols=42 Identities=12% Similarity=0.304 Sum_probs=35.5
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccccCcccCCCCCCC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRDF 983 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~t~~~f 983 (997)
.|..|++.=....|...-|+||+...|.+--...+||+|+--
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ 46 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKS 46 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCccccccccce
Confidence 599999887777899999999999999998766689976543
No 237
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=52.01 E-value=26 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCceEEEEEeCC
Q 043572 40 CQVLIYIGTQSGSLILLSLDP 60 (997)
Q Consensus 40 ~~~~l~iGT~~G~ll~y~~~~ 60 (997)
+++.+|+|+.+|.|+.+....
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKT 25 (33)
T ss_pred ECCEEEEEcCCCEEEEEEccc
Confidence 567899999999998877643
No 238
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=51.61 E-value=54 Score=27.19 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.+...++..|++++|+..++......+.. ..+....|..+...+++++|+++|.+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999987754322111 145566788888889999999998763
No 239
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=50.94 E-value=1.6e+02 Score=37.34 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=55.5
Q ss_pred Cccce--eeeeEEe--ecCCeEEEEcCCceEEEEEeCCCCCCCCC-CCCCCCCccc---cccccccccCCCcceEEEeec
Q 043572 27 SPIRS--LSISPIS--DCQVLIYIGTQSGSLILLSLDPTAATTLH-VPNTTPSQQH---VSFLKTVSVADSPVESIFVLD 98 (997)
Q Consensus 27 ~~~~~--~~I~ci~--~~~~~l~iGT~~G~ll~y~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~I~qi~vl~ 98 (997)
|++.+ ..|+|+- ..|..|+.|++|+.+..+.-.+...+..+ ..+....+.. ...++. +..-|.-+.--|
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~---H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG---HDSDVLDVNWSP 139 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec---CCCccceeccCC
Confidence 44443 6899984 35779999999999887766642211100 0000011111 122221 455688888778
Q ss_pred ccCcEEEEec-CCeEEEeecCccccc
Q 043572 99 DVGKVLLLFC-DQCLFLTDSLLTQPL 123 (997)
Q Consensus 99 ~~~~lLv~l~-d~~l~~~~l~~l~~~ 123 (997)
... +||+.+ |+++.+|+...|+-+
T Consensus 140 ~~~-~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 140 DDS-LLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred Ccc-EEEEecccceEEEEccccceee
Confidence 444 887444 789999999998543
No 240
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=50.93 E-value=3.8e+02 Score=30.52 Aligned_cols=70 Identities=14% Similarity=0.016 Sum_probs=44.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
..|+.++.. +..++-.|.||.+..++++.... ...+. .+..+|.-....-...+ .|..+
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--------------~~TLs---GHtdkVt~ak~~~~~~~-vVsgs~ 281 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--------------RHTLS---GHTDKVTAAKFKLSHSR-VVSGSA 281 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccchhh--------------hhhhc---ccccceeeehhhccccc-eeeccc
Confidence 357777743 44677789999998888875321 11111 24456777776666665 33344
Q ss_pred CCeEEEeecCc
Q 043572 109 DQCLFLTDSLL 119 (997)
Q Consensus 109 d~~l~~~~l~~ 119 (997)
|.++..|+|..
T Consensus 282 DRtiK~WDl~k 292 (459)
T KOG0288|consen 282 DRTIKLWDLQK 292 (459)
T ss_pred cchhhhhhhhh
Confidence 56999999865
No 241
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=50.53 E-value=3.4e+02 Score=30.66 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEee-------------
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVL------------- 97 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl------------- 97 (997)
+.++|+-.- ++.+|-|+.|+++-+|...+.. .-+.++. .-.-|+.|.+-
T Consensus 248 ~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~--------------~~r~lkG---HahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 248 ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK--------------LCRELKG---HAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred cceEEEEEcCCceEEecCCCceEEEEEccchh--------------HHHhhcc---cchheeeeeccchhhhhccccccc
Q ss_pred ----------------------cccCcEEEEecCC-eEEEeecCccc-cccccccccc-eEEEEeecccCCccccccccc
Q 043572 98 ----------------------DDVGKVLLLFCDQ-CLFLTDSLLTQ-PLKKLGFLKG-ISVIAKRIRTSDSESTNLLEN 152 (997)
Q Consensus 98 ----------------------~~~~~lLv~l~d~-~l~~~~l~~l~-~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~ 152 (997)
++..--||+-||+ +|++|+-.... |+..++.-.. |+.+...|
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP------------- 377 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP------------- 377 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-------------
Q ss_pred cccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEE
Q 043572 153 NSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVW 232 (997)
Q Consensus 153 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~ 232 (997)
++.+..-....|.|.++.-..++|...-.-.+ ..|-.++|
T Consensus 378 ---------------------------------------d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv-~~VYqvaw 417 (480)
T KOG0271|consen 378 ---------------------------------------DGRYIASASFDKSVKLWDGRTGKFLASFRGHV-AAVYQVAW 417 (480)
T ss_pred ---------------------------------------CccEEEEeecccceeeeeCCCcchhhhhhhcc-ceeEEEEe
Q ss_pred eCCE-EEEEECC--cEEEEEecCCcceeeec
Q 043572 233 LNDS-IIVGTVN--GYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 233 ~~~~-l~vg~~~--~y~lidl~~g~~~~l~~ 260 (997)
..++ |.|...+ ...+.|+.+.....=+|
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCC
No 242
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=50.09 E-value=38 Score=28.06 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELEC 403 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~ 403 (997)
+.+|.++|+..|+|++|-.+|-+++.
T Consensus 9 ~~~~F~~l~~~g~y~eAA~~AA~sP~ 34 (66)
T PF13838_consen 9 YVQQFNELFSQGQYEEAAKVAANSPR 34 (66)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHSGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 34678999999999999999988764
No 243
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=49.52 E-value=3.6e+02 Score=28.91 Aligned_cols=142 Identities=9% Similarity=0.055 Sum_probs=81.5
Q ss_pred eEEEEEECceEEEEEEeC-CeEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEEecCCcceee-----ecCC----
Q 043572 195 NVFAVIIGKRLVLIELVN-GSFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFSCVTGQSGVI-----FTLP---- 262 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~-~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lidl~~g~~~~l-----~~~~---- 262 (997)
.+++|++...+.+|.++. .......+ ...|..|.... +.+.+-..+...++|+.+-..... .+-+
T Consensus 8 ~~L~vGt~~Gl~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 8 DRLLVGTEDGLYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CEEEEEECCCEEEEEecCCccceeEee---cceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccccc
Confidence 468999999999999932 22333222 22377777776 444444557777788764332221 1100
Q ss_pred --CCCCCC--ceE--EcCCCCeEEEE-eCCeEEEEccCC---Cc--cccccccCCCCCeEEEeCcEEEEEECCeEEEEec
Q 043572 263 --DVSCPP--MLK--LLSKEQKVLLL-VDNVGVFVDAHG---QP--VGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHK 330 (997)
Q Consensus 263 --~~~~~p--~i~--~~~~~~e~Ll~-~~~~g~fv~~~G---~~--~r~~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~ 330 (997)
-...+. ... ....+..+|++ .....+++...+ .. ....+..++.|..+.+....|++-..+..++.++
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl 164 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDL 164 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEec
Confidence 001111 111 11223344444 343444343332 22 1136888899999999999999999999999999
Q ss_pred CCCceEEEE
Q 043572 331 KSGICVQAV 339 (997)
Q Consensus 331 ~~~~lvQ~i 339 (997)
.++......
T Consensus 165 ~~~~~~~l~ 173 (275)
T PF00780_consen 165 NTGSPSELL 173 (275)
T ss_pred CCCCceEEe
Confidence 987654433
No 244
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=49.09 E-value=5.9e+02 Score=31.25 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=56.0
Q ss_pred ceEEEEeCCE---EEEEECCcEEEEEecCCcceeeecCCCCCCCCce-EEcCCCCeEEEE--eCCeEEEEcc-CCCcccc
Q 043572 227 VKTMVWLNDS---IIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPML-KLLSKEQKVLLL--VDNVGVFVDA-HGQPVGG 299 (997)
Q Consensus 227 ~~~l~~~~~~---l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i-~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~ 299 (997)
.-.|....+. +.++-.++..++|+++|.-..+|.-+...-.-.| +.+++.+.++.| +|...-|+|. .|+....
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 3556555432 4555678999999999988888876532212233 333444567765 4555555664 5665532
Q ss_pred ccccCCCCCeEEEe--CcEEEEEE-CCeEEEEec
Q 043572 300 SLVFRKSPDAVGEL--SMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 300 ~i~w~~~P~~i~~~--~PYll~~~-~~~ieI~~~ 330 (997)
..--++..+.+.+. --+|+.+. ++.|-|-.+
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 22222233333332 22455443 455555544
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=48.92 E-value=3.1e+02 Score=28.01 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=23.7
Q ss_pred CcceEEEeecccCcEEEEecC---CeEEEeecC
Q 043572 89 SPVESIFVLDDVGKVLLLFCD---QCLFLTDSL 118 (997)
Q Consensus 89 ~~I~qi~vl~~~~~lLv~l~d---~~l~~~~l~ 118 (997)
.+|..+.--|..++++| +.+ +.+.+|++.
T Consensus 60 ~~I~~~~WsP~g~~fav-i~g~~~~~v~lyd~~ 91 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAV-IYGSMPAKVTLYDVK 91 (194)
T ss_pred CceEEEEECcCCCEEEE-EEccCCcccEEEcCc
Confidence 37999999999998888 643 489999884
No 246
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=48.38 E-value=4e+02 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=26.9
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ 121 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~ 121 (997)
.++.|+.+..-.+...+.-+-.|+++++|++..|+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~ 119 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE 119 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhh
Confidence 57789999887777755553346799999998875
No 247
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=48.17 E-value=25 Score=23.36 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.4
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
|..++..|.+.|++++|++++.++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 67789999999999999999998775
No 248
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=2.6e+02 Score=31.77 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=66.2
Q ss_pred EEEEECceEEEEEEeCC--eEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEEecCCcceeeecCCCCCCCCceEE
Q 043572 197 FAVIIGKRLVLIELVNG--SFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKL 272 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~--~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~ 272 (997)
+.|+.---+..|++... .+..+-|.-.|+...+|...+ +.+.+.++.. |-||... -+...
T Consensus 301 lLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~------------pn~p~~r----~il~~ 364 (463)
T KOG1645|consen 301 LLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSN------------PNFPQSR----FILGR 364 (463)
T ss_pred eEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCC------------CCCccce----eeeee
Confidence 45555555566666543 344445555566677888776 5566655543 2222211 11222
Q ss_pred cCCCCeEEEEeCCeEEEEccCCCccccccccCCCCCeEE-EeCcEEEEEEC--CeEEEEecCCCceEEEEecCCC
Q 043572 273 LSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVG-ELSMYVVVLRG--GKMELYHKKSGICVQAVTFGGE 344 (997)
Q Consensus 273 ~~~~~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~~i~-~~~PYll~~~~--~~ieI~~~~~~~lvQ~i~~~~~ 344 (997)
+....-|-+|.-.-++| |.+..+ ..+.+..++ -.-.||+++.+ +.+-+.++.+++++|+++++.+
T Consensus 365 ~d~~dG~pVc~~r~~~~----Gs~~~k---l~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~ep 432 (463)
T KOG1645|consen 365 IDFRDGFPVCGKRRTYF----GSKQTK---LSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEP 432 (463)
T ss_pred eccccCceeeeeccccc----CCcccc---cccccceeccccccEEEEecCCcceeEEeccchhheeeecccCcc
Confidence 22223455555444555 433221 111111111 11267777764 6778888899999999999864
No 249
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.83 E-value=1.1 Score=56.08 Aligned_cols=128 Identities=12% Similarity=0.009 Sum_probs=86.2
Q ss_pred EEEEECceEEEEEEeCC--eEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCCC----------
Q 043572 197 FAVIIGKRLVLIELVNG--SFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDV---------- 264 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~--~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~---------- 264 (997)
++++.++-+.+|+++.+ .....+|| |..++.+....+. +|...+|..+++..+ .+...+..
T Consensus 1149 ~il~i~k~~~v~~vt~~d~~~~~~~ei--p~~fq~l~~~~~~--~~~~~~f~~l~l~~~---~~v~~~~~~~~~l~~~~~ 1221 (1317)
T KOG0612|consen 1149 LILDIKKLFHVRQVTQTDVRRADAKEI--PRIFQILYANEGE--SGHPSEFSYLSLGPN---SLVHKGHEFIPFLYHFPT 1221 (1317)
T ss_pred hhhhhhhceeEEeecccccccchhhhc--chhHHHHHhhccc--ccCccccchhhccch---hhcCCCCcchHHHhhcch
Confidence 67788888899999876 33455666 7777776655555 888899998888621 11111110
Q ss_pred CCCCceEEcC-CCCeEEEEeCCeEEEEccCCCccccccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCC
Q 043572 265 SCPPMLKLLS-KEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 265 ~~~p~i~~~~-~~~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
.+.-++.++. .-+++++++..++.++|..|+ +.|+.- .+++..++++++.+...+ ...|||+|..+.
T Consensus 1222 ~~~~~~k~l~~~~~~ye~~~~~~~~~~d~~~k-----~m~p~k--y~~~~a~~l~l~a~~~~d-----q~eWV~~l~k~~ 1289 (1317)
T KOG0612|consen 1222 NCEACIKPLWHMFKAYECRRCHIKCHKDHMDK-----IMAPCK--YDTSSARHLLLLAESTED-----QAKWVQRLVKKI 1289 (1317)
T ss_pred hHHHHhhhcccchhHHHHHHhhcccccccccc-----ccCccc--ccccCCccceeccCCchH-----HHHHHHHHhccc
Confidence 0111222222 113888999999999999888 556544 778889999999887666 678999986654
No 250
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=47.50 E-value=1.3e+02 Score=34.73 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=88.3
Q ss_pred ceEEEEEECceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC---EEEEEECCcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 194 DNVFAVIIGKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND---SIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 194 ~~~l~Va~kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~---~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
...+.-.+.-+|.||+.-++ -..++.+.. ..+|+.+.|... .+..++.....+.|++||+...-|..+. .|.
T Consensus 228 hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~---~~~ 303 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK---VPT 303 (503)
T ss_pred eEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC---Cce
Confidence 35566667778888876542 233444433 346788888852 3899999999999999999988888753 454
Q ss_pred eEEc-CCC-CeEEEE-eCCeEEEEcc-CCCcccc---ccccCCCCCeEEEe---CcEEEEEECCeEEEEecCCCceEEEE
Q 043572 270 LKLL-SKE-QKVLLL-VDNVGVFVDA-HGQPVGG---SLVFRKSPDAVGEL---SMYVVVLRGGKMELYHKKSGICVQAV 339 (997)
Q Consensus 270 i~~~-~~~-~e~Ll~-~~~~g~fv~~-~G~~~r~---~i~w~~~P~~i~~~---~PYll~~~~~~ieI~~~~~~~lvQ~i 339 (997)
++.+ +++ ++||++ .|.-.+-.|. .|+.++. .+. .-..+.+. .-||.+...+.+-|-.......+|.|
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg---~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG---AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh---heeeeEEccCCceEeeeccCccEEEEEcCCCccchhh
Confidence 5444 444 578887 4444444443 5665542 110 11122221 22555556677888887777777766
Q ss_pred ecCC
Q 043572 340 TFGG 343 (997)
Q Consensus 340 ~~~~ 343 (997)
.-+.
T Consensus 381 ~~~~ 384 (503)
T KOG0282|consen 381 ADPE 384 (503)
T ss_pred cchh
Confidence 5544
No 251
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.99 E-value=88 Score=35.88 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=67.4
Q ss_pred CCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCccc
Q 043572 88 DSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTG 166 (997)
Q Consensus 88 ~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (997)
..+++-|..=|-...+-+.-++|+|.+|+=..-+|+-++-.-+| |+.+|+++
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~--------------------------- 303 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR--------------------------- 303 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC---------------------------
Confidence 34566666666555444445688999998777777655443343 66666543
Q ss_pred chhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEECCcE
Q 043572 167 QRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGTVNGY 245 (997)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~~~~y 245 (997)
+|.+-...+..+++.||.+.. |..+..+..|.++..+++.. +.|.+|.....
