Query 043572
Match_columns 997
No_of_seqs 266 out of 1114
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 10:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvg_A Clathrin heavy chain 1; 99.4 4.4E-15 1.5E-19 163.9 -3.6 304 522-907 99-413 (624)
2 1xi4_A Clathrin heavy chain; a 99.3 1E-10 3.5E-15 146.0 25.5 305 522-907 1150-1464(1630)
3 1b89_A Protein (clathrin heavy 99.2 2.8E-10 9.6E-15 128.7 21.0 374 382-909 9-393 (449)
4 1xi4_A Clathrin heavy chain; a 99.0 1E-07 3.5E-12 119.4 29.2 291 543-905 1314-1609(1630)
5 3lvg_A Clathrin heavy chain 1; 98.5 5.8E-08 2E-12 107.9 5.3 291 543-905 263-558 (624)
6 3mkq_A Coatomer beta'-subunit; 98.2 0.02 7E-07 70.8 45.2 151 32-253 141-303 (814)
7 4aez_A CDC20, WD repeat-contai 98.0 0.003 1E-07 71.4 30.5 237 33-343 95-347 (401)
8 3zwl_B Eukaryotic translation 97.9 0.0094 3.2E-07 65.4 30.7 239 31-342 32-314 (369)
9 1b89_A Protein (clathrin heavy 97.9 0.00068 2.3E-08 76.7 21.1 202 544-811 242-448 (449)
10 3mmy_A MRNA export factor; mRN 97.8 0.003 1E-07 69.4 24.9 244 30-341 38-313 (368)
11 1sq9_A Antiviral protein SKI8; 97.8 0.0037 1.3E-07 69.9 25.9 251 30-340 15-330 (397)
12 3mkq_A Coatomer beta'-subunit; 97.8 0.0084 2.9E-07 74.3 31.5 241 31-343 13-270 (814)
13 1gxr_A ESG1, transducin-like e 97.7 0.022 7.4E-07 61.6 30.1 241 32-343 52-307 (337)
14 3v7d_B Cell division control p 97.7 0.013 4.5E-07 67.2 29.8 239 33-343 124-392 (464)
15 1gxr_A ESG1, transducin-like e 97.7 0.0094 3.2E-07 64.5 26.8 158 31-258 97-261 (337)
16 4ery_A WD repeat-containing pr 97.7 0.027 9.4E-07 60.6 30.4 236 31-341 23-277 (312)
17 2ovr_B FBW7, F-BOX/WD repeat p 97.7 0.012 4.1E-07 67.3 28.4 265 33-340 121-399 (445)
18 2ovr_B FBW7, F-BOX/WD repeat p 97.7 0.023 7.7E-07 65.0 30.5 139 197-342 212-358 (445)
19 2ynn_A Coatomer subunit beta'; 97.7 0.032 1.1E-06 60.2 29.9 240 32-343 14-270 (304)
20 4aez_A CDC20, WD repeat-contai 97.6 0.0037 1.3E-07 70.6 22.0 160 31-260 176-344 (401)
21 1yfq_A Cell cycle arrest prote 97.5 0.0086 3E-07 65.2 23.1 242 31-341 11-291 (342)
22 3ei3_B DNA damage-binding prot 97.5 0.062 2.1E-06 59.7 30.1 266 31-373 73-378 (383)
23 1p22_A F-BOX/WD-repeat protein 97.5 0.014 4.7E-07 66.7 25.1 231 32-340 134-382 (435)
24 2aq5_A Coronin-1A; WD40 repeat 97.5 0.035 1.2E-06 62.3 28.0 239 34-339 37-307 (402)
25 3ow8_A WD repeat-containing pr 97.4 0.073 2.5E-06 57.9 29.1 238 30-340 31-287 (321)
26 4a11_B DNA excision repair pro 97.4 0.09 3.1E-06 58.4 30.4 254 30-341 42-332 (408)
27 1sq9_A Antiviral protein SKI8; 97.4 0.012 4E-07 65.8 22.5 76 32-119 63-157 (397)
28 1l0q_A Surface layer protein; 97.4 0.032 1.1E-06 62.1 26.0 234 33-343 33-286 (391)
29 1vyh_C Platelet-activating fac 97.4 0.055 1.9E-06 61.2 28.2 236 32-342 109-379 (410)
30 3jrp_A Fusion protein of prote 97.4 0.03 1E-06 61.6 25.3 239 31-335 11-290 (379)
31 3vl1_A 26S proteasome regulato 97.4 0.14 4.7E-06 57.5 31.0 90 17-123 82-174 (420)
32 3f3f_A Nucleoporin SEH1; struc 97.3 0.034 1.2E-06 60.0 25.0 77 31-120 11-91 (351)
33 3k26_A Polycomb protein EED; W 97.3 0.0056 1.9E-07 67.2 18.8 75 32-123 70-151 (366)
34 1r5m_A SIR4-interacting protei 97.3 0.076 2.6E-06 59.3 28.5 246 32-343 46-330 (425)
35 1k8k_C P40, ARP2/3 complex 41 97.3 0.026 9E-07 62.1 23.5 232 30-332 7-274 (372)
36 4g56_B MGC81050 protein; prote 97.3 0.06 2E-06 59.6 26.4 244 30-343 41-312 (357)
37 3frx_A Guanine nucleotide-bind 97.3 0.045 1.5E-06 59.5 24.8 240 32-340 18-275 (319)
38 3odt_A Protein DOA1; ubiquitin 97.3 0.27 9.2E-06 52.1 31.8 233 31-343 18-266 (313)
39 4ery_A WD repeat-containing pr 97.2 0.087 3E-06 56.6 26.6 190 32-293 66-267 (312)
40 1p22_A F-BOX/WD-repeat protein 97.2 0.032 1.1E-06 63.5 23.3 231 31-341 173-423 (435)
41 3v7d_B Cell division control p 97.2 0.14 4.8E-06 58.4 28.8 259 31-343 162-432 (464)
42 3dw8_B Serine/threonine-protei 97.2 0.17 5.9E-06 57.1 29.2 84 30-119 27-126 (447)
43 3zwl_B Eukaryotic translation 97.2 0.047 1.6E-06 59.6 23.7 158 31-260 74-257 (369)
44 2xzm_R RACK1; ribosome, transl 97.1 0.26 8.8E-06 53.9 29.2 241 32-337 22-290 (343)
45 3vl1_A 26S proteasome regulato 97.1 0.14 4.9E-06 57.3 27.7 231 37-341 64-332 (420)
46 1r5m_A SIR4-interacting protei 97.1 0.053 1.8E-06 60.6 23.4 243 31-334 108-363 (425)
47 1l0q_A Surface layer protein; 97.0 0.15 5.1E-06 56.6 26.4 225 43-343 4-244 (391)
48 2pm9_A Protein WEB1, protein t 97.0 0.062 2.1E-06 60.1 23.4 237 30-335 66-340 (416)
49 1pby_B Quinohemoprotein amine 97.0 0.086 2.9E-06 56.8 23.6 57 202-261 114-172 (337)
50 3bws_A Protein LP49; two-domai 97.0 0.11 3.7E-06 58.7 25.2 237 34-342 125-400 (433)
51 2pm9_A Protein WEB1, protein t 97.0 0.079 2.7E-06 59.2 23.7 244 32-342 13-304 (416)
52 1k8k_C P40, ARP2/3 complex 41 97.0 0.18 6.1E-06 55.2 26.2 203 86-343 6-244 (372)
53 3dm0_A Maltose-binding peripla 96.9 0.12 4E-06 62.9 26.3 244 31-341 382-641 (694)
54 4aow_A Guanine nucleotide-bind 96.9 0.59 2E-05 50.1 29.5 241 32-341 39-295 (340)
55 3bws_A Protein LP49; two-domai 96.9 0.15 5.3E-06 57.4 25.6 223 33-331 171-431 (433)
56 3jro_A Fusion protein of prote 96.9 0.053 1.8E-06 66.8 22.9 237 31-333 9-286 (753)
57 2aq5_A Coronin-1A; WD40 repeat 96.9 0.11 3.8E-06 58.2 23.8 239 30-334 80-344 (402)
58 3vgz_A Uncharacterized protein 96.8 0.56 1.9E-05 50.7 28.7 143 197-343 155-314 (353)
59 4gqb_B Methylosome protein 50; 96.8 0.21 7.2E-06 54.9 25.1 230 32-332 83-331 (344)
60 1pgu_A Actin interacting prote 96.8 0.062 2.1E-06 63.7 22.1 253 40-340 308-581 (615)
61 3sfz_A APAF-1, apoptotic pepti 96.8 0.049 1.7E-06 71.1 22.8 236 32-342 962-1217(1249)
62 3odt_A Protein DOA1; ubiquitin 96.8 0.43 1.5E-05 50.5 26.4 238 31-343 59-307 (313)
63 3sfz_A APAF-1, apoptotic pepti 96.7 0.42 1.4E-05 62.2 31.1 240 31-341 615-880 (1249)
64 2vdu_B TRNA (guanine-N(7)-)-me 96.7 0.32 1.1E-05 55.4 26.5 165 33-260 104-279 (450)
65 4e54_B DNA damage-binding prot 96.7 0.19 6.4E-06 57.1 23.9 72 32-118 120-195 (435)
66 1pgu_A Actin interacting prote 96.7 0.52 1.8E-05 55.5 28.7 243 30-342 17-293 (615)
67 2oaj_A Protein SNI1; WD40 repe 96.6 0.22 7.4E-06 62.7 26.3 298 41-376 447-827 (902)
68 3jrp_A Fusion protein of prote 96.6 0.17 5.9E-06 55.4 22.6 169 31-254 55-242 (379)
69 3dwl_C Actin-related protein 2 96.6 0.043 1.5E-06 60.7 17.7 154 32-253 12-178 (377)
70 1got_B GT-beta; complex (GTP-b 96.6 0.48 1.6E-05 51.6 26.0 160 32-260 98-265 (340)
71 1ri6_A Putative isomerase YBHE 96.6 1 3.5E-05 48.3 28.4 234 41-343 4-277 (343)
72 3lrv_A PRE-mRNA-splicing facto 96.6 0.043 1.5E-06 60.2 17.1 114 88-255 125-247 (343)
73 3dsm_A Uncharacterized protein 96.6 0.38 1.3E-05 52.3 24.6 143 196-342 142-311 (328)
74 3i2n_A WD repeat-containing pr 96.6 0.15 5E-06 55.5 21.2 158 32-256 66-247 (357)
75 1ri6_A Putative isomerase YBHE 96.5 0.68 2.3E-05 49.7 26.6 242 33-341 39-321 (343)
76 4g56_B MGC81050 protein; prote 96.5 0.092 3.1E-06 58.1 19.5 232 32-332 95-343 (357)
77 3dw8_B Serine/threonine-protei 96.5 0.25 8.5E-06 55.7 23.7 84 32-119 94-207 (447)
78 3gre_A Serine/threonine-protei 96.5 0.29 9.8E-06 55.3 24.1 255 32-341 64-368 (437)
79 1vyh_C Platelet-activating fac 96.5 0.3 1E-05 54.9 23.9 73 32-121 151-225 (410)
80 3f3f_A Nucleoporin SEH1; struc 96.5 0.49 1.7E-05 50.6 24.7 166 31-254 57-251 (351)
81 4a11_B DNA excision repair pro 96.5 0.62 2.1E-05 51.4 26.0 240 30-340 98-373 (408)
82 2ymu_A WD-40 repeat protein; u 96.4 1.1 3.8E-05 52.3 29.4 233 31-341 262-506 (577)
83 3dwl_C Actin-related protein 2 96.4 0.066 2.2E-06 59.2 17.5 158 31-255 55-239 (377)
84 3k26_A Polycomb protein EED; W 96.4 0.79 2.7E-05 49.6 26.0 161 31-255 18-195 (366)
85 3ei3_B DNA damage-binding prot 96.3 1.2 4.1E-05 49.0 27.5 159 30-256 117-286 (383)
86 1yfq_A Cell cycle arrest prote 96.3 0.18 6.1E-06 54.5 20.1 148 32-253 57-226 (342)
87 2ynn_A Coatomer subunit beta'; 96.2 0.66 2.2E-05 49.6 23.6 71 32-119 56-128 (304)
88 2pbi_B Guanine nucleotide-bind 96.2 1.2 4.2E-05 48.7 26.2 164 33-260 108-279 (354)
89 3lrv_A PRE-mRNA-splicing facto 96.2 1.2 4.2E-05 48.3 26.0 133 200-333 146-293 (343)
90 2ymu_A WD-40 repeat protein; u 96.1 1.7 5.9E-05 50.7 28.7 230 32-340 304-546 (577)
91 3vgz_A Uncharacterized protein 96.1 1.2 4.2E-05 47.9 25.5 143 197-344 103-274 (353)
92 1erj_A Transcriptional repress 96.0 0.73 2.5E-05 51.3 23.8 153 33-254 125-289 (393)
93 4gga_A P55CDC, cell division c 96.0 1.8 6.1E-05 48.5 27.1 235 32-340 106-361 (420)
94 3ow8_A WD repeat-containing pr 95.9 1.4 4.7E-05 47.5 24.7 156 32-259 81-244 (321)
95 1erj_A Transcriptional repress 95.9 2.3 7.8E-05 47.2 27.2 254 32-341 65-350 (393)
96 3frx_A Guanine nucleotide-bind 95.9 0.68 2.3E-05 49.9 21.9 152 32-256 108-271 (319)
97 2vdu_B TRNA (guanine-N(7)-)-me 95.9 0.36 1.2E-05 55.0 20.6 74 32-122 196-274 (450)
98 1jmx_B Amine dehydrogenase; ox 95.9 0.62 2.1E-05 50.2 21.7 59 203-262 125-185 (349)
99 3i2n_A WD repeat-containing pr 95.9 2.1 7.3E-05 45.9 26.1 235 32-333 19-292 (357)
100 4ggc_A P55CDC, cell division c 95.8 2.3 7.9E-05 44.8 27.0 74 33-122 27-101 (318)
101 2hes_X YDR267CP; beta-propelle 95.7 1.8 6.1E-05 46.7 24.5 76 31-119 14-89 (330)
102 1got_B GT-beta; complex (GTP-b 95.7 3 0.0001 45.1 31.6 234 32-341 56-310 (340)
103 3jro_A Fusion protein of prote 95.6 0.5 1.7E-05 58.0 21.6 169 31-254 53-240 (753)
104 2c2l_A CHIP, carboxy terminus 95.6 0.13 4.3E-06 54.9 14.1 56 933-990 201-260 (281)
105 2ecm_A Ring finger and CHY zin 95.5 0.007 2.4E-07 47.1 2.9 43 939-981 4-50 (55)
106 2xyi_A Probable histone-bindin 95.5 0.58 2E-05 52.9 20.1 158 32-252 182-353 (430)
107 4gqb_B Methylosome protein 50; 95.3 4.2 0.00014 44.3 28.1 198 87-341 81-298 (344)
108 2xyi_A Probable histone-bindin 95.3 1.1 3.9E-05 50.4 21.8 81 32-119 129-213 (430)
109 1iym_A EL5; ring-H2 finger, ub 95.3 0.0087 3E-07 46.5 2.7 45 937-981 2-50 (55)
110 2oaj_A Protein SNI1; WD40 repe 95.3 0.76 2.6E-05 57.7 22.0 157 32-260 18-190 (902)
111 2pbi_B Guanine nucleotide-bind 95.1 4.8 0.00016 43.8 29.8 243 32-340 65-323 (354)
112 4aow_A Guanine nucleotide-bind 95.1 0.44 1.5E-05 51.2 16.8 153 32-254 172-339 (340)
113 1nr0_A Actin interacting prote 95.0 7.7 0.00026 45.9 32.0 75 31-122 147-224 (611)
114 1x4j_A Ring finger protein 38; 95.0 0.0086 2.9E-07 50.0 1.9 43 939-981 22-67 (75)
115 3fm0_A Protein CIAO1; WDR39,SG 94.9 1.8 6.3E-05 47.0 21.4 160 33-259 18-188 (345)
116 1nir_A Nitrite reductase; hemo 94.9 7.8 0.00027 45.2 28.2 229 90-377 180-458 (543)
117 1xip_A Nucleoporin NUP159; bet 94.8 0.42 1.5E-05 53.4 15.9 83 34-139 90-172 (388)
118 3hfq_A Uncharacterized protein 94.8 5.4 0.00018 42.9 25.2 147 197-343 154-333 (347)
119 3mmy_A MRNA export factor; mRN 94.8 1.1 3.8E-05 48.4 19.2 76 31-124 86-165 (368)
120 2xzm_R RACK1; ribosome, transl 94.8 2.5 8.5E-05 45.8 22.0 156 32-257 119-290 (343)
121 3gre_A Serine/threonine-protei 94.7 2.5 8.4E-05 47.4 22.5 201 87-341 62-301 (437)
122 3dsm_A Uncharacterized protein 94.7 2.2 7.4E-05 46.2 21.0 171 197-375 56-251 (328)
123 1nir_A Nitrite reductase; hemo 94.6 5.7 0.0002 46.4 26.0 146 196-341 192-364 (543)
124 1chc_A Equine herpes virus-1 r 94.6 0.014 4.6E-07 47.7 2.2 46 938-984 3-51 (68)
125 2kiz_A E3 ubiquitin-protein li 94.6 0.023 7.9E-07 46.5 3.5 44 938-981 12-58 (69)
126 2ect_A Ring finger protein 126 94.5 0.038 1.3E-06 46.4 4.8 49 937-985 12-64 (78)
127 4h5i_A Guanine nucleotide-exch 94.4 6.6 0.00023 43.0 24.5 237 33-331 75-342 (365)
128 3u4y_A Uncharacterized protein 94.4 6.3 0.00022 41.8 26.4 226 36-334 44-306 (331)
129 3fm0_A Protein CIAO1; WDR39,SG 94.3 1.5 5.2E-05 47.7 18.9 152 32-251 62-224 (345)
130 2j04_A TAU60, YPL007P, hypothe 94.2 2.1 7.1E-05 50.0 20.1 157 31-256 85-258 (588)
131 1jmx_B Amine dehydrogenase; ox 94.1 2.9 9.8E-05 44.8 20.6 27 316-343 269-295 (349)
132 2pm7_B Protein transport prote 94.1 6.5 0.00022 41.4 23.1 73 32-119 10-86 (297)
133 4a2l_A BT_4663, two-component 94.1 4.7 0.00016 49.5 24.9 278 23-375 34-337 (795)
134 2l0b_A E3 ubiquitin-protein li 94.1 0.018 6.2E-07 50.1 2.0 43 939-981 39-84 (91)
135 2hes_X YDR267CP; beta-propelle 93.9 5.8 0.0002 42.6 22.5 160 31-253 58-231 (330)
136 2ep4_A Ring finger protein 24; 93.9 0.039 1.3E-06 45.8 3.6 45 937-981 12-59 (74)
137 4e54_B DNA damage-binding prot 93.8 1.7 5.7E-05 49.1 18.6 71 34-122 212-285 (435)
138 2d8t_A Dactylidin, ring finger 93.8 0.029 9.8E-07 46.2 2.6 52 938-991 13-67 (71)
139 3iz6_a 40S ribosomal protein R 93.7 8.9 0.00031 42.0 24.0 237 34-332 111-375 (380)
140 2ysl_A Tripartite motif-contai 93.7 0.031 1.1E-06 46.2 2.6 48 937-986 17-70 (73)
141 2ecl_A Ring-box protein 2; RNF 93.6 0.032 1.1E-06 47.4 2.6 43 939-981 14-71 (81)
142 1t1h_A Gspef-atpub14, armadill 93.5 0.033 1.1E-06 46.7 2.4 52 937-990 5-60 (78)
143 3ng2_A RNF4, snurf, ring finge 93.4 0.023 7.8E-07 46.7 1.3 50 937-986 7-64 (71)
144 3dpl_R Ring-box protein 1; ubi 93.3 0.041 1.4E-06 49.3 2.9 43 939-981 36-96 (106)
145 3q7m_A Lipoprotein YFGL, BAMB; 93.3 11 0.00038 41.0 24.7 128 231-374 236-375 (376)
146 1v87_A Deltex protein 2; ring- 93.3 0.022 7.4E-07 51.9 1.0 43 939-981 24-89 (114)
147 4gga_A P55CDC, cell division c 93.2 12 0.00042 41.4 25.2 119 87-259 229-360 (420)
148 2ecn_A Ring finger protein 141 93.2 0.018 6.3E-07 47.2 0.4 41 937-980 12-54 (70)
149 3dm0_A Maltose-binding peripla 93.1 1.9 6.5E-05 52.1 18.4 76 32-124 518-597 (694)
150 3vu4_A KMHSV2; beta-propeller 93.0 1.3 4.4E-05 48.6 15.4 81 42-125 148-233 (355)
151 4ayc_A E3 ubiquitin-protein li 92.9 0.17 5.7E-06 47.8 6.6 44 939-984 52-98 (138)
152 4a2l_A BT_4663, two-component 92.7 4.6 0.00016 49.6 21.4 97 196-293 185-290 (795)
153 2pm7_B Protein transport prote 92.7 11 0.00038 39.5 23.4 168 31-253 53-239 (297)
154 2xeu_A Ring finger protein 4; 92.7 0.031 1.1E-06 44.7 1.1 48 939-986 2-57 (64)
155 1qks_A Cytochrome CD1 nitrite 92.4 21 0.00072 41.8 25.4 146 196-341 210-382 (567)
156 3iz6_a 40S ribosomal protein R 92.3 2.1 7.2E-05 47.2 16.1 74 32-121 206-282 (380)
157 3ott_A Two-component system se 92.3 25 0.00087 42.6 27.7 138 196-335 114-263 (758)
158 1pby_B Quinohemoprotein amine 92.2 3.3 0.00011 43.9 17.1 92 197-293 48-162 (337)
159 1g25_A CDK-activating kinase a 92.0 0.044 1.5E-06 44.1 1.1 49 939-987 2-57 (65)
160 3scy_A Hypothetical bacterial 91.9 16 0.00054 39.4 25.6 101 196-297 224-343 (361)
161 2egp_A Tripartite motif-contai 91.9 0.054 1.8E-06 45.5 1.6 48 937-986 9-66 (79)
162 2ysj_A Tripartite motif-contai 91.8 0.034 1.2E-06 44.5 0.2 34 937-972 17-50 (63)
163 3mbr_X Glutamine cyclotransfer 91.7 5.7 0.00019 41.0 17.0 126 215-343 9-144 (243)
164 3u4y_A Uncharacterized protein 91.6 15 0.00053 38.7 29.0 132 204-340 109-262 (331)
165 2ct2_A Tripartite motif protei 91.3 0.099 3.4E-06 44.8 2.8 49 937-985 12-68 (88)
166 2ecv_A Tripartite motif-contai 91.3 0.091 3.1E-06 44.6 2.5 48 937-986 16-72 (85)
167 2ecj_A Tripartite motif-contai 90.9 0.046 1.6E-06 42.8 0.2 41 937-979 12-57 (58)
168 2ea6_A Ring finger protein 4; 90.7 0.043 1.5E-06 44.6 -0.1 44 937-980 12-62 (69)
169 3qil_A Clathrin heavy chain 1; 90.5 0.043 1.5E-06 49.2 -0.4 97 803-905 14-110 (125)
170 2csy_A Zinc finger protein 183 90.4 0.099 3.4E-06 44.2 1.8 43 939-983 14-59 (81)
171 2z2n_A Virginiamycin B lyase; 90.3 18 0.00062 37.2 27.3 144 225-377 141-295 (299)
172 3hxj_A Pyrrolo-quinoline quino 90.3 20 0.00069 37.7 22.9 169 197-379 150-325 (330)
173 2djb_A Polycomb group ring fin 90.2 0.12 3.9E-06 42.6 2.1 49 937-986 12-63 (72)
174 2ckl_A Polycomb group ring fin 90.1 0.11 3.8E-06 46.7 2.0 48 937-985 12-62 (108)
175 2yur_A Retinoblastoma-binding 90.0 0.13 4.3E-06 42.7 2.1 43 937-981 12-59 (74)
176 3l11_A E3 ubiquitin-protein li 89.9 0.11 3.7E-06 47.3 1.8 41 939-981 14-57 (115)
177 1bor_A Transcription factor PM 89.9 0.096 3.3E-06 40.8 1.2 41 939-982 5-45 (56)
178 3scy_A Hypothetical bacterial 89.8 24 0.00082 37.9 28.9 142 197-338 169-345 (361)
179 3fl2_A E3 ubiquitin-protein li 89.6 0.12 4E-06 47.8 1.8 46 938-985 50-99 (124)
180 2f42_A STIP1 homology and U-bo 89.6 0.22 7.4E-06 48.9 3.7 55 934-990 100-158 (179)
181 3lrq_A E3 ubiquitin-protein li 89.4 0.09 3.1E-06 46.5 0.8 55 938-993 20-78 (100)
182 4a0k_B E3 ubiquitin-protein li 89.2 0.077 2.6E-06 48.2 0.2 42 939-980 47-106 (117)
183 3vu4_A KMHSV2; beta-propeller 89.2 27 0.00093 37.6 24.4 192 87-340 18-235 (355)
184 2ecy_A TNF receptor-associated 88.8 0.073 2.5E-06 43.0 -0.3 48 937-986 12-63 (66)
185 2y43_A E3 ubiquitin-protein li 88.5 0.17 5.8E-06 44.5 2.0 46 939-985 21-69 (99)
186 4h5i_A Guanine nucleotide-exch 88.5 31 0.0011 37.4 23.5 65 36-119 140-206 (365)
187 3v9f_A Two-component system se 88.4 52 0.0018 39.9 28.6 179 196-378 462-657 (781)
188 2ecw_A Tripartite motif-contai 88.1 0.12 4E-06 43.9 0.6 48 937-986 16-72 (85)
189 2kre_A Ubiquitin conjugation f 88.1 0.24 8.3E-06 43.7 2.6 52 937-990 26-80 (100)
190 2z3z_A Dipeptidyl aminopeptida 87.7 20 0.0007 42.7 20.6 29 89-119 82-110 (706)
191 3nok_A Glutaminyl cyclase; bet 87.5 17 0.00059 37.8 16.7 126 215-343 43-175 (268)
192 3hfq_A Uncharacterized protein 87.5 32 0.0011 36.5 20.6 86 197-282 201-302 (347)
193 2oit_A Nucleoporin 214KDA; NH2 87.3 3 0.0001 47.2 12.0 82 33-120 94-182 (434)
194 2ckl_B Ubiquitin ligase protei 87.2 0.21 7.1E-06 48.7 1.8 42 941-983 55-100 (165)
195 1nr0_A Actin interacting prote 87.0 53 0.0018 38.4 30.8 236 31-339 59-320 (611)
196 2hqs_A Protein TOLB; TOLB, PAL 86.9 38 0.0013 37.5 21.0 70 32-119 179-256 (415)
197 3hxj_A Pyrrolo-quinoline quino 86.7 29 0.00099 36.4 19.2 166 197-375 110-282 (330)
198 1e4u_A Transcriptional repress 86.7 0.11 3.9E-06 43.5 -0.4 51 937-987 8-64 (78)
199 2kr4_A Ubiquitin conjugation f 86.4 0.26 8.9E-06 42.1 1.8 52 937-990 11-65 (85)
200 1jm7_B BARD1, BRCA1-associated 86.4 0.26 8.9E-06 44.9 1.9 44 939-983 21-65 (117)
201 3nol_A Glutamine cyclotransfer 86.1 11 0.00037 39.3 14.3 125 215-342 31-165 (262)
202 3ott_A Two-component system se 86.0 34 0.0012 41.5 21.4 89 196-285 204-298 (758)
203 3v9f_A Two-component system se 85.5 73 0.0025 38.6 29.4 175 196-375 375-566 (781)
204 1z6u_A NP95-like ring finger p 85.2 0.25 8.4E-06 47.3 1.1 46 939-986 77-126 (150)
205 1wgm_A Ubiquitin conjugation f 85.1 0.41 1.4E-05 42.0 2.5 52 937-990 19-74 (98)
206 1jm7_A BRCA1, breast cancer ty 84.9 0.24 8.1E-06 44.6 0.8 46 940-987 21-72 (112)
207 2bay_A PRE-mRNA splicing facto 84.6 0.33 1.1E-05 38.5 1.5 48 941-990 4-55 (61)
208 2oit_A Nucleoporin 214KDA; NH2 84.5 27 0.00093 39.1 18.2 58 197-256 165-226 (434)
209 4gq1_A NUP37; propeller, trans 84.0 53 0.0018 35.8 20.3 70 40-121 100-177 (393)
210 3ztg_A E3 ubiquitin-protein li 83.9 0.27 9.1E-06 42.6 0.7 46 936-983 9-60 (92)
211 2y1n_A E3 ubiquitin-protein li 83.9 0.42 1.4E-05 52.7 2.4 41 940-982 332-375 (389)
212 2xpi_A Anaphase-promoting comp 83.6 69 0.0024 36.8 23.4 26 587-612 376-401 (597)
213 2hqs_A Protein TOLB; TOLB, PAL 83.3 60 0.002 35.9 24.2 34 87-120 177-213 (415)
214 4ic3_A E3 ubiquitin-protein li 83.3 0.18 6.1E-06 41.8 -0.7 39 939-981 23-62 (74)
215 3hct_A TNF receptor-associated 83.0 0.39 1.3E-05 43.7 1.5 48 937-986 15-66 (118)
216 2yu4_A E3 SUMO-protein ligase 82.7 0.36 1.2E-05 42.0 1.0 50 939-990 6-68 (94)
217 2j04_B YDR362CP, TAU91; beta p 82.1 11 0.00036 43.9 13.7 74 32-121 267-344 (524)
218 2y4t_A DNAJ homolog subfamily 82.1 64 0.0022 35.3 22.8 54 381-438 32-85 (450)
219 1qks_A Cytochrome CD1 nitrite 82.0 83 0.0029 36.6 26.8 65 197-261 312-382 (567)
220 3mbr_X Glutamine cyclotransfer 81.7 47 0.0016 34.0 16.8 142 196-343 32-190 (243)
221 3hym_B Cell division cycle pro 81.7 36 0.0012 35.3 17.0 57 378-438 25-81 (330)
222 2ojh_A Uncharacterized protein 81.6 47 0.0016 33.5 22.6 32 87-119 40-71 (297)
223 2ecf_A Dipeptidyl peptidase IV 81.4 88 0.003 37.3 22.4 64 196-261 122-190 (741)
224 1rmd_A RAG1; V(D)J recombinati 81.1 0.42 1.4E-05 43.3 0.9 51 939-991 22-76 (116)
225 2ojh_A Uncharacterized protein 80.6 40 0.0014 34.1 16.6 57 202-260 194-266 (297)
226 1jof_A Carboxy-CIS,CIS-muconat 80.5 67 0.0023 34.5 25.0 148 196-343 158-354 (365)
227 4ap4_A E3 ubiquitin ligase RNF 80.3 0.52 1.8E-05 43.7 1.3 51 938-988 5-63 (133)
228 2ct0_A Non-SMC element 1 homol 80.0 1 3.6E-05 37.1 2.9 45 938-983 13-62 (74)
229 4ap4_A E3 ubiquitin ligase RNF 79.9 0.69 2.4E-05 42.8 2.0 50 939-988 71-128 (133)
230 2vje_B MDM4 protein; proto-onc 79.5 0.4 1.4E-05 38.2 0.2 43 939-981 6-51 (63)
231 3ffl_A Anaphase-promoting comp 79.3 6 0.00021 38.0 8.3 65 374-438 19-88 (167)
232 2d8s_A Cellular modulator of i 79.2 1.4 4.7E-05 37.0 3.4 47 938-984 13-69 (80)
233 2z3z_A Dipeptidyl aminopeptida 79.1 23 0.00077 42.4 15.8 68 32-119 82-150 (706)
234 4ggc_A P55CDC, cell division c 78.6 64 0.0022 33.2 24.3 35 87-121 149-183 (318)
235 3bg1_A Protein SEC13 homolog; 78.5 69 0.0024 33.5 22.5 74 31-119 13-90 (316)
236 2iwa_A Glutamine cyclotransfer 78.2 68 0.0023 33.3 18.3 175 196-378 33-238 (266)
237 3t6p_A Baculoviral IAP repeat- 77.9 0.98 3.4E-05 49.3 2.7 40 939-982 294-334 (345)
238 2cs3_A Protein C14ORF4, MY039 77.6 0.85 2.9E-05 37.2 1.5 43 940-982 15-66 (93)
239 2j04_A TAU60, YPL007P, hypothe 76.9 95 0.0033 36.1 19.1 114 88-254 85-213 (588)
240 3knv_A TNF receptor-associated 76.4 0.41 1.4E-05 45.2 -0.7 42 937-980 28-72 (141)
241 3vk6_A E3 ubiquitin-protein li 76.0 1.2 4.2E-05 38.5 2.2 38 942-980 3-43 (101)
242 2qfc_A PLCR protein; TPR, HTH, 75.4 54 0.0018 34.0 15.8 59 380-438 80-140 (293)
243 3mkq_B Coatomer subunit alpha; 74.5 54 0.0019 31.7 13.8 56 376-440 6-61 (177)
244 3c75_H MADH, methylamine dehyd 74.4 1.1E+02 0.0039 34.0 24.7 142 196-343 190-370 (426)
245 3vtx_A MAMA; tetratricopeptide 74.4 57 0.002 30.6 15.6 27 587-613 8-34 (184)
246 3f6q_B LIM and senescent cell 74.3 2.1 7.3E-05 34.5 3.3 33 939-971 10-42 (72)
247 3nol_A Glutamine cyclotransfer 74.1 86 0.0029 32.4 18.9 142 196-343 54-212 (262)
248 3nok_A Glutaminyl cyclase; bet 73.8 46 0.0016 34.6 14.0 140 196-342 66-220 (268)
249 3bg1_A Protein SEC13 homolog; 73.6 42 0.0014 35.3 14.5 30 32-61 104-137 (316)
250 2iwa_A Glutamine cyclotransfer 73.3 71 0.0024 33.2 15.5 126 215-343 9-146 (266)
251 3u3w_A Transcriptional activat 73.0 90 0.0031 32.2 17.1 60 380-439 80-141 (293)
252 2z2n_A Virginiamycin B lyase; 73.0 85 0.0029 31.9 21.1 96 197-295 154-256 (299)
253 2ecg_A Baculoviral IAP repeat- 72.6 0.77 2.6E-05 37.9 0.1 37 941-981 26-63 (75)
254 2j04_B YDR362CP, TAU91; beta p 72.1 1.2E+02 0.0042 34.7 18.9 81 32-119 208-296 (524)
255 1x4k_A Skeletal muscle LIM-pro 71.6 2.2 7.6E-05 34.6 2.7 32 940-971 5-36 (72)
256 1wyh_A SLIM 2, skeletal muscle 69.7 2.3 8E-05 34.4 2.5 32 940-971 5-36 (72)
257 2ecf_A Dipeptidyl peptidase IV 69.7 53 0.0018 39.2 15.8 30 90-120 110-139 (741)
258 3ei3_A DNA damage-binding prot 69.7 2.5E+02 0.0084 35.8 27.9 77 31-124 513-596 (1158)
259 2ho1_A Type 4 fimbrial biogene 69.7 90 0.0031 30.8 15.5 53 383-439 45-97 (252)
260 2ea5_A Cell growth regulator w 69.5 1.5 5.1E-05 35.5 1.2 40 939-982 14-54 (68)
261 2xpi_A Anaphase-promoting comp 69.4 96 0.0033 35.5 17.6 66 377-446 341-406 (597)
262 1w3b_A UDP-N-acetylglucosamine 69.2 1.2E+02 0.0043 32.3 33.0 54 381-438 5-58 (388)
263 2vje_A E3 ubiquitin-protein li 68.6 1.5 5.1E-05 35.0 1.0 44 938-981 6-52 (64)
264 3htk_C E3 SUMO-protein ligase 68.3 1.8 6.3E-05 44.7 1.8 49 939-988 180-235 (267)
265 2egq_A FHL1 protein; LIM domai 67.7 3.1 0.0001 34.3 2.8 32 940-971 15-49 (77)
266 1xip_A Nucleoporin NUP159; bet 67.7 40 0.0014 37.3 12.7 132 196-342 51-203 (388)
267 3ulq_A Response regulator aspa 67.6 1.2E+02 0.0042 32.4 17.1 56 384-439 112-169 (383)
268 1x61_A Thyroid receptor intera 67.4 2.3 7.7E-05 34.6 1.9 32 940-971 5-36 (72)
269 1q7f_A NHL, brain tumor CG1071 67.4 1.1E+02 0.0038 31.0 22.8 72 225-297 164-241 (286)
270 1jof_A Carboxy-CIS,CIS-muconat 67.4 85 0.0029 33.6 15.6 136 202-337 118-297 (365)
271 3q7m_A Lipoprotein YFGL, BAMB; 66.7 1.4E+02 0.0048 31.9 25.4 102 230-340 184-304 (376)
272 1w3b_A UDP-N-acetylglucosamine 66.7 1.4E+02 0.0048 31.9 27.4 53 383-439 41-93 (388)
273 1g47_A Pinch protein; LIM doma 66.0 2.2 7.5E-05 35.1 1.6 33 939-971 10-42 (77)
274 1rwi_B Serine/threonine-protei 65.1 1.2E+02 0.004 30.4 20.1 69 226-296 151-224 (270)
275 1npe_A Nidogen, entactin; glyc 64.9 1.2E+02 0.0042 30.6 23.2 116 225-342 122-248 (267)
276 1zfo_A LAsp-1; LIM domain, zin 64.7 1.3 4.5E-05 29.6 -0.1 29 940-969 3-31 (31)
277 3e5z_A Putative gluconolactona 64.4 1.3E+02 0.0045 30.7 22.5 172 197-377 82-286 (296)
278 1x68_A FHL5 protein; four-and- 64.2 3.9 0.00013 33.6 2.7 32 940-971 5-38 (76)
279 2kc7_A BFR218_protein; tetratr 63.6 11 0.00037 31.7 5.7 57 380-439 5-61 (99)
280 1bpo_A Protein (clathrin); cla 62.5 2E+02 0.0068 32.2 26.0 230 196-438 79-386 (494)
281 3tc9_A Hypothetical hydrolase; 62.5 1.7E+02 0.0058 32.5 17.1 146 225-376 137-300 (430)
282 2l6j_A TPR repeat-containing p 61.1 21 0.00071 30.2 7.3 54 382-439 11-64 (111)
283 1x63_A Skeletal muscle LIM-pro 60.8 5 0.00017 33.4 2.9 32 940-971 15-46 (82)
284 2yho_A E3 ubiquitin-protein li 60.7 2.2 7.4E-05 35.7 0.5 42 940-985 18-61 (79)
285 3e5z_A Putative gluconolactona 60.3 1.5E+02 0.0053 30.2 27.7 122 206-333 154-287 (296)
286 2q7f_A YRRB protein; TPR, prot 60.1 25 0.00085 34.7 8.7 58 378-439 26-83 (243)
287 1x4l_A Skeletal muscle LIM-pro 60.1 3.4 0.00012 33.5 1.7 32 940-971 5-38 (72)
288 3as5_A MAMA; tetratricopeptide 60.0 42 0.0014 31.0 9.9 54 381-438 14-67 (186)
289 1k32_A Tricorn protease; prote 59.4 3.2E+02 0.011 34.1 20.8 67 33-117 205-272 (1045)
290 3gyz_A Chaperone protein IPGC; 58.9 10 0.00036 35.6 5.1 59 383-445 44-102 (151)
291 3sjl_D Methylamine dehydrogena 58.7 63 0.0022 35.6 12.2 108 233-343 43-180 (386)
292 2qc5_A Streptogramin B lactona 58.1 1.6E+02 0.0055 29.7 26.8 144 225-376 146-299 (300)
293 1na3_A Designed protein CTPR2; 58.0 14 0.0005 29.9 5.5 53 383-439 17-69 (91)
294 3sjl_D Methylamine dehydrogena 57.9 98 0.0034 34.0 13.5 53 210-262 114-179 (386)
295 3hcs_A TNF receptor-associated 57.8 2.8 9.5E-05 40.7 0.8 48 937-986 15-66 (170)
296 4gco_A Protein STI-1; structur 57.7 13 0.00045 33.4 5.5 53 383-439 21-73 (126)
297 2d8z_A Four and A half LIM dom 56.4 6.7 0.00023 31.4 2.8 30 940-971 5-34 (70)
298 4gcn_A Protein STI-1; structur 56.1 24 0.00084 31.5 7.1 56 383-438 50-108 (127)
299 2q7f_A YRRB protein; TPR, prot 55.9 68 0.0023 31.3 11.3 53 382-438 64-116 (243)
300 3upv_A Heat shock protein STI1 54.9 20 0.0007 31.5 6.3 55 381-439 10-64 (126)
301 2cup_A Skeletal muscle LIM-pro 54.9 6.7 0.00023 34.1 2.8 32 940-971 5-36 (101)
302 2cu8_A Cysteine-rich protein 2 54.7 8.3 0.00028 31.5 3.2 31 940-971 9-39 (76)
303 3k9i_A BH0479 protein; putativ 54.6 21 0.00073 31.1 6.3 52 383-438 35-86 (117)
304 3nw0_A Non-structural maintena 54.6 4.5 0.00016 41.6 1.8 42 939-982 179-225 (238)
305 1x62_A C-terminal LIM domain p 54.5 5.9 0.0002 32.8 2.2 31 939-971 14-44 (79)
306 1a7i_A QCRP2 (LIM1); LIM domai 54.3 7.3 0.00025 32.3 2.8 32 939-971 6-37 (81)
307 4gcn_A Protein STI-1; structur 54.2 24 0.00082 31.6 6.6 53 383-439 16-68 (127)
308 3fp2_A TPR repeat-containing p 53.6 2.7E+02 0.0092 30.9 30.2 60 382-445 32-91 (537)
309 2xev_A YBGF; tetratricopeptide 53.3 31 0.0011 30.1 7.3 59 379-438 6-64 (129)
310 1q7f_A NHL, brain tumor CG1071 52.5 2E+02 0.0067 29.0 25.4 141 196-342 90-247 (286)
311 2dg1_A DRP35, lactonase; beta 52.4 2.2E+02 0.0074 29.5 20.2 229 87-375 43-314 (333)
312 3ma5_A Tetratricopeptide repea 52.3 22 0.00075 30.2 5.8 52 383-438 15-66 (100)
313 1hxi_A PEX5, peroxisome target 51.8 26 0.00089 31.0 6.4 58 378-439 20-77 (121)
314 1wim_A KIAA0161 protein; ring 50.8 5.9 0.0002 34.0 1.7 34 939-972 4-38 (94)
315 2xcb_A PCRH, regulatory protei 50.5 25 0.00087 31.9 6.3 54 382-439 25-78 (142)
316 1iml_A CRIP, cysteine rich int 50.5 9.8 0.00034 31.0 3.0 28 942-970 2-29 (76)
317 2ho1_A Type 4 fimbrial biogene 50.4 1.9E+02 0.0065 28.2 16.2 54 382-439 78-131 (252)
318 2dj7_A Actin-binding LIM prote 50.2 6.5 0.00022 32.7 1.8 37 934-971 9-45 (80)
319 1nyp_A Pinch protein; LIM doma 50.1 5.5 0.00019 31.6 1.3 30 940-971 5-34 (66)
320 4gco_A Protein STI-1; structur 49.8 19 0.00064 32.3 5.1 53 383-439 55-107 (126)
321 4gyw_A UDP-N-acetylglucosamine 49.7 92 0.0032 37.5 12.6 53 383-439 17-69 (723)
322 3fvz_A Peptidyl-glycine alpha- 49.5 2.5E+02 0.0085 29.3 23.7 114 226-340 144-285 (329)
323 2d8y_A Eplin protein; LIM doma 49.1 8.1 0.00028 32.9 2.3 34 937-971 12-45 (91)
324 2cup_A Skeletal muscle LIM-pro 49.1 9.8 0.00033 33.0 2.9 31 940-970 66-96 (101)
325 2d8x_A Protein pinch; LIM doma 48.9 9.6 0.00033 30.5 2.6 31 939-971 4-34 (70)
326 2cur_A Skeletal muscle LIM-pro 48.5 7.6 0.00026 31.0 1.9 30 940-971 5-34 (69)
327 2iyb_E Testin, TESS, TES; LIM 48.5 12 0.00042 29.4 3.1 31 941-971 3-35 (65)
328 3vtx_A MAMA; tetratricopeptide 48.4 19 0.00064 34.2 5.2 59 383-445 115-173 (184)
329 2kck_A TPR repeat; tetratricop 48.3 24 0.00082 29.5 5.5 54 382-439 13-66 (112)
330 2co8_A NEDD9 interacting prote 48.1 4.7 0.00016 33.7 0.6 32 939-971 14-45 (82)
331 1r79_A Diacylglycerol kinase, 47.9 10 0.00035 31.9 2.6 42 939-981 37-82 (84)
332 1elw_A TPR1-domain of HOP; HOP 47.9 32 0.0011 29.0 6.3 56 380-439 9-64 (118)
333 2ehe_A Four and A half LIM dom 47.7 4.5 0.00015 33.7 0.4 30 941-970 16-45 (82)
334 3c75_H MADH, methylamine dehyd 47.6 82 0.0028 35.2 10.9 108 232-343 82-220 (426)
335 2dba_A Smooth muscle cell asso 47.4 35 0.0012 30.4 6.8 59 380-439 33-91 (148)
336 4ga2_A E3 SUMO-protein ligase 46.8 21 0.00072 33.0 5.1 53 383-439 39-91 (150)
337 3sz7_A HSC70 cochaperone (SGT) 46.7 30 0.001 32.2 6.3 55 381-439 17-71 (164)
338 2l4z_A DNA endonuclease RBBP8, 45.4 11 0.00037 34.3 2.7 31 940-971 61-91 (123)
339 2vgx_A Chaperone SYCD; alterna 45.3 34 0.0012 31.5 6.3 54 382-439 28-81 (148)
340 2cuq_A Four and A half LIM dom 44.9 9.6 0.00033 31.4 2.0 30 940-971 15-44 (80)
341 3q49_B STIP1 homology and U bo 43.9 38 0.0013 29.9 6.3 55 381-439 15-69 (137)
342 3urz_A Uncharacterized protein 43.8 43 0.0015 32.7 7.2 66 380-445 9-86 (208)
343 2lni_A Stress-induced-phosphop 43.7 35 0.0012 29.6 6.0 56 380-439 21-76 (133)
344 1x64_A Alpha-actinin-2 associa 43.5 10 0.00034 32.2 2.0 31 939-971 24-54 (89)
345 1x68_A FHL5 protein; four-and- 43.4 21 0.00073 28.9 4.0 37 941-978 36-72 (76)
346 1zbd_B Rabphilin-3A; G protein 43.1 94 0.0032 28.5 8.6 34 938-971 53-89 (134)
347 2vq2_A PILW, putative fimbrial 42.8 2.2E+02 0.0076 26.8 16.9 55 381-439 14-68 (225)
348 4b6d_A RAC GTPase-activating p 42.6 14 0.00049 28.9 2.5 34 939-972 18-53 (61)
349 2dlo_A Thyroid receptor-intera 42.3 11 0.00037 31.3 2.0 31 939-971 14-44 (81)
350 1elw_A TPR1-domain of HOP; HOP 41.9 60 0.0021 27.1 7.1 54 382-439 45-98 (118)
351 2r5s_A Uncharacterized protein 41.6 41 0.0014 31.7 6.4 57 378-438 9-65 (176)
352 2dlo_A Thyroid receptor-intera 41.4 8.7 0.0003 31.8 1.2 37 941-977 42-78 (81)
353 2dar_A PDZ and LIM domain prot 41.2 12 0.0004 31.8 2.1 31 939-971 24-54 (90)
354 3q15_A PSP28, response regulat 40.6 3.6E+02 0.012 28.6 15.9 168 385-609 111-286 (378)
355 3upv_A Heat shock protein STI1 40.4 48 0.0016 28.9 6.3 54 382-439 45-98 (126)
356 2kck_A TPR repeat; tetratricop 40.0 36 0.0012 28.4 5.2 56 382-439 47-103 (112)
357 1q47_A Semaphorin 3A; beta pro 39.6 43 0.0015 38.3 7.0 75 33-117 405-489 (495)
358 4gz8_A Semaphorin-3A; multi-do 39.5 24 0.00082 42.0 5.0 66 43-118 431-498 (667)
359 3ro2_A PINS homolog, G-protein 39.5 60 0.002 33.4 7.9 57 382-438 12-68 (338)
360 1elr_A TPR2A-domain of HOP; HO 39.3 75 0.0026 27.1 7.5 53 382-438 11-63 (131)
361 4gyw_A UDP-N-acetylglucosamine 39.2 2.9E+02 0.0098 33.1 14.7 27 587-613 12-38 (723)
362 2oiz_A Aromatic amine dehydrog 39.1 3.8E+02 0.013 28.5 23.4 47 323-375 286-332 (361)
363 1bpo_A Protein (clathrin); cla 38.9 4.6E+02 0.016 29.4 21.5 91 195-297 214-325 (494)
364 3ro3_A PINS homolog, G-protein 38.8 63 0.0022 28.8 7.1 56 383-438 17-74 (164)
365 2ghs_A AGR_C_1268P; regucalcin 38.8 3.6E+02 0.012 28.1 23.1 91 205-297 161-263 (326)
366 2ehe_A Four and A half LIM dom 38.0 28 0.00097 28.6 3.9 36 941-977 44-79 (82)
367 2v5f_A Prolyl 4-hydroxylase su 37.7 32 0.0011 29.6 4.5 57 383-439 13-72 (104)
368 1v6g_A Actin binding LIM prote 37.7 12 0.00041 31.0 1.5 29 941-971 16-44 (81)
369 2vyi_A SGTA protein; chaperone 37.6 83 0.0028 26.7 7.5 55 381-439 18-72 (131)
370 2kat_A Uncharacterized protein 37.6 58 0.002 27.9 6.3 52 383-438 27-78 (115)
371 2lri_C Autoimmune regulator; Z 37.1 15 0.00052 29.3 1.9 32 939-972 11-42 (66)
372 2xev_A YBGF; tetratricopeptide 36.8 59 0.002 28.1 6.4 55 383-438 47-101 (129)
373 4a1s_A PINS, partner of inscut 36.5 65 0.0022 34.8 7.9 57 382-438 55-111 (411)
374 2lni_A Stress-induced-phosphop 36.5 47 0.0016 28.7 5.6 54 382-439 57-110 (133)
375 4i17_A Hypothetical protein; T 36.5 69 0.0024 31.3 7.5 63 383-445 84-149 (228)
376 1elr_A TPR2A-domain of HOP; HO 36.4 77 0.0026 27.0 7.0 57 382-438 45-104 (131)
377 1wig_A KIAA1808 protein; LIM d 36.3 8.2 0.00028 31.4 0.2 28 941-970 6-33 (73)
378 2yhc_A BAMD, UPF0169 lipoprote 36.2 61 0.0021 32.0 7.0 57 381-438 10-66 (225)
379 2mad_H Methylamine dehydrogena 36.1 4.4E+02 0.015 28.3 27.5 50 323-377 298-350 (373)
380 3sf4_A G-protein-signaling mod 36.0 68 0.0023 34.3 7.9 58 381-438 15-72 (406)
381 2xzh_A Clathrin heavy chain 1; 35.8 4.4E+02 0.015 28.3 21.7 62 195-256 215-294 (365)
382 2xjy_A Rhombotin-2; oncoprotei 35.6 17 0.0006 33.1 2.4 30 942-971 68-97 (131)
383 1wyh_A SLIM 2, skeletal muscle 35.4 19 0.00063 28.8 2.3 36 941-977 34-69 (72)
384 2vyi_A SGTA protein; chaperone 35.1 65 0.0022 27.5 6.3 54 382-439 53-106 (131)
385 3qky_A Outer membrane assembly 35.0 68 0.0023 32.3 7.3 57 381-438 21-77 (261)
386 1na0_A Designed protein CTPR3; 35.0 99 0.0034 25.9 7.5 53 382-438 16-68 (125)
387 2rgt_A Fusion of LIM/homeobox 34.9 22 0.00076 34.1 3.2 30 941-970 66-95 (169)
388 3fvz_A Peptidyl-glycine alpha- 34.9 4E+02 0.014 27.6 20.1 98 196-295 209-323 (329)
389 3ro3_A PINS homolog, G-protein 34.8 78 0.0027 28.1 7.1 56 383-438 57-114 (164)
390 1rwi_B Serine/threonine-protei 34.7 3.4E+02 0.012 26.7 16.8 55 197-252 163-222 (270)
391 2d8z_A Four and A half LIM dom 34.6 13 0.00045 29.6 1.3 36 941-977 32-67 (70)
392 3sz7_A HSC70 cochaperone (SGT) 34.6 61 0.0021 29.9 6.3 53 382-438 52-104 (164)
393 2fbn_A 70 kDa peptidylprolyl i 34.5 74 0.0025 30.4 7.2 57 383-439 46-114 (198)
394 2vrw_B P95VAV, VAV1, proto-onc 34.4 23 0.00078 39.4 3.7 44 939-984 356-403 (406)
395 2yt5_A Metal-response element- 34.4 28 0.00094 27.5 3.1 34 939-972 5-41 (66)
396 3rkv_A Putative peptidylprolyl 34.4 39 0.0013 31.3 4.8 53 383-439 71-123 (162)
397 1kbe_A Kinase suppressor of RA 34.1 27 0.00092 26.0 2.7 30 941-971 15-44 (49)
398 3g4e_A Regucalcin; six bladed 34.0 3.9E+02 0.013 27.2 22.9 144 197-343 67-240 (297)
399 2l3k_A Rhombotin-2, linker, LI 33.9 9.3 0.00032 34.7 0.2 10 942-951 10-19 (123)
400 2co8_A NEDD9 interacting prote 33.8 18 0.00062 30.0 2.0 32 941-972 43-75 (82)
401 1x4k_A Skeletal muscle LIM-pro 33.6 20 0.00067 28.7 2.2 36 941-977 34-69 (72)
402 1z68_A Fibroblast activation p 33.5 1.2E+02 0.0043 35.8 10.4 66 43-122 28-102 (719)
403 2yql_A PHD finger protein 21A; 33.4 33 0.0011 26.2 3.3 32 939-972 8-39 (56)
404 2yuu_A NPKC-delta, protein kin 33.4 56 0.0019 27.2 5.0 49 938-987 26-77 (83)
405 1x6a_A LIMK-2, LIM domain kina 33.2 9.8 0.00034 31.5 0.2 29 941-971 16-44 (81)
406 1pjx_A Dfpase, DIISOPROPYLFLUO 33.2 3.9E+02 0.014 26.9 23.6 214 41-332 28-299 (314)
407 1j2o_A FLIN2, fusion of rhombo 33.1 24 0.00081 31.4 2.8 31 940-971 3-33 (114)
408 2ece_A 462AA long hypothetical 32.9 2.4E+02 0.0082 31.7 11.5 21 322-342 227-247 (462)
409 1hxi_A PEX5, peroxisome target 32.7 61 0.0021 28.5 5.6 53 383-439 59-111 (121)
410 2xcb_A PCRH, regulatory protei 32.6 60 0.0021 29.2 5.8 52 383-438 60-111 (142)
411 3ieg_A DNAJ homolog subfamily 32.5 4.2E+02 0.014 27.0 26.4 54 381-438 9-62 (359)
412 1na0_A Designed protein CTPR3; 32.3 78 0.0027 26.6 6.3 53 382-438 50-102 (125)
413 1wil_A KIAA1045 protein; ring 32.2 12 0.0004 31.1 0.5 33 937-972 12-47 (89)
414 2xqn_T Testin, TESS; metal-bin 32.1 24 0.00083 31.9 2.8 31 941-971 64-96 (126)
415 1a17_A Serine/threonine protei 32.1 71 0.0024 28.9 6.3 54 382-439 20-73 (166)
416 1x3h_A Leupaxin; paxillin fami 32.0 17 0.00058 29.9 1.5 30 940-971 15-44 (80)
417 3ieg_A DNAJ homolog subfamily 31.9 84 0.0029 32.7 7.6 58 382-439 241-298 (359)
418 1wig_A KIAA1808 protein; LIM d 31.7 12 0.00041 30.3 0.5 31 941-972 32-63 (73)
419 4fww_A Macrophage-stimulating 31.7 45 0.0015 38.5 5.7 75 30-117 403-481 (527)
420 2dba_A Smooth muscle cell asso 31.6 71 0.0024 28.2 6.1 53 383-439 73-125 (148)
421 3rkv_A Putative peptidylprolyl 31.4 87 0.003 28.7 6.8 65 381-445 17-95 (162)
422 2fo7_A Synthetic consensus TPR 31.2 78 0.0027 26.9 6.2 52 383-438 43-94 (136)
423 1olz_A Semaphorin 4D; developm 31.1 61 0.0021 38.6 6.7 73 33-119 398-481 (663)
424 2puy_A PHD finger protein 21A; 31.0 33 0.0011 26.6 2.9 32 939-972 4-35 (60)
425 3gyz_A Chaperone protein IPGC; 30.8 58 0.002 30.3 5.3 52 383-438 78-129 (151)
426 2qfc_A PLCR protein; TPR, HTH, 30.6 73 0.0025 32.9 6.7 57 383-439 163-222 (293)
427 2vgx_A Chaperone SYCD; alterna 30.4 68 0.0023 29.3 5.8 52 383-438 63-114 (148)
428 3qou_A Protein YBBN; thioredox 30.4 89 0.003 32.3 7.4 55 381-439 123-177 (287)
429 3mkr_A Coatomer subunit epsilo 30.3 4.6E+02 0.016 26.8 20.4 58 545-612 36-93 (291)
430 3ei3_A DNA damage-binding prot 30.0 9.5E+02 0.032 30.4 29.9 145 195-343 441-602 (1158)
431 3q49_B STIP1 homology and U bo 29.8 87 0.003 27.3 6.3 53 382-438 50-102 (137)
432 1xwh_A Autoimmune regulator; P 29.7 37 0.0013 26.9 3.1 32 939-972 7-38 (66)
433 3urz_A Uncharacterized protein 29.6 52 0.0018 32.1 5.1 52 383-438 62-113 (208)
434 2fbn_A 70 kDa peptidylprolyl i 29.3 55 0.0019 31.4 5.1 53 383-439 96-148 (198)
435 2lo3_A SAGA-associated factor 29.3 6.4 0.00022 27.9 -1.3 16 941-956 18-33 (44)
436 2cor_A Pinch protein; LIM doma 29.0 22 0.00074 29.3 1.7 31 939-971 14-44 (79)
437 1xfd_A DIP, dipeptidyl aminope 29.0 6.1E+02 0.021 29.4 15.5 59 203-261 91-152 (723)
438 2hr2_A Hypothetical protein; a 28.8 60 0.0021 30.8 5.0 56 383-439 65-128 (159)
439 2pl2_A Hypothetical conserved 28.7 77 0.0026 31.1 6.2 55 381-439 11-65 (217)
440 3oky_B Putative uncharacterize 28.5 1E+02 0.0035 35.7 7.7 76 32-117 403-497 (565)
441 2fo7_A Synthetic consensus TPR 28.5 1.3E+02 0.0046 25.3 7.3 53 382-438 8-60 (136)
442 3qwp_A SET and MYND domain-con 28.4 99 0.0034 34.5 7.6 59 380-439 292-355 (429)
443 3dr2_A Exported gluconolactona 28.4 4.9E+02 0.017 26.5 18.3 168 197-375 99-304 (305)
444 2dar_A PDZ and LIM domain prot 28.4 21 0.00072 30.1 1.5 32 941-973 52-83 (90)
445 4eqf_A PEX5-related protein; a 28.3 5.2E+02 0.018 26.8 14.9 27 587-613 102-128 (365)
446 1a17_A Serine/threonine protei 28.3 91 0.0031 28.1 6.3 54 382-439 54-107 (166)
447 3al9_A Plexin-A2; beta-propell 28.1 63 0.0022 37.3 6.0 72 33-118 401-479 (539)
448 2c2l_A CHIP, carboxy terminus 27.6 1.2E+02 0.0041 31.2 7.7 61 381-445 10-70 (281)
449 2vpb_A Hpygo1, pygopus homolog 27.5 26 0.00089 27.8 1.8 33 939-971 7-42 (65)
450 4ga2_A E3 SUMO-protein ligase 27.4 3.4E+02 0.012 24.3 12.6 28 586-613 33-60 (150)
451 2pzi_A Probable serine/threoni 27.4 1.9E+02 0.0066 34.2 10.5 159 373-609 389-559 (681)
452 1rut_X Flinc4, fusion protein 27.3 24 0.00083 34.5 2.0 29 942-970 71-99 (188)
453 2l5u_A Chromodomain-helicase-D 27.1 34 0.0011 26.7 2.4 33 938-972 9-41 (61)
454 2cor_A Pinch protein; LIM doma 27.0 13 0.00046 30.6 0.0 31 941-973 42-72 (79)
455 2zet_C Melanophilin; complex, 26.6 2.1E+02 0.0073 26.8 8.3 31 939-969 67-100 (153)
456 3k9i_A BH0479 protein; putativ 26.4 31 0.001 30.0 2.4 51 388-439 3-53 (117)
457 2xqn_T Testin, TESS; metal-bin 26.0 33 0.0011 30.9 2.5 36 942-978 32-67 (126)
458 2xjy_A Rhombotin-2; oncoprotei 25.7 43 0.0015 30.4 3.3 29 941-970 3-31 (131)
459 1x61_A Thyroid receptor intera 25.6 25 0.00086 28.1 1.4 32 941-973 34-65 (72)
460 4gq1_A NUP37; propeller, trans 25.4 1.1E+02 0.0038 33.1 7.4 72 31-119 136-218 (393)
461 3n71_A Histone lysine methyltr 25.3 1.1E+02 0.0038 34.8 7.4 56 383-439 317-377 (490)
462 3u4t_A TPR repeat-containing p 25.2 44 0.0015 33.6 3.7 23 589-611 226-248 (272)
463 1wev_A Riken cDNA 1110020M19; 25.1 42 0.0014 28.4 2.8 34 939-972 15-51 (88)
464 4i17_A Hypothetical protein; T 25.0 1.1E+02 0.0038 29.7 6.7 55 381-439 13-68 (228)
465 1ihg_A Cyclophilin 40; ppiase 24.9 1.5E+02 0.0052 32.1 8.2 58 382-439 230-299 (370)
466 3u4t_A TPR repeat-containing p 24.8 85 0.0029 31.4 5.9 58 378-439 6-63 (272)
467 3nvq_A Semaphorin-7A; beta-pro 24.8 1.1E+02 0.0038 35.6 7.2 65 43-119 382-448 (590)
468 1xfd_A DIP, dipeptidyl aminope 24.5 8.7E+02 0.03 28.1 17.3 71 34-120 63-144 (723)
469 1n7d_A LDL receptor, low-densi 24.1 3.5E+02 0.012 32.1 11.9 115 226-342 497-624 (699)
470 1hh8_A P67PHOX, NCF-2, neutrop 24.1 1.1E+02 0.0038 29.2 6.3 23 589-611 126-148 (213)
471 1x4l_A Skeletal muscle LIM-pro 24.0 28 0.00096 27.8 1.4 31 941-972 36-66 (72)
472 4abn_A Tetratricopeptide repea 23.7 6.6E+02 0.023 27.7 13.7 153 587-818 105-281 (474)
473 3oky_A Plexin-A2; transmembran 23.7 1.1E+02 0.0038 36.3 7.0 72 33-118 400-478 (681)
474 2ku3_A Bromodomain-containing 23.3 36 0.0012 27.5 2.0 36 937-972 13-51 (71)
475 2cuq_A Four and A half LIM dom 23.1 39 0.0013 27.6 2.2 31 941-972 42-72 (80)
476 1faq_A RAF-1; transferase, ser 23.0 27 0.00092 26.0 1.1 33 939-972 13-45 (52)
477 2oiz_A Aromatic amine dehydrog 22.9 6.8E+02 0.023 26.3 20.4 52 286-339 287-343 (361)
478 2d8x_A Protein pinch; LIM doma 22.6 25 0.00086 27.9 0.9 31 941-972 32-62 (70)
479 1x3h_A Leupaxin; paxillin fami 22.6 25 0.00086 28.8 0.9 37 941-978 42-78 (80)
480 3as5_A MAMA; tetratricopeptide 22.5 1.9E+02 0.0065 26.2 7.5 53 382-438 83-135 (186)
481 1fwx_A Nitrous oxide reductase 22.4 9.4E+02 0.032 27.8 16.9 97 243-342 254-381 (595)
482 2fnf_X Putative RAS effector N 22.3 51 0.0018 26.6 2.7 35 938-972 33-67 (72)
483 1we9_A PHD finger family prote 22.3 59 0.002 25.4 3.0 34 939-972 5-40 (64)
484 1qqe_A Vesicular transport pro 22.2 1.3E+02 0.0043 31.1 6.6 57 383-439 166-225 (292)
485 3cv0_A Peroxisome targeting si 22.1 1.7E+02 0.0058 29.8 7.7 59 377-439 23-81 (327)
486 2cur_A Skeletal muscle LIM-pro 21.8 33 0.0011 27.1 1.4 31 941-972 32-62 (69)
487 2vxg_A LD41624, GE-1, CG6181-P 21.6 45 0.0015 30.9 2.5 21 378-398 3-23 (139)
488 4eqf_A PEX5-related protein; a 21.4 1.2E+02 0.004 32.1 6.3 58 378-439 68-125 (365)
489 3bee_A Putative YFRE protein; 21.3 2.5E+02 0.0084 23.4 7.1 44 391-438 25-68 (93)
490 2if4_A ATFKBP42; FKBP-like, al 21.2 1.1E+02 0.0039 32.5 6.1 59 383-445 238-296 (338)
491 2gw1_A Mitochondrial precursor 21.1 8.1E+02 0.028 26.5 28.0 326 378-868 42-474 (514)
492 3gw4_A Uncharacterized protein 20.9 1.7E+02 0.0057 27.4 6.9 56 383-438 115-172 (203)
493 1mm2_A MI2-beta; PHD, zinc fin 20.9 35 0.0012 26.6 1.3 32 939-972 8-39 (61)
494 3j21_V 50S ribosomal protein L 20.9 77 0.0026 25.2 3.3 27 940-966 4-32 (66)
495 3gw4_A Uncharacterized protein 20.8 1.8E+02 0.0061 27.2 7.0 56 383-438 34-91 (203)
496 1vq8_U 50S ribosomal protein L 20.8 77 0.0026 25.2 3.3 26 941-966 4-31 (66)
497 3g4e_A Regucalcin; six bladed 20.7 6.6E+02 0.023 25.3 24.6 110 203-315 128-251 (297)
498 3u3w_A Transcriptional activat 20.6 1.5E+02 0.005 30.5 6.8 55 384-438 164-221 (293)
499 3qww_A SET and MYND domain-con 20.5 1.7E+02 0.0059 32.6 7.6 56 383-439 348-408 (433)
500 3edt_B KLC 2, kinesin light ch 20.3 1.9E+02 0.0065 28.5 7.4 56 383-438 51-110 (283)
No 1
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=99.42 E-value=4.4e-15 Score=163.93 Aligned_cols=304 Identities=14% Similarity=0.210 Sum_probs=222.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChH
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSS 601 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~ 601 (997)
...|++||++.|++... ..|||.|+.||+++++..++.+|++++|..+++.+-+.|.+.|.|++...||..-++|.
T Consensus 99 ~edLv~yL~MaRk~~ke----~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a 174 (624)
T 3lvg_A 99 WEELVKYLQMARKKARE----SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG 174 (624)
T ss_dssp CTTHHHHHHTTSTTCCS----TTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT
T ss_pred HHHHHHHHHHHHHHhcc----cccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH
Confidence 46699999999987432 58999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhh------hccCchhhh
Q 043572 602 KALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWI------ADINAVLAV 675 (997)
Q Consensus 602 ~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wl------l~~~p~~~l 675 (997)
+.-.++..|++-+. +.++++.-+.... ||-...- ++.-...|+
T Consensus 175 kLAstLV~L~~yq~---------------------------AVdaArKAns~kt----WKeV~~ACvd~~EfrLAqicGL 223 (624)
T 3lvg_A 175 RLASTLVHLGEYQA---------------------------AVDGARKANSTRT----WKEVCFACVDGKEFRLAQMCGL 223 (624)
T ss_dssp TTSSSSSSCSGGGS---------------------------STTTTTTCCSSCS----HHHHTHHHHHSCTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHhcCChhH----HHHHHHHHhCchHHHHHHHhcc
Confidence 87777776665321 0112222222222 2211111 123445688
Q ss_pred hhcccccccCCCChhHHHHHhhcc-ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCcc
Q 043572 676 KVLTSEKRINQLSPDKVIAAIDSK-KVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGET 754 (997)
Q Consensus 676 ~if~~~~~~~~l~~~~Vl~~L~~~-~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~ 754 (997)
.|++. .+.++ .++.+-+.. .-+.++.-||.=+. .....-.+.|+|+.+|.
T Consensus 224 niIvh---adeL~--elv~~YE~~G~f~ELIsLlEaglg-lErAHmGmFTELaILYs----------------------- 274 (624)
T 3lvg_A 224 HIVVH---ADELE--ELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYS----------------------- 274 (624)
T ss_dssp HHHCC---SSCCS--GGGSSSSTTCCCTTSTTTHHHHTT-STTCCHHHHHHHHHHHH-----------------------
T ss_pred hhccc---HHHHH--HHHHHHHhCCCHHHHHHHHHHHhC-CCchhHHHHHHHHHHHH-----------------------
Confidence 88875 23332 333332221 11344666776442 22234678899999882
Q ss_pred ccCCCCCCCcccHHHHHHHHHHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhc---CCHHHHHH
Q 043572 755 RSSGYGKNSIFQCPVQERLQIFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKL---EDSEAAEQ 830 (997)
Q Consensus 755 ~~~~~~~~~~~~~~~r~kL~~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l---~D~~~Ae~ 830 (997)
+|.++||+++|+. ++..++.++++.|++..+|.|.++||.+-.+++.|...++..- =|.+.-.+
T Consensus 275 ------------KY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkd 342 (624)
T 3lvg_A 275 ------------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 342 (624)
T ss_dssp ------------SSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTT
T ss_pred ------------hcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHH
Confidence 3668899999998 6799999999999999999999999999999999998888431 12223344
Q ss_pred HHhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 831 YCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 831 yC~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
.+.++.+.++|...+.+|++.. |.. +.+||.--.+++|+..|++.+-..-.++.+++||..+...++...+
T Consensus 343 ii~KVaN~EiyYKAi~FYL~e~----P~l--L~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVN 413 (624)
T 3lvg_A 343 IITKVANVELYYRAIQFYLEFK----PLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN 413 (624)
T ss_dssp TGGGCSCSHHHHHHHHHHTTSC----CTT--SHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHhC----hHH--HHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHH
Confidence 5566678899999999999874 433 6677777778999999999999998999999999877655444333
No 2
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.32 E-value=1e-10 Score=146.00 Aligned_cols=305 Identities=15% Similarity=0.186 Sum_probs=211.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChH
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSS 601 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~ 601 (997)
...+++||...|+... ...+||.|..+|+++++.+++..|+..+|..++..+.+.+.+.|+|++...+|.+-++|.
T Consensus 1150 yEEAIeyL~mArk~~~----e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~ 1225 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKAR----ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG 1225 (1630)
T ss_pred HHHHHHHHHHHHhhcc----cccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHH
Confidence 3455667766655432 136899999999999988889999988888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhh-----ccCchhhhh
Q 043572 602 KALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIA-----DINAVLAVK 676 (997)
Q Consensus 602 ~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll-----~~~p~~~l~ 676 (997)
++..++.++++-+ .++++++.- .+.+.+.+.+.-.+ +.-...++.
T Consensus 1226 rLA~tLvkLge~q---------------------------~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQ---------------------------AAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHHHHHHHhCCHH---------------------------HHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 9999988875321 122333332 23332111111111 111122333
Q ss_pred hcccccccCCCChhHHHHHhhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccc
Q 043572 677 VLTSEKRINQLSPDKVIAAIDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETR 755 (997)
Q Consensus 677 if~~~~~~~~l~~~~Vl~~L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~ 755 (997)
|... .+. ...++.+... ..-+.++.++|.-+.- +.....+.+.|+.+|.
T Consensus 1276 Iiv~---~de--Leeli~yYe~~G~feEAI~LlE~aL~L-eraH~gmftELaiLya------------------------ 1325 (1630)
T 1xi4_A 1276 IVVH---ADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS------------------------ 1325 (1630)
T ss_pred hhcC---HHH--HHHHHHHHHHcCCHHHHHHHHHHHhcc-ChhHhHHHHHHHHHHH------------------------
Confidence 2221 011 1233444432 2235678888887642 2334567777877773
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC---HHHHHHH
Q 043572 756 SSGYGKNSIFQCPVQERLQIFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED---SEAAEQY 831 (997)
Q Consensus 756 ~~~~~~~~~~~~~~r~kL~~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D---~~~Ae~y 831 (997)
++-.+++++.++. ++.-+..++++.|.+..+|.|.++||.+-|+++.|+..++....+ .+.-.+.
T Consensus 1326 -----------Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1326 -----------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred -----------hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 3567888888887 677899999999999999999999999999999999988854322 1122234
Q ss_pred HhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 832 CAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 832 C~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
+.+..+.++|...+.+|+... |. ...+||.--.+.+|+..+++++-+.-.++.+++|+..+...+....+
T Consensus 1395 i~kv~n~elyykai~Fyl~~~----P~--~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vn 1464 (1630)
T 1xi4_A 1395 ITKVANVELYYRAIQFYLEFK----PL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN 1464 (1630)
T ss_pred hcccccHHHHHHHHHHHHhhC----hH--HHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhh
Confidence 455678899999999999652 43 36677776678999999999999888999999999987755544333
No 3
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.24 E-value=2.8e-10 Score=128.73 Aligned_cols=374 Identities=17% Similarity=0.204 Sum_probs=168.2
Q ss_pred HHHHHh-cCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcccccccccCCCCcccc
Q 043572 382 IKDLLR-KKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSL 460 (997)
Q Consensus 382 i~~Ll~-~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~~l~p~f~~~~~~~~~ 460 (997)
++.|++ .|.+++|.+.++.++.. .+-...|-.++..++|.+|.+.|.+.+ ||....
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~~---------~vWs~La~A~l~~g~~~eAIdsfika~--D~~~y~------------ 65 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNEP---------AVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYM------------ 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHcCC--CHHHHH------------
Confidence 444554 45599999999988542 133356667888999999999998742 322110
Q ss_pred cccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 043572 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTIL 540 (997)
Q Consensus 461 ~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~~~~ 540 (997)
.++.. ... ......+..|+...|+...