T Consensus 304 -------------------------~G~YMaTtG~Dr~~kIWDlR~--~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v 356 (545)
T KOG1272|consen 304 -------------------------GGRYMATTGLDRKVKIWDLRN--FYQLHTYRTPHPASNLSLSQKGLLALSYGDHV 356 (545)
T ss_pred -------------------------CCcEEeecccccceeEeeecc--ccccceeecCCCccccccccccceeeecCCee
Confidence 233444445677888877764 66666666677777777775 34666666555
Q ss_pred EEE
Q 043572 246 SLF 248 (997)
Q Consensus 246 ~li 248 (997)
.++
T Consensus 357 ~iw 359 (545)
T KOG1272|consen 357 QIW 359 (545)
T ss_pred eee
Confidence 554
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=46.69 E-value=48 Score=36.49 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=54.0
Q ss_pred ceeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCcc----ccccccccccCCCcceEEEeecccCcE
Q 043572 30 RSLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQ----HVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 30 ~~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
+.--|+||+. +|+.|+.|...|.+-.|.-+.....+ ++-...-| .-..++.+.+ .-+|.+|.-+++.+..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~e---y~~~t~fqshepEFDYLkSlei-eEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGE---YNFQTEFQSHEPEFDYLKSLEI-EEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccc---eeeeeeeeccCcccchhhhhhh-hhhhhhceecCCCCcc
Confidence 3446788875 69999999999998887665444211 10000000 0123333222 2369999999998876
Q ss_pred EEEec--CCeEEEeecCc
Q 043572 104 LLLFC--DQCLFLTDSLL 119 (997)
Q Consensus 104 Lv~l~--d~~l~~~~l~~ 119 (997)
..+|+ |+++.+|-+.+
T Consensus 100 ~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred EEEEecCCcceeeeeeec
Confidence 66454 67999998765
No 253
>PLN03077 Protein ECB2; Provisional
Probab=46.63 E-value=7.5e+02 Score=31.78 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
..+-++|+..|.+.++.++...++..=. . ...--|..++.-|.+.|++++|++++.++...
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~--------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRME--T--------KDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCC--C--------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4566788899998876443333221100 0 01124889999999999999999999987654
No 254
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=46.58 E-value=2.2e+02 Score=31.62 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=45.5
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEEecCCeEEEeecC
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLLFCDQCLFLTDSL 118 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~l~d~~l~~~~l~ 118 (997)
++.+.+|.++|.+..|........ ..|. -...-+.++.++.. -+-++.+-+||+|++|++-
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l-------------~~fk----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLL-------------EEFK----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhh-------------heec----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 456999999999999988764321 1111 13445777888763 3446676789999999997
Q ss_pred ccccc
Q 043572 119 LTQPL 123 (997)
Q Consensus 119 ~l~~~ 123 (997)
...-.
T Consensus 103 s~~e~ 107 (376)
T KOG1188|consen 103 SQAES 107 (376)
T ss_pred cchhh
Confidence 76543
No 255
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=46.04 E-value=3.3e+02 Score=30.06 Aligned_cols=74 Identities=9% Similarity=-0.021 Sum_probs=55.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|.+.. +..+.+|+++-++..|........+. ...++ -..+.|+-|.--|..+++.-|-.|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----------~htls---~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----------AHTLS---EHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----------ceehh---hhCcceeEEeecCCCCceeEccCC
Confidence 468898854 34699999999999999886653211 11111 256789999999999999887889
Q ss_pred CeEEEeecCc
Q 043572 110 QCLFLTDSLL 119 (997)
Q Consensus 110 ~~l~~~~l~~ 119 (997)
+.-|+|..+.
T Consensus 77 rnayVw~~~~ 86 (361)
T KOG1523|consen 77 RNAYVWTQPS 86 (361)
T ss_pred CCccccccCC
Confidence 9999998853
No 256
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=45.65 E-value=3.1 Score=50.26 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=32.5
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCcc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKDV 987 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~ 987 (997)
-+|++|+.+-- ..++--|||+|++.|.+... ...|| =+..|-..-
T Consensus 644 LkCs~Cn~R~K--d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWK--DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchh--hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 48999995544 35567899999999999762 34599 556675443
No 257
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=44.98 E-value=52 Score=29.81 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 379 EEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 379 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
-.....++..|++++|+..++......+.. ......+...|..++..++|++|+.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345677899999999999998765322111 11234555678889999999999999876
No 258
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=44.82 E-value=5.6e+02 Score=29.75 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=50.0
Q ss_pred eeccccccccCCCCCCCccceeeeeEEeecCCeEEEEcCCce-----------EEEEEeCCCCCCCCCCCCCCCCccccc
Q 043572 11 LVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGS-----------LILLSLDPTAATTLHVPNTTPSQQHVS 79 (997)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~I~ci~~~~~~l~iGT~~G~-----------ll~y~~~~~~~~~~~~~~~~~~~~~~~ 79 (997)
-+...+.|+.. -+......+ .+.+++.||.-+.+-.++-. |..|...+.
T Consensus 12 ~Yrk~~ly~m~-W~~~~~l~~-~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~------------------ 71 (410)
T PF04841_consen 12 YYRKRELYSMS-WSLKDDLSD-YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK------------------ 71 (410)
T ss_pred EEEEEEeccCC-CCccccccc-eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC------------------
Confidence 56677777763 322222223 33455667777777655521 333333221
Q ss_pred cccccccCCCcceEEEeecccCcEEEEecCCeEEEeecC
Q 043572 80 FLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSL 118 (997)
Q Consensus 80 ~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~ 118 (997)
.+.+......+|-.|.--.+.+ |+|+..||++++|++.
T Consensus 72 ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 72 LLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence 1111123446788888877666 6666899999999984
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=44.48 E-value=71 Score=30.96 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 379 EEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 379 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
-.+.+..+++|+|++|...++.+...-+- ..+-...+...|+.+|.+++|++|...+.+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34668999999999999999887643210 112234556677889999999999876643
No 260
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=44.33 E-value=5.2 Score=42.19 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=32.3
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC--cccCCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--ESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--~~~~~t~~ 981 (997)
++..-+|.+|+-.|.- =+..||||.|.+-|.+.+. ..-||.|+
T Consensus 22 LDs~lrC~IC~~~i~i--p~~TtCgHtFCslCIR~hL~~qp~CP~Cr 66 (391)
T COG5432 22 LDSMLRCRICDCRISI--PCETTCGHTFCSLCIRRHLGTQPFCPVCR 66 (391)
T ss_pred chhHHHhhhhhheeec--ceecccccchhHHHHHHHhcCCCCCcccc
Confidence 4556789999998874 3468999999999999872 23388443
No 261
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=43.89 E-value=53 Score=23.17 Aligned_cols=30 Identities=20% Similarity=0.008 Sum_probs=25.5
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEee
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTD 116 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~ 116 (997)
...+|..|..-|..+.++.+-.|++|++|+
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567899999999988777766789999985
No 262
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.84 E-value=4.7e+02 Score=30.09 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=60.5
Q ss_pred cccccCCCCCCCccc--eeeeeEEeecCC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc
Q 043572 16 SQFDLSHYSRSSPIR--SLSISPISDCQV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP 90 (997)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~I~ci~~~~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
...|+..-.|-..++ +-+|+|++.+.. .|+-|+-+|++-++.....+. .+ ..-+ ....
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~---------~~wk-------~~g~ 331 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SG---------KEWK-------FDGE 331 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cC---------ceEE-------eccc
Confidence 357777777765554 469999997744 699999999999998875221 11 1112 2346
Q ss_pred ceEEEeecccC-cEEEEecCCeEEEeecCcc
Q 043572 91 VESIFVLDDVG-KVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 91 I~qi~vl~~~~-~lLv~l~d~~l~~~~l~~l 120 (997)
|.++..-|... .+++.+-||+|+-|++-..
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNP 362 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence 88888777644 3555556799999998664
No 263
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.40 E-value=48 Score=37.32 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=49.6
Q ss_pred eeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|+++ .|+.+.|||-+|.+.+|....-.. ..+.+. .+---|+.+..+|+...+.=+.+
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--------------~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--------------LQYVKE--AHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--------------eEeehh--hheeeeeeEEEcCCcCccccccc
Confidence 358899885 577999999999999999876432 111111 12225888999998886666455
Q ss_pred CCeEEEeecC
Q 043572 109 DQCLFLTDSL 118 (997)
Q Consensus 109 d~~l~~~~l~ 118 (997)
|.+..+..|+
T Consensus 345 ~~~~~v~~l~ 354 (398)
T KOG0771|consen 345 DNEAAVTKLA 354 (398)
T ss_pred CCceeEEEEe
Confidence 6677776553
No 264
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.36 E-value=2.3e+02 Score=30.03 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=47.9
Q ss_pred EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEee-cccCcEEEEec--CCeEE
Q 043572 37 ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVL-DDVGKVLLLFC--DQCLF 113 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl-~~~~~lLv~l~--d~~l~ 113 (997)
++.||.+|.-.++||.+-.|.+..+... +...-++ =..-||-|..-. |..+-+|. -| ||+|.
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s-----------~ll~~L~---Gh~GPVwqv~wahPk~G~iLA-ScsYDgkVI 83 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQS-----------KLLAELT---GHSGPVWKVAWAHPKFGTILA-SCSYDGKVI 83 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCc-----------eeeeEec---CCCCCeeEEeecccccCcEee-EeecCceEE
Confidence 3779999999999999999988765421 0111111 256799998877 77777887 44 89999
Q ss_pred Eeec
Q 043572 114 LTDS 117 (997)
Q Consensus 114 ~~~l 117 (997)
+|.-
T Consensus 84 iWke 87 (299)
T KOG1332|consen 84 IWKE 87 (299)
T ss_pred EEec
Confidence 9864
No 265
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=43.29 E-value=11 Score=28.27 Aligned_cols=29 Identities=21% Similarity=0.610 Sum_probs=16.5
Q ss_pred CccccCccCC--ccEEEcCCCeEEEecccccc
Q 043572 943 CDSCHARLGT--KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 943 C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~~ 972 (997)
|++|.. ... ..=++-||||++-..|+.+.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 889988 533 22346789999999999875
No 266
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.90 E-value=79 Score=40.18 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=54.5
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEee---cccCcEEE
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVL---DDVGKVLL 105 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl---~~~~~lLv 105 (997)
..|..++.. +|.|.=|.++|.++.+.+.....+.. + . +..+.++|.++ -+..++|.
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~--~---~-------------~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT--P---G-------------SQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC--C---C-------------CCCCcccceEeccchhhhHHhh
Confidence 355556643 56799999999999998876443210 0 0 11123333333 22334444
Q ss_pred Eec-CCeEEEeecCccccccccccccc---eEEEEeec
Q 043572 106 LFC-DQCLFLTDSLLTQPLKKLGFLKG---ISVIAKRI 139 (997)
Q Consensus 106 ~l~-d~~l~~~~l~~l~~~~~~~~~kg---~~~f~~~~ 139 (997)
+-+ +|+..+|||..=+|+-++..+.| |+.++.++
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 333 45899999987677666655555 88888876
No 267
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=42.85 E-value=1.9e+02 Score=31.92 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=51.3
Q ss_pred cccccCCCCCCCcc--ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceE
Q 043572 16 SQFDLSHYSRSSPI--RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVES 93 (997)
Q Consensus 16 ~~~~~~~~~~~~~~--~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~q 93 (997)
++.|.+.++-.... ....+-|....+.-|.-|++|.++..+.+.....- .+-+ . .-..|-.
T Consensus 220 kiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l------------~tli-h----HceaVLh 282 (499)
T KOG0281|consen 220 KIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPL------------NTLI-H----HCEAVLH 282 (499)
T ss_pred EEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchh------------hHHh-h----hcceeEE
Confidence 45665444332222 34688999966666777999999999988754310 0111 1 1223444
Q ss_pred EEeecccCcEEEEecCCeEEEeecCccc
Q 043572 94 IFVLDDVGKVLLLFCDQCLFLTDSLLTQ 121 (997)
Q Consensus 94 i~vl~~~~~lLv~l~d~~l~~~~l~~l~ 121 (997)
+.+ ..+.++-|--|.++.+|+|.+-.
T Consensus 283 lrf--~ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 283 LRF--SNGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred EEE--eCCEEEEecCCceeEEEeccCch
Confidence 333 35544444447799999997643
No 268
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=42.79 E-value=6.9e+02 Score=30.22 Aligned_cols=237 Identities=13% Similarity=0.080 Sum_probs=131.7
Q ss_pred cceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 29 IRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 29 ~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..+..++|...++++++-|+.++.|..|....... . .+.+.+ ....|-.+...+..+ .||+=+
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~----------i--~~~l~G----H~g~V~~l~~~~~~~-~lvsgS 268 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL----------I--LTRLVG----HFGGVWGLAFPSGGD-KLVSGS 268 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceE----------E--EeeccC----CCCCceeEEEecCCC-EEEEEe
Confidence 35678999998999999999999996666654321 0 122222 566899988777455 555444
Q ss_pred -CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 -DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 -d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+++++|+...-+-+..+. |.+.... +..+
T Consensus 269 ~D~t~rvWd~~sg~C~~~l~---gh~stv~---------------------------------------------~~~~- 299 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHSLQ---GHTSSVR---------------------------------------------CLTI- 299 (537)
T ss_pred cCCcEEeEecCCCcEEEEec---CCCceEE---------------------------------------------EEEc-
Confidence 8999999965433222111 1110000 0000
Q ss_pred ccccCCceEEEEE--ECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEECCc-EEEEEecCCcceeeecCCCC
Q 043572 188 EQHCRGDNVFAVI--IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNG-YSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 188 ~~~~~~~~~l~Va--~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~-y~lidl~~g~~~~l~~~~~~ 264 (997)
. ....+. .+..|.+|.+..+....+..- ..++|.++...++.++.|+..+ ..+.|+.+++-- -...+
T Consensus 300 -----~-~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl--~sl~g- 369 (537)
T KOG0274|consen 300 -----D-PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCL--KSLSG- 369 (537)
T ss_pred -----c-CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEecCCEEEEEecCceEEEEEhhhceee--eeecC-
Confidence 0 011222 455678888886644433221 4567899998888888886655 667787655322 22222
Q ss_pred CCCCceEE--cCCCCeEEEE-eCCeEEEEccCCCc-cccccccC-CCCCeEEEeCcEEEEE-ECCeEEEEecCCCceEEE
Q 043572 265 SCPPMLKL--LSKEQKVLLL-VDNVGVFVDAHGQP-VGGSLVFR-KSPDAVGELSMYVVVL-RGGKMELYHKKSGICVQA 338 (997)
Q Consensus 265 ~~~p~i~~--~~~~~e~Ll~-~~~~g~fv~~~G~~-~r~~i~w~-~~P~~i~~~~PYll~~-~~~~ieI~~~~~~~lvQ~ 338 (997)
....+.. +..++..+-+ .|.....-|..+.. -..++.=. +....+....-+++.- .++.|.+-+..+++.+++
T Consensus 370 -H~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 370 -HTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred -CcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 1122222 2221222222 45445555544331 10021111 1123444445555543 578899999999999999
Q ss_pred EecC
Q 043572 339 VTFG 342 (997)
Q Consensus 339 i~~~ 342 (997)
+.-+
T Consensus 449 ~~~~ 452 (537)
T KOG0274|consen 449 LEGR 452 (537)
T ss_pred eccC
Confidence 9765
No 269
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=42.58 E-value=43 Score=37.74 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFL 437 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~ 437 (997)
+.|++.|.++..+.+++..-..+..+-..+..|+.+.|-.+|.-++|++|+++-.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 7899999999999998876655544445688999999999999999999999764
No 270
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.40 E-value=65 Score=36.08 Aligned_cols=80 Identities=20% Similarity=0.126 Sum_probs=54.8
Q ss_pred ceeeeeEEe--ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 30 RSLSISPIS--DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 30 ~~~~I~ci~--~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..+.|+|+. ..++.||+|+..|.|-.|.+...... ..+.+. -.-.|..|.+.|....+..|-
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~-------------g~~~kg---~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL-------------GCGLKG---ITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceee-------------ccccCC---ccCCcceEEEcCCCceEEeec
Confidence 346677766 35889999999999998888765421 111111 233688899999888444444
Q ss_pred cCCeEEEeecCccccccc
Q 043572 108 CDQCLFLTDSLLTQPLKK 125 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~ 125 (997)
-|+.|++|+..+-.++++
T Consensus 310 LDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred cceeEEEeecccchhhhh
Confidence 478999999988555554
No 271
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=41.84 E-value=16 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=27.3
Q ss_pred cCCCcCccccCccCC---ccEEEcCCCeEEEeccccccC
Q 043572 938 NDESLCDSCHARLGT---KLFAMYPDDTIVCYKCYRRQG 973 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~---~~f~v~p~g~~~H~~C~~~~~ 973 (997)
...+.|.+|++.|.. ..+-.-.|+.++|..|.....
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 9 FKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 356789999999975 334444689999999998753
No 272
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.76 E-value=2e+02 Score=36.07 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhc-CCCCChHHHHhhccCCCchHHHHHH-------------HHhhcchHHHHHHHHHhcCCHHHHHHHHh
Q 043572 768 PVQERLQIFLQS-SDLYDPEDVLDLIEGSELWLEKAIL-------------YRKLGQETLVLQILALKLEDSEAAEQYCA 833 (997)
Q Consensus 768 ~~r~kL~~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~L-------------l~klg~h~eAL~il~~~l~D~~~Ae~yC~ 833 (997)
+.+.++..|+.. +..-|-+.+.+++..++-.++.++. +-..|.+++||++++.+ .+.+.--.||.
T Consensus 489 ~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~-~~~el~yk~ap 567 (911)
T KOG2034|consen 489 EVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQ-RNPELFYKYAP 567 (911)
T ss_pred HHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHhhh
Confidence 445556666554 3455667777777665433333222 34555666666666644 55555555553
No 273
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.46 E-value=22 Score=33.27 Aligned_cols=15 Identities=7% Similarity=0.414 Sum_probs=11.9
Q ss_pred EcCCCcCccccCccC
Q 043572 937 INDESLCDSCHARLG 951 (997)
Q Consensus 937 I~~~~~C~vC~k~l~ 951 (997)
....+.|+.||+++.
T Consensus 6 lGtKr~Cp~cg~kFY 20 (129)
T TIGR02300 6 LGTKRICPNTGSKFY 20 (129)
T ss_pred hCccccCCCcCcccc
Confidence 345689999999875
No 274
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.04 E-value=5.3e+02 Score=28.39 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=47.5
Q ss_pred eeE--EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEee-cccCcEEEEec-C
Q 043572 34 ISP--ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVL-DDVGKVLLLFC-D 109 (997)
Q Consensus 34 I~c--i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl-~~~~~lLv~l~-d 109 (997)
|.| .+.||+++.-|++|+.+=.|....+.+.=. .+.--+ -+...|-+|.=. |+.++++.+-| |
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~----------~Ts~Wr---ah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS----------CTSSWR---AHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceE----------EeeeEE---ecCCcEEEEEecCccccceEEEEecC
Confidence 555 457899999999999999999754442111 111111 244556666655 88888887444 8
Q ss_pred CeEEEeec
Q 043572 110 QCLFLTDS 117 (997)
Q Consensus 110 ~~l~~~~l 117 (997)
+++.+|.=
T Consensus 83 rtv~iWEE 90 (361)
T KOG2445|consen 83 RTVSIWEE 90 (361)
T ss_pred Cceeeeee
Confidence 99999975
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=40.59 E-value=47 Score=22.69 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.6
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
|..++.+|...|++++|++.+.+..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55789999999999999999988654
No 276
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=40.31 E-value=25 Score=32.33 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.2
Q ss_pred EcCCCcCccccCccC
Q 043572 937 INDESLCDSCHARLG 951 (997)
Q Consensus 937 I~~~~~C~vC~k~l~ 951 (997)
....+.|+.||+++.
T Consensus 6 lGtKR~Cp~CG~kFY 20 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFY 20 (108)
T ss_pred cCCcccCCCCcchhc
Confidence 446789999999985
No 277
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=40.18 E-value=1.1e+03 Score=31.71 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
-+.++..|++++|+..++..-...+.. ...+...|..++.+++|++|.++|.+.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTD----SYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456778999999999998765322211 124445688899999999999999763
No 278
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=40.16 E-value=66 Score=31.17 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
....+...|++++|+..++..-...+.. ...+...|..+...|+|++|...|.+.-..+|.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567889999999999987754322211 234556777888899999999999874334443
No 279
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=39.85 E-value=40 Score=36.86 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=45.7
Q ss_pred EEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC-CeEEE
Q 043572 36 PISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD-QCLFL 114 (997)
Q Consensus 36 ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d-~~l~~ 114 (997)
+++.|+.-|.+|.+.|.++.+.+....++ . .+.+..+ .+.+.|.|...-.+.. +||+.|| ++|--
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~----~-------~ttl~~s--~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNNEPP----K-------CTTLTHS--KSGSTVRQTSFSRDGS-ILVLVCDDGTVWR 379 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCCCCc----c-------CceEEec--cccceeeeeeecccCc-EEEEEeCCCcEEE
Confidence 45778999999999999999999866542 0 1111111 4677899999887777 6663554 46655
Q ss_pred ee
Q 043572 115 TD 116 (997)
Q Consensus 115 ~~ 116 (997)
|+
T Consensus 380 wd 381 (385)
T KOG1034|consen 380 WD 381 (385)
T ss_pred EE
Confidence 54
No 280
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=39.65 E-value=68 Score=40.17 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=50.8
Q ss_pred ceeeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 30 RSLSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 30 ~~~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
+.+..+|++.- +.+|.||+.+|.|..|.-.... ..+.+-. + ..||.-|.|-.+...+|. -|
T Consensus 576 ~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~-------------AKT~lp~---l-G~pI~~iDvt~DGkwila-Tc 637 (794)
T PF08553_consen 576 SKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKR-------------AKTALPG---L-GDPIIGIDVTADGKWILA-TC 637 (794)
T ss_pred cCCCceEEEecCCceEEEEeCCCcEEeecccchh-------------hhhcCCC---C-CCCeeEEEecCCCcEEEE-ee
Confidence 34578998865 5599999999999999643211 0111111 2 359999999999997777 99
Q ss_pred CCeEEEeec
Q 043572 109 DQCLFLTDS 117 (997)
Q Consensus 109 d~~l~~~~l 117 (997)
+..|.+++.
T Consensus 638 ~tyLlLi~t 646 (794)
T PF08553_consen 638 KTYLLLIDT 646 (794)
T ss_pred cceEEEEEE
Confidence 999988775
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=39.46 E-value=28 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHhcCCCCc
Q 043572 415 VHAQIGFLLLFDLHFEEAVDHFLHSETMQP 444 (997)
Q Consensus 415 i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp 444 (997)
+.-..|..++..++|++|++.|.+.=.+||
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 345578888999999999999987423455
No 282
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=39.27 E-value=5.5e+02 Score=28.20 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=51.4
Q ss_pred eeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.|+|++.+.. -|.=|+.|+.+-.|.....+. ....+... .-.||..|..=|..+.+|| -.|.
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~sa-----------KrA~K~~q----d~~~vrsiSfHPsGefllv-gTdH 237 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSA-----------KRAFKVFQ----DTEPVRSISFHPSGEFLLV-GTDH 237 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHH-----------HHHHHHhh----ccceeeeEeecCCCceEEE-ecCC
Confidence 6888887744 477789999988777654321 01112111 2348999999999998888 6665
Q ss_pred -eEEEeecCccc
Q 043572 111 -CLFLTDSLLTQ 121 (997)
Q Consensus 111 -~l~~~~l~~l~ 121 (997)
++++|+..+++
T Consensus 238 p~~rlYdv~T~Q 249 (430)
T KOG0640|consen 238 PTLRLYDVNTYQ 249 (430)
T ss_pred CceeEEecccee
Confidence 99999998865
No 283
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.97 E-value=49 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.9
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
|..++.-|.+.|++++|++++.++...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 678889999999999999999998753
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=38.94 E-value=23 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 415 VHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 415 i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
++...|..+...+++++|+++|.+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556778888889999999999874
No 285
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=38.82 E-value=5.9e+02 Score=28.36 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCC----CCcccHHHHHHHH--HHcCChhHHHH
Q 043572 519 ELAIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPS----ENSCIVEELETLL--DESGHLRTLAF 592 (997)
Q Consensus 519 ~~a~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~----~n~c~~e~~~~~L--~~~~~~~~L~~ 592 (997)
.+|+..+..-++.. .+....|=-+|..||...++.++...|++. ....+.+.+..-+ ..+|.-.+-+.
T Consensus 231 ~~AV~~~e~v~eQn------~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 231 QKAVEALERVLEQN------PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred HHHHHHHHHHHHhC------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHH
Confidence 44555554444322 223445556699999999998888888763 2344444443333 33455555566
Q ss_pred HHhhcCChHHH
Q 043572 593 LYASKGMSSKA 603 (997)
Q Consensus 593 ly~~~~~~~~A 603 (997)
++.+-.++...
T Consensus 305 l~~Ql~r~Pt~ 315 (389)
T COG2956 305 LTRQLRRKPTM 315 (389)
T ss_pred HHHHHhhCCcH
Confidence 66665555443
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=38.46 E-value=6.3e+02 Score=28.56 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=53.6
Q ss_pred EEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCC------------CCCCceEEcCCCCeEEEE-eCCeEEEEcc-CCC
Q 043572 231 VWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDV------------SCPPMLKLLSKEQKVLLL-VDNVGVFVDA-HGQ 295 (997)
Q Consensus 231 ~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~------------~~~p~i~~~~~~~e~Ll~-~~~~g~fv~~-~G~ 295 (997)
...++.++++.. ....-+|+.+|+..--.+.... ...|.+ . ++.+.++ .++...-+|. +|
T Consensus 187 ~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~-~~~vy~~~~~g~l~a~d~~tG- 261 (377)
T TIGR03300 187 VIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---D-GGQVYAVSYQGRVAALDLRSG- 261 (377)
T ss_pred EEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---E-CCEEEEEEcCCEEEEEECCCC-
Confidence 345677888866 4677899988865322222110 011222 1 2233333 3334444554 33
Q ss_pred ccccccccCCC---CCeEEEeCcEEEEEE-CCeEEEEecCCCceEEE
Q 043572 296 PVGGSLVFRKS---PDAVGELSMYVVVLR-GGKMELYHKKSGICVQA 338 (997)
Q Consensus 296 ~~r~~i~w~~~---P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~ 338 (997)
.+.|... +...++...+|++.. .+.+...+..+|+.+-.
T Consensus 262 ----~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 262 ----RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred ----cEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 3456422 334455667777765 46788889989876643
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.44 E-value=7.9e+02 Score=31.97 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=75.4
Q ss_pred ceEEEEEECceEEEEEEeCCeEEEEEeEecCCc--ceEEEEeC---CEEEEEEC-CcEEEEEecCCcc-eeeecCCCCCC
Q 043572 194 DNVFAVIIGKRLVLIELVNGSFVILKEIQCMDG--VKTMVWLN---DSIIVGTV-NGYSLFSCVTGQS-GVIFTLPDVSC 266 (997)
Q Consensus 194 ~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~--~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~-~~l~~~~~~~~ 266 (997)
+..|+|..+++|++|..++..|..-+|+.+++. +..+.|.. ..+++++. ..|..++..-... .+-.+..+
T Consensus 316 s~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D--- 392 (928)
T PF04762_consen 316 SEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPND--- 392 (928)
T ss_pred CCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccC---
Confidence 356888889899999999888888899887764 45688995 45899987 7888877641100 00000000
Q ss_pred CCceEEcCCCCeEEEEeCCeEEEEccCCCcccc----ccccCCCCCeEEEeCcE--EEEEE-CCeEEEEecCC
Q 043572 267 PPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGG----SLVFRKSPDAVGELSMY--VVVLR-GGKMELYHKKS 332 (997)
Q Consensus 267 ~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~----~i~w~~~P~~i~~~~PY--ll~~~-~~~ieI~~~~~ 332 (997)
.-.+..++ +..++|+.=. .+..-.+ .|..++++..+++...- +.+++ ++.|.++....
T Consensus 393 ~g~vaVID-G~~lllTpf~-------~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 393 NGTVAVID-GNKLLLTPFR-------RAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ceEEEEEe-CCeEEEeccc-------ccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 00122222 2233332100 1121111 56777888888887554 55554 56699998543
No 288
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.04 E-value=3.6e+02 Score=33.26 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=63.9
Q ss_pred ECceEEEEEEeCCeEEEEEeEecC-CcceEEEEeCC--EEEEEECCcEEEEEecCCcceeeecCCCCCCCCce---EEcC
Q 043572 201 IGKRLVLIELVNGSFVILKEIQCM-DGVKTMVWLND--SIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPML---KLLS 274 (997)
Q Consensus 201 ~kkki~i~~~~~~~~~~~kei~~~-~~~~~l~~~~~--~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i---~~~~ 274 (997)
....|.||..++. .++.+... ..+..|.|..+ .|||--.....++++. |....-+..+.....+-| ..+.
T Consensus 62 a~~~I~If~~sG~---lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 62 ARPYIRIFNISGQ---LLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred cceeEEEEecccc---chHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec
Confidence 4456788888763 22332222 26789999975 3787777788888885 655544444433333333 2233
Q ss_pred CCCeEEEEeCCeEEEEccCCCcccc---ccccCCCC-CeEEEeCc
Q 043572 275 KEQKVLLLVDNVGVFVDAHGQPVGG---SLVFRKSP-DAVGELSM 315 (997)
Q Consensus 275 ~~~e~Ll~~~~~g~fv~~~G~~~r~---~i~w~~~P-~~i~~~~P 315 (997)
++-++|..++-...++..+++... ++..+..| ....+..|
T Consensus 138 -~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~ 181 (829)
T KOG2280|consen 138 -NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQP 181 (829)
T ss_pred -CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecC
Confidence 457777777666667766765442 44444433 44444443
No 289
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=37.23 E-value=30 Score=28.32 Aligned_cols=26 Identities=12% Similarity=0.488 Sum_probs=21.6
Q ss_pred CcCccccCccCC--ccEEEcCCCeEEEe
Q 043572 941 SLCDSCHARLGT--KLFAMYPDDTIVCY 966 (997)
Q Consensus 941 ~~C~vC~k~l~~--~~f~v~p~g~~~H~ 966 (997)
.+|+-||+.|.+ ...+|--||.+++.
T Consensus 4 ~~CsFcG~~I~PGtG~m~Vr~Dg~v~~F 31 (66)
T COG2075 4 RVCSFCGKKIEPGTGIMYVRNDGKVLRF 31 (66)
T ss_pred eEecCcCCccCCCceEEEEecCCeEEEE
Confidence 689999999965 56888899998875
No 290
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=36.81 E-value=2e+02 Score=32.55 Aligned_cols=69 Identities=14% Similarity=0.001 Sum_probs=45.3
Q ss_pred eeeeEEe---ec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE
Q 043572 32 LSISPIS---DC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL 105 (997)
Q Consensus 32 ~~I~ci~---~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv 105 (997)
+|+.|.. .| |++|.+||+.|.+-.++-...... ++.| -..++|.-+...+....++-
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--------tilQ---------aHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--------TILQ---------AHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHH--------HHhh---------hhcccceeEEEccCCCEEEE
Confidence 5666643 23 789999999999776655322210 1111 26789999999998885544
Q ss_pred EecCCeEEEeec
Q 043572 106 LFCDQCLFLTDS 117 (997)
Q Consensus 106 ~l~d~~l~~~~l 117 (997)
.=.||.|.+|..