T Consensus 66 ------------------~V~~~----------ae~----------------------~g~~EeAi~yl~~ark~~~--- 92 (449)
T 1b89_A 66 ------------------EVVQA----------ANT----------------------SGNWEELVKYLQMARKKAR--- 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------HHHHH----------HHh----------------------CCCHHHHHHHHHHHHHhCc---
Confidence 00000 000 0012223446666655311
Q ss_pred HHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCC
Q 043572 541 VKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWK 620 (997)
Q Consensus 541 ~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~ 620 (997)
...|||.|+.||.++++..++.+|++.+|......+-..+.+.|+|++...+|.+-+++.+--.++.++++-+
T Consensus 93 -~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq------ 165 (449)
T 1b89_A 93 -ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ------ 165 (449)
T ss_dssp -----------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHH------
T ss_pred -cchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHH------
Confidence 1578999999999999988999999988877777777777666666655555555544444444443332110
Q ss_pred CCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHH-h-hhhccCchhhhhhcccccccCCCChhH---HHHH
Q 043572 621 DPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHL-G-WIADINAVLAVKVLTSEKRINQLSPDK---VIAA 695 (997)
Q Consensus 621 d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~-~-wll~~~p~~~l~if~~~~~~~~l~~~~---Vl~~ 695 (997)
.++++.+... +... |+-. . .+...+-+.|...... -...|+. ++..
T Consensus 166 ---------------------~AVea~~KA~---~~~~-Wk~v~~aCv~~~ef~lA~~~~l~----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 166 ---------------------AAVDGARKAN---STRT-WKEVCFACVDGKEFRLAQMCGLH----IVVHADELEELINY 216 (449)
T ss_dssp ---------------------HHHHHHHHHT---CHHH-HHHHHHHHHHTTCHHHHHHTTTT----TTTCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHcC---Cchh-HHHHHHHHHHcCcHHHHHHHHHH----HHhCHhhHHHHHHH
Confidence 0111111111 1111 1110 0 0011111222111110 0022222 2233
Q ss_pred hhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHH
Q 043572 696 IDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQ 774 (997)
Q Consensus 696 L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~ 774 (997)
... ...+.++.|||.-+.-. ..-..+.|.|+.+|. ++-.+|++
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~-----------------------------------ky~p~k~~ 260 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS-----------------------------------KFKPQKMR 260 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH-----------------------------------TTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH-----------------------------------hcCHHHHH
Confidence 322 13356788888876432 334667788877772 46789999
Q ss_pred HHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC---HHHHHHHHhhcCCchHHHHHHHHhcC
Q 043572 775 IFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED---SEAAEQYCAEIGRPDAYMQLLDMYLD 850 (997)
Q Consensus 775 ~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D---~~~Ae~yC~~~~~~~l~~~Ll~~~l~ 850 (997)
+.|+. ++..+..++++.|.+..+|.|.++||-.-++++.|+..++....+ .+.-.+.+.++.+.++|...+.+|+.
T Consensus 261 ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 261 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 99997 789999999999999999999999999999999999999966544 45566778888899999999999995
Q ss_pred CCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHH
Q 043572 851 SQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQG 909 (997)
Q Consensus 851 ~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~ 909 (997)
.. |.. ..+||.--.+.+|+..|++.+-..-.++.+++||..+...++...++.
T Consensus 341 ~~----p~~--l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnea 393 (449)
T 1b89_A 341 FK----PLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 393 (449)
T ss_dssp HC----GGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHH
T ss_pred cC----HHH--HHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHH
Confidence 42 433 666776667899999999999988899999999988876665544443
No 4
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.98 E-value=1e-07 Score=119.44 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhccCchhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCC
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKD 621 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d 621 (997)
..+.|-|-.+|++.++. .+.+-++ -...+.+..+...+.+.+.|.+++.||.+-|++++|+....+-... .|+.
T Consensus 1314 ~gmftELaiLyaKy~pe-klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~----a~~~ 1388 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQ-KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD----AWKE 1388 (1630)
T ss_pred hHHHHHHHHHHHhCCHH-HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh----hhhh
Confidence 46778899999998763 3332221 1246777888888889999999999999999999999876652211 1111
Q ss_pred CcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhcc-C
Q 043572 622 PAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSK-K 700 (997)
Q Consensus 622 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~-~ 700 (997)
+ ..-..+.+..+.+++++-+.+.++..|..--.+++.- ...+|+++++..+.+. +
T Consensus 1389 -----~-----------------~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l--~~rlD~~R~V~l~~~~~~ 1444 (1630)
T 1xi4_A 1389 -----G-----------------QFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL--SPRLDHTRAVNYFSKVKQ 1444 (1630)
T ss_pred -----H-----------------HHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHh--hhcCChHHHHHHHHHcCC
Confidence 0 1113455567889999999999999998766665532 2578999999988754 3
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcC
Q 043572 701 VEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSS 780 (997)
Q Consensus 701 ~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s 780 (997)
-.+...||+.+-. .....+.+.|..+|++ .+..+.|..-+..-
T Consensus 1445 l~lik~yl~~vq~---~n~~~Vneal~el~ie----------------------------------eed~~~Lr~si~~~ 1487 (1630)
T 1xi4_A 1445 LPLVKPYLRSVQN---HNNKSVNESLNNLFIT----------------------------------EEDYQALRTSIDAY 1487 (1630)
T ss_pred hHHhHHHHHHHHH---hcchhhhHHHHHHhcC----------------------------------ccchHHHHHHHhhc
Confidence 3577899998863 2345566666665632 13456677777777
Q ss_pred CCCChHHHHhhccCCCchH---HHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCCCCCCch
Q 043572 781 DLYDPEDVLDLIEGSELWL---EKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEP 857 (997)
Q Consensus 781 ~~yd~~~~L~~~~~~~l~~---e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~~~~~~~ 857 (997)
..||...+..+++.+++.+ -.+++|.|.|++++|+.++- +-+++..|++.+.+.++.++-..||.+++....
T Consensus 1488 ~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k-~d~l~~dAm~~a~~S~d~e~~e~ll~~F~~~~~---- 1562 (1630)
T 1xi4_A 1488 DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEK---- 1562 (1630)
T ss_pred cCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHH-hccCHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----
Confidence 8899999999999988653 45889999999999999999 679999999999999999999999999998732
Q ss_pred hHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHH
Q 043572 858 MFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHH 905 (997)
Q Consensus 858 ~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~ 905 (997)
.+.-...|-...+.+.|..||++-=-+--.+-..+|+++.++++..+
T Consensus 1563 -~E~f~a~Ly~cy~l~~pd~vle~aw~~~~~d~~mPy~i~~~~~~~~~ 1609 (1630)
T 1xi4_A 1563 -RECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK 1609 (1630)
T ss_pred -hhHHHHHHHHHhccCCchHHHHHHHHccCccccchhHHHHHHHHHHH
Confidence 23345666677899999999987644434556779999999988754
No 5
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.51 E-value=5.8e-08 Score=107.87 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCC-CCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCC
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPS-ENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKD 621 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~-~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d 621 (997)
..+=|-|--+|+++.+ +++.+-++. -+.+++..+...+++.+.|.+|+.||.+-.+|+.|......-... .|.
T Consensus 263 mGmFTELaILYsKY~P-eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~----Aw~- 336 (624)
T 3lvg_A 263 MGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD----AWK- 336 (624)
T ss_dssp HHHHHHHHHHHHSSCT-THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHH----HCC-
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChh----hcc-
Confidence 4566778899999987 455544432 357888999999999999999999999999999988765532111 121
Q ss_pred CcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhccC-
Q 043572 622 PAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKK- 700 (997)
Q Consensus 622 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~- 700 (997)
+. .+ -+.+.+..+.+++++-..+-++..|..-.++++.- ...+|+.+|++++.+..
T Consensus 337 h~----~F-----------------kdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL--~prlDh~RvV~~~~k~~~ 393 (624)
T 3lvg_A 337 EG----QF-----------------KDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL--SPRLDHTRAVNYFSKVKQ 393 (624)
T ss_dssp GG----GG-----------------TTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHH--CTTCCSTTTHHHHHTTTC
T ss_pred HH----HH-----------------HHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhc--cccCChHHHHHHHHhcCC
Confidence 11 11 12334456789999999999999998877777542 35799999999998754
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcC
Q 043572 701 VEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSS 780 (997)
Q Consensus 701 ~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s 780 (997)
-.+...||+.+ .+.+.......|-.+||+. +..+.|..-+..-
T Consensus 394 LpLIkpYL~~V---q~~N~~aVNeAln~L~IEE----------------------------------EDy~~LR~SId~y 436 (624)
T 3lvg_A 394 LPLVKPYLRSV---QNHNNKSVNESLNNLFITE----------------------------------EDYQALRTSIDAY 436 (624)
T ss_dssp GGGGTGGGTSC---CCSCCHHHHHHHHHHHHHT----------------------------------TCCHHHHHTTSSC
T ss_pred chhhHHHHHHH---HHhhHHHHHHHHHHHHhhh----------------------------------hhHHHHHHHHHHh
Confidence 33555677655 4555677777776777541 3456677767777
Q ss_pred CCCChHHHHhhccCCCchH---HHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCCCCCCch
Q 043572 781 DLYDPEDVLDLIEGSELWL---EKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEP 857 (997)
Q Consensus 781 ~~yd~~~~L~~~~~~~l~~---e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~~~~~~~ 857 (997)
.+||.-.+-.+++.+.|.+ -.++||.|.+++++|+.+.- +-+.|..|++++...++.++-..||+++++..+
T Consensus 437 dNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K-kDklykDAietAa~S~~~elaeeLL~yFv~~g~---- 511 (624)
T 3lvg_A 437 DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEK---- 511 (624)
T ss_dssp CCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS-TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCS----
T ss_pred ccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH-hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCc----
Confidence 8999999999999998754 46899999999999999887 557899999999999999999999999997643
Q ss_pred hHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHH
Q 043572 858 MFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHH 905 (997)
Q Consensus 858 ~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~ 905 (997)
.+.-...|-...+.+.|..||++-=-+--.+-..+|+++++++++.+
T Consensus 512 -~EcF~a~LytCYdLlrpDvVlElaW~~~l~D~~mPY~Iq~~re~~~k 558 (624)
T 3lvg_A 512 -RECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK 558 (624)
T ss_dssp -THHHHHHHHHTSSSSSCHHHHHHHHHSCSSSCCCCSSTTTTTTHHHH
T ss_pred -hHHHHHHHHHHhhccChHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 23345666678899999999987432222344567777888877654
No 6
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.17 E-value=0.02 Score=70.82 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=93.2
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec--ccCcEEEE
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD--DVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~--~~~~lLv~ 106 (997)
..|+|++.. ++.|+.|+.+|.+..|.+..... ...+.. -...+|..+...| +...++++
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-------------~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-------------NFTLTT---GQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-------------SEEEEC---CCTTCCCEEEECCSTTCCEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------eeEEec---CCCCCEEEEEEEECCCCCEEEEE
Confidence 568888864 45799999999999998864331 011111 1336889998888 77756665
Q ss_pred ecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 107 FCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
-.||+|.+|++..-.++..+. ....++.++..+
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---------------------------------------------- 238 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP---------------------------------------------- 238 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS----------------------------------------------
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC----------------------------------------------
Confidence 557899999987644433221 122344444322
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC----EEEEEECCcEEEEEecCC
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND----SIIVGTVNGYSLFSCVTG 253 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~----~l~vg~~~~y~lidl~~g 253 (997)
++ ..++++. ...|.+|....+. ..+.+.. .+.+.+++|..+ .+..|...+..++++.++
T Consensus 239 ------~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 239 ------TL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp ------SS-SEEEEEETTSCEEEEETTTCS--EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred ------CC-CEEEEEeCCCeEEEEECCCCc--EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 11 1344444 3568887766542 3333333 356788988854 377778888888887644
No 7
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.02 E-value=0.003 Score=71.40 Aligned_cols=237 Identities=10% Similarity=0.046 Sum_probs=138.4
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
.+.+++..+++++.|+.+|.+..|....... ...... -...+|..+...|+.+.++++-.||.|
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~--------------~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i 158 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSV--------------SALAET--DESTYVASVKWSHDGSFLSVGLGNGLV 158 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCE--------------EEEEEC--CTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCcE--------------eEeeec--CCCCCEEEEEECCCCCEEEEECCCCeE
Confidence 4567787788999999999999998865431 111110 145689999999988877776668999
Q ss_pred EEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccccc
Q 043572 113 FLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHC 191 (997)
Q Consensus 113 ~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 191 (997)
.+|++..-+.+..+. ....+..++.+
T Consensus 159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~----------------------------------------------------- 185 (401)
T 4aez_A 159 DIYDVESQTKLRTMAGHQARVGCLSWN----------------------------------------------------- 185 (401)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEE-----------------------------------------------------
T ss_pred EEEECcCCeEEEEecCCCCceEEEEEC-----------------------------------------------------
Confidence 999987654332221 11223333321
Q ss_pred CCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCCCC
Q 043572 192 RGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSC 266 (997)
Q Consensus 192 ~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~ 266 (997)
+. .++.+ ....|.+|....... ....+. ....+.++.|.. ..++.|.. +...++|+.++.....+......
T Consensus 186 -~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~- 261 (401)
T 4aez_A 186 -RH-VLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA- 261 (401)
T ss_dssp -TT-EEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC-
T ss_pred -CC-EEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce-
Confidence 11 23333 344577777653211 112221 345789999974 45777765 67889999876544434322111
Q ss_pred CCceEEcCCCCeEEEEe----CCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEE---CCeEEEEecCCCceE
Q 043572 267 PPMLKLLSKEQKVLLLV----DNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLR---GGKMELYHKKSGICV 336 (997)
Q Consensus 267 ~p~i~~~~~~~e~Ll~~----~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~---~~~ieI~~~~~~~lv 336 (997)
-..+..-+.++.++++. |+...+.|. .|.+.+ ++.-......+.+. .+++++.. ++.|.|+++.++...
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN-TVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE-EEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE-EEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 11222223333455442 556666675 344332 23323334455553 56777764 689999999998777
Q ss_pred EEEecCC
Q 043572 337 QAVTFGG 343 (997)
Q Consensus 337 Q~i~~~~ 343 (997)
+...+++
T Consensus 341 ~~~~~~~ 347 (401)
T 4aez_A 341 KQVDIPA 347 (401)
T ss_dssp EEEEEEC
T ss_pred eEEEecC
Confidence 7665543
No 8
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.0094 Score=65.41 Aligned_cols=239 Identities=14% Similarity=0.053 Sum_probs=135.6
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...+. -...+|..+...|+.+.++.+-.
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~---~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--------------LGTLD---GHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--------------hhhhh---hcCCcEEEEEEcCCCCEEEEEeC
Confidence 3578888864 56899999999999998764321 11111 15668999999998886766566
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|++|++|++...+.+........+..++..+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------- 125 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSP------------------------------------------------- 125 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECT-------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEeecCCCeEEEEEcc-------------------------------------------------
Confidence 8899999998765444333233344444322
Q ss_pred cccCCceEEEEEEC------ceEEEEEEeCCe----EEE-----EEeEec-C--CcceEEEEeC--CEEEEEEC-CcEEE
Q 043572 189 QHCRGDNVFAVIIG------KRLVLIELVNGS----FVI-----LKEIQC-M--DGVKTMVWLN--DSIIVGTV-NGYSL 247 (997)
Q Consensus 189 ~~~~~~~~l~Va~k------kki~i~~~~~~~----~~~-----~kei~~-~--~~~~~l~~~~--~~l~vg~~-~~y~l 247 (997)
++ ..++++.. ..|.+|.+..+. +.. ...+.. . ..+.+++|.. +.+++|.. ....+
T Consensus 126 ---~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 126 ---CG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ---TS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred ---CC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 11 23444444 467788776441 111 111111 1 1678888873 46777766 46889
Q ss_pred EEecC-CcceeeecCCCCCCCCceEEcCCCCeEEE-Ee-CCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE
Q 043572 248 FSCVT-GQSGVIFTLPDVSCPPMLKLLSKEQKVLL-LV-DNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR 321 (997)
Q Consensus 248 idl~~-g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~ 321 (997)
+|+.+ +.....+.... .......+..++.+|+ +. |+...+.|.. |...+ .+.-......+.+. ..++++..
T Consensus 202 ~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 202 YDVSNNYEYVDSIDLHE--KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK-KYETDCPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp EETTTTTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEECSSSSEEEEEE
T ss_pred EECCCCcEeEEEEecCC--CceeEEEECCCCCEEEEecCCceEEEEECCCCceee-eecCCCCceeEEecCCCceEEEee
Confidence 99986 44333333221 1111223332334444 43 4566666653 33322 22222222333332 34666554
Q ss_pred C-C--------------eEEEEecCCCceEEEEecC
Q 043572 322 G-G--------------KMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 322 ~-~--------------~ieI~~~~~~~lvQ~i~~~ 342 (997)
. + .+.+++..++..++.+.-.
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 3 2 6888899899888887643
No 9
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.88 E-value=0.00068 Score=76.71 Aligned_cols=202 Identities=14% Similarity=0.193 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhccCchhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCC
Q 043572 544 GVDTLLMYLYRALNRVHDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDP 622 (997)
Q Consensus 544 ~vDT~Ll~~y~~~~~~~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~ 622 (997)
.+=|-|-.+|++.++. .+.+-++ --+.+.+..+...+.+...|.+++.||...++|+.|..+..+-.. ..|..
T Consensus 242 ~~ftel~il~~ky~p~-k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~----~a~~~- 315 (449)
T 1b89_A 242 GMFTELAILYSKFKPQ-KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT----DAWKE- 315 (449)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT----TTCCH-
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh----hhhhh-
Confidence 4456678889998753 3332221 136789999999999999999999999999999999987765211 11211
Q ss_pred cccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhccC-h
Q 043572 623 AVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKK-V 701 (997)
Q Consensus 623 ~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~-~ 701 (997)
+ ...+.+.+..+.+++++-+.+-++..|..--.+++.- ...+|+++++.++.... -
T Consensus 316 ----~-----------------~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l--~~~ld~~r~v~~~~~~~~l 372 (449)
T 1b89_A 316 ----G-----------------QFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL--SPRLDHTRAVNYFSKVKQL 372 (449)
T ss_dssp ----H-----------------HHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHH--GGGCCHHHHHHHHHHTTCT
T ss_pred ----H-----------------HHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHH--HhccCcHHHHHHHHHcCCc
Confidence 1 1123344456789999999999999998755555432 35799999999987643 3
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCC
Q 043572 702 EILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSD 781 (997)
Q Consensus 702 ~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~ 781 (997)
.+...||+.+-. .+...+...|-.+||+ ++..+.|..-+..-.
T Consensus 373 ~l~~~yl~~v~~---~n~~~vnealn~l~ie----------------------------------eed~~~lr~si~~~~ 415 (449)
T 1b89_A 373 PLVKPYLRSVQN---HNNKSVNESLNNLFIT----------------------------------EEDYQALRTSIDAYD 415 (449)
T ss_dssp TTTHHHHHHHHT---TCCHHHHHHHHHHHHH----------------------------------TTCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHHHh----------------------------------hhhHHHHHHHHHHhc
Confidence 577899987743 4456777777777754 145677777788889
Q ss_pred CCChHHHHhhccCCCchH---HHHHHHHhhcch
Q 043572 782 LYDPEDVLDLIEGSELWL---EKAILYRKLGQE 811 (997)
Q Consensus 782 ~yd~~~~L~~~~~~~l~~---e~~~Ll~klg~h 811 (997)
+||.-.+-.+++.+.|.+ -.++||.|.+++
T Consensus 416 nfd~~~l~~~le~h~l~~~r~iaa~~~~~~~~~ 448 (449)
T 1b89_A 416 NFDNISLAQRLEKHELIEFRRIAAYLFKGNNRW 448 (449)
T ss_dssp CSCHHHHHHHHTTCSSHHHHHHHHHHHC-----
T ss_pred CcCHHHHHHHHhcCchHHHHHHHHHHHHhccCC
Confidence 999999999999998755 358888887765
No 10
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.80 E-value=0.003 Score=69.43 Aligned_cols=244 Identities=10% Similarity=0.041 Sum_probs=139.6
Q ss_pred ceeeeeEEeecC-----CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEE
Q 043572 30 RSLSISPISDCQ-----VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVL 104 (997)
Q Consensus 30 ~~~~I~ci~~~~-----~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lL 104 (997)
....|+|++... +.|+.|+.+|.+..|.+..... .....+. -...+|..+...|+.+.++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~---~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------TIPKAQQ---MHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC------------EEEEEEE---ECSSCEEEEEECTTSSEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc------------eeEEEec---cccCCEEEEEECcCCCEEE
Confidence 346899999763 5799999999999999975321 0111111 2567899999999888777
Q ss_pred EEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 105 LLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
++-.||+|.+|++..-+..........++.++..+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------------------- 138 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-------------------------------------------- 138 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEEC--------------------------------------------
T ss_pred EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeC--------------------------------------------
Confidence 756689999999876543322222223333333110
Q ss_pred hhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 185 KEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
.++ ..++++. ...|.+|.+..+ .....+..+..+.++.+.++.++++.. ....++|+.++.........
T Consensus 139 ------~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 209 (368)
T 3mmy_A 139 ------PNY-SCVMTGSWDKTLKFWDTRSS--NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209 (368)
T ss_dssp ------SSC-EEEEEEETTSEEEEECSSCS--SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCC
T ss_pred ------CCC-CEEEEccCCCcEEEEECCCC--cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccc
Confidence 011 2344444 456778776554 233445567778888889888777744 57888998754322111111
Q ss_pred CCCCCC-ceEEcCCC----CeEEEEe-CCeEEEEccCCCcc-cc--ccccCC-------------CCCeEEEe--CcEEE
Q 043572 263 DVSCPP-MLKLLSKE----QKVLLLV-DNVGVFVDAHGQPV-GG--SLVFRK-------------SPDAVGEL--SMYVV 318 (997)
Q Consensus 263 ~~~~~p-~i~~~~~~----~e~Ll~~-~~~g~fv~~~G~~~-r~--~i~w~~-------------~P~~i~~~--~PYll 318 (997)
...... .+...... ..++.+. |+...+.+...... .. ++.... ....+++. ..|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 289 (368)
T 3mmy_A 210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289 (368)
T ss_dssp SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence 111111 22222111 1144444 44455555543211 11 222211 23344443 33777
Q ss_pred EEE-CCeEEEEecCCCceEEEEec
Q 043572 319 VLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 319 ~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
+.. ++.|.|+++.++..++++.-
T Consensus 290 s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 290 TVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp EEETTSCEEEEETTTTEEEEECCC
T ss_pred EEccCCeEEEEECCCCcEEEEecC
Confidence 665 67899999999999888754
No 11
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.80 E-value=0.0037 Score=69.92 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=142.8
Q ss_pred ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc----c---Cc
Q 043572 30 RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD----V---GK 102 (997)
Q Consensus 30 ~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~----~---~~ 102 (997)
....|+|++...+.|+.|+.+|.+..|.......... ......+. -...+|..+...|+ . ..
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~--------~~~~~~~~---~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP--------KDKSYSHF---VHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG--------GGGEEEEE---CCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC--------CCcceEEe---cCCCcEEEEEEecccccCCccccE
Confidence 3457899998888999999999999999876542100 00111111 25678999999998 6 65
Q ss_pred EEEEecCCeEEEeecCcccc-----ccccccc------cceEEEEeecccCCccccccccccccccccccCCcccchhhh
Q 043572 103 VLLLFCDQCLFLTDSLLTQP-----LKKLGFL------KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQ 171 (997)
Q Consensus 103 lLv~l~d~~l~~~~l~~l~~-----~~~~~~~------kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 171 (997)
++.+-.|+.|++|++..-.. ...+... ..+..++..+..
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------ 133 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN------------------------------ 133 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------------------------------
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc------------------------------
Confidence 55545588999999876543 2222111 233333332000
Q ss_pred hccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeC------C-eEE--EEEeEe--------cCCcceEEEEe
Q 043572 172 KFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVN------G-SFV--ILKEIQ--------CMDGVKTMVWL 233 (997)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~------~-~~~--~~kei~--------~~~~~~~l~~~ 233 (997)
..++...++++. ...|.+|.+.. + ... ....+. ....+.++.|.
T Consensus 134 ------------------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 195 (397)
T 1sq9_A 134 ------------------DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 195 (397)
T ss_dssp ----------------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred ------------------CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC
Confidence 001223144444 45688888876 3 111 111221 24567999998
Q ss_pred CC-EEEEEEC-CcEEEEEecCCcceeeecCC-CC---CCCCceEEcCCCCeEEEE-e-C---CeEEEEcc-CCCcccccc
Q 043572 234 ND-SIIVGTV-NGYSLFSCVTGQSGVIFTLP-DV---SCPPMLKLLSKEQKVLLL-V-D---NVGVFVDA-HGQPVGGSL 301 (997)
Q Consensus 234 ~~-~l~vg~~-~~y~lidl~~g~~~~l~~~~-~~---~~~p~i~~~~~~~e~Ll~-~-~---~~g~fv~~-~G~~~r~~i 301 (997)
.+ .+++|.. ....++|+.++.....+... +. ........+..++.+|++ . + +...+.|. .|.+.+ .+
T Consensus 196 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~ 274 (397)
T 1sq9_A 196 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SL 274 (397)
T ss_dssp TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EE
T ss_pred CCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-ee
Confidence 54 6666654 46888999877655555430 01 111222233323344444 3 3 35555664 444332 12
Q ss_pred c--------------cCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEEEe
Q 043572 302 V--------------FRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 302 ~--------------w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~i~ 340 (997)
. -......+.+. ..|+++.. ++.|.|+++.++..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 1 12233455554 55777665 5789999999999999987
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.79 E-value=0.0084 Score=74.32 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=141.7
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...+. ....+|..+...|+.+.++++-.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--------------~~~~~---~~~~~v~~~~~s~~~~~l~~~~~ 75 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--------------VRSIQ---VTETPVRAGKFIARKNWIIVGSD 75 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------------EEEEE---CCSSCEEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce--------------EEEEe---cCCCcEEEEEEeCCCCEEEEEeC
Confidence 4578888865 66899999999999998764321 11111 25678999999999997777666
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
||.|.+|++..-+.+..+. ....++.++..+
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------------------ 107 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP------------------------------------------------ 107 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECS------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEeC------------------------------------------------
Confidence 8899999987655433222 122244444322
Q ss_pred ccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 188 EQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 188 ~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++ ..++++.. ..|.+|.+..+. ...+.+. ....+.++.|.. +.++.|.. ....++|+.++.....+..
T Consensus 108 ----~~-~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 108 ----TK-PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp ----SS-SEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred ----CC-CEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence 11 13455544 468888887651 2222222 345689999974 35777765 4688899877655444443
Q ss_pred CCCCCCCceEEcC-CCCeEEEE-e-CCeEEEEccC-CCccccccccCCCC-CeEEEe--CcEEEEEE-CCeEEEEecCCC
Q 043572 262 PDVSCPPMLKLLS-KEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRKSP-DAVGEL--SMYVVVLR-GGKMELYHKKSG 333 (997)
Q Consensus 262 ~~~~~~p~i~~~~-~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~~P-~~i~~~--~PYll~~~-~~~ieI~~~~~~ 333 (997)
.....-..+...+ +++.++++ . ++...+.+.. |.+.+ ++.....+ ..+++. .+++++.. ++.|.|+++.++
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 2211111222222 13344444 3 3455555643 33221 23222222 233433 34777666 578999999999
Q ss_pred ceEEEEecCC
Q 043572 334 ICVQAVTFGG 343 (997)
Q Consensus 334 ~lvQ~i~~~~ 343 (997)
..++++....
T Consensus 261 ~~~~~~~~~~ 270 (814)
T 3mkq_A 261 KVEKTLNVGL 270 (814)
T ss_dssp SEEEEECCSS
T ss_pred cEEEEeecCC
Confidence 9988886543
No 13
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.73 E-value=0.022 Score=61.58 Aligned_cols=241 Identities=10% Similarity=0.067 Sum_probs=136.0
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+ +|.+..|.+....... ........ -...+|..+...|+.+.++++-.|
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~--------~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d 118 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--------PVSQLDCL----NRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--------CSEEEECS----CTTSBEEEEEECTTSSEEEEEESS
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee--------eeeccccc----CCCCcEEEEEEcCCCCEEEEEcCC
Confidence 467887754 45677887 9999999987543210 00111100 145689999999988877775668
Q ss_pred CeEEEeecCcccccc--ccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 QCLFLTDSLLTQPLK--KLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~--~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
+.|.+|++..-++.. ... ....++.++..+
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------------------------------- 151 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISP----------------------------------------------- 151 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECT-----------------------------------------------
T ss_pred CcEEEEECCCCCcceeeecccCCCceEEEEECC-----------------------------------------------
Confidence 999999987643211 111 111233333221
Q ss_pred cccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 187 EEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++ ..++++. ...|.+|....++ ..+.+. ....+.++.|.. +.++.|.. ....++|+.++.....+..
T Consensus 152 -----~~-~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 223 (337)
T 1gxr_A 152 -----DS-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223 (337)
T ss_dssp -----TS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred -----CC-CEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC
Confidence 11 2344444 3567888776543 233333 245678999973 46777765 4678899988876555543
Q ss_pred CCCCCCCceEEc-CCCCeEEEEe-CCeEEEEccCCCccccccccCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceE
Q 043572 262 PDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICV 336 (997)
Q Consensus 262 ~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lv 336 (997)
.. ......+ +++..++++. ++...+++..+........-...+..+.+. ..++++.. ++.|.|+++.++..+
T Consensus 224 ~~---~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 224 TS---QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SS---CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CC---ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 22 1222233 3333444444 445555665432211111112334455554 45777665 578999999999888
Q ss_pred EEEecCC
Q 043572 337 QAVTFGG 343 (997)
Q Consensus 337 Q~i~~~~ 343 (997)
.......
T Consensus 301 ~~~~~~~ 307 (337)
T 1gxr_A 301 FQSKESS 307 (337)
T ss_dssp EEEECSS
T ss_pred EEecCCC
Confidence 6665443
No 14
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.73 E-value=0.013 Score=67.22 Aligned_cols=239 Identities=10% Similarity=-0.011 Sum_probs=137.7
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
-++|+...++.|+.|+.||.+..|....... ...++ -...+|..+...|+. .++.+-.||+|
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~--------------~~~~~---~h~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINKKF--------------LLQLS---GHDGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEE--------------EEEEC---CCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCCCcE--------------EEEEe---CCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 3688888899999999999999998764321 11111 156689999987766 56665678999
Q ss_pred EEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccccc
Q 043572 113 FLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHC 191 (997)
Q Consensus 113 ~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 191 (997)
.+|++..-+++.... -...++.++..+..
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-------------------------------------------------- 215 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-------------------------------------------------- 215 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESS--------------------------------------------------
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCC--------------------------------------------------
Confidence 999987654433221 12233333332100
Q ss_pred CCceEEEEEE-CceEEEEEEeCCeEE---------------------EEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEE
Q 043572 192 RGDNVFAVII-GKRLVLIELVNGSFV---------------------ILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSL 247 (997)
Q Consensus 192 ~~~~~l~Va~-kkki~i~~~~~~~~~---------------------~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~l 247 (997)
++ ..++++. ...|.+|........ ....+. ....+.++...++.++.|.. ....+
T Consensus 216 ~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 216 NI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp SC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEE
Confidence 11 2233333 345667666543211 011111 22356778888888888864 57889
Q ss_pred EEecCCcceeeecCCCCCCCCceEEc-CCCCeEEEEe-CCeEEEEcc-CCCcccccccc-CCCCCeEEEeCcEEEEEE-C
Q 043572 248 FSCVTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVF-RKSPDAVGELSMYVVVLR-G 322 (997)
Q Consensus 248 idl~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~~PYll~~~-~ 322 (997)
+|+.++.....+.... .......+ ++++.++.+. |+...+.|. .|.+.+ ++.- ......+.+...++++.. +
T Consensus 295 wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~s~d 371 (464)
T 3v7d_B 295 WDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY-TLQGHTALVGLLRLSDKFLVSAAAD 371 (464)
T ss_dssp EETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECSSEEEEEETT
T ss_pred EECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-EEeCCCCcEEEEEEcCCEEEEEeCC
Confidence 9998776544443211 11112223 3333444443 455556664 454432 2221 223446677767887765 5
Q ss_pred CeEEEEecCCCceEEEEecCC
Q 043572 323 GKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 323 ~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+.|.|.++.++..........
T Consensus 372 g~v~vwd~~~~~~~~~~~~~~ 392 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYHHTN 392 (464)
T ss_dssp SEEEEEETTTCCEEEEEECTT
T ss_pred CcEEEEECCCCceeeeecCCC
Confidence 789999999988776665443
No 15
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.71 E-value=0.0094 Score=64.52 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=101.2
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|.+...... ...... -...+|..+...|+.+.++++-.
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------------~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------------IKAELT---SSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------------EEEEEE---CSSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc------------eeeecc---cCCCceEEEEECCCCCEEEEEeC
Confidence 3578888865 557999999999999988754310 111111 14568999999998886777556
Q ss_pred CCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|++...++...+.. ...++.++..+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------------------ 193 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISN------------------------------------------------ 193 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECT------------------------------------------------
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECC------------------------------------------------
Confidence 88999999977554433221 22344444322
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceee
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVI 258 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l 258 (997)
++ ..++++. ...|.+|....++ ....+..+..+.++.|. ++.+++|.. ....++|+.++....+
T Consensus 194 ----~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 194 ----DG-TKLWTGGLDNTVRSWDLREGR--QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp ----TS-SEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ----CC-CEEEEEecCCcEEEEECCCCc--eEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 11 1344444 4467787776543 33445567788999997 346777764 5688999987765443
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.71 E-value=0.027 Score=60.62 Aligned_cols=236 Identities=13% Similarity=0.062 Sum_probs=134.4
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...+. -...+|..+...|+.+.++.+-.
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--------------~~~~~---~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--------------EKTIS---GHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--------------chhhc---cCCCceEEEEEcCCCCEEEEECC
Confidence 3578888864 56799999999999998754321 11111 25668999999999886766566
Q ss_pred CCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.|.+|++..-.++..+.. ...+..++..+
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------ 117 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------------------------------------------ 117 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECS------------------------------------------------
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC------------------------------------------------
Confidence 88999999876544322211 11122222221
Q ss_pred ccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++. .++.+ ....|.+|....+. ..+.+.. ...+.++.|.. ..++.|.. ....++|+.+++....+...
T Consensus 118 ----~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 118 ----QSN-LIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp ----SSS-EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred ----CCC-EEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence 111 23333 44567888776543 2233332 34678898874 45777754 56889999877654433322
Q ss_pred CCCCCC-ceEEcCCCCeEEEE-e-CCeEEEEccC-CCccccccccCC---CCCeEEEe---CcEEEEEE-CCeEEEEecC
Q 043572 263 DVSCPP-MLKLLSKEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRK---SPDAVGEL---SMYVVVLR-GGKMELYHKK 331 (997)
Q Consensus 263 ~~~~~p-~i~~~~~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~---~P~~i~~~---~PYll~~~-~~~ieI~~~~ 331 (997)
. ..+ ....+..++.+|++ . |+...+.|.. |...+ .+.-.. ......+. ..|+++-. ++.|.|.++.
T Consensus 191 ~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 191 D--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp S--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred C--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 1 112 12334434455554 3 4556666653 33221 111110 11112222 33555544 5789999999
Q ss_pred CCceEEEEec
Q 043572 332 SGICVQAVTF 341 (997)
Q Consensus 332 ~~~lvQ~i~~ 341 (997)
++.+++++.-
T Consensus 268 ~~~~~~~~~~ 277 (312)
T 4ery_A 268 TKEIVQKLQG 277 (312)
T ss_dssp TCCEEEEECC
T ss_pred Cchhhhhhhc
Confidence 9999998854
No 17
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.69 E-value=0.012 Score=67.26 Aligned_cols=265 Identities=12% Similarity=0.107 Sum_probs=136.2
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
.++|+...++.|+.|+.+|.+..|.......-. .+.. ...+|..+..- .+.++.+-.||+|
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~-------------~~~~----h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-------------TLVG----HTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCEEE-------------ECCC----CSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCcEEE-------------EEcC----CCCCEEEEEec--CCEEEEEeCCCeE
Confidence 477888888888888888888888886665210 0001 23455555554 3456666677777
Q ss_pred EEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc-cc-cCCccchhccc
Q 043572 113 FLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG-IK-ANGVKVKEEEQ 189 (997)
Q Consensus 113 ~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~-~~g~~~~~~~~ 189 (997)
++|++..-+++..+. ....+..++.+... ++.+. .....+++...++. +. ..|-.......
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------l~s~s---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLHEKR-------VVSGS---------RDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTE-------EEEEE---------TTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEecCCE-------EEEEe---------CCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 777766554433221 12223333333211 00000 00000000000000 00 00000000000
Q ss_pred ccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCC
Q 043572 190 HCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSC 266 (997)
Q Consensus 190 ~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~ 266 (997)
..++.. ++++. ...|.+|....+. ..+++. ....+.++.|.+..++.|.. +...++|+.++.....+....
T Consensus 246 ~~~~~~-l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--- 319 (445)
T 2ovr_B 246 QYDGRR-VVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--- 319 (445)
T ss_dssp EECSSC-EEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC---
T ss_pred EECCCE-EEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc---
Confidence 001222 34443 4557777766542 333333 23567999998888888864 578899998886554443221
Q ss_pred CCceEEcC-CCCeEEEEe-CCeEEEEcc-CCCccccccc----cCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEE
Q 043572 267 PPMLKLLS-KEQKVLLLV-DNVGVFVDA-HGQPVGGSLV----FRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQA 338 (997)
Q Consensus 267 ~p~i~~~~-~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~----w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~ 338 (997)
..+..+. +++.++.+. |+...+.|. .|.+.+ ++. -......+.+...|+++.+ ++.|.|+++.+++.+++
T Consensus 320 -~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 320 -SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ-TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 397 (445)
T ss_dssp -SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE-EECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred -ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEE-EEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeee
Confidence 2222221 233444443 455666665 455432 222 2233456777777888766 67899999999999998
Q ss_pred Ee
Q 043572 339 VT 340 (997)
Q Consensus 339 i~ 340 (997)
+.
T Consensus 398 ~~ 399 (445)
T 2ovr_B 398 LV 399 (445)
T ss_dssp EE
T ss_pred ee
Confidence 84
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.68 E-value=0.023 Score=64.95 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=82.1
Q ss_pred EEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEEc
Q 043572 197 FAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 197 l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~ 273 (997)
++++. ...|.+|....+... +.+. ....+.++.|.++.++.|.. ....++|+.++.....+.... ..+..+
T Consensus 212 l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~ 285 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQCL--HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSL 285 (445)
T ss_dssp EEEEETTSEEEEEESSSCCEE--EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEE
T ss_pred EEEEeCCCEEEEEECCCCcEE--EEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCC----CceEEE
Confidence 44444 445778777654322 2222 24567899998888888865 568899998776544443211 122222
Q ss_pred C-CCCeEEEEe-CCeEEEEcc-CCCccccccc-cCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 274 S-KEQKVLLLV-DNVGVFVDA-HGQPVGGSLV-FRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 274 ~-~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~-w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
. ++..++.+. |+...+.|. .|.+.+ ++. -......+.+...++++.. ++.|.|+++.++..++++..+
T Consensus 286 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 358 (445)
T 2ovr_B 286 QFDGIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 358 (445)
T ss_dssp EECSSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred EECCCEEEEEeCCCeEEEEECCCCCEEE-EEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence 1 333444443 455556664 444432 111 1223345666777877665 678999999999999988753
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.66 E-value=0.032 Score=60.15 Aligned_cols=240 Identities=10% Similarity=0.020 Sum_probs=136.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|....... ...+. ....+|..+...|+.+.++.+-.|
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--------------~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--------------VRSIQ---VTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------------EEEEE---CCSSCEEEEEEEGGGTEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--------------eEEee---ccCCcEEEEEEeCCCCEEEEECCC
Confidence 468888864 66799999999999998864321 11111 256789999999999977776678
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
++|++|++..-+++..+.. ...|..++..+
T Consensus 77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------------------------------------------- 107 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP------------------------------------------------- 107 (304)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECS-------------------------------------------------
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-------------------------------------------------
Confidence 8999999876544322211 12244444322
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++ ..++.+. .+.|.+|.+..+. ...+.+. -...+.+++|.. ..++.|.. ....+.|+.++.....+...
T Consensus 108 ---~~-~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~ 182 (304)
T 2ynn_A 108 ---TK-PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (304)
T ss_dssp ---SS-SEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred ---CC-CEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC
Confidence 11 1234443 4568888876541 1112222 234678999973 34666654 56888998765433222222
Q ss_pred CCCCCCceEEcC-CCCeEEEE-e-CCeEEEEccC-CCccccccccCCCCC-eEEEe--CcEEEEEE-CCeEEEEecCCCc
Q 043572 263 DVSCPPMLKLLS-KEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRKSPD-AVGEL--SMYVVVLR-GGKMELYHKKSGI 334 (997)
Q Consensus 263 ~~~~~p~i~~~~-~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~~P~-~i~~~--~PYll~~~-~~~ieI~~~~~~~ 334 (997)
....-..+...+ .++.+|++ . |+...+.|.. |.... ++.-...+. .+++. .++|+.-. ++.|.|.++.++.
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce-eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 111111122222 23345544 3 4555556643 32221 222222222 23332 35676655 5789999999999
Q ss_pred eEEEEecCC
Q 043572 335 CVQAVTFGG 343 (997)
Q Consensus 335 lvQ~i~~~~ 343 (997)
+++++....
T Consensus 262 ~~~~~~~~~ 270 (304)
T 2ynn_A 262 VEKTLNVGL 270 (304)
T ss_dssp EEEEECCSS
T ss_pred eeeeccCCC
Confidence 999986543
No 20
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.60 E-value=0.0037 Score=70.59 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=102.7
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
...|.|++..++.|+.|+.+|.+..|.+..... ...... -...+|..+...|+.+.++++-.|+
T Consensus 176 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-------------QIGTLQ---GHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------EEEEEE---CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEECCCEEEEEcCCCCEEEEecccCcc-------------eeeEEc---CCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 457889998888999999999999998874321 111111 1566899999999888666655689
Q ss_pred eEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
.|++|++....+..... ....++.++..+
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-------------------------------------------------- 269 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCP-------------------------------------------------- 269 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECT--------------------------------------------------
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECC--------------------------------------------------
Confidence 99999997755433221 112233333322
Q ss_pred ccCCceEEEEEE---CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE---CCcEEEEEecCCcceeeec
Q 043572 190 HCRGDNVFAVII---GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT---VNGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 190 ~~~~~~~l~Va~---kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~---~~~y~lidl~~g~~~~l~~ 260 (997)
++...++.+. .+.|.+|....+ ...+.+.....+.++.|.. ..++++. .....++|+.++.....+.
T Consensus 270 --~~~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~ 344 (401)
T 4aez_A 270 --WQSNLLATGGGTMDKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD 344 (401)
T ss_dssp --TSTTEEEEECCTTTCEEEEEETTTC--CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE
T ss_pred --CCCCEEEEecCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE
Confidence 1112333332 567888877654 3334455677889999974 4466643 5678899998776555543
No 21
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.52 E-value=0.0086 Score=65.24 Aligned_cols=242 Identities=13% Similarity=0.033 Sum_probs=136.2
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEEEe
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv~l 107 (997)
...|+|++.. ++.|+.|+.+|.+..|.+...... ....... -...+|..+...|+.+ .++++-
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQSL----RYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEEE----ECSSCEEEEEEEESSSEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccceeee----ecCCceEEEEECCCCCcEEEEEc
Confidence 3567887754 668999999999999998754310 0011111 1567899999999877 677766
Q ss_pred cCCeEEEeec-Cccccccccc--cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 108 CDQCLFLTDS-LLTQPLKKLG--FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 108 ~d~~l~~~~l-~~l~~~~~~~--~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
.||.|++|++ ..-....-.. ....++.++..+
T Consensus 77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--------------------------------------------- 111 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--------------------------------------------- 111 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET---------------------------------------------
T ss_pred CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC---------------------------------------------
Confidence 7899999998 6543211011 122233333321
Q ss_pred hhcccccCCceEEEEE-ECceEEEEEEeC---Ce----EEEEEeEecCCcceEEEEeCCEEEEEECC-cEEEEEecC-Cc
Q 043572 185 KEEEQHCRGDNVFAVI-IGKRLVLIELVN---GS----FVILKEIQCMDGVKTMVWLNDSIIVGTVN-GYSLFSCVT-GQ 254 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va-~kkki~i~~~~~---~~----~~~~kei~~~~~~~~l~~~~~~l~vg~~~-~y~lidl~~-g~ 254 (997)
+ ..++.+ ..+.|.+|.+.. +. ....+.+..+..+.++.|.++.+++|... ...++|+.+ +.
T Consensus 112 --------~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 112 --------D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp --------T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT
T ss_pred --------C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc
Confidence 1 123333 344567766543 00 22233444667889999999888888665 889999987 54
Q ss_pred ceee-ecCCCCCCCCceEEc-C-CCCeEEEEeCC-eEEEEccCCC--c--ccc--ccccCC----------CCCeEEEe-
Q 043572 255 SGVI-FTLPDVSCPPMLKLL-S-KEQKVLLLVDN-VGVFVDAHGQ--P--VGG--SLVFRK----------SPDAVGEL- 313 (997)
Q Consensus 255 ~~~l-~~~~~~~~~p~i~~~-~-~~~e~Ll~~~~-~g~fv~~~G~--~--~r~--~i~w~~----------~P~~i~~~- 313 (997)
.... ..... ........+ + ++..++.+..+ ...+.+.+.. . .+. .+.-.. ....+.+.
T Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 183 DNGTIEESGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CCCEEEECSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred ccceeeecCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 3211 11111 111222233 3 34345555443 4444333222 1 011 221111 23344443
Q ss_pred -CcEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 314 -SMYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 314 -~PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
..||++.. ++.|.|+++.++..+.++.-
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred CCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 45777665 56899999999998888654
No 22
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.50 E-value=0.062 Score=59.67 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=141.6
Q ss_pred eeeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEEEE
Q 043572 31 SLSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lLv~ 106 (997)
...|+|++... +.|+.|+.+|.+..|........ ....... ...+|..+...| +.+.++.+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~----h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-----------SFIQGMG----PGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-----------EEECCCS----TTCBEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-----------eeeecCC----cCCceeEEEeCCCCCCEEEEE
Confidence 35788988653 57999999999999998754320 0111001 456899999999 55655555
Q ss_pred ecCCeEEEeecCccccccccccc----cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFL----KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~----kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
-.|+.|++|++.. ......... ..+..++..+
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------- 173 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV------------------------------------------- 173 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-------------------------------------------
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-------------------------------------------
Confidence 5688999999874 111111111 1233333322
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC---EEEEEEC-CcEEEEEecCCc---
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND---SIIVGTV-NGYSLFSCVTGQ--- 254 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~---~l~vg~~-~~y~lidl~~g~--- 254 (997)
++. .++++. ...|.+|.........++. ....+.+++|..+ .++.|.. ....++|+.++.
T Consensus 174 ---------~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 241 (383)
T 3ei3_B 174 ---------SRQ-MLATGDSTGRLLLLGLDGHEIFKEKL--HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN 241 (383)
T ss_dssp ---------TTT-EEEEEETTSEEEEEETTSCEEEEEEC--SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT
T ss_pred ---------CCC-EEEEECCCCCEEEEECCCCEEEEecc--CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc
Confidence 111 344444 3567788775433333321 3457899999853 5666654 568899998733
Q ss_pred -ceeeecCCCCCCCCceEEcCC-CCeEEEE-e-CCeEEEEcc-CCCccccccc------cC-CCCCeEEEe--CcEEEE-
Q 043572 255 -SGVIFTLPDVSCPPMLKLLSK-EQKVLLL-V-DNVGVFVDA-HGQPVGGSLV------FR-KSPDAVGEL--SMYVVV- 319 (997)
Q Consensus 255 -~~~l~~~~~~~~~p~i~~~~~-~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~------w~-~~P~~i~~~--~PYll~- 319 (997)
....+... .......+.. ++.+|++ . |+...+.|. .|...+ ++. +. ..+....+. .+++.+
T Consensus 242 ~~~~~~~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 242 SYIAEMPHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD-QIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317 (383)
T ss_dssp CEEEEEECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS-EEEECCBCCCTTSCCCCCEECSSSSEEEEE
T ss_pred ceEEEecCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc-ccccccccccccccceEEeccCCCCceEEE
Confidence 22223211 1112223333 3455544 3 456666664 343322 111 10 112222222 234433
Q ss_pred E---------ECCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEE
Q 043572 320 L---------RGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICY 373 (997)
Q Consensus 320 ~---------~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l 373 (997)
+ .++.|.|+++.++..++++........-..++ ++. .|+.+..++++.|...
T Consensus 318 ~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~-~s~-~g~~l~s~sd~~i~iw 378 (383)
T 3ei3_B 318 RYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK-FSP-TGDVLASGMGFNILIW 378 (383)
T ss_dssp CBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE-ECT-TSSEEEEEETTEEEEE
T ss_pred ecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE-Eec-CccEEEEecCCcEEEE
Confidence 2 25789999999999999986432100011111 222 3465666666655443
No 23
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.49 E-value=0.014 Score=66.65 Aligned_cols=231 Identities=10% Similarity=0.056 Sum_probs=134.6
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
..|.|+...++.|+.|+.+|.+..|....... ...+. -...+|..+.. +.+.++++-.||+
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~--------------~~~~~---~h~~~v~~l~~--~~~~l~sg~~dg~ 194 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--------------KRILT---GHTGSVLCLQY--DERVIITGSSDST 194 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCE--------------EEEEC---CCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE--------------EEEEc---CCCCcEEEEEE--CCCEEEEEcCCCe
Confidence 45899998899999999999999998764321 11111 14567888776 5565555556889
Q ss_pred EEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 112 LFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 112 l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
|.+|++..-+.+..+.. ...+..++.
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~~l~~----------------------------------------------------- 221 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVLHLRF----------------------------------------------------- 221 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEEC-----------------------------------------------------
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEE-----------------------------------------------------
Confidence 99999876544322111 111222221
Q ss_pred cCCceEEEEE-ECceEEEEEEeCCeEE-EEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCC
Q 043572 191 CRGDNVFAVI-IGKRLVLIELVNGSFV-ILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSC 266 (997)
Q Consensus 191 ~~~~~~l~Va-~kkki~i~~~~~~~~~-~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~ 266 (997)
++. .++++ ....|.+|....+... ..+.+. ....+.++.|.++.++.|.. ....++|+.++.....+.... .
T Consensus 222 -~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~ 297 (435)
T 1p22_A 222 -NNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--R 297 (435)
T ss_dssp -CTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS--S
T ss_pred -cCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC--C
Confidence 111 23444 3456888887655322 212221 23467899998888888865 568899998876554444221 1
Q ss_pred CCceEEcCCCCeEEEEe-CCeEEEEccC-CCcccccccc-CCCCCeEEEeCcEEEEEE-CCeEEEEecCCCc--------
Q 043572 267 PPMLKLLSKEQKVLLLV-DNVGVFVDAH-GQPVGGSLVF-RKSPDAVGELSMYVVVLR-GGKMELYHKKSGI-------- 334 (997)
Q Consensus 267 ~p~i~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w-~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~-------- 334 (997)
......+. ++.++.+. |+...+.|.. |.+.+ ++.- ......+.+...++++.. ++.|.|.++.++.
T Consensus 298 ~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 375 (435)
T 1p22_A 298 GIACLQYR-DRLVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375 (435)
T ss_dssp CEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred cEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEE-EEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence 11122222 33444443 4566666653 54432 2211 223445666666777665 6789999986654
Q ss_pred -eEEEEe
Q 043572 335 -CVQAVT 340 (997)
Q Consensus 335 -lvQ~i~ 340 (997)
.++++.
T Consensus 376 ~~~~~~~ 382 (435)
T 1p22_A 376 LCLRTLV 382 (435)
T ss_dssp TEEEEEC
T ss_pred hheeecc
Confidence 666664
No 24
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.48 E-value=0.035 Score=62.31 Aligned_cols=239 Identities=12% Similarity=0.075 Sum_probs=133.7
Q ss_pred eeEEeecCCeEEE---EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEEEEecC
Q 043572 34 ISPISDCQVLIYI---GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVLLLFCD 109 (997)
Q Consensus 34 I~ci~~~~~~l~i---GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lLv~l~d 109 (997)
..+++...+.+.+ |+.+|.+..|.+....... .....+. -+..+|..+..-| +.+.++.+-.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~----------~~~~~~~---~h~~~V~~~~~~p~~~~~l~s~s~d 103 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD----------KNVPLVC---GHTAPVLDIAWCPHNDNVIASGSED 103 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC----------TTCCCBC---CCSSCEEEEEECTTCTTEEEEEETT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC----------CCCceEe---cCCCCEEEEEeCCCCCCEEEEEeCC
Confidence 3445655555443 7899999999886532100 0111111 1567899999999 66655554558
Q ss_pred CeEEEeecCccc-------cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 110 QCLFLTDSLLTQ-------PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 110 ~~l~~~~l~~l~-------~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
|+|.+|++..-. ++..+. -...|+.++..+
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p------------------------------------------ 141 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP------------------------------------------ 141 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS------------------------------------------
T ss_pred CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc------------------------------------------
Confidence 899999998752 221111 112233333322
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeE---ecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCc
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEI---QCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei---~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~ 254 (997)
++...++.+. ...|.+|....++. ...+ ...+.+.+++|. ++.|+.|.. ....++|+.++.
T Consensus 142 ----------~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 142 ----------TAQNVLLSAGCDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp ----------SBTTEEEEEETTSCEEEEETTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred ----------CCCCEEEEEcCCCEEEEEECCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 1112344444 45578887766532 2333 135678999997 445777754 578899998887
Q ss_pred ceeeecCCCCCCCCceEEcCCCCeEEEEe-----CCeEEEEccCC-Ccccc--ccccCCCCCeEEEe--CcEEEEEE--C
Q 043572 255 SGVIFTLPDVSCPPMLKLLSKEQKVLLLV-----DNVGVFVDAHG-QPVGG--SLVFRKSPDAVGEL--SMYVVVLR--G 322 (997)
Q Consensus 255 ~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~-----~~~g~fv~~~G-~~~r~--~i~w~~~P~~i~~~--~PYll~~~--~ 322 (997)
....+.....+..+....+..++.+|++. ++...+.|... ..... .+.-...+..+.+. ..++++.. +
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 65555222222223333343345766653 44555566543 22111 22233445566665 34776554 6
Q ss_pred CeEEEEecCCCce-EEEE
Q 043572 323 GKMELYHKKSGIC-VQAV 339 (997)
Q Consensus 323 ~~ieI~~~~~~~l-vQ~i 339 (997)
+.|.|+++.++.. ++.+
T Consensus 290 g~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp SCEEEEEECSSTTCEEEE
T ss_pred CeEEEEEecCCCcceEee
Confidence 7899999998773 4444
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.44 E-value=0.073 Score=57.93 Aligned_cols=238 Identities=11% Similarity=0.026 Sum_probs=133.5
Q ss_pred ceeeeeEEeec------CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 30 RSLSISPISDC------QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 30 ~~~~I~ci~~~------~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
....|.|++.. +..|+-|+.||.+..|....... .....++ -...+|..+..-+....+
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------~~~~~l~---gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------------DLQWSLE---GHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECSSSSEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------------eeeeeec---cCCCCEEEEEECCCCCEE
Confidence 34578888853 34699999999999998864321 0010111 146689999988888755
Q ss_pred EEEecCCeEEEeecCccccccccccc-cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLGFL-KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~~~-kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+.+-.|++|++|++..-..+..+..- ..+..++..+
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp------------------------------------------- 132 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------------------------------------- 132 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-------------------------------------------
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-------------------------------------------
Confidence 55455899999998764332211100 0111111111
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCccee
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGV 257 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~ 257 (997)
++ ..++++. ..++.+|.+..+... ..+. -...+.+++|.. ..|+.|.. ....++|+.+++...
T Consensus 133 ---------dg-~~l~~g~~dg~v~i~~~~~~~~~--~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~ 200 (321)
T 3ow8_A 133 ---------DS-QYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 200 (321)
T ss_dssp ---------TS-SEEEEECTTSEEEEEETTTCSEE--EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------CC-CEEEEEcCCCcEEEEEcCCCcee--EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 11 2334433 356778777654322 2222 234578888874 45777754 568899998876544
Q ss_pred eecCCCCCCCCceEEcCCCCeEEEEe--CCeEEEEccC-CCccccccccC-CCCCeEEEe--CcEEEEEE-CCeEEEEec
Q 043572 258 IFTLPDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGEL--SMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 258 l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~--~PYll~~~-~~~ieI~~~ 330 (997)
.+.-. ........+..++.+|++. |....+.|.. |... .++.-. .....+++. ..+++... ++.|.|.++
T Consensus 201 ~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 201 TLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp EECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 44321 1111223343344566552 4455556653 3322 122211 123344553 45777665 578999999
Q ss_pred CCCceEEEEe
Q 043572 331 KSGICVQAVT 340 (997)
Q Consensus 331 ~~~~lvQ~i~ 340 (997)
.++..++++.
T Consensus 278 ~~~~~~~~~~ 287 (321)
T 3ow8_A 278 GTRTCVHTFF 287 (321)
T ss_dssp TTTEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999998874
No 26
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.43 E-value=0.09 Score=58.37 Aligned_cols=254 Identities=15% Similarity=0.136 Sum_probs=135.3
Q ss_pred ceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccc-c-ccccccCCCcceEEEeec-ccCcE
Q 043572 30 RSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVS-F-LKTVSVADSPVESIFVLD-DVGKV 103 (997)
Q Consensus 30 ~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~I~qi~vl~-~~~~l 103 (997)
....|+|++.. ++.|+.|+.+|.+..|.+......... ...... . .........+|..+...| ..+.+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE------eccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 45689999874 568999999999999998765421000 000000 0 000001566899999999 44544
Q ss_pred EEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
+.+-.|+.|++|++...++.........+..++..+..
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 153 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS------------------------------------------ 153 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSC------------------------------------------
T ss_pred EEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCC------------------------------------------
Confidence 44344889999998875544333222233333322100
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC---EEEEEEC-CcEEEEEecCCcc-e
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND---SIIVGTV-NGYSLFSCVTGQS-G 256 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~---~l~vg~~-~~y~lidl~~g~~-~ 256 (997)
.++ ..++++. ...|.+|.+..+... +.+. ....+.++.|..+ .++.|.. ....++|+.++.. .
T Consensus 154 -------~~~-~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~ 223 (408)
T 4a11_B 154 -------TKH-CLVAVGTRGPKVQLCDLKSGSCS--HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223 (408)
T ss_dssp -------SSC-CEEEEEESSSSEEEEESSSSCCC--EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred -------CCC-cEEEEEcCCCeEEEEeCCCccee--eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence 011 2344444 456888887654322 2222 3456789999843 3656654 5688999976642 1
Q ss_pred eeecCCC-----------CCCCCce--EEcCCCCeEEE-Ee-CCeEEEEccC-CCcccc----ccccCCCCCeEEE----
Q 043572 257 VIFTLPD-----------VSCPPML--KLLSKEQKVLL-LV-DNVGVFVDAH-GQPVGG----SLVFRKSPDAVGE---- 312 (997)
Q Consensus 257 ~l~~~~~-----------~~~~p~i--~~~~~~~e~Ll-~~-~~~g~fv~~~-G~~~r~----~i~w~~~P~~i~~---- 312 (997)
..+.... ......+ ..+..++.+|+ +. |+...+.|.. |..... ...-...+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence 1121100 0111112 22333344444 43 4566666653 443221 0001111111111
Q ss_pred eCcEEEEEECCeEEEEecCCCceEEEEec
Q 043572 313 LSMYVVVLRGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 313 ~~PYll~~~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
...++++-.++.|.|+++.++..++++.-
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred CceEEEEecCCEEEEEECcCCcceeeecc
Confidence 13355566789999999999999988863
No 27
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.40 E-value=0.012 Score=65.78 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=50.2
Q ss_pred eeeeEEeec------C---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccC-----CCcceEEEee
Q 043572 32 LSISPISDC------Q---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVA-----DSPVESIFVL 97 (997)
Q Consensus 32 ~~I~ci~~~------~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~I~qi~vl 97 (997)
..|+|++.. + +.|+.|+.+|.+..|.+....... ......+. .. ..+|..+...
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---------~~~~~~~~---~~~~~~~~~~v~~~~~~ 130 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---------KVIFEKLD---LLDSDMKKHSFWALKWG 130 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC---------CEEEEEEC---CSCTTGGGSCEEEEEEE
T ss_pred CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc---------cccceeec---ccccccCCCcEEEEEEe
Confidence 468888765 5 679999999999999987543200 00011111 12 4789999999
Q ss_pred ----cccCc-EEEEecCCeEEEeecCc
Q 043572 98 ----DDVGK-VLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 98 ----~~~~~-lLv~l~d~~l~~~~l~~ 119 (997)
|+.+. ++++-.|+.|++|++..
T Consensus 131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 131 ASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp CCC----CEEEEEEETTSCEEEEEEES
T ss_pred eccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 88886 66655689999999877
No 28
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.39 E-value=0.032 Score=62.15 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=137.8
Q ss_pred eeeEEeec--CCeEE-EEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 33 SISPISDC--QVLIY-IGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 33 ~I~ci~~~--~~~l~-iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
.+.|++.. ++.|| .|+.+|.+..|...... ...... ...+|..+.+-|+.++++++-.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--------------~~~~~~----~~~~v~~~~~spdg~~l~~~~~~ 94 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------------VIATVP----AGSSPQGVAVSPDGKQVYVTNMA 94 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------EEEEEE----CSSSEEEEEECTTSSEEEEEETT
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------------EEEEEE----CCCCccceEECCCCCEEEEEECC
Confidence 46777754 55675 45689999988775432 111111 2338999999999887766443
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+.|++|++..-+....+..-.++..++..+
T Consensus 95 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~------------------------------------------------- 125 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAGTVKTGKSPLGLALSP------------------------------------------------- 125 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECT-------------------------------------------------
T ss_pred CCEEEEEECCCCeEEEEEeCCCCcceEEECC-------------------------------------------------
Confidence 4799999987654433222223344444322
Q ss_pred cccCCceEEEEEE--CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC--CcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVII--GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV--NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~--kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~--~~y~lidl~~g~~~~l~~~~ 262 (997)
++ ..++++. ...|.+|....++. .+.+.....+..+.|.. +.++++.. ....++|+.++.....++..
T Consensus 126 ---dg-~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 199 (391)
T 1l0q_A 126 ---DG-KKLYVTNNGDKTVSVINTVTKAV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE 199 (391)
T ss_dssp ---TS-SEEEEEETTTTEEEEEETTTTEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred ---CC-CEEEEEeCCCCEEEEEECCCCcE--EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC
Confidence 11 1233333 34566666555433 34444566788888884 45655543 46899999888766666543
Q ss_pred CCCCCCceEEcCCCCe-EEEEe----CCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCC
Q 043572 263 DVSCPPMLKLLSKEQK-VLLLV----DNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKS 332 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e-~Ll~~----~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~ 332 (997)
. .+....+..++. ++++. ++...++|.. |.+.+ .+.-...|..+++. ..++++.. ++.|.|+++.+
T Consensus 200 ~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 200 A---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp S---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred C---CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE-EEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 2 233333433334 44443 3456666754 43322 33334456666666 44776553 57899999999
Q ss_pred CceEEEEecCC
Q 043572 333 GICVQAVTFGG 343 (997)
Q Consensus 333 ~~lvQ~i~~~~ 343 (997)
++++++++...
T Consensus 276 ~~~~~~~~~~~ 286 (391)
T 1l0q_A 276 NTITATMAVGK 286 (391)
T ss_dssp TEEEEEEECSS
T ss_pred CcEEEEEECCc
Confidence 99999987643
No 29
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.38 E-value=0.055 Score=61.16 Aligned_cols=236 Identities=12% Similarity=0.032 Sum_probs=135.3
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|....... ...++ -...+|..+...|+.+.++.+-.|
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------------~~~l~---~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------ERTLK---GHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------------CEEEC---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------EEEEe---ccCCcEEEEEEcCCCCEEEEEeCC
Confidence 578898865 56899999999999998865431 11111 156689999999988866666668
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
++|.+|++...+.+..+.. ...|+.++..+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p------------------------------------------------- 202 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMP------------------------------------------------- 202 (410)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECS-------------------------------------------------
T ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-------------------------------------------------
Confidence 9999999877655433221 22344444332
Q ss_pred cccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcceeeecCCC
Q 043572 189 QHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 189 ~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~l~~~~~ 263 (997)
++. .++.+ ..+.|.+|....+. .++.+.- .+.+.++.+.. ..++.|. .+...+.|+.++.....+....
T Consensus 203 ---~~~-~l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~ 276 (410)
T 1vyh_C 203 ---NGD-HIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276 (410)
T ss_dssp ---SSS-EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---CCC-EEEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence 111 23333 34557788776542 2233322 34567777774 3466664 4578889998776443332111
Q ss_pred CCCCCceEEc-C-------------------CCCeEEEE--eCCeEEEEcc-CCCcccccccc-CCCCCeEEEe--CcEE
Q 043572 264 VSCPPMLKLL-S-------------------KEQKVLLL--VDNVGVFVDA-HGQPVGGSLVF-RKSPDAVGEL--SMYV 317 (997)
Q Consensus 264 ~~~~p~i~~~-~-------------------~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~--~PYl 317 (997)
.. .....+ + ..+.+|++ .|+...+.|. .|.+.. ++.= ......+++. ..||
T Consensus 277 ~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 277 HV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-TLVGHDNWVRGVLFHSGGKFI 353 (410)
T ss_dssp SC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSCE
T ss_pred ce--EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE-EEECCCCcEEEEEEcCCCCEE
Confidence 00 000011 1 11345554 3455556664 343321 1111 1112344443 3577
Q ss_pred EEEE-CCeEEEEecCCCceEEEEecC
Q 043572 318 VVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 318 l~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
++.. ++.|.|.++.++..++++.-.
T Consensus 354 ~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp EEEETTTEEEEECCTTSCCCEEEECC
T ss_pred EEEeCCCeEEEEECCCCceEEEEcCC
Confidence 7665 578999999999998888643
No 30
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.03 Score=61.58 Aligned_cols=239 Identities=10% Similarity=0.005 Sum_probs=129.4
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... .....+. -...+|..+...+. .+.++.+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------KLIDTLT---GHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCGGGCSEEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc------------eeeeEec---CCCCcEEEEEeCCCCCCCEEEEe
Confidence 3578888854 66899999999999999874321 1111111 25678999998876 5655555
Q ss_pred ecCCeEEEeecCccc--cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FCDQCLFLTDSLLTQ--PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~d~~l~~~~l~~l~--~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
-.||+|++|++..-. +..... ....+..++..+..
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------------------ 113 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE------------------------------------------ 113 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG------------------------------------------
T ss_pred ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC------------------------------------------
Confidence 558899999987643 211111 12234444432210
Q ss_pred chhcccccCCceEEEEE-ECceEEEEEEeCCeEE-EEEeEecCCcceEEEEeC---------------CEEEEEEC-CcE
Q 043572 184 VKEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFV-ILKEIQCMDGVKTMVWLN---------------DSIIVGTV-NGY 245 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~-~~kei~~~~~~~~l~~~~---------------~~l~vg~~-~~y 245 (997)
.+ ..++++ ....|.+|.+...... ...-......+.++.|.. +.++.|.. ...
T Consensus 114 --------~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 184 (379)
T 3jrp_A 114 --------YG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 184 (379)
T ss_dssp --------GC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCE
T ss_pred --------CC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeE
Confidence 01 234444 4456888888765221 111112355778999874 45777754 568
Q ss_pred EEEEecCCcce--eeecCCCCCCCCceEEcCCC---CeEEEE--eCCeEEEEccC-CCcc-cc-ccc---cCCCCCeEEE
Q 043572 246 SLFSCVTGQSG--VIFTLPDVSCPPMLKLLSKE---QKVLLL--VDNVGVFVDAH-GQPV-GG-SLV---FRKSPDAVGE 312 (997)
Q Consensus 246 ~lidl~~g~~~--~l~~~~~~~~~p~i~~~~~~---~e~Ll~--~~~~g~fv~~~-G~~~-r~-~i~---w~~~P~~i~~ 312 (997)
.++|+.++... .+..............+..+ +.+|++ .|+...+.+.. |... .. .+. .......+.+
T Consensus 185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (379)
T 3jrp_A 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 264 (379)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEE
Confidence 89999876533 22222221111122233333 466655 34555666653 3211 11 122 2222334444
Q ss_pred e--CcEEEEEE-CCeEEEEecCCCce
Q 043572 313 L--SMYVVVLR-GGKMELYHKKSGIC 335 (997)
Q Consensus 313 ~--~PYll~~~-~~~ieI~~~~~~~l 335 (997)
. ..||++.. ++.|.|+++.++..
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred cCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 3 34666554 56899998875443
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.36 E-value=0.14 Score=57.46 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=58.3
Q ss_pred ccccCCCCCCCccceeeeeEEee---cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceE
Q 043572 17 QFDLSHYSRSSPIRSLSISPISD---CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVES 93 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~I~ci~~---~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~q 93 (997)
+||.........+....+.++.+ .++.|+.|+.+|.+..|...... .....+ -...+|..
T Consensus 82 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~---~h~~~v~~ 144 (420)
T 3vl1_A 82 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--------------QREIDQ---AHVSEITK 144 (420)
T ss_dssp EEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--------------EEEETT---SSSSCEEE
T ss_pred EEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--------------eeeecc---cccCccEE
Confidence 44543322323333445555544 46789999999999988765322 111111 15678999
Q ss_pred EEeecccCcEEEEecCCeEEEeecCccccc
Q 043572 94 IFVLDDVGKVLLLFCDQCLFLTDSLLTQPL 123 (997)
Q Consensus 94 i~vl~~~~~lLv~l~d~~l~~~~l~~l~~~ 123 (997)
+...|+.+.++.+-.|++|++|++...+.+
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence 999999886666566889999999875544
No 32
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.35 E-value=0.034 Score=59.95 Aligned_cols=77 Identities=9% Similarity=-0.030 Sum_probs=53.9
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+...... ......+. -...+|..|...|. .+.++.+
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~~~---~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN----------WELSDSWR---AHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC----------EEEEEEEE---CCSSCEEEEEECCGGGCSEEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc----------ceecceec---cCCCcEEEEEEcCCCCCCEEEEE
Confidence 4578888864 567999999999999999754321 01111111 25678999999985 5655554
Q ss_pred ecCCeEEEeecCcc
Q 043572 107 FCDQCLFLTDSLLT 120 (997)
Q Consensus 107 l~d~~l~~~~l~~l 120 (997)
-.|++|++|++..-
T Consensus 78 ~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 78 SYDKTVKLWEEDPD 91 (351)
T ss_dssp ETTSCEEEEEECTT
T ss_pred cCCCeEEEEecCCC
Confidence 55889999998764
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.35 E-value=0.0056 Score=67.25 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=51.8
Q ss_pred eeeeEEeecC------CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEE
Q 043572 32 LSISPISDCQ------VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVL 104 (997)
Q Consensus 32 ~~I~ci~~~~------~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lL 104 (997)
..|+|++... +.|+.|+.+|.+..|.+..... ...+. -...+|..|...| +.+.++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--------------~~~~~---~~~~~i~~~~~~~~~~~~l~ 132 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC--------------IKHYV---GHGNAINELKFHPRDPNLLL 132 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE--------------EEEEE---SCCSCEEEEEECSSCTTEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE--------------eeeec---CCCCcEEEEEECCCCCCEEE
Confidence 4578877543 3799999999999987764321 11111 1567899999999 666555
Q ss_pred EEecCCeEEEeecCccccc
Q 043572 105 LLFCDQCLFLTDSLLTQPL 123 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~ 123 (997)
.+-.||+|++|++..-++.
T Consensus 133 s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 133 SVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp EEETTSCEEEEETTTTEEE
T ss_pred EEeCCCeEEEEEeecCeEE
Confidence 5445889999999765443
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.076 Score=59.30 Aligned_cols=246 Identities=10% Similarity=0.072 Sum_probs=130.6
Q ss_pred eeeeEEeec--CC-eEEEEcCCceEEEEEe----CCCCCCCCCCCCCCCCccccccccccc------cCCCcceEEEeec
Q 043572 32 LSISPISDC--QV-LIYIGTQSGSLILLSL----DPTAATTLHVPNTTPSQQHVSFLKTVS------VADSPVESIFVLD 98 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iGT~~G~ll~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~qi~vl~ 98 (997)
..|+|++.. ++ .|+.|+.+|.+..|.+ ......-. ......+..... -...+|..+...|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK-------LTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE-------EEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc-------ccccccccccccccccccCCCCceEEEEEcC
Confidence 478888865 55 8999999999999999 43320000 000000000000 0345899999999
Q ss_pred ccCcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc
Q 043572 99 DVGKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI 177 (997)
Q Consensus 99 ~~~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (997)
+.+.++++-.||.|.+|+. .-.++..+. ....++.++..+
T Consensus 119 ~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~-------------------------------------- 159 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNK-------------------------------------- 159 (425)
T ss_dssp TSSEEEEEETTSCEEEEET-TSCEEEEECCCCSCEEEEEECT--------------------------------------
T ss_pred CCCEEEEEeCCCeEEEEeC-CCCeeeeccCCCccEEEEEECC--------------------------------------
Confidence 8887777667889999983 222222111 112233333322
Q ss_pred ccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCc----------------ceEEEEeCC-EEEE
Q 043572 178 KANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDG----------------VKTMVWLND-SIIV 239 (997)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~----------------~~~l~~~~~-~l~v 239 (997)
++. .++++. ...|.+|.+..+... +.+..+.. +.++.|..+ .+++
T Consensus 160 --------------~~~-~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (425)
T 1r5m_A 160 --------------DGT-HIISMDVENVTILWNVISGTVM--QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI 222 (425)
T ss_dssp --------------TSS-EEEEEETTCCEEEEETTTTEEE--EEECCC---------------CCCBSCCEEEETTEEEE
T ss_pred --------------CCC-EEEEEecCCeEEEEECCCCcEE--EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEE
Confidence 111 234443 456778777654322 22222221 677777754 4666
Q ss_pred E-ECCcEEEEEecCCcceeeecCCCCCCCCceEEc-CCCCeEEEEe-CCeEEEEccC-CCccccccc-cCCCCCeEEEeC
Q 043572 240 G-TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDAH-GQPVGGSLV-FRKSPDAVGELS 314 (997)
Q Consensus 240 g-~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~-w~~~P~~i~~~~ 314 (997)
| ......++|+.++.....+.... .......+ +++..++.+. ++...+.+.. |.+.+ .+. -......+.+..