T Consensus 156 gD~gG~iKyWqp 167 (464)
T KOG0284|consen 156 GDKGGMIKYWQP 167 (464)
T ss_pred cCCCceEEeccc
Confidence 333568888864
No 291
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=36.76 E-value=3.9e+02 Score=31.17 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=87.6
Q ss_pred eeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 33 SISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 33 ~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
++.|...- -+++|-|..-| +-++.+....+ +.+ +.....+. ...-|..+.++|+..-|||.--.
T Consensus 420 EvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~---k~P-----vsqLdcl~----rdnyiRSckL~pdgrtLivGGea 486 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGN---KSP-----VSQLDCLN----RDNYIRSCKLLPDGRTLIVGGEA 486 (705)
T ss_pred cEEEEEEecCCcceeEecCCCe-EEEeeccCCCC---CCc-----cccccccC----cccceeeeEecCCCceEEecccc
Confidence 67776654 44799999888 66777765432 111 11122221 22368888999998877773333
Q ss_pred CeEEEeecCccccccc--cc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 QCLFLTDSLLTQPLKK--LG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~--~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.+|.+|+|.+-.|--+ ++ ....|-..++.+
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~sp----------------------------------------------- 519 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISP----------------------------------------------- 519 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-----------------------------------------------
Confidence 4999999966322111 00 011222222221
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEE-ECCcEEEEEecCCc
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVG-TVNGYSLFSCVTGQ 254 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg-~~~~y~lidl~~g~ 254 (997)
+....+.....-.|.||.+.+. ..++.+. .+|.+.+|... |..|+-| -.+...-.|+.+|.
T Consensus 520 -----DakvcFsccsdGnI~vwDLhnq--~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 520 -----DAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred -----ccceeeeeccCCcEEEEEcccc--eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 1122344455666778777664 3344443 35678888777 5557777 55677778887664
No 292
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.25 E-value=3.4e+02 Score=34.80 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=46.6
Q ss_pred eeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc-CcEEEE
Q 043572 31 SLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV-GKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~-~~lLv~ 106 (997)
+.-||++.++ |+-+..|..||.+..|...-..... .+...+-.. .+.||....+=+.. +.++-.
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds--------~v~~~R~h~----~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS--------LVCVYREHN----DVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCccc--------cceeecccC----CcccceeEEeecCCCcceeee
Confidence 3444554443 6789999999999999887554321 111111100 23358888876643 324443
Q ss_pred ecCCeEEEeecCc
Q 043572 107 FCDQCLFLTDSLL 119 (997)
Q Consensus 107 l~d~~l~~~~l~~ 119 (997)
-.||.|.++++-.
T Consensus 1276 s~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRM 1288 (1387)
T ss_pred ccCCeEEEEeccc
Confidence 4589999999854
No 293
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=36.16 E-value=21 Score=39.25 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=34.9
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccCcccCCCCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRDFKK 985 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~t~~~f~~ 985 (997)
+---|++|.-.|... +.=.+|||.+...|..+. .+.||+++.+=.
T Consensus 47 ~lleCPvC~~~l~~P-i~QC~nGHlaCssC~~~~-~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP-IFQCDNGHLACSSCRTKV-SNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc-ceecCCCcEehhhhhhhh-cccCCccccccc
Confidence 445799999999853 445678999999999664 467999887743
No 294
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.08 E-value=12 Score=29.66 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=6.2
Q ss_pred cCccccCccCC
Q 043572 942 LCDSCHARLGT 952 (997)
Q Consensus 942 ~C~vC~k~l~~ 952 (997)
.|++|+++|+.
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999999974
No 295
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=35.92 E-value=4.6e+02 Score=32.18 Aligned_cols=51 Identities=12% Similarity=-0.153 Sum_probs=29.8
Q ss_pred HHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 384 DLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 384 ~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
-++..|++++|+..++..-...+. ....+...|..++..++|++|...|.+
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELDPR----VTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345677888887777664321111 112334456666667777777777765
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=35.69 E-value=60 Score=22.02 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=21.6
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
+..++..|...|++++|++.+.+...
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45788999999999999999998664
No 297
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=35.69 E-value=68 Score=39.95 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=45.0
Q ss_pred eeeeeEEeec------CC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-c-CCCcceEEEeeccc
Q 043572 31 SLSISPISDC------QV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-V-ADSPVESIFVLDDV 100 (997)
Q Consensus 31 ~~~I~ci~~~------~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~I~qi~vl~~~ 100 (997)
++..+-|++. ++ -|||||++|.|+-........ +... -++.+.+ | ...||.-|.+.+..
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~--~~~~---------~llEElqvf~~~~pI~~m~Ls~~~ 475 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKES--GKSN---------VLLEELQVFPDAEPIRSMQLSSKR 475 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCcc--Cccc---------eeEEEEeecCCCCceeEEEecccC
Confidence 5666666654 22 499999999999777665531 1100 1223333 2 23689999999999
Q ss_pred CcEEEEecCCeEEE
Q 043572 101 GKVLLLFCDQCLFL 114 (997)
Q Consensus 101 ~~lLv~l~d~~l~~ 114 (997)
+.|.| -+++.|.-
T Consensus 476 ~~LyV-gs~~gV~q 488 (737)
T KOG3611|consen 476 GSLYV-GSRSGVVQ 488 (737)
T ss_pred CeEEE-EccCcEEE
Confidence 97888 44444433
No 298
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=35.42 E-value=1.1e+02 Score=32.78 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.+...++.+|+|++|+...+......+.+ .......-..|+.++..++|++|...|.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~ 94 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDR 94 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 35688999999999999998876432222 22334455688889999999999988864
No 299
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=35.07 E-value=7.3e+02 Score=28.32 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCcccHHHHHHHHHHcCCh----hHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccc-------ccccccccccc
Q 043572 569 ENSCIVEELETLLDESGHL----RTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVEN-------DLLDGCADVMS 637 (997)
Q Consensus 569 ~n~c~~e~~~~~L~~~~~~----~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~-------~l~~~~~~~l~ 637 (997)
+++-..+.+.+.+..+.+. ......|...|++..++.++-++.+. |.+.|+.+.. .+.++..+ -.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka---~~l~~~e~~~le~~a~~glL~q~~~-~~ 243 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA---GLLSDEEAARLEQQAWEGLLQQARD-DN 243 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc---cCCChHHHHHHHHHHHHHHHHHHhc-cc
Confidence 3555566666666655544 34467899999999999999999875 3444442210 00000000 00
Q ss_pred chhhhHHHHHHhcCC-----CCCHHHHHHHHhhhhccC-chhhhhhcccccccCCCChh--HHHHHhhccChHHHHHHHH
Q 043572 638 GREVAATEASKILEE-----SSDEDLILQHLGWIADIN-AVLAVKVLTSEKRINQLSPD--KVIAAIDSKKVEILQRYLQ 709 (997)
Q Consensus 638 ~~~~~~~~~~~~L~~-----~~~~~li~~~~~wll~~~-p~~~l~if~~~~~~~~l~~~--~Vl~~L~~~~~~~~~~YLE 709 (997)
| +......+++ ..+.++...|+..+++.+ .+.|.+++.+.. ....|+. ..++++...++.-.++-+|
T Consensus 244 ~----~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 G----SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred c----chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHHHHhhcCCCCchHHHHHHH
Confidence 0 0000011111 135666666776666643 345666664432 1234443 3345555556677788888
Q ss_pred HHHhcCCCCChHHHHHHHHHHHH
Q 043572 710 WLIEDQDSDDTQFHTLYALSLAK 732 (997)
Q Consensus 710 ~li~~~~~~~~~~h~~L~~lyi~ 732 (997)
+=+. +...+|.++-.|..+|++
T Consensus 319 ~~l~-~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 319 KWLK-QHPEDPLLLSTLGRLALK 340 (400)
T ss_pred HHHH-hCCCChhHHHHHHHHHHH
Confidence 8776 345678888888877743
No 300
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=34.80 E-value=1.7e+02 Score=32.66 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=55.0
Q ss_pred cccccCCCCCCCccc--eeeeeEEeec--CCeEEEEc-CCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc
Q 043572 16 SQFDLSHYSRSSPIR--SLSISPISDC--QVLIYIGT-QSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP 90 (997)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~I~ci~~~--~~~l~iGT-~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
++||....+|.++++ .-.|.|+-.. +.+|+.++ +||.|..|......+ ..... -+-+
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P----------l~KVi--------~~mR 231 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP----------LKKVI--------LTMR 231 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc----------cceee--------eecc
Confidence 478887777765442 2377887754 33555555 999999999987653 11111 1113
Q ss_pred ceEEEeecccCcEEEEecCCeEEEeecCccc
Q 043572 91 VESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ 121 (997)
Q Consensus 91 I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~ 121 (997)
=+.|.-=|+.-.+.++--|..||.|++-.|+
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhc
Confidence 4456667754435553446699999998875
No 301
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=34.61 E-value=1.2e+02 Score=28.28 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=39.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
....++..|++++|+..++..-..++.. .......|..++..++|++|...|.+.
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999997764322211 234455778788899999999988764
No 302
>PF13041 PPR_2: PPR repeat family
Probab=34.44 E-value=55 Score=24.96 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.6
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
|..++.-|.+.|++++|+++|.+..+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 678899999999999999999998864
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=33.78 E-value=1.6e+02 Score=29.42 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCC------------------cccHHHHHHHHHH
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSEN------------------SCIVEELETLLDE 583 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n------------------~c~~e~~~~~L~~ 583 (997)
+..++.|++........ ....+-..|+.+.++.+....|..|++..- ..-..-..++|+.
T Consensus 10 i~vllEYirSl~~~~i~--~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 10 IAVLLEYIRSLNQHNIP--VQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 34467777666443322 123455666666777666556666654211 1224455667766
Q ss_pred cC-ChhHHHHHHhhcCChHHHHHHHHHH
Q 043572 584 SG-HLRTLAFLYASKGMSSKALAIWRVL 610 (997)
Q Consensus 584 ~~-~~~~L~~ly~~~~~~~~AL~il~~l 610 (997)
-+ .+++++.++-.+|++-+||.+.++.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 56 7888888888899999999887764
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=33.58 E-value=44 Score=22.49 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 589 TLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 589 ~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
.++..|...|++++|+++|.++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678889999999999999998864
No 305
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=33.38 E-value=49 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=15.9
Q ss_pred cceeeeeEEee-cCCeEEEEcCC
Q 043572 29 IRSLSISPISD-CQVLIYIGTQS 50 (997)
Q Consensus 29 ~~~~~I~ci~~-~~~~l~iGT~~ 50 (997)
+.+..|.||.. .+.+|+|||.+
T Consensus 2 L~~n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 2 LPNNNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp BSSSCEEEEEE-TTSCEEEEETS
T ss_pred CCCCeEEEEEEcCCcCEEEEeCC
Confidence 34567888764 56689999964
No 306
>PF12854 PPR_1: PPR repeat
Probab=33.35 E-value=57 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.2
Q ss_pred ChhHHHHHHhhcCChHHHHHHHHH
Q 043572 586 HLRTLAFLYASKGMSSKALAIWRV 609 (997)
Q Consensus 586 ~~~~L~~ly~~~~~~~~AL~il~~ 609 (997)
-|..|+.-|.+.|+.++|++++.+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 378899999999999999999875
No 307
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=33.25 E-value=7e+02 Score=27.56 Aligned_cols=134 Identities=11% Similarity=0.154 Sum_probs=71.0
Q ss_pred ceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCCCCCCC--ceEEc-CCCCeE
Q 043572 203 KRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPP--MLKLL-SKEQKV 279 (997)
Q Consensus 203 kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p--~i~~~-~~~~e~ 279 (997)
+|++| |++-+-..+.|+.+..+|+++.+..+.|+|...+..+++...+ .-..+...+.. .+| .+..- ..+.++
T Consensus 75 NkviI--WDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~-n~k~l~~~et~-~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVII--WDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPD-NPKLLHVIETR-SNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEE--EecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCC-Chhheeeeecc-cCCCceEeecCCCCceE
Confidence 34444 4454556778888889999999999999999999999998742 22233333221 112 22222 223355
Q ss_pred EEEeC---CeEEEEccCCCccccccccCCC---CCeEEEeCc-EEEEEE--C-CeEEEEecCCCceEEEEe
Q 043572 280 LLLVD---NVGVFVDAHGQPVGGSLVFRKS---PDAVGELSM-YVVVLR--G-GKMELYHKKSGICVQAVT 340 (997)
Q Consensus 280 Ll~~~---~~g~fv~~~G~~~r~~i~w~~~---P~~i~~~~P-Yll~~~--~-~~ieI~~~~~~~lvQ~i~ 340 (997)
|.+.+ +-...++..-...+.+..-..+ ...++..-+ -+++-. . .-|.|++..+|.++|...
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 55543 1222233211111111111111 112222222 222222 1 248899999999999864
No 308
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=33.24 E-value=1.1e+02 Score=31.58 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.+...+++.|+|++|+..++.....-+- ........-..|..++..++|++|...|.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3557899999999999999887643211 112334555678889999999999988764
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.14 E-value=1.1e+02 Score=36.16 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=42.9
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC-
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD- 109 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d- 109 (997)
++.|.+. .+..|.+|++||.+..|......+- .++ ..=..+.|.-=|+...++| -++
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~------------~~k-------a~~~P~~iaWHp~gai~~V-~s~q 320 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL------------LAK-------AEFIPTLIAWHPDGAIFVV-GSEQ 320 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeee------------eee-------ecccceEEEEcCCCcEEEE-EcCC
Confidence 4444443 4668999999999999998765421 111 1123556676777775666 444
Q ss_pred CeEEEeec
Q 043572 110 QCLFLTDS 117 (997)
Q Consensus 110 ~~l~~~~l 117 (997)
|.|.+||+
T Consensus 321 GelQ~FD~ 328 (545)
T PF11768_consen 321 GELQCFDM 328 (545)
T ss_pred ceEEEEEe
Confidence 79999986
No 310
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=33.05 E-value=28 Score=30.67 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.7
Q ss_pred CCcCccccCccCCccEEEcC-CCeEEEecccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQ 972 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~ 972 (997)
..+|..|+++-|...=...| |...||+.|+...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARKA 69 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccC
Confidence 36899999997743322344 6999999999975
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=32.97 E-value=65 Score=22.94 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=21.8
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
+..|+..|...|++++|+.++.+....
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456899999999999999999886643
No 312
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=32.78 E-value=1e+03 Score=29.21 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=37.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCccc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSE 446 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~~ 446 (997)
..++..|+|++|+...+..-.-.+. ...+...|..++..++|++|++.+.+.=.+||..
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~-----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~ 193 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPD-----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY 193 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC
Confidence 5677888999998888764322111 1234445666777888998888887632245543
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=32.78 E-value=5.7e+02 Score=26.35 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred EEEEE-ECceEEEEEEeCCeEEEEEeEecCCcc-eEEEEeCCEEEEEECCc-EEEEEecCCcceeee---cCCCCCCCCc
Q 043572 196 VFAVI-IGKRLVLIELVNGSFVILKEIQCMDGV-KTMVWLNDSIIVGTVNG-YSLFSCVTGQSGVIF---TLPDVSCPPM 269 (997)
Q Consensus 196 ~l~Va-~kkki~i~~~~~~~~~~~kei~~~~~~-~~l~~~~~~l~vg~~~~-y~lidl~~g~~~~l~---~~~~~~~~p~ 269 (997)
.++++ ....|..+....+ +...++.+++.+ ......++.++|++..+ +..+|+.+|...--+ ..+.......
T Consensus 38 ~v~~~~~~~~l~~~d~~tG--~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 115 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTG--KVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSS 115 (238)
T ss_dssp EEEEEETTSEEEEEETTTS--EEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--
T ss_pred EEEEEcCCCEEEEEECCCC--CEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccc
Q ss_pred eEEcCCCCeEEEEe-CCeEEEEc-cCCCcccc-ccccCCCC------------CeEEEeCcEEEEEECCe--EEEEecCC
Q 043572 270 LKLLSKEQKVLLLV-DNVGVFVD-AHGQPVGG-SLVFRKSP------------DAVGELSMYVVVLRGGK--MELYHKKS 332 (997)
Q Consensus 270 i~~~~~~~e~Ll~~-~~~g~fv~-~~G~~~r~-~i~w~~~P------------~~i~~~~PYll~~~~~~--ieI~~~~~ 332 (997)
....-.++.++++. +...+.+| .+|+.... ++ ...+ ....+....|++...+. +.+ ++.+
T Consensus 116 ~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTT
T ss_pred cCceEecCEEEEEeccCcEEEEecCCCcEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCC
Q ss_pred CceEEEEecCCCCCCCceecccccCCCcEEEEEc-CCeEEEEeecC
Q 043572 333 GICVQAVTFGGEGGGQCIATDEECGAGKLLVVAT-PTKVICYQKVP 377 (997)
Q Consensus 333 ~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s-~~~V~~l~~~~ 377 (997)
+..+-..+.... ...... .++.+++.+ ++.|+++....
T Consensus 193 g~~~w~~~~~~~---~~~~~~----~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 193 GEKLWSKPISGI---YSLPSV----DGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp TEEEEEECSS-E---CECEEC----CCTEEEEEETTTEEEEEETTT
T ss_pred CCEEEEecCCCc---cCCcee----eCCEEEEEeCCCEEEEEECCC
No 314
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.61 E-value=73 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.1
Q ss_pred ChhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 586 HLRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 586 ~~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
.|..++..|.+.|+++.|++++....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 478899999999999999999998775
No 315
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.61 E-value=98 Score=37.68 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=50.3
Q ss_pred eeeeEEe--ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPIS--DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~--~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++ .+|..|.-|.++|.|..|.+..... ++.++. .+.-|..|..-.+.+.|.+.-.|
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~--------------v~~l~~---Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL--------------VKQLKG---HTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCCcc--------------hhhhhc---ccCceeEEEEecCCCEEEecCCC
Confidence 3566655 4688999999999999999986442 222221 45579999988888855554556
Q ss_pred CeEEEeecC
Q 043572 110 QCLFLTDSL 118 (997)
Q Consensus 110 ~~l~~~~l~ 118 (997)
.+|.+|++.
T Consensus 641 nsV~lWD~~ 649 (707)
T KOG0263|consen 641 NSVRLWDLT 649 (707)
T ss_pred CeEEEEEch
Confidence 799999863
No 316
>PHA02926 zinc finger-like protein; Provisional
Probab=32.58 E-value=12 Score=38.52 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=25.9
Q ss_pred cCCCcCccccCccCC------ccEEEc-CCCeEEEecccccc
Q 043572 938 NDESLCDSCHARLGT------KLFAMY-PDDTIVCYKCYRRQ 972 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~------~~f~v~-p~g~~~H~~C~~~~ 972 (997)
+.+..|++|-..+.. .-|.+- ||+|.|+..|...-
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~W 209 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIW 209 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHH
Confidence 356889999976632 236655 68999999999854
No 317
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.42 E-value=1.3e+02 Score=32.76 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 412 LSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 412 l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
..+.+.+.|..++..++|++|.+.|.+.=.+||-
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 4567888999999999999999998773124543
No 318
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=31.99 E-value=51 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.443 Sum_probs=18.2
Q ss_pred CccccCccCCccEEEcCCCeEEEe
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCY 966 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~ 966 (997)
|.-||+.|...+.++--.|.++|.
T Consensus 1 Cd~CG~~I~~eP~~~k~~~~~y~f 24 (37)
T PF08394_consen 1 CDYCGGEITGEPIVVKIGNKVYYF 24 (37)
T ss_pred CCccCCcccCCEEEEEECCeEEEE
Confidence 889999999877766556666654
No 319
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=31.85 E-value=1.7e+02 Score=33.80 Aligned_cols=65 Identities=23% Similarity=0.171 Sum_probs=42.4
Q ss_pred cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 40 CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 40 ~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
|..-+-+|-+.|++-++. +.+.. ..++.+- .+.||..|.|-+...-+.-+=.|..+.+|+|-.
T Consensus 262 ~NaVih~GhsnGtVSlWS--P~ske-----------PLvKiLc----H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWS--PNSKE-----------PLVKILC----HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred ccceEEEcCCCceEEecC--CCCcc-----------hHHHHHh----cCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 344466888888876543 22210 1234443 688999999888777444444578999999977
Q ss_pred cc
Q 043572 120 TQ 121 (997)
Q Consensus 120 l~ 121 (997)
|.
T Consensus 325 ~~ 326 (545)
T KOG1272|consen 325 FY 326 (545)
T ss_pred cc
Confidence 65
No 320
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=15 Score=39.37 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=33.8
Q ss_pred Ec-CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCCCCCC
Q 043572 937 IN-DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITGRDFK 984 (997)
Q Consensus 937 I~-~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~~f~ 984 (997)
|+ ...+|..|=....+. ...||||+|.-+|...- ...+||-|+.+.
T Consensus 235 i~~a~~kC~LCLe~~~~p--SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNP--SATPCGHIFCWSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred CCCCCCceEEEecCCCCC--CcCcCcchHHHHHHHHHHccccCCCcccccC
Confidence 44 458999997777553 34899999999998764 355699666553
No 321
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=30.98 E-value=2e+02 Score=35.63 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=50.8
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
+++|... .|..||=|..+|.|-.+...... .+|+. .-..||.-|.+.|+.+--.+++.|+
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---------------kqfLP---RLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---------------KQFLP---RLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCC---------------ccccc---ccCCeeEEEEEcCCCCeEEEEecCc
Confidence 5555442 36678888888877777665433 12222 1345899999999998777769999
Q ss_pred eEEEeecCcccc
Q 043572 111 CLFLTDSLLTQP 122 (997)
Q Consensus 111 ~l~~~~l~~l~~ 122 (997)
++++..++.++.
T Consensus 315 qI~li~~~dl~~ 326 (792)
T KOG1963|consen 315 QIHLIKASDLEI 326 (792)
T ss_pred eEEEEeccchhh
Confidence 999999988763
No 322
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=30.97 E-value=2.3e+02 Score=32.03 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCcceEEEeecccCcEEEEecCC-eEEEeecCc----cccccccccccc----eEEEEeecccCCcccccccccccccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQ-CLFLTDSLL----TQPLKKLGFLKG----ISVIAKRIRTSDSESTNLLENNSVSS 157 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~-~l~~~~l~~----l~~~~~~~~~kg----~~~f~~~~~~~~~~~~~~~~~~~~~~ 157 (997)
++.||-.|.--|..+..+.+-++. ++-+|.+|+ ..+.+.+..+.| |..++.++..
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA---------------- 143 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA---------------- 143 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc----------------
Q ss_pred ccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCC-eEEEEEeEecCCcceEEEEe--C
Q 043572 158 LANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG-SFVILKEIQCMDGVKTMVWL--N 234 (997)
Q Consensus 158 ~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~--~ 234 (997)
....+..+..+.|.++....+ .+..++ .|+.|.+|+|. |
T Consensus 144 -----------------------------------~NVLlsag~Dn~v~iWnv~tgeali~l~---hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 144 -----------------------------------PNVLLSAGSDNTVSIWNVGTGEALITLD---HPDMVYSMSFNRDG 185 (472)
T ss_pred -----------------------------------hhhHhhccCCceEEEEeccCCceeeecC---CCCeEEEEEeccCC
Q ss_pred CEEEEE-ECCcEEEEEecCCcc
Q 043572 235 DSIIVG-TVNGYSLFSCVTGQS 255 (997)
Q Consensus 235 ~~l~vg-~~~~y~lidl~~g~~ 255 (997)
..+|-+ ..+...++|..+|+.
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTV 207 (472)
T ss_pred ceeeeecccceeEEEcCCCCcE
No 323
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=30.65 E-value=24 Score=27.98 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=22.9
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
=+|..|+++|....| ...+|.++...|..+
T Consensus 27 f~C~~C~~~l~~~~~-~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 27 FKCSKCGKPLNDGDF-YEKDGKPYCKDCYQK 56 (58)
T ss_dssp SBETTTTCBTTTSSE-EEETTEEEEHHHHHH
T ss_pred cccCCCCCccCCCee-EeECCEEECHHHHhh
Confidence 489999999998774 445678888877653
No 324
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=30.62 E-value=14 Score=39.10 Aligned_cols=33 Identities=12% Similarity=0.344 Sum_probs=27.6
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
-+++|+.|+.-|...-+++---.+|+|.+|+.-
T Consensus 91 fGTKCsaC~~GIpPtqVVRkAqd~VYHl~CF~C 123 (383)
T KOG4577|consen 91 FGTKCSACQEGIPPTQVVRKAQDFVYHLHCFAC 123 (383)
T ss_pred hCCcchhhcCCCChHHHHHHhhcceeehhhhhh
Confidence 368999999999887677777789999999874
No 325
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.34 E-value=42 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=20.2
Q ss_pred ccCcEEEc-CCCcCccccCccCCccEEE
Q 043572 931 RSRHVQIN-DESLCDSCHARLGTKLFAM 957 (997)
Q Consensus 931 ~~~~v~I~-~~~~C~vC~k~l~~~~f~v 957 (997)
.-.+|.|+ ..+.|+.||.++.. +|++
T Consensus 39 ~LdyV~ie~G~t~CP~Cg~~~e~-~fvv 65 (115)
T COG1885 39 DLDYVEIEVGSTSCPKCGEPFES-AFVV 65 (115)
T ss_pred CCCeEEEecccccCCCCCCccce-eEEE
Confidence 45788898 67999999999874 4444
No 326
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=29.92 E-value=42 Score=31.42 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=21.1
Q ss_pred CcCccccCccCC--ccEEEcCCCeEEEe
Q 043572 941 SLCDSCHARLGT--KLFAMYPDDTIVCY 966 (997)
Q Consensus 941 ~~C~vC~k~l~~--~~f~v~p~g~~~H~ 966 (997)
..|+.||.+|.+ ...+|..+|.+|++
T Consensus 5 e~CsFcG~kIyPG~G~~fVR~DGkvf~F 32 (131)
T PRK14891 5 RTCDYTGEEIEPGTGTMFVRKDGTVLHF 32 (131)
T ss_pred eeecCcCCcccCCCCcEEEecCCCEEEE
Confidence 479999999965 45778888998876
No 327
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=29.84 E-value=2.4e+02 Score=30.22 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred EEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCccc--
Q 043572 44 IYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ-- 121 (997)
Q Consensus 44 l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~-- 121 (997)
|..|-++|.+..|.+.....-............... .+.||..+.+.+.-++-+..-.+..+..|+++.-.
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as-------h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS-------HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhh-------ccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Q ss_pred ---cccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEE
Q 043572 122 ---PLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFA 198 (997)
Q Consensus 122 ---~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 198 (997)
+.+-..+-+|++-+.+++ ++...-.
T Consensus 241 lq~~~e~~lknpGv~gvrIRp----------------------------------------------------D~KIlAT 268 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRP----------------------------------------------------DGKILAT 268 (323)
T ss_pred ccccceEEecCCCccceEEcc----------------------------------------------------CCcEEee
Q ss_pred EEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE-EEEEECCc
Q 043572 199 VIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS-IIVGTVNG 244 (997)
Q Consensus 199 Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~-l~vg~~~~ 244 (997)
..=.-+|++|.|...+--.+=.+.- +.+.+++|..+. |+.+..+.
T Consensus 269 AGWD~RiRVyswrtl~pLAVLkyHs-agvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKYHS-AGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhhhh-cceeEEEeCCCCchhhhccCC
No 328
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=29.82 E-value=78 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.5
Q ss_pred CeEEEEcCCceEEEEEeCCC
Q 043572 42 VLIYIGTQSGSLILLSLDPT 61 (997)
Q Consensus 42 ~~l~iGT~~G~ll~y~~~~~ 61 (997)
+.+|+||.+|.|+.++....
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG 20 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTG 20 (38)
T ss_dssp TEEEEETTTSEEEEEETTTT
T ss_pred CEEEEeCCCCEEEEEECCCC
Confidence 46899999999988877654
No 329
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=29.38 E-value=2.8e+02 Score=35.99 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=52.6
Q ss_pred EEEEEECceEEEEEEeC-CeEEEEEeEecCCcceEEEEeCCEEEEEEC-CcEEEEEecCC-cceeeecCCCCCCCCceEE
Q 043572 196 VFAVIIGKRLVLIELVN-GSFVILKEIQCMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTG-QSGVIFTLPDVSCPPMLKL 272 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~-~~~~~~kei~~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g-~~~~l~~~~~~~~~p~i~~ 272 (997)
+++.+...||.++.|.+ +....+-=+.+|--+.+|...++.|.+|.- +++..+-.+.. ..-.|+.-+ .+|. -.
T Consensus 1109 ~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd---~~~l-~v 1184 (1366)
T KOG1896|consen 1109 HLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRD---FEPL-NV 1184 (1366)
T ss_pred EEEEccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecC---Cchh-hc
Confidence 57888999999999944 444433223333345677777777777733 45555544311 112223222 2221 11
Q ss_pred cCCCCeEEEEeCCeEEEEc-cCCCc
Q 043572 273 LSKEQKVLLLVDNVGVFVD-AHGQP 296 (997)
Q Consensus 273 ~~~~~e~Ll~~~~~g~fv~-~~G~~ 296 (997)
.. -|||+--+++++.+. .+|+.
T Consensus 1185 ~s--~EFLVdg~~L~flvsDa~rNi 1207 (1366)
T KOG1896|consen 1185 YS--TEFLVDGSNLSFLVSDADRNI 1207 (1366)
T ss_pred ee--eeeEEcCCeeEEEEEcCCCcE
Confidence 11 288888888888775 34443
No 330
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=29.26 E-value=8.7e+02 Score=27.39 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=87.9
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..++|++.- +.-|.||+..| |..+..+...+-..... -.+-.+...++. -+.-||+.|.--++.. .|+.-+
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~--~~s~~~~qvl~~--pgh~pVtsmqwn~dgt-~l~tAS 214 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR--MMSTHHLQVLQD--PGHNPVTSMQWNEDGT-ILVTAS 214 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc--cccccchhheeC--CCCceeeEEEEcCCCC-EEeecc
Confidence 689999953 45799999999 55566654432110000 000001111111 1345899999999877 444233
Q ss_pred --CCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 109 --DQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 109 --d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
|..+.+|+-+.-.-+|-. ....|+++.-..|
T Consensus 215 ~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP---------------------------------------------- 248 (445)
T KOG2139|consen 215 FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP---------------------------------------------- 248 (445)
T ss_pred cCcceEEEEcCCCCCcccccccCCCceeeEEEcC----------------------------------------------
Confidence 458999987664322211 2233444444332
Q ss_pred hcccccCCceEEEEEECce-EEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECCcEEEEEec
Q 043572 186 EEEQHCRGDNVFAVIIGKR-LVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVNGYSLFSCV 251 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~kkk-i~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~~y~lidl~ 251 (997)
++.. ++.|+-.. ..+++-.. .+...+=+..++.+++..|. |..|.++...+=.++.+.
T Consensus 249 ------dgd~-lfaAt~davfrlw~e~q-~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 249 ------DGDV-LFAATCDAVFRLWQENQ-SWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred ------CCCE-EEEecccceeeeehhcc-cceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 1222 34444333 34553332 34444556677889999998 566777777766666664
No 331
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=29.07 E-value=3.7e+02 Score=31.75 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=51.8
Q ss_pred cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc-CcEEEEecCCeEEEeecC
Q 043572 40 CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV-GKVLLLFCDQCLFLTDSL 118 (997)
Q Consensus 40 ~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~-~~lLv~l~d~~l~~~~l~ 118 (997)
-+-.|.||-..|.+.++.-.... .++ .|..+..+.+..|+.|.-+|.. +.+|++-++|.+++|+..