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN-CFYGHSQSIVSASWVG 299 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE-EECCCSSCEEEEEEET
T ss_pred EcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce-EecCCCccEEEEEECC
Confidence 6 44578899998775544443221 11111222 3333444444 4555566643 33322 221 123344555553
Q ss_pred c-EEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 315 M-YVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 315 P-Yll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
. ++++.. ++.|.|+++.++..++.+....
T Consensus 300 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 300 DDKVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp TTEEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 3 555544 6789999999999988887543
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.29 E-value=0.026 Score=62.05 Aligned_cols=232 Identities=15% Similarity=0.047 Sum_probs=127.9
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
....|+|++.. ++.|+.|+.+|.+..|....... .....+. -...+|..|...|+.+.++++-
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~------------~~~~~~~---~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------VQVHELK---EHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------EEEEEEE---CCSSCEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE------------Eeeeeec---CCCCcccEEEEeCCCCEEEEEc
Confidence 34567777754 56899999999999998875420 0111111 2566899999999888666655
Q ss_pred cCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 108 CDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
.|++|++|++..-+.... ......++.++..+
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------------- 106 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--------------------------------------------- 106 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT---------------------------------------------
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC---------------------------------------------
Confidence 688999999865432211 11122334333321
Q ss_pred hhcccccCCceEEEEEEC-ceEEEEEEeCCe-EEEEEeEec--CCcceEEEEeC--CEEEEEEC-CcEEEEEecC-----
Q 043572 185 KEEEQHCRGDNVFAVIIG-KRLVLIELVNGS-FVILKEIQC--MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVT----- 252 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~-~~~~kei~~--~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~----- 252 (997)
++ ..++++.. ..|.+|.+..+. +...+.+.. ...+.++.|.. +.++.|.. ....++|+..
T Consensus 107 -------~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 107 -------NE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp -------TS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred -------CC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence 11 23555544 568888887653 333333322 45789999974 45777764 5688999642
Q ss_pred -------------CcceeeecCCCCCCCCceEEcCCCCeEEE-Ee-CCeEEEEcc-CCCccccccccCC-CCCeEEEe--
Q 043572 253 -------------GQSGVIFTLPDVSCPPMLKLLSKEQKVLL-LV-DNVGVFVDA-HGQPVGGSLVFRK-SPDAVGEL-- 313 (997)
Q Consensus 253 -------------g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~-~G~~~r~~i~w~~-~P~~i~~~-- 313 (997)
+.....+. ..........+..++.+|+ +. |+...+.|. .|.+.. .+.-.. ....+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-TLASETLPLLAVTFITE 255 (372)
T ss_dssp CCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE-EEECSSCCEEEEEEEET
T ss_pred cccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE-EEccCCCCeEEEEEecC
Confidence 22222222 1111111222332334444 33 445555665 344332 222222 22344444
Q ss_pred CcEEEEEECCeEEEEecCC
Q 043572 314 SMYVVVLRGGKMELYHKKS 332 (997)
Q Consensus 314 ~PYll~~~~~~ieI~~~~~ 332 (997)
..++++-.++.|.|+++.+
T Consensus 256 ~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 256 SSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEETTSSCEEEEEET
T ss_pred CCEEEEEeCCeEEEEEccC
Confidence 3466655678899998877
No 36
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.29 E-value=0.06 Score=59.64 Aligned_cols=244 Identities=8% Similarity=0.033 Sum_probs=129.7
Q ss_pred ceeeeeEEeec--CCeEEEEcC------CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC
Q 043572 30 RSLSISPISDC--QVLIYIGTQ------SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG 101 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~------~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~ 101 (997)
.+..|+|++.. |..|+-|+. ||.+..|.......... . ..... -....|..+...|+..
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~--------~-~~~~~----~~~~~V~~~~~s~d~~ 107 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES--------L-CTAGV----QTEAGVTDVAWVSEKG 107 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG--------G-CSEEE----ECSSCEEEEEEETTTE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee--------E-ecccC----CCCCCEEEEEEcCCCC
Confidence 34678998864 557777776 78887776654332100 0 01111 1456799999999865
Q ss_pred cEEEEecCCeEEEeecCccccccccc-----cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 102 KVLLLFCDQCLFLTDSLLTQPLKKLG-----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 102 ~lLv~l~d~~l~~~~l~~l~~~~~~~-----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
+|++-.||+|++|++..-++..... -...|+.++..+
T Consensus 108 -~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp------------------------------------- 149 (357)
T 4g56_B 108 -ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS------------------------------------- 149 (357)
T ss_dssp -EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-------------------------------------
T ss_pred -EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-------------------------------------
Confidence 7776889999999986643322111 112244444322
Q ss_pred cccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--C-EEEEEE-CCcEEEEEe
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--D-SIIVGT-VNGYSLFSC 250 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~-~l~vg~-~~~y~lidl 250 (997)
++ ..++.+. ...|.+|....+.. ...+.. ...+.+++|.. + .++.|. .....+.|+
T Consensus 150 ---------------dg-~~l~sgs~dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 150 ---------------DG-TQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp ---------------SS-SEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred ---------------CC-CEEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence 11 1344444 44578887765532 233322 35678898873 3 344554 456888899
Q ss_pred cCCcceeeecCCCCCCCCceEEc-CCCCeEEEE-e-CCeEEEEcc-CCCccccccccCC-CCCeEEEeC---cEEEEEE-
Q 043572 251 VTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLL-V-DNVGVFVDA-HGQPVGGSLVFRK-SPDAVGELS---MYVVVLR- 321 (997)
Q Consensus 251 ~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~w~~-~P~~i~~~~---PYll~~~- 321 (997)
.+++....+........+....+ ++++.++++ . |....+.|. .|++.+ ++.-.. ....+++.. .||++..
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ-TSAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-EECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE-EEeccceeEEEEEEcCCCCCEEEEEeC
Confidence 87765444443322222222333 333445543 3 445555664 344332 222222 234555542 4666554
Q ss_pred CCeEEEEecCCCceEEEEecCC
Q 043572 322 GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 322 ~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++.|.|.++.++++++.+...+
T Consensus 291 D~~i~iwd~~~~~~~~~~~H~~ 312 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDLSHRD 312 (357)
T ss_dssp TSCEEEECTTSCEEEEECCCSS
T ss_pred CCEEEEEECCCCcEeEECCCCC
Confidence 5789999999999988875544
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.27 E-value=0.045 Score=59.48 Aligned_cols=240 Identities=10% Similarity=0.015 Sum_probs=134.5
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++.. ++.|+-|+.||.+..|.+....... ..+...++ -...+|..+...|+...++.+-.
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------GVPVRSFK---GHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------EEEEEEEE---CCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------cccceEEe---CCcccEEEEEECCCCCEEEEEeC
Confidence 467888764 2579999999999999886432100 01111111 15678999999998886666566
Q ss_pred CCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|++|++|++..-+++..+.. ...|..++..+
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~------------------------------------------------ 117 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK------------------------------------------------ 117 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECT------------------------------------------------
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcC------------------------------------------------
Confidence 89999999876544322211 12233333221
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--------EEEEE-ECCcEEEEEecCCccee
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND--------SIIVG-TVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--------~l~vg-~~~~y~lidl~~g~~~~ 257 (997)
++ ..++.+. .+.|.+|.+.......+.. ..+.+.++.|..+ .++.| ......+.|+.++....
T Consensus 118 ----~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 190 (319)
T 3frx_A 118 ----KA-SMIISGSRDKTIKVWTIKGQCLATLLG--HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190 (319)
T ss_dssp ----TS-CEEEEEETTSCEEEEETTSCEEEEECC--CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ----CC-CEEEEEeCCCeEEEEECCCCeEEEEec--cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence 11 1233333 4457888776543332221 2345677777532 45555 44578889987765443
Q ss_pred eecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCCccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCC
Q 043572 258 IFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSG 333 (997)
Q Consensus 258 l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~ 333 (997)
.+.-. ...-....+..++.+|++ .|+...+.|........++.-......+++. ..++.+...+.+.|+++.++
T Consensus 191 ~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~ 268 (319)
T 3frx_A 191 DFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268 (319)
T ss_dssp EECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred eecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence 33211 111112233334455554 3556666775432211123323333344443 34777777889999999998
Q ss_pred ceEEEEe
Q 043572 334 ICVQAVT 340 (997)
Q Consensus 334 ~lvQ~i~ 340 (997)
.+++.+.
T Consensus 269 ~~~~~~~ 275 (319)
T 3frx_A 269 YLVDDLR 275 (319)
T ss_dssp EEEEEEC
T ss_pred eeeeccC
Confidence 8887764
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.27 Score=52.13 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=130.4
Q ss_pred eeeeeEEee-cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 31 SLSISPISD-CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 31 ~~~I~ci~~-~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
...|+|++. .++.|+.|+.+|.+..|....... ..... ....+|..+...|+.+.++++-.|
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--------------~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL--------------GTVVY---TGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEE--------------EEEEE---ECSSCEEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEE--------------EEEee---cCCccEEEEEECCCCCEEEEecCC
Confidence 357888774 466899999999999999854321 11111 256789999999998877776678
Q ss_pred CeEEEeecCcccccccccc----ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 110 QCLFLTDSLLTQPLKKLGF----LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~----~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
+.+.+|++........+.. ...+..++.+
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------------------------- 113 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ----------------------------------------------- 113 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-----------------------------------------------
T ss_pred CeEEEEEeeecCCCCcccchhhcccCEEEEEec-----------------------------------------------
Confidence 9999999876432111111 1122222211
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe---CCEEEEEEC-CcEEEEEecCCcceeee
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL---NDSIIVGTV-NGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~---~~~l~vg~~-~~y~lidl~~g~~~~l~ 259 (997)
+. .++++. ...|.+|. .+... ..+. ....+.++.|. ++.+++|.. ....++|. +.....+
T Consensus 114 -------~~-~l~~~~~d~~i~~~d--~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~ 179 (313)
T 3odt_A 114 -------DG-VVISGSWDKTAKVWK--EGSLV--YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTF 179 (313)
T ss_dssp -------TT-EEEEEETTSEEEEEE--TTEEE--EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEE
T ss_pred -------CC-EEEEEeCCCCEEEEc--CCcEE--EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEE
Confidence 11 233333 44566665 32222 2222 24566778775 456777755 46778882 3333333
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEe-CCeEEEEccC-CCccccccccC-CCCCeEEEeCc-EEEEE-ECCeEEEEecCCCc
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGELSM-YVVVL-RGGKMELYHKKSGI 334 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~~P-Yll~~-~~~~ieI~~~~~~~ 334 (997)
...... ......+.+++.++.+. ++...+.|.. |.+.+ .+.-. .....+++... ++++. .++.|.|+++.++.
T Consensus 180 ~~~~~~-~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 180 SGIHND-VVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLR-TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp CSSCSS-CEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC
T ss_pred eccCcc-cEEEEEEcCCCeEEEccCCCeEEEEECCchhhhh-hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc
Confidence 321111 11122232234555554 4455556653 44332 22211 22334454433 45544 46799999999999
Q ss_pred eEEEEecCC
Q 043572 335 CVQAVTFGG 343 (997)
Q Consensus 335 lvQ~i~~~~ 343 (997)
.++++....
T Consensus 258 ~~~~~~~~~ 266 (313)
T 3odt_A 258 LKQVITLPA 266 (313)
T ss_dssp EEEEEECSS
T ss_pred eeEEEeccC
Confidence 999987665
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.24 E-value=0.087 Score=56.57 Aligned_cols=190 Identities=15% Similarity=0.081 Sum_probs=108.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.+|.+..|.+..... ...++ -...+|..+..-|+.+.++.+-.|
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--------------~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 128 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--------------LKTLK---GHSNYVFCCNFNPQSNLIVSGSFD 128 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------EEEEE---CCSSCEEEEEECSSSSEEEEEETT
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--------------EEEEc---CCCCCEEEEEEcCCCCEEEEEeCC
Confidence 467888754 56899999999999998865321 11111 156689999999988866665668
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++++|++....++..+.. ...++.++..+
T Consensus 129 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------- 159 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR------------------------------------------------- 159 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECT-------------------------------------------------
T ss_pred CcEEEEECCCCEEEEEecCCCCcEEEEEEcC-------------------------------------------------
Confidence 9999999876543322211 12233333221
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec--CCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC--MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~--~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++. .++++. ...|.+|....+.. .+.+.. ...+..+.|.. ..++.|.. ....++|+.++.....+...
T Consensus 160 ---~~~-~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 160 ---DGS-LIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp ---TSS-EEEEEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred ---CCC-EEEEEeCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 111 234443 45577877765432 222222 23457788874 45777754 56889999887655544432
Q ss_pred CCCCCCceEEc-CCCCeEEEEe--CCeEEEEccC
Q 043572 263 DVSCPPMLKLL-SKEQKVLLLV--DNVGVFVDAH 293 (997)
Q Consensus 263 ~~~~~p~i~~~-~~~~e~Ll~~--~~~g~fv~~~ 293 (997)
..........+ ..++.+|++. |+...+.|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 21111111222 2334666552 4455555643
No 40
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.18 E-value=0.032 Score=63.51 Aligned_cols=231 Identities=10% Similarity=0.084 Sum_probs=126.8
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
...|+|++..++.|+.|+.+|.+..|.+..... ...+. -...+|..+..- .+.++.+-.||
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~--------------~~~~~---~h~~~v~~l~~~--~~~l~s~s~dg 233 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM--------------LNTLI---HHCEAVLHLRFN--NGMMVTCSKDR 233 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCCE--------------EEEEC---CCCSCEEEEECC--TTEEEEEETTS
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE--------------EEEEc---CCCCcEEEEEEc--CCEEEEeeCCC
Confidence 457999998888999999999999998865431 11111 145678887764 34566656688
Q ss_pred eEEEeecCcccccccccc----ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 111 CLFLTDSLLTQPLKKLGF----LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~----~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
+|.+|++..-.+...... ...+..++.
T Consensus 234 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~------------------------------------------------- 264 (435)
T 1p22_A 234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF------------------------------------------------- 264 (435)
T ss_dssp CEEEEECSSSSCCEEEEEECCCSSCEEEEEE-------------------------------------------------
T ss_pred cEEEEeCCCCCCceeeeEecCCCCcEEEEEe-------------------------------------------------
Confidence 999999876443211000 111222221
Q ss_pred cccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 187 EEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
++ ..++++. ...|.+|....+.. ++.+. ....+.++.|.++.++.|.. +...++|+.+|.....+....
T Consensus 265 -----~~-~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 265 -----DD-KYIVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp -----ET-TEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred -----CC-CEEEEEeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence 01 1244444 45677877765432 33333 24567899998888888865 578999998886555444221
Q ss_pred CCCCCceEEcCCCCeEEE-Ee-CCeEEEEccC-CC-ccc-------ccccc-CCCCCeEEEeCcEEEEEE-CCeEEEEec
Q 043572 264 VSCPPMLKLLSKEQKVLL-LV-DNVGVFVDAH-GQ-PVG-------GSLVF-RKSPDAVGELSMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~-G~-~~r-------~~i~w-~~~P~~i~~~~PYll~~~-~~~ieI~~~ 330 (997)
..+..+.-++.+|+ +. |+...+.|.. |. +.. .++.- ......+.+...++++.. ++.|.|.++
T Consensus 337 ----~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 337 ----ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp ----SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-
T ss_pred ----CcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEEC
Confidence 11222211234444 33 4555555542 22 100 01221 234567778777777665 678999999
Q ss_pred CCCceEEEEec
Q 043572 331 KSGICVQAVTF 341 (997)
Q Consensus 331 ~~~~lvQ~i~~ 341 (997)
.+....+..+.
T Consensus 413 ~~~~~~~~~~~ 423 (435)
T 1p22_A 413 LNDPAAQAEPP 423 (435)
T ss_dssp -----------
T ss_pred CCCCCcccCCC
Confidence 88766665543
No 41
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.17 E-value=0.14 Score=58.41 Aligned_cols=259 Identities=10% Similarity=0.071 Sum_probs=135.8
Q ss_pred eeeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec--ccCcEEEEe
Q 043572 31 SLSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD--DVGKVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~--~~~~lLv~l 107 (997)
...|+|++.. ++.|+.|+.||.+..|.+..... ....+ -...+|..+.+.+ +.+.++.+-
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~---~h~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC--------------THVFE---GHNSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE--------------EEEEC---CCSSCEEEEEEEESSSCEEEEEEE
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE--------------EEEEC---CCCCccEEEEEecCCCCCEEEEEc
Confidence 3578888865 44899999999999998864321 11111 1567899999885 445455555
Q ss_pred cCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc-ccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI-KANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~g~~~~~ 186 (997)
.|+++++|++..-..........+.......+.. .+.++... .+|. .+..
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~v~~----- 275 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVL-----------------------RGHMASVRT----- 275 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGG-CTTEEEEE-----------------------CCCSSCEEE-----
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCC-CeEEEEEc-----------------------cCccceEEE-----
Confidence 6889999999875543321111111111101000 00000000 0000 0000
Q ss_pred cccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 187 EEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
...++. .++++. ...|.+|....+. .+..+. ..+.+.++.|.. +.++.|.. ....++|+.+|+....+..
T Consensus 276 --~~~~~~-~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 276 --VSGHGN-IVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp --EEEETT-EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred --EcCCCC-EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 001122 344444 4567888776543 333333 245678898884 46777765 5688999988865544432
Q ss_pred CCCCCCCceEEcCCCCeEEEEe-CCeEEEEccCCCccccccccCCCCC--eEEEeCcEEEEEECCeEEEEecCCCceEEE
Q 043572 262 PDVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFRKSPD--AVGELSMYVVVLRGGKMELYHKKSGICVQA 338 (997)
Q Consensus 262 ~~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~~~P~--~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~ 338 (997)
.. .......+. +..++.+. |+...+.|...........-..... .+.....++++-.++.|.|.++.++.+++.
T Consensus 351 h~--~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 351 HT--ALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp CS--SCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEES
T ss_pred CC--CcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEeh
Confidence 21 111122233 32444443 4566666654221111111111222 223345578877899999999999999987
Q ss_pred EecCC
Q 043572 339 VTFGG 343 (997)
Q Consensus 339 i~~~~ 343 (997)
.....
T Consensus 428 ~~~~~ 432 (464)
T 3v7d_B 428 NILKD 432 (464)
T ss_dssp CTTTT
T ss_pred hhccC
Confidence 54443
No 42
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.16 E-value=0.17 Score=57.10 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=53.6
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCC------------CcceEEE
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVAD------------SPVESIF 95 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~I~qi~ 95 (997)
....|+|++.. ++.|+.|+.+|.+..|.+........... ...+......-.. .+|..|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR------GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC------CCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc------cceeEecccccccccccccccccccCceEEEE
Confidence 44688888864 56899999999999999876542100000 0000000000122 6799999
Q ss_pred eeccc--CcEEEEecCCeEEEeecCc
Q 043572 96 VLDDV--GKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 96 vl~~~--~~lLv~l~d~~l~~~~l~~ 119 (997)
..|.. +.++.+-.|++|++|++..
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred EcCCCCcceEEEeCCCCeEEEEeccc
Confidence 99987 5677766789999999865
No 43
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.047 Score=59.65 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=98.3
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... ..... ...+|..+...|+...++++..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~----~~~~v~~~~~~~~~~~l~~~~~ 135 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC--------------VATWK----SPVPVKRVEFSPCGNYFLAILD 135 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--------------EEEEE----CSSCEEEEEECTTSSEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------EEEee----cCCCeEEEEEccCCCEEEEecC
Confidence 4578888865 66899999999999998865331 11111 4568999999999987777555
Q ss_pred C-----CeEEEeecCccccccccccc--c------------ceEEEEeecccCCccccccccccccccccccCCcccchh
Q 043572 109 D-----QCLFLTDSLLTQPLKKLGFL--K------------GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRL 169 (997)
Q Consensus 109 d-----~~l~~~~l~~l~~~~~~~~~--k------------g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 169 (997)
+ +.+.+|++..-......... + .++.++..+
T Consensus 136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 185 (369)
T 3zwl_B 136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST------------------------------ 185 (369)
T ss_dssp CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG------------------------------
T ss_pred CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC------------------------------
Confidence 6 89999998764322211110 0 122222111
Q ss_pred hhhccCccccCCccchhcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-Cc
Q 043572 170 LQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NG 244 (997)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~ 244 (997)
++ ..++++.. ..|.+|....+ ....+.+. ....+.++.|.. ..|++|.. ..
T Consensus 186 ----------------------~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 241 (369)
T 3zwl_B 186 ----------------------KG-KYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241 (369)
T ss_dssp ----------------------GG-CEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ----------------------CC-CEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence 11 23444444 55778877652 22333333 245678999974 45777754 57
Q ss_pred EEEEEecCCcceeeec
Q 043572 245 YSLFSCVTGQSGVIFT 260 (997)
Q Consensus 245 y~lidl~~g~~~~l~~ 260 (997)
..++|+.++.....+.
T Consensus 242 i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCceeeeec
Confidence 8899999887766665
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.12 E-value=0.26 Score=53.88 Aligned_cols=241 Identities=10% Similarity=-0.013 Sum_probs=126.4
Q ss_pred eeeeEEee--------cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 32 LSISPISD--------CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 32 ~~I~ci~~--------~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
..|+|++. .++.|+-|+.||.+..|.+....... ....+...+. -...+|..+..-|+...+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-------~~~~~~~~l~---~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-------YFGIPHKALT---GHNHFVSDLALSQENCFA 91 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-------BSEEEEEEEC---CCSSCEEEEEECSSTTEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-------ccccccchhc---cCCCceEEEEECCCCCEE
Confidence 46888875 35679999999999999986543110 0001111111 256689999998888755
Q ss_pred EEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+.+-.|++|++|++..-.++..+. -...|..++..+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp------------------------------------------- 128 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP------------------------------------------- 128 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-------------------------------------------
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-------------------------------------------
Confidence 554558999999987644332221 112233333322
Q ss_pred cchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEeC------------CEEEEEE-CCcEEEE
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWLN------------DSIIVGT-VNGYSLF 248 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~~------------~~l~vg~-~~~y~li 248 (997)
++...+.....+.|.+|...........+. ...+.+.++.|.. ..++.|. .....+.
T Consensus 129 ---------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 129 ---------DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp ---------STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred ---------CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 122223333455688887764322221111 1234567787764 2455554 4567778
Q ss_pred EecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEECC
Q 043572 249 SCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGG 323 (997)
Q Consensus 249 dl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~ 323 (997)
|. ++.....+.. .........+..++.+|++ .|+...+.|. .+......+.-......+++. .+++.+-.++
T Consensus 200 d~-~~~~~~~~~~--h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~ 276 (343)
T 2xzm_R 200 NT-NFQIRYTFKA--HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ 276 (343)
T ss_dssp ET-TTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESS
T ss_pred cC-CCceeEEEcC--ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCC
Confidence 84 2332222221 1111122334434455554 3556666675 222111111112223344443 3466666788
Q ss_pred eEEEEecCCCceEE
Q 043572 324 KMELYHKKSGICVQ 337 (997)
Q Consensus 324 ~ieI~~~~~~~lvQ 337 (997)
.|.|.++.++....
T Consensus 277 ~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 277 GVKIFNLMTQSKAP 290 (343)
T ss_dssp CEEEEESSSCCSCS
T ss_pred CEEEEEeCCCCCCc
Confidence 99999998876655
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.11 E-value=0.14 Score=57.26 Aligned_cols=231 Identities=11% Similarity=0.078 Sum_probs=128.3
Q ss_pred EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEEEEecCCeEEEe
Q 043572 37 ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVLLLFCDQCLFLT 115 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lLv~l~d~~l~~~ 115 (997)
+...++.|+.|+.+|.+..|....... ... +....+..+...+ +.+.++++-.|+.|.+|
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDG--------------SKM-----LKRADYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEET--------------TTT-----SCSCCEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred eeecCCeEEEEEcCCcEEEEEecccce--------------eeE-----EecCCceEEEEEecCCCEEEEEECCCCEEEE
Confidence 344578899999999999998764321 111 1222566665554 45545554457899999
Q ss_pred ecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCc
Q 043572 116 DSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGD 194 (997)
Q Consensus 116 ~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 194 (997)
++..-.+.... .-...|+.++..+ ++
T Consensus 125 d~~~~~~~~~~~~h~~~v~~~~~~~----------------------------------------------------~~- 151 (420)
T 3vl1_A 125 DSNFNLQREIDQAHVSEITKLKFFP----------------------------------------------------SG- 151 (420)
T ss_dssp CTTSCEEEEETTSSSSCEEEEEECT----------------------------------------------------TS-
T ss_pred eCCCcceeeecccccCccEEEEECC----------------------------------------------------CC-
Confidence 98764433222 2223345444332 11
Q ss_pred eEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCCCCC--
Q 043572 195 NVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCP-- 267 (997)
Q Consensus 195 ~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~-- 267 (997)
..++.+.. ..|.+|.+..++. .+.+. ....+.+++|.. ..|+.|.. ....++|+.++.....+........
T Consensus 152 ~~l~s~s~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 152 EALISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SEEEEEETTSEEEEEETTTCCC--CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CEEEEEeCCCeEEEEeCCCCcC--ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 13444444 5688888765422 22222 345789999984 45777765 4588999988876555543211000
Q ss_pred ------------------Cc--eEEcCCCCeEEEE-e-CCeEEEEcc-CCCccccc-cccCCCCCeEEEeCc---EEEEE
Q 043572 268 ------------------PM--LKLLSKEQKVLLL-V-DNVGVFVDA-HGQPVGGS-LVFRKSPDAVGELSM---YVVVL 320 (997)
Q Consensus 268 ------------------p~--i~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~-i~w~~~P~~i~~~~P---Yll~~ 320 (997)
.. ...+..++.++++ . |+...+.|. .|...... -........+++... ++++-
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 00 1112234455554 3 445566665 33322211 112233445666543 66665
Q ss_pred E-CCeEEEEecCCCc-eEEEEec
Q 043572 321 R-GGKMELYHKKSGI-CVQAVTF 341 (997)
Q Consensus 321 ~-~~~ieI~~~~~~~-lvQ~i~~ 341 (997)
. ++.|.|+++.++. .++++..
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEE
T ss_pred eCCCeEEEEEcCCCcCchhhhhc
Confidence 5 5789999999874 4777764
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.053 Score=60.63 Aligned_cols=243 Identities=11% Similarity=0.057 Sum_probs=127.5
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|..... ....+. -...+|..+...|+.+.++++-.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~---------------~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~ 169 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA---------------LLNVLN---FHRAPIVSVKWNKDGTHIISMDV 169 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC---------------EEEEEC---CCCSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------------eeeecc---CCCccEEEEEECCCCCEEEEEec
Confidence 3478898865 568999999999999972211 111111 25678999999999887777566
Q ss_pred CCeEEEeecCccccccccccccce-EEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGI-SVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|++....++.......+. ..+.......+ ...+..+.
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~---- 213 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGD--------------------------------GSLGVDVE---- 213 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC-----------------------------------------------CCCBSCCE----
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceeeccccCC--------------------------------cceeeEEE----
Confidence 899999998765433221110000 00000000000 00000000
Q ss_pred ccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 188 EQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 188 ~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
+ ..+ ...++......|.+|....+... ..+. ....+.++.|.. ..|++|.. ....++|+.++.....+....
T Consensus 214 ~-~~~-~~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 289 (425)
T 1r5m_A 214 W-VDD-DKFVIPGPKGAIFVYQITEKTPT--GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289 (425)
T ss_dssp E-EET-TEEEEECGGGCEEEEETTCSSCS--EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS
T ss_pred E-cCC-CEEEEEcCCCeEEEEEcCCCcee--eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC
Confidence 0 001 12233334456777777654222 2221 345678999984 45777764 568899998776555553221
Q ss_pred CCCCCceEEcCCCCeEEEEe-CCeEEEEcc-CCCcccccccc-CCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCc
Q 043572 264 VSCPPMLKLLSKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGI 334 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~ 334 (997)
.......+..++.++.+. ++...+.|. .|.... .+.- ...+..+.+. ..++++.. ++.|.|+++.++.
T Consensus 290 --~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 290 --QSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA-LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp --SCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE-EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred --ccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE-ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 111122223333444443 455556665 333321 2222 2233344444 44676655 5789999998877
No 47
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.02 E-value=0.15 Score=56.56 Aligned_cols=225 Identities=9% Similarity=0.046 Sum_probs=134.0
Q ss_pred eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCCeEEEeecCccc
Q 043572 43 LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQCLFLTDSLLTQ 121 (997)
Q Consensus 43 ~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~~l~~~~l~~l~ 121 (997)
.++.|+.+|.+..|...... ....+. ....+..+.+-|+.+.++++- .|++|++|++...+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~--------------~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNK--------------VTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--------------EEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCCe--------------EEEEee----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe
Confidence 35667889999998876432 111111 233588888888888665633 47899999987655
Q ss_pred cccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEE
Q 043572 122 PLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII 201 (997)
Q Consensus 122 ~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~ 201 (997)
....+..-..+..++..+ ++ ..++++.
T Consensus 66 ~~~~~~~~~~v~~~~~sp----------------------------------------------------dg-~~l~~~~ 92 (391)
T 1l0q_A 66 VIATVPAGSSPQGVAVSP----------------------------------------------------DG-KQVYVTN 92 (391)
T ss_dssp EEEEEECSSSEEEEEECT----------------------------------------------------TS-SEEEEEE
T ss_pred EEEEEECCCCccceEECC----------------------------------------------------CC-CEEEEEE
Confidence 433222222444444322 11 2355555
Q ss_pred C--ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE--CCcEEEEEecCCcceeeecCCCCCCCCceEEcCC
Q 043572 202 G--KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSK 275 (997)
Q Consensus 202 k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~ 275 (997)
. ..|.+|....++. .+.+.....+.+++|.. ..++++. .....++|+.+++....+.... .|....+..
T Consensus 93 ~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~ 167 (391)
T 1l0q_A 93 MASSTLSVIDTTSNTV--AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTP 167 (391)
T ss_dssp TTTTEEEEEETTTTEE--EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECT
T ss_pred CCCCEEEEEECCCCeE--EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECC
Confidence 3 5677777665533 33444566788999984 3565553 4578999998887766666532 233344443
Q ss_pred CCeEE-EEe--CCeEEEEccCCCccccccccCCCCCeEEEe--CcEEEEEE----CCeEEEEecCCCceEEEEecCC
Q 043572 276 EQKVL-LLV--DNVGVFVDAHGQPVGGSLVFRKSPDAVGEL--SMYVVVLR----GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 276 ~~e~L-l~~--~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~--~PYll~~~----~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++..+ ++. ++...++|.........+.-...|..+++. ..++++.. .+.|.|+++.++..++.++...
T Consensus 168 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 244 (391)
T 1l0q_A 168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC
Confidence 33444 442 345666675433221233334456666665 34676654 5789999999999998887644
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.062 Score=60.13 Aligned_cols=237 Identities=10% Similarity=0.010 Sum_probs=128.6
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc-cCcEEEE
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD-VGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~-~~~lLv~ 106 (997)
....|+|++.. ++.|+.|+.+|.+..|.+....... .....+. -...+|..+...|+ .+.++.+
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~----------~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI----------NSMARFS---NHSSSVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCC----------CEEEECC---CSSSCCCEEEECSSSTTBEEEE
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccc----------cchhhcc---CCccceEEEEEcCCCCCEEEEE
Confidence 34678998864 5579999999999999887532110 0111111 25668999999998 5544454
Q ss_pred ecCCeEEEeecCcccc------cccc----ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 107 FCDQCLFLTDSLLTQP------LKKL----GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~------~~~~----~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
-.|++|++|++..... .... .....+..++..+
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------- 175 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ------------------------------------- 175 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-------------------------------------
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-------------------------------------
Confidence 4578999999976541 1011 0111122222211
Q ss_pred cccCCccchhcccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-------CCcceEEEEeCC---EEEEEECC--
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-------MDGVKTMVWLND---SIIVGTVN-- 243 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-------~~~~~~l~~~~~---~l~vg~~~-- 243 (997)
++...++++ ....|.+|....++.. ..+.. ...+.++.|..+ .++.|...
T Consensus 176 ---------------~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 176 ---------------SLAHVFASAGSSNFASIWDLKAKKEV--IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp ---------------SCTTEEEEESSSSCEEEEETTTTEEE--EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ---------------CCCcEEEEEcCCCCEEEEECCCCCcc--eEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 111233333 3455888877665332 33333 456899999843 47777665
Q ss_pred --cEEEEEecCCc-ceeeecCCCCCCCCceEEcCC-CCeEEEE-e-CCeEEEEcc-CCCcccccccc-CCCCCeEEEeC-
Q 043572 244 --GYSLFSCVTGQ-SGVIFTLPDVSCPPMLKLLSK-EQKVLLL-V-DNVGVFVDA-HGQPVGGSLVF-RKSPDAVGELS- 314 (997)
Q Consensus 244 --~y~lidl~~g~-~~~l~~~~~~~~~p~i~~~~~-~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~~- 314 (997)
...++|+.++. ....+.. ..........+.. ++.+|++ . |+...+.|. .|.+.+ ++.- ......+.+..
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS-QFPARGNWCFKTKFAPE 316 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE-EEECSSSCCCCEEECTT
T ss_pred CceEEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce-eecCCCCceEEEEECCC
Confidence 78899998753 2222220 1111112222322 3344443 3 456666664 343322 2221 23345666654
Q ss_pred -c-EEEEEE-CCeEEEEecCCCce
Q 043572 315 -M-YVVVLR-GGKMELYHKKSGIC 335 (997)
Q Consensus 315 -P-Yll~~~-~~~ieI~~~~~~~l 335 (997)
| ++++.. ++.|.|+++.++..
T Consensus 317 ~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 317 APDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCEEEEEecCCcEEEEEccCCCC
Confidence 2 444333 57899999877543
No 49
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.00 E-value=0.086 Score=56.80 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=38.1
Q ss_pred CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEEecCCcceeeecC
Q 043572 202 GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 202 kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lidl~~g~~~~l~~~ 261 (997)
...|.+|....++ ..+.+..+..+..+.|.. +.|+++ .....++|+.+++....++.
T Consensus 114 ~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~ 172 (337)
T 1pby_B 114 PTRVALYDAETLS--RRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPI 172 (337)
T ss_dssp CCEEEEEETTTTE--EEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECS
T ss_pred CceEEEEECCCCc--EEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeec
Confidence 4677777765543 334455566788888873 447777 67899999988876544443
No 50
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.98 E-value=0.11 Score=58.66 Aligned_cols=237 Identities=8% Similarity=0.021 Sum_probs=132.1
Q ss_pred eeEEeec-CCeEEE-EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCC
Q 043572 34 ISPISDC-QVLIYI-GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQ 110 (997)
Q Consensus 34 I~ci~~~-~~~l~i-GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~ 110 (997)
+.|++.. ++.+++ |+.+|.+..|......... ......+ . -...+|..+..-++.. ++++- .|+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~--------~~~~~~~-~---~~~~~v~~~~~~~~~~-~~~s~~~d~ 191 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR--------LSPPEKY-K---KKLGFVETISIPEHNE-LWVSQMQAN 191 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--------ECCCHHH-H---TTCCEEEEEEEGGGTE-EEEEEGGGT
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--------ecCcccc-c---ccCCceeEEEEcCCCE-EEEEECCCC
Confidence 4455543 555555 4567788888766432100 0000011 1 1345788888755544 66533 368
Q ss_pred eEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|++|++...+++..+. ....+..++.++.
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 222 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPI------------------------------------------------- 222 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETT-------------------------------------------------
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCC-------------------------------------------------
Confidence 99999987655433221 1223444443321
Q ss_pred ccCCceEEEEEE--CceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEE---------CCcEEEEEecCCcce
Q 043572 190 HCRGDNVFAVII--GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGT---------VNGYSLFSCVTGQSG 256 (997)
Q Consensus 190 ~~~~~~~l~Va~--kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~---------~~~y~lidl~~g~~~ 256 (997)
+ ..++++. ...|.+|....++ ..+.+.....+.++.|. ++.++++. .....++|+.++...
T Consensus 223 ---~-~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 223 ---R-DLVYCSNWISEDISVIDRKTKL--EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp ---T-TEEEEEETTTTEEEEEETTTTE--EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred ---C-CEEEEEecCCCcEEEEECCCCc--EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 1 1244444 3566676665443 33445455668889887 34677775 346778999888665
Q ss_pred eeecCCCCCCCCceEEcCCCC-eEEEE--eCCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEEC--------
Q 043572 257 VIFTLPDVSCPPMLKLLSKEQ-KVLLL--VDNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLRG-------- 322 (997)
Q Consensus 257 ~l~~~~~~~~~p~i~~~~~~~-e~Ll~--~~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~~-------- 322 (997)
..+.... .|.-..+..++ .++++ .++...+++.. |... ..+.-...|..+++. ..++++...
T Consensus 297 ~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 297 DTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp EEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE-EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred eeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE-EEecCCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 5543321 23333343333 44444 24566667765 3332 234444556677776 347776654
Q ss_pred --------CeEEEEecCCCceEEEEecC
Q 043572 323 --------GKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 323 --------~~ieI~~~~~~~lvQ~i~~~ 342 (997)
+.|.++++.++..++.+...
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~~ 400 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEAG 400 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred cccccccceEEEEEECCCCcEEEEecCC
Confidence 38999999999999988763
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.079 Score=59.22 Aligned_cols=244 Identities=11% Similarity=0.093 Sum_probs=133.6
Q ss_pred eeeeEEeec--CC-eEEEE----------cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec
Q 043572 32 LSISPISDC--QV-LIYIG----------TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD 98 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iG----------T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~ 98 (997)
..|.|++.. +. .|+.| +.+|.+..|.+...... +...... ...+|..+..-|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----------~~~~~~~----~~~~v~~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----------KPIASLQ----VDSKFNDLDWSH 77 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----------SCSCCCC----CSSCEEEEEECS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-----------cEEEEEe----cCCceEEEEECC
Confidence 456676654 33 68888 78889999988754311 0011111 456899999999
Q ss_pred ccCcEEEEecCCeEEEeecCccc----cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhc
Q 043572 99 DVGKVLLLFCDQCLFLTDSLLTQ----PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKF 173 (997)
Q Consensus 99 ~~~~lLv~l~d~~l~~~~l~~l~----~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 173 (997)
+...++++-.|+.|++|++.... +...+. ....++.++..+.
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--------------------------------- 124 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK--------------------------------- 124 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS---------------------------------
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC---------------------------------
Confidence 88877665568999999987621 111111 1112333332210
Q ss_pred cCccccCCccchhcccccCCceEEEEE-ECceEEEEEEeCCe------E-EEEEe-EecCCcceEEEEeCC---EEEEEE
Q 043572 174 GSGIKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELVNGS------F-VILKE-IQCMDGVKTMVWLND---SIIVGT 241 (997)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~------~-~~~ke-i~~~~~~~~l~~~~~---~l~vg~ 241 (997)
++ ..++.+ ....|.+|.+..+. - ..... ......+.+++|..+ .++.|.
T Consensus 125 ------------------~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 125 ------------------QD-NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp ------------------ST-TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred ------------------CC-CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence 01 123333 33457777665432 1 11111 123457799999853 466654
Q ss_pred -CCcEEEEEecCCcceeeecCCCC----CCCCceEEc-CCCC-eEEEEeCC----eEEEEccC-CCccccccc--cCCCC
Q 043572 242 -VNGYSLFSCVTGQSGVIFTLPDV----SCPPMLKLL-SKEQ-KVLLLVDN----VGVFVDAH-GQPVGGSLV--FRKSP 307 (997)
Q Consensus 242 -~~~y~lidl~~g~~~~l~~~~~~----~~~p~i~~~-~~~~-e~Ll~~~~----~g~fv~~~-G~~~r~~i~--w~~~P 307 (997)
.....++|+.++.....+..... ........+ ++++ .++.+.++ ...+.|.. |......+. -...+
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v 265 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI 265 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE
T ss_pred CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce
Confidence 45699999988776555554321 111122223 3332 34444433 45555653 221111222 22334
Q ss_pred CeEEEe---CcEEEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 308 DAVGEL---SMYVVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 308 ~~i~~~---~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
..+.+. ..++++.. ++.|.|+++.++..++++.-.
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 566664 34666655 678999999999999888653
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.96 E-value=0.18 Score=55.21 Aligned_cols=203 Identities=9% Similarity=-0.019 Sum_probs=114.6
Q ss_pred cCCCcceEEEeecccCcEEEEecCCeEEEeecCccc--cccccc-cccceEEEEeecccCCccccccccccccccccccC
Q 043572 86 VADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ--PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANAS 162 (997)
Q Consensus 86 ~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~--~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (997)
+...+|..+..-|+.+.++++-.|+.|++|++..-+ +...+. ....++.++..+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~----------------------- 62 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----------------------- 62 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----------------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-----------------------
Confidence 366789999999998866664478999999986643 222221 112233333322
Q ss_pred CcccchhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEe-EecCCcceEEEEe--CCEEE
Q 043572 163 TSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKE-IQCMDGVKTMVWL--NDSII 238 (997)
Q Consensus 163 s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~ke-i~~~~~~~~l~~~--~~~l~ 238 (997)
++ ..++++. ...|.+|.+..++...... ......+.++.|. ++.++
T Consensus 63 -----------------------------~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 112 (372)
T 1k8k_C 63 -----------------------------DS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 112 (372)
T ss_dssp -----------------------------TT-TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------CC-CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEE
Confidence 11 2344444 4568899987775544332 2245578999998 44677
Q ss_pred EEEC-CcEEEEEecCCccee---eecCCCCCCCCceEEcCCCCeEE-EEe-CCeEEEEccC-------------------
Q 043572 239 VGTV-NGYSLFSCVTGQSGV---IFTLPDVSCPPMLKLLSKEQKVL-LLV-DNVGVFVDAH------------------- 293 (997)
Q Consensus 239 vg~~-~~y~lidl~~g~~~~---l~~~~~~~~~p~i~~~~~~~e~L-l~~-~~~g~fv~~~------------------- 293 (997)
+|.. ....++|+.++.... .+..+. ........+..++.++ .+. |+...+.|..
T Consensus 113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 113 VGSGSRVISICYFEQENDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEECTTC-CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred EEeCCCEEEEEEecCCCcceeeeeeeccc-CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 7765 568889998776322 222111 1111222233233444 443 4555566632
Q ss_pred CCccccccc-cCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 294 GQPVGGSLV-FRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 294 G~~~r~~i~-w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
|.+.+ .+. -......+.+. ..++++.. ++.|.|+++.++..++++....
T Consensus 192 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 192 GELMF-ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp TCEEE-ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred hhheE-ecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 22111 111 11223344553 34777665 5789999999999998887544
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.92 E-value=0.12 Score=62.95 Aligned_cols=244 Identities=14% Similarity=0.073 Sum_probs=134.9
Q ss_pred eeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 31 SLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
...|+|++.. ++.|+-|+.||.+..|.+.......+ .....+. -+..+|..+...|+.+.++.+-
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~---------~~~~~~~---~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG---------VAQRRLT---GHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC---------EEEEEEE---CCSSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc---------cccceec---CCCCcEEEEEECCCCCEEEEEe
Confidence 3578898864 24688999999999999875432100 0111111 2567899999999888666656
Q ss_pred cCCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.|++|++|++..-.....+ .-...|..++..+
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~----------------------------------------------- 482 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL----------------------------------------------- 482 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-----------------------------------------------
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-----------------------------------------------
Confidence 6899999998764332221 1122344444322
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeE--ecCCcceEEEEeCC----EEEEEE-CCcEEEEEecCCcceeee
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI--QCMDGVKTMVWLND----SIIVGT-VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei--~~~~~~~~l~~~~~----~l~vg~-~~~y~lidl~~g~~~~l~ 259 (997)
++...+.....+.|.+|...........+. ...+.+.++.|..+ .++.|. .+...+.|+.++.....+
T Consensus 483 -----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 557 (694)
T 3dm0_A 483 -----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557 (694)
T ss_dssp -----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE
Confidence 111222223344577766543322221110 11235788888743 355554 567899999877654444
Q ss_pred cCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCCc
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSGI 334 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~~ 334 (997)
.-. ...-....+..++.+|++ .|+...+.|. .|.... ++.-......+.+. ..++.+-..+.|.|.++.++.
T Consensus 558 ~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 558 AGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-SLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp CCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-CCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred cCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence 321 111112233334455544 3455556664 343321 22222223333433 235666678899999999999
Q ss_pred eEEEEec
Q 043572 335 CVQAVTF 341 (997)
Q Consensus 335 lvQ~i~~ 341 (997)
+++.+..
T Consensus 635 ~~~~~~~ 641 (694)
T 3dm0_A 635 IVEDLKV 641 (694)
T ss_dssp EEEEECC
T ss_pred Chhhhcc
Confidence 9988754
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.91 E-value=0.59 Score=50.14 Aligned_cols=241 Identities=11% Similarity=0.017 Sum_probs=127.1
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++.. ++.|+-|+.||.+..+.+.......+ .+...++ -...+|..+..-|+...++.+-.
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------~~~~~l~---~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------IPQRALR---GHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------EEEEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------eeeEEEe---CCCCCEEEEEECCCCCEEEEEcc
Confidence 579999975 34677899999999999976543110 1111111 24678999999999887777667
Q ss_pred CCeEEEeecCccccccccccc-cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFL-KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~-kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+.+|+............. ..+......+
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 138 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS------------------------------------------------ 138 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECT------------------------------------------------
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEee------------------------------------------------
Confidence 899999987664322211111 1111111100
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC---CEE-EEE-ECCcEEEEEecCCcceeeecC
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN---DSI-IVG-TVNGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~---~~l-~vg-~~~~y~lidl~~g~~~~l~~~ 261 (997)
.+ ..++.+. .+.+.+|..............-.+.+..+.|.. +.+ +.| ......+.|+.++.....+..
T Consensus 139 ----~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~ 213 (340)
T 4aow_A 139 ----DN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213 (340)
T ss_dssp ----TS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred ----cC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC
Confidence 11 1233333 344666554333222211111234566777653 223 333 335678889887765444432
Q ss_pred CCCCCCCc-eEEcCCCCeEEEE--eCCeEEEEccCC-CccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCCce
Q 043572 262 PDVSCPPM-LKLLSKEQKVLLL--VDNVGVFVDAHG-QPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSGIC 335 (997)
Q Consensus 262 ~~~~~~p~-i~~~~~~~e~Ll~--~~~~g~fv~~~G-~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~~l 335 (997)
.. .++ ...+..++.+|++ .|+...+.|... .+.+ .+.-......+.+. ..++.+-.++.|.|+++.++..
T Consensus 214 h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 214 HT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY-TLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp CS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE-EEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred CC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee-eecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence 11 121 2233334455544 345555666532 2211 22222222233332 1244455688999999999988
Q ss_pred EEEEec
Q 043572 336 VQAVTF 341 (997)
Q Consensus 336 vQ~i~~ 341 (997)
++.+.-
T Consensus 290 ~~~~~~ 295 (340)
T 4aow_A 290 VDELKQ 295 (340)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 887753
No 55
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.90 E-value=0.15 Score=57.36 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=124.0
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cC
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CD 109 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d 109 (997)
.|.|++. .++.++.|+.+|.+..|....... ..... .....+..+..-|+.+.++++- .|
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~--------------~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAY--------------KATVD---LTGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE--------------EEEEE---CSSSSEEEEEEETTTTEEEEEETTT
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceE--------------EEEEc---CCCCCeeEEEEcCCCCEEEEEecCC
Confidence 6777775 344577778899999988764321 11111 1455788999999888676634 36
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+.|++|++...+++..+....++..++.++.
T Consensus 234 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 264 (433)
T 3bws_A 234 EDISVIDRKTKLEIRKTDKIGLPRGLLLSKD------------------------------------------------- 264 (433)
T ss_dssp TEEEEEETTTTEEEEECCCCSEEEEEEECTT-------------------------------------------------
T ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEcCC-------------------------------------------------
Confidence 8999999876554433332233444443321
Q ss_pred ccCCceEEEEEE---------CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE--CCcEEEEEecCCcce
Q 043572 190 HCRGDNVFAVII---------GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVTGQSG 256 (997)
Q Consensus 190 ~~~~~~~l~Va~---------kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~g~~~ 256 (997)
+ ..++++. ...|.+|....++.. +.+..+..+.+++|.. +.++++. .....++|+.++...
T Consensus 265 ---g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 265 ---G-KELYIAQFSASNQESGGGRLGIYSMDKEKLI--DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp ---S-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE--EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred ---C-CEEEEEECCCCccccCCCeEEEEECCCCcEE--eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 1 1234433 346667776655333 3333455778888874 3566653 457889999888766
Q ss_pred eeecCCCCCCCCceEEcCCCCeEE-EEeCC----------------eEEEEcc-CCCccccccccCCCCCeEEEe--CcE
Q 043572 257 VIFTLPDVSCPPMLKLLSKEQKVL-LLVDN----------------VGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMY 316 (997)
Q Consensus 257 ~l~~~~~~~~~p~i~~~~~~~e~L-l~~~~----------------~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PY 316 (997)
..++... .|.-..+..++.++ ++... ...++|. .|...+ .+.-...|..+++. ..|
T Consensus 339 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 339 KSIPVFD---KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE-FWEAGNQPTGLDVSPDNRY 414 (433)
T ss_dssp EEEECSS---SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE-EEECSSSEEEEEECTTSCE
T ss_pred EEecCCC---CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE-EecCCCCCceEEEcCCCCE
Confidence 6665432 23333444344444 44321 4444554 333322 22223445555553 346
Q ss_pred EEEEE--CCeEEEEecC
Q 043572 317 VVVLR--GGKMELYHKK 331 (997)
Q Consensus 317 ll~~~--~~~ieI~~~~ 331 (997)
+++.. ++.|.|+++.
T Consensus 415 l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 415 LVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEETTTTEEEEEEET
T ss_pred EEEEECCCCeEEEEEec
Confidence 66543 4667776654
No 56
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.053 Score=66.82 Aligned_cols=237 Identities=10% Similarity=0.010 Sum_probs=130.8
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... .....+. -.+.+|..+...+. .+.++.+
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~------------~~~~~l~---~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------KLIDTLT---GHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCTTSCSEEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC------------ccceecc---CCcCceEEEEecCCCCCCEEEEE
Confidence 4578888854 66799999999999998874321 1111111 25678999999887 6666665
Q ss_pred ecCCeEEEeecCccc--ccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FCDQCLFLTDSLLTQ--PLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~d~~l~~~~l~~l~--~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
-.||+|++|++..-. ++... .....++.++..+..
T Consensus 74 s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~------------------------------------------ 111 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE------------------------------------------ 111 (753)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG------------------------------------------
T ss_pred eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC------------------------------------------
Confidence 668999999986633 11111 112234444432210
Q ss_pred chhcccccCCceEEEEEEC-ceEEEEEEeCCeEE-EEEeEecCCcceEEEEeC---------------CEEEEEEC-CcE
Q 043572 184 VKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFV-ILKEIQCMDGVKTMVWLN---------------DSIIVGTV-NGY 245 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~-~~kei~~~~~~~~l~~~~---------------~~l~vg~~-~~y 245 (997)
++ ..++++.. ..|.+|.+..+... ...-...+..+.++.|.. +.+++|.. ...
T Consensus 112 --------~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I 182 (753)
T 3jro_A 112 --------YG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (753)
T ss_dssp --------GC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCE
T ss_pred --------CC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeE
Confidence 01 23444444 56888887655211 111122356788898874 45777765 568
Q ss_pred EEEEecCCcce--eeecCCCCCCCCceEEcCCC---CeEEEE--eCCeEEEEccCCC-cc-c-ccc---ccCCCCCeEEE
Q 043572 246 SLFSCVTGQSG--VIFTLPDVSCPPMLKLLSKE---QKVLLL--VDNVGVFVDAHGQ-PV-G-GSL---VFRKSPDAVGE 312 (997)
Q Consensus 246 ~lidl~~g~~~--~l~~~~~~~~~p~i~~~~~~---~e~Ll~--~~~~g~fv~~~G~-~~-r-~~i---~w~~~P~~i~~ 312 (997)
.++|+.++... .+..............+.++ +.++++ .|+...+.|.... .. . ... ........+++
T Consensus 183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 262 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (753)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE
T ss_pred EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE
Confidence 89999877432 22222221111122233333 466665 3455666665432 11 1 111 12344555665
Q ss_pred e--CcEEEEEE-CCeEEEEecCCC
Q 043572 313 L--SMYVVVLR-GGKMELYHKKSG 333 (997)
Q Consensus 313 ~--~PYll~~~-~~~ieI~~~~~~ 333 (997)
. ..++++.. ++.|.|+++.++
T Consensus 263 spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 263 SLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CTTTCCEEEECSSSCEECCBCCSS
T ss_pred cCCCCEEEEEcCCCEEEEEecCCC
Confidence 4 34666554 567888888754
No 57
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.86 E-value=0.11 Score=58.16 Aligned_cols=239 Identities=13% Similarity=0.152 Sum_probs=127.1
Q ss_pred ceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEE
Q 043572 30 RSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLL 105 (997)
Q Consensus 30 ~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv 105 (997)
....|+|++.. ++.|+.|+.||.+..|.+........ .......+. -...+|..|...|..+ .++.
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-------~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-------LREPVITLE---GHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-------BCSCSEEEE---CCSSCEEEEEECSSBTTEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-------cCCceEEec---CCCCeEEEEEECcCCCCEEEE
Confidence 34679999874 56899999999999999876532100 001111111 2567899999999974 4444
Q ss_pred EecCCeEEEeecCcccccccc--c-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 106 LFCDQCLFLTDSLLTQPLKKL--G-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l~~~~~~--~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+-.|++|.+|++..-+++..+ . ....++.++..+
T Consensus 150 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------- 186 (402)
T 2aq5_A 150 AGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR------------------------------------------- 186 (402)
T ss_dssp EETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-------------------------------------------
T ss_pred EcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-------------------------------------------
Confidence 445889999999875544333 1 122344444332
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeE-ecC-C-cceEEEEeCC--EEEEE----ECCcEEEEEecC
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEI-QCM-D-GVKTMVWLND--SIIVG----TVNGYSLFSCVT 252 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei-~~~-~-~~~~l~~~~~--~l~vg----~~~~y~lidl~~ 252 (997)
++. .++++. .+.|.+|....+.. ...+ ... + .+.++.|..+ .+++| ......++|+.+
T Consensus 187 ---------~~~-~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 187 ---------DGA-LICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp ---------TSS-CEEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred ---------CCC-EEEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 111 234443 45688887765532 3333 122 2 3688888853 36666 345788999987
Q ss_pred Ccc-eeeecCCCCCCCCceEEcCCCCeEE-EEe--CCeEEEEccC-CCc-ccc--ccccCCCCCeEEEeCcEEEEE-ECC
Q 043572 253 GQS-GVIFTLPDVSCPPMLKLLSKEQKVL-LLV--DNVGVFVDAH-GQP-VGG--SLVFRKSPDAVGELSMYVVVL-RGG 323 (997)
Q Consensus 253 g~~-~~l~~~~~~~~~p~i~~~~~~~e~L-l~~--~~~g~fv~~~-G~~-~r~--~i~w~~~P~~i~~~~PYll~~-~~~ 323 (997)
+.. ......+... ......+..++.+| ++. |+...+.+.. |.+ .+. ...-......+++..-..+.+ ..+
T Consensus 255 ~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~ 333 (402)
T 2aq5_A 255 LEEPLSLQELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE 333 (402)
T ss_dssp CSSCSEEEECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred ccCCceEEeccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence 654 2233332211 12222333333444 443 4555555543 332 111 111124445555543221111 234
Q ss_pred eEEEEecCCCc
Q 043572 324 KMELYHKKSGI 334 (997)
Q Consensus 324 ~ieI~~~~~~~ 334 (997)
.+.++.+.++.
T Consensus 334 ~~~~~~l~~~~ 344 (402)
T 2aq5_A 334 IARFYKLHERK 344 (402)
T ss_dssp EEEEEEEETTE
T ss_pred eEEEEEcCCCc
Confidence 56666666643
No 58
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.83 E-value=0.56 Score=50.71 Aligned_cols=143 Identities=13% Similarity=-0.010 Sum_probs=84.4
Q ss_pred EEEEE---CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 197 FAVII---GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 197 l~Va~---kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
++++. ..+|.+|....+ ...+.+. ....+..+.|. ++.++++.. ....++|+.+++....++.+..+..+.
T Consensus 155 l~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNI--KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp EEEEEESSSCEEEEEETTTT--EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred EEEEecCCCceEEEEcCCCC--ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 55554 344555554443 3444454 23347778886 456888855 468889999888776666643322222
Q ss_pred --eEEc-CCCCeEEEEe-C-CeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCCCceEEEE
Q 043572 270 --LKLL-SKEQKVLLLV-D-NVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKSGICVQAV 339 (997)
Q Consensus 270 --i~~~-~~~~e~Ll~~-~-~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~~~lvQ~i 339 (997)
-..+ ++++.+.++. + +....+|. .|...+ .+.. ..|..+++. .-++++.. .+.|.|++..++..++.+
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-KVAA-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-EEEC-SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEEc-CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 2233 3333344443 2 45556675 344432 2332 335667765 34666665 578999999999999998
Q ss_pred ecCC
Q 043572 340 TFGG 343 (997)
Q Consensus 340 ~~~~ 343 (997)
+...
T Consensus 311 ~~~~ 314 (353)
T 3vgz_A 311 DTPT 314 (353)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 7754
No 59
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.82 E-value=0.21 Score=54.94 Aligned_cols=230 Identities=12% Similarity=0.039 Sum_probs=122.1
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
..|+|++.. ++.|+.|+.+|.+..|.+...... ........ -+..+|..+...|+.+.++.+-.|+
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~----~H~~~V~~v~~spdg~~l~sgs~d~ 149 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKY----EHDDIVSTVSVLSSGTQAVSGSKDI 149 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEE----CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeecccc----CCCCCEEEEEECCCCCEEEEEeCCC
Confidence 358888864 567999999999999998764420 00000011 1466899999999988666656688
Q ss_pred eEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|++|++..-.++..+.. ...|..++..+
T Consensus 150 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~-------------------------------------------------- 179 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASP-------------------------------------------------- 179 (344)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECS--------------------------------------------------
T ss_pred eEEEEECCCCcEEEEEcCcCCceEEEEecC--------------------------------------------------
Confidence 999999876544332211 22233333221
Q ss_pred ccCCceEEEEEE-CceEEEEEEeCCeE-EEEEeEecCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 190 HCRGDNVFAVII-GKRLVLIELVNGSF-VILKEIQCMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 190 ~~~~~~~l~Va~-kkki~i~~~~~~~~-~~~kei~~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
++...++.+. .+.|.+|....++. ..+....-...+.++.|.. ..++.|.. ....++|+.+++....+....
T Consensus 180 --~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~ 257 (344)
T 4gqb_B 180 --HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257 (344)
T ss_dssp --SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred --CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence 1112233333 45688877655422 2221111223468888873 24666765 458889998776443333211
Q ss_pred CCCCC-ceEEcC-CCCeEEEE--eCCeEEEEccCCCccccccccC---CCCCeEEEe--CcEEEEE-E-CCeEEEEecCC
Q 043572 264 VSCPP-MLKLLS-KEQKVLLL--VDNVGVFVDAHGQPVGGSLVFR---KSPDAVGEL--SMYVVVL-R-GGKMELYHKKS 332 (997)
Q Consensus 264 ~~~~p-~i~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~i~w~---~~P~~i~~~--~PYll~~-~-~~~ieI~~~~~ 332 (997)
.+ ....+. ++..+|++ .|....+.|..... .+... +....+++. .+++++- . ++.|-+..+.+
T Consensus 258 ---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 258 ---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 12 122333 33345543 34555555643211 11121 223344543 3566543 2 57788887766
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.80 E-value=0.062 Score=63.68 Aligned_cols=253 Identities=10% Similarity=0.017 Sum_probs=135.9
Q ss_pred cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 40 CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 40 ~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
.++.++.|+.+|.+..|...... ....++ -...+|..+.. |+ ++.+-.||.|.+|++..
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~--------------~~~~~~---~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~ 366 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDE--------------VLKTIS---GHNKGITALTV-NP---LISGSYDGRIMEWSSSS 366 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEE--------------EEEEEC---CCSSCEEEEET-TT---TEEEETTSCEEETTTTE
T ss_pred CCCeEEEEECCCCEEEEECCCCc--------------EEEEEe---CCCCCEEEEEe-cC---cEEECCCCeEEEEEchh
Confidence 68899999999999999876422 111111 25668999998 77 55546788999999873
Q ss_pred cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEE
Q 043572 120 TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAV 199 (997)
Q Consensus 120 l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~V 199 (997)
+. ......+..++..+.. .++.+. .....++++..+..... .+...+ ...++ ..+++
T Consensus 367 ~~----~~~~~~v~~~~~~~~~------~l~~~~---------~d~~i~~~~~~~~~~~~--~~~~~~-~s~~~-~~~~~ 423 (615)
T 1pgu_A 367 MH----QDHSNLIVSLDNSKAQ------EYSSIS---------WDDTLKVNGITKHEFGS--QPKVAS-ANNDG-FTAVL 423 (615)
T ss_dssp EE----CCCCSCEEEEECCSTT------CCEEEE---------TTTEEEETTEEEEECSS--CEEEEE-ECSSS-EEEEE
T ss_pred hc----CcccCceEEEEECCCc------EEEEEe---------CCCCEEEEEcccCcccC--CceEEE-EcCCC-CEEEE
Confidence 22 2223345555542110 000000 00000111100000000 000000 00111 23444
Q ss_pred EECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC--CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCC
Q 043572 200 IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQ 277 (997)
Q Consensus 200 a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~ 277 (997)
+..+.+.+|....+ ..++.+.....+.+++|.++.+++|.. ....++|+.++.... ..............+..++
T Consensus 424 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 424 TNDDDLLILQSFTG--DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp ETTSEEEEEETTTC--CEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTS
T ss_pred eCCCceEEEeccCC--ceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCC
Confidence 46677778776544 334455567788999999888999974 679999998665432 2222222222233344344
Q ss_pred eEEEE-e-CCeEEEEcc-CCCccccccc--cCCCCCeEEE------------eCcEEEEEE-CCeEEEEecCCC-ceEEE
Q 043572 278 KVLLL-V-DNVGVFVDA-HGQPVGGSLV--FRKSPDAVGE------------LSMYVVVLR-GGKMELYHKKSG-ICVQA 338 (997)
Q Consensus 278 e~Ll~-~-~~~g~fv~~-~G~~~r~~i~--w~~~P~~i~~------------~~PYll~~~-~~~ieI~~~~~~-~lvQ~ 338 (997)
.+|++ . |+...+.+. .|...+ ++. -......+++ ...+|++.. ++.|.|+++.++ ..+++
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 579 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 579 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred CEEEEcCCCCeEEEeeCCCCccee-EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh
Confidence 55554 3 445555665 444332 221 1233455566 345777665 578999999987 67777
Q ss_pred Ee
Q 043572 339 VT 340 (997)
Q Consensus 339 i~ 340 (997)
+.
T Consensus 580 ~~ 581 (615)
T 1pgu_A 580 LN 581 (615)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.79 E-value=0.049 Score=71.13 Aligned_cols=236 Identities=10% Similarity=0.004 Sum_probs=135.4
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..++|++. .++.+++|+.+|.+..|....... . ..+. -...+|..+...|+...++.+-.|
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-----------~--~~~~----~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-----------F--SSGV----GHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC-----------E--EECC----CCSSCCCCEEECSSSSCEEEECSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-----------e--eecc----cCCCceEEEEECCCCCEEEEEcCC
Confidence 35666654 467899999999999998865431 0 1111 156689999999998866665568
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
|++.+|++..-+..........+..++..+
T Consensus 1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-------------------------------------------------- 1054 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-------------------------------------------------- 1054 (1249)
T ss_dssp SBEEEEETTTTEEECCBCCSSCEEEEEECS--------------------------------------------------
T ss_pred CEEEEEECCCCceEEEecCCCcEEEEEEcC--------------------------------------------------
Confidence 899999987644322122222333333221
Q ss_pred ccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC--EEEEE-ECCcEEEEEecCCcceeeecCCCCC
Q 043572 190 HCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND--SIIVG-TVNGYSLFSCVTGQSGVIFTLPDVS 265 (997)
Q Consensus 190 ~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~--~l~vg-~~~~y~lidl~~g~~~~l~~~~~~~ 265 (997)
....++......+.+|....+... +.+. ..+.+.+++|..+ .++.| ......++|+.++.....+. ...
T Consensus 1055 ---~~~l~~~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~ 1127 (1249)
T 3sfz_A 1055 ---DSRLLSWSFDGTVKVWNVITGRIE--RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHN 1127 (1249)
T ss_dssp ---SSEEEEEESSSEEEEEETTTTCCC--EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCS
T ss_pred ---CCcEEEEECCCcEEEEECCCCcee--EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCC
Confidence 112334445566778777655322 2222 2456788888753 46666 44578888987775433222 111
Q ss_pred CCCceEEcCCCCeEEEE-e-CCeEEEEcc-CCCccccc---------cccCCCCCeEEEe--CcEEEEEECCeEEEEecC
Q 043572 266 CPPMLKLLSKEQKVLLL-V-DNVGVFVDA-HGQPVGGS---------LVFRKSPDAVGEL--SMYVVVLRGGKMELYHKK 331 (997)
Q Consensus 266 ~~p~i~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~---------i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~ 331 (997)
.......+..++.+|++ . |+...+.|. .|...+.. .........+++. ..|+++. .+.|.|.++.
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-~g~v~vwd~~ 1206 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNVA 1206 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-SSSEEEBCSS
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-CCeEEEEECC
Confidence 11122334434455554 3 344444554 45543310 1123345566665 3466554 4899999999
Q ss_pred CCceEEEEecC
Q 043572 332 SGICVQAVTFG 342 (997)
Q Consensus 332 ~~~lvQ~i~~~ 342 (997)
++..++++...
T Consensus 1207 ~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1207 TGDSSQTFYTN 1217 (1249)
T ss_dssp SCBCCCCCCCS
T ss_pred CCceeeeeecc
Confidence 99888877543
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.43 Score=50.50 Aligned_cols=238 Identities=12% Similarity=0.007 Sum_probs=125.0
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|.+....... ....+. -...+|..+.. +.+.++++-.
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------~~~~~~---~~~~~i~~~~~--~~~~l~~~~~ 122 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-----------PLYTLI---GHQGNVCSLSF--QDGVVISGSW 122 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-----------C-CEEC---CCSSCEEEEEE--ETTEEEEEET
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-----------cccchh---hcccCEEEEEe--cCCEEEEEeC
Confidence 4567787754 6689999999999999887654211 111111 15668888877 4555666556
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|+.. .+..... ....+..++..+.
T Consensus 123 d~~i~~~d~~--~~~~~~~~~~~~v~~~~~~~~----------------------------------------------- 153 (313)
T 3odt_A 123 DKTAKVWKEG--SLVYNLQAHNASVWDAKVVSF----------------------------------------------- 153 (313)
T ss_dssp TSEEEEEETT--EEEEEEECCSSCEEEEEEEET-----------------------------------------------
T ss_pred CCCEEEEcCC--cEEEecccCCCceeEEEEccC-----------------------------------------------
Confidence 8899999822 1111111 1112222222110
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEEC-CcEEEEEecCCcceeeecCCCC
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~ 264 (997)
++ ..++++. ...|.+|. .+.............+.++.|.. +.++.|.. ....++|+.+++....+....
T Consensus 154 ----~~-~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~- 225 (313)
T 3odt_A 154 ----SE-NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHE- 225 (313)
T ss_dssp ----TT-TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS-
T ss_pred ----CC-CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCC-
Confidence 11 1234443 34577766 33222222222455678898874 35666654 468889998876554444221
Q ss_pred CCCCceEEcCCCCeEEEEe-CCeEEEEcc-CCCccccccccCC-CCCeEEEe--CcEEEEEECCeEEEEecCCCceEEEE
Q 043572 265 SCPPMLKLLSKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVFRK-SPDAVGEL--SMYVVVLRGGKMELYHKKSGICVQAV 339 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w~~-~P~~i~~~--~PYll~~~~~~ieI~~~~~~~lvQ~i 339 (997)
.......+..++.++.+. |+...+.|. .|.+.+ .+.-.. ....+.+. ..++.+-.++.|.|+++.++.++...
T Consensus 226 -~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 226 -SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ-VITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp -SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEE-EEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred -ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeE-EEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 111122333333555554 456666664 444332 222222 22344443 23555556789999999988777666
Q ss_pred ecCC
Q 043572 340 TFGG 343 (997)
Q Consensus 340 ~~~~ 343 (997)
.+..
T Consensus 304 ~~~~ 307 (313)
T 3odt_A 304 EIKG 307 (313)
T ss_dssp ----
T ss_pred hhhh
Confidence 5543
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.74 E-value=0.42 Score=62.24 Aligned_cols=240 Identities=10% Similarity=0.016 Sum_probs=138.0
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...++ -...+|..+...|+.+.++++-.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--------------~~~~~---~h~~~v~~~~~s~~~~~l~s~~~ 677 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--------------LLDIK---AHEDEVLCCAFSSDDSYIATCSA 677 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--------------EEEec---cCCCCEEEEEEecCCCEEEEEeC
Confidence 3578888764 66899999999999998865431 11111 15668999999999886666556
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|++|.+|++..-.++.... ....++.++..+.
T Consensus 678 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------------------- 710 (1249)
T 3sfz_A 678 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK----------------------------------------------- 710 (1249)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------------------------------
T ss_pred CCeEEEEECCCCceEEEEcCCCCcEEEEEEecC-----------------------------------------------
Confidence 8899999987654433221 1122333332210
Q ss_pred ccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
+....++.+.. ..|.+|.+..+... ..+. ..+.+.+++|.. +.++.|.. ....+.|+.++.....+...
T Consensus 711 ----~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 711 ----SNHLLLATGSNDFFLKLWDLNQKECR--NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp ----SSCCEEEEEETTSCEEEEETTSSSEE--EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred ----CCceEEEEEeCCCeEEEEECCCcchh--heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 01123444443 45778877655322 2221 345678898884 45777755 56889999887654443322
Q ss_pred CC-----------CCCCceEEc-CCCCeEEEEeCCeEEEEccC-CCccccccc--cCCCCCeEEEe--CcEEEEEE-CCe
Q 043572 263 DV-----------SCPPMLKLL-SKEQKVLLLVDNVGVFVDAH-GQPVGGSLV--FRKSPDAVGEL--SMYVVVLR-GGK 324 (997)
Q Consensus 263 ~~-----------~~~p~i~~~-~~~~e~Ll~~~~~g~fv~~~-G~~~r~~i~--w~~~P~~i~~~--~PYll~~~-~~~ 324 (997)
.. ........+ +++..++++.++...+++.. |.... .+. -......+++. ..++++.. ++.
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA-EIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE-EEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee-EEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 10 001111223 33445555666666666653 33221 111 12333444443 34665543 678
Q ss_pred EEEEecCCCceEEEEec
Q 043572 325 MELYHKKSGICVQAVTF 341 (997)
Q Consensus 325 ieI~~~~~~~lvQ~i~~ 341 (997)
|.|.++.++..++++.-
T Consensus 864 v~vwd~~~~~~~~~~~~ 880 (1249)
T 3sfz_A 864 VELWNIDSRLKVADCRG 880 (1249)
T ss_dssp EEEEETTTTEEEEEECC
T ss_pred EEEEEcCCCceeeecCC
Confidence 99999999988877753
No 64
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.32 Score=55.43 Aligned_cols=165 Identities=10% Similarity=0.017 Sum_probs=97.4
Q ss_pred eeeEEeec--CCeE-EEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 33 SISPISDC--QVLI-YIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 33 ~I~ci~~~--~~~l-~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
.|+|++.. ++.| +.|+.+|.+..|.+...... ....+.. .-...+|..+..-|+...++++-.|
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~------------~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~ 170 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN------------VLKLRKR-FCFSKRPNAISIAEDDTTVIIADKF 170 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS------------CEEEEEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc------------eeeeeec-ccCCCCceEEEEcCCCCEEEEEeCC
Confidence 58888864 5565 78999999999999731110 0111110 0134679999999998877775567
Q ss_pred CeEEEeecCcccccc----ccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 110 QCLFLTDSLLTQPLK----KLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~----~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
+.+++|++....... .+. -...++.++..+..
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~------------------------------------------- 207 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDS------------------------------------------- 207 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECT-------------------------------------------
T ss_pred CcEEEEecCCcccccccceeeecccCceEEEEEcCCC-------------------------------------------
Confidence 899999987654332 111 12234555443310
Q ss_pred hhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeec
Q 043572 185 KEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~ 260 (997)
++...++.+. ...|.+|.+..+......-......|.+++|. +..|+.|.. ....++|+.+|+....++
T Consensus 208 -------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 208 -------DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp -------TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred -------CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 0012344443 45688888875532211011123567888886 556777754 578899999887655444
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.67 E-value=0.19 Score=57.14 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=49.6
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
..|+|++.+ ++.|..|+.||.+..|.+...... ....+.. ...+|..|..-|..+..|+ +-
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~~~~g----H~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFIKGIG----AGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEECCCS----SSCCCCEEEECSSCTTEEEEEC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEEEccC----CCCCEEEEEEeCCCCCEEEEEe
Confidence 469999975 346889999999999987654321 0111111 4668999999886444554 33
Q ss_pred cCCeEEEeecC
Q 043572 108 CDQCLFLTDSL 118 (997)
Q Consensus 108 ~d~~l~~~~l~ 118 (997)
.||+|.+|++.
T Consensus 185 ~D~~v~iwd~~ 195 (435)
T 4e54_B 185 MEGTTRLQDFK 195 (435)
T ss_dssp SSSCEEEEETT
T ss_pred CCCEEEEeecc
Confidence 48899999974
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.66 E-value=0.52 Score=55.53 Aligned_cols=243 Identities=12% Similarity=0.006 Sum_probs=135.2
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc-ceEEEeec--ccCcEE
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP-VESIFVLD--DVGKVL 104 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-I~qi~vl~--~~~~lL 104 (997)
....|+|++.. ++.|+.|+ +|.+..|.+....... +....+. -...+ |..+..-| +.+.++
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~----------~~~~~~~---~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV----------PPVVQFT---GHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS----------CSEEEEC---TTTTSCEEEEEECSSTTCCEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc----------ccceEEe---cCCCceEEEEEECcCCCCCEEE
Confidence 34567776654 56788887 7889999887432100 0111111 25667 99999999 888666
Q ss_pred EEecCCeEEEeecCcc--------ccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccC
Q 043572 105 LLFCDQCLFLTDSLLT--------QPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGS 175 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l--------~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 175 (997)
++-.||+|.+|++..- ....... ....+..++..+
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------ 126 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF------------------------------------ 126 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT------------------------------------
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC------------------------------------
Confidence 6556889999998532 1111111 111233333221
Q ss_pred ccccCCccchhcccccCCceEEEEEECce---EEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC---EEEEEEC-CcEEE
Q 043572 176 GIKANGVKVKEEEQHCRGDNVFAVIIGKR---LVLIELVNGSFVILKEIQ-CMDGVKTMVWLND---SIIVGTV-NGYSL 247 (997)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~l~Va~kkk---i~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~---~l~vg~~-~~y~l 247 (997)
++ ..++++...+ ..++-|..+.. ...+. ..+.+.++.|..+ .++.|.. ....+
T Consensus 127 ----------------~~-~~l~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 127 ----------------EG-RRLCVVGEGRDNFGVFISWDSGNS--LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp ----------------TS-SEEEEEECCSSCSEEEEETTTCCE--EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred ----------------CC-CEEEEeccCCCCccEEEEEECCCc--ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 11 2355555442 45555654422 22222 2456789999854 4666654 57888
Q ss_pred EEecCCcceeeecCCCCCC-CCceEEcCCC-CeEEE-Ee-CCeEEEEcc-CCCcccccc-----ccCCCCCeEEE-eCcE
Q 043572 248 FSCVTGQSGVIFTLPDVSC-PPMLKLLSKE-QKVLL-LV-DNVGVFVDA-HGQPVGGSL-----VFRKSPDAVGE-LSMY 316 (997)
Q Consensus 248 idl~~g~~~~l~~~~~~~~-~p~i~~~~~~-~e~Ll-~~-~~~g~fv~~-~G~~~r~~i-----~w~~~P~~i~~-~~PY 316 (997)
+|+.+++....+....... ......+..+ +.+|+ +. ++...+.|. .|...+ .+ .-......+.+ ...+
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 266 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLDSQK 266 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE-ECCBTTBCCCSCEEEEEESSSSE
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE-EecccccccCCceEEEEEcCCCE
Confidence 9987776544444221100 1112333333 45554 43 455666664 454432 22 11233345555 4557
Q ss_pred EEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 317 VVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 317 ll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
+++.. ++.|.|+++.++..++++...
T Consensus 267 l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 267 FATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 77666 578999999999999998876
No 67
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.22 Score=62.66 Aligned_cols=298 Identities=12% Similarity=0.118 Sum_probs=148.9
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-cCCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-VADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
++.|+.|+.||.+..+.+....-... ...+ ..+.+.+. -....|..+..-|+...+.++..||+|++|++..
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~------~~~~-~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDN------ASFE-VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTT------BCEE-EEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred CcEEEEecCCCcEEEEECCCccccCC------ceEE-eechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence 56799999999999999875421000 0000 00000000 1345899999999999888877899999999865
Q ss_pred cccccc-----------------cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 120 TQPLKK-----------------LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 120 l~~~~~-----------------~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
.+.... +...++...+... .+++. -..+...+.....|- |.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~g~~~~~~l~~h~---~~ 577 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRD----------------RAPTG---VRQGFMPSTAVHANK---GK 577 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGG----------------GCCTT---CSEEEEEEEEECCCS---CS
T ss_pred ccccCccccCCCcccceeeeeccccCCccccccccc----------------cCCCC---CCCccceeEEEEcCC---Cc
Confidence 321000 0000000000000 00000 000000000000000 00
Q ss_pred cchhcccccCCceEEEEEECce-EEEEEEeCCeEEE---EEeEe--cCCcceEEEEe-----CC-----EEEEEEC-CcE
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKR-LVLIELVNGSFVI---LKEIQ--CMDGVKTMVWL-----ND-----SIIVGTV-NGY 245 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkk-i~i~~~~~~~~~~---~kei~--~~~~~~~l~~~-----~~-----~l~vg~~-~~y 245 (997)
........++ .|+++...+ |.+|......... ++++. -.+.|.+++|. .| .|..|+. ...
T Consensus 578 -V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 578 -TSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp -EEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred -EEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 0000012234 677777654 8898876554322 12221 23458999999 54 4777755 468
Q ss_pred EEEEe---cCCcceeeecCCC--CCCCCc--eEEc----------------------CCCCeEEEEeCCeEEEEcc-CCC
Q 043572 246 SLFSC---VTGQSGVIFTLPD--VSCPPM--LKLL----------------------SKEQKVLLLVDNVGVFVDA-HGQ 295 (997)
Q Consensus 246 ~lidl---~~g~~~~l~~~~~--~~~~p~--i~~~----------------------~~~~e~Ll~~~~~g~fv~~-~G~ 295 (997)
.++|+ .+|+....|.-.. ..-.|+ +.++ ..++.+|+|.+...-.++. .|+
T Consensus 655 ~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k 734 (902)
T 2oaj_A 655 ITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSK 734 (902)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCC
T ss_pred EEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCcccc
Confidence 88888 6665322211000 000111 1111 1233566667665555554 566
Q ss_pred ccccccccCCCC--CeE---E--------EeCcEEEEEE-CCeEEEEecCCCceEEEEecCCCCC----CCceecccccC
Q 043572 296 PVGGSLVFRKSP--DAV---G--------ELSMYVVVLR-GGKMELYHKKSGICVQAVTFGGEGG----GQCIATDEECG 357 (997)
Q Consensus 296 ~~r~~i~w~~~P--~~i---~--------~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~~~~----~~~i~~~~~~~ 357 (997)
+.+.. |...- ..+ . -....|+.++ .+.|+|+++.+++.++++.++...- +.+.+. .
T Consensus 735 ~~~k~--~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~----~ 808 (902)
T 2oaj_A 735 STHKG--FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVL----R 808 (902)
T ss_dssp EEEEE--CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEEC----T
T ss_pred ceeeE--cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccccccccceEEc----C
Confidence 55422 54431 111 1 1123444444 6799999999999999999876431 111121 2
Q ss_pred CCcEEEEEcCCeEEEEeec
Q 043572 358 AGKLLVVATPTKVICYQKV 376 (997)
Q Consensus 358 ~g~~~~v~s~~~V~~l~~~ 376 (997)
.|++++..+++++.++...
T Consensus 809 ~G~~~~~~~~~e~~~~~~~ 827 (902)
T 2oaj_A 809 NGDIAIRVSEFQASLFSTV 827 (902)
T ss_dssp TSCEEEECSSSEEEEEEEE
T ss_pred CCCEEEEeChhheEEEEEE
Confidence 4678888888888776643
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.17 Score=55.37 Aligned_cols=169 Identities=9% Similarity=0.076 Sum_probs=100.9
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|+|++.. ++.|+.|+.||.+..|.+..... ....... ....+|..+...|. .+.++
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------------~~~~~~~---~~~~~v~~~~~~~~~~~~~l~ 119 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW------------SQIAVHA---VHSASVNSVQWAPHEYGPLLL 119 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce------------eEeeeec---CCCcceEEEEeCCCCCCCEEE
Confidence 3578898864 67899999999999999875421 0111111 14568999999998 67666
Q ss_pred EEecCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 105 LLFCDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
++-.|++|.+|++........ ......++.++..+........ . .+
T Consensus 120 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------~---------------~~ 168 (379)
T 3jrp_A 120 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE----------------H---------------NG 168 (379)
T ss_dssp EEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------------------------------------
T ss_pred EecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc----------------c---------------cC
Confidence 656688999999876532211 1223345555554321000000 0 00
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCC--eEEEEEeEec-CCcceEEEEeCC-----EEEEEEC-CcEEEEEec
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNG--SFVILKEIQC-MDGVKTMVWLND-----SIIVGTV-NGYSLFSCV 251 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~--~~~~~kei~~-~~~~~~l~~~~~-----~l~vg~~-~~y~lidl~ 251 (997)
..++ ..++++. ...|.+|....+ .+.....+.. ...+.+++|..+ .|+.|.. ....++|+.
T Consensus 169 --------~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 169 --------TKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ---------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred --------CCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 0012 2344444 456889988754 2344444432 356789999844 4666654 568999998
Q ss_pred CCc
Q 043572 252 TGQ 254 (997)
Q Consensus 252 ~g~ 254 (997)
++.
T Consensus 240 ~~~ 242 (379)
T 3jrp_A 240 NEQ 242 (379)
T ss_dssp STT
T ss_pred CCC
Confidence 775
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.62 E-value=0.043 Score=60.69 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=87.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.+|.+..|....... +....++ -...+|..+...|+.+.++.+-.|
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~------------~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW------------KHARTFS---DHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE------------EECCCBC---CCSSCEEEEEECTTTCCEEEEETT
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCce------------EEEEEEe---cCCceEEEEEEeCCCCEEEEEeCC
Confidence 456776654 66899999999999999875420 0011111 156689999999998867665568
Q ss_pred CeEEEeecCccc---ccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 110 QCLFLTDSLLTQ---PLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 110 ~~l~~~~l~~l~---~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
++|++|++..-. +.... .-...++.++..+.
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------------------------------- 111 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--------------------------------------------- 111 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTT---------------------------------------------
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCC---------------------------------------------
Confidence 999999987643 22211 11223444443221
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCe-EEEEEeEe--cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCC
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGS-FVILKEIQ--CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~-~~~~kei~--~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g 253 (997)
+. .++++. .+.|.+|.+..+. +...+.+. ....+.+++|.. ..|+.|.. ....++|+.++
T Consensus 112 -------~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 112 -------ED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp -------SS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCS
T ss_pred -------CC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEec
Confidence 11 233333 4457777665542 22233343 245789999984 45777755 46889998643
No 70
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.61 E-value=0.48 Score=51.64 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=93.8
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++. .++.|+.|+.+|.+..|.+...... ......+. -....|..+...++.. ++.+-.|
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~----------~~~~~~~~---~h~~~v~~~~~~~~~~-l~s~s~d 163 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN----------VRVSRELA---GHTGYLSCCRFLDDNQ-IVTSSGD 163 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS----------CEEEEEEE---CCSSCEEEEEEEETTE-EEEEETT
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc----------ceeEEEec---CCCccEEEEEECCCCc-EEEEECC
Confidence 34666664 3668999999999999998654321 01111111 1456788888776654 6665678
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++.+|++..-+++..+.. ...|..++..+
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~------------------------------------------------- 194 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAP------------------------------------------------- 194 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECT-------------------------------------------------
T ss_pred CcEEEEECCCCcEEEEEcCCCCceEEEEECC-------------------------------------------------
Confidence 9999999876544332221 12244444322
Q ss_pred cccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeec
Q 043572 189 QHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 189 ~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~ 260 (997)
++. .++.+ ..+.|.+|....+.. .+.+. ....+.+++|. ++.++.|.. ....++|+.++.....+.
T Consensus 195 ---~~~-~l~sg~~d~~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 195 ---DTR-LFVSGACDASAKLWDVREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp ---TSS-EEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ---CCC-EEEEEeCCCcEEEEECCCCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 111 23333 345678877665422 22232 24567899997 445777754 568899998775544444
No 71
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.60 E-value=1 Score=48.25 Aligned_cols=234 Identities=10% Similarity=0.061 Sum_probs=124.5
Q ss_pred CCeEEEE-cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC-CeEEEeecC
Q 043572 41 QVLIYIG-TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD-QCLFLTDSL 118 (997)
Q Consensus 41 ~~~l~iG-T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d-~~l~~~~l~ 118 (997)
++.+|++ ..+|.+..|.+..... .+...... ....+..+.+-|+.+.++++-.+ +.+.+|++.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGA-----------LTLTQVVD----VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSC-----------EEEEEEEE----CSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCc-----------EEEeeeEe----cCCCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 4578888 7799999998864221 01111111 33467888888988867774444 799999986
Q ss_pred c----cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCc
Q 043572 119 L----TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGD 194 (997)
Q Consensus 119 ~----l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 194 (997)
. +..+..+....++..++..+ ++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~s~----------------------------------------------------dg- 95 (343)
T 1ri6_A 69 PDDGALTFAAESALPGSLTHISTDH----------------------------------------------------QG- 95 (343)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECT----------------------------------------------------TS-
T ss_pred CCCCceeeccccccCCCCcEEEEcC----------------------------------------------------CC-
Confidence 1 11111110000111122111 11
Q ss_pred eEEEEEE--CceEEEEEEeCC-eEEEEEeEecCCcceEEEEeC--CEEEEEE--CCcEEEEEecC-Ccceeee----cCC
Q 043572 195 NVFAVII--GKRLVLIELVNG-SFVILKEIQCMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVT-GQSGVIF----TLP 262 (997)
Q Consensus 195 ~~l~Va~--kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~-g~~~~l~----~~~ 262 (997)
..++++. ...|.+|....+ .....+.+.....+.++.|.. +.++++. .....++|+.+ |....+. ...
T Consensus 96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 2355554 456888887533 234445555556688888884 4587775 46788999987 6554322 221
Q ss_pred CCCCCCceEEcCCCCeEE-EEe--CCeEEEEccC---CCcccc-ccc-cC------CCCCeEEEe--CcEEEEEE--CCe
Q 043572 263 DVSCPPMLKLLSKEQKVL-LLV--DNVGVFVDAH---GQPVGG-SLV-FR------KSPDAVGEL--SMYVVVLR--GGK 324 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~L-l~~--~~~g~fv~~~---G~~~r~-~i~-w~------~~P~~i~~~--~PYll~~~--~~~ 324 (997)
.+..|.-..+..++.++ ++. ++....++.+ |..... .+. .+ ..|..+++. ..|+++.. .+.
T Consensus 176 -~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 176 -EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp -TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred -CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 12344444454444544 443 3445555543 332111 110 11 123346665 34777654 478
Q ss_pred EEEEecC--CC--ceEEEEecCC
Q 043572 325 MELYHKK--SG--ICVQAVTFGG 343 (997)
Q Consensus 325 ieI~~~~--~~--~lvQ~i~~~~ 343 (997)
|.|+++. ++ ..++.++...
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~ 277 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTET 277 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSS
T ss_pred EEEEEEcCCCCceEEeeeecCCC
Confidence 9999987 33 4455665433
No 72
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.043 Score=60.20 Aligned_cols=114 Identities=6% Similarity=-0.086 Sum_probs=68.1
Q ss_pred CCcceEEEeec--ccCcEEEEecCCeEEEeecCcccccccc--ccccceEEEEeecccCCccccccccccccccccccCC
Q 043572 88 DSPVESIFVLD--DVGKVLLLFCDQCLFLTDSLLTQPLKKL--GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANAST 163 (997)
Q Consensus 88 ~~~I~qi~vl~--~~~~lLv~l~d~~l~~~~l~~l~~~~~~--~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (997)
..+|..+..-| ..+.++.+-.||++++|++..-.+.... ..-..++.++.++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p------------------------ 180 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK------------------------ 180 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT------------------------
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC------------------------
Confidence 35799999999 7775665566899999998764432111 0011122233221
Q ss_pred cccchhhhhccCccccCCccchhcccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec--CCcceEEEEeC--CEEE
Q 043572 164 STGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC--MDGVKTMVWLN--DSII 238 (997)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~--~~~~~~l~~~~--~~l~ 238 (997)
++ ..++++ ....|.+|....+.... ..+.. ...|.+++|.. ..|+
T Consensus 181 ----------------------------dg-~~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 181 ----------------------------DS-LLLALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp ----------------------------TS-CEEEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEE
T ss_pred ----------------------------CC-CEEEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEE
Confidence 11 234443 34568888876653220 22222 46789999984 4588
Q ss_pred EEECCcEEEEEecCCcc
Q 043572 239 VGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 239 vg~~~~y~lidl~~g~~ 255 (997)
.|......+.|+.++..
T Consensus 231 s~~~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 231 VECDQTVVCFDLRKDVG 247 (343)
T ss_dssp EEESSBEEEEETTSSTT
T ss_pred EEeCCeEEEEEcCCCCc
Confidence 88878999999987654
No 73
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.55 E-value=0.38 Score=52.32 Aligned_cols=143 Identities=14% Similarity=0.025 Sum_probs=88.3
Q ss_pred EEEEEE---CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEECC------------cEEEEEecCCcceeee
Q 043572 196 VFAVII---GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGTVN------------GYSLFSCVTGQSGVIF 259 (997)
Q Consensus 196 ~l~Va~---kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~~~------------~y~lidl~~g~~~~l~ 259 (997)
++.|+. .+.|.++....+ +..+.+.....|..+.+.. +.++++... ....+|..+++....+
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~--~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~ 219 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETD--KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF 219 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTT--EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCCEEEEEECCCC--eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence 355553 455666665543 3445566666777777764 568887653 5888998888776655
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccC-CCcccc-cccc-CCCCCeEEEe--CcEEEEEE------CCeEEEE
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAH-GQPVGG-SLVF-RKSPDAVGEL--SMYVVVLR------GGKMELY 328 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~-G~~~r~-~i~w-~~~P~~i~~~--~PYll~~~------~~~ieI~ 328 (997)
..+. +..|.-..+..++..|.+.+.....+|.. |..... .+.. ...|..+++. .-+|++.. .+.|.++
T Consensus 220 ~~~~-g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 220 KFKL-GDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp ECCT-TCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred ecCC-CCCceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 5532 12465555654446666655544456654 443221 1221 3568888885 35666654 4679999
Q ss_pred ecCCCceEEEEecC
Q 043572 329 HKKSGICVQAVTFG 342 (997)
Q Consensus 329 ~~~~~~lvQ~i~~~ 342 (997)
+.. ++++++++..
T Consensus 299 d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 299 SPQ-GKLIDEFYVG 311 (328)
T ss_dssp CTT-CCEEEEEEEE
T ss_pred CCC-CCEEEEEEec
Confidence 987 9999998763
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.55 E-value=0.15 Score=55.47 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=94.8
Q ss_pred eeeeEEeec-----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEee------ccc
Q 043572 32 LSISPISDC-----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVL------DDV 100 (997)
Q Consensus 32 ~~I~ci~~~-----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl------~~~ 100 (997)
..|+|++.. ++.|+.|+.+|.+..|.+..... ....++ -...+|..+... |+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~---~~~~~v~~~~~~~~~~~s~~~ 129 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-------------PVYSVK---GHKEIINAIDGIGGLGIGEGA 129 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-------------CSEEEC---CCSSCEEEEEEESGGGCC-CC
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-------------cEEEEE---ecccceEEEeeccccccCCCc
Confidence 478888865 36799999999999998875431 011111 155688888654 455
Q ss_pred CcEEEEecCCeEEEeecCccc-ccccccc-----ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhcc
Q 043572 101 GKVLLLFCDQCLFLTDSLLTQ-PLKKLGF-----LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFG 174 (997)
Q Consensus 101 ~~lLv~l~d~~l~~~~l~~l~-~~~~~~~-----~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 174 (997)
+.++.+-.|++|.+|++..-. +...+.. ...+..++..+.. +
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~----------- 177 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY---------------------N----------- 177 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC---------------------C-----------
T ss_pred cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc---------------------C-----------
Confidence 555554557899999987654 3322211 1123333321100 0
Q ss_pred CccccCCccchhcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEe-----CCEEEEEEC-CcEEE
Q 043572 175 SGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWL-----NDSIIVGTV-NGYSL 247 (997)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~-----~~~l~vg~~-~~y~l 247 (997)
.++ ..++++.. ..|.+|....+.. .........+.++.|. ++.+++|.. ....+
T Consensus 178 ----------------~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 178 ----------------QEE-RVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp -----------------CC-CEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred ----------------CCC-CEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 011 23555554 5788888776544 2334456788999997 355777765 46788
Q ss_pred EEecCCcce
Q 043572 248 FSCVTGQSG 256 (997)
Q Consensus 248 idl~~g~~~ 256 (997)
+|+.++...
T Consensus 239 ~d~~~~~~~ 247 (357)
T 3i2n_A 239 FDMRTQHPT 247 (357)
T ss_dssp EEEEEEETT
T ss_pred EeCcCCCcc
Confidence 999876543
No 75
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.55 E-value=0.68 Score=49.66 Aligned_cols=242 Identities=11% Similarity=0.096 Sum_probs=126.5
Q ss_pred eeeEEee--cCCeEEEEcCC-ceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 33 SISPISD--CQVLIYIGTQS-GSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~-G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
.+.+++. .++.||+++.+ |.+..|.+...... ........ ....+..+.+-|+.+.++++-.
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----------LTFAAESA----LPGSLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----------EEEEEEEE----CSSCCSEEEECTTSSEEEEEETT
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc----------eeeccccc----cCCCCcEEEEcCCCCEEEEEecC
Confidence 4555554 46679999887 99999998743210 01111111 1226788888898886766333
Q ss_pred CCeEEEeecC---ccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 109 DQCLFLTDSL---LTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 109 d~~l~~~~l~---~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
++.+.+|++. ...+...+....++..++..+
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~---------------------------------------------- 138 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP---------------------------------------------- 138 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT----------------------------------------------
T ss_pred CCeEEEEECCCCccccccccccCCCCceEEEECC----------------------------------------------
Confidence 6789999873 111111111001111111110
Q ss_pred hcccccCCceEEEEEE--CceEEEEEEeC-CeEEEEE--eEec--CCcceEEEEeC--CEEEEEE--CCcEEEEEec--C
Q 043572 186 EEEQHCRGDNVFAVII--GKRLVLIELVN-GSFVILK--EIQC--MDGVKTMVWLN--DSIIVGT--VNGYSLFSCV--T 252 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~--kkki~i~~~~~-~~~~~~k--ei~~--~~~~~~l~~~~--~~l~vg~--~~~y~lidl~--~ 252 (997)
++ ..++++. ..+|.+|.+.. +...... .+.. ...+..+.|.. ..++++. .....++|++ +
T Consensus 139 ------dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 139 ------DN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp ------TS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred ------CC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 12 2345553 56788888876 5555433 3333 23678888874 4576665 3568899985 3
Q ss_pred Ccceee--e---cCC-CCCCCCceEEcCCCCeEEE-Ee--CCeEEEEccC--C-Cccc-cccccCCCCCeEEEe--CcEE
Q 043572 253 GQSGVI--F---TLP-DVSCPPMLKLLSKEQKVLL-LV--DNVGVFVDAH--G-QPVG-GSLVFRKSPDAVGEL--SMYV 317 (997)
Q Consensus 253 g~~~~l--~---~~~-~~~~~p~i~~~~~~~e~Ll-~~--~~~g~fv~~~--G-~~~r-~~i~w~~~P~~i~~~--~PYl 317 (997)
|....+ + +.+ .....|.-..+..++.+|+ +. ++...+++.. + .... ..+.-...|..+++. ..++
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL 291 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEE
Confidence 443222 1 111 0011232334443444554 43 3445555544 2 2211 123333448888886 4577
Q ss_pred EEEE--CCeEEEEec--CCCce--EEEEec
Q 043572 318 VVLR--GGKMELYHK--KSGIC--VQAVTF 341 (997)
Q Consensus 318 l~~~--~~~ieI~~~--~~~~l--vQ~i~~ 341 (997)
++.. .+.|.|+.+ .++.+ +..++.
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp EEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEecCCCCeEEEEEEcCCCceeeEcccccc
Confidence 7765 478999854 46654 444544
No 76
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.52 E-value=0.092 Score=58.10 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=121.0
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
..|+|++.. ++.++.|+.+|.+..|.+...... ......... ...+|..+...|+.+.++.+-.|+
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~----h~~~V~~v~~spdg~~l~sgs~dg 161 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILEKESL---------LVNKFAKYE----HDDIVKTLSVFSDGTQAVSGGKDF 161 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC-----------------CCCCEEECC----CSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeecccccee---------EEEeeccCC----CCCCEEEEEECCCCCEEEEEeCCC
Confidence 358888864 567999999999999887654321 000111111 456899999999988666656689
Q ss_pred eEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|++|++..-+++..+.. ...+..++..+
T Consensus 162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-------------------------------------------------- 191 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACP-------------------------------------------------- 191 (357)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT--------------------------------------------------
T ss_pred eEEEEECCCCcEEEEEcCCCCCEEEEEEcc--------------------------------------------------
Confidence 999999876544332211 22234333221
Q ss_pred ccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 190 HCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 190 ~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
++...++.+ ..+.|.+|....++........ ....+.+++|.. ..++.|.. ....++|+.+++....+....
T Consensus 192 --~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~ 269 (357)
T 4g56_B 192 --GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS 269 (357)
T ss_dssp --TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS
T ss_pred --CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc
Confidence 011123333 3456777665443222211111 233568898872 34667755 468899998876554444321
Q ss_pred CCCCC-ceEEc-CCCCeEEEE--eCCeEEEEccC-CCccccccccCCCCCeEEEe---CcEEEEEE-CCeEEEEecCC
Q 043572 264 VSCPP-MLKLL-SKEQKVLLL--VDNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL---SMYVVVLR-GGKMELYHKKS 332 (997)
Q Consensus 264 ~~~~p-~i~~~-~~~~e~Ll~--~~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~---~PYll~~~-~~~ieI~~~~~ 332 (997)
.+ ....+ ++++.+|++ .|....+.|.. |+..+ .+.=......+++. ..+++... ++.|.|.++.+
T Consensus 270 ---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 270 ---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred ---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 12 12223 333355553 34556666653 32221 11112233455553 12454443 57788888764
No 77
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.52 E-value=0.25 Score=55.74 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=51.7
Q ss_pred eeeeEEeecC----CeEEEEcCCceEEEEEeCCCCCC---------CCCCCC----CCCCc---c---------cc-ccc
Q 043572 32 LSISPISDCQ----VLIYIGTQSGSLILLSLDPTAAT---------TLHVPN----TTPSQ---Q---------HV-SFL 81 (997)
Q Consensus 32 ~~I~ci~~~~----~~l~iGT~~G~ll~y~~~~~~~~---------~~~~~~----~~~~~---~---------~~-~~~ 81 (997)
..|+|++... +.|+.|+.||.+..|.+...... .+.... ..... . .. .+.
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 4588888653 46999999999999988642210 000000 00000 0 00 011
Q ss_pred cccccCCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 82 KTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 82 ~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
. -...+|..+...|+.+.++.+ .|++|.+|++..
T Consensus 174 ~---~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 207 (447)
T 3dw8_B 174 N---AHTYHINSISINSDYETYLSA-DDLRINLWHLEI 207 (447)
T ss_dssp S---CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE
T ss_pred c---CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC
Confidence 1 156689999999988866664 899999999873
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.29 Score=55.28 Aligned_cols=255 Identities=10% Similarity=0.084 Sum_probs=137.0
Q ss_pred eeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++... +.|+.|+.||.+..|.+........ ......+ . ...+|..|...|+.+.++++-.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-------~~~~~~~-~----h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-------YSSSLTY-D----CSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------CSCSEEE-E----CSSCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------cceeeec-c----CCCCEEEEEEeCCCCEEEEEeC
Confidence 5899988754 5799999999999999865211000 0000111 1 4678999999998887777666
Q ss_pred CCeEEEeecCcc---ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 109 DQCLFLTDSLLT---QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 109 d~~l~~~~l~~l---~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
||+|.+|++..- .... ......+..+..++.......+ +
T Consensus 132 dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~-----~-------------------------------- 173 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVK-FLNCECIRKINLKNFGKNEYAV-----R-------------------------------- 173 (437)
T ss_dssp TSEEEEEEEEEEEETTEEE-EEEEEEEEEEEGGGGSSCCCEE-----E--------------------------------
T ss_pred CCEEEEEEeccccCCceee-ccccceeEEEEccCcccccCce-----E--------------------------------
Confidence 899999998521 1110 0111122222222100000000 0
Q ss_pred hcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEec---CCcceEEEEe--CCEEEEEECC-cEEEEEecCCcceee
Q 043572 186 EEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQC---MDGVKTMVWL--NDSIIVGTVN-GYSLFSCVTGQSGVI 258 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~---~~~~~~l~~~--~~~l~vg~~~-~y~lidl~~g~~~~l 258 (997)
..+........++++.. ..|.+|....++ .++.+.. .+.+.+++|. +..++.|... ...++|+.++.....
T Consensus 174 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 174 MRAFVNEEKSLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 00000011133444444 567888776543 2333333 3678999996 4557777665 588999988766555
Q ss_pred ecCCCCCCCCceEEc------CCCCeEEEEe--CCeEEEEccC-CCcccc---------ccccCC---------------
Q 043572 259 FTLPDVSCPPMLKLL------SKEQKVLLLV--DNVGVFVDAH-GQPVGG---------SLVFRK--------------- 305 (997)
Q Consensus 259 ~~~~~~~~~p~i~~~------~~~~e~Ll~~--~~~g~fv~~~-G~~~r~---------~i~w~~--------------- 305 (997)
+...... + +..+ ..++.+|++. |+...+.|.. |...+. .+.|+.
T Consensus 252 ~~~~~~~--~-v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 252 WSFGDHA--P-ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EBCTTCE--E-EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EecCCCC--c-eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 5433211 2 2221 2334455553 3344445542 332110 122321
Q ss_pred --CCCeEEEeC-cEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 306 --SPDAVGELS-MYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 306 --~P~~i~~~~-PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
....+++.. .+|++.. ++.|.|.++.++..++++.-
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEec
Confidence 133455553 3566554 68999999999998888754
No 79
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.48 E-value=0.3 Score=54.95 Aligned_cols=73 Identities=12% Similarity=0.061 Sum_probs=53.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|.+..... ...+. -...+|..+...|+.+.++.+-.|
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~--------------~~~~~---~h~~~V~~v~~~p~~~~l~s~s~D 213 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--------------IRTMH---GHDHNVSSVSIMPNGDHIVSASRD 213 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE--------------EECCC---CCSSCEEEEEECSSSSEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------------eEEEc---CCCCCEEEEEEeCCCCEEEEEeCC
Confidence 478888864 56799999999999998754321 11111 145689999999998867665668
Q ss_pred CeEEEeecCccc
Q 043572 110 QCLFLTDSLLTQ 121 (997)
Q Consensus 110 ~~l~~~~l~~l~ 121 (997)
+++.+|++..-.
T Consensus 214 ~~i~~wd~~~~~ 225 (410)
T 1vyh_C 214 KTIKMWEVQTGY 225 (410)
T ss_dssp SEEEEEETTTCC
T ss_pred CeEEEEECCCCc
Confidence 999999986643
No 80
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.47 E-value=0.49 Score=50.57 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=99.4
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|+|++.. ++.|+.|+.||.+..|.+......... .......... -...+|..+...|. .+.++
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG-----RRWNKLCTLN---DSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-----CSEEEEEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-----cCcceeeeec---ccCCceeEEEEcCCCCCcEEE
Confidence 3578999874 678999999999999999765421000 0001111111 25678999999998 67666
Q ss_pred EEecCCeEEEeecCccccccccccc--------------cceEEEEeecccCCccccccccccccccccccCCcccchhh
Q 043572 105 LLFCDQCLFLTDSLLTQPLKKLGFL--------------KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLL 170 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~~~~~--------------kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 170 (997)
++-.|+.|++|++....++...... ..+..++..+.
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------------------------ 178 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS------------------------------ 178 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC------------------------------
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC------------------------------
Confidence 6566899999999875543322111 11111111110
Q ss_pred hhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCC-eEEEEEeEe-cCCcceEEEEeCC------EEEEEEC
Q 043572 171 QKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG-SFVILKEIQ-CMDGVKTMVWLND------SIIVGTV 242 (997)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~-~~~~~kei~-~~~~~~~l~~~~~------~l~vg~~ 242 (997)
. .....++++......+|..... .......+. ....+.++.|..+ .|+.|..
T Consensus 179 -------------------~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 179 -------------------R-FSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp -------------------S-SSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred -------------------C-CCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 0 0123577777777666655443 444444443 2456899999865 3666654
Q ss_pred -CcEEEEEecCCc
Q 043572 243 -NGYSLFSCVTGQ 254 (997)
Q Consensus 243 -~~y~lidl~~g~ 254 (997)
....++|+.++.
T Consensus 239 dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 239 DGRIRIFKITEKL 251 (351)
T ss_dssp TSCEEEEEEEECC
T ss_pred CCeEEEEeCCCCc
Confidence 568999998664
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.45 E-value=0.62 Score=51.40 Aligned_cols=240 Identities=11% Similarity=-0.001 Sum_probs=128.5
Q ss_pred ceeeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC---cE
Q 043572 30 RSLSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG---KV 103 (997)
Q Consensus 30 ~~~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~---~l 103 (997)
....|+|++... +.|+.|+.+|.+..|.+..... ..... ...++..+...+... .+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--------------ADVFN----FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--------------EEEEE----CSSCEEEEEECSSCSSCCEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--------------ceecc----CCCceeeeEeecCCCCCcEE
Confidence 456788988643 4699999999999998875331 11111 345788888887543 56
Q ss_pred EEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+++-.|+.|++|++..-.+...+. ....++.++..+.
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------------ 197 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR------------------------------------------ 197 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS------------------------------------------
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC------------------------------------------
Confidence 665668899999997755443332 1223455554321
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCe--EEEEEe-------------EecCCcceEEEEeC--CEEEEEEC-C
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGS--FVILKE-------------IQCMDGVKTMVWLN--DSIIVGTV-N 243 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~--~~~~ke-------------i~~~~~~~~l~~~~--~~l~vg~~-~ 243 (997)
+...++++. ...|.+|....+. +..+.. ......+.+++|.. ..|+.|.. .
T Consensus 198 ----------~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 198 ----------YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp ----------CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ----------CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 112233333 3457777764331 111100 11234678899974 45777754 5
Q ss_pred cEEEEEecCCcceeeecCCC--CC-CCCc-eEEcCCCCeEEEE-eCCeEEEEcc-CCCccccccccC-CCCCeEEEe--C
Q 043572 244 GYSLFSCVTGQSGVIFTLPD--VS-CPPM-LKLLSKEQKVLLL-VDNVGVFVDA-HGQPVGGSLVFR-KSPDAVGEL--S 314 (997)
Q Consensus 244 ~y~lidl~~g~~~~l~~~~~--~~-~~p~-i~~~~~~~e~Ll~-~~~~g~fv~~-~G~~~r~~i~w~-~~P~~i~~~--~ 314 (997)
...++|+.++.....+.... .. .... .......+.++.+ .++...+.|. .|.+.. .+.-. .....+++. .
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT-MLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE-EECCCSSCEEEEEEETTT
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee-eeccCCCeEEEEEEcCCC
Confidence 78999998876543332211 11 1111 1122223345444 5566666664 344332 22211 223344554 4
Q ss_pred cEEEEEE-CCeEEEEecCCCceEEEEe
Q 043572 315 MYVVVLR-GGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 315 PYll~~~-~~~ieI~~~~~~~lvQ~i~ 340 (997)
.+|++.. ++.|.|.++.+++.+..+.
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp TEEEEEETTSCEEEEEECC--------
T ss_pred CEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 5777665 6789999999987766553
No 82
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.42 E-value=1.1 Score=52.33 Aligned_cols=233 Identities=15% Similarity=0.069 Sum_probs=125.0
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|++++.. ++.|+.|+.+|.+..|...... ...+. -...+|..+.+.|+...++.+-.
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~---------------~~~~~---~h~~~v~~~~~~~~~~~l~t~~~ 323 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---------------LQTLT---GHSSSVWGVAFSPDGQTIASASD 323 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE---------------EEEEe---cCCCCeEEEEECCCCCEEEEEeC
Confidence 3567787754 5579999999999888743211 11111 14568999999998886666455
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+++.+|++..-....-......+..++..+
T Consensus 324 d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------------------- 354 (577)
T 2ymu_A 324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP------------------------------------------------- 354 (577)
T ss_dssp TSCEEEEETTSCEEEEECCCSSCEEEEEECT-------------------------------------------------
T ss_pred CCeEEEEeCCCCeeEEEeCCCCCEEEEEECC-------------------------------------------------
Confidence 7899999975421110001112233333221
Q ss_pred cccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECC-cEEEEEecCCcceeeecCCCC
Q 043572 189 QHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVN-GYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 189 ~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~-~y~lidl~~g~~~~l~~~~~~ 264 (997)
++ ..++++.. ..+.+|.........+.. ....+.+++|.. ..|+.|... ...++|. +++....+.-.
T Consensus 355 ---~g-~~l~~~~~dg~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~-- 425 (577)
T 2ymu_A 355 ---DG-QTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-- 425 (577)
T ss_dssp ---TS-SEEEEEETTSEEEEEETTCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC--
T ss_pred ---CC-CEEEEEeCCCEEEEEcCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC--
Confidence 11 23444444 346777654332222221 245678898874 457777654 5667775 34432222211
Q ss_pred CCCCceEEcCCCCeEEE-Ee-CCeEEEEccCCCcccccccc-CCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEE
Q 043572 265 SCPPMLKLLSKEQKVLL-LV-DNVGVFVDAHGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQA 338 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~ 338 (997)
........+..++.+|+ +. |....+.+.+|...+ ++.- ......+++. ..+|++.. ++.|.|.+ .++.++++
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~-~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~ 503 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 503 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEE-EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEE
Confidence 11111123333334444 43 456666777766443 1211 1222344443 34666554 56899999 46788887
Q ss_pred Eec
Q 043572 339 VTF 341 (997)
Q Consensus 339 i~~ 341 (997)
+.-
T Consensus 504 ~~~ 506 (577)
T 2ymu_A 504 LTG 506 (577)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.41 E-value=0.066 Score=59.18 Aligned_cols=158 Identities=8% Similarity=-0.021 Sum_probs=90.9
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.||.+..|.+...... .....+. -...+|..+...|+.+.++++-.
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~----------~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~ 120 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW----------KQTLVLL----RLNRAATFVRWSPNEDKFAVGSG 120 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CC----------CCEEECC----CCSSCEEEEECCTTSSCCEEEES
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce----------eeeeEec----ccCCceEEEEECCCCCEEEEEec
Confidence 4578888865 567999999999999988754310 0011111 14668999999998887777666
Q ss_pred CCeEEEeecCcccc---ccccc--cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 109 DQCLFLTDSLLTQP---LKKLG--FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 109 d~~l~~~~l~~l~~---~~~~~--~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
|++|++|++..-.+ ...+. ....++.++..+
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------------------------------------- 156 (377)
T 3dwl_C 121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-------------------------------------------- 156 (377)
T ss_dssp SSCEEECCC-----CCCCEEECSSCCSCEEEEEECT--------------------------------------------
T ss_pred CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC--------------------------------------------
Confidence 89999999876442 11111 122344444332
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCe----------------EEEEEeEecCCcceEEEEeC--CEEEEEEC-C
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGS----------------FVILKEIQCMDGVKTMVWLN--DSIIVGTV-N 243 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~----------------~~~~kei~~~~~~~~l~~~~--~~l~vg~~-~ 243 (997)
++ ..++++. ...|.+|...... -....++.....+.+++|.. ..|+.|.. .
T Consensus 157 --------~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 227 (377)
T 3dwl_C 157 --------NN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS 227 (377)
T ss_dssp --------TS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT
T ss_pred --------CC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC
Confidence 11 1344444 4568888874211 22334443445689999974 45777755 4
Q ss_pred cEEEEEecCCcc
Q 043572 244 GYSLFSCVTGQS 255 (997)
Q Consensus 244 ~y~lidl~~g~~ 255 (997)
...++|+.++..
T Consensus 228 ~i~iwd~~~~~~ 239 (377)
T 3dwl_C 228 SVTIAYPSAPEQ 239 (377)
T ss_dssp EEC-CEECSTTS
T ss_pred cEEEEECCCCCC
Confidence 788999988765
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.38 E-value=0.79 Score=49.60 Aligned_cols=161 Identities=11% Similarity=0.067 Sum_probs=97.2
Q ss_pred eeeeeEEeec------CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc----
Q 043572 31 SLSISPISDC------QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV---- 100 (997)
Q Consensus 31 ~~~I~ci~~~------~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~---- 100 (997)
...|+|++.. +..++.|+.+|.+..|....... ......... .....+|..+...|+.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------IRLLQSYVD-ADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------EEEEEEEEC-SCTTCCEEEEEEEECTTTCC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------EEeeeeccc-cCCCCcEEEEEeccCCCCCC
Confidence 4688999976 44699999999999999874331 000100000 0134679999999884
Q ss_pred CcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc
Q 043572 101 GKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA 179 (997)
Q Consensus 101 ~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 179 (997)
..++++-.||+|.+|++...+++..+. ....++.++..+.
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------------------------------- 126 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--------------------------------------- 126 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS---------------------------------------
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC---------------------------------------
Confidence 445555568899999988765543332 2233444443220
Q ss_pred CCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEE-EEe-EecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCC
Q 043572 180 NGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVI-LKE-IQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 180 ~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~-~ke-i~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g 253 (997)
++ ..++++. ...|.+|.+..+.... ++. -.....+.++.|. ++.++.|.. ....++|+.++
T Consensus 127 ------------~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 127 ------------DP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp ------------CT-TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred ------------CC-CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence 11 2344444 4568888877653322 111 1235578999998 445777754 57899999876
Q ss_pred cc
Q 043572 254 QS 255 (997)
Q Consensus 254 ~~ 255 (997)
..
T Consensus 194 ~~ 195 (366)
T 3k26_A 194 RM 195 (366)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.34 E-value=1.2 Score=48.96 Aligned_cols=159 Identities=13% Similarity=0.000 Sum_probs=97.4
Q ss_pred ceeeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 30 RSLSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
....|+|++... +.|+.|+.+|.+..|.+..... ....... -...+|..+...|+.+.++++
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~---~~~~~v~~~~~~~~~~~l~~~ 181 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI------------QVFAKTD---SWDYWYCCVDVSVSRQMLATG 181 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE------------EEEECCC---CSSCCEEEEEEETTTTEEEEE
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce------------EEEeccC---CCCCCeEEEEECCCCCEEEEE
Confidence 346889998754 5799999999999998874211 0010000 123579999999998877776
Q ss_pred ecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 107 FCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
-.|+.|.+|++. -.++..+. ....+..++..+
T Consensus 182 ~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~---------------------------------------------- 214 (383)
T 3ei3_B 182 DSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP---------------------------------------------- 214 (383)
T ss_dssp ETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS----------------------------------------------
T ss_pred CCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC----------------------------------------------
Confidence 668899999983 22222211 112344444322
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCe--EEEEEeEecCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcce
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGS--FVILKEIQCMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSG 256 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~--~~~~kei~~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~ 256 (997)
++...++.+. ...|.+|.+.... -...+.+.....+.+++|.. ..|+.|.. ....++|+.++...
T Consensus 215 ------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 215 ------RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp ------SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred ------CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 1221344444 4568888887521 11222334567889999975 45776754 57899999887653
No 86
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.32 E-value=0.18 Score=54.49 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=91.4
Q ss_pred eeeeEEeec--CC-eEEEEcCCceEEEEEe-CCCCCCCCCCCCCCCCcccccccccccc--CCCcceEEEeecccCcEEE
Q 043572 32 LSISPISDC--QV-LIYIGTQSGSLILLSL-DPTAATTLHVPNTTPSQQHVSFLKTVSV--ADSPVESIFVLDDVGKVLL 105 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iGT~~G~ll~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~I~qi~vl~~~~~lLv 105 (997)
..|+|++.. ++ .|+.|+.+|.+..|.+ ..... ..+. - ...+|..|...| .+.++.
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--------------~~~~----~~~~~~~v~~l~~~~-~~~l~s 117 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--------------QALT----NNEANLGICRICKYG-DDKLIA 117 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--------------EECB----SCCCCSCEEEEEEET-TTEEEE
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--------------Eecc----ccCCCCceEEEEeCC-CCEEEE
Confidence 477887754 66 7999999999999987 54321 1110 1 456899999999 665666
Q ss_pred EecCCeEEEeecCc---------cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 106 LFCDQCLFLTDSLL---------TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 106 ~l~d~~l~~~~l~~---------l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
+-.|+.|++|++.. ..++..+.....+..++..+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------- 160 (342)
T 1yfq_A 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS------------------------------------- 160 (342)
T ss_dssp EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-------------------------------------
T ss_pred EcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-------------------------------------
Confidence 55688999999876 33333322222233333211
Q ss_pred cccCCccchhcccccCCceEEEEEEC-ceEEEEEEeC-Ce-EEEEEeEecCCcceEEEEeC---CEEEEEECC-cEEEEE
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVN-GS-FVILKEIQCMDGVKTMVWLN---DSIIVGTVN-GYSLFS 249 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~-~~-~~~~kei~~~~~~~~l~~~~---~~l~vg~~~-~y~lid 249 (997)
+ . ++++.. ..|.+|.... .. ............+.++.|.. +.+++|... ...+.|
T Consensus 161 ---------------~--~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 161 ---------------S--R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp ---------------S--E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred ---------------C--c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 1 1 445544 4788888876 32 12223333456789999974 457777665 566778
Q ss_pred ecCC
Q 043572 250 CVTG 253 (997)
Q Consensus 250 l~~g 253 (997)
++.+
T Consensus 223 ~~~~ 226 (342)
T 1yfq_A 223 FDDQ 226 (342)
T ss_dssp CCTT
T ss_pred EcCC
Confidence 7665
No 87
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.21 E-value=0.66 Score=49.58 Aligned_cols=71 Identities=15% Similarity=0.024 Sum_probs=51.7
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|+.. .++.|+.|+.||.+..|....... ...+ + -...+|..|..-|+...++.+-.|
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-------------~~~~-~---~h~~~v~~~~~~~~~~~l~sgs~D 118 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-------------VVDF-E---AHPDYIRSIAVHPTKPYVLSGSDD 118 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-------------EEEE-E---CCSSCEEEEEECSSSSEEEEEETT
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE-------------EEEE-e---CCCCcEEEEEEcCCCCEEEEECCC
Confidence 45666554 467899999999999998765331 1111 1 156789999999998866666668
Q ss_pred CeEEEeecCc
Q 043572 110 QCLFLTDSLL 119 (997)
Q Consensus 110 ~~l~~~~l~~ 119 (997)
++|++|++..
T Consensus 119 ~~v~lWd~~~ 128 (304)
T 2ynn_A 119 LTVKLWNWEN 128 (304)
T ss_dssp SCEEEEEGGG
T ss_pred CeEEEEECCC
Confidence 9999999864
No 88
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.19 E-value=1.2 Score=48.74 Aligned_cols=164 Identities=12% Similarity=0.104 Sum_probs=96.7
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.|.|++. .++.|+.|+.+|.+..|.+....... .......+. ....+|..+...|+...++.+-.|+
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~--------~~~~~~~~~---~h~~~v~~~~~~~~~~~l~t~s~D~ 176 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN--------MAAKKKSVA---MHTNYLSACSFTNSDMQILTASGDG 176 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC--------SGGGCEEEE---ECSSCEEEEEECSSSSEEEEEETTS
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc--------ccccceeee---ccCCcEEEEEEeCCCCEEEEEeCCC
Confidence 4555553 36789999999999999886543210 000111111 2566899999999888777766789
Q ss_pred eEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
++.+|++..-+++..+. -...+..++..+..
T Consensus 177 ~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~------------------------------------------------ 208 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSE------------------------------------------------ 208 (354)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECCCS------------------------------------------------
T ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC------------------------------------------------
Confidence 99999987655433221 11223333322100
Q ss_pred ccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeec
Q 043572 190 HCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 190 ~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~ 260 (997)
++ ..++.+ ..+.|.+|....+.. .+.+. ....+.+++|. ++.++.|.. ....++|+.++.....+.
T Consensus 209 --~g-~~l~sgs~Dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 209 --TG-NTFVSGGCDKKAMVWDMRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp --SC-CEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred --CC-CEEEEEeCCCeEEEEECCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 11 123333 445678887765532 22332 24567899997 456777754 568899988765544444
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.17 E-value=1.2 Score=48.28 Aligned_cols=133 Identities=6% Similarity=-0.035 Sum_probs=72.2
Q ss_pred EECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcce-eeecCCCCCCCCceEEcCC
Q 043572 200 IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSG-VIFTLPDVSCPPMLKLLSK 275 (997)
Q Consensus 200 a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~-~l~~~~~~~~~p~i~~~~~ 275 (997)
.....|.+|.+..+.............+.+++|.. ..++.|. .....++|+.++... ..+..+ ....-....+.+
T Consensus 146 s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~fs~ 224 (343)
T 3lrv_A 146 DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVD-EEAKIKEVKFAD 224 (343)
T ss_dssp ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCC-TTSCEEEEEECT
T ss_pred eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEecc-CCCCEEEEEEeC
Confidence 34557889888766543333333344688999984 3466664 457899999988655 334431 111112233333
Q ss_pred CCeEE-EEeCCeEEEEccC-CCcccc--ccccCCCCC---eEEEe--CcEEEEEE--CCeEEEEecCCC
Q 043572 276 EQKVL-LLVDNVGVFVDAH-GQPVGG--SLVFRKSPD---AVGEL--SMYVVVLR--GGKMELYHKKSG 333 (997)
Q Consensus 276 ~~e~L-l~~~~~g~fv~~~-G~~~r~--~i~w~~~P~---~i~~~--~PYll~~~--~~~ieI~~~~~~ 333 (997)
++.+| .+.++...+.|.. +...+. ++.-...+. .+++. ..|+++.. ++.+.|+++.++
T Consensus 225 ~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 225 NGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp TSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 44554 4466666666653 333221 111111232 25554 45888754 788999998654
No 90
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.12 E-value=1.7 Score=50.67 Aligned_cols=230 Identities=13% Similarity=0.047 Sum_probs=126.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.+++.. ++.|+.|+.+|.+..+...... ...+ . -...+|..+...|+...+++.-.|
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------------~~~~-~---~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------------LQTL-T---GHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------------EEEE-C---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------------eEEE-e---CCCCCEEEEEECCCCCEEEEEeCC
Confidence 467777754 5679999999999988764321 0111 1 145689999999988866665568
Q ss_pred CeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++.+|+... +.+..+. ....++.++..+
T Consensus 366 g~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~------------------------------------------------- 395 (577)
T 2ymu_A 366 KTVKLWNRNG-QLLQTLTGHSSSVRGVAFSP------------------------------------------------- 395 (577)
T ss_dssp SEEEEEETTC-CEEEEEECCSSCEEEEEECT-------------------------------------------------
T ss_pred CEEEEEcCCC-CEEEEecCCCCCeEEEEECC-------------------------------------------------
Confidence 8999998532 1111111 112233333221
Q ss_pred cccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCC
Q 043572 189 QHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 189 ~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~ 264 (997)
++ ..++++.. +.|.+|.........+.. ....+.++.|.. ..|+.|.. ....+.|+.......+....
T Consensus 396 ---dg-~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~-- 467 (577)
T 2ymu_A 396 ---DG-QTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS-- 467 (577)
T ss_dssp ---TS-SCEEEEETTSEEEEECTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCS--
T ss_pred ---CC-CEEEEEeCCCEEEEEeCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCC--
Confidence 11 12444444 457777644332222221 245678888874 35766655 45777886432222222221
Q ss_pred CCCCceEEcCCCCeEEEE-e-CCeEEEEccCCCcccccccc-CCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEE
Q 043572 265 SCPPMLKLLSKEQKVLLL-V-DNVGVFVDAHGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQA 338 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~-~-~~~g~fv~~~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~ 338 (997)
.......+..++.+|++ . |....+.|.+|+..+ ++.- ......+++. ..||++.. ++.|.|.+. +++.+++
T Consensus 468 -~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 468 -SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp -SCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEE-EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred -CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEE-EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 11222334444466654 3 445666677776543 2211 1223344443 34777665 568999995 6788888
Q ss_pred Ee
Q 043572 339 VT 340 (997)
Q Consensus 339 i~ 340 (997)
+.
T Consensus 545 ~~ 546 (577)
T 2ymu_A 545 LT 546 (577)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 91
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.09 E-value=1.2 Score=47.92 Aligned_cols=143 Identities=6% Similarity=-0.035 Sum_probs=81.5
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCC----------cceEEEEe--CCEEEEEE---CCcEEEEEecCCcceeee
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMD----------GVKTMVWL--NDSIIVGT---VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~----------~~~~l~~~--~~~l~vg~---~~~y~lidl~~g~~~~l~ 259 (997)
++|+.. ..|.+|....++. .+.+..++ .+..+.|. ++.++++. .....++|+.+++....+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 455544 4566665544432 33343422 26778886 45688876 346899999888877777
Q ss_pred cCCCCCCCCceEEcC-CCCeEEEEe-CCeEEEEccC-CCcccccccc-----CCCCCeEEEe--CcEEEEEE--CCeEEE
Q 043572 260 TLPDVSCPPMLKLLS-KEQKVLLLV-DNVGVFVDAH-GQPVGGSLVF-----RKSPDAVGEL--SMYVVVLR--GGKMEL 327 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~-~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w-----~~~P~~i~~~--~PYll~~~--~~~ieI 327 (997)
+.... .|.-..+. +++.+.++. ++....+|.. |...+ .+.. ...|..+++. ..++++.. .+.|.+
T Consensus 181 ~~~~~--~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 181 QNTGK--MSTGLALDSEGKRLYTTNADGELITIDTADNKILS-RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp CCCCT--TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE-EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred cCCCC--ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE-EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 63221 23323333 333344442 3445556653 33322 2222 2234456665 45676654 378999
Q ss_pred EecCCCceEEEEecCCC
Q 043572 328 YHKKSGICVQAVTFGGE 344 (997)
Q Consensus 328 ~~~~~~~lvQ~i~~~~~ 344 (997)
+++.++..++.++....
T Consensus 258 ~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 258 VDTRNGNILAKVAAPES 274 (353)
T ss_dssp EETTTCCEEEEEECSSC
T ss_pred EECCCCcEEEEEEcCCC
Confidence 99999999999987653
No 92
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.04 E-value=0.73 Score=51.32 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=90.1
Q ss_pred eeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.|+|++.. ++.|+.|+.||.+..|.+.... ....++ -...+|..+...|+.+.++.+-.|+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~d~ 187 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--------------IVMILQ---GHEQDIYSLDYFPSGDKLVSGSGDR 187 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEEC---CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------------EEEEEc---cCCCCEEEEEEcCCCCEEEEecCCC
Confidence 37888764 6689999999999999876432 111111 1566899999999988777656689
Q ss_pred eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 111 CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
++++|++..-+....+....++..++..+.
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------------------------- 217 (393)
T 1erj_A 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPG-------------------------------------------------- 217 (393)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECST--------------------------------------------------
T ss_pred cEEEEECCCCeeEEEEEcCCCcEEEEEECC--------------------------------------------------
Confidence 999999876443222222233444443220
Q ss_pred cCCceEEEEEE-CceEEEEEEeCCeEEE-EEe-----EecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCc
Q 043572 191 CRGDNVFAVII-GKRLVLIELVNGSFVI-LKE-----IQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 191 ~~~~~~l~Va~-kkki~i~~~~~~~~~~-~ke-----i~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~ 254 (997)
++ ..++++. ...|.+|....+.... +.. ....+.+.+++|.. ..|+.|.. ....+.|+.++.
T Consensus 218 -~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 218 -DG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp -TC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred -CC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 11 2244443 4557787765543221 110 11234678899874 45777754 568888987543
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.01 E-value=1.8 Score=48.50 Aligned_cols=235 Identities=9% Similarity=0.031 Sum_probs=121.7
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.-+++++.. ++.|.+|. +|.++.+....... .+..... -....|..+...|+.+.++++-.||
T Consensus 106 ~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~-----------~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 106 YYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDI-----------LQLLQME----QPGEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp TTCBCEEECTTSEEEEEE-TTEEEEEETTTCCE-----------EEEEECC----STTCCEEEEEECTTSSEEEEEETTS
T ss_pred ccceeEEECCCCEEEEEe-CCEEEEEECCCCCE-----------EEEEEec----CCCCcEEEEEECCCCCEEEEEECCC
Confidence 345667753 45577886 88999998764321 1111111 1345799999999999777777799
Q ss_pred eEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|.+|++..-+++..... ...+..++.+
T Consensus 170 ~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--------------------------------------------------- 198 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTSHSARVGSLSWN--------------------------------------------------- 198 (420)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE---------------------------------------------------
T ss_pred eEEEEEcCCCcEEEEEeCCCCceEEEeeC---------------------------------------------------
Confidence 999999876544322111 1112222221
Q ss_pred ccCCceEEEEEECc-eEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEE-CCcEEEEEecCCccee--eecCC
Q 043572 190 HCRGDNVFAVIIGK-RLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGT-VNGYSLFSCVTGQSGV--IFTLP 262 (997)
Q Consensus 190 ~~~~~~~l~Va~kk-ki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~-~~~y~lidl~~g~~~~--l~~~~ 262 (997)
+ ..++.+... .+.++...... .....+. ....+..+.|. +..++.|. .+...+.|..++.... +....
T Consensus 199 ---~-~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~ 273 (420)
T 4gga_A 199 ---S-YILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273 (420)
T ss_dssp ---T-TEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC
T ss_pred ---C-CEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec
Confidence 1 123333332 34444433221 1122222 23455666666 34566654 4567888887765321 11111
Q ss_pred CCCCCC--ceEEcCCCCeEEE-Ee---CCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE---CCeEEEEec
Q 043572 263 DVSCPP--MLKLLSKEQKVLL-LV---DNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR---GGKMELYHK 330 (997)
Q Consensus 263 ~~~~~p--~i~~~~~~~e~Ll-~~---~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~---~~~ieI~~~ 330 (997)
.. ..+ .+...+.+..++. +. |....+.|.. |.... .+.-...+..+.+. ..++++.+ ++.|.|+++
T Consensus 274 ~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~-~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 274 QH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp CC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred cc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce-eeccccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 11 111 1222233333433 32 4455566653 33321 23323333444443 34666543 578999999
Q ss_pred CCCceEEEEe
Q 043572 331 KSGICVQAVT 340 (997)
Q Consensus 331 ~~~~lvQ~i~ 340 (997)
.++..++++.
T Consensus 352 ~~~~~v~~l~ 361 (420)
T 4gga_A 352 PTMAKVAELK 361 (420)
T ss_dssp TTCCEEEEEC
T ss_pred CCCcEEEEEc
Confidence 9999999885
No 94
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.93 E-value=1.4 Score=47.54 Aligned_cols=156 Identities=8% Similarity=0.034 Sum_probs=94.0
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++.. +..++-|+.||.+..|.+..... ...+. .....|..+..-|+.+.++++-.|
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~--------------~~~~~---~~~~~~~~~~~spdg~~l~~g~~d 143 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ--------------IKSID---AGPVDAWTLAFSPDSQYLATGTHV 143 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------------EEEEE---CCTTCCCCEEECTTSSEEEEECTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE--------------EEEEe---CCCccEEEEEECCCCCEEEEEcCC
Confidence 467777754 45788999999999998764321 11111 145578888888988877775668
Q ss_pred CeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+.+.+|++..-.+...+. ....+..++..+
T Consensus 144 g~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp------------------------------------------------- 174 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSP------------------------------------------------- 174 (321)
T ss_dssp SEEEEEETTTCSEEEEEECSSSCEEEEEECT-------------------------------------------------
T ss_pred CcEEEEEcCCCceeEEecCCCceEEEEEECC-------------------------------------------------
Confidence 899999987644322111 111233333221
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeee
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~ 259 (997)
++ ..++++. ...|.+|....++. ++.+.- ...+.+++|.. ..|+.|.. ....+.|+.++.....+
T Consensus 175 ---dg-~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 175 ---DG-KYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp ---TS-SEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ---CC-CEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 12 1244443 45577887765532 233332 34678999984 45666654 46888999877654443
No 95
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.91 E-value=2.3 Score=47.19 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=129.3
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-cCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-VADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++.. |+.|..|+ ++.+..|.+.....-...............+..... -+...|..+..-|+...++.+-.
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 467888754 56777776 567888877543210000000000000000000000 02235889998898886666566
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|++|++|++..-+.+..+. -...|..++..+
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p------------------------------------------------ 175 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFP------------------------------------------------ 175 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECT------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcC------------------------------------------------
Confidence 8999999987644332211 112233333321
Q ss_pred ccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++. .++.+ ..+.|.+|.+..+.. ...+...+.+.++.|.. ..++.|.. ....++|+.++.....+...
T Consensus 176 ----~~~-~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~ 248 (393)
T 1erj_A 176 ----SGD-KLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248 (393)
T ss_dssp ----TSS-EEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred ----CCC-EEEEecCCCcEEEEECCCCee--EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc
Confidence 111 23333 345678887765533 23344567788888873 45777754 56889999888655444321
Q ss_pred C---CCCCCce--EEcCCCCeEEEE-e-CCeEEEEccCC-Ccc-------cc--ccccCCC---CCeEEEe--CcEEEEE
Q 043572 263 D---VSCPPML--KLLSKEQKVLLL-V-DNVGVFVDAHG-QPV-------GG--SLVFRKS---PDAVGEL--SMYVVVL 320 (997)
Q Consensus 263 ~---~~~~p~i--~~~~~~~e~Ll~-~-~~~g~fv~~~G-~~~-------r~--~i~w~~~---P~~i~~~--~PYll~~ 320 (997)
. .+....+ ..+..++.+|++ . |+...+.|... ... .+ ...+... ...+++. ..||+..
T Consensus 249 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 328 (393)
T 1erj_A 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328 (393)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEE
Confidence 1 1111122 233334455554 3 45555555432 110 01 1223222 2233332 3577766
Q ss_pred E-CCeEEEEecCCCceEEEEec
Q 043572 321 R-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 321 ~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
. ++.|.|.++.++..++++.-
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC
T ss_pred eCCCeEEEEECCCCeEEEEECC
Confidence 5 57899999999998888753
No 96
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.88 E-value=0.68 Score=49.87 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=95.2
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC------cE
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG------KV 103 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~------~l 103 (997)
..|.|++.. ++.|+.|+.||.+..|.+.... ...+.. ....|..+...|... .+
T Consensus 108 ~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~--------------~~~~~~----h~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 108 SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--------------LATLLG----HNDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTSCE--------------EEEECC----CSSCEEEEEECCC------CCEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------------EEEEec----cCCcEEEEEEccCCCCCCCccEE
Confidence 467887754 5579999999999999875321 111111 456788888887533 35
Q ss_pred EEEecCCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+.+-.|+++.+|++......... .-...+..++..+
T Consensus 170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp------------------------------------------- 206 (319)
T 3frx_A 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP------------------------------------------- 206 (319)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-------------------------------------------
T ss_pred EEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-------------------------------------------
Confidence 55456889999999775543221 1122344444322
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--EEEEEECCcEEEEEecCCcce
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND--SIIVGTVNGYSLFSCVTGQSG 256 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~l~vg~~~~y~lidl~~g~~~ 256 (997)
++ ..++.+. ...|.+|....+ +.++.+...+.+.+++|..+ .+..|...+..+++++++...
T Consensus 207 ---------~g-~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~ 271 (319)
T 3frx_A 207 ---------DG-TLIASAGKDGEIMLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271 (319)
T ss_dssp ---------TS-SEEEEEETTCEEEEEETTTT--EEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEE
T ss_pred ---------CC-CEEEEEeCCCeEEEEECCCC--cEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeee
Confidence 11 2344444 456888877654 33445556778899999853 477888889999998765443
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.36 Score=55.00 Aligned_cols=74 Identities=12% Similarity=-0.045 Sum_probs=50.9
Q ss_pred eeeeEEeecC-----CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 32 LSISPISDCQ-----VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~~-----~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
..|+|++... +.|+.|+.+|.+..|.+..... ...+.. -...+|..+... +.+.++.+
T Consensus 196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-------------~~~~~~---~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 196 SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-------------VDKWLF---GHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC-------------EEEECC---CCSSCEEEEEEC-STTEEEEE
T ss_pred CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce-------------eeeeec---CCCCceEEEEEC-CCCEEEEE
Confidence 5788887653 3799999999999999864321 011111 145689999888 66655554
Q ss_pred ecCCeEEEeecCcccc
Q 043572 107 FCDQCLFLTDSLLTQP 122 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~ 122 (997)
-.|++|++|++...++
T Consensus 259 ~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKN 274 (450)
T ss_dssp ESSSEEEEEETTTCCE
T ss_pred eCCCeEEEEECCCCcE
Confidence 4578999999876543
No 98
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.87 E-value=0.62 Score=50.23 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=37.1
Q ss_pred ceEEEEEEeCCe-EEEEEeEecCCcceEEEEeC-CEEEEEECCcEEEEEecCCcceeeecCC
Q 043572 203 KRLVLIELVNGS-FVILKEIQCMDGVKTMVWLN-DSIIVGTVNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 203 kki~i~~~~~~~-~~~~kei~~~~~~~~l~~~~-~~l~vg~~~~y~lidl~~g~~~~l~~~~ 262 (997)
..|.+|....++ ....+.+..+..+.+++|.. +.++++ .....++|+.+|+....++..
T Consensus 125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~-~~~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 125 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp CEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-SSSEEEECTTTCCEEEEECST
T ss_pred CeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEc-cCcEEEEeCCCCceecccccc
Confidence 567777765432 22233444566778888873 346664 556888999888776665543
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.86 E-value=2.1 Score=45.94 Aligned_cols=235 Identities=9% Similarity=-0.001 Sum_probs=122.0
Q ss_pred eeeeEEeecC--CeE-EEEcC---CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc---cCc
Q 043572 32 LSISPISDCQ--VLI-YIGTQ---SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD---VGK 102 (997)
Q Consensus 32 ~~I~ci~~~~--~~l-~iGT~---~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~---~~~ 102 (997)
..|.|++... ..+ ..|+. +|.+..|.+..... ....... ...+|..+...|. .+.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------------~~~~~~~----~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------------KLLREIE----KAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE------------EEEEEEE----ESSCEEEEECTTCCTTTCC
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc------------cceeeec----ccCcEEEEEEcCCCCCCce
Confidence 4788888653 344 46666 99999999875431 0111111 4668999999998 465
Q ss_pred EEEEecCCeEEEeecCccc-ccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccC
Q 043572 103 VLLLFCDQCLFLTDSLLTQ-PLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKAN 180 (997)
Q Consensus 103 lLv~l~d~~l~~~~l~~l~-~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 180 (997)
++++-.||.|.+|++..-. ++..+.. ...+..++..+.- . .+.
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~--------~s~---------------- 127 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-----------G--------IGE---------------- 127 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-----------G--------CC-----------------
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc-----------c--------cCC----------------
Confidence 6665558899999997654 3332221 1223333221100 0 000
Q ss_pred CccchhcccccCCceEEEEEEC-ceEEEEEEeCCe--EEEEEeEec--CCcceEEEE------eCCEEEEEEC-CcEEEE
Q 043572 181 GVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGS--FVILKEIQC--MDGVKTMVW------LNDSIIVGTV-NGYSLF 248 (997)
Q Consensus 181 g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~--~~~~kei~~--~~~~~~l~~------~~~~l~vg~~-~~y~li 248 (997)
++ ..++.+.. ..|.+|....+. ...++...- ...+.++.| .+..++.|.. ....++
T Consensus 128 -----------~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 128 -----------GA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp -----------CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred -----------Cc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 12 23444444 467888776542 222221111 225677774 2456777866 578899
Q ss_pred EecCCcceeeecCCCCCCCCceEEcC----CCCeEEEEe-CCeEEEEccC-CCccccccc---c---CCCCCeEEEeC--
Q 043572 249 SCVTGQSGVIFTLPDVSCPPMLKLLS----KEQKVLLLV-DNVGVFVDAH-GQPVGGSLV---F---RKSPDAVGELS-- 314 (997)
Q Consensus 249 dl~~g~~~~l~~~~~~~~~p~i~~~~----~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~---w---~~~P~~i~~~~-- 314 (997)
|+.++.......... ......+. +++.++.+. ++...+.|.. |.+.. .+. + ......+.+..
T Consensus 196 d~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 271 (357)
T 3i2n_A 196 DLRNMALRWETNIKN---GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK-GFASVSEKAHKSTVWQVRHLPQN 271 (357)
T ss_dssp ETTTTEEEEEEECSS---CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT-EEEEEEEECCSSCEEEEEEETTE
T ss_pred ECccCceeeecCCCC---ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc-ceeeeccCCCcCCEEEEEECCCC
Confidence 998876544333321 11122232 333444444 4455555543 33322 111 1 22233455543
Q ss_pred c-EEEEEE-CCeEEEEecCCC
Q 043572 315 M-YVVVLR-GGKMELYHKKSG 333 (997)
Q Consensus 315 P-Yll~~~-~~~ieI~~~~~~ 333 (997)
+ ++++.. ++.|.|+++.++
T Consensus 272 ~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 272 RELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEEEEETTSEEEEEEEECC
T ss_pred CcEEEEEeCCCcEEEeecCCC
Confidence 3 455444 578999998754
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=95.83 E-value=2.3 Score=44.83 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=49.7
Q ss_pred eeeEEeecC-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 33 SISPISDCQ-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 33 ~I~ci~~~~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
-.+|++... +.|.+|. ||.+..|....... .+..... -....|..+...|+.+.++.+-.||+
T Consensus 27 y~~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~-----------~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 27 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDI-----------LQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCE-----------EEEEECC----STTCCEEEEEECTTSSEEEEEETTSE
T ss_pred cceEEEECCCCEEEEEe-CCEEEEEECCCCCE-----------EEEEEec----CCCCeEEEEEECCCCCEEEEEECCCc
Confidence 357777544 4566665 89999998764321 1111111 14557999999999997777677899
Q ss_pred EEEeecCcccc
Q 043572 112 LFLTDSLLTQP 122 (997)
Q Consensus 112 l~~~~l~~l~~ 122 (997)
|.+|++..-++
T Consensus 91 v~iw~~~~~~~ 101 (318)
T 4ggc_A 91 VQLWDVQQQKR 101 (318)
T ss_dssp EEEEETTTTEE
T ss_pred EEEeecCCcee
Confidence 99999876544
No 101
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.69 E-value=1.8 Score=46.72 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=52.8
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
...|.|++..++.|+.|+.||.+..|.+..... .....+.. .-...+|..+..-|+.+.++.+-.|+
T Consensus 14 ~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~------------~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF------------TLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp SSCEEEEEEETTEEEEEESSSCEEEEECSSSCC------------EEEEEECT-TCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceeeeccCCCEEEEEcCCCEEEEEEecCCCe------------EEEEEEec-CCccCCEEEEEECCCCCEEEEEeCCC
Confidence 357888888788999999999999998864321 00111100 01456899999999888666655689
Q ss_pred eEEEeecCc
Q 043572 111 CLFLTDSLL 119 (997)
Q Consensus 111 ~l~~~~l~~ 119 (997)
+|.+|++..
T Consensus 81 ~v~iw~~~~ 89 (330)
T 2hes_X 81 TVSIWAKEE 89 (330)
T ss_dssp CEEEEEC--
T ss_pred cEEEEEccc
Confidence 999999853
No 102
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.69 E-value=3 Score=45.09 Aligned_cols=234 Identities=12% Similarity=-0.001 Sum_probs=130.8
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++.. ++.|+.|+.||.+..|....... ...+. ....+|..+..-|+.+.++.+-.|
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~--------------~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--------------VHAIP---LRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--------------EEEEE---CSSSCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc--------------ceEee---cCCccEEEEEECCCCCEEEEEeCC
Confidence 578888854 55899999999999998764321 11111 255689999999988866666668
Q ss_pred CeEEEeecCccccccc-cccccc----eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 110 QCLFLTDSLLTQPLKK-LGFLKG----ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~-~~~~kg----~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
+.+.+|++..-+.... .....| ++..+..
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------------------------------- 152 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---------------------------------------------- 152 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE----------------------------------------------
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEEC----------------------------------------------
Confidence 9999999865321100 000111 1111100
Q ss_pred hhcccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC--EEEEEE-CCcEEEEEecCCcceeee
Q 043572 185 KEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND--SIIVGT-VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~--~l~vg~-~~~y~lidl~~g~~~~l~ 259 (997)
.++ .++.+ ..+.|.+|....+... ..+. ..+.+.+++|..+ .++.|. .....+.|+.++.....+
T Consensus 153 ------~~~--~l~s~s~d~~i~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~ 222 (340)
T 1got_B 153 ------DDN--QIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222 (340)
T ss_dssp ------ETT--EEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred ------CCC--cEEEEECCCcEEEEECCCCcEE--EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Confidence 011 13333 3455778777655322 2332 2356789999853 466664 467889999887655444
Q ss_pred cCCCCCCCCceEEc-CCCCeEEEEe-CCeEEEEccC-CCccccccccCCC---CCeEEEe--CcEEEEEE-CCeEEEEec
Q 043572 260 TLPDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDAH-GQPVGGSLVFRKS---PDAVGEL--SMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 260 ~~~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w~~~---P~~i~~~--~PYll~~~-~~~ieI~~~ 330 (997)
.... .......+ +++..++.+. |+...+.|.. |.... ++..... ...+.+. ..++++-. ++.|.|.++
T Consensus 223 ~~h~--~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 223 TGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCc--CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 3211 11112233 3333444443 4556666653 22211 1222221 2233443 34776655 578999999
Q ss_pred CCCceEEEEec
Q 043572 331 KSGICVQAVTF 341 (997)
Q Consensus 331 ~~~~lvQ~i~~ 341 (997)
.++..++++.-
T Consensus 300 ~~~~~~~~~~~ 310 (340)
T 1got_B 300 LKADRAGVLAG 310 (340)
T ss_dssp TTCCEEEEEEC
T ss_pred ccCcEeeEeec
Confidence 99988888753
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.5 Score=58.02 Aligned_cols=169 Identities=10% Similarity=0.085 Sum_probs=100.8
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|+|++.. ++.|+.|+.||.+..|.+..... ....... ....+|..+...|. .+.++
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~------------~~~~~~~---~h~~~V~~v~~sp~~~~~~l~ 117 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW------------SQIAVHA---VHSASVNSVQWAPHEYGPLLL 117 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc------------ccccccc---CCCCCeEEEEECCCCCCCEEE
Confidence 3578998864 67899999999999999875421 0111111 25668999999998 77666
Q ss_pred EEecCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 105 LLFCDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
++-.||+|++|++..-..... .....+++.++..+....+.. . ..+
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~------------------~-------------~~~ 166 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG------------------E-------------HNG 166 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc------------------c-------------ccc
Confidence 666688999999876432211 122234566665432100000 0 000
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCC--eEEEEEeEec-CCcceEEEEeCC-----EEEEEE-CCcEEEEEec
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNG--SFVILKEIQC-MDGVKTMVWLND-----SIIVGT-VNGYSLFSCV 251 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~--~~~~~kei~~-~~~~~~l~~~~~-----~l~vg~-~~~y~lidl~ 251 (997)
.+ ++ ..++++. ...|.+|....+ .+.....+.. ...+.+++|..+ .++.|. .+...++|+.