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~--~sk-----------lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFE--VSK-----------LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred CCcceEEeeccCceEEecchhhH--HHH-----------hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence 35579999999998876554311 111 1222222566789999988764 456777789999999874
Q ss_pred cccccc--ccccccceEEEEee
Q 043572 119 LTQPLK--KLGFLKGISVIAKR 138 (997)
Q Consensus 119 ~l~~~~--~~~~~kg~~~f~~~ 138 (997)
...+.. .-.-.|.=..|+++
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ccccCCCCcccccCCCCeeEEe
Confidence 432221 12233444455554
No 332
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=28.84 E-value=16 Score=27.70 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=26.1
Q ss_pred cCCCcCccccCccCCc--cEEEcCCCeEEEecccccc
Q 043572 938 NDESLCDSCHARLGTK--LFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~--~f~v~p~g~~~H~~C~~~~ 972 (997)
...+.|.+|++.|... .+-.-.|+.++|..|....
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 4567899999999752 3333357899999998864
No 333
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.57 E-value=5.8e+02 Score=28.67 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=64.2
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTST 165 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (997)
++..+.-|.-....+ ..+ -||..+.+|+.....|+.++. ....++++..++.+
T Consensus 146 g~s~~~gIdh~~~~~-~Fa-TcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE------------------------ 199 (433)
T KOG0268|consen 146 GKSVYLGIDHHRKNS-VFA-TCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE------------------------ 199 (433)
T ss_pred ccccccccccccccc-ccc-ccCceeeecccccCCccceeecCCCceeEEecCCCc------------------------
Confidence 555666666666666 666 889999999998877765431 22223333322210
Q ss_pred cchhhhhccCccccCCccchhcccccCCceEEEE-EECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE-EEEEECC
Q 043572 166 GQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAV-IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS-IIVGTVN 243 (997)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~V-a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~-l~vg~~~ 243 (997)
...|+. +..+.|.+|....+ ..++.+.+....-+++|.-+. .+++...
T Consensus 200 ----------------------------TsILas~~sDrsIvLyD~R~~--~Pl~KVi~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 200 ----------------------------TSILASCASDRSIVLYDLRQA--SPLKKVILTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred ----------------------------chheeeeccCCceEEEecccC--CccceeeeeccccceecCccccceeeccc
Confidence 112333 47788899887654 455566666666788888643 5555444
Q ss_pred --cEEEEEec
Q 043572 244 --GYSLFSCV 251 (997)
Q Consensus 244 --~y~lidl~ 251 (997)
.-+++|+.
T Consensus 250 D~nlY~~DmR 259 (433)
T KOG0268|consen 250 DHNLYTYDMR 259 (433)
T ss_pred cccceehhhh
Confidence 44555554
No 334
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=28.06 E-value=1.1e+02 Score=25.03 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=37.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...+...+++++|+..++......+.. .......|..++..+++++|..+|.+.
T Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 41 AAAYYKLGKYEEALEDYEKALELDPDN----AKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355667789999999887754322111 134556677788889999999988764
No 335
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=1.6e+02 Score=35.26 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=43.9
Q ss_pred EEEE-ECceEEEEEEeCCeEEEEEeEecCC-cce-EEEEe--CCEEEEEECC-cEEEEEecCCcceee
Q 043572 197 FAVI-IGKRLVLIELVNGSFVILKEIQCMD-GVK-TMVWL--NDSIIVGTVN-GYSLFSCVTGQSGVI 258 (997)
Q Consensus 197 l~Va-~kkki~i~~~~~~~~~~~kei~~~~-~~~-~l~~~--~~~l~vg~~~-~y~lidl~~g~~~~l 258 (997)
++.+ .+.++.+++.. |+++..++.|+ +++ +++|. |..|.||.++ ...+.|..+|....-
T Consensus 35 iA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred hheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4444 45568898886 78888888776 445 89999 5569999775 699999998765433
No 336
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.74 E-value=31 Score=25.63 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=11.2
Q ss_pred CCCcCccccCccC
Q 043572 939 DESLCDSCHARLG 951 (997)
Q Consensus 939 ~~~~C~vC~k~l~ 951 (997)
+...|++||+++.
T Consensus 7 p~K~C~~C~rpf~ 19 (42)
T PF10013_consen 7 PSKICPVCGRPFT 19 (42)
T ss_pred CCCcCcccCCcch
Confidence 5678999999986
No 337
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=27.57 E-value=7.3e+02 Score=25.99 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=77.9
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEeEecC----CcceEEEEeC-CEEEEEECCc----------EEEEEecCCcceeeec
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKEIQCM----DGVKTMVWLN-DSIIVGTVNG----------YSLFSCVTGQSGVIFT 260 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~kei~~~----~~~~~l~~~~-~~l~vg~~~~----------y~lidl~~g~~~~l~~ 260 (997)
.+.|+....+.++....+....+-+.... ..+..+.+.. +.++++.... .+.++.. ++...+..
T Consensus 53 ~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 53 RLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred EEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 57888889998887666666666554311 1235565553 4588886532 4445544 44444432
Q ss_pred CCCCCCCCceEEcCCCCeEEEEeC---CeEEEEcc--CCC-cccc-c-cccC---CCCCeEEEeCc---EEEEEECCeEE
Q 043572 261 LPDVSCPPMLKLLSKEQKVLLLVD---NVGVFVDA--HGQ-PVGG-S-LVFR---KSPDAVGELSM---YVVVLRGGKME 326 (997)
Q Consensus 261 ~~~~~~~p~i~~~~~~~e~Ll~~~---~~g~fv~~--~G~-~~r~-~-i~w~---~~P~~i~~~~P---Yll~~~~~~ie 326 (997)
- -..|.-..++.++..|...+ +...-++. .|. .... . +..+ ..|..++++.- |+..+..+.|.
T Consensus 132 ~---~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 132 G---LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp E---ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred C---cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 1 11233333433444444322 23333333 333 2211 1 2222 24888998743 44444688999
Q ss_pred EEecCCCceEEEEecCC
Q 043572 327 LYHKKSGICVQAVTFGG 343 (997)
Q Consensus 327 I~~~~~~~lvQ~i~~~~ 343 (997)
+++.. |.++..|.++.
T Consensus 209 ~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPV 224 (246)
T ss_dssp EEETT-SCEEEEEE-SS
T ss_pred EECCC-ccEEEEEcCCC
Confidence 99987 99999999984
No 338
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=27.47 E-value=1.3e+03 Score=28.67 Aligned_cols=159 Identities=9% Similarity=0.009 Sum_probs=85.4
Q ss_pred EEEEEeEecCCcceEEEEeC--CEEEEEECC-cEEEEEecCCcceeeecCCC-C----CCCCceEEcC--CCCeEE--EE
Q 043572 215 FVILKEIQCMDGVKTMVWLN--DSIIVGTVN-GYSLFSCVTGQSGVIFTLPD-V----SCPPMLKLLS--KEQKVL--LL 282 (997)
Q Consensus 215 ~~~~kei~~~~~~~~l~~~~--~~l~vg~~~-~y~lidl~~g~~~~l~~~~~-~----~~~p~i~~~~--~~~e~L--l~ 282 (997)
-....++.+.+.+..+.+.+ ..|+|...+ ...++|.+.+.....-.... . ...-.|..+. .+.+|+ +|
T Consensus 120 ~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~ 199 (670)
T PF10395_consen 120 TTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVS 199 (670)
T ss_pred ccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEE
Confidence 33445677888888888883 346666665 56777773222111101110 0 1111222222 122433 34
Q ss_pred e-CCeEEE-----EccCCCccccccc---cC---CCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCC--
Q 043572 283 V-DNVGVF-----VDAHGQPVGGSLV---FR---KSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQ-- 348 (997)
Q Consensus 283 ~-~~~g~f-----v~~~G~~~r~~i~---w~---~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~-- 348 (997)
. ++-.+- ++.++.+.- .+. -+ ..-..++|.+.-+..+..+.|++|++.+.+++++|.++....+.
T Consensus 200 ~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~ 278 (670)
T PF10395_consen 200 QLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESD 278 (670)
T ss_pred EcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccc
Confidence 4 221111 211222211 111 11 12346788888888889999999999999999999998533221
Q ss_pred ceecccccCCCcEEEEEcCCeEEEEee
Q 043572 349 CIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 349 ~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
..++..+.. .+.++++..+.|+.+..
T Consensus 279 ~~vSl~~~s-~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 279 DLVSLKPPS-PNRVLLSVNNKIYLLDL 304 (670)
T ss_pred cceEeecCC-CCeEEEEcCCEEEEEee
Confidence 223322222 25678889999998653
No 339
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=27.11 E-value=95 Score=22.97 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.6
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
+..|+..|...|++++|.+++.+....
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457899999999999999999998753
No 340
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=27.11 E-value=1.5e+03 Score=29.44 Aligned_cols=311 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred cCCCCCCCccceeeeeEEeecCC------eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-----cCC
Q 043572 20 LSHYSRSSPIRSLSISPISDCQV------LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-----VAD 88 (997)
Q Consensus 20 ~~~~~~~~~~~~~~I~ci~~~~~------~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 88 (997)
++...-+++..+.-|..+..-+. +|.+|-.+|.++.+.++.-.. +..-.+++++...+ ++-
T Consensus 626 ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G--------~l~d~rtR~lG~~pvkLf~~~~ 697 (1205)
T KOG1898|consen 626 LSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTG--------QLLDIRTRFLGLRPVKLFPISM 697 (1205)
T ss_pred ccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEeccccc--------ceeeeheeeeccccceEEEEee
Q ss_pred CcceEEEeecccCcEEEEecCCeEEEeecCc-----cccccccccccceEEEEeecccCCccccccccccccccccccCC
Q 043572 89 SPVESIFVLDDVGKVLLLFCDQCLFLTDSLL-----TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANAST 163 (997)
Q Consensus 89 ~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~-----l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (997)
+...-+..+.+...++= -.++.++..++.. -+|...-....|+..+..+..+
T Consensus 698 ~~~s~vL~lSsr~wl~y-~~~~~~h~t~Isy~~l~~as~~~S~qcpeGiv~i~~n~l~---------------------- 754 (1205)
T KOG1898|consen 698 RGQSDVLALSSRPWLLY-TYQQEFHLTPISYSTLEHASPFCSEQCPEGIVAISKNTLR---------------------- 754 (1205)
T ss_pred cCcceeEEecCChhhhh-hhcceeeeecccccchhccccccccCCCcchhhhhhhhhh----------------------
Q ss_pred cccchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC------------------C
Q 043572 164 STGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM------------------D 225 (997)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~------------------~ 225 (997)
-+...+-|-..|+++++.. -...++++.-..+++++--++......++...- +
T Consensus 755 ---i~~~~~~g~~~n~~~~~l~------~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g 825 (1205)
T KOG1898|consen 755 ---IIALDKLGKVLNVDGFPLA------YTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMG 825 (1205)
T ss_pred ---eeeehhhcccccccccccc------cCcceEEEecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhc
Q ss_pred cceEEEEeCCE---EEEEECC-------cEEEEEecCCcceeeecCCCCCCCCceEEc---CCCCe-EEEEeCCeEEEEc
Q 043572 226 GVKTMVWLNDS---IIVGTVN-------GYSLFSCVTGQSGVIFTLPDVSCPPMLKLL---SKEQK-VLLLVDNVGVFVD 291 (997)
Q Consensus 226 ~~~~l~~~~~~---l~vg~~~-------~y~lidl~~g~~~~l~~~~~~~~~p~i~~~---~~~~e-~Ll~~~~~g~fv~ 291 (997)
.=-.+...++. -.++..+ ....+|..+|..+-+++.+.....-.++.. ..+.. |+.+....+.-.+
T Consensus 826 ~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~ 905 (1205)
T KOG1898|consen 826 GEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLD 905 (1205)
T ss_pred cchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeecccccc
Q ss_pred cC---------------CCcccc--ccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCCceeccc
Q 043572 292 AH---------------GQPVGG--SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDE 354 (997)
Q Consensus 292 ~~---------------G~~~r~--~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~ 354 (997)
.. |+..+- ...|+..|.++.=..-|+++-..+.+.+|.+-...+...-.++.. +..|+..
T Consensus 906 ~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~--p~~Is~i- 982 (1205)
T KOG1898|consen 906 SKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFI--PNRISSI- 982 (1205)
T ss_pred ccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccC--ceEEEEE-
Q ss_pred ccCCCcEEEEEcCCeEEEEe
Q 043572 355 ECGAGKLLVVATPTKVICYQ 374 (997)
Q Consensus 355 ~~~~g~~~~v~s~~~V~~l~ 374 (997)
.+.+..++|+....-..+.
T Consensus 983 -qt~~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 983 -QTYGARIVVGDIQESVHFV 1001 (1205)
T ss_pred -eecceEEEEeeccceEEEE
No 341
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.89 E-value=9.8e+02 Score=27.22 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=63.6
Q ss_pred eEEEEeCC---E-EEEEECC-cEEEEEecCCcceee-ecCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccC--CCcccc
Q 043572 228 KTMVWLND---S-IIVGTVN-GYSLFSCVTGQSGVI-FTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAH--GQPVGG 299 (997)
Q Consensus 228 ~~l~~~~~---~-l~vg~~~-~y~lidl~~g~~~~l-~~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~--G~~~r~ 299 (997)
+.+.|..+ . +.-+++. ...++|...++.+.+ |++...++ -.+...+ .+.|+++.|.+|-.--.+ |...-+
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i-s~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI-SSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcc-eeeeecC-CCcEEEEecccchhheecccCceeec
Confidence 56666654 2 3334443 566788875544333 44432111 1122234 447777766554443222 222222
Q ss_pred -cc-ccCCCCCeEEEeC--cEEEEE-ECCeEEEEecCCCceEEEEecCC
Q 043572 300 -SL-VFRKSPDAVGELS--MYVVVL-RGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 300 -~i-~w~~~P~~i~~~~--PYll~~-~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
.+ -..+.+.+|.++. ||+... .+..+.||.+.+..++..+-+..
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 22 3467788888885 477755 47899999999977766655544
No 342
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.84 E-value=21 Score=27.03 Aligned_cols=15 Identities=13% Similarity=0.550 Sum_probs=12.3
Q ss_pred EcCCCcCccccCccC
Q 043572 937 INDESLCDSCHARLG 951 (997)
Q Consensus 937 I~~~~~C~vC~k~l~ 951 (997)
-.++..|++|++|+.
T Consensus 9 ~lp~KICpvCqRPFs 23 (54)
T COG4338 9 TLPDKICPVCQRPFS 23 (54)
T ss_pred ccchhhhhhhcCchH
Confidence 347789999999985
No 343
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.78 E-value=7.6e+02 Score=28.53 Aligned_cols=134 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhcc----
Q 043572 594 YASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADI---- 669 (997)
Q Consensus 594 y~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~---- 669 (997)
|+..|+.++||+++.+|. .++...+..|.+.
T Consensus 534 ~e~~~~ldeald~f~klh---------------------------------------------~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLH---------------------------------------------AILLNNAEVLVQIANIY 568 (840)
T ss_pred HHHhcCHHHHHHHHHHHH---------------------------------------------HHHHhhHHHHHHHHHHH
Q ss_pred ----CchhhhhhcccccccCCCCh--hHHHHHhhcc-----ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 043572 670 ----NAVLAVKVLTSEKRINQLSP--DKVIAAIDSK-----KVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAF 738 (997)
Q Consensus 670 ----~p~~~l~if~~~~~~~~l~~--~~Vl~~L~~~-----~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l 738 (997)
||..|+++++. ..++-| ..|+..|... +...+.+|--.-..-..+. -+....|+..||+.