T Consensus 167 ~~--------d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 167 TK--------ES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp CG--------GG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred CC--------CC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 00 11 2344444 456889888755 2344444432 456899999844 466665 4568899998
Q ss_pred CCc
Q 043572 252 TGQ 254 (997)
Q Consensus 252 ~g~ 254 (997)
++.
T Consensus 238 ~~~ 240 (753)
T 3jro_A 238 NEQ 240 (753)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.57 E-value=0.13 Score=54.90 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=41.9
Q ss_pred CcEEEcCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccccC
Q 043572 933 RHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 933 ~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~~~ 990 (997)
....+.+.-.|++|...+...+ +.||||.|...|.... ....|| |+..+....++|
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv--~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPC--ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEE--ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred cCCCCCcccCCcCcCCHhcCCe--ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 4445667889999998887643 5899999999998754 223499 999987665544
No 105
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=95.52 E-value=0.007 Score=47.05 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCcCccccCccCC--ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT--KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.+..|++|...+.. ...++.||||+||..|+... ....||.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr 50 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCC
Confidence 45789999999855 46888999999999999865 235688543
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.46 E-value=0.58 Score=52.89 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=90.4
Q ss_pred eeeeEEeec--CC-eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 32 LSISPISDC--QV-LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
..|.|++.. +. .|+.|+.+|.+..|.+........ ......... -...+|..|...|..+.+++ +.
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR-------VIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG-------EEECSEEEC---CCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-------eeccceeec---CCCCCEeeeEEeCCCCCEEEEEe
Confidence 467888864 33 799999999999999876432100 000011111 14568999999995554554 34
Q ss_pred cCCeEEEeecCccc---ccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 108 CDQCLFLTDSLLTQ---PLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 108 ~d~~l~~~~l~~l~---~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
.|+.|++|++..-. ++..+ ....+++.++.++
T Consensus 252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-------------------------------------------- 287 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-------------------------------------------- 287 (430)
T ss_dssp TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS--------------------------------------------
T ss_pred CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC--------------------------------------------
Confidence 58899999997642 22222 1122344444332
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--C-EEEEEE-CCcEEEEEecC
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--D-SIIVGT-VNGYSLFSCVT 252 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~-~l~vg~-~~~y~lidl~~ 252 (997)
++...++++. .+.|.+|.+.... ..+..+. ....+.++.|.. . .++.|. .+...++|+.+
T Consensus 288 --------~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 288 --------YSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp --------SCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred --------CCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 1112344443 4567888776421 1122222 345789999984 2 255554 45788899875
No 107
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.30 E-value=4.2 Score=44.29 Aligned_cols=198 Identities=10% Similarity=0.021 Sum_probs=108.4
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccc-----cccceEEEEeecccCCcccccccccccccccccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLG-----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANA 161 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~-----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (997)
...+|..+...|+ ++++++-.||+|++|++..-+...... -...|+.++..+
T Consensus 81 ~~~~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp---------------------- 137 (344)
T 4gqb_B 81 TEAGVADLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS---------------------- 137 (344)
T ss_dssp ESSCEEEEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT----------------------
T ss_pred cCCCEEEEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC----------------------
Confidence 4568999998887 457777789999999987643322111 011233333221
Q ss_pred CCcccchhhhhccCccccCCccchhcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CE-
Q 043572 162 STSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DS- 236 (997)
Q Consensus 162 ~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~- 236 (997)
++ ..++.+.. +.|.+|.+..+.. ++.+. -.+.|.++.|.. ..
T Consensus 138 ------------------------------dg-~~l~sgs~d~~i~iwd~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 138 ------------------------------SG-TQAVSGSKDICIKVWDLAQQVV--LSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp ------------------------------TS-SEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECSSCTTE
T ss_pred ------------------------------CC-CEEEEEeCCCeEEEEECCCCcE--EEEEcCcCCceEEEEecCCCCCc
Confidence 11 23444444 4588887766532 23332 245678898874 23
Q ss_pred EEEEE-CCcEEEEEecCCcceeeecCCCCCCCCceEEc-CCCCeEEEE-e-CCeEEEEcc-CCCccccccccCCC-CCeE
Q 043572 237 IIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLL-V-DNVGVFVDA-HGQPVGGSLVFRKS-PDAV 310 (997)
Q Consensus 237 l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~w~~~-P~~i 310 (997)
++-|. .+...+.|+.+++....+.....+.......+ +.++.++++ . |+...+.|. .|++.+ ++.-... ...+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-~~~~h~~~v~~v 263 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-SSAVHSQCVTGL 263 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-EEECCSSCEEEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-EEcCCCCCEEEE
Confidence 44444 46788999988865554433322222222233 334456554 3 455666675 344432 2222222 3355
Q ss_pred EEe---CcEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 311 GEL---SMYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 311 ~~~---~PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
++. ..||+... ++.|.|.++.++++++....
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H 298 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH 298 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC
Confidence 554 24566554 57899999999887765433
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.29 E-value=1.1 Score=50.44 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=53.0
Q ss_pred eeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEEEe
Q 043572 32 LSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv~l 107 (997)
..|+|++... +.|+.|+.+|.+..|.+........ .. ........+. -...+|..|...|... .++.+-
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~--~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PS--GECQPDLRLR---GHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TT--CCCCCSEEEE---CCSSCCCCEEECTTSTTEEEEEC
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--cc--ccCCCcEEec---CCCCCeEEEEeCCCCCCeEEEEe
Confidence 4788888764 3689999999999999975321100 00 0001111111 2566899999999877 566655
Q ss_pred cCCeEEEeecCc
Q 043572 108 CDQCLFLTDSLL 119 (997)
Q Consensus 108 ~d~~l~~~~l~~ 119 (997)
.||+|++|++..
T Consensus 202 ~dg~i~vwd~~~ 213 (430)
T 2xyi_A 202 DDHTICLWDINA 213 (430)
T ss_dssp TTSCEEEEETTS
T ss_pred CCCeEEEEeCCC
Confidence 689999999876
No 109
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.29 E-value=0.0087 Score=46.51 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=34.1
Q ss_pred EcCCCcCccccCccCC-ccEEEcC-CCeEEEecccccc--CcccCCCCC
Q 043572 937 INDESLCDSCHARLGT-KLFAMYP-DDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-~~f~v~p-~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
++++..|++|...+.. ....+.| |||+||..|+... ....||.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 50 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCC
Confidence 4677899999999865 3355666 9999999999864 245688554
No 110
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.76 Score=57.70 Aligned_cols=157 Identities=10% Similarity=0.101 Sum_probs=94.3
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|..|+.||.+..|...... .....+ .+.+|..+...| ...++.+-.|
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~--------------~~~~~~----~~~~V~~l~fsp-g~~L~S~s~D 78 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE--------------VVIKLE----DRSAIKEMRFVK-GIYLVVINAK 78 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCE--------------EEEECS----SCCCEEEEEEET-TTEEEEEETT
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE--------------EEEEcC----CCCCEEEEEEcC-CCEEEEEECc
Confidence 568888864 5689999999999988654321 111111 456899999998 4434443457
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
++|++|++..-+.+........|+.++.++
T Consensus 79 ~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-------------------------------------------------- 108 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTVFVPGKITSIDTDA-------------------------------------------------- 108 (902)
T ss_dssp CEEEEEETTTCSEEEEEECSSCEEEEECCT--------------------------------------------------
T ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEECC--------------------------------------------------
Confidence 899999987644332222112244444322
Q ss_pred ccCCceEEEEEEC-ceEEEEEEeCCeEEEEEe---------E-ecCCcceEEEEeC---CEEEEEECCcEEEEEecCCcc
Q 043572 190 HCRGDNVFAVIIG-KRLVLIELVNGSFVILKE---------I-QCMDGVKTMVWLN---DSIIVGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 190 ~~~~~~~l~Va~k-kki~i~~~~~~~~~~~ke---------i-~~~~~~~~l~~~~---~~l~vg~~~~y~lidl~~g~~ 255 (997)
++ ..++++.. ..|.+|.+..+.....+- . ...+.|.+++|.. +.+.+|...+-.+.|+.++..
T Consensus 109 --~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~ 185 (902)
T 2oaj_A 109 --SL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEI 185 (902)
T ss_dssp --TC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEE
T ss_pred --CC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCce
Confidence 11 23455544 457788776654321110 0 0135689999985 358888777666999988765
Q ss_pred eeeec
Q 043572 256 GVIFT 260 (997)
Q Consensus 256 ~~l~~ 260 (997)
...+.
T Consensus 186 ~~~~~ 190 (902)
T 2oaj_A 186 KQSFI 190 (902)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 54443
No 111
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.11 E-value=4.8 Score=43.85 Aligned_cols=243 Identities=9% Similarity=-0.002 Sum_probs=129.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++.. ++.|+-|+.||.+..|....... ..... .....|..+..-|+...++..-.|
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--------------~~~~~---~~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--------------EHAVT---MPCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------EEEEE---CSSSCCCEEEECTTSSEEEEESTT
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--------------ceEEe---cCCCCEEEEEECCCCCEEEEeeCC
Confidence 579999864 56899999999999998654321 00011 245578999999998866665568
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+++.+|++..-..... ......+..+. . . +. .+. +
T Consensus 128 ~~i~v~~~~~~~~~~~---~~~~~~~~~h~---~---------~-v~------------------------~~~----~- 162 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENM---AAKKKSVAMHT---N---------Y-LS------------------------ACS----F- 162 (354)
T ss_dssp SEEEEEECCCCTTCCS---GGGCEEEEECS---S---------C-EE------------------------EEE----E-
T ss_pred CCEEEEEEeccccccc---cccceeeeccC---C---------c-EE------------------------EEE----E-
Confidence 8999998854211100 01111111110 0 0 00 000 0
Q ss_pred ccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-CCcceEEEEe----CCEEEEEE-CCcEEEEEecCCcceeeecCC
Q 043572 190 HCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-MDGVKTMVWL----NDSIIVGT-VNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 190 ~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~----~~~l~vg~-~~~y~lidl~~g~~~~l~~~~ 262 (997)
..++ ..++.+ ..+.|.+|....+.. ++.+.- ...+.++.|. ++.++.|. .....+.|+.++.....+...
T Consensus 163 ~~~~-~~l~t~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h 239 (354)
T 2pbi_B 163 TNSD-MQILTASGDGTCALWDVESGQL--LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239 (354)
T ss_dssp CSSS-SEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred eCCC-CEEEEEeCCCcEEEEeCCCCeE--EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 0011 123334 445678887765532 233332 3456777774 34566665 467889999888765555322
Q ss_pred CCCCCCceEEcCCCCeEEEEe-CCeEEEEccCCCccccccccCC---CCCeEEEe--CcEEEEEE-CCeEEEEecCCCce
Q 043572 263 DVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFRK---SPDAVGEL--SMYVVVLR-GGKMELYHKKSGIC 335 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~~---~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~l 335 (997)
.... ..+..-+++..++.+. |....+.|.........+.-.. ....+.+. ..++++-. ++.|.|+++.++..
T Consensus 240 ~~~v-~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 240 ESDV-NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp SSCE-EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCe-EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 1110 0122223333444443 4566666653321100111111 11233333 45776655 56899999999988
Q ss_pred EEEEe
Q 043572 336 VQAVT 340 (997)
Q Consensus 336 vQ~i~ 340 (997)
++++.
T Consensus 319 ~~~l~ 323 (354)
T 2pbi_B 319 VSILF 323 (354)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87764
No 112
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.07 E-value=0.44 Score=51.22 Aligned_cols=153 Identities=13% Similarity=0.040 Sum_probs=92.2
Q ss_pred eeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..+++++.. +..++.|+.+|.+..|....... ...+. -...+|..|..-|+.+.++.+-
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-------------~~~~~----~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-------------KTNHI----GHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-------------EEEEC----CCSSCEEEEEECTTSSEEEEEE
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-------------eeEec----CCCCcEEEEEECCCCCEEEEEe
Confidence 456665532 22466788999999888764321 11111 1466899999999888666656
Q ss_pred cCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 108 CDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
.|+++++|++....++.....-..++.++..+
T Consensus 235 ~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------ 266 (340)
T 4aow_A 235 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSP------------------------------------------------ 266 (340)
T ss_dssp TTCEEEEEETTTTEEEEEEECSSCEEEEEECS------------------------------------------------
T ss_pred CCCeEEEEEeccCceeeeecCCceEEeeecCC------------------------------------------------
Confidence 68999999998766544332222333333211
Q ss_pred ccccCCceEEEEEECceEEEEEEeCCeEE-EEEe-------EecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCc
Q 043572 188 EQHCRGDNVFAVIIGKRLVLIELVNGSFV-ILKE-------IQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 188 ~~~~~~~~~l~Va~kkki~i~~~~~~~~~-~~ke-------i~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~ 254 (997)
....++.+....|.+|....+... .++. -..+..|.+++|.. ..|+.|.. ....+.|+.+|+
T Consensus 267 -----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 267 -----NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -----SSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -----CCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 113456677778888877654221 1111 11245678899974 45777755 568899999885
No 113
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.04 E-value=7.7 Score=45.87 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=52.1
Q ss_pred eeeeeEEeecCC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 31 SLSISPISDCQV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
...|+|++...+ .|+.|+.||.+..|...... ....++ -....|..+..-|+...++.+-
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--------------~~~~l~---~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------------FKSTFG---EHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------------EEEEEC---CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--------------Eeeeec---cccCceEEEEECCCCCEEEEEE
Confidence 357888886543 59999999999999754321 111111 1566899999999888555555
Q ss_pred cCCeEEEeecCcccc
Q 043572 108 CDQCLFLTDSLLTQP 122 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~ 122 (997)
.|++|++|++..-++
T Consensus 210 ~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTK 224 (611)
T ss_dssp TTSCEEEEETTTCCE
T ss_pred CCCcEEEEECCCCcE
Confidence 689999999865443
No 114
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.97 E-value=0.0086 Score=50.05 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=33.8
Q ss_pred CCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
+...|++|...+.. ..+.+.||||+||..|+... ....||.++
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr 67 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcC
Confidence 56789999999865 34677899999999999864 245699554
No 115
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.90 E-value=1.8 Score=46.96 Aligned_cols=160 Identities=9% Similarity=0.017 Sum_probs=93.9
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.|.+++. .++.|+.|+.||.+..|....... .....+.. -...+|..+..-|+.+.++.+-.|+
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-----------~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----------ICKSVLSE---GHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-----------EEEEEECS---SCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-----------eeeeeecc---ccCCcEEEEEECCCCCEEEEEECCC
Confidence 5666664 366899999999999998865421 00011111 1456899999999888666655689
Q ss_pred eEEEeecCccc--cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 111 CLFLTDSLLTQ--PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 111 ~l~~~~l~~l~--~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
++.+|++..-. .+..+. -...|..++..+
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp------------------------------------------------ 115 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAP------------------------------------------------ 115 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECT------------------------------------------------
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeC------------------------------------------------
Confidence 99999875421 111111 112233333322
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCC-eEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeee
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNG-SFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~-~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~ 259 (997)
++ ..++.+. .+.|.+|.+..+ .......+. ....+.++.|.. ..|+.|.. ....++|+.++......
T Consensus 116 ----~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~ 188 (345)
T 3fm0_A 116 ----SG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188 (345)
T ss_dssp ----TS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred ----CC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE
Confidence 11 1344443 456888888654 333333332 234678899984 45777754 56888998876544333
No 116
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.89 E-value=7.8 Score=45.21 Aligned_cols=229 Identities=11% Similarity=0.002 Sum_probs=118.2
Q ss_pred cceEEEeecccCcEEEEecCCeEEEeec--CccccccccccccceEEEEeecccCCccccccccccccccccccCCcccc
Q 043572 90 PVESIFVLDDVGKVLLLFCDQCLFLTDS--LLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQ 167 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d~~l~~~~l--~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (997)
.+..+.+-|+...+.++-.|++|.+|++ .+++.+..+.--.+...+++++..
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~-------------------------- 233 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK-------------------------- 233 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST--------------------------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCc--------------------------
Confidence 3777778888887888666889999999 555543333222233333332200
Q ss_pred hhhhhccCccccCCccchhcccccCCceEEEEEE--CceEEEEEEeCCeEEEEEeEec-----------CC-cceEEEEe
Q 043572 168 RLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII--GKRLVLIELVNGSFVILKEIQC-----------MD-GVKTMVWL 233 (997)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~--kkki~i~~~~~~~~~~~kei~~-----------~~-~~~~l~~~ 233 (997)
| .++ ..++|+- ...|.++.... .+.++.+.. ++ .+.++.+.
T Consensus 234 -------------~---------~dg-~~l~v~~~~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 234 -------------G---------YED-RYTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp -------------T---------CTT-TEEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred -------------C---------CCC-CEEEEEEccCCeEEEEeccc--cccceeecccCcccCccccccCCceEEEEEC
Confidence 0 011 1344443 56677765443 333444433 22 35666666
Q ss_pred --CCEEEEEEC--CcEEEEEecCCccee--eecCCCCCCCCceEEcCCCCeEE-EEe--CCeEEEEcc-CCCcccccccc
Q 043572 234 --NDSIIVGTV--NGYSLFSCVTGQSGV--IFTLPDVSCPPMLKLLSKEQKVL-LLV--DNVGVFVDA-HGQPVGGSLVF 303 (997)
Q Consensus 234 --~~~l~vg~~--~~y~lidl~~g~~~~--l~~~~~~~~~p~i~~~~~~~e~L-l~~--~~~g~fv~~-~G~~~r~~i~w 303 (997)
+..+++... ....++|+.++.... .++. +..|.-..++.++.++ ++. ++....+|. +|+... ++.=
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~-~i~~ 364 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA-LVDV 364 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-EEEC
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE-eecc
Confidence 345555543 467888887654332 2222 1223333444344544 443 345555776 454432 2221
Q ss_pred CCC--C-CeEEEeC---cEEEEE---ECCeEEEEecCC-------CceEEEEecCCCCCCCceecccccCCCcEEEEEc-
Q 043572 304 RKS--P-DAVGELS---MYVVVL---RGGKMELYHKKS-------GICVQAVTFGGEGGGQCIATDEECGAGKLLVVAT- 366 (997)
Q Consensus 304 ~~~--P-~~i~~~~---PYll~~---~~~~ieI~~~~~-------~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s- 366 (997)
... | ....+.. -.+++. .++.|.|.++.+ ...+|+++..+.. +.++-. +. +|+.+++.+
T Consensus 365 g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-~~~v~~--~p-dg~~l~v~~~ 440 (543)
T 1nir_A 365 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-SLFIKT--HP-KSSHLYVDTT 440 (543)
T ss_dssp SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCEEC--CT-TCCEEEECCT
T ss_pred CCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-ceEEEc--CC-CCCcEEEecC
Confidence 112 2 2233322 234433 358999999988 8899999876531 122322 21 345566665
Q ss_pred -------CCeEEEEeecC
Q 043572 367 -------PTKVICYQKVP 377 (997)
Q Consensus 367 -------~~~V~~l~~~~ 377 (997)
+..|..+....
T Consensus 441 ~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TCSSHHHHTCEEEEETTC
T ss_pred CCCCcccCceEEEEECCC
Confidence 23555555443
No 117
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=94.85 E-value=0.42 Score=53.37 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=56.9
Q ss_pred eeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEE
Q 043572 34 ISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLF 113 (997)
Q Consensus 34 I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~ 113 (997)
|++++..++.|++| .+|.|..|.+...... .. .. ..+.+|.+|..++. + ++++..||+|+
T Consensus 90 V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~-------------~~-~~---~~~~~v~~i~~~~p-~-~av~~~dG~L~ 149 (388)
T 1xip_A 90 VIFVCFHGDQVLVS-TRNALYSLDLEELSEF-------------RT-VT---SFEKPVFQLKNVNN-T-LVILNSVNDLS 149 (388)
T ss_dssp EEEEEEETTEEEEE-ESSEEEEEESSSTTCE-------------EE-EE---ECSSCEEEEEECSS-E-EEEEETTSEEE
T ss_pred eeEEEECCCEEEEE-cCCcEEEEEchhhhcc-------------Cc-cc---eeecceeeEEecCC-C-EEEEECCCCEE
Confidence 77777767789999 8898999988754321 01 01 13457888887765 3 66658999999
Q ss_pred EeecCccccccccccccceEEEEeec
Q 043572 114 LTDSLLTQPLKKLGFLKGISVIAKRI 139 (997)
Q Consensus 114 ~~~l~~l~~~~~~~~~kg~~~f~~~~ 139 (997)
+|++.+....+ -..+|+++|+.+
T Consensus 150 v~dl~~~~~~~---~~~~Vs~v~WSp 172 (388)
T 1xip_A 150 ALDLRTKSTKQ---LAQNVTSFDVTN 172 (388)
T ss_dssp EEETTTCCEEE---EEESEEEEEECS
T ss_pred EEEccCCcccc---ccCCceEEEEcC
Confidence 99998644321 235788888754
No 118
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.80 E-value=5.4 Score=42.90 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=79.4
Q ss_pred EEEEE--CceEEEEEEe-CCeEEEEEeEecC--CcceEEEEeC--CEEEEEEC--CcEEEEEecC--CcceeeecCC--C
Q 043572 197 FAVII--GKRLVLIELV-NGSFVILKEIQCM--DGVKTMVWLN--DSIIVGTV--NGYSLFSCVT--GQSGVIFTLP--D 263 (997)
Q Consensus 197 l~Va~--kkki~i~~~~-~~~~~~~kei~~~--~~~~~l~~~~--~~l~vg~~--~~y~lidl~~--g~~~~l~~~~--~ 263 (997)
++|+. .++|.+|.+. .+.+.....+..+ ..|..++|.. ..++++.. +...+++++. |....+.... .
T Consensus 154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 233 (347)
T 3hfq_A 154 LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP 233 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence 44443 4578899887 4556655544443 2578888884 45777643 4677888874 5433222111 1
Q ss_pred CC----CCCceEEcCCCCeEE-EE-e-CCeEEEEcc--CCCcccc-cccc-CCCCCeEEEe--CcEEEEEE--CCeEEEE
Q 043572 264 VS----CPPMLKLLSKEQKVL-LL-V-DNVGVFVDA--HGQPVGG-SLVF-RKSPDAVGEL--SMYVVVLR--GGKMELY 328 (997)
Q Consensus 264 ~~----~~p~i~~~~~~~e~L-l~-~-~~~g~fv~~--~G~~~r~-~i~w-~~~P~~i~~~--~PYll~~~--~~~ieI~ 328 (997)
.. ..|.-..+..++.+| ++ . ++....++. .|....- .+.- ...|..+++. .-||++.. .+.|.|+
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 11 123334454455655 33 2 344444443 3433221 2222 2458888886 33777765 3689999
Q ss_pred e--cCCCceEE---EEecCC
Q 043572 329 H--KKSGICVQ---AVTFGG 343 (997)
Q Consensus 329 ~--~~~~~lvQ---~i~~~~ 343 (997)
. ..+|.+.+ .+.++.
T Consensus 314 ~~d~~tg~l~~~~~~~~~p~ 333 (347)
T 3hfq_A 314 ARDLTSGKLSLLQKDVTVPE 333 (347)
T ss_dssp EECTTTCCEEEEEEEEECTT
T ss_pred EEeCCCCeEEecccceecCC
Confidence 4 45677653 345554
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.79 E-value=1.1 Score=48.37 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=53.8
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEe--ecccCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFV--LDDVGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~v--l~~~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... .... -...+|..+.. -++.+.++.+
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------~~~~----~~~~~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA--------------IQIA----QHDAPVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------EEEE----ECSSCEEEEEEEECSSCEEEEEE
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc--------------eeec----cccCceEEEEEEeCCCCCEEEEc
Confidence 4578888864 56899999999999998875331 1111 15678999998 5555545554
Q ss_pred ecCCeEEEeecCcccccc
Q 043572 107 FCDQCLFLTDSLLTQPLK 124 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~ 124 (997)
-.|+.|++|++..-+++.
T Consensus 148 ~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 148 SWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp ETTSEEEEECSSCSSCSE
T ss_pred cCCCcEEEEECCCCcEEE
Confidence 558999999987755543
No 120
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.76 E-value=2.5 Score=45.80 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=87.9
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc---------
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV--------- 100 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~--------- 100 (997)
..|.|++.. ++.|+.|+.||.+..|.+...... ..... . -....|..+..-|..
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-----------~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-----------SSAEK-E---NHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-----------ECCTT-T---SCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-----------eeecc-c---CCCceeeeeeeccccccccccCCC
Confidence 478888864 568999999999999988632110 00000 0 133456666666554
Q ss_pred -CcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccc
Q 043572 101 -GKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIK 178 (997)
Q Consensus 101 -~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 178 (997)
..++.+-.|++|.+|+... ....... -...+..++..+
T Consensus 184 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~s~--------------------------------------- 223 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISP--------------------------------------- 223 (343)
T ss_dssp CCEEEEEETTSEEEEEETTT-EEEEEEECCSSCEEEEEECT---------------------------------------
T ss_pred CCEEEEEcCCCEEEEEcCCC-ceeEEEcCccccceEEEECC---------------------------------------
Confidence 4344444588999999421 1111110 111233333221
Q ss_pred cCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEEecCCcc
Q 043572 179 ANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lidl~~g~~ 255 (997)
++ ..|+.+. .+.|.+|.+.... ...+.+.....+.+++|.. ..+.+|......++|+.++..
T Consensus 224 -------------~g-~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 224 -------------NG-KYIATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp -------------TS-SEEEEEETTCEEEEEESSCCS-SCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred -------------CC-CEEEEEcCCCeEEEEECCCCc-ccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence 12 2344444 4568888773321 1112233455688999884 357788888999999987765
Q ss_pred ee
Q 043572 256 GV 257 (997)
Q Consensus 256 ~~ 257 (997)
.+
T Consensus 289 ~~ 290 (343)
T 2xzm_R 289 AP 290 (343)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 121
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.73 E-value=2.5 Score=47.36 Aligned_cols=201 Identities=12% Similarity=0.010 Sum_probs=106.9
Q ss_pred CCCcceEEEeec-ccCcEEEEecCCeEEEeecCcccc------ccccccccceEEEEeecccCCcccccccccccccccc
Q 043572 87 ADSPVESIFVLD-DVGKVLLLFCDQCLFLTDSLLTQP------LKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLA 159 (997)
Q Consensus 87 ~~~~I~qi~vl~-~~~~lLv~l~d~~l~~~~l~~l~~------~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 159 (997)
...+|..|...| +.+.++.+-.||+|.+|++...+. .....-...|+.++..+
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------------- 121 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-------------------- 121 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--------------------
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC--------------------
Confidence 457899999999 777565555688999999866221 11111122344444322
Q ss_pred ccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEEC-ceEEEEEEe---CC-e-----EEEEEeEec-----C
Q 043572 160 NASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELV---NG-S-----FVILKEIQC-----M 224 (997)
Q Consensus 160 ~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~---~~-~-----~~~~kei~~-----~ 224 (997)
++ ..++++.. ..|.+|.+. .+ . ...++.+.+ .
T Consensus 122 --------------------------------~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 122 --------------------------------NF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168 (437)
T ss_dssp --------------------------------TS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC
T ss_pred --------------------------------CC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccc
Confidence 11 23444443 567788773 22 1 112334432 2
Q ss_pred CcceEEEEe----CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEE-Ee-CCeEEEEccC-CCc
Q 043572 225 DGVKTMVWL----NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLL-LV-DNVGVFVDAH-GQP 296 (997)
Q Consensus 225 ~~~~~l~~~----~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~-G~~ 296 (997)
+.+.++.+. ++.++.|.. ....++|+.++.....+.............+..++.+|+ +. |+...+.|.. |.+
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 345666644 455777765 578899998876655554321111122233333445554 43 4555666643 333
Q ss_pred cccccccCCC--CCeEEEeC------cEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 297 VGGSLVFRKS--PDAVGELS------MYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 297 ~r~~i~w~~~--P~~i~~~~------PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
.+ ++..... ...+.+.. .++++-. ++.|.|.++.++..++++.-
T Consensus 249 ~~-~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 249 IR-SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp EE-EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred EE-EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 22 2222211 22332221 1666554 45799999999998888763
No 122
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.67 E-value=2.2 Score=46.22 Aligned_cols=171 Identities=11% Similarity=0.047 Sum_probs=102.3
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCCcceEEEE-eCCEEEEEE--CCcEEEEEecCCcceeeecCCCC---CCCC
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMDGVKTMVW-LNDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDV---SCPP 268 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~-~~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~---~~~p 268 (997)
+.|+.. ..|.++.... .+..+.+.....|..+++ .++.++|+. .....++|+.+++....++.+.. ...|
T Consensus 56 lyv~~~~~~~v~viD~~t--~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINT--FKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST 133 (328)
T ss_dssp EEEEEGGGTEEEEEETTT--CCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred EEEEEcCCCEEEEEECcc--cEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence 455544 4566655443 344455555577889988 567899997 57889999998887766665431 1134
Q ss_pred ceEEcCCCCeEEEEe---CCeEEEEccC-CCccccccccCCCCCeEEEeC-cEEEEEE--C----------CeEEEEecC
Q 043572 269 MLKLLSKEQKVLLLV---DNVGVFVDAH-GQPVGGSLVFRKSPDAVGELS-MYVVVLR--G----------GKMELYHKK 331 (997)
Q Consensus 269 ~i~~~~~~~e~Ll~~---~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~~-PYll~~~--~----------~~ieI~~~~ 331 (997)
.-..+. ++.+.++. ++....+|.. |... .++.-...|..+++.. --+++.. . +.|.+++..
T Consensus 134 ~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~-~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 134 EQMVQY-GKYVYVNCWSYQNRILKIDTETDKVV-DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp CCEEEE-TTEEEEEECTTCCEEEEEETTTTEEE-EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEE-EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 322233 44666663 4556667764 4333 2444456688888764 2333333 2 579999999
Q ss_pred CCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEEee
Q 043572 332 SGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 332 ~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
++.+++++.++....+..+..+ .+++.+|++.. .|+.+.+
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~---~d~~~lyv~~~-~v~~~d~ 251 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLN---GTRDTLYWINN-DIWRMPV 251 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEEC---TTSCEEEEESS-SEEEEET
T ss_pred CCeEEEEEecCCCCCceeEEEe---cCCCEEEEEcc-EEEEEEC
Confidence 9999999987642111222221 12455666665 7777654
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.64 E-value=5.7 Score=46.38 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=91.3
Q ss_pred EEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEe------CCEEEEEE--CCcEEEEEecCCcceeeecCCCC--
Q 043572 196 VFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL------NDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDV-- 264 (997)
Q Consensus 196 ~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~------~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~-- 264 (997)
.++|+. ...|.+|.........++++.....|.+++|. |..++++. ...+.++|..+++....++..+.
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred EEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 344444 35677777621224555667666778999886 34688885 57899999988877666654321
Q ss_pred -------CCCCc-eEEcCCCCeEEEEe--CCeEEEEccC-CCccc-cccccCCCCCeEEEeC--cEEEEEE--CCeEEEE
Q 043572 265 -------SCPPM-LKLLSKEQKVLLLV--DNVGVFVDAH-GQPVG-GSLVFRKSPDAVGELS--MYVVVLR--GGKMELY 328 (997)
Q Consensus 265 -------~~~p~-i~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r-~~i~w~~~P~~i~~~~--PYll~~~--~~~ieI~ 328 (997)
..++. +..-+++++++++. ++....+|.. +.... .++.-...|..+++.. -|+++.. .+.|.|.
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 11222 22223455777664 3455566653 32221 1333345688888863 3777654 5899999
Q ss_pred ecCCCceEEEEec
Q 043572 329 HKKSGICVQAVTF 341 (997)
Q Consensus 329 ~~~~~~lvQ~i~~ 341 (997)
+..++.++++++.
T Consensus 352 D~~tg~l~~~i~~ 364 (543)
T 1nir_A 352 DSKDRRLSALVDV 364 (543)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEeecc
Confidence 9999999999985
No 124
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=94.61 E-value=0.014 Score=47.68 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=34.1
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCC-CCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSIT-GRDFK 984 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t-~~~f~ 984 (997)
+.+..|++|...+.. ..+..||||.||..|.... ....||. ...+.
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSN-YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCS-CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccC-CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 356789999998875 3467899999999999763 2356994 44443
No 125
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.55 E-value=0.023 Score=46.45 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=34.1
Q ss_pred cCCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 938 NDESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.....|++|...+.. ...++.||||+||..|+... ....||.++
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr 58 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcC
Confidence 456789999998864 45778899999999999864 235699554
No 126
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.50 E-value=0.038 Score=46.36 Aligned_cols=49 Identities=8% Similarity=0.194 Sum_probs=36.2
Q ss_pred EcCCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCC-CCCCC
Q 043572 937 INDESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITG-RDFKK 985 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~-~~f~~ 985 (997)
+.....|++|...+.. ..+.+.||||+||..|+... ....||.+ ..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3456799999999875 35667899999999999864 34569944 44433
No 127
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.38 E-value=6.6 Score=42.97 Aligned_cols=237 Identities=15% Similarity=0.108 Sum_probs=114.5
Q ss_pred eeeEEeecCCeEEEEcC-----------CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC
Q 043572 33 SISPISDCQVLIYIGTQ-----------SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG 101 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~-----------~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~ 101 (997)
.+.|++..++.++.|.. ++.+..|.+........ ......+... .-....+.-+..-|+..
T Consensus 75 ~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 75 SPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE-------FLTSVDFDAS-TNADDYTKLVYISREGT 146 (365)
T ss_dssp CCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE-------EEEEECSSCC-CCTTCCEEEEEECTTSS
T ss_pred ceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE-------Eeeeeceeec-CCcccCEEEEEEcCCCC
Confidence 56788888888888764 55677776654331100 0000111100 00112344556667777
Q ss_pred cEEEEec--CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc
Q 043572 102 KVLLLFC--DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA 179 (997)
Q Consensus 102 ~lLv~l~--d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 179 (997)
.++++-+ |++|++|++...+++..+.-...|..++..+
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp---------------------------------------- 186 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST---------------------------------------- 186 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT----------------------------------------
T ss_pred EEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc----------------------------------------
Confidence 5544222 6799999998766544332222344444322
Q ss_pred CCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC--EEEEEECC-----cEEEEEec
Q 043572 180 NGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND--SIIVGTVN-----GYSLFSCV 251 (997)
Q Consensus 180 ~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~--~l~vg~~~-----~y~lidl~ 251 (997)
++ ..++.+..+.+.++....+......... -...+.++.|..+ .++.|... .....|+.
T Consensus 187 ------------dg-~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 187 ------------DG-KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp ------------TS-SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred ------------CC-ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence 11 2456666777777665544333222111 2235678888743 45555433 24556665
Q ss_pred CCcceee--ecCCCCCCCCc-eEEcCCCCeEEEE--eCCeEEEEcc-CCCcccccccc-CCCCCeEEEe--CcEEEEEE-
Q 043572 252 TGQSGVI--FTLPDVSCPPM-LKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR- 321 (997)
Q Consensus 252 ~g~~~~l--~~~~~~~~~p~-i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~- 321 (997)
++..... ...... ..++ ...+.+++.+|.+ .|+...+.|. +|.+.+..+.= ......+++. ..||+..+
T Consensus 254 ~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp TTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred cceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence 5443222 111111 1222 2334445566654 3455556665 45543211111 1223345553 33676554
Q ss_pred CCeEEEEecC
Q 043572 322 GGKMELYHKK 331 (997)
Q Consensus 322 ~~~ieI~~~~ 331 (997)
+++|.|.++.
T Consensus 333 D~tvrvw~ip 342 (365)
T 4h5i_A 333 ANTIHIIKLP 342 (365)
T ss_dssp TSEEEEEECC
T ss_pred CCeEEEEEcC
Confidence 5678888764
No 128
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.36 E-value=6.3 Score=41.81 Aligned_cols=226 Identities=8% Similarity=0.034 Sum_probs=119.3
Q ss_pred EEee--cCCeEEEEcC-CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC--
Q 043572 36 PISD--CQVLIYIGTQ-SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ-- 110 (997)
Q Consensus 36 ci~~--~~~~l~iGT~-~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~-- 110 (997)
+++. .++.||+++. +|.+..|....... ...... ....++..+.+-|+.+.+++ ..++
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------------~~~~~~---~~~~~~~~~~~s~dg~~l~~-~~~~~~ 106 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------------KVVAIQ---EGQSSMADVDITPDDQFAVT-VTGLNH 106 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSC-------------EEEEEE---ECSSCCCCEEECTTSSEEEE-CCCSSS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-------------eEEecc---cCCCCccceEECCCCCEEEE-ecCCCC
Confidence 4443 4556888876 78888776654321 011111 24445555888888886664 6655
Q ss_pred --eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 111 --CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 111 --~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
.|.+|++..-+.+..+..-.+...+++++
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp------------------------------------------------- 137 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFISTIPIPYDAVGIAISP------------------------------------------------- 137 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECCTTEEEEEECT-------------------------------------------------
T ss_pred cccEEEEECCCCCeEEEEECCCCccceEECC-------------------------------------------------
Confidence 89999987654433222222233333322
Q ss_pred cccCCceEEEEE-EC-ce-EEEEEEeCC-eEEE--EEeEecCCcceEEEEeC--CEEEEEEC--CcEEEEEecCCcc---
Q 043572 189 QHCRGDNVFAVI-IG-KR-LVLIELVNG-SFVI--LKEIQCMDGVKTMVWLN--DSIIVGTV--NGYSLFSCVTGQS--- 255 (997)
Q Consensus 189 ~~~~~~~~l~Va-~k-kk-i~i~~~~~~-~~~~--~kei~~~~~~~~l~~~~--~~l~vg~~--~~y~lidl~~g~~--- 255 (997)
++.. ++++ .. .+ +.+|.+..+ .... .+.+.....+..+.|.. ..++++.. +...++|+.+++.
T Consensus 138 ---dg~~-l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 138 ---NGNG-LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp ---TSSC-EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred ---CCCE-EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 1111 3333 22 55 888887653 2222 22233345678898884 35777764 4688999998876
Q ss_pred eeeecCCCCCCCCceEEcCCCCeEEE-Ee--CCeEEEEccC-CCcccc-----ccccCCCC----CeEEEe--CcEEEEE
Q 043572 256 GVIFTLPDVSCPPMLKLLSKEQKVLL-LV--DNVGVFVDAH-GQPVGG-----SLVFRKSP----DAVGEL--SMYVVVL 320 (997)
Q Consensus 256 ~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~--~~~g~fv~~~-G~~~r~-----~i~w~~~P----~~i~~~--~PYll~~ 320 (997)
...++.+ ..|.-..+..++.+|. +. ++....+|.. |....- .+.....| ..+++. .-++++.
T Consensus 214 ~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 214 LNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 5455543 2343334443446544 32 2334446654 444110 11111111 223443 3466655
Q ss_pred E--CCeEEEEecCCCc
Q 043572 321 R--GGKMELYHKKSGI 334 (997)
Q Consensus 321 ~--~~~ieI~~~~~~~ 334 (997)
. .+.|.|+++.+..
T Consensus 291 ~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 291 ANISRELKVFTISGKV 306 (331)
T ss_dssp ETTTTEEEEEETTSCE
T ss_pred cCCCCcEEEEEecCCc
Confidence 4 3578888887643
No 129
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.30 E-value=1.5 Score=47.66 Aligned_cols=152 Identities=6% Similarity=0.024 Sum_probs=92.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|....... .....++ -...+|..+..-|+.+.++.+-.|
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~------------~~~~~~~---~h~~~v~~v~~sp~~~~l~s~s~D 126 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF------------ECVTTLE---GHENEVKSVAWAPSGNLLATCSRD 126 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E------------EEEEEEC---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe------------EEEEEcc---CCCCCceEEEEeCCCCEEEEEECC
Confidence 468888864 66899999999999998765321 0111111 146689999999988866665568
Q ss_pred CeEEEeecCccccccccc----cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 110 QCLFLTDSLLTQPLKKLG----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
++|++|++..-.....+. -...+..++..+
T Consensus 127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p---------------------------------------------- 160 (345)
T 3fm0_A 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------------------------------------------- 160 (345)
T ss_dssp SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS----------------------------------------------
T ss_pred CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC----------------------------------------------
Confidence 999999986532211111 112233333221
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEEC-CcEEEEEec
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGTV-NGYSLFSCV 251 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~~-~~y~lidl~ 251 (997)
++. .++.+. .+.|.+|....+.+.....+.- ...|.+++|.. ..|+.|.. ....+.|..
T Consensus 161 ------~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 161 ------SQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp ------SSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ------CCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 111 244444 4568888887766554444432 34678999984 45666654 467777764
No 130
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.18 E-value=2.1 Score=50.04 Aligned_cols=157 Identities=5% Similarity=-0.060 Sum_probs=96.3
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
+..|.+++.. |..|..|+.+|.+..|.....- ..+..+..+..+.|..+..-|+.+.+.++-.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l---------------~~l~~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKML---------------TNLDSKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEE---------------EECCCSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCcee---------------eeccCCCccccccEEEEEEcCCCCEEEEEcC
Confidence 3457777754 6689999999999998732200 0000000023456999999999998888667
Q ss_pred CCeEEEeecCcccc-------ccccc-----cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 109 DQCLFLTDSLLTQP-------LKKLG-----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 109 d~~l~~~~l~~l~~-------~~~~~-----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
||+|.+|++..-.. +..+. -...|..++..+
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP------------------------------------- 192 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE------------------------------------- 192 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-------------------------------------
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-------------------------------------
Confidence 89999999865211 01100 001122222211
Q ss_pred cccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEE-EEEeEe-c-CCcceEEEEeCCEEEEEECCcEEEEEecCC
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFV-ILKEIQ-C-MDGVKTMVWLNDSIIVGTVNGYSLFSCVTG 253 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~-~~kei~-~-~~~~~~l~~~~~~l~vg~~~~y~lidl~~g 253 (997)
++ .++....+.+.+|.+.++... ..+.+. . ...|.+++|.|+.|..|..+...+.|+.++
T Consensus 193 ---------------dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~ 255 (588)
T 2j04_A 193 ---------------DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNY 255 (588)
T ss_dssp ---------------TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTT
T ss_pred ---------------Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCC
Confidence 22 345555677888888766532 122231 2 256899999987888888889999999866
Q ss_pred cce
Q 043572 254 QSG 256 (997)
Q Consensus 254 ~~~ 256 (997)
...
T Consensus 256 ~~~ 258 (588)
T 2j04_A 256 SIS 258 (588)
T ss_dssp EEE
T ss_pred eEE
Confidence 553
No 131
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.14 E-value=2.9 Score=44.79 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=21.0
Q ss_pred EEEEEECCeEEEEecCCCceEEEEecCC
Q 043572 316 YVVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 316 Yll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++++. .+.|.++++.+++.++++....
T Consensus 269 ~l~~~-~~~v~~~d~~~~~~~~~~~~~~ 295 (349)
T 1jmx_B 269 QIYGV-LNRLAKYDLKQRKLIKAANLDH 295 (349)
T ss_dssp EEEEE-ESEEEEEETTTTEEEEEEECSS
T ss_pred EEEEE-cCeEEEEECccCeEEEEEcCCC
Confidence 55544 6789999999999999887654
No 132
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.14 E-value=6.5 Score=41.39 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=48.8
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEEe
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~l 107 (997)
..|.|++. .++.|+.|+.||.+..|.+..... +....++ -...+|..+...+. .+.++.+-
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------------~~~~~l~---gH~~~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------------KLIDTLT---GHEGPVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------------CCCEEEC---CCSSCEEEEEECCGGGCSEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------------EEEEEEc---cccCCeEEEEecCCCcCCEEEEEc
Confidence 45777664 477899999999999999864321 0111111 15678999988754 34344444
Q ss_pred cCCeEEEeecCc
Q 043572 108 CDQCLFLTDSLL 119 (997)
Q Consensus 108 ~d~~l~~~~l~~ 119 (997)
.|++|++|++..
T Consensus 75 ~D~~v~iWd~~~ 86 (297)
T 2pm7_B 75 YDGKVMIWKEEN 86 (297)
T ss_dssp TTTEEEEEEBSS
T ss_pred CCCEEEEEEcCC
Confidence 589999999864
No 133
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.13 E-value=4.7 Score=49.50 Aligned_cols=278 Identities=10% Similarity=0.101 Sum_probs=135.5
Q ss_pred CCCCCccceeeeeEEee-cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC
Q 043572 23 YSRSSPIRSLSISPISD-CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG 101 (997)
Q Consensus 23 ~~~~~~~~~~~I~ci~~-~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~ 101 (997)
++..--+..+.|.||.. .+..|++||.+| |..|.=..-..+. ..+ ..+. .++...|..|...++..
T Consensus 34 ~~~~~gLs~n~v~~I~qD~~G~lWigT~~G-L~ryDG~~f~~~~-~~~-----~~~~------~l~~n~I~~i~~d~~g~ 100 (795)
T 4a2l_A 34 ISINEGLSQSTVFSIDQDKRGNMWFATYDG-VNKYDGYAFTVYQ-HNE-----DDPN------SIANDISRIVKTDSQGR 100 (795)
T ss_dssp ESGGGTCSSSCEEEEEECTTSCEEEEETTE-EEEECSSCEEEEC-CCT-----TCTT------SCSCSCEEEEEECTTSC
T ss_pred ccccCCCccceeEEEEEcCCCCEEEeecCc-CcccCCCceEEEe-CCC-----CCCC------cccccceeEEEECCCCC
Confidence 33333355678999875 456899999999 6666422111100 000 0000 13445688877665544
Q ss_pred cEEEEecCCeEEEeecCc--ccccccccccc--ceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc
Q 043572 102 KVLLLFCDQCLFLTDSLL--TQPLKKLGFLK--GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI 177 (997)
Q Consensus 102 ~lLv~l~d~~l~~~~l~~--l~~~~~~~~~k--g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (997)
+.| -+++.|..|+... +.......... .+..++.+
T Consensus 101 -lWi-gT~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d--------------------------------------- 139 (795)
T 4a2l_A 101 -VWI-GTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEI--------------------------------------- 139 (795)
T ss_dssp -EEE-EESSCEEEEETTTTEEEEECCEETTEECCCCEEEEE---------------------------------------
T ss_pred -EEE-EeCCchheeCCCCCeEEeccccccCCCceEEEEEEC---------------------------------------
Confidence 888 6777788887643 22111000000 01111111
Q ss_pred ccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC-Cc-ceEEEEe-CCEEEEEEC-CcEEEEEecCC
Q 043572 178 KANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM-DG-VKTMVWL-NDSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~-~~-~~~l~~~-~~~l~vg~~-~~y~lidl~~g 253 (997)
..-.+.|++.+.|..|....+.|..... ..+ .. +.++... ++.|.+|+. .+...+|..++
T Consensus 140 ---------------~~g~lwi~t~~gl~~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~ 203 (795)
T 4a2l_A 140 ---------------SPEQLLISTPEGLIMFDIKESKFIDDSF-STAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQK 203 (795)
T ss_dssp ---------------ETTEEEEEETTEEEEEETTTTEEECSSS-CHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTC
T ss_pred ---------------CCCCEEEEECCceEEEECCCCEEEeccC-CCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCC
Confidence 1124778888877777655555554321 111 12 6677665 577999987 58889998776
Q ss_pred cceeeecCCCCCCCCceEEc--CCCCeEEEEeCCeEEE-EccCCCcccccccc--------CCC-CCeEEEe-CcEEEEE
Q 043572 254 QSGVIFTLPDVSCPPMLKLL--SKEQKVLLLVDNVGVF-VDAHGQPVGGSLVF--------RKS-PDAVGEL-SMYVVVL 320 (997)
Q Consensus 254 ~~~~l~~~~~~~~~p~i~~~--~~~~e~Ll~~~~~g~f-v~~~G~~~r~~i~w--------~~~-P~~i~~~-~PYll~~ 320 (997)
......+... ...+..+ ..++.+.+++.+-|++ ++..+...+ .+.. +.. ...+..+ .-.|.+-
T Consensus 204 ~~~~~~~~~~---~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig 279 (795)
T 4a2l_A 204 TFEKVIPILG---TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNRLWIG 279 (795)
T ss_dssp CEEECC-------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSCEEEE
T ss_pred eEEEecCCCC---CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCCEEEE
Confidence 6554422211 1223222 2345788887544444 565432211 1111 011 1122222 2344444
Q ss_pred ECCeEEEEecCCCceEEEEecC---CCCCCCceecccccCCCcEEEEEcC-CeEEEEee
Q 043572 321 RGGKMELYHKKSGICVQAVTFG---GEGGGQCIATDEECGAGKLLVVATP-TKVICYQK 375 (997)
Q Consensus 321 ~~~~ieI~~~~~~~lvQ~i~~~---~~~~~~~i~~~~~~~~g~~~~v~s~-~~V~~l~~ 375 (997)
+.++|.+++..++.......-+ .......+.+.+....|. +++++. +.|+++.+
T Consensus 280 t~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 280 TFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp ESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred eCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence 4558888887776543322111 111112222222222334 667764 66777654
No 134
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=94.11 E-value=0.018 Score=50.11 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.+..|++|...+.. ....+.||||+||..|+... ....||.++
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 84 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcC
Confidence 45689999988865 34667899999999999863 345799654
No 135
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.93 E-value=5.8 Score=42.58 Aligned_cols=160 Identities=8% Similarity=0.063 Sum_probs=88.5
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|.|++.. ++.|+.|+.||.+..|......... ...+....++ -...+|..+..-|+.+.++.+-.
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~-------~~~~~~~~~~---~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT-------FEMDLLAIIE---GHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC--------------CCCEEEEEEC-------CEEEEEECTTSCEEEEEET
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc-------ccceeEEEEc---CCCCcEEEEEECCCCCEEEEEeC
Confidence 3468888864 5679999999999999885432100 0001111111 15668999999998875665555
Q ss_pred CCeEEEeecCcc----ccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 109 DQCLFLTDSLLT----QPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 109 d~~l~~~~l~~l----~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
|++|++|++..- +++..+. -...|+.++.++
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-------------------------------------------- 163 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-------------------------------------------- 163 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS--------------------------------------------
T ss_pred CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC--------------------------------------------
Confidence 899999998431 1111111 111233333221
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC----EEEEEE-CCcEEEEEecCC
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND----SIIVGT-VNGYSLFSCVTG 253 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~----~l~vg~-~~~y~lidl~~g 253 (997)
++ ..++.+. .+.|.+|....+.+..+..+.- ...|.++.|..+ .|+.|. .+...+.|+.++
T Consensus 164 --------~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 164 --------SE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp --------SS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred --------CC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 11 1244443 4568888876655555554432 346788888753 466664 456788887643
No 136
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.93 E-value=0.039 Score=45.78 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=34.7
Q ss_pred EcCCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 937 INDESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
+.++..|++|...+.. ..+.+.||||+||..|+... ....||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr 59 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN 59 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcC
Confidence 4567899999999875 34667799999999999864 235799443
No 137
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.85 E-value=1.7 Score=49.05 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=49.6
Q ss_pred eeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCC
Q 043572 34 ISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQ 110 (997)
Q Consensus 34 I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~ 110 (997)
+.|++. .++.|+.|+.+|.+..|.+..... ..+ + ....+|..|..-|..+.++++- .|+
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~--------------~~~-~---~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKEL--------------WNL-R---MHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSSCBC--------------CCS-B---CCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCccee--------------EEE-e---cccceEEeeeecCCCceEEEEecCcc
Confidence 455553 466899999999999998753211 011 1 2567899999999887666533 478
Q ss_pred eEEEeecCcccc
Q 043572 111 CLFLTDSLLTQP 122 (997)
Q Consensus 111 ~l~~~~l~~l~~ 122 (997)
+|.+|++.....
T Consensus 274 ~v~iwd~~~~~~ 285 (435)
T 4e54_B 274 TVKIWDLRQVRG 285 (435)
T ss_dssp BCCEEETTTCCS
T ss_pred eeeEEecccccc
Confidence 999999877553
No 138
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.79 E-value=0.029 Score=46.21 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=36.8
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIKP 991 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~~ 991 (997)
.+...|++|...+... +..||||+||..|+... ....|| -...+....+.+|
T Consensus 13 ~~~~~C~IC~~~~~~~--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP--VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SSCCBCSSSSSBCSSE--EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCCccCCcccCCC--EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 3567899999888654 45699999999998864 235699 5555555444443
No 139
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.69 E-value=8.9 Score=42.01 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=118.8
Q ss_pred eeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCc-EEEEecCC
Q 043572 34 ISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGK-VLLLFCDQ 110 (997)
Q Consensus 34 I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~-lLv~l~d~ 110 (997)
|.|++. .++.|+.|+.||.+..|.+.......+..+ ....+. -.+..|..+...|..+. ++.+-.|+
T Consensus 111 v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~~---gh~~~v~~~~~~~~~~~~l~s~s~D~ 180 (380)
T 3iz6_a 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMP-------VSRVLT---GHKGYASSCQYVPDQETRLITGSGDQ 180 (380)
T ss_dssp CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSST-------TCCBCC---CCSSCCCCCBCCSSSSSCEEEECTTS
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcc-------ceeecc---CCCcceEEEEEecCCCCEEEEECCCC
Confidence 444443 467899999999999999865432111100 111111 14567888888887554 44444578
Q ss_pred eEEEeecCcccccccc------ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 111 CLFLTDSLLTQPLKKL------GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~------~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
++.+|++..-..+... .-...+..++..+
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------------------------------------------- 215 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS--------------------------------------------- 215 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS---------------------------------------------
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec---------------------------------------------
Confidence 9999998764332211 0111222222211
Q ss_pred hhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcceeeec
Q 043572 185 KEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~l~~ 260 (997)
.++...+.....+.|.+|...... ..++.+. ....|.+++|.. ..++.|. .....+.|+.+|.....+.
T Consensus 216 ------~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 ------LNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp ------SSCCEEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred ------CCCCEEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 011122233345567887765221 1122222 235688999984 4566664 4578999999887665554
Q ss_pred CCCC---CCCCce--EEcCCCCeEEEE-e-CCeEEEEcc-CCCcccc--cc-c-cCCCCCeEEEe--CcEEEEEE-CCeE
Q 043572 261 LPDV---SCPPML--KLLSKEQKVLLL-V-DNVGVFVDA-HGQPVGG--SL-V-FRKSPDAVGEL--SMYVVVLR-GGKM 325 (997)
Q Consensus 261 ~~~~---~~~p~i--~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~--~i-~-w~~~P~~i~~~--~PYll~~~-~~~i 325 (997)
.... ...+.+ ..+..++.+|++ . |+...+.|. .|..... .+ . -......+++. ..+|+.-. ++.|
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 3211 112222 333334455554 2 344444553 2332211 10 0 01223344443 33555443 4567
Q ss_pred EEEecCC
Q 043572 326 ELYHKKS 332 (997)
Q Consensus 326 eI~~~~~ 332 (997)
.|.++..
T Consensus 369 ~iW~~~~ 375 (380)
T 3iz6_a 369 KIWAFSG 375 (380)
T ss_dssp EEEECCS
T ss_pred EEEecCC
Confidence 7776654
No 140
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.67 E-value=0.031 Score=46.17 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=35.1
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC-----cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG-----ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~-----~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+... ++.||||.||..|+.... ...|| -++.+...
T Consensus 17 ~~~~~~C~IC~~~~~~~--~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP--VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSE--EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCe--EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45678999999988753 335999999999998753 23699 55555443
No 141
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.64 E-value=0.032 Score=47.37 Aligned_cols=43 Identities=7% Similarity=0.090 Sum_probs=31.1
Q ss_pred CCCcCccccCccCC------------c-cEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT------------K-LFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~------------~-~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
++..|++|...+.. . ..+.-+|||+||..|+..- ....||.++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 71 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcC
Confidence 56779999998853 2 3444569999999999863 345799554
No 142
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=93.46 E-value=0.033 Score=46.74 Aligned_cols=52 Identities=6% Similarity=-0.022 Sum_probs=38.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~~~~ 990 (997)
+.++-.|++|...+...+ +.||||.||..|..... ...|| ++..+....+.+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv--~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPV--IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp CSSSSSCTTTSCCCSSEE--EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred CcccCCCCCccccccCCE--EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 556789999999887643 35999999999997642 45699 888876654443
No 143
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=93.43 E-value=0.023 Score=46.72 Aligned_cols=50 Identities=14% Similarity=0.337 Sum_probs=36.5
Q ss_pred EcCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~ 986 (997)
..++..|++|...+.. ...+..||||+||..|+... ....|| -...+...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999988754 34578899999999999764 245799 44445443
No 144
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=93.29 E-value=0.041 Score=49.25 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.1
Q ss_pred CCCcCccccCccCCc----------------cEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGTK----------------LFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~----------------~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
++..|++|...+... .++.-||||.||..|+..- ....||.++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 96 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCC
Confidence 567899999888643 3667899999999999873 346799544
No 145
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.27 E-value=11 Score=41.00 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred EEeCCEEEEEE-CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC-CeEEEEcc-CCCccccccccCC--
Q 043572 231 VWLNDSIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD-NVGVFVDA-HGQPVGGSLVFRK-- 305 (997)
Q Consensus 231 ~~~~~~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~-~~g~fv~~-~G~~~r~~i~w~~-- 305 (997)
...++.++++. ......+|..+|+..--.+.+.. ..+...++.+.++.. +....+|. +|+. .|..
T Consensus 236 ~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~-----~~~~~~~~~l~~~~~~g~l~~~d~~tG~~-----~w~~~~ 305 (376)
T 3q7m_A 236 VVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSV-----NDFIVDGNRIYLVDQNDRVMALTIDGGVT-----LWTQSD 305 (376)
T ss_dssp EEETTEEEEECTTSCEEEEETTTCCEEEEECCCCE-----EEEEEETTEEEEEETTCCEEEEETTTCCE-----EEEECT
T ss_pred EEECCEEEEEecCcEEEEEECCCCcEEeeccCCCC-----CCceEECCEEEEEcCCCeEEEEECCCCcE-----EEeecc
Confidence 34578888886 45788899988876544443321 111112335555543 34555664 4543 3422
Q ss_pred ----CCCeEEEeCcEEEEEEC-CeEEEEecCCCceEEEEecCCC-CCCCceecccccCCCcEEEEEc-CCeEEEEe
Q 043572 306 ----SPDAVGELSMYVVVLRG-GKMELYHKKSGICVQAVTFGGE-GGGQCIATDEECGAGKLLVVAT-PTKVICYQ 374 (997)
Q Consensus 306 ----~P~~i~~~~PYll~~~~-~~ieI~~~~~~~lvQ~i~~~~~-~~~~~i~~~~~~~~g~~~~v~s-~~~V~~l~ 374 (997)
.....++...+|++... +.|.+.+..+|+.+....+... ..+...+. .+. +++.+ ++.|+++.
T Consensus 306 ~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-----~~~-l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 306 LLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-----DGK-LLIQAKDGTVYSIT 375 (376)
T ss_dssp TTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-----TTE-EEEEBTTSCEEEEE
T ss_pred cCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-----CCE-EEEEeCCCEEEEEe
Confidence 12334556678877764 5799999999999888877432 11111221 234 44554 56788775
No 146
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=93.26 E-value=0.022 Score=51.94 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCCcCccccCccCCc----------------cEEEcCCCeEEEeccccccC-------cccCCCCC
Q 043572 939 DESLCDSCHARLGTK----------------LFAMYPDDTIVCYKCYRRQG-------ESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~----------------~f~v~p~g~~~H~~C~~~~~-------~~~~~t~~ 981 (997)
++..|++|...+... ...+.||||+||..|+.... ...||.++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR 89 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCC
Confidence 567899999888532 34478999999999987532 45799554
No 147
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.24 E-value=12 Score=41.42 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCcccccc----cc-ccccceEEEEeecccCCcccccccccccccccccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLK----KL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANA 161 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~----~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (997)
....|..+...|....++.+-.|+.+.+|+...-+... .. .....|..++..+.
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~--------------------- 287 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW--------------------- 287 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT---------------------
T ss_pred cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC---------------------
Confidence 45678888888888866665568899999986543211 11 11112333332211
Q ss_pred CCcccchhhhhccCccccCCccchhcccccCCceEEEEEE---CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CE
Q 043572 162 STSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII---GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DS 236 (997)
Q Consensus 162 ~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~---kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~ 236 (997)
+...++++. .+.|.+|....+ .....+.....+.++.|.. +.
T Consensus 288 -------------------------------~~~~la~~~gs~D~~I~iwd~~t~--~~~~~~~~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 288 -------------------------------QSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKE 334 (420)
T ss_dssp -------------------------------CTTEEEEEECTTTCEEEEEETTTT--EEEEEEECSSCEEEEEEETTTTE
T ss_pred -------------------------------cccEEEEEeecCCCEEEEEeCCcc--ccceeeccccceeeeeecCCCCe
Confidence 112234443 356788776654 3334455667788888884 45
Q ss_pred EEEEE---CCcEEEEEecCCcceeee
Q 043572 237 IIVGT---VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 237 l~vg~---~~~y~lidl~~g~~~~l~ 259 (997)
+++|. .+...++|+.+++....+
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l 360 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAEL 360 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEE
Confidence 76664 357888998877543333
No 148
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.18 E-value=0.018 Score=47.19 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=32.7
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITG 980 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~ 980 (997)
+.+...|++|...+.. ++.||||.||..|+... ....||.+
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~C 54 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSDRHRNCPIC 54 (70)
T ss_dssp CCCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSCCCSSCHHH
T ss_pred CCCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHHCcCcCCCc
Confidence 4567899999998876 77899999999999864 24568833
No 149
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.09 E-value=1.9 Score=52.07 Aligned_cols=76 Identities=16% Similarity=-0.049 Sum_probs=53.7
Q ss_pred eeeeEEeecC----CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISDCQ----VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~~----~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..|+|++... ..|+.|+.||.+..|.+..... ...+. -+..+|..+...|+.+.++.+-
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--------------~~~~~---~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--------------RSTLA---GHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--------------EEEEc---CCCCCEEEEEEeCCCCEEEEEe
Confidence 3588888653 3589999999999998864321 11111 1456899999999888555555
Q ss_pred cCCeEEEeecCcccccc
Q 043572 108 CDQCLFLTDSLLTQPLK 124 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~ 124 (997)
.|++|++|++..-.++.
T Consensus 581 ~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp TTSBCEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCceEE
Confidence 68899999987755443
No 150
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=93.03 E-value=1.3 Score=48.57 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=45.4
Q ss_pred CeEEE--EcCCceEEEEEeCCCCCCCCCCCCC-CCCccc-cccccccccCCCcceEEEeecccCcEEEEecCCe-EEEee
Q 043572 42 VLIYI--GTQSGSLILLSLDPTAATTLHVPNT-TPSQQH-VSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC-LFLTD 116 (997)
Q Consensus 42 ~~l~i--GT~~G~ll~y~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~-l~~~~ 116 (997)
+.+.+ |+.+|.+..|.+...........+. .....+ ...++ -...+|..+..-|+...++.+-.|++ +.+|+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 55555 7888888888876532100000000 000001 11111 25678999999998886666556888 99999
Q ss_pred cCccccccc
Q 043572 117 SLLTQPLKK 125 (997)
Q Consensus 117 l~~l~~~~~ 125 (997)
+...+++..
T Consensus 225 ~~~~~~~~~ 233 (355)
T 3vu4_A 225 TEDGVLVRE 233 (355)
T ss_dssp TTTCCEEEE
T ss_pred CCCCcEEEE
Confidence 987655443
No 151
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=92.86 E-value=0.17 Score=47.75 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCC-CCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITG-RDFK 984 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~-~~f~ 984 (997)
++-.|++|...+... +..||||.||..|+... ....||.+ ..+.
T Consensus 52 ~~~~C~iC~~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA--VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE--EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc--eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345799999888753 45799999999998764 24569954 4443
No 152
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=92.73 E-value=4.6 Score=49.62 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=53.1
Q ss_pred EEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeecCC--CCCC-CCc
Q 043572 196 VFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFTLP--DVSC-PPM 269 (997)
Q Consensus 196 ~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~~~--~~~~-~p~ 269 (997)
.+.|++. +.|..|....+.+...........+.++... ++.|.+|+. .+...+|..+++........ ..+. ...
T Consensus 185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (795)
T 4a2l_A 185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNY 264 (795)
T ss_dssp EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence 4667775 4666665545555543221112346666654 467999984 58999998766554432211 0111 122
Q ss_pred eEEc--CCCCeEEEEeCCeEEE-EccC
Q 043572 270 LKLL--SKEQKVLLLVDNVGVF-VDAH 293 (997)
Q Consensus 270 i~~~--~~~~e~Ll~~~~~g~f-v~~~ 293 (997)
|..+ ..++.+.+++++ |++ ++..
T Consensus 265 i~~i~~d~~g~lWigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIGTFN-DLNIYHEG 290 (795)
T ss_dssp EEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred EEEEEEcCCCCEEEEeCC-hhheEcCC
Confidence 3333 345688888877 665 4543
No 153
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.72 E-value=11 Score=39.50 Aligned_cols=168 Identities=10% Similarity=0.070 Sum_probs=94.1
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|.|++.. ++.|+-|+.||.+..|.+..... .....+. ....+|..+...|. ...++
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~------------~~~~~~~---~h~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW------------SQIAVHA---VHSASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB------------CCCEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce------------EEEEEee---cCCCceeEEEeCcCCCCcEEE
Confidence 3578888853 67899999999999999864321 0011111 14568999999887 45455
Q ss_pred EEecCCeEEEeecCcccccc--c-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 105 LLFCDQCLFLTDSLLTQPLK--K-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~--~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
++-.|+++.+|++..-.... . ..-..+|..++..+....+ .+.+ .+
T Consensus 118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~----------------------------~~~~---~~ 166 (297)
T 2pm7_B 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE----------------------------DGEH---NG 166 (297)
T ss_dssp EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc----------------------------cccC---CC
Confidence 54568899999986532110 0 0112234444443311000 0000 00
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCCe--EEEEEeEec-CCcceEEEEeCC-----EEEEEE-CCcEEEEEec
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGS--FVILKEIQC-MDGVKTMVWLND-----SIIVGT-VNGYSLFSCV 251 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~--~~~~kei~~-~~~~~~l~~~~~-----~l~vg~-~~~y~lidl~ 251 (997)
. .....++.+. .+.|.+|.+..+. +.....+.- .+.|.+++|..+ .|..|. .+...+.|++
T Consensus 167 ~---------~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 167 T---------KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred C---------CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 0 0112455554 4568999887642 334444432 346899999853 355554 4578889987
Q ss_pred CC
Q 043572 252 TG 253 (997)
Q Consensus 252 ~g 253 (997)
++
T Consensus 238 ~~ 239 (297)
T 2pm7_B 238 NE 239 (297)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 154
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=92.71 E-value=0.031 Score=44.70 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=35.0
Q ss_pred CCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCc
Q 043572 939 DESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKD 986 (997)
Q Consensus 939 ~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~ 986 (997)
++..|++|...+.. ..++..||||+||..|.... ....|| -...+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 45789999998854 34677899999999999864 245699 44445443
No 155
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.35 E-value=21 Score=41.79 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=87.8
Q ss_pred EEEEEECc-eEEEEEEeCCeEEEEEeEecCCcceEEEEe------CCEEEEEE--CCcEEEEEecCCcceeeecCCCCC-
Q 043572 196 VFAVIIGK-RLVLIELVNGSFVILKEIQCMDGVKTMVWL------NDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVS- 265 (997)
Q Consensus 196 ~l~Va~kk-ki~i~~~~~~~~~~~kei~~~~~~~~l~~~------~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~- 265 (997)
+++|+... .|.+|.......+...++.....|..+.+. |..++|+. .+.+.++|..+.+....++.....
T Consensus 210 ~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 210 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred EEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 35555543 566666531234556777777788899887 34688873 478999998887766666654210
Q ss_pred ------CCCceEE---cCCCCeEEEEeC--CeEEEEccCCCc-cc-cccccCCCCCeEEEeC--cEEEEEE--CCeEEEE
Q 043572 266 ------CPPMLKL---LSKEQKVLLLVD--NVGVFVDAHGQP-VG-GSLVFRKSPDAVGELS--MYVVVLR--GGKMELY 328 (997)
Q Consensus 266 ------~~p~i~~---~~~~~e~Ll~~~--~~g~fv~~~G~~-~r-~~i~w~~~P~~i~~~~--PYll~~~--~~~ieI~ 328 (997)
..|.+.. -+...+|++... +...++|..... .. .++.-...|..+.+.. -|+++.. .+.|.|+
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 1222222 233457777643 455566654321 10 1222233444555542 4777654 6899999
Q ss_pred ecCCCceEEEEec
Q 043572 329 HKKSGICVQAVTF 341 (997)
Q Consensus 329 ~~~~~~lvQ~i~~ 341 (997)
+..++.++.+++.
T Consensus 370 D~~t~kl~~~i~v 382 (567)
T 1qks_A 370 DTKEGKLVAIEDT 382 (567)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999999999987
No 156
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.33 E-value=2.1 Score=47.22 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=51.7
Q ss_pred eeeeEEee---cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISD---CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~---~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|.|+.. .++.++.|+.||.+..|.+..... ....+. -...+|..+...|+.+.++.+-.
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------AVRTYH---GHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------CCEEEC---CCSSCCCEEEECTTSSEEEEECS
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------ceEEEC---CcCCCeEEEEEecCCCeEEEEcC
Confidence 45666665 356789999999999998863321 011111 14668999999999886666556
Q ss_pred CCeEEEeecCccc
Q 043572 109 DQCLFLTDSLLTQ 121 (997)
Q Consensus 109 d~~l~~~~l~~l~ 121 (997)
|+++++|++..-.
T Consensus 270 D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 270 DGTCRLFDMRTGH 282 (380)
T ss_dssp SSCEEEEETTTTE
T ss_pred CCeEEEEECCCCc
Confidence 8899999987643
No 157
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.29 E-value=25 Score=42.59 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=70.0
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEe--EecC-CcceEEEEe-CCEEEEEECCcEEEEEecCCcceeeecCCC-CC-CCCc
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKE--IQCM-DGVKTMVWL-NDSIIVGTVNGYSLFSCVTGQSGVIFTLPD-VS-CPPM 269 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~ke--i~~~-~~~~~l~~~-~~~l~vg~~~~y~lidl~~g~~~~l~~~~~-~~-~~p~ 269 (997)
.+.|++.+.+..|....+.|..+.. -.++ ..+.++... ++.|.+|+.++...+|..++..... +.+. .. ....
T Consensus 114 ~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~ 192 (758)
T 3ott_A 114 TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI-PLPVHSSQSNLF 192 (758)
T ss_dssp EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE-CCCCCTTCSSCC
T ss_pred cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe-cCCCccccccce
Confidence 4788888876666655556655411 1122 245676655 4679999999988898776654332 2221 11 1223
Q ss_pred eEEc--C-CCCeEEEEeCCeEEE-EccCCCccccccccCC-CCCeEEEe-CcEEEEEECCeEEEEecCCCce
Q 043572 270 LKLL--S-KEQKVLLLVDNVGVF-VDAHGQPVGGSLVFRK-SPDAVGEL-SMYVVVLRGGKMELYHKKSGIC 335 (997)
Q Consensus 270 i~~~--~-~~~e~Ll~~~~~g~f-v~~~G~~~r~~i~w~~-~P~~i~~~-~PYll~~~~~~ieI~~~~~~~l 335 (997)
+..+ . .++.+.+++++ |++ ++......+..-..+. ....+..+ .-.|.+-+.+.+.+++..++..
T Consensus 193 i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 193 VNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL 263 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCC
T ss_pred eEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcE
Confidence 4333 2 23357777754 655 5643321111000010 11122222 2234444566788888766544
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=92.19 E-value=3.3 Score=43.92 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=52.4
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCC------cceEEEEe--CCEEEEEE-------------CCcEEEEEecCC
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMD------GVKTMVWL--NDSIIVGT-------------VNGYSLFSCVTG 253 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~------~~~~l~~~--~~~l~vg~-------------~~~y~lidl~~g 253 (997)
++|+.. ..|.+|....++ ..+.+..+. .+..+.|. ++.++++. .....++|+.++
T Consensus 48 l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 125 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL 125 (337)
T ss_dssp EEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred EEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC
Confidence 445543 356666654443 333444443 67788887 45688884 478899999888
Q ss_pred cceeeecCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccC
Q 043572 254 QSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAH 293 (997)
Q Consensus 254 ~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~ 293 (997)
+....++.+. .|.-..+..++.+|+..++....+|..
T Consensus 126 ~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~i~~~d~~ 162 (337)
T 1pby_B 126 SRRKAFEAPR---QITMLAWARDGSKLYGLGRDLHVMDPE 162 (337)
T ss_dssp EEEEEEECCS---SCCCEEECTTSSCEEEESSSEEEEETT
T ss_pred cEEEEEeCCC---CcceeEECCCCCEEEEeCCeEEEEECC
Confidence 7666665532 233333443445444435555556653
No 159
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.98 E-value=0.044 Score=44.14 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=34.9
Q ss_pred CCCcCccccC-ccCCc--cEEEcCCCeEEEecccccc---CcccCC-CCCCCCCcc
Q 043572 939 DESLCDSCHA-RLGTK--LFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDV 987 (997)
Q Consensus 939 ~~~~C~vC~k-~l~~~--~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~ 987 (997)
++..|++|.. .+.+. .+++.||||+||..|+... ....|| -++.+.+.-
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 4568999998 66543 3567899999999999876 335699 555554443
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=91.89 E-value=16 Score=39.36 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred EEEEEE--CceEEEEEEeCCeEEEEEeEecC----CcceEEEEe--CCEEEEEEC---CcEEEEEec--CCcceeeecCC
Q 043572 196 VFAVII--GKRLVLIELVNGSFVILKEIQCM----DGVKTMVWL--NDSIIVGTV---NGYSLFSCV--TGQSGVIFTLP 262 (997)
Q Consensus 196 ~l~Va~--kkki~i~~~~~~~~~~~kei~~~----~~~~~l~~~--~~~l~vg~~---~~y~lidl~--~g~~~~l~~~~ 262 (997)
.++|+. ..+|.+|.+..+.+.....+... ..+..+.|. |..|+++.. +...+++++ +|....+-...
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 355555 56789999887777666655432 235688887 445877754 468888885 55544443222
Q ss_pred CCCCCCceEEcCCCCeEEEEeC---C-eEEE-Ecc-CCCcc
Q 043572 263 DVSCPPMLKLLSKEQKVLLLVD---N-VGVF-VDA-HGQPV 297 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~Ll~~~---~-~g~f-v~~-~G~~~ 297 (997)
. +..|.-..+..++.+|++.+ + +.+| +|. .|...
T Consensus 304 ~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 304 T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 2 33455445554556555432 2 3444 564 45544
No 161
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=91.85 E-value=0.054 Score=45.46 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=35.1
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---------cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---------ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---------~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+..... .||||.||..|+.... ...|| -+..+...
T Consensus 9 ~~~~~~C~IC~~~~~~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4567889999988876433 6999999999998642 34699 44555543
No 162
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.80 E-value=0.034 Score=44.51 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=27.6
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
+.++..|++|...+...+ +.||||+||..|+...
T Consensus 17 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPV--TIDCGHNFCLKCITQI 50 (63)
T ss_dssp CCCCCBCTTTCSBCSSCE--ECTTSSEECHHHHHHH
T ss_pred CccCCCCCcCCchhCCeE--EeCCCCcchHHHHHHH
Confidence 556789999998887643 3499999999999865
No 163
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=91.70 E-value=5.7 Score=40.95 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=87.1
Q ss_pred EEEEEeEecCCcc--eEEEEeCCEEEEEECC----cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCe
Q 043572 215 FVILKEIQCMDGV--KTMVWLNDSIIVGTVN----GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNV 286 (997)
Q Consensus 215 ~~~~kei~~~~~~--~~l~~~~~~l~vg~~~----~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~ 286 (997)
+..+++++.+... +.+.|.++.|++++.. ....+|+.+|++..-.+.+.....--+...+ +.+.+. .++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~~ 86 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSSE
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCCE
Confidence 5667787654443 7899999999999775 6889999999887766665321111233332 344444 4788
Q ss_pred EEEEccC-CCccccccccCCCCCeEEEeCcEEEEE-ECCeEEEEecCCCceEEEEecCC
Q 043572 287 GVFVDAH-GQPVGGSLVFRKSPDAVGELSMYVVVL-RGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 287 g~fv~~~-G~~~r~~i~w~~~P~~i~~~~PYll~~-~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+..+|.. ++.. +++.....+-.++...-.+++- ..+.|.+++..|...+.+|.+..
T Consensus 87 v~v~D~~tl~~~-~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 87 GFVYDLATLTPR-ARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp EEEEETTTTEEE-EEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEECCcCcEE-EEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence 8889974 4433 3666667777888776655554 35789999999999999998753
No 164
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.60 E-value=15 Score=38.67 Aligned_cols=132 Identities=9% Similarity=0.049 Sum_probs=77.7
Q ss_pred eEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--EEEEEEC--Cc-EEEEEecCCc-ce----eeecCCCCCCCCceEEc
Q 043572 204 RLVLIELVNGSFVILKEIQCMDGVKTMVWLND--SIIVGTV--NG-YSLFSCVTGQ-SG----VIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 204 ki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~l~vg~~--~~-y~lidl~~g~-~~----~l~~~~~~~~~p~i~~~ 273 (997)
.|.+|....++ ..+.+.....+..++|..+ .++++.. .. ..+++++.+. .. ..++. +..|.-..+
T Consensus 109 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~ 183 (331)
T 3u4y_A 109 NMQSYSFLKNK--FISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG---GTRPFNITF 183 (331)
T ss_dssp EEEEEETTTTE--EEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS---SSSEEEEEE
T ss_pred cEEEEECCCCC--eEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC---CCCccceEE
Confidence 67777665543 3345556677889999854 5777743 45 7888876432 21 12222 233544455
Q ss_pred CCCCe-EEEEe--CCeEEEEcc-CCCcc--ccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCCCce--EEEEe
Q 043572 274 SKEQK-VLLLV--DNVGVFVDA-HGQPV--GGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKSGIC--VQAVT 340 (997)
Q Consensus 274 ~~~~e-~Ll~~--~~~g~fv~~-~G~~~--r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~~~l--vQ~i~ 340 (997)
..++. ++++. ++....++. .|... ..++.-...|..+++. ..|+++.. .+.|.|+++.++.+ ++++.
T Consensus 184 spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 184 TPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 44445 44443 345555665 35541 1244445678888886 45777664 45799999999887 66654
No 165
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.34 E-value=0.099 Score=44.81 Aligned_cols=49 Identities=8% Similarity=0.141 Sum_probs=35.9
Q ss_pred EcCCCcCccccCccCCcc--EEEcCCCeEEEeccccccC-----cccCCCCC-CCCC
Q 043572 937 INDESLCDSCHARLGTKL--FAMYPDDTIVCYKCYRRQG-----ESTSITGR-DFKK 985 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~--f~v~p~g~~~H~~C~~~~~-----~~~~~t~~-~f~~ 985 (997)
+.+...|++|...+.... .++.||||.||..|+.... ...||.++ .+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456788999999987632 5678999999999998652 25699443 4433
No 166
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.33 E-value=0.091 Score=44.63 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=35.0
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--------CcccCCC-CCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--------GESTSIT-GRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--------~~~~~~t-~~~f~~~ 986 (997)
+.+...|++|...+.... +.||||.||..|+... ....||. ...+...
T Consensus 16 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL--SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB--CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCCce--eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 456789999999887643 3599999999999864 1456994 4445443
No 167
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.90 E-value=0.046 Score=42.76 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=31.3
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc-----CcccCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ-----GESTSIT 979 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~-----~~~~~~t 979 (997)
+.+...|++|...+.... +.||||+||..|+... ....||.
T Consensus 12 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPV--IIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSSCC--CCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred cccCCCCccCCcccCccE--eCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 456789999999987653 3699999999999865 2345664
No 168
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.74 E-value=0.043 Score=44.62 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=33.6
Q ss_pred EcCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCCCC
Q 043572 937 INDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSITG 980 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~t~ 980 (997)
+.+...|++|...+.. ..+++.||||+||..|+... ....||.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~C 62 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTT
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCC
Confidence 4567899999988754 23578899999999999865 24569944
No 169
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=90.46 E-value=0.043 Score=49.16 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=76.4
Q ss_pred HHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhC
Q 043572 803 ILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETL 882 (997)
Q Consensus 803 ~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~l 882 (997)
++|.|.+++++|+.+.- +-+.+..|++++..-++.++-..||++++...+ .+--...|-...+.|.|..||++-
T Consensus 14 ~~ykkN~rw~qSI~L~K-kDkLykDAietAa~S~d~elaEeLL~yFVe~g~-----kEcF~A~LytCYdLlrpDvVLEla 87 (125)
T 3qil_A 14 LVPRGSHMWKQSVELAK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEK-----RECFGACLFTCYDLLRPDVVLELA 87 (125)
T ss_dssp CCSSSCCCCSSCCCCCS-CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSCS-----HHHHHHHHHHHTTCSCTTHHHHTT
T ss_pred chhhccccHHHHHHHHH-hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-----hHHHHHHHHHHHhccChHHHHHHH
Confidence 35677788888887776 457788999999999999999999999998743 344557777888999999999986
Q ss_pred CCCcchhhhHHHHHHHHHHHHHH
Q 043572 883 SPDMPLQLASDTILRMLRARLHH 905 (997)
Q Consensus 883 P~~~~i~~l~~fL~~~l~~~~~~ 905 (997)
=-+--.+-..+|+++++++++.+
T Consensus 88 Wr~~l~Df~mPY~Iqv~re~~~k 110 (125)
T 3qil_A 88 WRHNIMDFAMPYFIQVMKEYLTK 110 (125)
T ss_dssp SSSSCCCCCCCSHHHHHHHHHHH
T ss_pred HHhccccccchhHHHHHHHHHHH
Confidence 54433555778999999987753
No 170
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.41 E-value=0.099 Score=44.16 Aligned_cols=43 Identities=9% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDF 983 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f 983 (997)
..-.|++|...+... ++.||||+||..|+... ....|| -+..+
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQNP--VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCSE--EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCcCCCchhcCe--eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 456899999988763 35899999999999765 235699 44444
No 171
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=90.28 E-value=18 Score=37.22 Aligned_cols=144 Identities=9% Similarity=0.028 Sum_probs=76.8
Q ss_pred CcceEEEEeC-CEEEEEEC--CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe--CCeEEEEccCCCcccc
Q 043572 225 DGVKTMVWLN-DSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDAHGQPVGG 299 (997)
Q Consensus 225 ~~~~~l~~~~-~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~ 299 (997)
..+..+.+.. +.++++.. .....+|. +|..... ........|.-..+..++.+.++. ++....++.+|....-
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~ 218 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEF 218 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEE
Confidence 3567888774 46888864 57888887 6765543 222222334444444445666665 3455557776664321
Q ss_pred ccc-cCCCCCeEEEeCc-EEEEE--ECCeEEEEecCCCceEEEEecCCCCC-CCceecccccCCCcEEEEE-cCCeEEEE
Q 043572 300 SLV-FRKSPDAVGELSM-YVVVL--RGGKMELYHKKSGICVQAVTFGGEGG-GQCIATDEECGAGKLLVVA-TPTKVICY 373 (997)
Q Consensus 300 ~i~-w~~~P~~i~~~~P-Yll~~--~~~~ieI~~~~~~~lvQ~i~~~~~~~-~~~i~~~~~~~~g~~~~v~-s~~~V~~l 373 (997)
.+. -...|..+++..- .+.+. ..+.|.+++. ++. +..+.++.... ...+. . ..|. ++++ +.+.|+++
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~-~---~~g~-l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGIC-F---DGET-IWFAMECDKIGKL 291 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEE-E---CSSC-EEEEETTTEEEEE
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEE-e---cCCC-EEEEecCCcEEEE
Confidence 111 1245677777633 44444 3578888887 453 44554443211 11111 1 1345 4455 57788888
Q ss_pred eecC
Q 043572 374 QKVP 377 (997)
Q Consensus 374 ~~~~ 377 (997)
.+..
T Consensus 292 ~~~~ 295 (299)
T 2z2n_A 292 TLIK 295 (299)
T ss_dssp EEC-
T ss_pred EcCc
Confidence 7643
No 172
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=90.28 E-value=20 Score=37.70 Aligned_cols=169 Identities=9% Similarity=-0.064 Sum_probs=87.9
Q ss_pred EEEEEC-ceEEEEEEeCCeEEEEEeEecCC-cceEEEEe-CCEEEEEECCcEEEEEecCCcceeeecCCCCCCCCceEEc
Q 043572 197 FAVIIG-KRLVLIELVNGSFVILKEIQCMD-GVKTMVWL-NDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 197 l~Va~k-kki~i~~~~~~~~~~~kei~~~~-~~~~l~~~-~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~ 273 (997)
+.|++. ..|..|... +... ..+..+. .+.++... ++.|++|+ .+...+| .+|...--+.........+ ..
T Consensus 150 l~vgt~~~~l~~~d~~-g~~~--~~~~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~--~~ 222 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-GTEK--WRFKTNDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRP--AI 222 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEE--EEEECSSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCC--EE
T ss_pred EEEEcCCCEEEEECCC-CCEe--EEEecCCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceece--EE
Confidence 666665 556565544 3222 2222333 34556564 56799999 9999999 6675544444332111111 12
Q ss_pred CCCCeEEEEeC-CeEEEEccCCCcccccccc-CCCCCeEEEe-CcEEEEEECC-eEEEEecCCCceEEEEecCCCCCCCc
Q 043572 274 SKEQKVLLLVD-NVGVFVDAHGQPVGGSLVF-RKSPDAVGEL-SMYVVVLRGG-KMELYHKKSGICVQAVTFGGEGGGQC 349 (997)
Q Consensus 274 ~~~~e~Ll~~~-~~g~fv~~~G~~~r~~i~w-~~~P~~i~~~-~PYll~~~~~-~ieI~~~~~~~lvQ~i~~~~~~~~~~ 349 (997)
..++.+.+++. +....++.+|..... ..- ...+..+++. .-.|.+.+.+ .|..++. ++..+....++.... ..
T Consensus 223 ~~~g~l~v~t~~~gl~~~~~~g~~~~~-~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~-~~ 299 (330)
T 3hxj_A 223 SEDGTIYVTSLDGHLYAINPDGTEKWR-FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWII-AT 299 (330)
T ss_dssp CTTSCEEEEETTTEEEEECTTSCEEEE-EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCC-SC
T ss_pred CCCCeEEEEcCCCeEEEECCCCCEeEE-eeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccc-cc
Confidence 33446667764 444445766664321 110 1123334444 5566666654 7888885 788777777655322 22
Q ss_pred eecccccCCCcEEEEEcCCeEEEEeecCHH
Q 043572 350 IATDEECGAGKLLVVATPTKVICYQKVPSE 379 (997)
Q Consensus 350 i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~ 379 (997)
++.+ ..|. +++++.+-+..+.+.+..
T Consensus 300 ~~~d---~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 300 PVID---ENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CEEC---TTCC-EEEECTTSCEEEEEC---
T ss_pred eEEc---CCCE-EEEEcCCCeEEEEecccc
Confidence 2221 1234 667776666666655443
No 173
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.25 E-value=0.12 Score=42.61 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=35.3
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC--cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+.. ++...||||.||..|+.... ...|| -...+...
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4566799999988875 44456999999999997642 45699 44455443
No 174
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=90.11 E-value=0.11 Score=46.65 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=34.8
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKK 985 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~ 985 (997)
+.+.-.|++|...+.. ++...||||.||..|+... ....|| -+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3467789999888765 4545699999999999765 235699 4445443
No 175
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=89.96 E-value=0.13 Score=42.69 Aligned_cols=43 Identities=30% Similarity=0.450 Sum_probs=32.2
Q ss_pred EcCCCcCccccCccCCccEEEcC-CCeEEEeccccccC----cccCCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQG----ESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~~----~~~~~t~~ 981 (997)
+.++-.|++|...+... ++.| |||.||..|+.... ...||.++
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr 59 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLESDEHTCPTCH 59 (74)
T ss_dssp SCGGGSCSSSCCCCTTC--EECSSSCCEECTTHHHHHHHHSSSSCCSSSC
T ss_pred CCCCCCCcCCChHHhCC--eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCC
Confidence 45667999998888753 3478 99999999998753 24799443
No 176
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=89.93 E-value=0.11 Score=47.29 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~t~~ 981 (997)
++-.|++|...+...+ +.||||.||..|+.... ...||.++
T Consensus 14 ~~~~C~iC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr 57 (115)
T 3l11_A 14 SECQCGICMEILVEPV--TLPCNHTLCKPCFQSTVEKASLCCPFCR 57 (115)
T ss_dssp HHHBCTTTCSBCSSCE--ECTTSCEECHHHHCCCCCTTTSBCTTTC
T ss_pred CCCCCccCCcccCcee--EcCCCCHHhHHHHHHHHhHCcCCCCCCC
Confidence 4568999998887543 34999999999998763 34799444
No 177
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.92 E-value=0.096 Score=40.76 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=31.6
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccCcccCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRD 982 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~t~~~ 982 (997)
+.-.|++|...+... ++.||||.|+..|+... ...||.++.
T Consensus 5 ~~~~C~IC~~~~~~p--~~l~CgH~fC~~Ci~~~-~~~CP~Cr~ 45 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP--KLLPCLHTLCSGCLEAS-GMQCPICQA 45 (56)
T ss_dssp CCSSCSSSCSSCBCC--SCSTTSCCSBTTTCSSS-SSSCSSCCS
T ss_pred cCCCceEeCCccCCe--EEcCCCCcccHHHHccC-CCCCCcCCc
Confidence 456899999888764 35799999999999874 456995543
No 178
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=89.82 E-value=24 Score=37.87 Aligned_cols=142 Identities=12% Similarity=0.076 Sum_probs=78.6
Q ss_pred EEEEE--CceEEEEEEeCCe-------EEEE---EeEe--cCCcceEEEEeC--CEEEEEE--CCcEEEEEecCCcceee
Q 043572 197 FAVII--GKRLVLIELVNGS-------FVIL---KEIQ--CMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVTGQSGVI 258 (997)
Q Consensus 197 l~Va~--kkki~i~~~~~~~-------~~~~---kei~--~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~g~~~~l 258 (997)
++++. ..++.+|.+.... +... ..+. ....+..++|.. ..++++. .+...++|+.+|....+
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 44444 4678888887542 3322 2222 234578899884 3577776 45788999987765444
Q ss_pred ecCC---CCCCCCceEEcCCCCeEEEE-e-C--CeEEE--Ec-cCCCcccc-ccccCCCCCeEEEe--CcEEEEEE--CC
Q 043572 259 FTLP---DVSCPPMLKLLSKEQKVLLL-V-D--NVGVF--VD-AHGQPVGG-SLVFRKSPDAVGEL--SMYVVVLR--GG 323 (997)
Q Consensus 259 ~~~~---~~~~~p~i~~~~~~~e~Ll~-~-~--~~g~f--v~-~~G~~~r~-~i~w~~~P~~i~~~--~PYll~~~--~~ 323 (997)
.... .....|.-..+..++.+|.+ . + +.... ++ ..|....- .+.-...|..+++. .-||++.. .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence 2221 11123434445445566644 2 2 33333 33 24553321 22224578888886 34787765 47
Q ss_pred eEEEEec--CCCceEEE
Q 043572 324 KMELYHK--KSGICVQA 338 (997)
Q Consensus 324 ~ieI~~~--~~~~lvQ~ 338 (997)
.|.|+.+ .++.+.+.
T Consensus 329 ~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 329 VIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEEECTTTCCEEEC
T ss_pred CEEEEEEECCCCcEeec
Confidence 8888654 46766543
No 179
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=89.64 E-value=0.12 Score=47.79 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=33.8
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKK 985 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~ 985 (997)
.+.-.|++|...+...+ ..||||.||..|+... ....|| -+..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPI--TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEE--ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcE--EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34568999998887543 3599999999999764 233799 5566655
No 180
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=89.59 E-value=0.22 Score=48.92 Aligned_cols=55 Identities=15% Similarity=0.016 Sum_probs=41.7
Q ss_pred cEEEcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCccccC
Q 043572 934 HVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 934 ~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~~~~ 990 (997)
...+.+.-.|++|+..+...+. .||||+|-..|..... ...|| |+..|...-++|
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~--~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCI--TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred ccCCcHhhcccCccccCCCCeE--CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 3456788899999988876443 4999999999987642 23599 999997766554
No 181
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=89.42 E-value=0.09 Score=46.54 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=39.4
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccccCCCc
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVLIKPGW 993 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~~~~~~ 993 (997)
.+.-.|++|...+.. ++.+.||||.||..|+... ....|| -...|....+.+.+|
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHH
Confidence 355689999998875 4444899999999999865 225799 455666655665554
No 182
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=89.25 E-value=0.077 Score=48.24 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=1.0
Q ss_pred CCCcCccccCccCCc----------------cEEEcCCCeEEEecccccc--CcccCCCC
Q 043572 939 DESLCDSCHARLGTK----------------LFAMYPDDTIVCYKCYRRQ--GESTSITG 980 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~----------------~f~v~p~g~~~H~~C~~~~--~~~~~~t~ 980 (997)
+...|++|...+... .++.-||||+||..|+..- ....||.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~C 106 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106 (117)
T ss_dssp CC----------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCC
Confidence 457899999888531 2334589999999999873 34679944
No 183
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=89.15 E-value=27 Score=37.62 Aligned_cols=192 Identities=13% Similarity=0.030 Sum_probs=104.5
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTG 166 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (997)
+..+|..+..-|+...+.+ -+++.+.+|++........ ....|+..++...
T Consensus 18 h~~~V~~v~fs~dg~~la~-g~~~~~~iw~~~~~~~~~~-~~~~~~~~~~~~~--------------------------- 68 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLIL-STLKSFEIYNVHPVAHIMS-QEMRHLSKVRMLH--------------------------- 68 (355)
T ss_dssp -CCCCCEEEECTTSSEEEE-ECSSEEEEEEETTEEEEEE-EECSCCCEEEECT---------------------------
T ss_pred CCCceEEEEECCCCCEEEE-EcCCEEEEEecCCcceeee-eecCCeEEEEEcC---------------------------
Confidence 5678999999998885544 6677788998765432211 1111222222111
Q ss_pred chhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEECCcE
Q 043572 167 QRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGY 245 (997)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y 245 (997)
++....+++. .++|.+|....++ .+.++..+..+.++.+..+.++++..+..
T Consensus 69 -------------------------~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~~~~~~v~~v~~~~~~~~~~~~~~i 121 (355)
T 3vu4_A 69 -------------------------RTNYVAFVTGVKEVVHIWDDVKKQ--DVSRIKVDAPVKDLFLSREFIVVSYGDVI 121 (355)
T ss_dssp -------------------------TSSEEEEECSSTTEEEEEETTTTE--EEEEEECSSCEEEEEECSSEEEEEETTEE
T ss_pred -------------------------CCCEEEEEECCccEEEEEECCCCc--EEEEEECCCceEEEEEcCCEEEEEEcCEE
Confidence 0111122222 3477887766553 34456677889999999999999999999
Q ss_pred EEEEecCC-cceeeecCCCCCCCCceEEcCCCCeEEEE---eCCeEEEEccC-CCcc---------------ccccccC-
Q 043572 246 SLFSCVTG-QSGVIFTLPDVSCPPMLKLLSKEQKVLLL---VDNVGVFVDAH-GQPV---------------GGSLVFR- 304 (997)
Q Consensus 246 ~lidl~~g-~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~---~~~~g~fv~~~-G~~~---------------r~~i~w~- 304 (997)
.++|+.++ .....+.. +..+..+.. ..+.++ .++...+.|.. |... ...+.-.
T Consensus 122 ~i~d~~~~~~~~~~~~~-----~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~ 195 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIR-----FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT 195 (355)
T ss_dssp EEEESSTTCCBSSCCEE-----EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS
T ss_pred EEEECCCCceeeEEecc-----CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC
Confidence 99999876 22111111 111222222 233332 22334444433 2100 0011111
Q ss_pred CCCCeEEEe--CcEEEEEE-CCe-EEEEecCCCceEEEEe
Q 043572 305 KSPDAVGEL--SMYVVVLR-GGK-MELYHKKSGICVQAVT 340 (997)
Q Consensus 305 ~~P~~i~~~--~PYll~~~-~~~-ieI~~~~~~~lvQ~i~ 340 (997)
.....+++. ..|++.-. ++. |.|.++.++..++++.
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 112334443 34676665 455 9999999999999987
No 184
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.79 E-value=0.073 Score=42.98 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=34.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+...+. .||||+||..|+.... ...|| -+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3466789999988876444 6999999999998642 34699 55555443
No 185
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=88.53 E-value=0.17 Score=44.53 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=33.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKK 985 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~ 985 (997)
+.-.|++|...+.. +....||||.||..|.... ....|| -+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45689999988875 3434589999999999764 235699 4444543
No 186
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=88.48 E-value=31 Score=37.41 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=42.9
Q ss_pred EEeecCCeEEEEc--CCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEE
Q 043572 36 PISDCQVLIYIGT--QSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLF 113 (997)
Q Consensus 36 ci~~~~~~l~iGT--~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~ 113 (997)
|+.-.|+.|++|| .+|.+..+....... ...++ ....|..+..-|+.. .|++-+++.+.
T Consensus 140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~--------------~~~~~----~~~~V~~v~fspdg~-~l~s~s~~~~~ 200 (365)
T 4h5i_A 140 YISREGTVAAIASSKVPAIMRIIDPSDLTE--------------KFEIE----TRGEVKDLHFSTDGK-VVAYITGSSLE 200 (365)
T ss_dssp EECTTSSCEEEEESCSSCEEEEEETTTTEE--------------EEEEE----CSSCCCEEEECTTSS-EEEEECSSCEE
T ss_pred EEcCCCCEEEEEECCCCCEEEEeECCCCcE--------------EEEeC----CCCceEEEEEccCCc-eEEeccceeEE
Confidence 3334467788876 579998887764321 11111 445799999889888 45547888888
Q ss_pred EeecCc
Q 043572 114 LTDSLL 119 (997)
Q Consensus 114 ~~~l~~ 119 (997)
+|....
T Consensus 201 ~~~~~~ 206 (365)
T 4h5i_A 201 VISTVT 206 (365)
T ss_dssp EEETTT
T ss_pred EEEecc
Confidence 887654
No 187
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=88.37 E-value=52 Score=39.89 Aligned_cols=179 Identities=9% Similarity=0.071 Sum_probs=92.2
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEeEe---c-CCcceEEEEeC-CEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKEIQ---C-MDGVKTMVWLN-DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~kei~---~-~~~~~~l~~~~-~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
.+.|++...|..|....+.|....... + ...+.++.... +.|.+|+. .+...+|..++.........+. ....
T Consensus 462 ~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l-~~~~ 540 (781)
T 3v9f_A 462 KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGF-CSNT 540 (781)
T ss_dssp EEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTC-SCSC
T ss_pred CEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCC-CCCe
Confidence 578888877777766555565543221 1 23567776654 56999997 7888899876654443221111 1122
Q ss_pred eEEc--CCCCeEEEEeCCeEE-E-EccCCCcccc-ccc--cC-CCCCeEEEe-CcEEEEEECCeEEEEecCCCceEEEEe
Q 043572 270 LKLL--SKEQKVLLLVDNVGV-F-VDAHGQPVGG-SLV--FR-KSPDAVGEL-SMYVVVLRGGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 270 i~~~--~~~~e~Ll~~~~~g~-f-v~~~G~~~r~-~i~--w~-~~P~~i~~~-~PYll~~~~~~ieI~~~~~~~lvQ~i~ 340 (997)
|..+ ..++.+.++++ .|+ + +|..+...+. +.. .+ ....++..+ .-.|.+-+.+.|..++..++. ++...
T Consensus 541 i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~-~~~~~ 618 (781)
T 3v9f_A 541 INQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKC-FYTYD 618 (781)
T ss_dssp EEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTE-EEEEC
T ss_pred eEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCc-eEEec
Confidence 3333 33457888877 455 3 4543332111 100 11 123344444 335555567778777776643 33333
Q ss_pred cCCCCC-CCcee-cccccCCCcEEEEEcCCeEEEEeecCH
Q 043572 341 FGGEGG-GQCIA-TDEECGAGKLLVVATPTKVICYQKVPS 378 (997)
Q Consensus 341 ~~~~~~-~~~i~-~~~~~~~g~~~~v~s~~~V~~l~~~~~ 378 (997)
...... ..+.. +.+...+|. +++++..-+..+.|..+
T Consensus 619 ~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~~f~p~~~ 657 (781)
T 3v9f_A 619 HSNNIPQGSFISGCVTKDHNGL-IYFGSINGLCFFNPDIA 657 (781)
T ss_dssp GGGTCCSSCEEEEEEEECTTSC-EEEEETTEEEEECSCCG
T ss_pred ccCCccccccccCceEECCCCE-EEEECCCceEEEChhhc
Confidence 222111 11110 111112344 67788888888877544
No 188
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.06 E-value=0.12 Score=43.89 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=35.0
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC--------cccCCC-CCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--------ESTSIT-GRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--------~~~~~t-~~~f~~~ 986 (997)
+.+.-.|++|...+.... +.||||.||..|+.... ...||. ...+...
T Consensus 16 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcce--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 456789999998887643 58999999999998631 456994 4444443
No 189
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=88.05 E-value=0.24 Score=43.72 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=39.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~ 990 (997)
+.+.-.|++|+..+...+ +-||||.|...|.... ....|| |++.+...-+++
T Consensus 26 ~p~~~~CpI~~~~m~dPV--~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPV--RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp CSTTTBCTTTCSBCSSEE--EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEE
T ss_pred CcHhhCCcCccCcccCCe--ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceE
Confidence 456789999998887643 3689999999998765 245799 999987765554
No 190
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=87.71 E-value=20 Score=42.74 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=24.6
Q ss_pred CcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 89 SPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 89 ~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
.+|..+.+-|+ +.+++ -+|+++++|++..
T Consensus 82 ~~v~~~~~spd-~~~~~-~~~~~i~~~d~~~ 110 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVL-FTQGGLVGFDMLA 110 (706)
T ss_dssp CCCEEEEETTT-TEEEE-EETTEEEEEETTT
T ss_pred cCceeEEECCC-CeEEE-EECCEEEEEECCC
Confidence 57999999999 87887 6889999999865
No 191
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=87.50 E-value=17 Score=37.81 Aligned_cols=126 Identities=12% Similarity=-0.040 Sum_probs=85.7
Q ss_pred EEEEEeEecCCcc--eEEEEeCCEEEEEECC--cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE-eCCeEEE
Q 043572 215 FVILKEIQCMDGV--KTMVWLNDSIIVGTVN--GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL-VDNVGVF 289 (997)
Q Consensus 215 ~~~~kei~~~~~~--~~l~~~~~~l~vg~~~--~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~-~~~~g~f 289 (997)
...++++.....+ +.+.+.++.|++++.. ....+|++||++..-+ .+.....--+...+ +.-|.+. .++.+..
T Consensus 43 ~~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 43 AHIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEE
T ss_pred eEEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEE
Confidence 3456777665555 7899999999999775 5888999999875544 43211111133332 3234443 4778888
Q ss_pred EccC-CCccccccccCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 290 VDAH-GQPVGGSLVFRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 290 v~~~-G~~~r~~i~w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+|.. ++.. +++..+..+..++...-.+++-. .+.|.+++..+++.+.+|....
T Consensus 121 ~D~~Tl~~~-~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 121 WSGMPPQRE-RTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp EETTTTEEE-EEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EECCcCcEE-EEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 9964 4443 35666666778888887777654 6789999999999999998754
No 192
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=87.50 E-value=32 Score=36.50 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=47.4
Q ss_pred EEEEE--CceEEEEEEeC--CeEEEEEeEec-C------CcceEEEEeC--CEEEEEEC--CcEEEEEec-CCcceeeec
Q 043572 197 FAVII--GKRLVLIELVN--GSFVILKEIQC-M------DGVKTMVWLN--DSIIVGTV--NGYSLFSCV-TGQSGVIFT 260 (997)
Q Consensus 197 l~Va~--kkki~i~~~~~--~~~~~~kei~~-~------~~~~~l~~~~--~~l~vg~~--~~y~lidl~-~g~~~~l~~ 260 (997)
++|+. ...+.+|.+.. +.+.....+.. + ..+..++|.. ..|+++.. +...++|+. +|....+-.
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence 44443 45788888874 46665555432 2 2367788873 45777653 568899986 333333322
Q ss_pred CCCCCCCCceEEcCCCCeEEEE
Q 043572 261 LPDVSCPPMLKLLSKEQKVLLL 282 (997)
Q Consensus 261 ~~~~~~~p~i~~~~~~~e~Ll~ 282 (997)
....+..|.-..++.++.+|++
T Consensus 281 ~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 281 ISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EECSSSCCCEEEECTTSSEEEE
T ss_pred EecCCCCcCeEEECCCCCEEEE
Confidence 2222234544455545555544
No 193
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=87.31 E-value=3 Score=47.23 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=48.8
Q ss_pred eeeEEeec--CCeEEE----EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc-CcEEE
Q 043572 33 SISPISDC--QVLIYI----GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV-GKVLL 105 (997)
Q Consensus 33 ~I~ci~~~--~~~l~i----GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~-~~lLv 105 (997)
.|+|++.. ++.|++ |+.+|.+..|.+........... .. .......+ -...+|..+..-|.. +.++.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~--~~-~~~~~~~~---~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK--RP-FAYHKLLK---DAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC--CC-SEEEECCC---SGGGSEEEEEECSSCTTEEEE
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc--ce-eeeeeccC---CCCCceEEEEECCCCCCEEEE
Confidence 58888754 567884 78899999998854311000000 00 00011111 135689999999984 44444
Q ss_pred EecCCeEEEeecCcc
Q 043572 106 LFCDQCLFLTDSLLT 120 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l 120 (997)
+-.||+|++|++..-
T Consensus 168 ~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 168 CLADGSIAVLQVTET 182 (434)
T ss_dssp EETTSCEEEEEESSS
T ss_pred EECCCeEEEEEcCCC
Confidence 456899999998764
No 194
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=87.16 E-value=0.21 Score=48.66 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=31.6
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccC---cccCCCCC-CC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSITGR-DF 983 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~t~~-~f 983 (997)
-.|++|...+.. ++..-||||.||..|+.... ...||.|+ .+
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999988875 45456999999999997652 45699544 44
No 195
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=86.99 E-value=53 Score=38.44 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=129.4
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. |+.|..|+.||.+..+....... .. ... ++ ....+|..+..-|+..++++ -+
T Consensus 59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~----------~~-~~~-~~---~~~~~v~~v~fs~dg~~l~~-~~ 122 (611)
T 1nr0_A 59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH----------IL-KTT-IP---VFSGPVKDISWDSESKRIAA-VG 122 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC----------CE-EEE-EE---CSSSCEEEEEECTTSCEEEE-EE
T ss_pred CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc----------ee-eEe-ec---ccCCceEEEEECCCCCEEEE-EE
Confidence 3568888754 67899999999999998753221 00 011 11 24568999999998885555 44
Q ss_pred C-----CeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 109 D-----QCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 109 d-----~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+ +++.+|+... +...+ .-...|..++..+
T Consensus 123 ~~~~~~~~v~~wd~~~--~~~~l~gh~~~v~~v~f~p------------------------------------------- 157 (611)
T 1nr0_A 123 EGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKP------------------------------------------- 157 (611)
T ss_dssp CCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECS-------------------------------------------
T ss_pred CCCCceeEEEEeeCCC--CcceecCCCCCceEEEECC-------------------------------------------
Confidence 3 2677776432 11111 1122344444332
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEE-CCcEEEEEecCCccee
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGV 257 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~ 257 (997)
++...++.+. .+.|.+|..... +..+.+.- .+.|.+++|.. ..|+.|. .+...+.|+.+|+...
T Consensus 158 ---------~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 158 ---------SRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp ---------SSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ---------CCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 1112344444 345777765433 33333322 34678999984 4466664 4578899998887655
Q ss_pred eecCC-----CCCCCCceEEcCCCCeEEEE--eCCeEEEEccC-CCccccccccC----CCCCeEEEeCcEEEEEE-CCe
Q 043572 258 IFTLP-----DVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAH-GQPVGGSLVFR----KSPDAVGELSMYVVVLR-GGK 324 (997)
Q Consensus 258 l~~~~-----~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~-G~~~r~~i~w~----~~P~~i~~~~PYll~~~-~~~ 324 (997)
.+... ...-......+.+++.+|++ .|+...+.|.. |...+ ++.-. .....+.+...++++.. ++.
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee-eecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 55321 11111122334434455554 35566666653 43322 12111 12234455566777665 578
Q ss_pred EEEEecCCCceEEEE
Q 043572 325 MELYHKKSGICVQAV 339 (997)
Q Consensus 325 ieI~~~~~~~lvQ~i 339 (997)
+.+.+..++..++.+
T Consensus 306 i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 306 INFVNPELGSIDQVR 320 (611)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCcceEE
Confidence 999998888766665
No 196
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=86.86 E-value=38 Score=37.48 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=44.5
Q ss_pred eeeeEEeec--CCeEEEEcCCc---eEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 32 LSISPISDC--QVLIYIGTQSG---SLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G---~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
..+.+++.. |+.|+.++.++ .|+.|.+..... ..+.. ....+..+..-|+...++++
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------------~~l~~----~~~~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------RQVAS----FPRHNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------------EEEEC----CSSCEEEEEECTTSSEEEEE
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--------------EEeec----CCCcccCEEEcCCCCEEEEE
Confidence 466776653 56788887765 788777764321 11111 34478899989998867753
Q ss_pred ec-CC--eEEEeecCc
Q 043572 107 FC-DQ--CLFLTDSLL 119 (997)
Q Consensus 107 l~-d~--~l~~~~l~~ 119 (997)
.+ |+ .|++|++..
T Consensus 241 ~~~~g~~~i~~~d~~~ 256 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLAS 256 (415)
T ss_dssp ECTTSSCEEEEEETTT
T ss_pred EecCCCceEEEEECCC
Confidence 44 33 588888765
No 197
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=86.73 E-value=29 Score=36.41 Aligned_cols=166 Identities=11% Similarity=0.018 Sum_probs=82.5
Q ss_pred EEEEE-CceEEEEEEeCCeEEEEEeEecCCc-ceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEE
Q 043572 197 FAVII-GKRLVLIELVNGSFVILKEIQCMDG-VKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKL 272 (997)
Q Consensus 197 l~Va~-kkki~i~~~~~~~~~~~kei~~~~~-~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~ 272 (997)
+.|++ ...+..|... +... .....+.. +.++... ++.|++|+. .+...+|.. |.....+..+......+ .
T Consensus 110 l~v~t~~~~l~~~d~~-g~~~--~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~--~ 183 (330)
T 3hxj_A 110 LYVTSMDGHLYAINTD-GTEK--WRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA--S 183 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEE--EEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC--E
T ss_pred EEEEecCCEEEEEcCC-CCEE--EEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeee--E
Confidence 55665 3445555443 2221 12222332 3455555 567999986 688889987 66544444432111111 1
Q ss_pred cCCCCeEEEEeCCeEEEEccCCCccccccccCCCCCeEEEeCc-EEEEEE-CCeEEEEecCCCceEEEEecCCCCCCCce
Q 043572 273 LSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSM-YVVVLR-GGKMELYHKKSGICVQAVTFGGEGGGQCI 350 (997)
Q Consensus 273 ~~~~~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P-Yll~~~-~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i 350 (997)
...++.+.+++ +-...+|.+|......-.-...+..++...- .|.+.+ .+.|..++ .++..+..........+. +
T Consensus 184 ~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~-~ 260 (330)
T 3hxj_A 184 IGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESS-P 260 (330)
T ss_dssp ECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSC-C
T ss_pred EcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCcccc-c
Confidence 22344677777 5455567666543110000122344455433 566555 46777775 456666666554432111 2
Q ss_pred ecccccCCCcEEEEEcCC-eEEEEee
Q 043572 351 ATDEECGAGKLLVVATPT-KVICYQK 375 (997)
Q Consensus 351 ~~~~~~~~g~~~~v~s~~-~V~~l~~ 375 (997)
+.+ ..|. +++++.. .|+++.+
T Consensus 261 ~~~---~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 261 VIG---NTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEC---TTSC-EEEECTTCEEEEECT
T ss_pred eEc---CCCe-EEEecCCCCEEEECC
Confidence 211 1234 5666655 7888753
No 198
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=86.66 E-value=0.11 Score=43.52 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=36.0
Q ss_pred EcCCCcCccccCccCCccEEEcC--CCeEEEeccccccC---cccCC-CCCCCCCcc
Q 043572 937 INDESLCDSCHARLGTKLFAMYP--DDTIVCYKCYRRQG---ESTSI-TGRDFKKDV 987 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p--~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~ 987 (997)
+.++..|++|-.++.....+++| |||.|+..|+.... ...|| -.+.|...+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45678999999988644334466 99999999987652 45699 444555444
No 199
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=86.42 E-value=0.26 Score=42.06 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=39.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~ 990 (997)
+.+.-.|++|+..+...+ +-||||.|...|.... ....|| |++.+...-+++
T Consensus 11 ~p~~~~CpI~~~~m~dPV--~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPV--RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CCTTTBCTTTCSBCSSEE--ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CchheECcccCchhcCCe--ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 456789999998887643 4789999999998765 245799 999987765554
No 200
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.38 E-value=0.26 Score=44.89 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccCcccCC-CCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSI-TGRDF 983 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~-t~~~f 983 (997)
+.-.|++|...+... +...||||.|+..|+.......|| -+..+
T Consensus 21 ~~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred hCCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 457899999888653 333499999999999987666799 44444
No 201
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=86.12 E-value=11 Score=39.28 Aligned_cols=125 Identities=11% Similarity=0.078 Sum_probs=86.0
Q ss_pred EEEEEeEecCCcc--eEEEEeCCEEEEEECC----cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCe
Q 043572 215 FVILKEIQCMDGV--KTMVWLNDSIIVGTVN----GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNV 286 (997)
Q Consensus 215 ~~~~kei~~~~~~--~~l~~~~~~l~vg~~~----~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~ 286 (997)
+..++++.....+ +.+.|.++.|++++.. ....+|+.||++..-++.+.....--+...+ + .+.+. .++.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~-~ly~ltw~~~~ 108 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-D-KIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-T-EEEEEESSSSE
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-C-EEEEEEeeCCE
Confidence 4566777666666 8899998899999753 6889999999887666654311111133332 3 54444 3788
Q ss_pred EEEEccC-CCccccccccCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 287 GVFVDAH-GQPVGGSLVFRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 287 g~fv~~~-G~~~r~~i~w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
+..+|.. ++.. +++.....+..++...-.+++-. .+.|.+.+..+.+.+.+|+..
T Consensus 109 v~v~D~~t~~~~-~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 109 GFVWNIRNLRQV-RSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp EEEEETTTCCEE-EEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred EEEEECccCcEE-EEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence 8889974 4443 36666667778887776666543 567999999999999999884
No 202
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=85.98 E-value=34 Score=41.45 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=49.9
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CCEEEEEECCcEEEEEecCCcceeeecCCC--CCC-CCceE
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL-NDSIIVGTVNGYSLFSCVTGQSGVIFTLPD--VSC-PPMLK 271 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~~l~vg~~~~y~lidl~~g~~~~l~~~~~--~~~-~p~i~ 271 (997)
.|.|++...+..|....+.+.....+. ...|.++... ++.|.+|+..+..++|..++.......... .+. ...|.
T Consensus 204 ~lWigt~~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 282 (758)
T 3ott_A 204 CVWIGTEGYLFQYFPSTGQIKQTEAFH-NNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIW 282 (758)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEE-EEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEE
T ss_pred EEEEEECCCCeEEcCCCCeEEeccCCC-CCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEE
Confidence 366777555555554445565544332 2346777665 456999999999999987665544432221 111 12343
Q ss_pred Ec--CCCCeEEEEeCC
Q 043572 272 LL--SKEQKVLLLVDN 285 (997)
Q Consensus 272 ~~--~~~~e~Ll~~~~ 285 (997)
.+ +.++.+-++++.
T Consensus 283 ~i~~D~~g~lWiGT~~ 298 (758)
T 3ott_A 283 NIFADQEHNIWLGTDY 298 (758)
T ss_dssp EEEECTTCCEEEEESS
T ss_pred EEEEcCCCCEEEEeCC
Confidence 33 334467777654
No 203
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=85.51 E-value=73 Score=38.60 Aligned_cols=175 Identities=13% Similarity=0.079 Sum_probs=81.1
Q ss_pred EEEEEE-CceEEEEEEeCCeEEEEEe-EecC-CcceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCce
Q 043572 196 VFAVII-GKRLVLIELVNGSFVILKE-IQCM-DGVKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPML 270 (997)
Q Consensus 196 ~l~Va~-kkki~i~~~~~~~~~~~ke-i~~~-~~~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i 270 (997)
.+.|++ ...|..|....+.+..... -.++ ..|.++... ++.|.+|+. .+...+|..++........ ... ...+
T Consensus 375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~-~~~-~~~v 452 (781)
T 3v9f_A 375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE-KNE-LLDV 452 (781)
T ss_dssp CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST-TTC-CCCE
T ss_pred CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC-CCC-CCeE
Confidence 367777 4556665543333333211 1122 356777665 467999986 7889999877765544321 111 1123
Q ss_pred EEc--CCCCeEEEEeCCeEEE-EccCC-Ccccc-ccc----cCCCCCeEEEeC-cEEEEEEC-CeEEEEecCCCceEEEE
Q 043572 271 KLL--SKEQKVLLLVDNVGVF-VDAHG-QPVGG-SLV----FRKSPDAVGELS-MYVVVLRG-GKMELYHKKSGICVQAV 339 (997)
Q Consensus 271 ~~~--~~~~e~Ll~~~~~g~f-v~~~G-~~~r~-~i~----w~~~P~~i~~~~-PYll~~~~-~~ieI~~~~~~~lvQ~i 339 (997)
..+ ..++.+.+++.+ |++ ++..+ ...+- ... ....+..+..+. -.|.+-+. +.|..++..++.. +.+
T Consensus 453 ~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~ 530 (781)
T 3v9f_A 453 RVFYEDKNKKIWIGTHA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKF 530 (781)
T ss_dssp EEEEECTTSEEEEEETT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEE
T ss_pred EEEEECCCCCEEEEECC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEc
Confidence 332 334578888774 554 56543 32211 100 011122333322 12333333 5677777665533 333
Q ss_pred ecCCCCCCCceecccccCCCcEEEEEcCCeE-EEEee
Q 043572 340 TFGGEGGGQCIATDEECGAGKLLVVATPTKV-ICYQK 375 (997)
Q Consensus 340 ~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V-~~l~~ 375 (997)
..........+.+.+....|. +++++...+ +++.+
T Consensus 531 ~~~~~l~~~~i~~i~~d~~g~-lWi~T~~Glv~~~d~ 566 (781)
T 3v9f_A 531 NQYEGFCSNTINQIYRSSKGQ-MWLATGEGLVCFPSA 566 (781)
T ss_dssp CTTTTCSCSCEEEEEECTTSC-EEEEETTEEEEESCT
T ss_pred cCCCCCCCCeeEEEEECCCCC-EEEEECCCceEEECC
Confidence 322211112222222122334 677776666 66544
No 204
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=85.16 E-value=0.25 Score=47.29 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKD 986 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~ 986 (997)
+.-.|++|...+...+ +.||||.||..|+.... ...|| ....+...
T Consensus 77 ~~~~C~IC~~~~~~pv--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV--TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE--ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCE--EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4468999998887543 37999999999998652 23699 66666655
No 205
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=85.06 E-value=0.41 Score=42.02 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=40.1
Q ss_pred EcCCCcCccccCccCCccEEEcCCC-eEEEeccccccC--cccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDD-TIVCYKCYRRQG--ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g-~~~H~~C~~~~~--~~~~~-t~~~f~~~~~~~ 990 (997)
+.++-.|++|+..+...+ +-||| |.|...|..... ...|| |++.+...-+++
T Consensus 19 ~p~~~~CpI~~~~m~dPV--~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPV--VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CCTTTBCTTTCSBCSSEE--ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred CcHhcCCcCccccccCCe--ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 456789999998887643 47999 999999987652 45699 999988765554
No 206
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.88 E-value=0.24 Score=44.63 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccccCc-----ccCC-CCCCCCCcc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGE-----STSI-TGRDFKKDV 987 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~-----~~~~-t~~~f~~~~ 987 (997)
...|++|...+..... .||||.||..|+..... ..|| -+..+....
T Consensus 21 ~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSCCB--CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCeEE--CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 3579999988865433 69999999999986522 3699 444454433
No 207
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=84.63 E-value=0.33 Score=38.46 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=38.2
Q ss_pred CcCccccCccCCccEEEc-CCCeEEEeccccccC--cccCC-CCCCCCCccccC
Q 043572 941 SLCDSCHARLGTKLFAMY-PDDTIVCYKCYRRQG--ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~-p~g~~~H~~C~~~~~--~~~~~-t~~~f~~~~~~~ 990 (997)
-.|++|++...+. ++- ++|++|-..|..+.. ...|| ||+.+...-+++
T Consensus 4 ~~CpIs~~~m~dP--V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRP--VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSE--EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCC--EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 4799999999864 345 899999999998752 34599 999998877665
No 208
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=84.48 E-value=27 Score=39.14 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=35.9
Q ss_pred EEE-EECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-cEEEEEecCCcce
Q 043572 197 FAV-IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-GYSLFSCVTGQSG 256 (997)
Q Consensus 197 l~V-a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-~y~lidl~~g~~~ 256 (997)
++. ...+.|.+|....+.. ..........+.+++|. |..|++|... ...++|++ +...
T Consensus 165 las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp EEEEETTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred EEEEECCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 443 3455688888876522 11222234578999998 4568888654 68888886 5433
No 209
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=84.05 E-value=53 Score=35.84 Aligned_cols=70 Identities=14% Similarity=0.025 Sum_probs=43.3
Q ss_pred cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc-------cCcEEEEe-cCCe
Q 043572 40 CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD-------VGKVLLLF-CDQC 111 (997)
Q Consensus 40 ~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~-------~~~lLv~l-~d~~ 111 (997)
.++.|.-|+.||.+..+......... .+....+. -+..+|..+..-|. .+++|++- .|++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~---------~~~~~~~~---gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIIT---------QHVLGGKS---GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEE---------EEEECTTT---SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccce---------eeeecccC---CCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 34568889999999999887543110 00111111 14568999998772 23355533 4789
Q ss_pred EEEeecCccc
Q 043572 112 LFLTDSLLTQ 121 (997)
Q Consensus 112 l~~~~l~~l~ 121 (997)
+++|++..-.
T Consensus 168 v~~Wd~~~~~ 177 (393)
T 4gq1_A 168 LIIWRLTDEG 177 (393)
T ss_dssp EEEEEEETTE
T ss_pred EEEEECCCCc
Confidence 9999986543
No 210
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=83.95 E-value=0.27 Score=42.56 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=34.4
Q ss_pred EEcCCCcCccccCccCCccEEEcC-CCeEEEecccccc----CcccCC-CCCCC
Q 043572 936 QINDESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQ----GESTSI-TGRDF 983 (997)
Q Consensus 936 ~I~~~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~----~~~~~~-t~~~f 983 (997)
.+.+.-.|++|...+...+ ..| |||.|+..|+... ....|| .+..|
T Consensus 9 ~~~~~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAV--VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCE--ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCce--ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3567789999998887543 469 9999999999764 234799 55555
No 211
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=83.85 E-value=0.42 Score=52.73 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCCCCCC
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSITGRD 982 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~t~~~ 982 (997)
...|++|-..... -++.||||+||..|.... ....||.|+.
T Consensus 332 ~~~C~ICle~~~~--pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~ 375 (389)
T 2y1n_A 332 FQLCKICAENDKD--VKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375 (389)
T ss_dssp SSBCTTTSSSBCC--EEEETTCCEECHHHHHHHHHHTCSBCTTTCC
T ss_pred CCCCCccCcCCCC--eEEeCCCChhhHHHHHHHHhcCCCCCCCCCC
Confidence 4689999877754 456899999999999753 2467995553
No 212
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=83.60 E-value=69 Score=36.79 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.8
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
+..|+.+|.+.|++++|++++.+...
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45688899999999999999988664
No 213
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=83.34 E-value=60 Score=35.87 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCCcceEEEeecccCcEEEEecCC---eEEEeecCcc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQ---CLFLTDSLLT 120 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~---~l~~~~l~~l 120 (997)
+..+|..+..-|+.++++.+-.|+ .|++|++..-
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 456899999999988676633443 9999998653
No 214
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=83.29 E-value=0.18 Score=41.80 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.2
Q ss_pred CCCcCccccCccCCccEEEcCCCeE-EEeccccccCcccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQGESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~~~~~~t~~ 981 (997)
++..|.+|...+... +..||||. ++..|.... ..||.++
T Consensus 23 ~~~~C~iC~~~~~~~--~~~pCgH~~~C~~C~~~~--~~CP~Cr 62 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI--VFVPCGHLVTCKQCAEAV--DKCPMCY 62 (74)
T ss_dssp HHTBCTTTSSSBCCE--EEETTCCBCCCHHHHTTC--SBCTTTC
T ss_pred cCCCCCCCCCCCCCE--EEcCCCChhHHHHhhhcC--ccCCCcC
Confidence 345899999887653 34699999 999999876 5699544
No 215
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=83.03 E-value=0.39 Score=43.75 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=34.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~ 986 (997)
+.+.-.|++|...+... +..||||.||..|+.... ...|| -+..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA--VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe--EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 45667999999888764 346999999999997642 23799 55555444
No 216
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.69 E-value=0.36 Score=42.04 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=35.6
Q ss_pred CCCcCccccCccCCccEEEcC-CCeEEEeccccccC--------cccCC-CCCC---CCCccccC
Q 043572 939 DESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQG--------ESTSI-TGRD---FKKDVLIK 990 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~~--------~~~~~-t~~~---f~~~~~~~ 990 (997)
++-.|++|...+... + +-| |||+|...|+.... ...|| ||.. +....+++
T Consensus 6 ~~~~CPI~~~~~~dP-V-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP-V-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SCCBCTTTCSBCSSE-E-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred cEeECcCcCchhcCC-E-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 456899999888763 3 355 99999999987652 23799 8876 55544443
No 217
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=82.11 E-value=11 Score=43.88 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=50.0
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEE-eecccC-cEEE-Ee
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIF-VLDDVG-KVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~-vl~~~~-~lLv-~l 107 (997)
..|+|++.. ++.|+.|+.||.+..|.+..... +...++ .+..+|..|. ..+..+ .+|+ +-
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~-------------~~~~~~---~H~~~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV-------------PSFYDQ---VHDSYILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSS-------------CSEEEE---CSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC-------------ceEEee---cccccEEEEEEEcCCCCCeEEEEec
Confidence 578898853 56899999999999999874321 111111 2567899985 445543 4555 34
Q ss_pred cCCeEEEeecCccc
Q 043572 108 CDQCLFLTDSLLTQ 121 (997)
Q Consensus 108 ~d~~l~~~~l~~l~ 121 (997)
.|+++.+|++....
T Consensus 331 ~D~tvklWD~~~~~ 344 (524)
T 2j04_B 331 VDGYFYIFNPKDIA 344 (524)
T ss_dssp TTSEEEEECGGGHH
T ss_pred cCCeEEEEECCCCC
Confidence 58899999987644
No 218
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=82.05 E-value=64 Score=35.35 Aligned_cols=54 Identities=13% Similarity=-0.020 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
....++..|++++|+.+++......+.. .......|..++..++|++|+..|.+
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4467889999999999998764322211 23444567778889999999999876
No 219
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=82.01 E-value=83 Score=36.61 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=39.6
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC--CcEEEEEecCCcceeeecC
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV--NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~--~~y~lidl~~g~~~~l~~~ 261 (997)
++|..+ .+|.++.+.........++.....+..+.|.. ..++++.. +...++|+.++.....+++
T Consensus 312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 312 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 444444 34666555443333445555555566777773 45777753 6788899888876666665
No 220
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=81.71 E-value=47 Score=34.02 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=92.4
Q ss_pred EEEEEECc----eEEEEEEeCCeEEEEEeEecCCcc--eEEEEeCCEEEEEE--CCcEEEEEecCCcceeeecCCCCCCC
Q 043572 196 VFAVIIGK----RLVLIELVNGSFVILKEIQCMDGV--KTMVWLNDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 196 ~l~Va~kk----ki~i~~~~~~~~~~~kei~~~~~~--~~l~~~~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
++.+++.. +|..+....+ +..+++.++..+ -.++..++.|++++ .+.-.++|.+|++...-|+.+..
T Consensus 32 ~LyestG~~g~S~v~~vD~~tg--kv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~--- 106 (243)
T 3mbr_X 32 HLYESTGETGRSSVRKVDLETG--RILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE--- 106 (243)
T ss_dssp EEEEEECCTTSCEEEEEETTTC--CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC---
T ss_pred EEEEECCCCCCceEEEEECCCC--CEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC---
Confidence 46777665 5777766654 344566677665 56778899999997 56789999999888877887642
Q ss_pred CceEEcCCCCeEEEEe-CCeEEEEccCC-Ccccc-ccccCCC----CCeEEEeCcEEEEEE--CCeEEEEecCCCceEEE
Q 043572 268 PMLKLLSKEQKVLLLV-DNVGVFVDAHG-QPVGG-SLVFRKS----PDAVGELSMYVVVLR--GGKMELYHKKSGICVQA 338 (997)
Q Consensus 268 p~i~~~~~~~e~Ll~~-~~~g~fv~~~G-~~~r~-~i~w~~~----P~~i~~~~PYll~~~--~~~ieI~~~~~~~lvQ~ 338 (997)
+.-... +++.+.++. ++...|+|... ...+. ++.-... +..+.+..-.|++-. .+.|-|.+..+|..+.+
T Consensus 107 Gwglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 107 GWALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp CCEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred ceEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEE
Confidence 222222 233444442 35677788753 33332 2322222 234556667777654 78999999999999999
Q ss_pred EecCC
Q 043572 339 VTFGG 343 (997)
Q Consensus 339 i~~~~ 343 (997)
|++.+
T Consensus 186 idl~~ 190 (243)
T 3mbr_X 186 IDLQA 190 (243)
T ss_dssp EECGG
T ss_pred EECCc
Confidence 99764
No 221
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=81.69 E-value=36 Score=35.29 Aligned_cols=57 Identities=11% Similarity=-0.158 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
+....+.++..|+|++|+.+++......+... ......|..++..+++++|..+|.+
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~ 81 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA----SCLPVHIGTLVELNKANELFYLSHK 81 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----TTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34567888999999999999887643222111 1122244556778899999998876
No 222
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=81.61 E-value=47 Score=33.52 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=26.2
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
....|..+..-|+...+++ -+++.|++|++..
T Consensus 40 ~~~~v~~~~~spdg~~l~~-~~~~~i~~~d~~~ 71 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLL-NSEGLLYRLSLAG 71 (297)
T ss_dssp ESSCCEEEEECTTSSEEEE-EETTEEEEEESSS
T ss_pred CCcceEeeEECCCCCEEEE-EcCCeEEEEeCCC
Confidence 3557999999999886666 7789999999866
No 223
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=81.45 E-value=88 Score=37.27 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=44.0
Q ss_pred EEEEEECceEEEEEEeCC---eEEEEEeEecCCcceEEEEe--CCEEEEEECCcEEEEEecCCcceeeecC
Q 043572 196 VFAVIIGKRLVLIELVNG---SFVILKEIQCMDGVKTMVWL--NDSIIVGTVNGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~---~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~~y~lidl~~g~~~~l~~~ 261 (997)
.|+++....|.++....+ ....+.. ....+..+.|. |..|.++......++|+.+|....+...
T Consensus 122 ~l~~~~~~~i~~~d~~~~~~~~~~~l~~--~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 122 RLLFPLGGELYLYDLKQEGKAAVRQLTH--GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp EEEEEETTEEEEEESSSCSTTSCCBCCC--SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCC
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEccc--CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccC
Confidence 466667788888877665 3333221 23467888888 4568888888999999988876655443
No 224
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=81.07 E-value=0.42 Score=43.34 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCccccCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKDVLIKP 991 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~~~~~ 991 (997)
++-.|++|...+...+ ..||||.||..|+.... ...|| -+..+....+++.
T Consensus 22 ~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADPV--ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSEE--ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCcE--EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 4568999998887533 37999999999997642 34699 6666665554443
No 225
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=80.62 E-value=40 Score=34.11 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=32.9
Q ss_pred CceEEEEEEeC--CeEEEEEeEecCCcceEEEEeC--CEEEEEEC------------CcEEEEEecCCcceeeec
Q 043572 202 GKRLVLIELVN--GSFVILKEIQCMDGVKTMVWLN--DSIIVGTV------------NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 202 kkki~i~~~~~--~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~------------~~y~lidl~~g~~~~l~~ 260 (997)
...+.+|.+.. +....+.. ....+..+.|.. ..|+++.. ....++|+.++....+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 45577777752 23332221 123456778873 45666643 347888988887666654
No 226
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=80.50 E-value=67 Score=34.52 Aligned_cols=148 Identities=10% Similarity=0.010 Sum_probs=81.9
Q ss_pred EEEEEE--CceEEEEEEe-CCeEEEEEeEecC---CcceEEEEeC--CEEEEEEC--CcEEEEEec--CCcce------e
Q 043572 196 VFAVII--GKRLVLIELV-NGSFVILKEIQCM---DGVKTMVWLN--DSIIVGTV--NGYSLFSCV--TGQSG------V 257 (997)
Q Consensus 196 ~l~Va~--kkki~i~~~~-~~~~~~~kei~~~---~~~~~l~~~~--~~l~vg~~--~~y~lidl~--~g~~~------~ 257 (997)
.++++- .++|.+|.+. .+++.....+..+ ..|..+.|.. ..++++.. +...+++++ +|... .
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 355553 3678899987 5666655555543 4588999884 45877764 466777765 45432 1
Q ss_pred eecCCCCC-C-------CCceEE-cCCCCeEEEEeC---------CeEEE-EccCCCcccc--cccc-CCCCCeEEEeC-
Q 043572 258 IFTLPDVS-C-------PPMLKL-LSKEQKVLLLVD---------NVGVF-VDAHGQPVGG--SLVF-RKSPDAVGELS- 314 (997)
Q Consensus 258 l~~~~~~~-~-------~p~i~~-~~~~~e~Ll~~~---------~~g~f-v~~~G~~~r~--~i~w-~~~P~~i~~~~- 314 (997)
.++.+..+ . .|.-.. ++.++.+|.+.+ .+.+| ++.+|...+- .+.+ ...|..+++..
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 23322111 1 243344 554556665432 24444 3445664431 1332 23577776653
Q ss_pred ----cEEEEEE--CCeEEEEecCCCce--EEEEecCC
Q 043572 315 ----MYVVVLR--GGKMELYHKKSGIC--VQAVTFGG 343 (997)
Q Consensus 315 ----PYll~~~--~~~ieI~~~~~~~l--vQ~i~~~~ 343 (997)
-||++.. .+.|.|+.+....+ +..++++.
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~~l~~~~~~~~~~ 354 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPE 354 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCS
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchhhCceeeEEEcCC
Confidence 5887775 37899998876533 34455544
No 227
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=80.27 E-value=0.52 Score=43.65 Aligned_cols=51 Identities=14% Similarity=0.334 Sum_probs=37.5
Q ss_pred cCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccc
Q 043572 938 NDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVL 988 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~ 988 (997)
.++..|++|...+.. ...+..||||+||..|.... ....|| -++.|.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 356789999988754 23577899999999999765 345799 6666655443
No 228
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.03 E-value=1 Score=37.06 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.5
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc----CcccCC-CCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ----GESTSI-TGRDF 983 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~----~~~~~~-t~~~f 983 (997)
+.-..|++|...+.... ..-.|+|.||.+|+.+. ....|| =+.+|
T Consensus 13 ~~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 34578999999887532 22378999999999854 236799 33444
No 229
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=79.94 E-value=0.69 Score=42.77 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=31.7
Q ss_pred CCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccc
Q 043572 939 DESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVL 988 (997)
Q Consensus 939 ~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~ 988 (997)
+...|++|...+.. ...+..||||+||..|.... ....|| -...+.+.-+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 34566666655532 12367899999999999864 245799 4445554433
No 230
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=79.50 E-value=0.4 Score=38.21 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=32.5
Q ss_pred CCCcCccccCccCCccEEEcCCCeE-EEeccccccC--cccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQG--ESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~--~~~~~t~~ 981 (997)
....|.+|.....+.+++..||||+ +.+.|+.... ...||-++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR 51 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICK 51 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcC
Confidence 3568999998877766766799998 8999998752 23699433
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.30 E-value=6 Score=37.95 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=47.7
Q ss_pred eecCHHHHHHHHHhcCChHHHHHHHHHHh---hcch--hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 374 QKVPSEEQIKDLLRKKDFKEAISLAEELE---CEGE--MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 374 ~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~---~~~~--~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.+.-+.+|++.|++.++|+.|.-+++..- +.++ ...+..-++...+|..+|.+++|..|..+|.+
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 35567899999999999999998886632 1111 12233335666689999999999999999987
No 232
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.17 E-value=1.4 Score=36.99 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=32.6
Q ss_pred cCCCcCccccCccCCccEEEcCCC-----eEEEecccccc----CcccCC-CCCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDD-----TIVCYKCYRRQ----GESTSI-TGRDFK 984 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g-----~~~H~~C~~~~----~~~~~~-t~~~f~ 984 (997)
.++..|++|........-.+.||+ |.||..|+..- ....|| =...|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 356799999987753222368996 99999999864 224799 444443
No 233
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=79.05 E-value=23 Score=42.36 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=45.2
Q ss_pred eeeeEEeecC-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 32 LSISPISDCQ-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 32 ~~I~ci~~~~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
..|++++... +.++++ .+|.+..+.+..... ..+. .....+..+..-|+.+.++. ..|+
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~--------------~~l~----~~~~~~~~~~~SpdG~~la~-~~~~ 141 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKV--------------TYLF----DTNEETASLDFSPVGDRVAY-VRNH 141 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEE--------------EEEE----CCTTCCTTCEECTTSSEEEE-EETT
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCce--------------EEcc----CCcccccCCcCCCCCCEEEE-EECC
Confidence 3477777543 455555 559898888754321 1111 13446888888899887777 7899
Q ss_pred eEEEeecCc
Q 043572 111 CLFLTDSLL 119 (997)
Q Consensus 111 ~l~~~~l~~ 119 (997)
.|+++++..
T Consensus 142 ~i~v~~~~~ 150 (706)
T 2z3z_A 142 NLYIARGGK 150 (706)
T ss_dssp EEEEEECBC
T ss_pred eEEEEecCc
Confidence 999999876
No 234
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=78.59 E-value=64 Score=33.19 Aligned_cols=35 Identities=11% Similarity=-0.160 Sum_probs=25.7
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ 121 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~ 121 (997)
....+..+...+..+.++.+-.|+++.+|++..-+
T Consensus 149 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 35567777777877766665668899999986543
No 235
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=78.45 E-value=69 Score=33.53 Aligned_cols=74 Identities=8% Similarity=-0.041 Sum_probs=49.6
Q ss_pred eeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEE
Q 043572 31 SLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~ 106 (997)
...|+|++. .++.|+.|+.||.+..|.+..... .....++ -...+|..+...+. .+.++.+
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~------------~~~~~l~---gH~~~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ------------ILIADLR---GHEGPVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE------------EEEEEEE---CCSSCEEEEEECCGGGSSCEEEE
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc------------EEEEEEc---CCCccEEEEEeCCCCCCCEEEEE
Confidence 356788774 477899999999999998864321 0111111 15678999988754 4545554
Q ss_pred ecCCeEEEeecCc
Q 043572 107 FCDQCLFLTDSLL 119 (997)
Q Consensus 107 l~d~~l~~~~l~~ 119 (997)
-.|+++.+|++..
T Consensus 78 s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 78 SYDRKVIIWREEN 90 (316)
T ss_dssp ETTSCEEEECCSS
T ss_pred ECCCEEEEEECCC
Confidence 4589999999864
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=78.24 E-value=68 Score=33.30 Aligned_cols=175 Identities=12% Similarity=-0.049 Sum_probs=106.8
Q ss_pred EEEEEEC----ceEEEEEEeCCeEEEEEeEecCCcc--eEEEEeCCEEEEEE--CCcEEEEEecCCcceeeecCCCCCCC
Q 043572 196 VFAVIIG----KRLVLIELVNGSFVILKEIQCMDGV--KTMVWLNDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 196 ~l~Va~k----kki~i~~~~~~~~~~~kei~~~~~~--~~l~~~~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
+++|+.. .+|.++....++ ..+.+.++..+ ..+++.++.|++++ .+.-.++|..+++...-++.+ ...
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~~~ 108 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--MKD 108 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC--SSS
T ss_pred eEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC--CCC
Confidence 5777763 567777666543 34456565543 46788899999997 567999999988887778776 112
Q ss_pred CceEEcCCCCeEEEEe-CCeEEEEccCCCccccccccC--C----CCCeEEEeCcEEEEEE--CCeEEEEecCCCceEEE
Q 043572 268 PMLKLLSKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFR--K----SPDAVGELSMYVVVLR--GGKMELYHKKSGICVQA 338 (997)
Q Consensus 268 p~i~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~--~----~P~~i~~~~PYll~~~--~~~ieI~~~~~~~lvQ~ 338 (997)
+...... +..+.++. ++...++|........+|.-. . .|..+.+..-++.+-. .+.|-|.++.++..+.+
T Consensus 109 g~glt~D-g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~ 187 (266)
T 2iwa_A 109 GWGLATD-GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGW 187 (266)
T ss_dssp CCEEEEC-SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEE
T ss_pred eEEEEEC-CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEE
Confidence 3322222 33455542 367888887653322233221 1 2446666666666554 68999999999999999
Q ss_pred EecCCC------------CCCCceecccccCCCcEEEEEc--CCeEEEEeecCH
Q 043572 339 VTFGGE------------GGGQCIATDEECGAGKLLVVAT--PTKVICYQKVPS 378 (997)
Q Consensus 339 i~~~~~------------~~~~~i~~~~~~~~g~~~~v~s--~~~V~~l~~~~~ 378 (997)
|++++. .....|..+ . .++.+||+. ...|+.+...+.
T Consensus 188 I~~~g~~~~~~~~~~~~~~v~nGIa~~--~-~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 188 ILLPNLRKKLIDEGFRDIDVLNGIAWD--Q-ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EECHHHHHHHHHTTCTTCCCEEEEEEE--T-TTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCCcccccccccccccCceEEEEEc--C-CCCEEEEECCCCCeEEEEEEecc
Confidence 998521 000112211 1 245567766 366777766654
No 237
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=77.87 E-value=0.98 Score=49.32 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=31.3
Q ss_pred CCCcCccccCccCCccEEEcCCCeE-EEeccccccCcccCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQGESTSITGRD 982 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~~~~~~t~~~ 982 (997)
++..|++|.......+ ..||||. ++..|+... ..||.|+-
T Consensus 294 ~~~~C~IC~~~~~~~v--~lpCgH~~fC~~C~~~~--~~CP~CR~ 334 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVV--FIPCGHLVVCQECAPSL--RKCPICRG 334 (345)
T ss_dssp TTCBCTTTSSSBCCEE--EETTCCEEECTTTGGGC--SBCTTTCC
T ss_pred CCCCCCccCCcCCceE--EcCCCChhHhHHHHhcC--CcCCCCCC
Confidence 4578999998876533 3599999 999999986 56995543
No 238
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.62 E-value=0.85 Score=37.16 Aligned_cols=43 Identities=30% Similarity=0.665 Sum_probs=33.6
Q ss_pred CCcCccccCccCCccEEEcCC--CeEEEecccccc-------CcccCCCCCC
Q 043572 940 ESLCDSCHARLGTKLFAMYPD--DTIVCYKCYRRQ-------GESTSITGRD 982 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~--g~~~H~~C~~~~-------~~~~~~t~~~ 982 (997)
.-.|..|+.+|..+-|+-.|. +|-|..-|.+.. .+..||+|+.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~k 66 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 66 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCc
Confidence 358999999999999999995 788888887754 3556776653
No 239
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=76.87 E-value=95 Score=36.12 Aligned_cols=114 Identities=11% Similarity=-0.009 Sum_probs=72.2
Q ss_pred CCcceEEEeecccCcEEEEecCCeEEEeecCccccc--cc-cccccceEEEEeecccCCccccccccccccccccccCCc
Q 043572 88 DSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPL--KK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTS 164 (997)
Q Consensus 88 ~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~--~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (997)
...|..+.--|+...+.++-.||.+.+|+...+--. +. ....+++..++..+.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPD------------------------ 140 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPI------------------------ 140 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSS------------------------
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCC------------------------
Confidence 457999999999998888677899999985431000 11 111235666665431
Q ss_pred ccchhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCe-----EEEEEeEecC-----CcceEEEEe
Q 043572 165 TGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGS-----FVILKEIQCM-----DGVKTMVWL 233 (997)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~-----~~~~kei~~~-----~~~~~l~~~ 233 (997)
+ ..|+++. ...|.+|....+. |..++.+... +.|.+++|.
T Consensus 141 ----------------------------G-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 141 ----------------------------E-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY 191 (588)
T ss_dssp ----------------------------S-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred ----------------------------C-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence 1 2356666 4568899988763 3445555322 378999999
Q ss_pred CCEEEEE-ECCcEEEEEecCCc
Q 043572 234 NDSIIVG-TVNGYSLFSCVTGQ 254 (997)
Q Consensus 234 ~~~l~vg-~~~~y~lidl~~g~ 254 (997)
.+.+..| ..+...+.|++++.
T Consensus 192 PdgLaass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 192 EDVLVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TTEEEEEETTCCEEEECCCSSS
T ss_pred CCcEEEEeCCCeEEEEECCCCc
Confidence 7664333 55678888886543
No 240
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=76.38 E-value=0.41 Score=45.17 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=32.5
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSITG 980 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~t~ 980 (997)
+.++-.|++|...+... +..||||.|+..|+.... ...||++
T Consensus 28 l~~~~~C~IC~~~~~~p--v~~~CgH~FC~~Ci~~~~~~~~~~CP~C 72 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP--FQAQCGHRYCSFCLASILSSGPQNCAAC 72 (141)
T ss_dssp CCGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHGGGSCEECHHH
T ss_pred CCcCcCCCCCChhhcCc--EECCCCCccCHHHHHHHHhcCCCCCCCC
Confidence 45677999999888764 347999999999998752 2468944
No 241
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=75.97 E-value=1.2 Score=38.45 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=28.4
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccc---cCcccCCCC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRR---QGESTSITG 980 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~---~~~~~~~t~ 980 (997)
-|..|+.||.. --..-||+|+|-|.|+.. .....||-+
T Consensus 3 fC~~C~~Pi~i-ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C 43 (101)
T 3vk6_A 3 FCDKCGLPIKV-YGRMIPCKHVFCYDCAILHEKKGDKMCPGC 43 (101)
T ss_dssp BCTTTCSBCSE-EEEEETTCCEEEHHHHHHHHHTTCCBCTTT
T ss_pred ecCccCCCeEE-EeeeccccccHHHHHHHHHHhccCCCCcCc
Confidence 49999999874 233569999999999975 335678843
No 242
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=75.39 E-value=54 Score=33.97 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcch-hh-HHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGE-MA-KEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~-~~-~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.++..++..|+|++|+..++..-.... .. ....-..+...|..+...++|++|+.+|.+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 140 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 466778899999999999876432211 11 111122233466767778899999999876
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=74.49 E-value=54 Score=31.71 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=44.2
Q ss_pred cCHHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcC
Q 043572 376 VPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSE 440 (997)
Q Consensus 376 ~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~ 440 (997)
.+.+.+.+-.++.|+++.|.++++.... .. .-.+.|..-+.+|+++-|...|.+.+
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~-----~~----~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLND-----SI----TWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCC-----HH----HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCC-----HH----HHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4677889999999999999999987643 11 22345667788999999999998864
No 244
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=74.43 E-value=1.1e+02 Score=34.00 Aligned_cols=142 Identities=8% Similarity=0.068 Sum_probs=72.1
Q ss_pred EEEEEE---CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEE--ECCcEEEEEecCCcce----eeecCCCCCC
Q 043572 196 VFAVII---GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVG--TVNGYSLFSCVTGQSG----VIFTLPDVSC 266 (997)
Q Consensus 196 ~l~Va~---kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg--~~~~y~lidl~~g~~~----~l~~~~~~~~ 266 (997)
+++|+- ...|.++.... .+.++++.++..+ .+.-.+...+++ .......+|+.++.+. ..+..+.