T Consensus 569 e~led~aqaie~~~q---~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-ie~iewl~ayyidt----- 639 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQ---ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-IETIEWLAAYYIDT----- 639 (840)
T ss_pred HHhhCHHHHHHHHHH---hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-hHHHHHHHHHHHhh-----
Q ss_pred HhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCCCCChHHHHhhccCCCchH-HHHHHHHhhcchHHHHHH
Q 043572 739 EEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWL-EKAILYRKLGQETLVLQI 817 (997)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~-e~~~Ll~klg~h~eAL~i 817 (997)
..-+|-+.|++.-....|...- |. -.+-.+.|.|.|++|+++
T Consensus 640 -----------------------------qf~ekai~y~ekaaliqp~~~k--------wqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 640 -----------------------------QFSEKAINYFEKAALIQPNQSK--------WQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred -----------------------------HHHHHHHHHHHHHHhcCccHHH--------HHHHHHHHHHhcccHHHHHHH
Q ss_pred H
Q 043572 818 L 818 (997)
Q Consensus 818 l 818 (997)
|
T Consensus 683 y 683 (840)
T KOG2003|consen 683 Y 683 (840)
T ss_pred H
No 344
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.64 E-value=1.4e+02 Score=34.00 Aligned_cols=58 Identities=19% Similarity=0.064 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+..+...++..|+|++|+.+++..-...+... .++...|..++..++|++|+..+.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999999999999977643222111 23445667788889999999988763
No 345
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=26.61 E-value=9.1e+02 Score=31.81 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=49.0
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
+..+.-|++||++-.+...+-....+- . .+..... ....++.++..++..+.+.|+-.||.+.++.+...
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s-~-----rS~ltys----~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGS-A-----RSELTYS----PEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCcce-e-----eeeEEEe----ccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 356777999999999988765432110 0 0111111 24668999999999998888777999999998774
No 346
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=26.56 E-value=70 Score=24.59 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=22.4
Q ss_pred cCccccCccCCccEE-EcCCCeEEEecccccc
Q 043572 942 LCDSCHARLGTKLFA-MYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~-v~p~g~~~H~~C~~~~ 972 (997)
.|.+|++.-.....+ ---|+..||..|....
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCC
Confidence 489999944443333 3468999999999865
No 347
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=26.50 E-value=2e+02 Score=32.35 Aligned_cols=73 Identities=21% Similarity=0.165 Sum_probs=49.3
Q ss_pred eeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCc-EEEEecC
Q 043572 33 SISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGK-VLLLFCD 109 (997)
Q Consensus 33 ~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~-lLv~l~d 109 (997)
-|+-|...++ .|.-|..+|+|-.+.+...... +++...+ ..+.||+.|.--|...- ++++-.|
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----------~pVA~fk---~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----------QPVATFK---YHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----------CcceeEE---eccCCeeEEEeccccCceEEeccCC
Confidence 4455553332 5899999999999988765531 2332222 47889999998876553 4444457
Q ss_pred CeEEEeecCc
Q 043572 110 QCLFLTDSLL 119 (997)
Q Consensus 110 ~~l~~~~l~~ 119 (997)
.++.+|+|.-
T Consensus 370 ~QitiWDlsv 379 (440)
T KOG0302|consen 370 NQITIWDLSV 379 (440)
T ss_pred CcEEEEEeec
Confidence 7999999853
No 348
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.46 E-value=1.4e+02 Score=33.89 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
....++..|++++|+..++..-.-.+. ....+...|..++..|+|++|...|.+.-.++|.
T Consensus 42 ~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 42 RAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 345678899999999999776432221 1234556788889999999999999763234443
No 349
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=26.34 E-value=9.7e+02 Score=26.97 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=52.6
Q ss_pred eeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.+-|++.+ .+.|+-|..|.++..+.+....+ +..+.. .+.+|.++..=|-...+.-+--|+
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--------------V~~l~G---H~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--------------VHVLSG---HTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccce--------------EEEecC---CCCcceeEEeecCCCceEEecCCc
Confidence 67788888 77899999999988888875432 222221 577999998888777677766699
Q ss_pred eEEEeecCc
Q 043572 111 CLFLTDSLL 119 (997)
Q Consensus 111 ~l~~~~l~~ 119 (997)
+|++|++-.
T Consensus 300 tvrlWDl~a 308 (460)
T KOG0285|consen 300 TVRLWDLRA 308 (460)
T ss_pred eEEEeeecc
Confidence 999999865
No 350
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.03 E-value=20 Score=37.80 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc-c---CcccCCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR-Q---GESTSITGRDF 983 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~-~---~~~~~~t~~~f 983 (997)
.+.+|..|-.... .++..||||+|.-+|+-. . ...-||-|+.+
T Consensus 214 ~d~kC~lC~e~~~--~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak 260 (271)
T COG5574 214 ADYKCFLCLEEPE--VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAK 260 (271)
T ss_pred cccceeeeecccC--CcccccccchhhHHHHHHHHHhhccccCchhhhh
Confidence 4789999986665 477899999999999887 1 12228866555
No 351
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=25.99 E-value=1.6e+02 Score=33.56 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhC-----CCCcchhhhHHHHHHHHH
Q 043572 836 GRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETL-----SPDMPLQLASDTILRMLR 900 (997)
Q Consensus 836 ~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~l-----P~~~~i~~l~~fL~~~l~ 900 (997)
.++.||..||..+++. ..|+|.+|++.- +.++|++.+..|+.++|-
T Consensus 255 d~~~L~HSllS~alNi-------------------gLL~PleVi~Aa~~Ay~~g~ipLN~VEGFvRQiiG 305 (505)
T COG3046 255 DDPHLWHSLLSFALNI-------------------GLLTPLEVIRAALKAYREGDIPLNSVEGFVRQIIG 305 (505)
T ss_pred CCchhHHHHHHHHhhc-------------------cCCCHHHHHHHHHHhhccCCCchHHHHHHHHHHhh
Confidence 3567999999888764 457777776654 577899999999988873
No 352
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=25.82 E-value=26 Score=27.07 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=23.6
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
..|.+|.+|+.....+..|.|-+---.|++-.
T Consensus 2 ~iCvvCK~Pi~~al~v~T~~Gpvh~g~C~~y~ 33 (53)
T PHA02610 2 KICVVCKQPIEKALVVETEKGPVHPGPCYNYV 33 (53)
T ss_pred ceeeeeCCchhhceEEecCCCCCCChhHHHHH
Confidence 57999999997655666788875555777654
No 353
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=25.62 E-value=27 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=21.3
Q ss_pred CccccCccCCccEEEcCCCeEEEecccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
|++|..-+...+ .-+|||.|-..|+.+.
T Consensus 1 CpiC~~~~~~Pv--~l~CGH~FC~~Cl~~~ 28 (42)
T PF15227_consen 1 CPICLDLFKDPV--SLPCGHSFCRSCLERL 28 (42)
T ss_dssp ETTTTSB-SSEE--E-SSSSEEEHHHHHHH
T ss_pred CCccchhhCCcc--ccCCcCHHHHHHHHHH
Confidence 788987777533 3699999999999876
No 354
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=25.58 E-value=1.1e+02 Score=28.55 Aligned_cols=53 Identities=15% Similarity=-0.098 Sum_probs=37.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..+...|++++|+..++......+.. ...+...|..+...+++++|+..|.+.
T Consensus 59 ~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 59 ACCQMLKEYEEAIDAYALAAALDPDD----PRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55678899999999887764322211 234455777888889999999998763
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=25.47 E-value=8.1e+02 Score=31.42 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=44.7
Q ss_pred ceEEEEEEeC-CeEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCC
Q 043572 203 KRLVLIELVN-GSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTG 253 (997)
Q Consensus 203 kki~i~~~~~-~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g 253 (997)
-+|.+|++.. ++.+.+.|..+.+.|.++..+++.+..|......+++..++
T Consensus 807 GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 807 GRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTE 858 (1096)
T ss_pred ceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEcccc
Confidence 4788999987 68888888888899999999999999999999999998655
No 356
>PRK00807 50S ribosomal protein L24e; Validated
Probab=25.20 E-value=69 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=20.6
Q ss_pred CcCccccCccCC--ccEEEcCCCeEEEecc
Q 043572 941 SLCDSCHARLGT--KLFAMYPDDTIVCYKC 968 (997)
Q Consensus 941 ~~C~vC~k~l~~--~~f~v~p~g~~~H~~C 968 (997)
..|+.||.+|.+ ....|--+|.+++.-|
T Consensus 2 ~~C~fcG~~I~pg~G~~~vr~Dgkv~~Fcs 31 (52)
T PRK00807 2 RTCSFCGKEIEPGTGKMYVKKDGTILYFCS 31 (52)
T ss_pred cccCCCCCeEcCCCCeEEEEeCCcEEEEeC
Confidence 479999999974 3455677888777644
No 357
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=25.10 E-value=9.4 Score=41.30 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=34.2
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC--cccCCCCCCCCCcc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--ESTSITGRDFKKDV 987 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--~~~~~t~~~f~~~~ 987 (997)
++.--+|.+|+.-+.- =++.||||.|..-|.+.+. ..-||||..=..++
T Consensus 20 lD~lLRC~IC~eyf~i--p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNI--PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hHHHHHHhHHHHHhcC--ceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 4455689999876653 3468999999999999862 33488765443333
No 358
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.77 E-value=4.8e+02 Score=24.32 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCCcCccccCccCC---ccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGT---KLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~---~~f~v~p~g~~~H~~C~~~ 971 (997)
.++.|+.|++++|. +.....-|++-|...|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 67899999999763 4455555677777777664
No 359
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=24.75 E-value=2e+02 Score=32.07 Aligned_cols=86 Identities=5% Similarity=-0.005 Sum_probs=54.9
Q ss_pred ccccccCCCCCC--CccceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcce
Q 043572 15 LSQFDLSHYSRS--SPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVE 92 (997)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 92 (997)
.-+||+.+..+. |.-++.-|.|.=.....||-+|.+|.+..+......- ...+. =..-+|.
T Consensus 310 i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l-------------~~~y~----GH~~~Il 372 (399)
T KOG0296|consen 310 IAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQL-------------KFTYT----GHQMGIL 372 (399)
T ss_pred EEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccce-------------EEEEe----cCchhee
Confidence 457887665443 5556654444322246799999999998887764431 00111 1456899
Q ss_pred EEEeecccCcEEEEec-CCeEEEeecC
Q 043572 93 SIFVLDDVGKVLLLFC-DQCLFLTDSL 118 (997)
Q Consensus 93 qi~vl~~~~~lLv~l~-d~~l~~~~l~ 118 (997)
-+.+.|+.+ ++|+-+ |++..+|..+
T Consensus 373 ~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 999999888 555466 5688888754
No 360
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=24.70 E-value=9.9e+02 Score=26.55 Aligned_cols=92 Identities=12% Similarity=0.285 Sum_probs=49.4
Q ss_pred EEEEEEeCCeEEE-EEeEecCC---cceEEEEe--CCEEEEEECCcEEEEEe-cCCcceeeecCC---CCCCCCceEEc-
Q 043572 205 LVLIELVNGSFVI-LKEIQCMD---GVKTMVWL--NDSIIVGTVNGYSLFSC-VTGQSGVIFTLP---DVSCPPMLKLL- 273 (997)
Q Consensus 205 i~i~~~~~~~~~~-~kei~~~~---~~~~l~~~--~~~l~vg~~~~y~lidl-~~g~~~~l~~~~---~~~~~p~i~~~- 273 (997)
|-++....++.+- .+-+.--+ ...++.|. |..|+.|+++-..++|+ +.|.-.+..+.- ..++.-+|..+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 7777666554332 12222222 33677777 45699999999999999 567655554433 22333444433
Q ss_pred --CCCC-eEEEE-e-CCeEEEEccCCCc
Q 043572 274 --SKEQ-KVLLL-V-DNVGVFVDAHGQP 296 (997)
Q Consensus 274 --~~~~-e~Ll~-~-~~~g~fv~~~G~~ 296 (997)
|.+. .+.+. + +.+|++-+..+.|
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~p 242 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRP 242 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCc
Confidence 2222 22232 2 3466665544444
No 361
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=24.47 E-value=1.9e+02 Score=27.83 Aligned_cols=59 Identities=19% Similarity=0.043 Sum_probs=40.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGE-MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~-~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.+|.+.+..|++++|++.++....... ......=.++.+.-..++.+++..+|+++..+
T Consensus 6 ~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~ 65 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARK 65 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 468889999999999999988653321 11222334555444556777899999987664
No 362
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.36 E-value=37 Score=35.56 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 413 SFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 413 ~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..|..-||+.|..+|+|++|+..|.+.
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 467888999999999999999999874
No 363
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=24.22 E-value=1.1e+03 Score=26.80 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=65.8
Q ss_pred CCEEEEEECCcEEEEEecCCcce-----eeecCCC--CCCCCc----eEEcCCCCeEEEEeC-----------CeEEEEc
Q 043572 234 NDSIIVGTVNGYSLFSCVTGQSG-----VIFTLPD--VSCPPM----LKLLSKEQKVLLLVD-----------NVGVFVD 291 (997)
Q Consensus 234 ~~~l~vg~~~~y~lidl~~g~~~-----~l~~~~~--~~~~p~----i~~~~~~~e~Ll~~~-----------~~g~fv~ 291 (997)
|..+++.+......+|+.+.... .++.... .+.+|- +..-++++.+.+... +..-.+|
T Consensus 206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 45588888889999997544332 2332221 122331 333334445555321 3455566
Q ss_pred cCCCccccccccCCCCCeEEEeC---cEEEEEE--CCeEEEEecCCCceEEEE-ecCC
Q 043572 292 AHGQPVGGSLVFRKSPDAVGELS---MYVVVLR--GGKMELYHKKSGICVQAV-TFGG 343 (997)
Q Consensus 292 ~~G~~~r~~i~w~~~P~~i~~~~---PYll~~~--~~~ieI~~~~~~~lvQ~i-~~~~ 343 (997)
.........|.-...|.++++.. |++++.. .+.|.|+++.++..+.+| .+..
T Consensus 286 ~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~ 343 (352)
T TIGR02658 286 AKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGR 343 (352)
T ss_pred CCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCC
Confidence 53222223455567788888874 6777765 477999999999999998 6654
No 364
>PRK03922 hypothetical protein; Provisional
Probab=23.82 E-value=66 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=20.6
Q ss_pred ccCcEEEc-CCCcCccccCccCCccEEE
Q 043572 931 RSRHVQIN-DESLCDSCHARLGTKLFAM 957 (997)
Q Consensus 931 ~~~~v~I~-~~~~C~vC~k~l~~~~f~v 957 (997)
.-.+|.|+ ..+.|+.||.++.. +|++
T Consensus 39 ~l~yVeievG~~~cP~cge~~~~-afvv 65 (113)
T PRK03922 39 DLDYVEVEVGLTICPKCGEPFDS-AFVV 65 (113)
T ss_pred cCCeEEEecCcccCCCCCCcCCc-EEEE
Confidence 56889998 67999999999985 4443
No 365
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=23.48 E-value=2e+02 Score=28.48 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQP 444 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp 444 (997)
-.|.+.|++++|..+.+..-.-+. ..-..... .|-.+-..++|++|++.|.....++|
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp---~~~~y~~g-LG~~~Q~~g~~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDA---WSFDYWFR-LGECCQAQKHWGEAIYAYGRAAQIKI 100 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456789999999999877532111 11223333 34445567899999999987544443
No 366
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.47 E-value=32 Score=22.81 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=7.9
Q ss_pred cCccccCccCC
Q 043572 942 LCDSCHARLGT 952 (997)
Q Consensus 942 ~C~vC~k~l~~ 952 (997)
.|+.|++.+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 58888877754
No 367
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=23.47 E-value=4.7e+02 Score=26.64 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=40.2
Q ss_pred eEEEEEEeCCeEEEEEeEec--CCcceEEEEeCCE---EEEEEC-------CcEEEEEecCCcceeeecCCC
Q 043572 204 RLVLIELVNGSFVILKEIQC--MDGVKTMVWLNDS---IIVGTV-------NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 204 ki~i~~~~~~~~~~~kei~~--~~~~~~l~~~~~~---l~vg~~-------~~y~lidl~~g~~~~l~~~~~ 263 (997)
+|.|+....+.+..+.--.. ...|+-+.|.++. +++|.. ...+++++.+|+..+|.+..+
T Consensus 89 kIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 89 KIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred eEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 56666666665544321111 2357889999764 555643 368999999999999999754
No 368
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=23.39 E-value=2.9e+02 Score=31.69 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=54.2
Q ss_pred ceeeeeEEeec--C-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 30 RSLSISPISDC--Q-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~--~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
.+..|.|++.. + .-|.-|+.||++..|.+..-.. ....+.. .+..|.|+.--|..+-+|.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------~lh~~e~----H~dev~~V~WSPh~etvLA- 333 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------PLHTFEG----HEDEVFQVEWSPHNETVLA- 333 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------CceeccC----CCcceEEEEeCCCCCceeE-
Confidence 35799999963 3 3578889999999998875432 1122222 5678999999999988887
Q ss_pred ec--CCeEEEeecCcc
Q 043572 107 FC--DQCLFLTDSLLT 120 (997)
Q Consensus 107 l~--d~~l~~~~l~~l 120 (997)
-+ |+.|.+|++...