T Consensus 190 ~lyV~n~~~~~~VsVID~~t--~kvv~~I~v~g~~-~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~--- 263 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEG--KTFDRMLDVPDCY-HIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED--- 263 (426)
T ss_dssp EEEEEECSSSCEEEEEETTT--TEEEEEEECCSEE-EEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT---
T ss_pred EEEEEecCCCCeEEEEECCC--CeEEEEEEcCCce-eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC---
Confidence 456653 34677766554 3455667765531 222223333333 3346777887666554 2344332
Q ss_pred CCceE---EcCCCCeEEEE-eCCeEEEEccCCCccc--c----------ccccC-CCCCeEEEe--CcEEEEEE------
Q 043572 267 PPMLK---LLSKEQKVLLL-VDNVGVFVDAHGQPVG--G----------SLVFR-KSPDAVGEL--SMYVVVLR------ 321 (997)
Q Consensus 267 ~p~i~---~~~~~~e~Ll~-~~~~g~fv~~~G~~~r--~----------~i~w~-~~P~~i~~~--~PYll~~~------ 321 (997)
.|... .-++++.+++. .++....+|..|.... . ..-|. .....++++ ..++++..
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 23221 12233454444 3344445565443211 0 11121 112224554 35666553
Q ss_pred -----CCeEEEEecCCCceEEEEecCC
Q 043572 322 -----GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 322 -----~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
.+.|.|.+..+++.+.+|++..
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg~ 370 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELGH 370 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred cccCCCCEEEEEECCCCeEEEEEECCC
Confidence 2479999999999999998865
No 245
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=74.42 E-value=57 Score=30.56 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=23.7
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
|..|+..|...|++++|++.+.+....
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~ 34 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKA 34 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667899999999999999999987653
No 246
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=74.31 E-value=2.1 Score=34.55 Aligned_cols=33 Identities=9% Similarity=0.355 Sum_probs=27.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|.....++...|..+|..|..=
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C 42 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVC 42 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcc
Confidence 467999999999876555667889999999873
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=74.13 E-value=86 Score=32.43 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=92.2
Q ss_pred EEEEEECc----eEEEEEEeCCeEEEEEeEecCCcc--eEEEEeCCEEEEEE--CCcEEEEEecCCcceeeecCCCCCCC
Q 043572 196 VFAVIIGK----RLVLIELVNGSFVILKEIQCMDGV--KTMVWLNDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 196 ~l~Va~kk----ki~i~~~~~~~~~~~kei~~~~~~--~~l~~~~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
.+.+++.. +|..+....+ +..+++.++..+ -.++..++.|++++ .+.-.++|.++++...-|+++..
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tg--kv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e--- 128 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESG--KTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE--- 128 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTC--CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---
T ss_pred EEEEECCCCCCceEEEEECCCC--cEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC---
Confidence 45555543 5665555544 344566677665 45788899999998 66789999999988877887542
Q ss_pred CceEEcCCCCeEEEEe-CCeEEEEccC-CCcccc-ccccCCCCC----eEEEeCcEEEEEE--CCeEEEEecCCCceEEE
Q 043572 268 PMLKLLSKEQKVLLLV-DNVGVFVDAH-GQPVGG-SLVFRKSPD----AVGELSMYVVVLR--GGKMELYHKKSGICVQA 338 (997)
Q Consensus 268 p~i~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~-~i~w~~~P~----~i~~~~PYll~~~--~~~ieI~~~~~~~lvQ~ 338 (997)
+.-... ++..+.++. ++...|+|.. +...+. ++.....|. .+.+..-.|.+-. .+.|-+.+..+|..+.+
T Consensus 129 G~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~ 207 (262)
T 3nol_A 129 GWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGI 207 (262)
T ss_dssp CCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred ceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 222222 233444442 3578888975 444432 333333332 3566677777654 68899999999999999
Q ss_pred EecCC
Q 043572 339 VTFGG 343 (997)
Q Consensus 339 i~~~~ 343 (997)
|++++
T Consensus 208 Id~~~ 212 (262)
T 3nol_A 208 IDLNG 212 (262)
T ss_dssp EECTT
T ss_pred EECCc
Confidence 99864
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=73.83 E-value=46 Score=34.60 Aligned_cols=140 Identities=11% Similarity=0.010 Sum_probs=89.1
Q ss_pred EEEEEECc--eEEEEEEeCCeEEEEEeEecCCcc--eEEEEeCCEEEEEE--CCcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 196 VFAVIIGK--RLVLIELVNGSFVILKEIQCMDGV--KTMVWLNDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 196 ~l~Va~kk--ki~i~~~~~~~~~~~kei~~~~~~--~~l~~~~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
.+.+++.. +|..+....++ ..+++ ++..+ -.++..++.|++++ .+.-.++|.+|++...-|+++.. +.
T Consensus 66 ~Ly~stG~~g~v~~iD~~Tgk--v~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e---Gw 139 (268)
T 3nok_A 66 HFFESTGHQGTLRQLSLESAQ--PVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE---GW 139 (268)
T ss_dssp EEEEEETTTTEEEECCSSCSS--CSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC---CC
T ss_pred EEEEEcCCCCEEEEEECCCCc--EEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc---ee
Confidence 46666655 45555544443 33455 66655 44788899999998 66799999999888777887532 22
Q ss_pred eEEcCCCCeEEEEe-CCeEEEEccCC-Ccccc-ccccCCC----CCeEEEeCcEEEEEE--CCeEEEEecCCCceEEEEe
Q 043572 270 LKLLSKEQKVLLLV-DNVGVFVDAHG-QPVGG-SLVFRKS----PDAVGELSMYVVVLR--GGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 270 i~~~~~~~e~Ll~~-~~~g~fv~~~G-~~~r~-~i~w~~~----P~~i~~~~PYll~~~--~~~ieI~~~~~~~lvQ~i~ 340 (997)
-... ++..+.++. ++...|+|... ...+. ++.-... +..+.+..-.|.+-. .+.|-+.+..+|..+.+|.
T Consensus 140 GLt~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 140 GLCY-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp CEEE-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred EEec-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 2222 233455553 46788899754 44332 2222221 234556666777654 6789999999999999999
Q ss_pred cC
Q 043572 341 FG 342 (997)
Q Consensus 341 ~~ 342 (997)
+.
T Consensus 219 l~ 220 (268)
T 3nok_A 219 AS 220 (268)
T ss_dssp CH
T ss_pred CC
Confidence 85
No 249
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=73.62 E-value=42 Score=35.33 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=23.8
Q ss_pred eeeeEEeec----CCeEEEEcCCceEEEEEeCCC
Q 043572 32 LSISPISDC----QVLIYIGTQSGSLILLSLDPT 61 (997)
Q Consensus 32 ~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~ 61 (997)
..|+|++.. +..|+.|+.||.+..|.....
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 468888764 457999999999999988653
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=73.30 E-value=71 Score=33.16 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=83.6
Q ss_pred EEEEEeEecCCc--ceEEEEeC-CEEEEEEC----CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe--CC
Q 043572 215 FVILKEIQCMDG--VKTMVWLN-DSIIVGTV----NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--DN 285 (997)
Q Consensus 215 ~~~~kei~~~~~--~~~l~~~~-~~l~vg~~----~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~ 285 (997)
++.++++..+.. ++.+.|.+ +.|++++. +....+|+.+|++..-++.+......-+. +. ++.+.++. ++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~-~~-g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLT-LL-NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEE-EE-TTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEE-Ee-CCEEEEEEecCC
Confidence 456677877654 58899987 67999874 68999999999887777665321111222 22 23555553 57
Q ss_pred eEEEEccC-CCccccccccC-CCCCeEEEeCcEEEEE-ECCeEEEEecCCCceEEEEecCC
Q 043572 286 VGVFVDAH-GQPVGGSLVFR-KSPDAVGELSMYVVVL-RGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 286 ~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~~PYll~~-~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
.+..+|.. ++.. .++... ..+..+..+.-.+++- ..+.|.+.+..+...+.+|+...
T Consensus 87 ~v~viD~~t~~v~-~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 87 IGFIYDRRTLSNI-KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp EEEEEETTTTEEE-EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEEECCCCcEE-EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC
Confidence 78888864 4443 345444 4555666665566643 35789999999999999998753
No 251
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=72.97 E-value=90 Score=32.17 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=41.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhH--HHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAK--EMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~--~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.+++.++..|+|++|+.+++.......... ...-..+...|..++..++|++|+.+|.++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~a 141 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 457889999999999999988654221111 112233444567677788999999999873
No 252
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=72.96 E-value=85 Score=31.88 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=49.6
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEE--CCcEEEEEecCCcceeeecCCCCCCCCceE
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCPPMLK 271 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~p~i~ 271 (997)
+.|+.. ..|..|.. .+.+....-......|..+.+.. +.|+++. ......+|. +|.... +........|.-.
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i 230 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAI 230 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEE
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeE
Confidence 455553 35555544 33343321101123467888774 4588887 457888887 676544 3222222344444
Q ss_pred EcCCCCeEEEEe--CCeEEEEccCCC
Q 043572 272 LLSKEQKVLLLV--DNVGVFVDAHGQ 295 (997)
Q Consensus 272 ~~~~~~e~Ll~~--~~~g~fv~~~G~ 295 (997)
.+..++.+.++. ++....++.+|.
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~g~ 256 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSNNI 256 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETTTE
T ss_pred EECCCCCEEEeccCCceEEEECCCCc
Confidence 444444666664 344555676654
No 253
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.59 E-value=0.77 Score=37.93 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=28.6
Q ss_pred CcCccccCccCCccEEEcCCCeE-EEeccccccCcccCCCCC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQGESTSITGR 981 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~~~~~~t~~ 981 (997)
..|++|.......+ ..||||. ++..|.... ..||.++
T Consensus 26 ~~C~IC~~~~~~~~--~~pCgH~~~C~~C~~~~--~~CP~Cr 63 (75)
T 2ecg_A 26 KLCKICMDRNIAIV--FVPCGHLVTCKQCAEAV--DKCPMCY 63 (75)
T ss_dssp HSCSSSCSSCCCBC--CSSSCCCCBCHHHHHHC--SBCTTTC
T ss_pred CCCCcCCCCCCCEE--EecCCCHHHHHHHhhCC--CCCccCC
Confidence 46999988876543 3799999 999999764 5699444
No 254
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=72.06 E-value=1.2e+02 Score=34.72 Aligned_cols=81 Identities=15% Similarity=0.033 Sum_probs=49.3
Q ss_pred eeeeEEeecC--------CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 32 LSISPISDCQ--------VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 32 ~~I~ci~~~~--------~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
..|.+++... +.|.-|+.||.+..|.+......... .. ....+...+. ....+|..+...+. +.+
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~-~~--~~~~p~~~l~---~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV-FK--MCEKPSLTLS---LADSLITTFDFLSP-TTV 280 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE-EE--CCCSCSEEEC---CTTTCEEEEEESSS-SEE
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc-ce--eecCceEEEE---cCCCCEEEEEecCC-CeE
Confidence 3577777542 47888999999999998654311000 00 0000111111 24568988887775 456
Q ss_pred EEEecCCeEEEeecCc
Q 043572 104 LLLFCDQCLFLTDSLL 119 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~ 119 (997)
+.+-.||+|.+|++..
T Consensus 281 asgs~DgtV~lWD~~~ 296 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTD 296 (524)
T ss_dssp EEEETTSEEEEEETTB
T ss_pred EEEeCCCEEEEEECCC
Confidence 6666789999999864
No 255
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.64 E-value=2.2 Score=34.59 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.2
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.....++...|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C 36 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFIC 36 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcc
Confidence 46899999999875445566788999999874
No 256
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.74 E-value=2.3 Score=34.43 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.....++...|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C 36 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLC 36 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeE
Confidence 46899999999865455677788999999874
No 257
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=69.67 E-value=53 Score=39.23 Aligned_cols=30 Identities=17% Similarity=0.074 Sum_probs=24.4
Q ss_pred cceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 90 PVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
.|..+..-|+...+++ -++++|++|++..-
T Consensus 110 ~v~~~~~SpDg~~l~~-~~~~~i~~~d~~~~ 139 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLF-PLGGELYLYDLKQE 139 (741)
T ss_dssp ESCCCEECTTSSEEEE-EETTEEEEEESSSC
T ss_pred CcceeEECCCCCEEEE-EeCCcEEEEECCCC
Confidence 3788888899886666 77799999998764
No 258
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=69.67 E-value=2.5e+02 Score=35.82 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=48.9
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc------cCcEE
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD------VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~------~~~lL 104 (997)
+..|+++++.+..+.+.+ .|.++.+.++++.- ... ..+.+ ...|..+.+.|. ...++
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L------------~~~---~~~~l-~~evscl~i~~~~~~~~~s~~~a 575 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQEL------------RQI---SHTEM-EHEVACLDITPLGDSNGLSPLCA 575 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTEE------------EEE---EEEEC-SSCEEEEECCCCSSSTTCCSEEE
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCce------------eee---cccCC-CCceEEEEeecCCCCcccccEEE
Confidence 457888888899999996 67777666664210 001 11112 235777776543 24566
Q ss_pred EEec-CCeEEEeecCcccccc
Q 043572 105 LLFC-DQCLFLTDSLLTQPLK 124 (997)
Q Consensus 105 v~l~-d~~l~~~~l~~l~~~~ 124 (997)
|.+. |+++.+++|+.++++.
T Consensus 576 Vg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 576 IGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp EEETTTTEEEEEETTTCCEEE
T ss_pred EEECCCCEEEEEECCCCCeEE
Confidence 6454 8899999999887653
No 259
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=69.67 E-value=90 Score=30.79 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..++..|++++|+..++......+.. ..++...|..++..++|++|.++|.+.
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55778999999999998764322111 234556778888999999999999763
No 260
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.54 E-value=1.5 Score=35.45 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCCcCccccCccCCccEEEcCCCeE-EEeccccccCcccCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQGESTSITGRD 982 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~~~~~~t~~~ 982 (997)
+...|.+|.....+ .+..||||. +...|.... ..||.++.
T Consensus 14 ~~~~C~IC~~~~~~--~v~~pCgH~~~C~~C~~~~--~~CP~CR~ 54 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN--WVLLPCRHTCLCDGCVKYF--QQCPMCRQ 54 (68)
T ss_dssp CSSCCSSSSSSCCC--CEETTTTBCCSCTTHHHHC--SSCTTTCC
T ss_pred CCCCCCCcCcCCCC--EEEECCCChhhhHHHHhcC--CCCCCCCc
Confidence 46789999876654 556899999 999999864 56994443
No 261
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=69.43 E-value=96 Score=35.51 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCccc
Q 043572 377 PSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSE 446 (997)
Q Consensus 377 ~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~~ 446 (997)
.+...+.-+...|++++|+.+++......+... .+....|..+...|++++|.++|.+.-.++|..
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKA----VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 345566778889999999999877643221111 233345667788889999988887632234543
No 262
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=69.22 E-value=1.2e+02 Score=32.26 Aligned_cols=54 Identities=9% Similarity=-0.056 Sum_probs=37.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
+...++..|++++|+..++......+... ......|..++..+++++|..++.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 58 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNT----GVLLLLSSIHFQCRRLDRSAHFSTL 58 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678899999999999877543222111 2334456678888999999988865
No 263
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=68.59 E-value=1.5 Score=34.96 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=31.0
Q ss_pred cCCCcCccccCccCCccEEEcCCCeE-EEeccccccC--cccCCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQG--ESTSITGR 981 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~--~~~~~t~~ 981 (997)
.++..|.+|.....+.+|..-||||+ +-+.|..... ...||.++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR 52 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCR 52 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcC
Confidence 35678999998877655444499999 5689988652 34599433
No 264
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=68.25 E-value=1.8 Score=44.68 Aligned_cols=49 Identities=4% Similarity=-0.119 Sum_probs=36.3
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC----cccCC-CC--CCCCCccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG----ESTSI-TG--RDFKKDVL 988 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~----~~~~~-t~--~~f~~~~~ 988 (997)
.+-+|++|...+.. ++..-.|||+|-..|..... ...|| || +.+...-+
T Consensus 180 ~el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcccC-CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 45799999999976 44456899999999988763 24699 77 66654443
No 265
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=67.68 E-value=3.1 Score=34.26 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCcCccccCccCC---ccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGT---KLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~---~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.. ...++-..|..+|..|+.=
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C 49 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHC 49 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBC
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEe
Confidence 4689999999986 4455666789999999874
No 266
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=67.66 E-value=40 Score=37.28 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=79.9
Q ss_pred EEEEEECceEEEEEEeCCe---------EEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcc---eeeecCCC
Q 043572 196 VFAVIIGKRLVLIELVNGS---------FVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQS---GVIFTLPD 263 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~---------~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~---~~l~~~~~ 263 (997)
.++++..+++.++....-+ |.....+.+|. |..++|.++.|++|......++|+.+... .+.+..+
T Consensus 51 ll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~- 128 (388)
T 1xip_A 51 LFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKP- 128 (388)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSC-
T ss_pred EEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchhhhccCccceeecc-
Confidence 4778888999887654322 45444566788 99999966779999888999999875432 2222221
Q ss_pred CCCCCceEEcCCCCeEEEEeCC-eEEEEccC-CCccc---c--ccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCce-
Q 043572 264 VSCPPMLKLLSKEQKVLLLVDN-VGVFVDAH-GQPVG---G--SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGIC- 335 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~~~-~g~fv~~~-G~~~r---~--~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~l- 335 (997)
. -.+...+. .++++.++ .....+.. |.... + .+.|+ |.. .+++..++.+.++...++..
T Consensus 129 --v-~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WS--pkG------~~vg~~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 129 --V-FQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT--NSQ------LAVLLKDRSFQSFAWRNGEME 195 (388)
T ss_dssp --E-EEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC--SSE------EEEEETTSCEEEEEEETTEEE
T ss_pred --e-eeEEecCC--CEEEEECCCCEEEEEccCCccccccCCceEEEEc--CCc------eEEEEcCCcEEEEcCCCcccc
Confidence 1 02233332 47766544 33344543 32211 1 34553 222 45677789999998888776
Q ss_pred -EEEEecC
Q 043572 336 -VQAVTFG 342 (997)
Q Consensus 336 -vQ~i~~~ 342 (997)
..+|+.+
T Consensus 196 ~k~~I~~P 203 (388)
T 1xip_A 196 KQFEFSLP 203 (388)
T ss_dssp EEEEECCC
T ss_pred ccceecCC
Confidence 6777543
No 267
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=67.65 E-value=1.2e+02 Score=32.41 Aligned_cols=56 Identities=9% Similarity=-0.027 Sum_probs=40.2
Q ss_pred HHHhcCChHHHHHHHHHHhhcc-h-hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 384 DLLRKKDFKEAISLAEELECEG-E-MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 384 ~Ll~~~~~eeAl~L~~~~~~~~-~-~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.+...|++++|+...+....-. . .+......++...|..++..++|++|+.++.++
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567899999999997764311 0 112224467777889899999999999998873
No 268
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.41 E-value=2.3 Score=34.56 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=24.6
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.....++...|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C 36 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVC 36 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBC
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcc
Confidence 46899999999864445566788899998763
No 269
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=67.40 E-value=1.1e+02 Score=31.02 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=42.2
Q ss_pred CcceEEEEeC-CEEEEEE--CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe--CC-eEEEEccCCCcc
Q 043572 225 DGVKTMVWLN-DSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--DN-VGVFVDAHGQPV 297 (997)
Q Consensus 225 ~~~~~l~~~~-~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~-~g~fv~~~G~~~ 297 (997)
..|..+++.. +.++|+. .+...++|.. |.....+...+....|.-..+..++.++++. ++ ....++.+|...
T Consensus 164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~ 241 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI 241 (286)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred CCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE
Confidence 3578888885 4688886 4578888864 5443334332212345444555455666664 33 555567777654
No 270
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=67.37 E-value=85 Score=33.63 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=71.0
Q ss_pred CceEEEEEEeC-CeEEE-EEeEe--cCCcceEEEEeC--CEEEEEEC--CcEEEEEec-CCcceee--ecCCCCCCCCce
Q 043572 202 GKRLVLIELVN-GSFVI-LKEIQ--CMDGVKTMVWLN--DSIIVGTV--NGYSLFSCV-TGQSGVI--FTLPDVSCPPML 270 (997)
Q Consensus 202 kkki~i~~~~~-~~~~~-~kei~--~~~~~~~l~~~~--~~l~vg~~--~~y~lidl~-~g~~~~l--~~~~~~~~~p~i 270 (997)
...+.+|.+.. ++... +..+. ....+.++.|.. ..++++.. ....++|++ +|+...+ +.....+..|.-
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 44678888863 33332 12111 234578888874 45777753 478899998 7765443 221111234544
Q ss_pred EEcCCCCeEEEE-e--CC-eEEE-Ecc-CCCccc--c---cc--ccCC---------CCCeEE-EeC--cEEEEEE--CC
Q 043572 271 KLLSKEQKVLLL-V--DN-VGVF-VDA-HGQPVG--G---SL--VFRK---------SPDAVG-ELS--MYVVVLR--GG 323 (997)
Q Consensus 271 ~~~~~~~e~Ll~-~--~~-~g~f-v~~-~G~~~r--~---~i--~w~~---------~P~~i~-~~~--PYll~~~--~~ 323 (997)
..+..++.+|.+ . ++ +.+| ++. .|.... . .+ .+.. .|..++ +.. -||++.. .+
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 455545555543 3 23 3333 343 465321 1 11 1211 355666 432 2666543 34
Q ss_pred -----eEEEEecC-CCceEE
Q 043572 324 -----KMELYHKK-SGICVQ 337 (997)
Q Consensus 324 -----~ieI~~~~-~~~lvQ 337 (997)
.|.|+++. ++.+.+
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEE
T ss_pred CCCCCeEEEEEECCCCCEEE
Confidence 89999986 677654
No 271
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=66.74 E-value=1.4e+02 Score=31.90 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=60.3
Q ss_pred EEEeCCEEEEEECC-cEEEEEecCCcceeeecCCCC------------CCCCceEEcCCCCeEEEEe-CCeEEEEcc-CC
Q 043572 230 MVWLNDSIIVGTVN-GYSLFSCVTGQSGVIFTLPDV------------SCPPMLKLLSKEQKVLLLV-DNVGVFVDA-HG 294 (997)
Q Consensus 230 l~~~~~~l~vg~~~-~y~lidl~~g~~~~l~~~~~~------------~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~-~G 294 (997)
....++.+++|+.. ....+|..+|+..--++.... ...|.+ . ++.+.++. +.....+|. +|
T Consensus 184 ~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~-~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 184 PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---V-NGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp CEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---E-TTEEEEECTTSCEEEEETTTC
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---E-CCEEEEEecCcEEEEEECCCC
Confidence 34457889998765 588899988876544443321 122222 1 33555553 444555664 45
Q ss_pred CccccccccCCC---CCeEEEeCcEEEEEEC-CeEEEEecCCCceEEEEe
Q 043572 295 QPVGGSLVFRKS---PDAVGELSMYVVVLRG-GKMELYHKKSGICVQAVT 340 (997)
Q Consensus 295 ~~~r~~i~w~~~---P~~i~~~~PYll~~~~-~~ieI~~~~~~~lvQ~i~ 340 (997)
+ +.|... +..+++..-.|++... +.|..++..+|..+-..+
T Consensus 260 ~-----~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 260 Q-----IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp C-----EEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred c-----EEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 4 345422 3345566667777664 588899999998765554
No 272
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=66.67 E-value=1.4e+02 Score=31.86 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-++..|++++|..+++......+.. ...+...|..++..|+|++|...|.+.
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34667899999998887654322211 234556778889999999999999863
No 273
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.98 E-value=2.2 Score=35.13 Aligned_cols=33 Identities=9% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|.....++...|..+|..|+.=
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C 42 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVC 42 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCC
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeE
Confidence 457999999999754444556788999999874
No 274
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=65.05 E-value=1.2e+02 Score=30.39 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=38.1
Q ss_pred cceEEEEeC-CEEEEEEC--CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe--CCeEEEEccCCCc
Q 043572 226 GVKTMVWLN-DSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDAHGQP 296 (997)
Q Consensus 226 ~~~~l~~~~-~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~G~~ 296 (997)
.|..+++.. +.++++.. .....+|..++.... ..... ...|.-..+..++.+.++. ++....++.+|..
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe-ecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 567888874 45888865 467788876443322 21111 1234444454444566654 3455566776654
No 275
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=64.91 E-value=1.2e+02 Score=30.58 Aligned_cols=116 Identities=6% Similarity=-0.123 Sum_probs=70.1
Q ss_pred CcceEEEEe--CCEEEEEECC----cEEEEEecCCcceeeecCCCCCCCCceEEcCC-CCeEEEEe--CCeEEEEccCCC
Q 043572 225 DGVKTMVWL--NDSIIVGTVN----GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSK-EQKVLLLV--DNVGVFVDAHGQ 295 (997)
Q Consensus 225 ~~~~~l~~~--~~~l~vg~~~----~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~-~~e~Ll~~--~~~g~fv~~~G~ 295 (997)
..|..+++. ++.|+|+... ....++++......+... . ...|.-..++. ++.+.++. ++....++.+|.
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~-~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-N-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT-T-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC-C-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 457888887 4678888643 455677653333333322 1 12355445543 33444442 245556777764
Q ss_pred ccccccccCCCCCeEEEeCcEEEEEE--CCeEEEEecCCCceEEEEecC
Q 043572 296 PVGGSLVFRKSPDAVGELSMYVVVLR--GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 296 ~~r~~i~w~~~P~~i~~~~PYll~~~--~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
..+..+.--..|..++...-++++.. .+.|.+++..++..+++|+..
T Consensus 200 ~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 200 GRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp EEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred ceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence 32222222346888988888888765 468999999999999999754
No 276
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=64.67 E-value=1.3 Score=29.62 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=20.7
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~ 969 (997)
..+|+.|+|.+-...- +.-.|..+|..|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek-~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEK-VNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGC-CCSSSSCCCGGGC
T ss_pred CCcCCccCCEEeccee-EEECCeEecccCC
Confidence 4689999999864221 2246888999885
No 277
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=64.37 E-value=1.3e+02 Score=30.74 Aligned_cols=172 Identities=10% Similarity=0.010 Sum_probs=90.0
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEec---CCcceEEEEeC-CEEEEEEC-------------------CcEEEEEec
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQC---MDGVKTMVWLN-DSIIVGTV-------------------NGYSLFSCV 251 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~---~~~~~~l~~~~-~~l~vg~~-------------------~~y~lidl~ 251 (997)
+.|+.. ..|.+|....+.+..+..... ...+..+.+.. +.++++.. .....+|..
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 455553 456666654455554322111 12345677764 35777421 244445543
Q ss_pred CCcceeeecCCCCCCCCceEEcCCCCeEEEEeC--CeEEEEcc--CCCc-ccc-cccc-CCCCCeEEEeC-cEEEEEECC
Q 043572 252 TGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD--NVGVFVDA--HGQP-VGG-SLVF-RKSPDAVGELS-MYVVVLRGG 323 (997)
Q Consensus 252 ~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~--~~g~fv~~--~G~~-~r~-~i~w-~~~P~~i~~~~-PYll~~~~~ 323 (997)
|....+... ...|.-..+..++.++++.. +....++. +|.. ... .+.. ...|..+++.. -.|.+...+
T Consensus 162 -g~~~~~~~~---~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 237 (296)
T 3e5z_A 162 -GTLSAPIRD---RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGD 237 (296)
T ss_dssp -SCEEEEECC---CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETT
T ss_pred -CCEEEeecC---CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCC
Confidence 444333221 12343344444445554422 33333443 4554 222 2211 34588888762 244444488
Q ss_pred eEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEEeecC
Q 043572 324 KMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVP 377 (997)
Q Consensus 324 ~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~~~ 377 (997)
.|.+++.. +..+..+..+.. +....+. ..+++.+++++...+|++.+.+
T Consensus 238 ~v~~~~~~-g~~~~~~~~~~~-~~~~~f~---~~d~~~L~v~t~~~l~~~~~~~ 286 (296)
T 3e5z_A 238 GVHVLTPD-GDELGRVLTPQT-TSNLCFG---GPEGRTLYMTVSTEFWSIETNV 286 (296)
T ss_dssp EEEEECTT-SCEEEEEECSSC-CCEEEEE---STTSCEEEEEETTEEEEEECSC
T ss_pred eEEEECCC-CCEEEEEECCCC-ceeEEEE---CCCCCEEEEEcCCeEEEEEccc
Confidence 99999976 788888887653 2122221 1134568889999999998865
No 278
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.22 E-value=3.9 Score=33.61 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=21.7
Q ss_pred CCcCccccCccCC--ccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGT--KLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.. ..-++...|..+|..|++=
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C 38 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNC 38 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCCh
Confidence 3578888888875 3333455677888877763
No 279
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=63.59 E-value=11 Score=31.67 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.+...++..|++++|+..++..-...+.. ....+...|..++..++|++|...|.+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567889999999999998764322211 1125566788889999999999999863
No 280
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=62.53 E-value=2e+02 Score=32.23 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=129.0
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC-EEEEEECCcEEEEEecCCccee--eecCCCC--C-----
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND-SIIVGTVNGYSLFSCVTGQSGV--IFTLPDV--S----- 265 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~-~l~vg~~~~y~lidl~~g~~~~--l~~~~~~--~----- 265 (997)
.|++-..+.+++|.+... .++|.+.++++|.-=.|.++ .|.+.+.+..+-.++.+ ...| +|..... +
T Consensus 79 iiALrag~~lQiFnle~K--~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIIn 155 (494)
T 1bpo_A 79 VIALKAGKTLQIFNIEMK--SKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIIN 155 (494)
T ss_dssp CEEEEETTEEEEEETTTT--EEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEE
T ss_pred EEEEecCCeEEEEchHHh--hhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccC-CCCchhheecchhcccceEEE
Confidence 456656788999998764 56788889999988888864 59999999988899863 4333 3433210 0
Q ss_pred --------------------------------------CCCceEEc-----C--CCCeEEEEeC------CeEEEEcc--
Q 043572 266 --------------------------------------CPPMLKLL-----S--KEQKVLLLVD------NVGVFVDA-- 292 (997)
Q Consensus 266 --------------------------------------~~p~i~~~-----~--~~~e~Ll~~~------~~g~fv~~-- 292 (997)
..-....+ + ..+--|+|+. ....++..
T Consensus 156 Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp EEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred EEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 00011111 1 0112233321 12222222
Q ss_pred C--CCcc--cc--ccccC-----CCCCeEEEeCcE--EEEEEC-CeEEEEecCCCceEEEEecCCCCCCCceecccccCC
Q 043572 293 H--GQPV--GG--SLVFR-----KSPDAVGELSMY--VVVLRG-GKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGA 358 (997)
Q Consensus 293 ~--G~~~--r~--~i~w~-----~~P~~i~~~~PY--ll~~~~-~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~ 358 (997)
. |.+. +. .+.++ +-|.++.+..-| |++++. +.|.+|+++||..+-.-.++... -+..+.... .
T Consensus 236 ~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~--iF~t~~~~~-~ 312 (494)
T 1bpo_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET--IFVTAPHEA-T 312 (494)
T ss_dssp CCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEEETT-T
T ss_pred CccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc--eEEecccCC-C
Confidence 1 2211 11 23332 335666665444 445554 78999999999988666665531 122222222 2
Q ss_pred CcEEEEEcCCeEEEEeecCHHHHHHHHH-hcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 043572 359 GKLLVVATPTKVICYQKVPSEEQIKDLL-RKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFL 437 (997)
Q Consensus 359 g~~~~v~s~~~V~~l~~~~~~~qi~~Ll-~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~ 437 (997)
|+++-|...+.|.....-. ..-|.-+. ....-+.|+.+|....-.+..+ -+.+++. .+|.+|+|++|+....
T Consensus 313 ~Gi~~Vnr~GqVl~v~v~e-~~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~-L~~~~F~-----~l~~~g~y~~AA~~aA 385 (494)
T 1bpo_A 313 AGIIGVNRKGQVLSVCVEE-ENIIPYITNVLQNPDLALRMAVRNNLAGAEE-LFARKFN-----ALFAQGNYSEAAKVAA 385 (494)
T ss_dssp TEEEEEETTCEEEEEEECT-TTHHHHHHHTTCCHHHHHHHHHHTTCSSCHH-HHHHHHH-----HHHHTTCHHHHHHHHH
T ss_pred CcEEEEccCceEEEEEEcc-ccchhhhhhccCCHHHHHHHHHhcCCccHHH-HHHHHHH-----HHHHcCCHHHHHHHHH
Confidence 4566667777777655432 22222222 2367889999998875433211 1222333 4789999999999876
Q ss_pred h
Q 043572 438 H 438 (997)
Q Consensus 438 ~ 438 (997)
.
T Consensus 386 ~ 386 (494)
T 1bpo_A 386 N 386 (494)
T ss_dssp H
T ss_pred h
Confidence 5
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=62.48 E-value=1.7e+02 Score=32.47 Aligned_cols=146 Identities=7% Similarity=0.003 Sum_probs=83.1
Q ss_pred CcceEEEEe---CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeCC-------eEEEEccC
Q 043572 225 DGVKTMVWL---NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDN-------VGVFVDAH 293 (997)
Q Consensus 225 ~~~~~l~~~---~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~-------~g~fv~~~ 293 (997)
..|..|+|. ++.|+|+.. .....+|++++....+.+. ...|.-..+..++..|.+.|. ..+.++.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~---~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG---LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC---CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC---CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 356788887 356888876 6677788877776666652 235665566545554444331 34446667
Q ss_pred CCcccc-ccccCCCCCeEEEeC--cEEEEEE--CCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEc--
Q 043572 294 GQPVGG-SLVFRKSPDAVGELS--MYVVVLR--GGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVAT-- 366 (997)
Q Consensus 294 G~~~r~-~i~w~~~P~~i~~~~--PYll~~~--~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s-- 366 (997)
|..... .+.=-..|..++++. -+|++.. .+.|.+++..++...+....+....+..+.-+ ..|+.+|++.
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~---pdG~~lyv~d~~ 290 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH---PSGNYAYIVVVN 290 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC---TTSSEEEEEETT
T ss_pred CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc---CCCCEEEEEECC
Confidence 765422 222234688888864 4666543 56788888877655444444332111223222 1346455553
Q ss_pred CCeEEEEeec
Q 043572 367 PTKVICYQKV 376 (997)
Q Consensus 367 ~~~V~~l~~~ 376 (997)
.+.|+++..-
T Consensus 291 ~~~I~~~~~d 300 (430)
T 3tc9_A 291 QHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 5778887643
No 282
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=61.08 E-value=21 Score=30.23 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
-..++..|++++|+...+..-...+.. ..++...|..++..++|++|+..|.+.
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 11 GNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456788999999999997754322211 234556788899999999999999874
No 283
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.76 E-value=5 Score=33.37 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=25.2
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.....++-..|..+|..|+.=
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C 46 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTC 46 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCC
T ss_pred CCcCccCCcccccCceEEEECccccccccCch
Confidence 46899999999864444566788999999874
No 284
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=60.73 E-value=2.2 Score=35.65 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCcCccccCccCCccEEEcCCCeE-EEeccccccCcccCCCC-CCCCC
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQGESTSITG-RDFKK 985 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~~~~~~t~-~~f~~ 985 (997)
+..|.+|.....+ .+..||||. +-..|.... ..||.+ ..+..
T Consensus 18 ~~~C~IC~~~~~~--~v~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN--STFCPCGHTVCCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC--EEEETTCBCCBCHHHHTTC--SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc--EEEECCCCHHHHHHHHHhc--CcCCCCCchhhC
Confidence 4579999877665 445799998 889999876 369944 34433
No 285
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=60.28 E-value=1.5e+02 Score=30.19 Aligned_cols=122 Identities=9% Similarity=0.044 Sum_probs=71.2
Q ss_pred EEEEEeC-CeEEEEEeEecCCcceEEEEe--CCEEEEEEC--CcEEEEEec-CCcc---eeeecCCCCCCCCceEEcCCC
Q 043572 206 VLIELVN-GSFVILKEIQCMDGVKTMVWL--NDSIIVGTV--NGYSLFSCV-TGQS---GVIFTLPDVSCPPMLKLLSKE 276 (997)
Q Consensus 206 ~i~~~~~-~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~--~~y~lidl~-~g~~---~~l~~~~~~~~~p~i~~~~~~ 276 (997)
.||.+.. +.+..+.. ....+..++|. ++.+ ++.. .....+|+. +|.. ..++ .. ....|.-..+..+
T Consensus 154 ~l~~~~~~g~~~~~~~--~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~~ 228 (296)
T 3e5z_A 154 WVFRLAPDGTLSAPIR--DRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDAG 228 (296)
T ss_dssp EEEEECTTSCEEEEEC--CCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBTT
T ss_pred EEEEECCCCCEEEeec--CCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECCC
Confidence 4555554 33433221 22356788887 3446 6644 468888986 5654 3445 22 2223444445545
Q ss_pred CeEEEEeCCeEEEEccCCCccccccccCCCCCeEEEeCc---EEEEEECCeEEEEecCCC
Q 043572 277 QKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSM---YVVVLRGGKMELYHKKSG 333 (997)
Q Consensus 277 ~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P---Yll~~~~~~ieI~~~~~~ 333 (997)
+.+.++.++....++.+|...+ .+.-+..|.++++..| +|.+-+.+.+--+...+.
T Consensus 229 G~l~v~~~~~v~~~~~~g~~~~-~~~~~~~~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~ 287 (296)
T 3e5z_A 229 GLIWASAGDGVHVLTPDGDELG-RVLTPQTTSNLCFGGPEGRTLYMTVSTEFWSIETNVR 287 (296)
T ss_dssp SCEEEEETTEEEEECTTSCEEE-EEECSSCCCEEEEESTTSCEEEEEETTEEEEEECSCC
T ss_pred CCEEEEcCCeEEEECCCCCEEE-EEECCCCceeEEEECCCCCEEEEEcCCeEEEEEcccc
Confidence 5777777666667888887653 3333333888888655 677777777666666554
No 286
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=60.15 E-value=25 Score=34.71 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+......++..|++++|+..++......+.. ..+....|..++..++|++|+..|.+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~ 83 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKA 83 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444556778899999999887764322211 234455677788899999999998763
No 287
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.14 E-value=3.4 Score=33.47 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCcCccccCccCC--ccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGT--KLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.. ..-++-..|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C 38 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNC 38 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEe
Confidence 4689999999985 3233445778899988874
No 288
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=59.96 E-value=42 Score=31.03 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
....+...|++++|+..++......+.. ..+....|..++..++|++|.++|.+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~ 67 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTGAVDRGTELLER 67 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456778999999999987754322111 23455677778889999999998876
No 289
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=59.37 E-value=3.2e+02 Score=34.05 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=39.7
Q ss_pred eeeEEeecCCe-EEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 33 SISPISDCQVL-IYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 33 ~I~ci~~~~~~-l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
.+.++...++. +|.+..+|..-.|.+...... ...+. ....+......|+...++. ..++.
T Consensus 205 ~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~-------------~~~l~----~~~~~~~~~~SpDG~~la~-~~~~~ 266 (1045)
T 1k32_A 205 HVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD-------------LRKHT----SFTDYYPRHLNTDGRRILF-SKGGS 266 (1045)
T ss_dssp CCEEEEEETTEEEEEECTTSSCEEEEEETTSCS-------------CEECC----CCCSSCEEEEEESSSCEEE-EETTE
T ss_pred cccceEEeCCEEEEEEeccCceEEEEEeCCCCc-------------ceEec----CCCCcceeeEcCCCCEEEE-EeCCE
Confidence 45566655555 456777787777776543210 00111 1123445566788876766 68999
Q ss_pred EEEeec
Q 043572 112 LFLTDS 117 (997)
Q Consensus 112 l~~~~l 117 (997)
|+++++
T Consensus 267 i~~~d~ 272 (1045)
T 1k32_A 267 IYIFNP 272 (1045)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 999987
No 290
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=58.94 E-value=10 Score=35.64 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=42.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
..++..|++++|+..++..-.-++... ..+...|..++..++|++|+..|.+.-.++|.
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~P~~~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYDFYNV----DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 568899999999999987643222211 24455788899999999999999874224443
No 291
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=58.68 E-value=63 Score=35.57 Aligned_cols=108 Identities=5% Similarity=-0.087 Sum_probs=71.4
Q ss_pred eCCEEEEEEC------CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe-----------CCeEEEEccCCC
Q 043572 233 LNDSIIVGTV------NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV-----------DNVGVFVDAHGQ 295 (997)
Q Consensus 233 ~~~~l~vg~~------~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~-----------~~~g~fv~~~G~ 295 (997)
.++.++|+.. +...+||..+++...-++.+. .|.+..-+++..+.++. ++...++|....
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL 119 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---CCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 3667888865 368899999888877777753 35544444444455553 345666776433
Q ss_pred ccccccccC--------CCCCeEEEe--CcEEEEEE---CCeEEEEecCCCceEEEEecCC
Q 043572 296 PVGGSLVFR--------KSPDAVGEL--SMYVVVLR---GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 296 ~~r~~i~w~--------~~P~~i~~~--~PYll~~~---~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
....+|... ..|..+++. .-|+++.. .+.|.|.++.+++.+++|++++
T Consensus 120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 222344433 257788876 34666654 4789999999999999998865
No 292
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=58.08 E-value=1.6e+02 Score=29.69 Aligned_cols=144 Identities=11% Similarity=0.047 Sum_probs=76.3
Q ss_pred CcceEEEEeC-CEEEEEEC--CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC--CeEEEEccCCCcccc
Q 043572 225 DGVKTMVWLN-DSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD--NVGVFVDAHGQPVGG 299 (997)
Q Consensus 225 ~~~~~l~~~~-~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~--~~g~fv~~~G~~~r~ 299 (997)
..|..+.+.. +.++++.. .....+|. +|.... +........|.-..+..++.+.++.. +....++.+|...+-
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~ 223 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEY 223 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred CCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEE
Confidence 3567887764 45888874 46777887 565554 32222223454444544456666642 345556776665432
Q ss_pred cccc-CCCCCeEEEeCc-EEEEEE--CCeEEEEecCCCceEEEEecCCCC-CCCceecccccCCCcEEEEEcCCeEEEEe
Q 043572 300 SLVF-RKSPDAVGELSM-YVVVLR--GGKMELYHKKSGICVQAVTFGGEG-GGQCIATDEECGAGKLLVVATPTKVICYQ 374 (997)
Q Consensus 300 ~i~w-~~~P~~i~~~~P-Yll~~~--~~~ieI~~~~~~~lvQ~i~~~~~~-~~~~i~~~~~~~~g~~~~v~s~~~V~~l~ 374 (997)
.+.- ...|..+++... .|.+.. .+.|.+++. ++.. +.+.++... ....+..+ ..|. +++++.+.|+++.
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~---~~g~-l~v~~~~~i~~~~ 297 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFG---KDGS-VWFALKCKIGKLN 297 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEEC---TTSC-EEEECSSEEEEEE
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeC---CCCC-EEEEccCceEEeC
Confidence 1111 234677777633 455444 567888877 4443 344444211 11223322 2345 5566544788876
Q ss_pred ec
Q 043572 375 KV 376 (997)
Q Consensus 375 ~~ 376 (997)
+.
T Consensus 298 p~ 299 (300)
T 2qc5_A 298 LN 299 (300)
T ss_dssp EC
T ss_pred CC
Confidence 63
No 293
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=57.99 E-value=14 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..+...|++++|+..++..-...+.. ..++...|..++..++|++|..+|.+.
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56778999999999987754322111 134556788889999999999998763
No 294
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=57.92 E-value=98 Score=34.03 Aligned_cols=53 Identities=6% Similarity=-0.002 Sum_probs=36.5
Q ss_pred EeCCeEEEEEeEecCC--------cceEEEEe--CCEEEEEEC---CcEEEEEecCCcceeeecCC
Q 043572 210 LVNGSFVILKEIQCMD--------GVKTMVWL--NDSIIVGTV---NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 210 ~~~~~~~~~kei~~~~--------~~~~l~~~--~~~l~vg~~---~~y~lidl~~g~~~~l~~~~ 262 (997)
|.....+..+++.++. .|..+.+. |..++|+.. +...+||+.++++..-++.+
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence 4434456667777654 46667766 556999863 57899999999876666654
No 295
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=57.84 E-value=2.8 Score=40.70 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=34.8
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~ 986 (997)
+.+.-.|++|...+... +..||||.|+..|+.... ...|| -+..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p--v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA--VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc--EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44667999999988764 336999999999998752 23799 44444443
No 296
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=57.67 E-value=13 Score=33.41 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..++..|+|++|+...+..-..++.. ..++...|..++..++|++|++.|.+.
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 56889999999999997754322211 234556788889999999999999763
No 297
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.39 E-value=6.7 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=23.5
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.... +...|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~--~~a~~~~~H~~CF~C 34 (70)
T 2d8z_A 5 SSGCVQCKKPITTGG--VTYREQPWHKECFVC 34 (70)
T ss_dssp CCBCSSSCCBCCSSE--EESSSSEEETTTSBC
T ss_pred CCCCcccCCeeccce--EEECccccCCCCCcc
Confidence 468999999998643 556788999999874
No 298
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=56.08 E-value=24 Score=31.49 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=38.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhcch---hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGE---MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~---~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.-++..|+|++|+..++..-.-.+ .....+..++...|..+...++|++|++.|.+
T Consensus 50 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 50 AVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456778888888887766432111 11123456777788888889999999999876
No 299
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=55.94 E-value=68 Score=31.32 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=39.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+..++......+. ...++...|..++..++|++|..+|.+
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSS----AATAYYGAGNVYVVKEMYKEAKDMFEK 116 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45677899999999999876432211 123455677888889999999999876
No 300
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.95 E-value=20 Score=31.47 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=40.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-..++..|+|++|+...+..-...+.. ..++...|..++..++|++|+..|.+.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4467889999999999997754322111 245566788889999999999999763
No 301
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=54.89 E-value=6.7 Score=34.09 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=21.5
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.....++...|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C 36 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRC 36 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCC
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcc
Confidence 45788888888643344455677888877663
No 302
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.73 E-value=8.3 Score=31.49 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=24.1
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|..... +...|..+|..|+.=
T Consensus 9 ~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C 39 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEK-VSSLGKDWHKFCLKC 39 (76)
T ss_dssp CCBCTTTCCBCCTTTE-EEETTEEEETTTCBC
T ss_pred CCCCcCCCCEeECCeE-EEECCeEeeCCCCCC
Confidence 4689999999985444 345789999999874
No 303
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=54.62 E-value=21 Score=31.09 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=38.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++..-...+.. ..++...|..++..|+|++|+..|.+
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678899999999987754322211 23455678888999999999998876
No 304
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=54.55 E-value=4.5 Score=41.56 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=31.3
Q ss_pred CCCcCccccCccCCccEEEcC-CCeEEEecccccc----CcccCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQ----GESTSITGRD 982 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~----~~~~~~t~~~ 982 (997)
.-..|.+|+.-+... ...| |++.+|.+|...+ ....||.|..
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 467899999988753 3345 8999999999764 3457995544
No 305
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.54 E-value=5.9 Score=32.75 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|... ++...|..+|..|+.=
T Consensus 14 ~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C 44 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV--FVKLRDRHRHPECYVC 44 (79)
T ss_dssp CCCCCSSSCCCCCSS--CEECSSCEECTTTTSC
T ss_pred CCCccccCCCCccCc--EEEECcceeCcCcCee
Confidence 457999999999864 3455678999999873
No 306
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=54.26 E-value=7.3 Score=32.31 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=23.6
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|..... +...|..+|..|++=
T Consensus 6 ~~~~C~~C~~~I~~~~~-~~a~~~~~H~~CF~C 37 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEE-VQCDGRSFHRCCFLC 37 (81)
T ss_dssp --CBCSSSCCBCSSTTE-EEETTEEEESSSEEC
T ss_pred CCCcCcCcCccccCcee-EEeCCcccccccCcc
Confidence 35789999999975443 455789999999874
No 307
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=54.18 E-value=24 Score=31.56 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..++..|+|++|+...+..-.-.+.. -.++...|..++..++|++|++.|.+.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 45789999999999987754322111 124555778899999999999998763
No 308
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=53.60 E-value=2.7e+02 Score=30.94 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=41.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
...++..|+|++|+...+..-...+.. ...+...|..++..|+|++|++.|.+.-..+|.
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 467788999999999998765322211 134556778888999999999999863223444
No 309
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=53.26 E-value=31 Score=30.10 Aligned_cols=59 Identities=14% Similarity=-0.008 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 379 EEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 379 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
-.....++..|++++|+..++..-...+.. ......+...|..++..++|++|...|.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345567889999999999998764322111 11124555678889999999999999876
No 310
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=52.51 E-value=2e+02 Score=29.05 Aligned_cols=141 Identities=15% Similarity=0.146 Sum_probs=78.1
Q ss_pred EEEEEE---CceEEEEEEeCCeEEEEEeEecC--CcceEEEEeC-CEEEEEEC--CcEEEEEecCCcceeeecCCCCCCC
Q 043572 196 VFAVII---GKRLVLIELVNGSFVILKEIQCM--DGVKTMVWLN-DSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 196 ~l~Va~---kkki~i~~~~~~~~~~~kei~~~--~~~~~l~~~~-~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
.+.|+. ..+|.+|.. .+.+. +.+..+ ..|..+++.. +.++|+.. ....++|.+ |.....+........
T Consensus 90 ~l~v~~~~~~~~i~~~d~-~g~~~--~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYNQ-YGQFV--RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF 165 (286)
T ss_dssp EEEEEECGGGCEEEEECT-TSCEE--EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred eEEEEcCCCCCEEEEECC-CCcEE--EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCC
Confidence 355655 456666652 22222 233222 3578888874 35888754 467778853 544444433222224
Q ss_pred CceEEcCCCCeEEEEe--CCeEEEEccCCCccccccccC---CCCCeEEEeCc-EEEEEE--CC-eEEEEecCCCceEEE
Q 043572 268 PMLKLLSKEQKVLLLV--DNVGVFVDAHGQPVGGSLVFR---KSPDAVGELSM-YVVVLR--GG-KMELYHKKSGICVQA 338 (997)
Q Consensus 268 p~i~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~i~w~---~~P~~i~~~~P-Yll~~~--~~-~ieI~~~~~~~lvQ~ 338 (997)
|.-..+..++.++++. ++....++.+|...+ ++.-. ..|..+++..- .+++.. .+ .|.+++. ++..+++
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~ 243 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR-QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISA 243 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE-EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEE-EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEE
Confidence 5545555455766663 455666787776432 22112 45778888632 444443 44 8999984 5777887
Q ss_pred EecC
Q 043572 339 VTFG 342 (997)
Q Consensus 339 i~~~ 342 (997)
+...
T Consensus 244 ~~~~ 247 (286)
T 1q7f_A 244 LESK 247 (286)
T ss_dssp EEES
T ss_pred Eccc
Confidence 7654
No 311
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=52.42 E-value=2.2e+02 Score=29.49 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTST 165 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (997)
....+..+.+-++.+.+++...++.|++|+...-+...-. .....+..++.++
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-------------------------- 96 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-------------------------- 96 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT--------------------------
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC--------------------------
Q ss_pred cchhhhhccCccccCCccchhcccccCCceEEEEEEC----ceEEEEEEeCCeEE-EEEeEecCCcceEEEEeCCE-EEE
Q 043572 166 GQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG----KRLVLIELVNGSFV-ILKEIQCMDGVKTMVWLNDS-IIV 239 (997)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k----kki~i~~~~~~~~~-~~kei~~~~~~~~l~~~~~~-l~v 239 (997)
++...++.... ..|.+|....+.+. ..........+..+.+..+. +++
T Consensus 97 --------------------------dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v 150 (333)
T 2dg1_A 97 --------------------------DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF 150 (333)
T ss_dssp --------------------------TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE
T ss_pred --------------------------CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE
Q ss_pred EEC--------CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC---CeEEEEcc--CCCcc-----cccc
Q 043572 240 GTV--------NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD---NVGVFVDA--HGQPV-----GGSL 301 (997)
Q Consensus 240 g~~--------~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~---~~g~fv~~--~G~~~-----r~~i 301 (997)
+.. .....+|..++....+. .....|.-..+..++..|...+ +....++. +|... +...
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred EeccccccCCCceEEEEeCCCCEEEEee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Q ss_pred ccCC--CCCeEEEeCc---EEEEEECCeEEEEecCCCceEEEEecCCC------CCCCceecccccCCCcEEEEEcCC--
Q 043572 302 VFRK--SPDAVGELSM---YVVVLRGGKMELYHKKSGICVQAVTFGGE------GGGQCIATDEECGAGKLLVVATPT-- 368 (997)
Q Consensus 302 ~w~~--~P~~i~~~~P---Yll~~~~~~ieI~~~~~~~lvQ~i~~~~~------~~~~~i~~~~~~~~g~~~~v~s~~-- 368 (997)
.+.. .|..+++..- |+.....+.|.+++. ++..++++..+.. .+....++. +|+.+|+++..
T Consensus 228 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~----dg~~L~v~~~~g~ 302 (333)
T 2dg1_A 228 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP----GTNQLIICSNDIE 302 (333)
T ss_dssp ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT----TSCEEEEEEECGG
T ss_pred ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC----CCCEEEEEeCccC
Q ss_pred -----eEEEEee
Q 043572 369 -----KVICYQK 375 (997)
Q Consensus 369 -----~V~~l~~ 375 (997)
.||++..
T Consensus 303 ~~~~~~l~~~~~ 314 (333)
T 2dg1_A 303 MGGGSMLYTVNG 314 (333)
T ss_dssp GTCCEEEEEEEC
T ss_pred CCCCceEEEEec
No 312
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=52.33 E-value=22 Score=30.18 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..++..|++++|+..++..-...+.. ...+...|..++..++|++|.+.|.+
T Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55788999999999998764322111 12455678888999999999999876
No 313
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=51.81 E-value=26 Score=31.00 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+......++..|++++|+..++..-...+.. ...+...|..++..+++++|+..|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445678999999999999998764322211 124456778888999999999999763
No 314
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.85 E-value=5.9 Score=34.02 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=26.7
Q ss_pred CCCcCccccCccCCccEEE-cCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFAM-YPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v-~p~g~~~H~~C~~~~ 972 (997)
+...|++|-..+....+.. -||||.|...|...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~ 38 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY 38 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHH
Confidence 3457999998876655544 479999999998876
No 315
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=50.48 E-value=25 Score=31.87 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...++..|++++|+..++..-...+... ..+...|..++..++|++|+..|.+.
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4668899999999999987543222111 23445778889999999999999763
No 316
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.46 E-value=9.8 Score=31.04 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=15.0
Q ss_pred cCccccCccCCccEEEcCCCeEEEecccc
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
+|+.|+++|..... +...|..+|..|+.
T Consensus 2 ~C~~C~~~I~~~~~-v~a~~~~~H~~CF~ 29 (76)
T 1iml_A 2 KCPKCDKEVYFAER-VTSLGKDWHRPCLK 29 (76)
T ss_dssp BCTTTSSBCCGGGE-EEETTEEEETTTCB
T ss_pred cCCCCCCEEECceE-EEECCccccCCCCC
Confidence 46666666653333 22335666666654
No 317
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=50.40 E-value=1.9e+02 Score=28.24 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=39.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...+...|++++|+..++......+.. ..++...|..++..++|++|.++|.+.
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEA 131 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778999999999997764322111 234556778888999999999999874
No 318
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.24 E-value=6.5 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=26.9
Q ss_pred cEEEcCCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 934 HVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 934 ~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
.+.+....+|+.|+++|....+ +...|..+|..|+.=
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~~-v~a~~~~wH~~CF~C 45 (80)
T 2dj7_A 9 PIKIRGPSHCAGCKEEIKHGQS-LLALDKQWHVSCFKC 45 (80)
T ss_dssp CCCCSSCSCCTTTCCCCSSSCC-EEETTEEECTTTCBC
T ss_pred CcCCCCCCCCcCcCCeeCCCeE-EEECCcccccccCCc
Confidence 3345667899999999975333 334678999999874
No 319
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=50.12 E-value=5.5 Score=31.55 Aligned_cols=30 Identities=7% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|... ++...|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C 34 (66)
T 1nyp_A 5 VPICGACRRPIEGR--VVNAMGKQWHVEHFVC 34 (66)
T ss_dssp CCEETTTTEECCSC--EECCTTSBEETTTCBC
T ss_pred CCCCcccCCEecce--EEEECccccccCcCEE
Confidence 46899999999843 3567788999999874
No 320
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=49.78 E-value=19 Score=32.33 Aligned_cols=53 Identities=9% Similarity=-0.035 Sum_probs=39.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-+...|++++|+..++..-.-++.. ...+...|..++..++|++|++.|.+.
T Consensus 55 ~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 55 ACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56778999999999997754322111 134556788899999999999999863
No 321
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=49.71 E-value=92 Score=37.46 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=39.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..+.+.|++++|+...++.-.-.+.. -..+...|..+...|+|++|+++|.+.
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678999999999997754321111 234556788899999999999999873
No 322
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=49.51 E-value=2.5e+02 Score=29.32 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=65.8
Q ss_pred cceEEEEeC--CEEEEEEC---CcEEEEEecCCcceeeecCCCCC--------CCCceEEcCCC-CeEEEEe--CCeEEE
Q 043572 226 GVKTMVWLN--DSIIVGTV---NGYSLFSCVTGQSGVIFTLPDVS--------CPPMLKLLSKE-QKVLLLV--DNVGVF 289 (997)
Q Consensus 226 ~~~~l~~~~--~~l~vg~~---~~y~lidl~~g~~~~l~~~~~~~--------~~p~i~~~~~~-~e~Ll~~--~~~g~f 289 (997)
.|..+++.. +.|+|+.. ....++| .+|.....+...+.+ ..|.-..+..+ +.+.++. ++....
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 578888884 56888863 3566777 346554444321111 23544555433 5666663 445666
Q ss_pred EccC-CCcccc--ccccCCCCCeEEEeCcEEEEEEC---------CeEEEEecCCCceEEEEe
Q 043572 290 VDAH-GQPVGG--SLVFRKSPDAVGELSMYVVVLRG---------GKMELYHKKSGICVQAVT 340 (997)
Q Consensus 290 v~~~-G~~~r~--~i~w~~~P~~i~~~~PYll~~~~---------~~ieI~~~~~~~lvQ~i~ 340 (997)
++.+ |...+. .-.....|..+++..-++++... ..|.+.+..++.+++++.
T Consensus 223 ~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 223 FKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp EETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred EECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 7776 775532 11223445666666544444432 367788888999998874
No 323
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.11 E-value=8.1 Score=32.92 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=26.2
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
.....+|+.|+++|..... +-..|..+|..|+.=
T Consensus 12 ~~~~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C 45 (91)
T 2d8y_A 12 APARETCVECQKTVYPMER-LLANQQVFHISCFRC 45 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSE-EECSSSEEETTTCBC
T ss_pred CCCCCcCccCCCccCCcee-EEECCCEECCCCCee
Confidence 3456799999999986444 356788999999874
No 324
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=49.07 E-value=9.8 Score=32.99 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEecccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
..+|+.|+++|.....++--.|..+|..|..
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~ 96 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFS 96 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEESSSCEEETTTCC
T ss_pred CCccccCCCccccCCeEEEeCCcchHHhCCC
Confidence 3578888888875433444567788888865
No 325
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.94 E-value=9.6 Score=30.48 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|.... +...|..+|..|+.=
T Consensus 4 ~~~~C~~C~~~I~~~~--~~a~~~~~H~~CF~C 34 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRV--IKAMNNSWHPECFRC 34 (70)
T ss_dssp CSSBCSSSCCBCCSCC--EEETTEEECTTTSBC
T ss_pred CCCcCccCCCEecceE--EEECcccccccCCEe
Confidence 4578999999998543 455688999999874
No 326
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.52 E-value=7.6 Score=30.99 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.... +-..|..+|..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~--~~a~~~~~H~~CF~C 34 (69)
T 2cur_A 5 SSGCVKCNKAITSGG--ITYQDQPWHADCFVC 34 (69)
T ss_dssp CCCCSSSCCCCCTTC--EEETTEEECTTTTBC
T ss_pred cCCCcccCCEeCcce--EEECccccccCcCEE
Confidence 468999999997643 344688999998763
No 327
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=48.47 E-value=12 Score=29.41 Aligned_cols=31 Identities=13% Similarity=0.405 Sum_probs=22.9
Q ss_pred CcCccccCccCCccEEEcCCCeEEE--eccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVC--YKCYRR 971 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H--~~C~~~ 971 (997)
.+|+.|+++|....-.+-..|..+| ..|+.=
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C 35 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLC 35 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBC
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEEC
Confidence 5799999999853223445688999 888764
No 328
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=48.38 E-value=19 Score=34.19 Aligned_cols=59 Identities=15% Similarity=-0.066 Sum_probs=36.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
..+...|++++|+...+..-...+.. ..++...|..++..|+|++|++.|.+.=.+||.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 115 LVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 44667778888877776653322111 134455677778888888888888763123443
No 329
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=48.31 E-value=24 Score=29.52 Aligned_cols=54 Identities=22% Similarity=0.051 Sum_probs=39.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...+...|++++|+..++..-...+.. ..+....|..++..++|++|...|.+.
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 456778999999999997754322111 124456778889999999999999774
No 330
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.14 E-value=4.7 Score=33.75 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|.....+ ...|..+|..|++=
T Consensus 14 ~~~~C~~C~~~I~~~e~v-~a~~~~wH~~CF~C 45 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL-CVNGHFFHRSCFRC 45 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC-CBTTBCCBTTTCBC
T ss_pred CCCCCcccCCCcccceEE-EECCCeeCCCcCEE
Confidence 457899999999653332 25688899988774
No 331
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=47.94 E-value=10 Score=31.93 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCCcCccccCccCC----ccEEEcCCCeEEEeccccccCcccCCCCC
Q 043572 939 DESLCDSCHARLGT----KLFAMYPDDTIVCYKCYRRQGESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~----~~f~v~p~g~~~H~~C~~~~~~~~~~t~~ 981 (997)
...+|.+|+|.++. ..+--.=|+..+|..|.... ..+|+-|+
T Consensus 37 ~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~-~~eC~lG~ 82 (84)
T 1r79_A 37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL-LTKCSGPS 82 (84)
T ss_dssp TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC-CSCBCCSC
T ss_pred CCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc-cCcCCCCC
Confidence 35799999999875 23434457999999998876 45677554
No 332
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=47.92 E-value=32 Score=28.97 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.....++..|++++|+..++..-...+.. ..+....|..++..++|++|...+.+.
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34567889999999999998764322211 234555777888899999999998763
No 333
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.73 E-value=4.5 Score=33.70 Aligned_cols=30 Identities=20% Similarity=0.575 Sum_probs=20.7
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
.+|+.|+++|.....++-..|..+|..|+.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~ 45 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGCFR 45 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTTSB
T ss_pred CcCccCCCccccCcEEEEeCCccccccCCe
Confidence 578888888874334445567778887766
No 334
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=47.61 E-value=82 Score=35.20 Aligned_cols=108 Identities=5% Similarity=-0.121 Sum_probs=71.9
Q ss_pred EeCCEEEEEEC------CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe-----------CCeEEEEccC-
Q 043572 232 WLNDSIIVGTV------NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV-----------DNVGVFVDAH- 293 (997)
Q Consensus 232 ~~~~~l~vg~~------~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~-----------~~~g~fv~~~- 293 (997)
+.++.++|+.. +...+||+.++++..-++.+. .|-+..-+++..+.++. ++...++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~---~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF---LPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC---CCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 35567888866 578999999998888888764 35443334444455553 3455667764
Q ss_pred CCccccccccC--------CCCCeEEEe--CcEEEEEE---CCeEEEEecCCCceEEEEecCC
Q 043572 294 GQPVGGSLVFR--------KSPDAVGEL--SMYVVVLR---GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 294 G~~~r~~i~w~--------~~P~~i~~~--~PYll~~~---~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++.. .+|... ..|..+++. .-|+++.. .+.|.|.++.++..+.+|++++
T Consensus 159 ~~vv-~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g 220 (426)
T 3c75_H 159 FLPI-ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD 220 (426)
T ss_dssp CCEE-EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred CcEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence 4433 244332 457778775 34777654 4689999999999999999864
No 335
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.40 E-value=35 Score=30.35 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=43.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.....++..|++++|+...+..-...+. ......++...|..++..++|++|+..|.+.
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3457788999999999999886532221 1123456666788889999999999998763
No 336
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=46.75 E-value=21 Score=33.03 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-++..|+|++|+..++..-.-.+.. -..+...|..++..++|++|+..|.+.
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 44678899999999887754322211 235566788888889999999988763
No 337
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=46.68 E-value=30 Score=32.16 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=40.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
....++..|+|++|+..++..-...+.. ..++...|..++..++|++|+..|.+.
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3467889999999999997754322111 235566788899999999999999763
No 338
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=45.37 E-value=11 Score=34.28 Aligned_cols=31 Identities=19% Similarity=0.566 Sum_probs=24.3
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|... .++...|..+|..|++=
T Consensus 61 ~~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C 91 (123)
T 2l4z_A 61 WKRCAGCGGKIADR-FLLYAMDSYWHSRCLKC 91 (123)
T ss_dssp CSBBSSSSSBCCSS-SEEEETTEEEETTTSBC
T ss_pred CCcCcCCCCCcCCc-EEEEeCCcEEcccccCc
Confidence 46899999999864 33445789999999874
No 339
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=45.27 E-value=34 Score=31.52 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=39.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...++..|++++|+..++..-...+... ..+...|..++..++|++|+..|.+.
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568899999999999977543222111 23345778889999999999999873
No 340
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.95 E-value=9.6 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|... .+-..|..+|..|+.=
T Consensus 15 ~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C 44 (80)
T 2cuq_A 15 APRCARCSKTLTQG--GVTYRDQPWHRECLVC 44 (80)
T ss_dssp SCCCTTTCCCCCSC--CEESSSSEECTTTCBC
T ss_pred CCcCCCCCCEecCc--EEEECCchhhhhhCCc
Confidence 46899999999765 3456788999999874
No 341
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=43.88 E-value=38 Score=29.88 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=41.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
....++..|+|++|+...+..-...+.. ..++...|..++..++|++|+..|.+.
T Consensus 15 ~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 15 QGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4467889999999999987754322211 235666788899999999999998763
No 342
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=43.82 E-value=43 Score=32.72 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHH------------HHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKE------------MLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~------------~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
.+...++..|++++|+..++..-...+...+ ....+....|..++..|+|++|+..|.+.=.++|.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3456788999999999999775432211111 01123334788899999999999999763223443
No 343
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=43.75 E-value=35 Score=29.65 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=41.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.....++..|++++|+..++..-...+.. ..+....|..++..++|++|+.+|.+.
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34567889999999999998764322211 234556788889999999999998763
No 344
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.46 E-value=10 Score=32.16 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|.... +...|..+|..|+.=
T Consensus 24 ~~~~C~~C~~~I~~~~--~~a~~~~~H~~CF~C 54 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAV--VKARDKYRHPECFVC 54 (89)
T ss_dssp SCCBCTTTCCBCCSCC--EESSSCEECTTTCCC
T ss_pred cCCCcccCCCEecccE--EEECCceECccCCEe
Confidence 4568999999998632 455788999999874
No 345
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.44 E-value=21 Score=28.94 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.4
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccCC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSI 978 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~ 978 (997)
=+|..|+++|....|+. .+|.++...|..+.....|-
T Consensus 36 F~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~f~~~C~ 72 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLT-QNKEIFCQKCGSGMDTDISG 72 (76)
T ss_dssp CBCTTTCCBCSSSCEEE-ETTEEEETTTTCCCCCCSSS
T ss_pred CChhhCCCcCCCCceEe-ECCEEECHHHhhhhhCCcCC
Confidence 38999999998777755 58899999998876444443
No 346
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.14 E-value=94 Score=28.54 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=23.3
Q ss_pred cCCCcCccccCccCC---ccEEEcCCCeEEEeccccc
Q 043572 938 NDESLCDSCHARLGT---KLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~---~~f~v~p~g~~~H~~C~~~ 971 (997)
..++.|+.|++++|. +.....-|.+-|...|...
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 578999999999963 3344445666666666653
No 347
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=42.85 E-value=2.2e+02 Score=26.84 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=40.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
....++..|++++|+..++......+.. ..++...|..++..++|++|.++|.+.
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3466788999999999997754322111 234556778888899999999998763
No 348
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=42.56 E-value=14 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCcCccccCccCC--ccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGT--KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~~ 972 (997)
..+.|.+|+++|+- ..+--.-|+.++|..|....
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~~ 53 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRC 53 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSCEECGGGGGGS
T ss_pred CCcccccccCEEEEeeEeeECCCCCCeEchhHhhcC
Confidence 45899999999953 45666788999999997654
No 349
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.34 E-value=11 Score=31.25 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|... ++-..|..+|..|+.=
T Consensus 14 ~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C 44 (81)
T 2dlo_A 14 TLEKCATCSQPILDR--ILRAMGKAYHPGCFTC 44 (81)
T ss_dssp SCCBCTTTCCBCCSC--CEEETTEEECTTTCBC
T ss_pred CCCccccCCCeecce--eEEECCccccHHhcCc
Confidence 457899999999854 3455789999988874
No 350
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=41.92 E-value=60 Score=27.09 Aligned_cols=54 Identities=17% Similarity=0.009 Sum_probs=39.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...+...|++++|+..++..-...+.. ..++...|..+...++|++|...|.+.
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 45 SAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355778999999999987764322211 234556778888999999999998763
No 351
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=41.57 E-value=41 Score=31.74 Aligned_cols=57 Identities=21% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...++..|++++|+..++..-...+.. ...+...|..++..|++++|...|.+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~ 65 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLAT 65 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456678999999999999997753221111 23455677888899999999999876
No 352
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.36 E-value=8.7 Score=31.81 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=28.1
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTS 977 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~ 977 (997)
-+|..|+++|....|++..+|.++...|..+.-...|
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C 78 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSS
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcC
Confidence 4799999999987787777889888888765433334
No 353
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.23 E-value=12 Score=31.78 Aligned_cols=31 Identities=6% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|... ++...|..+|..|+.=
T Consensus 24 ~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C 54 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP--FLVALGKSWHPEEFNC 54 (90)
T ss_dssp CCCBBSSSCCBCCSC--EEEETTEEECTTTCBC
T ss_pred CCCCCccCCCEecce--EEEECCccccccCCcc
Confidence 346899999999643 2345789999999874
No 354
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=40.62 E-value=3.6e+02 Score=28.58 Aligned_cols=168 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcccccccccCCCCcccccc
Q 043572 385 LLRKKDFKEAISLAEELECEGE--MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLV 462 (997)
Q Consensus 385 Ll~~~~~eeAl~L~~~~~~~~~--~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~~l~p~f~~~~~~~~~~~ 462 (997)
.+..|++++|+...+....-.. .+......++...|..++..++|++|+.++.++ ..+++...+....
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a-----l~~~~~~~~~~~~----- 180 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA-----LDIYQNHPLYSIR----- 180 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHTSTTCHHH-----
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-----HHHHHhCCCchhh-----
Q ss_pred cCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 043572 463 PRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTILVK 542 (997)
Q Consensus 463 ~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~~~~~~ 542 (997)
+...+..+.....-...- .+|...+..-+...++..-.. ..
T Consensus 181 ------------------~~~~~~~lg~~y~~~~~~--------------------~~A~~~~~~al~~~~~~~~~~-~~ 221 (378)
T 3q15_A 181 ------------------TIQSLFVIAGNYDDFKHY--------------------DKALPHLEAALELAMDIQNDR-FI 221 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred ------------------HHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHHHHHHcCCHH-HH
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCC------hhHHHHHHhhcCChHHHHHHHHH
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGH------LRTLAFLYASKGMSSKALAIWRV 609 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~------~~~L~~ly~~~~~~~~AL~il~~ 609 (997)
..+-..|-.+|...++.++-...+ +.+.+...+.+. +..|+.+|...|++++|++.+.+
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~--------~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHF--------QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH--------HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH--------HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
No 355
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=40.35 E-value=48 Score=28.92 Aligned_cols=54 Identities=11% Similarity=0.005 Sum_probs=39.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..-++..|++++|+..++..-.-++.. ...+...|..++..++|++|+..|.+.
T Consensus 45 a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 45 AAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 356778999999999997764322211 234556788889999999999999763
No 356
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=39.97 E-value=36 Score=28.36 Aligned_cols=56 Identities=20% Similarity=-0.078 Sum_probs=40.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFD-LHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~-~~f~~A~~~f~~~ 439 (997)
...+...|++++|+..++..-...+. ..-..+....|..++.. ++|++|.++|.+.