T Consensus 334 SSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRI 349 (422)
T ss_pred ecccCCcEEEEecccc
Confidence 44 789999998763
No 369
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=22.48 E-value=2.1e+02 Score=29.86 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=41.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
+...++..|++++|+...+......+.. ......+...|..++..++|++|+..|.+
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4577889999999999997764322111 11234455678889999999999999876
No 370
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.35 E-value=2.2e+02 Score=30.78 Aligned_cols=57 Identities=14% Similarity=-0.019 Sum_probs=40.2
Q ss_pred HHHHH-HhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDL-LRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~L-l~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
....| +..|+|++|+..++..-..-+. ..+....+-..|..++..++|++|+..|.+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~ 205 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFAS 205 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455 6789999999998776432111 112234556788999999999999999875
No 371
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=22.21 E-value=86 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=20.6
Q ss_pred ccCcEEEc-CCCcCccccCccCCccEEE
Q 043572 931 RSRHVQIN-DESLCDSCHARLGTKLFAM 957 (997)
Q Consensus 931 ~~~~v~I~-~~~~C~vC~k~l~~~~f~v 957 (997)
...+|.|+ ..+.|+.|+.++.. +|++
T Consensus 37 ~~~~VeIevG~~~cP~Cge~~~~-a~vv 63 (102)
T PF04475_consen 37 DLDYVEIEVGDTICPKCGEELDS-AFVV 63 (102)
T ss_pred CCCeEEEecCcccCCCCCCccCc-eEEE
Confidence 56888998 67999999999985 4443
No 372
>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....
Probab=22.14 E-value=77 Score=26.75 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=17.3
Q ss_pred CcCccccCccCC--ccEEEcCCCeEEEe
Q 043572 941 SLCDSCHARLGT--KLFAMYPDDTIVCY 966 (997)
Q Consensus 941 ~~C~vC~k~l~~--~~f~v~p~g~~~H~ 966 (997)
..|+.||.+|.+ ...+|-.||.++++
T Consensus 4 ~~C~Fsg~~I~PG~G~~~Vr~DG~v~~F 31 (71)
T PF01246_consen 4 EKCSFSGYKIYPGHGKMYVRNDGKVFYF 31 (71)
T ss_dssp EE-TTT-SEE-SSSSEEEE-TTS-EEEE
T ss_pred EEecccCCccCCCCCeEEEecCCCeEEE
Confidence 579999999955 56778899998886
No 373
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.10 E-value=1.9e+02 Score=31.50 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
+..-|..|+..++|++|+++........+..+. -....|+.++...+|..|.+.+.+.+..-|.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rA----gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~ 76 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRA----GLSLLGYCYYRLQEFALAAECYEQLGQLHPE 76 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 455678999999999999999765433222222 1223566677778999999999886544443
No 374
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=4.7e+02 Score=30.71 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=47.5
Q ss_pred eeeeEEeecCC-eEEE-EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDCQV-LIYI-GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~~~-~l~i-GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
++|..|.+-+| |-|| .++|-++-.+.+.+.....+- . .. |.+ +- -.+|||..|..+.+.. -++ -||
T Consensus 736 ~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-s---aC-QfT-Y~----aHkk~i~~igfL~~lr-~i~-ScD 803 (1034)
T KOG4190|consen 736 EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-S---AC-QFT-YQ----AHKKPIHDIGFLADLR-SIA-SCD 803 (1034)
T ss_pred HHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-c---ee-eeE-hh----hccCcccceeeeeccc-eee-ecc
Confidence 46666665433 4444 477788878877654432110 0 00 111 11 2688999999998766 677 899
Q ss_pred CeEEEeecCc
Q 043572 110 QCLFLTDSLL 119 (997)
Q Consensus 110 ~~l~~~~l~~ 119 (997)
|.+++|+=..
T Consensus 804 ~giHlWDPFi 813 (1034)
T KOG4190|consen 804 GGIHLWDPFI 813 (1034)
T ss_pred Ccceeecccc
Confidence 9999998543
No 375
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=21.80 E-value=1e+02 Score=26.24 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=29.8
Q ss_pred HHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcC
Q 043572 802 AILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLD 850 (997)
Q Consensus 802 ~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~ 850 (997)
++-.-..|++++|+.+|..-+..+..+..|+.....++....-+.-|+.
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~ 61 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVS 61 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 4556778999999999997665555555554332223344444444443
No 376
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=21.79 E-value=7.3e+02 Score=23.92 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred cCCceEEEEEECceEEEEEEeCC------eEEEEEeEecCCcceEEEEe-------CCEEEEEECCcEEEEEecCCccee
Q 043572 191 CRGDNVFAVIIGKRLVLIELVNG------SFVILKEIQCMDGVKTMVWL-------NDSIIVGTVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 191 ~~~~~~l~Va~kkki~i~~~~~~------~~~~~kei~~~~~~~~l~~~-------~~~l~vg~~~~y~lidl~~g~~~~ 257 (997)
+...+..|+....||+|+.-... .-..++.+.+...|++++-- .+.|++|+.+....+|+....-.-
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF 87 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh
Q ss_pred eecCCCCCCCCceEEcCC-CCeEEEEeCCeEEE-EccCCC
Q 043572 258 IFTLPDVSCPPMLKLLSK-EQKVLLLVDNVGVF-VDAHGQ 295 (997)
Q Consensus 258 l~~~~~~~~~p~i~~~~~-~~e~Ll~~~~~g~f-v~~~G~ 295 (997)
-=..++.-..-.+-.+.. .+.++++-++..+. +|.+|+
T Consensus 88 yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 88 YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
No 377
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=21.60 E-value=62 Score=41.61 Aligned_cols=57 Identities=16% Similarity=0.343 Sum_probs=39.1
Q ss_pred EEEcCCCcCccccCccCC-ccEEEc--CCCeEEEecccccc----------------Ccc----cCC-CCCCCCCccccC
Q 043572 935 VQINDESLCDSCHARLGT-KLFAMY--PDDTIVCYKCYRRQ----------------GES----TSI-TGRDFKKDVLIK 990 (997)
Q Consensus 935 v~I~~~~~C~vC~k~l~~-~~f~v~--p~g~~~H~~C~~~~----------------~~~----~~~-t~~~f~~~~~~~ 990 (997)
+-++++..|.+|.+-=.. +.+.|| -|+..||+.|.-.. +.. -|| +|..|+.+- .
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~--d 291 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTD--D 291 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceecc--C
Confidence 668899999999876543 344444 57889998887632 111 188 999998874 3
Q ss_pred CCc
Q 043572 991 PGW 993 (997)
Q Consensus 991 ~~~ 993 (997)
|+|
T Consensus 292 grw 294 (1051)
T KOG0955|consen 292 GRW 294 (1051)
T ss_pred Cce
Confidence 444
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=21.56 E-value=1.3e+02 Score=18.67 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 416 HAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 416 ~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+...|..++..++|++|...|.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345677788889999999888763
No 379
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=21.44 E-value=72 Score=25.92 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHhcCCCCccc
Q 043572 415 VHAQIGFLLLFDLHFEEAVDHFLHSETMQPSE 446 (997)
Q Consensus 415 i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~~ 446 (997)
+....|..++..++|++|+.+|.+.=.+||..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~ 36 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN 36 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 45668888999999999999998742245443
No 380
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=21.06 E-value=2.7e+02 Score=29.88 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=63.5
Q ss_pred ccceeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE
Q 043572 28 PIRSLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL 105 (997)
Q Consensus 28 ~~~~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv 105 (997)
+..+.+|+.+-+ .++.|+-|-++|.|-.|........ ++..+ ...+.|+.|..-++.-..+-
T Consensus 144 ~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~----------v~s~~------~h~~~Ind~q~s~d~T~FiT 207 (327)
T KOG0643|consen 144 PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL----------VDSDE------EHSSKINDLQFSRDRTYFIT 207 (327)
T ss_pred cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee----------eechh------hhccccccccccCCcceEEe
Confidence 345567777653 3678999999999999988754311 11111 24558999999999986666
Q ss_pred EecCCeEEEeecCccccccccccccceEEEEee
Q 043572 106 LFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKR 138 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~ 138 (997)
.--|.+-.+++...|+-+.+-..-+.|+.-++.
T Consensus 208 ~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 208 GSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred cccCccceeeeccceeeEEEeeecccccceecc
Confidence 455889999999998765433333344444433
No 381
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=20.95 E-value=2.9e+02 Score=20.67 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=22.5
Q ss_pred CcceEEEEeCCEEEEE-ECCcEEEEEecC
Q 043572 225 DGVKTMVWLNDSIIVG-TVNGYSLFSCVT 252 (997)
Q Consensus 225 ~~~~~l~~~~~~l~vg-~~~~y~lidl~~ 252 (997)
+.+..+...|+.++|+ ...+..++|+.+
T Consensus 2 G~a~~v~v~g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 2 GDARDVAVSGNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred ceEEEEEEECCEEEEEeCCCCEEEEECCC
Confidence 3457788889999999 447999999964
No 382
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=20.90 E-value=89 Score=23.16 Aligned_cols=25 Identities=28% Similarity=0.809 Sum_probs=17.1
Q ss_pred CcCccccCccCCccEEEcCC----CeEEEecc
Q 043572 941 SLCDSCHARLGTKLFAMYPD----DTIVCYKC 968 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~----g~~~H~~C 968 (997)
..|++|+- ...|.+|++ |+-+...|
T Consensus 4 ~pCP~CGG---~DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 4 GPCPICGG---KDRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp E--TTTT----TTTEEEETT----S-EEETTT
T ss_pred CCCCCCcC---ccccccCcCcccCCCEECCCC
Confidence 46999974 456999999 88888888
No 383
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=20.87 E-value=2.1e+02 Score=28.20 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..+...|++++|+..++..-...+.+. ....++...|..+...+++++|+..+.+.
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345578999999999877642211111 12246667888899999999999998763
No 384
>PRK00420 hypothetical protein; Validated
Probab=20.83 E-value=67 Score=29.72 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.7
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
+..|++||-++. .+.+|.++...|....
T Consensus 23 ~~~CP~Cg~pLf-----~lk~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 23 SKHCPVCGLPLF-----ELKDGEVVCPVHGKVY 50 (112)
T ss_pred cCCCCCCCCcce-----ecCCCceECCCCCCee
Confidence 378999995554 4677888888887754
No 385
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=20.82 E-value=75 Score=37.75 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=28.5
Q ss_pred ccCcEEEcC----CCcCccccCccCC------cc----EEEcCC-CeEEEecccccc
Q 043572 931 RSRHVQIND----ESLCDSCHARLGT------KL----FAMYPD-DTIVCYKCYRRQ 972 (997)
Q Consensus 931 ~~~~v~I~~----~~~C~vC~k~l~~------~~----f~v~p~-g~~~H~~C~~~~ 972 (997)
+..++.|-. ...|++|+.++.. .. =+|+-. |.+||..|+...
T Consensus 500 ~~k~~~Vp~d~e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 500 RSKYELVPADSERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred hccceecccCcccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 455666643 3689999999863 11 124444 999999999753
No 386
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.78 E-value=49 Score=26.34 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=13.6
Q ss_pred EcCCCcCccccCccCC
Q 043572 937 INDESLCDSCHARLGT 952 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~ 952 (997)
|.+.+.|.|||++|..
T Consensus 5 v~PH~HC~VCg~aIp~ 20 (64)
T COG4068 5 VVPHRHCVVCGKAIPP 20 (64)
T ss_pred CCCCccccccCCcCCC
Confidence 5678999999999864
No 387
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=20.64 E-value=32 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.518 Sum_probs=20.9
Q ss_pred cCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
.|++||+++|.-.=.-.-+| .+.-.|+++.
T Consensus 1 ~C~iCg~kigl~~~~k~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDG-YICKDCLKKL 30 (51)
T ss_pred CCCccccccccccceeccCc-cchHHHHHHh
Confidence 59999999986221234577 5778888764
No 388
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=20.40 E-value=2.1e+02 Score=35.10 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=47.5
Q ss_pred HHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhc---CCchHHHHHH
Q 043572 786 EDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEI---GRPDAYMQLL 845 (997)
Q Consensus 786 ~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~---~~~~l~~~Ll 845 (997)
..++.+++.-.++.+.++.|..+|+|.+|=.|+...++....+.-||... .++.+|....
T Consensus 415 ksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 415 KSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHH
Confidence 45666777777888999999999999999999888888777889999875 3566666554
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=20.26 E-value=2e+02 Score=22.03 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=29.2
Q ss_pred EEEEEeEecCCcceEEEEeC--CEEEEEECCc-EEEEEecCCc
Q 043572 215 FVILKEIQCMDGVKTMVWLN--DSIIVGTVNG-YSLFSCVTGQ 254 (997)
Q Consensus 215 ~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~-y~lidl~~g~ 254 (997)
|..+.|-.++..++.++|+. +.|.+|+.++ ..+..+ +++
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 56667777888999999995 5699997764 666766 343
No 390
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=20.16 E-value=3.1e+02 Score=32.43 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=52.3
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCC-CCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATT-LHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|-|++. .+..+|=|+-||.+..+.+..+..+. +..+ ..-..-+.+ ....|--+..-+..++||.|-+
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp----~vl~~~l~G----htdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP----SVLSGTLLG----HTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc----chhccceec----cccceeeeeecccccceeeecC
Confidence 35666664 47789999999999999887443221 1111 000111222 2335666777777888888778
Q ss_pred CCeEEEeecCcccc
Q 043572 109 DQCLFLTDSLLTQP 122 (997)
Q Consensus 109 d~~l~~~~l~~l~~ 122 (997)
||+|+.|.-.+-+|
T Consensus 417 DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 417 DGTVRLWEPTEESP 430 (577)
T ss_pred CceEEeeccCCcCc
Confidence 99999997655444
No 391
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.07 E-value=1.6e+03 Score=27.85 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=54.4
Q ss_pred eeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 32 LSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 32 ~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
+-+.|+..+.| .+.-|++|-++.++.+..... ..-|.+ .+.||.-+.+-|. ++-|++.+
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-------------VRiF~G----H~~~V~al~~Sp~-Gr~LaSg~e 597 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-------------VRIFTG----HKGPVTALAFSPC-GRYLASGDE 597 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcE-------------EEEecC----CCCceEEEEEcCC-CceEeeccc
Confidence 57888888765 577788899998888876542 122333 6889999999884 55777444
Q ss_pred CCeEEEeecCcccccc
Q 043572 109 DQCLFLTDSLLTQPLK 124 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~ 124 (997)
|+.|.+|++..-.++.
T Consensus 598 d~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVK 613 (707)
T ss_pred CCcEEEEEcCCCcchh
Confidence 6799999998865543
No 392
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=20.02 E-value=15 Score=39.24 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=29.2
Q ss_pred CCCcCccccCccCCcc-EEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKL-FAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~-f~v~p~g~~~H~~C~~~~ 972 (997)
+..-|.+|---+..+. |.+.+|-|.+|.+|+.++
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence 5578999987776655 999999999999999887
Done!