T Consensus 47 a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 47 GKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35577899999999999776432221 00123455678888999 9999999999763
No 357
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=39.61 E-value=43 Score=38.33 Aligned_cols=75 Identities=9% Similarity=0.119 Sum_probs=44.0
Q ss_pred eeeEEeec------CC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-c-CCCcceEEEeecccCc
Q 043572 33 SISPISDC------QV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-V-ADSPVESIFVLDDVGK 102 (997)
Q Consensus 33 ~I~ci~~~------~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~I~qi~vl~~~~~ 102 (997)
..|.|++. ++ -+||||++|.|+-..+.+....... ..-.+.+.+ + ...||..|.+.++.+.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~---------~~~~~eei~v~~~~~pI~~m~l~~~~~~ 475 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDL---------EEVLLEEMTVFREPTTISAMELSTKQQQ 475 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC--------------------CCEEECCSSSCCCCCEEEEETTTTE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCcccc---------ceEEEEEEeecCCCCccceEEEcCCCCE
Confidence 45666654 22 3999999999998777543210000 000111122 2 3579988988888887
Q ss_pred EEEEecCCeEEEeec
Q 043572 103 VLLLFCDQCLFLTDS 117 (997)
Q Consensus 103 lLv~l~d~~l~~~~l 117 (997)
|.| .+++.|.=.++
T Consensus 476 Lyv-~s~~~V~~vpv 489 (495)
T 1q47_A 476 LYI-GSTAGVAQLPL 489 (495)
T ss_dssp EEE-EBSSCEEEEES
T ss_pred EEE-EECCeEEEEEH
Confidence 777 88877665544
No 358
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=39.54 E-value=24 Score=41.96 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=40.3
Q ss_pred eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-c-CCCcceEEEeecccCcEEEEecCCeEEEeecC
Q 043572 43 LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-V-ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSL 118 (997)
Q Consensus 43 ~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~ 118 (997)
-+||||++|.|+-..+......... . .-.+.+.+ + ...||..|.+.++.+.|.| .++..|.=.++.
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~--------~-~~~leEi~v~~~~~pI~~L~ld~~~~~LYV-~t~~~V~kVPl~ 498 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDL--------E-EVLLEEMTVFREPTTISAMELSTKQQQLYI-GSTAGVAQLPLH 498 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------C--------E-EEEEEEEECSSSCCCCCEEEEETTTTEEEE-EBSSCEEEEESC
T ss_pred EEEEECCCCeEEEEEEcCCCCcccc--------c-eEEEEEEeecCCCceeeeEEEcCCCCEEEE-EECCEEEEEEhh
Confidence 4999999999997665443321000 0 00111111 1 4568999999999888888 888777666654
No 359
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=39.49 E-value=60 Score=33.38 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=43.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
-..++..|++++|+..++..-...+........++...|..++..++|++|.++|.+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466889999999999998764332222233456777788989999999999999876
No 360
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=39.31 E-value=75 Score=27.10 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=39.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...++..|++++|+...+..-...+.. ..++...|..++..++|++|..+|.+
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456788999999999997754322111 13455677888899999999999876
No 361
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=39.17 E-value=2.9e+02 Score=33.10 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.4
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
+..|+.+|...|++++|++.+.+...-
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l 38 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEV 38 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999987653
No 362
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=39.13 E-value=3.8e+02 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=30.2
Q ss_pred CeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEEee
Q 043572 323 GKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 323 ~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
+.|.|+++.+++.+++|+... . ..+.-. .+|+.+|+++.+.|..+..
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~-p--~~ia~s---pdg~~l~v~n~~~v~v~D~ 332 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD-A--LSMTID---QQRNLMLTLDGGNVNVYDI 332 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT-C--CEEEEE---TTTTEEEEECSSCEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCC-e--eEEEEC---CCCCEEEEeCCCeEEEEEC
Confidence 378899999999999998866 2 223211 1345566666566665543
No 363
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.90 E-value=4.6e+02 Score=29.37 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=57.0
Q ss_pred eEEEEEEC----ceEEEEEEeCC-----eE-EEEEeEecCCc-----ceEEEEeC--CEEEEEECCcE-EEEEecCCcce
Q 043572 195 NVFAVIIG----KRLVLIELVNG-----SF-VILKEIQCMDG-----VKTMVWLN--DSIIVGTVNGY-SLFSCVTGQSG 256 (997)
Q Consensus 195 ~~l~Va~k----kki~i~~~~~~-----~~-~~~kei~~~~~-----~~~l~~~~--~~l~vg~~~~y-~lidl~~g~~~ 256 (997)
..+|.|.| .|+.|.++... .| ++..++.+|.. |.+|.... +.|++-++.+| +++|++||...
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 35677777 68999998543 35 34566666542 47887775 45888899886 78999888543
Q ss_pred eeecCCCCCCCCceEEcCCCCeEEEEeC--CeEEE-EccCCCcc
Q 043572 257 VIFTLPDVSCPPMLKLLSKEQKVLLLVD--NVGVF-VDAHGQPV 297 (997)
Q Consensus 257 ~l~~~~~~~~~p~i~~~~~~~e~Ll~~~--~~g~f-v~~~G~~~ 297 (997)
-.- .++.+.-|+-|.+ .-|++ ||..|...
T Consensus 294 ~~n------------rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 294 YMN------------RISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EEE------------ECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred eee------------cccCCceEEecccCCCCcEEEEccCceEE
Confidence 222 2333445555532 23443 77777654
No 364
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=38.80 E-value=63 Score=28.76 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGE--MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~--~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++..-.-.. ........+....|..++..++|++|+.+|.+
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456678999999999876532111 11223445677789999999999999999876
No 365
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=38.76 E-value=3.6e+02 Score=28.07 Aligned_cols=91 Identities=10% Similarity=0.026 Sum_probs=46.3
Q ss_pred EEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEEC--CcEEEEEec--CC-cce--e-eecCCCCCCCCceEEcC
Q 043572 205 LVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTV--NGYSLFSCV--TG-QSG--V-IFTLPDVSCPPMLKLLS 274 (997)
Q Consensus 205 i~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~--~~y~lidl~--~g-~~~--~-l~~~~~~~~~p~i~~~~ 274 (997)
..||.+..+.+..+.+ -...+..++|. ++.++++.. +....+|++ +| ... . +.........|.-..+.
T Consensus 161 ~~l~~~~~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d 238 (326)
T 2ghs_A 161 GSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD 238 (326)
T ss_dssp EEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred eEEEEEeCCcEEEeeC--CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC
Confidence 4555555444444322 11345678887 345888764 467888885 56 321 1 22222112223333444
Q ss_pred CCCeEEEEe--CCeEEEEccCCCcc
Q 043572 275 KEQKVLLLV--DNVGVFVDAHGQPV 297 (997)
Q Consensus 275 ~~~e~Ll~~--~~~g~fv~~~G~~~ 297 (997)
.++.+.++. ++....++.+|...
T Consensus 239 ~~G~lwva~~~~~~v~~~d~~g~~~ 263 (326)
T 2ghs_A 239 AEGHIWNARWGEGAVDRYDTDGNHI 263 (326)
T ss_dssp TTSCEEEEEETTTEEEEECTTCCEE
T ss_pred CCCCEEEEEeCCCEEEEECCCCCEE
Confidence 445666664 34445567766644
No 366
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.96 E-value=28 Score=28.62 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=26.8
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTS 977 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~ 977 (997)
-+|..|+++|....|+. .+|.++...|..+.....|
T Consensus 44 F~C~~C~~~L~~~~f~~-~~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTC-QDSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp SBCTTTCCBCSSCCEEE-ETTEEEETTTSSCCGGGSS
T ss_pred CeecCCCCccCCCccEe-eCCEEECHHHHhhhcCCCC
Confidence 37999999999777743 4788999888876543334
No 367
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=37.73 E-value=32 Score=29.57 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=40.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECE---GEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~---~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..++..+.|+.|..-.+..-.. ..........++...|..++..|++++|+.++.+.
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5688899999998887664221 00000113467788999999999999999988763
No 368
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.66 E-value=12 Score=30.96 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=22.6
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
.+|+.|+++|... ++-..|..+|..|+.=
T Consensus 16 ~~C~~C~~~I~~~--~v~a~~~~wH~~CF~C 44 (81)
T 1v6g_A 16 TRCFSCDQFIEGE--VVSALGKTYHPDCFVC 44 (81)
T ss_dssp CBCTTTCCBCCSC--CEEETTEEECTTTSSC
T ss_pred CcCccccCEeccc--eEEECCceeCccCCcc
Confidence 5899999999853 2445688999998874
No 369
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=37.63 E-value=83 Score=26.73 Aligned_cols=55 Identities=7% Similarity=0.014 Sum_probs=39.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
....++..|++++|+...+..-...+.. ..+....|..++..++|++|++.|.+.
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 3466778999999999997754322111 234556778888899999999998763
No 370
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=37.58 E-value=58 Score=27.87 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=37.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++..-...+.. ...+...|..+...|++++|...|.+
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 27 KTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55778999999999987754322211 12445578888889999999999876
No 371
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=37.12 E-value=15 Score=29.30 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=23.7
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
+...|.+|++. ...+.---|...||..|+.-.
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~ 42 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPA 42 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTT
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCc
Confidence 56789999963 334545568999999999644
No 372
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=36.81 E-value=59 Score=28.13 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=39.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..++..|++++|+..++..-...+.. ......+...|..++..|++++|...|.+
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 47 ESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55778999999999997764322111 11234455678888999999999999875
No 373
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=36.53 E-value=65 Score=34.82 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...++..|++++|+..++..-...+........++...|..++..++|++|+.+|.+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356788999999999998764332222233445677788889999999999999876
No 374
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=36.50 E-value=47 Score=28.73 Aligned_cols=54 Identities=13% Similarity=-0.026 Sum_probs=38.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..-+...|++++|+..++..-...+.. .......|..++..++|++|..+|.+.
T Consensus 57 a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 57 AACYTKLLEFQLALKDCEECIQLEPTF----IKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355678899999999987754322111 234556778888999999999999763
No 375
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=36.46 E-value=69 Score=31.32 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhh---HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMA---KEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~---~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
.-+...|++++|+..++..-...+.. ...+..++...|..++..++|++|++.|.+.=.++|.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 44567778888877776653221111 1224456777888889999999999999874233443
No 376
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=36.36 E-value=77 Score=27.02 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=40.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcch---hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGE---MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~---~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+..++..-...+ ........++...|..++..++|++|.+.|.+
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 45 AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3567789999999999877543211 11112245666788889999999999999876
No 377
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.29 E-value=8.2 Score=31.36 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=18.1
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
.+|+.|+++|.... +...|..+|..|+.
T Consensus 6 ~~C~~C~~~I~~~~--v~a~~~~wH~~CF~ 33 (73)
T 1wig_A 6 SGCDSCEKYITGRV--LEAGEKHYHPSCAL 33 (73)
T ss_dssp CSCSSSCCCCSSCC--BCCSSCCBCTTTSC
T ss_pred CCcccCCCEecCee--EEeCCCCCCCCcCE
Confidence 57888888876532 33456677777765
No 378
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=36.21 E-value=61 Score=31.97 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=41.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
....++..|++++|+...+......+.. ..........|..++..++|++|+..|.+
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567899999999999998865322111 11224555678889999999999999876
No 379
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=36.08 E-value=4.4e+02 Score=28.30 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=32.0
Q ss_pred CeEEEEecCCCceEEEEecCCCCCCCceecccccCCCc-EEEEEc--CCeEEEEeecC
Q 043572 323 GKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGK-LLVVAT--PTKVICYQKVP 377 (997)
Q Consensus 323 ~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~-~~~v~s--~~~V~~l~~~~ 377 (997)
+.|.|.+..+++.+.+|++.... ..+.-. .+|+ .+|++. ++.|..+....
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~~p--~~i~~s---~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGHDV--DAISVA---QDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CeEEEEECCCCEEEEEEECCCCc--CeEEEC---CCCCeEEEEEcCCCCeEEEEECCC
Confidence 57999999999999999887631 222211 1345 556654 46677666543
No 380
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=36.01 E-value=68 Score=34.31 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=44.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.-..++..|++++|+..++..-...+........++...|..++..++|++|..+|.+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 72 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4567889999999999998765432222233456677788889999999999999876
No 381
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=35.81 E-value=4.4e+02 Score=28.29 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=43.3
Q ss_pred eEEEEEEC----ceEEEEEEeCC-----eE-EEEEeEecCCc-----ceEEEEeC--CEEEEEECCcE-EEEEecCCcce
Q 043572 195 NVFAVIIG----KRLVLIELVNG-----SF-VILKEIQCMDG-----VKTMVWLN--DSIIVGTVNGY-SLFSCVTGQSG 256 (997)
Q Consensus 195 ~~l~Va~k----kki~i~~~~~~-----~~-~~~kei~~~~~-----~~~l~~~~--~~l~vg~~~~y-~lidl~~g~~~ 256 (997)
..+|.|.| .|+.|.++... .| ++..++.+|.. |.+|.... +.|++-++.+| +++|++||...
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 35677777 58999998532 45 34567666553 47887775 45888899876 67999988543
No 382
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.59 E-value=17 Score=33.09 Aligned_cols=30 Identities=27% Similarity=0.648 Sum_probs=23.9
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
+|+.|+++|.....++-..|..+|..|..=
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C 97 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKC 97 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBC
T ss_pred ChhhcCCccCccceeEeeCCceECccCccc
Confidence 899999999764455566789999999763
No 383
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.37 E-value=19 Score=28.84 Aligned_cols=36 Identities=28% Similarity=0.617 Sum_probs=25.9
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTS 977 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~ 977 (997)
=+|..|+++|....|+. .+|.++...|........|
T Consensus 34 F~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~C 69 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVP-DKGAHYCVPCYENKFASGP 69 (72)
T ss_dssp CBCTTTCCBTTTSCEEE-ETTEEEEHHHHHHHTSCCC
T ss_pred CeECCCCCcCCCCccCC-cCCeEECHHHHHHHccCcC
Confidence 37999999998877654 3788888888766433333
No 384
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=35.13 E-value=65 Score=27.45 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...+...|++++|+..++......+.. ..++...|..++..++|++|..+|.+.
T Consensus 53 a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 53 AAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456778999999999987764322111 234556788888999999999998763
No 385
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=35.03 E-value=68 Score=32.27 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=42.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
....++..|+|++|+..++..-...+.. ......+...|..++..++|++|...|.+
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 77 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYER 77 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4467889999999999998875432211 11234566688889999999999999876
No 386
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=35.03 E-value=99 Score=25.92 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=38.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+.+++......+.. ..+....|..++..++|++|...|.+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~ 68 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQK 68 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456788999999999997764322111 12445567778889999999998876
No 387
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=34.88 E-value=22 Score=34.11 Aligned_cols=30 Identities=13% Similarity=0.442 Sum_probs=21.2
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
.+|..|+++|.....++-..|..+|..|..
T Consensus 66 ~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~ 95 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRAQDFVYHLHCFA 95 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEETTEEEEGGGCB
T ss_pred ccccccccccCCCcEEEEcCCceEeeCCCc
Confidence 478888888876544444567788887765
No 388
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=34.87 E-value=4e+02 Score=27.57 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=49.6
Q ss_pred EEEEEE--CceEEEEEEeCCeEEEEEeEe---cCCcceEEEEeCCEEEEEECC---------cEEEEEecCCcceeeecC
Q 043572 196 VFAVII--GKRLVLIELVNGSFVILKEIQ---CMDGVKTMVWLNDSIIVGTVN---------GYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 196 ~l~Va~--kkki~i~~~~~~~~~~~kei~---~~~~~~~l~~~~~~l~vg~~~---------~y~lidl~~g~~~~l~~~ 261 (997)
.++|+- ..+|.+|....+++.. .+. ....+.++++..+.+++...+ ...++|..+|+....+..
T Consensus 209 ~l~v~d~~~~~I~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 209 QLCVADRENGRIQCFKTDTKEFVR--EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEE--EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred EEEEEECCCCEEEEEECCCCcEEE--EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence 355553 4567777765344432 222 223566777766544444433 456778777776666643
Q ss_pred CC-CCCCCceEEcCCCCeEEEEe--CCeEEEEccCCC
Q 043572 262 PD-VSCPPMLKLLSKEQKVLLLV--DNVGVFVDAHGQ 295 (997)
Q Consensus 262 ~~-~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~G~ 295 (997)
.. ....|.-..+..++.++++. ++....++.+|.
T Consensus 287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 21 12335444455444555542 233444444443
No 389
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=34.77 E-value=78 Score=28.09 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=39.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGE--MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~--~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++....-.. ........++...|..++..++|++|.++|.+
T Consensus 57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 556789999999999877532111 11122345666788889999999999999876
No 390
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=34.73 E-value=3.4e+02 Score=26.69 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=30.7
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC-EEEEEEC--CcEEEEEecC
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMDGVKTMVWLND-SIIVGTV--NGYSLFSCVT 252 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~-~l~vg~~--~~y~lidl~~ 252 (997)
+.|+.. .+|..|........... ..-...|..+++..+ .|+|+.. +....+|..+
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred EEEEECCCCEEEEEecCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 566654 35555554433222211 111145788888754 7888874 5678888754
No 391
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.60 E-value=13 Score=29.58 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=25.8
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTS 977 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~ 977 (997)
=+|..|+++|....|+. .+|.++...|..+.....|
T Consensus 32 F~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTA-RDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp SBCSSSCCBCTTSCCEE-SSSSEECHHHHHHHTCCCC
T ss_pred CccCCCCCcCCcCceEe-eCCeEECHHHHHHHhcccc
Confidence 37999999998776754 4788888777765433333
No 392
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=34.56 E-value=61 Score=29.93 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=39.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..-++..|++++|+..++..-.-.+.. ...+...|..++..++|++|...|.+
T Consensus 52 ~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 52 AAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 356788999999999997754322111 23455678888999999999999976
No 393
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=34.46 E-value=74 Score=30.42 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=40.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhc---ch------hh---HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECE---GE------MA---KEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~---~~------~~---~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..++..|+|++|+...+..-.- .. .. ......++...|..++..++|++|+.+|.+.
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5677899999999998775321 11 00 1112356667888899999999999999763
No 394
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=34.40 E-value=23 Score=39.43 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=29.6
Q ss_pred CCCcCccccCccC-C--ccEEEcCCCeEEEeccccccCcccCC-CCCCCC
Q 043572 939 DESLCDSCHARLG-T--KLFAMYPDDTIVCYKCYRRQGESTSI-TGRDFK 984 (997)
Q Consensus 939 ~~~~C~vC~k~l~-~--~~f~v~p~g~~~H~~C~~~~~~~~~~-t~~~f~ 984 (997)
..+.|.+|++.+. . ..+-.--||.++|..|..... . |+ .+..|.
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~-C~~~~~~~~ 403 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-P-CGRHGQDFA 403 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-C-C--------
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-C-CCCCchhhc
Confidence 5689999999983 2 446667799999999999765 4 76 655444
No 395
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.39 E-value=28 Score=27.54 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCCcCccccCccCC--ccEEE-cCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGT--KLFAM-YPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~--~~f~v-~p~g~~~H~~C~~~~ 972 (997)
++..|.+|++.-.. ..++. --|+..||..|+.-.
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~ 41 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPH 41 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCc
Confidence 56789999986421 23333 458999999998854
No 396
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=34.37 E-value=39 Score=31.26 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=38.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-++..|+|++|+..++..-.-++.. ...+...|..++..|+|++|...|.+.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 45678999999999997754322111 134455778889999999999998763
No 397
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=34.06 E-value=27 Score=26.03 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=25.4
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
+.|..|++.|-.. +.--.|+..+|..|...
T Consensus 15 t~C~~C~k~i~~G-~kC~~Ck~~cH~kC~~~ 44 (49)
T 1kbe_A 15 QVCNVCQKSMIFG-VKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp CCCSSSCCSSCCE-EEETTTTEEESSSCTTT
T ss_pred cCccccCceeECc-CCCCCCCCccchhhcCc
Confidence 8999999999753 66667899999999874
No 398
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=34.04 E-value=3.9e+02 Score=27.17 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=76.8
Q ss_pred EEEEECceEEEEEEeCCeEEEEEeEec--C-CcceEEEEeC-CEEEEEECC-----------cEEEEEec-CCcceeeec
Q 043572 197 FAVIIGKRLVLIELVNGSFVILKEIQC--M-DGVKTMVWLN-DSIIVGTVN-----------GYSLFSCV-TGQSGVIFT 260 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~~~~~~kei~~--~-~~~~~l~~~~-~~l~vg~~~-----------~y~lidl~-~g~~~~l~~ 260 (997)
+.|+..+.|.+|....+.+..+..... + ..+..+.+.. +.+++++.. .-.++.++ +|....+..
T Consensus 67 l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 146 (297)
T 3g4e_A 67 YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD 146 (297)
T ss_dssp EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence 677778888888876666665543211 1 1245676663 458887631 22344333 233333221
Q ss_pred CCCCCCCCceEEcCCCCeEEEEeC---CeEEEE--c-cCCCccccc--ccc---CCCCCeEEEeC-cEEEE--EECCeEE
Q 043572 261 LPDVSCPPMLKLLSKEQKVLLLVD---NVGVFV--D-AHGQPVGGS--LVF---RKSPDAVGELS-MYVVV--LRGGKME 326 (997)
Q Consensus 261 ~~~~~~~p~i~~~~~~~e~Ll~~~---~~g~fv--~-~~G~~~r~~--i~w---~~~P~~i~~~~-PYll~--~~~~~ie 326 (997)
. ...|.-..+..++..|.+.+ +....+ + .+|...... ..+ ...|..++++. -.|.+ ...+.|.
T Consensus 147 ~---~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 147 Q---VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVI 223 (297)
T ss_dssp E---ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred c---cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEE
Confidence 1 11233334433445444322 222233 3 456543221 122 24688888863 23333 3456799
Q ss_pred EEecCCCceEEEEecCC
Q 043572 327 LYHKKSGICVQAVTFGG 343 (997)
Q Consensus 327 I~~~~~~~lvQ~i~~~~ 343 (997)
+++..+++++++|.++.
T Consensus 224 ~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 224 RLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp EECTTTCCEEEEEECSS
T ss_pred EEcCCCceEEEEEECCC
Confidence 99999999999999875
No 399
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=33.87 E-value=9.3 Score=34.69 Aligned_cols=10 Identities=50% Similarity=1.178 Sum_probs=5.1
Q ss_pred cCccccCccC
Q 043572 942 LCDSCHARLG 951 (997)
Q Consensus 942 ~C~vC~k~l~ 951 (997)
+|+.|+++|.
T Consensus 10 ~C~~C~~~I~ 19 (123)
T 2l3k_A 10 LCASCDKRIR 19 (123)
T ss_dssp CCSSSSCCCC
T ss_pred cccCCCCeec
Confidence 4555555554
No 400
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.82 E-value=18 Score=29.99 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=26.3
Q ss_pred CcCccccCccCCccEEEc-CCCeEEEecccccc
Q 043572 941 SLCDSCHARLGTKLFAMY-PDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~-p~g~~~H~~C~~~~ 972 (997)
=+|..|+++|....|..+ .+|.++...|..+.
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 389999999998888776 58899888887654
No 401
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.62 E-value=20 Score=28.70 Aligned_cols=36 Identities=33% Similarity=0.729 Sum_probs=26.5
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTS 977 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~ 977 (997)
=+|..|+++|....|+. .+|.++...|........|
T Consensus 34 F~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~~~C 69 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIP-KDNQNFCVPCYEKQHASGP 69 (72)
T ss_dssp TCCSSSCCCCCSSSEEE-ETTEEEEHHHHHHHTSSCC
T ss_pred CcccccCCccCCCccCc-cCCeEECHHHHhHHhCCCC
Confidence 47999999998876754 4788888888776533333
No 402
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=33.53 E-value=1.2e+02 Score=35.79 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=40.0
Q ss_pred eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec---------CCeEE
Q 043572 43 LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC---------DQCLF 113 (997)
Q Consensus 43 ~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~---------d~~l~ 113 (997)
.++.++.+|.+..+....... ..+..........|..+..-|+.+.++++.. +++|+
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~~--------------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQS--------------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp EEEEECTTSCEEEEESSSCCE--------------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcE--------------EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 555566799998888765331 1111100011124888999999997776333 47999
Q ss_pred EeecCcccc
Q 043572 114 LTDSLLTQP 122 (997)
Q Consensus 114 ~~~l~~l~~ 122 (997)
++++..-++
T Consensus 94 ~~d~~~g~~ 102 (719)
T 1z68_A 94 IYDLSNGEF 102 (719)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCcc
Confidence 999866443
No 403
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.39 E-value=33 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
.+..|.+|++. ...+..--|...||..|+...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~pp 39 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPP 39 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSSSCEECSSSSSSC
T ss_pred CCCCCccCCCC--CeEEEcCCCCcceECccCCCC
Confidence 56789999985 334444567899999999853
No 404
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.36 E-value=56 Score=27.16 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=33.7
Q ss_pred cCCCcCccccCccCC---ccEEEcCCCeEEEeccccccCcccCCCCCCCCCcc
Q 043572 938 NDESLCDSCHARLGT---KLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDV 987 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~---~~f~v~p~g~~~H~~C~~~~~~~~~~t~~~f~~~~ 987 (997)
..-+.|.+|++.|-. ..+-.--|+..+|..|..... ..|+.....++++
T Consensus 26 ~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v~-~~C~~~~~~~~~~ 77 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKII-GRCTGTAANSRDT 77 (83)
T ss_dssp SSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTCC-SCCSSCCCCCSSC
T ss_pred CCCcChhhcChhhccccccccccCCcCCeeChhhhhhCC-CcCCCccccCcCC
Confidence 355899999999842 456666789999999998743 4466333334433
No 405
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.17 E-value=9.8 Score=31.47 Aligned_cols=29 Identities=14% Similarity=0.364 Sum_probs=21.3
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
.+|+.|+++|... ++-..|..+|..|+.=
T Consensus 16 ~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C 44 (81)
T 1x6a_A 16 EFCHGCSLLMTGP--FMVAGEFKYHPECFAC 44 (81)
T ss_dssp CBCTTTCCBCCSC--CBCCTTCCBCTTSCBC
T ss_pred CcCccCCCCcCce--EEEECCceeccccCCc
Confidence 5799999999843 2445678889888763
No 406
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=33.17 E-value=3.9e+02 Score=26.93 Aligned_cols=214 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCeEEEE--------cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCC-------CcceEEEeecccCcEEE
Q 043572 41 QVLIYIG--------TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVAD-------SPVESIFVLDDVGKVLL 105 (997)
Q Consensus 41 ~~~l~iG--------T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~I~qi~vl~~~~~lLv 105 (997)
+.+||++ +.+|.|+.|...... ... +.. ..+..|.+.++.+++.|
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~--------------~~~------~~~~~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGK--------------KTV------ICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCC--------------EEE------EECCEETTEECCEEEEEECSSSSEEEE
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCc--------------EEE------EEecccCCCCCCCceEEEecCCCcEEE
Q ss_pred EecCCeEEEeecCcccccccc-------ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccc
Q 043572 106 LFCDQCLFLTDSLLTQPLKKL-------GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIK 178 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l~~~~~~-------~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 178 (997)
+-.++.|+.|+.. ...... .....+..++.++...
T Consensus 88 ~~~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~------------------------------------ 129 (314)
T 1pjx_A 88 ADMRLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGN------------------------------------ 129 (314)
T ss_dssp EETTTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSC------------------------------------
T ss_pred EECCCCEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCC------------------------------------
Q ss_pred cCCccchhcccccCCceEEEEEECce---------------EEEEEEeCCeEEEEEeEecCCcceEEEEe------CCEE
Q 043572 179 ANGVKVKEEEQHCRGDNVFAVIIGKR---------------LVLIELVNGSFVILKEIQCMDGVKTMVWL------NDSI 237 (997)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~l~Va~kkk---------------i~i~~~~~~~~~~~kei~~~~~~~~l~~~------~~~l 237 (997)
+.|+.... ..+|.+..+ -....-......+..++|. ++.+
T Consensus 130 ------------------l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l 190 (314)
T 1pjx_A 130 ------------------LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQL 190 (314)
T ss_dssp ------------------EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEE
T ss_pred ------------------EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEE
Q ss_pred EEEEC--CcEEEEEec-CCcce---eeecCCCCC-CCCceEEcCCCCeEEEE--eCCeEEEEccC-CCccccccccC-CC
Q 043572 238 IVGTV--NGYSLFSCV-TGQSG---VIFTLPDVS-CPPMLKLLSKEQKVLLL--VDNVGVFVDAH-GQPVGGSLVFR-KS 306 (997)
Q Consensus 238 ~vg~~--~~y~lidl~-~g~~~---~l~~~~~~~-~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~-G~~~r~~i~w~-~~ 306 (997)
+++.. +....+|++ +|... ......... ..|.-..+..++.+.++ .++....++.+ |...+ .+... ..
T Consensus 191 ~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~-~~~~~~~~ 269 (314)
T 1pjx_A 191 IVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM-RIRCPFEK 269 (314)
T ss_dssp EEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE-EEECSSSC
T ss_pred EEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE-EEeCCCCC
Q ss_pred CCeEEE--eCcEEEEEECC--eEEEEecCC
Q 043572 307 PDAVGE--LSMYVVVLRGG--KMELYHKKS 332 (997)
Q Consensus 307 P~~i~~--~~PYll~~~~~--~ieI~~~~~ 332 (997)
|..+++ ..-+|++...+ .|.++++..
T Consensus 270 ~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 270 PSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceeEEECCCCCEEEEEeCCCCeEEEEeCCC
No 407
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.06 E-value=24 Score=31.40 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=22.6
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|... .++.-.|..+|..|+.=
T Consensus 3 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C 33 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR-YFLKAIDQYWHEDCLSC 33 (114)
T ss_dssp CBCBSSSCSCBCSS-EEEECSSSEECTTTCCC
T ss_pred CCCCcCCCCeeCCc-EEEEECchhHHHhcCcc
Confidence 45799999999854 33444678889888763
No 408
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=32.93 E-value=2.4e+02 Score=31.67 Aligned_cols=21 Identities=14% Similarity=0.521 Sum_probs=19.2
Q ss_pred CCeEEEEecCCCceEEEEecC
Q 043572 322 GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 322 ~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
.+.|.|+++.++.++|+|++.
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESC
T ss_pred CCEEEEEECCCCcEeeEEecC
Confidence 478999999999999999986
No 409
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=32.75 E-value=61 Score=28.48 Aligned_cols=53 Identities=11% Similarity=-0.066 Sum_probs=37.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-+...|++++|+..++..-.-++.. ...+...|..+...|+|++|...|.+.
T Consensus 59 ~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 59 LTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667899999999987754322111 124455777888899999999998763
No 410
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=32.64 E-value=60 Score=29.18 Aligned_cols=52 Identities=8% Similarity=-0.187 Sum_probs=38.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.-+...|++++|+..++..-.-++.. ...+...|..++..|+|++|...|.+
T Consensus 60 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 60 ACRQSLGLYEQALQSYSYGALMDINE----PRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45778999999999997754322111 12345578888999999999999876
No 411
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=32.54 E-value=4.2e+02 Score=27.02 Aligned_cols=54 Identities=13% Similarity=-0.020 Sum_probs=40.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
....++..|++++|+..++..-...+.. ...+...|..++..++|++|...|.+
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4567889999999999998764322211 13555677888999999999999876
No 412
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=32.32 E-value=78 Score=26.62 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=38.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+..++......+.. .......|..++..++|++|..+|.+
T Consensus 50 a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 50 GNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456778999999999987754322111 12344567778889999999999876
No 413
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=32.22 E-value=12 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.643 Sum_probs=24.4
Q ss_pred EcCCCcCccccCccCCccEEEcC---CCeEEEecccccc
Q 043572 937 INDESLCDSCHARLGTKLFAMYP---DDTIVCYKCYRRQ 972 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p---~g~~~H~~C~~~~ 972 (997)
|..+..|.||+.-=... .|| |+.+||..|+++.
T Consensus 12 ~~~D~~C~VC~~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccc---eeccccccccccHhhcccc
Confidence 55778999998433322 366 4899999999985
No 414
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.11 E-value=24 Score=31.86 Aligned_cols=31 Identities=13% Similarity=0.405 Sum_probs=23.9
Q ss_pred CcCccccCccCCccEEEcCCCeEEE--eccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVC--YKCYRR 971 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H--~~C~~~ 971 (997)
.+|+.|+++|.....++-..|..+| ..|..=
T Consensus 64 ~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C 96 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLC 96 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBC
T ss_pred ccCcccCCcCCcCceEEECCCCEeeCCCCCcCc
Confidence 5899999999864444556789999 888763
No 415
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=32.09 E-value=71 Score=28.93 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...++..|++++|+..++..-...+.. ..++...|..++..++|++|+..|.+.
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356778999999999997754322111 234556778888899999999998763
No 416
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.01 E-value=17 Score=29.86 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=23.3
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
..+|+.|+++|.... +-..|..+|..|+.=
T Consensus 15 ~~~C~~C~~~I~~~~--v~a~~~~~H~~CF~C 44 (80)
T 1x3h_A 15 SPKCGGCNRPVLENY--LSAMDTVWHPECFVC 44 (80)
T ss_dssp SCBCTTTCCBCCSSC--EEETTEEECTTTCBC
T ss_pred CCccccCCCeeccee--EEECCCeEecCcCCh
Confidence 468999999998643 345678999998774
No 417
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=31.95 E-value=84 Score=32.74 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...++..|++++|+...+......+........++...|..++..++|++|+..|.+.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4558889999999999987653322222333455666788899999999999999763
No 418
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.69 E-value=12 Score=30.35 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=23.8
Q ss_pred CcCccccCccC-CccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLG-TKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~-~~~f~v~p~g~~~H~~C~~~~ 972 (997)
=+|..|+++|. ...| ...+|.+++..|....
T Consensus 32 F~C~~C~~~L~~~~~f-~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEM-YLQGSSIWHPACRQAA 63 (73)
T ss_dssp SCCSSSCCCCCSSCCC-EEETTEEECTTHHHHT
T ss_pred CEeCCCCCCCCCCCee-EeeCCEEEChHHChHh
Confidence 38999999998 4444 3458899999998764
No 419
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=31.67 E-value=45 Score=38.50 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=42.3
Q ss_pred ceeeeeEEeec--CC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE
Q 043572 30 RSLSISPISDC--QV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL 105 (997)
Q Consensus 30 ~~~~I~ci~~~--~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv 105 (997)
....+|.|++. ++ -+||||++|.|+-..+.+..... .......... ...||.. .+....+.|.|
T Consensus 403 ~~~~~T~iav~~~~~~tV~FlGT~~G~l~Kv~~~~~~~~~-------~~~~~~~~~~----~~~pi~~-~l~~~~~~Lyv 470 (527)
T 4fww_A 403 GPVQVTALYVTRLDNVTVAHMGTMDGRILQVELVRSLNYL-------LYVSNFSLGD----SGQPVQR-DVSRLGDHLLF 470 (527)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEETTSEEEEEECSCCSSCC-------CEEEEEEETT----SCCCBCS-CCEEETTEEEE
T ss_pred CceEEEEEEEeccCCEEEEEEECCCCeEEEEEEcCCCCcc-------eEEEEEEecC----CCceeeh-hcccCCCEEEE
Confidence 34566776654 33 39999999999987776543211 0001111111 3457754 34445566777
Q ss_pred EecCCeEEEeec
Q 043572 106 LFCDQCLFLTDS 117 (997)
Q Consensus 106 ~l~d~~l~~~~l 117 (997)
.+++.|.-.++
T Consensus 471 -~s~~~V~~vpv 481 (527)
T 4fww_A 471 -ASGDQVFQVPI 481 (527)
T ss_dssp -EETTEEEEEET
T ss_pred -EECCEEEEEec
Confidence 77777666555
No 420
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.60 E-value=71 Score=28.20 Aligned_cols=53 Identities=13% Similarity=-0.054 Sum_probs=38.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..+...|++++|+..++..-...+.. ...+...|..++..++|++|..+|.+.
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55778999999999987754321111 234456778888999999999998763
No 421
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=31.38 E-value=87 Score=28.71 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=42.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhc--------chhh------HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECE--------GEMA------KEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~--------~~~~------~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
.-..++..|+|++|+...+..-.- .+.. ......++...|..++..++|++|+..+.+.=.+||.
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 346788999999999887664321 0000 1122356667788899999999999998763123444
No 422
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=31.15 E-value=78 Score=26.93 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++......+.. .......|..++..+++++|..+|.+
T Consensus 43 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 43 NAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44556666777766665543211111 11223344555555666666665544
No 423
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=31.06 E-value=61 Score=38.56 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=45.0
Q ss_pred eeeEEeec------CC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc--C
Q 043572 33 SISPISDC------QV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV--G 101 (997)
Q Consensus 33 ~I~ci~~~------~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~--~ 101 (997)
.+|.|++. ++ -+||||++|.|+-....+.... .+....... ...||..|.+.+.. +
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~---------~~ee~~~~~----~~~pI~~l~l~~~~~~~ 464 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVH---------IIEETQLFQ----DFEPVQTLLLSSKKGNR 464 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEE---------EEEEEECCT----TCCCCCEEEECCSSSSC
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCce---------EEEEecccC----CCCcceeeEeccCCCcc
Confidence 46776642 22 4999999999998766543210 111111111 34689888877776 7
Q ss_pred cEEEEecCCeEEEeecCc
Q 043572 102 KVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 102 ~lLv~l~d~~l~~~~l~~ 119 (997)
.|.| .+++.|.-.++..
T Consensus 465 ~Lyv-~s~~~V~~vpl~~ 481 (663)
T 1olz_A 465 FVYA-GSNSGVVQAPLAF 481 (663)
T ss_dssp EEEE-ECSSCEEEEESCC
T ss_pred EEEE-EEcCeEEEEEchh
Confidence 6777 8888777666543
No 424
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=31.05 E-value=33 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
.+..|.+|++. ...+..--|...||..|+...
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~pp 35 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPP 35 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSC
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCC
Confidence 45789999985 334444567899999999853
No 425
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=30.81 E-value=58 Score=30.30 Aligned_cols=52 Identities=17% Similarity=-0.052 Sum_probs=38.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.-+...|+|++|+...+..-.-.+.. -..+...|..++..|+|++|...|.+
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~----~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKND----YTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSC----CHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55778999999999987754221111 12445678889999999999999976
No 426
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=30.59 E-value=73 Score=32.92 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=38.8
Q ss_pred HHHHhcCChHHHHHHHHHHhh---cchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELEC---EGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~---~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-+...|++++|+...+..-. .........-.++...|..++..++|++|+.+|.++
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 345678899999888876531 111111111256667889999999999999999863
No 427
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=30.41 E-value=68 Score=29.35 Aligned_cols=52 Identities=12% Similarity=-0.126 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.-+...|++++|+..++..-.-.+.. -..+...|..++..|+|++|...|.+
T Consensus 63 ~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 63 ACRQAMGQYDLAIHSYSYGAVMDIXE----PRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678999999999997754321111 12344568888999999999999876
No 428
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=30.40 E-value=89 Score=32.31 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=39.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+...++..|++++|+.+.+..-...+.. ...+...|..+...|++++|...|.+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4466788999999999988764322211 134555677888999999999998763
No 429
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.35 E-value=4.6e+02 Score=26.78 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 545 VDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 545 vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
.+..+.++|+..++.+....-++..+ ..... -+..++.+|...+++++|++.+.++..
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~---~~~~~-------a~~~la~~~~~~~~~~~A~~~l~~ll~ 93 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSS---APELQ-------AVRMFAEYLASHSRRDAIVAELDREMS 93 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTS---CHHHH-------HHHHHHHHHHCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccC---ChhHH-------HHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence 35567788888887655554444321 11211 234588899999999999999998764
No 430
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=29.96 E-value=9.5e+02 Score=30.36 Aligned_cols=145 Identities=8% Similarity=-0.066 Sum_probs=80.4
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEe--EecCCcceEEEEe-CCEEEEEECCcEEEEEecCCcc-eeeecCCCCCCCCce
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKE--IQCMDGVKTMVWL-NDSIIVGTVNGYSLFSCVTGQS-GVIFTLPDVSCPPML 270 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~ke--i~~~~~~~~l~~~-~~~l~vg~~~~y~lidl~~g~~-~~l~~~~~~~~~p~i 270 (997)
..+++.....-.++++.++.+..+.. +....+...+.-. ++.++=.+.++..+++...+.. ...-++++ .+++
T Consensus 441 ~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~---~~I~ 517 (1158)
T 3ei3_A 441 DTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQA---KNIS 517 (1158)
T ss_dssp CEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTC---CCCC
T ss_pred CEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCC---CEEE
Confidence 46888888888999997665555532 2222222233333 4567777889999998754322 23322222 2232
Q ss_pred -EEcCCCCeEEEEeCCeEEEEcc-CCCccc-cccccCCCCCeEEEe--------CcEEEEEE--CCeEEEEecCCCceEE
Q 043572 271 -KLLSKEQKVLLLVDNVGVFVDA-HGQPVG-GSLVFRKSPDAVGEL--------SMYVVVLR--GGKMELYHKKSGICVQ 337 (997)
Q Consensus 271 -~~~~~~~e~Ll~~~~~g~fv~~-~G~~~r-~~i~w~~~P~~i~~~--------~PYll~~~--~~~ieI~~~~~~~lvQ 337 (997)
+... +..++++.++..++... +|+... .....+..+..+.+. .+|+++.+ ++.++|+++.+.+.+.
T Consensus 518 ~As~n-~~~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 518 VASCN-SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp EEEEC-SSEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEeC-CCEEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 2333 34677776655444332 343221 123344444444433 35666554 6799999999877665
Q ss_pred EEecCC
Q 043572 338 AVTFGG 343 (997)
Q Consensus 338 ~i~~~~ 343 (997)
..+++.
T Consensus 597 ~~~L~~ 602 (1158)
T 3ei3_A 597 KEMLGG 602 (1158)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555544
No 431
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=29.84 E-value=87 Score=27.34 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=39.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..-+...|++++|+..++..-...+.. ...+...|..++..++|++|...|.+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 50 ALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356778999999999987754322111 23455678888999999999999876
No 432
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=29.73 E-value=37 Score=26.88 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
.+..|.+|++. ...+..--|...||..|+...
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~pp 38 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDGCPRAFHLACLSPP 38 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSSCCCEECTTTSSSC
T ss_pred CCCCCccCCCC--CCEEEcCCCChhhcccccCCC
Confidence 56789999974 334444567889999999843
No 433
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=29.62 E-value=52 Score=32.08 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=38.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++..-...+.. ...+...|..++..|+|++|+..|.+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45778999999999997754322211 13455578889999999999999986
No 434
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=29.29 E-value=55 Score=31.43 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-++..|++++|+..++..-...+.. ...+...|..++..++|++|...|.+.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45678999999999997764322111 234556778889999999999999763
No 435
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=29.25 E-value=6.4 Score=27.88 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=13.2
Q ss_pred CcCccccCccCCccEE
Q 043572 941 SLCDSCHARLGTKLFA 956 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~ 956 (997)
+.|..||||+..++++
T Consensus 18 RvC~~CgkPi~lsAIv 33 (44)
T 2lo3_A 18 RVCEKCGKPLALTAIV 33 (44)
T ss_dssp EECTTTCCEEETTTHH
T ss_pred hhhcccCCcchHHHHH
Confidence 6899999999877653
No 436
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.04 E-value=22 Score=29.27 Aligned_cols=31 Identities=13% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
...+|+.|+++|.... +...|..+|..|+.=
T Consensus 14 ~~~~C~~C~~~I~~~~--v~a~~~~~H~~CF~C 44 (79)
T 2cor_A 14 GKYICQKCHAIIDEQP--LIFKNDPYHPDHFNC 44 (79)
T ss_dssp CCCBCTTTCCBCCSCC--CCCSSSCCCTTTSBC
T ss_pred CCCCCccCCCEecceE--EEECcceeCCCCCEe
Confidence 3468999999998432 344577888888764
No 437
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=28.96 E-value=6.1e+02 Score=29.45 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=36.2
Q ss_pred ceEEEEEEeCCeEEEEEeEec-CCcceEEEEe--CCEEEEEECCcEEEEEecCCcceeeecC
Q 043572 203 KRLVLIELVNGSFVILKEIQC-MDGVKTMVWL--NDSIIVGTVNGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 203 kki~i~~~~~~~~~~~kei~~-~~~~~~l~~~--~~~l~vg~~~~y~lidl~~g~~~~l~~~ 261 (997)
..+.++....+....+....- ...+.+++|. |..|.++......++|+.+|....+...
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC
Confidence 345566665554332221110 1125677777 4568888888999999988877766654
No 438
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=28.80 E-value=60 Score=30.82 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhc----chhhHHHHHHHH----HHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECE----GEMAKEMLSFVH----AQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~----~~~~~~~l~~i~----~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-|...|+|++|+.-++..-.- +++..+. ...+ -..|..+..-++|++|+..|.+.
T Consensus 65 ~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 65 EALAGLRSFDEALHSADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 4577899999999998775322 1111111 1122 34677788889999999999873
No 439
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=28.72 E-value=77 Score=31.05 Aligned_cols=55 Identities=13% Similarity=-0.102 Sum_probs=40.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-..++..|++++|+..++..-..++.. -..+...|..++..|++++|+..|.+.
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a 65 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTL 65 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456889999999999998764322211 134556778889999999999999763
No 440
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=28.54 E-value=1e+02 Score=35.69 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=43.5
Q ss_pred eeeeEEeecC--------CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-c----------CCCcce
Q 043572 32 LSISPISDCQ--------VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-V----------ADSPVE 92 (997)
Q Consensus 32 ~~I~ci~~~~--------~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~I~ 92 (997)
+.+|.|++.. .-+||||++|.|+-..+....+.. .+ ..-++.+++ + ..+||.
T Consensus 403 y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~---~~------~~~~iEEi~vf~~~~~~~~~~~~~pI~ 473 (565)
T 3oky_B 403 YRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGF---LN------GSLFLEEMNVYNPEKCSYDGVEDKRIM 473 (565)
T ss_dssp SCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC--------CC------CCEEEEEEECCCHHHHCBTTBCCCCCC
T ss_pred cceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCcc---cc------ccEEEEEEEEeccccccccccCCCceE
Confidence 3456666542 249999999999977665432100 00 001111111 1 246888
Q ss_pred EEEeecccCcEEEEecCCeEEEeec
Q 043572 93 SIFVLDDVGKVLLLFCDQCLFLTDS 117 (997)
Q Consensus 93 qi~vl~~~~~lLv~l~d~~l~~~~l 117 (997)
.|.+.+..+.|.| .+++.|.=.++
T Consensus 474 ~L~ls~~~~~LYV-~s~~~V~qVPl 497 (565)
T 3oky_B 474 GMQLDRASGSLYV-AFSTCVIKVPL 497 (565)
T ss_dssp EEEEEGGGTEEEE-ECSSCEEEEES
T ss_pred EEEEcCCCCEEEE-EecCeEEEeeh
Confidence 8888888887777 77766655554
No 441
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=28.52 E-value=1.3e+02 Score=25.32 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+.+.+......+.. .......|..++..+++++|..+|.+
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~ 60 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQK 60 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456778899999999997754322111 12344567778888999999999876
No 442
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=28.38 E-value=99 Score=34.52 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcc-----hhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 380 EQIKDLLRKKDFKEAISLAEELECEG-----EMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 380 ~qi~~Ll~~~~~eeAl~L~~~~~~~~-----~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..++.+..+|+|++|+.+++..-... +.... .-......|..+..+|+|++|..++.++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 35678889999999999998764321 11122 3334445667788899999999999873
No 443
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=28.38 E-value=4.9e+02 Score=26.50 Aligned_cols=168 Identities=9% Similarity=0.020 Sum_probs=85.6
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEec---CCcceEEEEeC-CEEEE-----EEC--------------CcEEEEEec
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQC---MDGVKTMVWLN-DSIIV-----GTV--------------NGYSLFSCV 251 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~---~~~~~~l~~~~-~~l~v-----g~~--------------~~y~lidl~ 251 (997)
+.|+.. +.|..|... +.+..+....- ...|..+.+.. +.+++ |+. ...+.+|..
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 445543 466666654 44444322111 12345677774 45777 331 345667766
Q ss_pred CCcceeeecCCCCCCCCceEEcCCCCeEEEEe--C------CeEEEEccCCC-cccc-cc-c-cCCCCCeEEEeCc-EEE
Q 043572 252 TGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--D------NVGVFVDAHGQ-PVGG-SL-V-FRKSPDAVGELSM-YVV 318 (997)
Q Consensus 252 ~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~------~~g~fv~~~G~-~~r~-~i-~-w~~~P~~i~~~~P-Yll 318 (997)
+|+...+. . ...|.-..+..++..|.+. . +....++.++. .... .+ . -...|..++++.- .|.
T Consensus 178 ~g~~~~~~--~--~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--D--LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--E--ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--c--CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 67665543 1 1234333444344444332 2 22223343322 1111 11 1 1345778877632 344
Q ss_pred EEECCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEEee
Q 043572 319 VLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 319 ~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
+-..+.|.+++. ++..++.+..+.. +....+. + +++.+++++.+.++++..
T Consensus 254 v~~~~gv~~~~~-~g~~~~~~~~~~~-~~~~~f~--~--d~~~L~it~~~~l~~~~~ 304 (305)
T 3dr2_A 254 SSSGTGVCVFDS-DGQLLGHIPTPGT-ASNCTFD--Q--AQQRLFITGGPCLWMLPL 304 (305)
T ss_dssp ECCSSEEEEECT-TSCEEEEEECSSC-CCEEEEC--T--TSCEEEEEETTEEEEEEC
T ss_pred EecCCcEEEECC-CCCEEEEEECCCc-eeEEEEe--C--CCCEEEEEcCCeEEEEEC
Confidence 444678888887 6888899988763 1122222 1 345678888899998853
No 444
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.38 E-value=21 Score=30.13 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.0
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG 973 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~ 973 (997)
-+|..|+++|....|+ ..+|.++...|..+..
T Consensus 52 F~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFV-EEKGALYCELCYEKFF 83 (90)
T ss_dssp CBCSSSCCBCSSSCBE-ESSSCEECHHHHHHHT
T ss_pred CccCCCCCCCCCCEeE-eECCEEECHHHHHHHc
Confidence 4899999999876664 3678888888877643
No 445
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=28.33 E-value=5.2e+02 Score=26.77 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=22.9
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
+..++.+|...|++++|++.+.+....
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 567888999999999999999887653
No 446
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=28.27 E-value=91 Score=28.14 Aligned_cols=54 Identities=11% Similarity=-0.114 Sum_probs=39.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
...+...|++++|+..++..-...+.. ...+...|..++..++|++|..+|.+.
T Consensus 54 a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 54 SLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 355778999999999987754322111 234556788889999999999999763
No 447
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=28.14 E-value=63 Score=37.35 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=45.1
Q ss_pred eeeEEeec--CC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-c-CCCcce-EEEeecccCcEEE
Q 043572 33 SISPISDC--QV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-V-ADSPVE-SIFVLDDVGKVLL 105 (997)
Q Consensus 33 ~I~ci~~~--~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~I~-qi~vl~~~~~lLv 105 (997)
.+++|++. ++ -+||||++|.|+-..+...... .....+++ + ...||. .|.+.++.+.|.|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~-------------~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv 467 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHG-------------GVQYEMVSVFKDGSPILRDMAFSINQLYLYV 467 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTE-------------EEEEEEEECCTTCCCCCSCCEECTTSSEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCcc-------------ceeEEEEEeecCCCccccceEEccCCCeEEE
Confidence 46666543 33 4999999999998776533210 00111111 1 246886 7877788887777
Q ss_pred EecCCeEEEeecC
Q 043572 106 LFCDQCLFLTDSL 118 (997)
Q Consensus 106 ~l~d~~l~~~~l~ 118 (997)
.+++.|.-.++.
T Consensus 468 -~s~~~V~kvpl~ 479 (539)
T 3al9_A 468 -MSERQVTRVPVE 479 (539)
T ss_dssp -ECSSEEEEEESC
T ss_pred -Eeccccceeehh
Confidence 888877776654
No 448
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=27.59 E-value=1.2e+02 Score=31.20 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=42.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
....++..|+|++|+...+..-...+.. ..++...|..++..++|++|...|.+.-.++|.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4567889999999999997754322111 134456778888999999999999874334443
No 449
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=27.49 E-value=26 Score=27.82 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=24.8
Q ss_pred CCCcCccccCccCCccEEE--c-CCCeEEEeccccc
Q 043572 939 DESLCDSCHARLGTKLFAM--Y-PDDTIVCYKCYRR 971 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v--~-p~g~~~H~~C~~~ 971 (997)
+...|.+|+++.....+.| - -|..-||..|..-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 5678999999998765555 3 5688899999764
No 450
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=27.36 E-value=3.4e+02 Score=24.33 Aligned_cols=28 Identities=14% Similarity=-0.146 Sum_probs=24.3
Q ss_pred ChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 586 HLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 586 ~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
.+..|+.+|...|+|++|++.+.+....
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~ 60 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINV 60 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999987754
No 451
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=27.36 E-value=1.9e+02 Score=34.20 Aligned_cols=159 Identities=9% Similarity=-0.074 Sum_probs=0.0
Q ss_pred EeecCHHHHHHHHHhcCChHHHHHHHHHHh--------hcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCc
Q 043572 373 YQKVPSEEQIKDLLRKKDFKEAISLAEELE--------CEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQP 444 (997)
Q Consensus 373 l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~--------~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp 444 (997)
+.|.+........+..+++++|+..++... ...+...+ .+...|..++..++|++|+..|.+.-..+|
T Consensus 389 ~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 389 VDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVE----LPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchh----HHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Q ss_pred ccccccccCCCCcccccccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHH
Q 043572 445 SEVFPFIMRDPNRWSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRN 524 (997)
Q Consensus 445 ~~l~p~f~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 524 (997)
...-..+. ....++...+ ..+|...
T Consensus 465 ~~~~a~~~------------------------------------lg~~~~~~g~-------------------~~~A~~~ 489 (681)
T 2pzi_A 465 WRWRLVWY------------------------------------RAVAELLTGD-------------------YDSATKH 489 (681)
T ss_dssp CCHHHHHH------------------------------------HHHHHHHHTC-------------------HHHHHHH
T ss_pred chHHHHHH------------------------------------HHHHHHHcCC-------------------HHHHHHH
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCC----hhHHHHHHhhcCCh
Q 043572 525 ITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGH----LRTLAFLYASKGMS 600 (997)
Q Consensus 525 L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~----~~~L~~ly~~~~~~ 600 (997)
+.+-+...-.. ...-..|-.+|.+.++.++ ....+ +.+..... +..|+..|...|++
T Consensus 490 ~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~-----------~al~~~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 490 FTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQ-----------TVWSTNDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHH-----------HHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHH-----------HHHHhCCchHHHHHHHHHHHHHcCCH
Q ss_pred HHHHHHHHH
Q 043572 601 SKALAIWRV 609 (997)
Q Consensus 601 ~~AL~il~~ 609 (997)
++|++.+.+
T Consensus 551 ~~A~~~~~~ 559 (681)
T 2pzi_A 551 VGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
No 452
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.26 E-value=24 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.545 Sum_probs=18.4
Q ss_pred cCccccCccCCccEEEcCCCeEEEecccc
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
+|+.|+++|.....++-..|..+|..|+.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~ 99 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFT 99 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCB
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCe
Confidence 57777777765444444456777776654
No 453
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=27.08 E-value=34 Score=26.70 Aligned_cols=33 Identities=9% Similarity=0.311 Sum_probs=23.9
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
+.+..|.+|++. ...+.---|...||..|+.-.
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~ 41 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPD 41 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTT
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCC
Confidence 456899999984 333434457889999999864
No 454
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.98 E-value=13 Score=30.57 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=24.0
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG 973 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~ 973 (997)
=+|..|+++|....| -.+|.++...|..+..
T Consensus 42 F~C~~C~~~L~~~~f--~~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 42 FNCANCGKELTADAR--ELKGELYCLPCHDKMG 72 (79)
T ss_dssp SBCSSSCCBCCTTCE--EETTEEECHHHHHTTS
T ss_pred CEeCCCCCccCCCCE--eECCEEeCHHHHHHhC
Confidence 389999999987655 3489998888877643
No 455
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.59 E-value=2.1e+02 Score=26.77 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=21.0
Q ss_pred CCCcCccccCccCC---ccEEEcCCCeEEEeccc
Q 043572 939 DESLCDSCHARLGT---KLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 939 ~~~~C~vC~k~l~~---~~f~v~p~g~~~H~~C~ 969 (997)
.++.|+.|+++++. +.....-|++-|...|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 57999999999863 33434445666666665
No 456
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=26.40 E-value=31 Score=30.01 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=32.6
Q ss_pred cCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 388 KKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 388 ~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.|++++|+...+..-..+..... -..++...|..++..++|++|+.+|.+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~a 53 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANG 53 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57888898888775432100111 2345667888899999999999999873
No 457
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.97 E-value=33 Score=30.92 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=18.4
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccccCcccCC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSI 978 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~ 978 (997)
+|..|+++|....|+. .+|..+...|..+.....|.
T Consensus 32 ~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~~~C~ 67 (126)
T 2xqn_T 32 CCFDCDSILAGEIYVM-VNDKPVCKPCYVKNHAVVCQ 67 (126)
T ss_dssp BCTTTCCBCTTSEEEE-ETTEEEEHHHHHHHSCCBCT
T ss_pred CcCCCCCCCCcCEEEe-ECCEEechHHhCcCcCccCc
Confidence 5666666665444432 35556665555543333344
No 458
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.69 E-value=43 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.492 Sum_probs=15.8
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
.+|+.|+++|... .++.-.|..+|..|+.
T Consensus 3 ~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~ 31 (131)
T 2xjy_A 3 LTCGGCQQNIGDR-YFLKAIDQYWHEDCLS 31 (131)
T ss_dssp CBBTTTCCBCCSS-EEEEETTEEEETTTCB
T ss_pred ccCcCCCCEeCCc-EEEEECCCcccHHHcc
Confidence 4566666666543 2233355666666554
No 459
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.58 E-value=25 Score=28.07 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=24.6
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG 973 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~ 973 (997)
=+|..|+++|....|+ ..+|.++...|..+.-
T Consensus 34 F~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFY-AVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEE-ESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCE-eeCCeEECHHHHHHHH
Confidence 4799999999766674 3478899888887653
No 460
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=25.42 E-value=1.1e+02 Score=33.12 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=51.0
Q ss_pred eeeeeEEeec----------CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc
Q 043572 31 SLSISPISDC----------QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV 100 (997)
Q Consensus 31 ~~~I~ci~~~----------~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~ 100 (997)
...|++++.. ++.|.-|+.||.+..+.+..... ...+.. ...+|..+..-|..
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-------------~~~~~~----~~~~v~~v~~~p~~ 198 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-------------ILAGYP----LSSPGISVQFRPSN 198 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-------------EEEEEE----CSSCEEEEEEETTE
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-------------eeeecC----CCCCcEEEEECCCC
Confidence 3568888863 56788899999999999865331 111111 45689999988877
Q ss_pred C-cEEEEecCCeEEEeecCc
Q 043572 101 G-KVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 101 ~-~lLv~l~d~~l~~~~l~~ 119 (997)
. +++.+-.|+++++|++..
T Consensus 199 ~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 199 PNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEEEEEEETTSEEEEEETTC
T ss_pred CceEEecCCCCEEEEEECCC
Confidence 5 455555688999999865
No 461
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=25.30 E-value=1.1e+02 Score=34.76 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=38.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcc-----hhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEG-----EMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~-----~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+.+-.+|+|++|+.+.+..-... +.... .-......|..+..+|+|++|..++.++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLY-VLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34557999999999997754211 11122 2334445667788899999999999873
No 462
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=25.22 E-value=44 Score=33.62 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=12.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHH
Q 043572 589 TLAFLYASKGMSSKALAIWRVLA 611 (997)
Q Consensus 589 ~L~~ly~~~~~~~~AL~il~~l~ 611 (997)
.|+.+|...|++++|++.+.+..
T Consensus 226 ~l~~~~~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 226 YIAYYYTINRDKVKADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555555555555555555444
No 463
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.09 E-value=42 Score=28.36 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=24.4
Q ss_pred CCCcCccccCccC---CccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLG---TKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~---~~~f~v~p~g~~~H~~C~~~~ 972 (997)
....|.+|++.=. +..+..--|...||..|+.-.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Pp 51 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQ 51 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCc
Confidence 4678999998743 223334468999999998754
No 464
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=25.04 E-value=1.1e+02 Score=29.72 Aligned_cols=55 Identities=18% Similarity=0.075 Sum_probs=40.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGE-MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~-~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-..++..|+|++|+...+..-...+ ... .++...|..++..++|++|+.+|.+.
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 34668899999999999987643221 111 23334788899999999999999874
No 465
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=24.89 E-value=1.5e+02 Score=32.06 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcch-----------h-hHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGE-----------M-AKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~-----------~-~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
-..++..|+|++|+...+..-.-.. . .......++...|..++..++|++|++++.+.
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3567889999999988866432000 0 11123356667888899999999999999874
No 466
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=24.82 E-value=85 Score=31.35 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+......++..|++++|+..++..-...+... .+....|..++..++|++|++.|.+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556788999999999999988643222111 13344666788899999999998763
No 467
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.78 E-value=1.1e+02 Score=35.56 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=41.1
Q ss_pred eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-c-CCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 43 LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-V-ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 43 ~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
-+||||++|.|+-..+.+.... +.. . .+.+++ + ...||..|.+.++.+.|.| .+++.|.=.++..
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~-~~~---------~-~ieei~~~~~~~pi~~L~ls~~~~~LyV-~s~~~V~qVPl~~ 448 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEH-SFA---------F-NIMEIQPFRRAAAIQTMSLDAERRKLYV-SSQWEVSQVPLDL 448 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTT-CCC---------E-EEEEECCCSSCCCCCEEEEETTTTEEEE-ECSSEEEEEETTC
T ss_pred EEEEEcCCcEEEEEEecCCCCc-cee---------E-EEEEeeccCCCCceeeEEEcCCCCEEEE-EecceEEEcchhh
Confidence 4999999999997766543311 000 0 011111 1 3568988888888887888 8888776666543
No 468
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=24.48 E-value=8.7e+02 Score=28.09 Aligned_cols=71 Identities=6% Similarity=0.015 Sum_probs=43.2
Q ss_pred eeEEee--cCCeEEEEcCC---------ceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCc
Q 043572 34 ISPISD--CQVLIYIGTQS---------GSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGK 102 (997)
Q Consensus 34 I~ci~~--~~~~l~iGT~~---------G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~ 102 (997)
|.+++. .|+.|+.++.+ |.++.+.+..... ..+....-....|..+..-|+.++
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------~~l~~~~~~~~~~~~~~~SPdG~~ 127 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP---------------QSLDPPEVSNAKLQYAGWGPKGQQ 127 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC---------------EECCCTTCCSCCCSBCCBCSSTTC
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce---------------EeccCCccccccccccEECCCCCE
Confidence 555553 35677777654 6777777654321 000000012224777888898887
Q ss_pred EEEEecCCeEEEeecCcc
Q 043572 103 VLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 103 lLv~l~d~~l~~~~l~~l 120 (997)
+.. .+++.|+++++..-
T Consensus 128 la~-~~~~~i~~~~~~~g 144 (723)
T 1xfd_A 128 LIF-IFENNIYYCAHVGK 144 (723)
T ss_dssp EEE-EETTEEEEESSSSS
T ss_pred EEE-EECCeEEEEECCCC
Confidence 777 88899999998763
No 469
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=24.12 E-value=3.5e+02 Score=32.13 Aligned_cols=115 Identities=10% Similarity=-0.113 Sum_probs=64.9
Q ss_pred cceEEEEe--CCEEEEEEC---CcEEEEEecCCcceeeecCCCCCCCCceEEcC-CCCeEEEEe--CCeEEEEccCCCcc
Q 043572 226 GVKTMVWL--NDSIIVGTV---NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLS-KEQKVLLLV--DNVGVFVDAHGQPV 297 (997)
Q Consensus 226 ~~~~l~~~--~~~l~vg~~---~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~ 297 (997)
.|..+++. ++.|+|+.. .....++++......++.. . -..|.-..+. .++.+.++- .+....++.+|...
T Consensus 497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~-~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~ 574 (699)
T 1n7d_A 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 574 (699)
T ss_dssp CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS-S-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC
T ss_pred CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC-C-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce
Confidence 45566654 566887753 3456666642222233221 1 1235444454 233344442 24566678877533
Q ss_pred cccccc---CCCCCeEEEeCcEEEEEE--CCeEEEEecCCCceEEEEecC
Q 043572 298 GGSLVF---RKSPDAVGELSMYVVVLR--GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 298 r~~i~w---~~~P~~i~~~~PYll~~~--~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
+.-+.. -..|..+++..-+|++.. .+.|.+++..+|..+++|..+
T Consensus 575 ~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~ 624 (699)
T 1n7d_A 575 KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 624 (699)
T ss_dssp EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTT
T ss_pred EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecC
Confidence 211111 246899999888887664 467888888888888887543
No 470
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=24.06 E-value=1.1e+02 Score=29.23 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=14.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHHH
Q 043572 589 TLAFLYASKGMSSKALAIWRVLA 611 (997)
Q Consensus 589 ~L~~ly~~~~~~~~AL~il~~l~ 611 (997)
.++..|...|++++|++.+.+..
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 45555666666666666666654
No 471
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.98 E-value=28 Score=27.80 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=24.1
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
=+|..|+++|....|+. .+|.++...|..+.
T Consensus 36 F~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLT-ERDDILCPDCGKDI 66 (72)
T ss_dssp CBCSSSCCBCTTSCCEE-CSSSEECHHHHHTC
T ss_pred CEeccCCCcCCCCccEe-ECCEEEChhHcCcc
Confidence 48999999998777754 57888888887653
No 472
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=23.69 E-value=6.6e+02 Score=27.70 Aligned_cols=153 Identities=10% Similarity=-0.048 Sum_probs=0.0
Q ss_pred hhHHHHHHhhcCCh-HHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhh
Q 043572 587 LRTLAFLYASKGMS-SKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGW 665 (997)
Q Consensus 587 ~~~L~~ly~~~~~~-~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~w 665 (997)
+..++..|...|++ ++|++.+.+....+.. ...........+....+.+--.++..-
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~----------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPE----------------------LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q ss_pred hhccCchhhhhhcccccccCCCChhHHHHHh---------hccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---
Q 043572 666 IADINAVLAVKVLTSEKRINQLSPDKVIAAI---------DSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKS--- 733 (997)
Q Consensus 666 ll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L---------~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~--- 733 (997)
.++.+|+ + ..+.. ...++..+ ... +.++.+++..+. ....+...+..|+..|...
T Consensus 163 al~~~p~-~-~~~~~--------lg~~~~~~~~~~~~~~~g~~--~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 163 ALTHCKN-K-VSLQN--------LSMVLRQLQTDSGDEHSRHV--MDSVRQAKLAVQ-MDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHTTCCC-H-HHHHH--------HHHHHTTCCCSCHHHHHHHH--HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCC-H-HHHHH--------HHHHHHHhccCChhhhhhhH--HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHh
Q ss_pred -------HHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCCCCChHHHHhhcc----CCCchHHHH
Q 043572 734 -------AIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIE----GSELWLEKA 802 (997)
Q Consensus 734 -------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~yd~~~~L~~~~----~~~l~~e~~ 802 (997)
+-+.+.. .++++++-+ ....+..++
T Consensus 230 ~~~~~g~~~~A~~~--------------------------------------------~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 230 TGQNPKISQQALSA--------------------------------------------YAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp TTCCHHHHHHHHHH--------------------------------------------HHHHHHHCGGGGGCHHHHHHHH
T ss_pred hccccchHHHHHHH--------------------------------------------HHHHHHhCCCcccCHHHHHHHH
Q ss_pred HHHHhhcchHHHHHHH
Q 043572 803 ILYRKLGQETLVLQIL 818 (997)
Q Consensus 803 ~Ll~klg~h~eAL~il 818 (997)
.+|.++|++++|+..+
T Consensus 266 ~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 266 TLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
No 473
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=23.68 E-value=1.1e+02 Score=36.34 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=43.1
Q ss_pred eeeEEeec--CC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-c-CCCcc-eEEEeecccCcEEE
Q 043572 33 SISPISDC--QV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-V-ADSPV-ESIFVLDDVGKVLL 105 (997)
Q Consensus 33 ~I~ci~~~--~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~I-~qi~vl~~~~~lLv 105 (997)
..|+|++. ++ -+||||++|.|+-..+.+.... . ..+.+.+ + ...|| ..|.+.++.+.|.|
T Consensus 400 ~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~-~------------~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv 466 (681)
T 3oky_A 400 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHG-G------------VQYEMVSVFKDGSPILRDMAFSINQLYLYV 466 (681)
T ss_dssp CBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTC-C------------EEEEEEECCTTCCCCCSCCEECTTSSEEEE
T ss_pred ceEEEEEEecCceEEEEEECCCceEEEEEECCCCCc-e------------EEEEEeeeccCCCceeeeeEEcCCCCEEEE
Confidence 45665543 33 4999999999998766543210 0 0111111 2 34577 56777777776777
Q ss_pred EecCCeEEEeecC
Q 043572 106 LFCDQCLFLTDSL 118 (997)
Q Consensus 106 ~l~d~~l~~~~l~ 118 (997)
.+++.|.=.++.
T Consensus 467 -~s~~~V~qvPl~ 478 (681)
T 3oky_A 467 -MSERQVTRVPVE 478 (681)
T ss_dssp -ECSSEEEEEESC
T ss_pred -EecCEEEEEEhh
Confidence 777777666554
No 474
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=23.35 E-value=36 Score=27.49 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=25.3
Q ss_pred EcCCCcCccccCcc---CCccEEEcCCCeEEEecccccc
Q 043572 937 INDESLCDSCHARL---GTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 937 I~~~~~C~vC~k~l---~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
......|.+|++.= .+..+..--|...||..|+.-.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP 51 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC
Confidence 34678999999863 2233444468899999998753
No 475
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.08 E-value=39 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.653 Sum_probs=24.0
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
-+|..|+++|....|+. .+|.++...|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTS-RDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTTCCEEE-CSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCCCeeEe-ECCEEECHHHHHHH
Confidence 47999999998766644 57888888887654
No 476
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=23.04 E-value=27 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
.-+.|.+|++.|- ..+-.--|+..+|..|....
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred CCcCCCCcccccc-cCCEeCCCCCeEChhHHhhC
Confidence 4589999999987 44545568999999998864
No 477
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=22.88 E-value=6.8e+02 Score=26.32 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=37.5
Q ss_pred eEEEEccC-CCccccccccCCCCCeEEEeC--cEEEEEECCeEEEEecCCC--ceEEEE
Q 043572 286 VGVFVDAH-GQPVGGSLVFRKSPDAVGELS--MYVVVLRGGKMELYHKKSG--ICVQAV 339 (997)
Q Consensus 286 ~g~fv~~~-G~~~r~~i~w~~~P~~i~~~~--PYll~~~~~~ieI~~~~~~--~lvQ~i 339 (997)
....+|.. |+.. .++.-.. |..+++.. -++++...+.|.|++..++ +.+++|
T Consensus 287 ~v~viD~~t~~~v-~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 287 EIWVMDTKTKQRV-ARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEEEETTTTEEE-EEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEE
T ss_pred eEEEEECCCCcEE-EEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEe
Confidence 45556754 3332 3455556 99999863 4888776789999999999 889997
No 478
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.63 E-value=25 Score=27.89 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.2
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
-+|..|+++|....|+. .+|.++...|..+.
T Consensus 32 F~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVK-NAGRHLCRPCHNRE 62 (70)
T ss_dssp SBCSSSCCBCSSSCCEE-ETTEEECHHHHHHH
T ss_pred CEeCCCCCcCCCCccEe-ECCeEECHHHhhhh
Confidence 48999999999876643 68888888887654
No 479
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.62 E-value=25 Score=28.76 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=25.4
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccCC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSI 978 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~ 978 (997)
=+|..|+++|....|+. .+|.++...|..+.-...|.
T Consensus 42 F~C~~C~~~L~~~~~~~-~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFE-LDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp CBCSSSCCBSCSSCCEE-SSSCEECHHHHHHHHSSSCC
T ss_pred CChhhCCCCCCCCcEEe-ECCEEECHHHHHHHcCCCCC
Confidence 47999999998766654 47788877776554333343
No 480
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=22.48 E-value=1.9e+02 Score=26.17 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+..++......+.. ..+....|..++..++|++|.++|.+
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 345666777777777776543211111 12333445555666666666666654
No 481
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=22.43 E-value=9.4e+02 Score=27.78 Aligned_cols=97 Identities=8% Similarity=0.040 Sum_probs=58.8
Q ss_pred CcEEEEEecC--Ccc-eeeecCCCCCCCCceEEcCCCCeEEEEeC---CeEEEEccC-------CCccc-----cccccC
Q 043572 243 NGYSLFSCVT--GQS-GVIFTLPDVSCPPMLKLLSKEQKVLLLVD---NVGVFVDAH-------GQPVG-----GSLVFR 304 (997)
Q Consensus 243 ~~y~lidl~~--g~~-~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~---~~g~fv~~~-------G~~~r-----~~i~w~ 304 (997)
++..+||..+ +.. ...+|.+ ..|..+.++.++.++++.+ +...++|.. |.... .++.--
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred CcEEEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 3577788776 433 3345543 2466666655667777754 455666654 21111 133333
Q ss_pred CCCCeEEEeC---cEEEEEECCeEEEEecCC----------CceEEEEecC
Q 043572 305 KSPDAVGELS---MYVVVLRGGKMELYHKKS----------GICVQAVTFG 342 (997)
Q Consensus 305 ~~P~~i~~~~---PYll~~~~~~ieI~~~~~----------~~lvQ~i~~~ 342 (997)
.-|..++++. -|+..+.++.|.+.++.+ ...+++++..
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 5688888763 255555689999999876 5678898874
No 482
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=22.33 E-value=51 Score=26.65 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=28.0
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
..-+.|..|++.|....+-.--||..+|..|....
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCEECTGGGGGC
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCeechhhhccC
Confidence 35689999999995555666678999999998764
No 483
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.27 E-value=59 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=25.0
Q ss_pred CCCcCccccCccCCccEE--EcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFA--MYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~--v~p~g~~~H~~C~~~~ 972 (997)
+...|++|+++-....+. .--|..=||..|..-.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcC
Confidence 567899999997543333 3467889999998753
No 484
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.19 E-value=1.3e+02 Score=31.12 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=38.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhh---HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMA---KEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~---~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.-++..|++++|+...+..-...+.. .-.....+...|..++..|++++|..+|.+.
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999887754221100 0012335566788888889999999998874
No 485
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=22.14 E-value=1.7e+02 Score=29.83 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 377 PSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 377 ~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.+-.+...++..|++++|+.+++......+.. .......|..++..++|++|...|.+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566788999999999999998764322211 123445677888899999999998763
No 486
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.82 E-value=33 Score=27.10 Aligned_cols=31 Identities=26% Similarity=0.717 Sum_probs=23.7
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
=+|..|+++|....|+. .+|.++...|..+.
T Consensus 32 F~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTA-VEDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTTSCEEE-CSSCEEEHHHHHHH
T ss_pred CEECCCCCCCCCCccEe-ECCEEECHHHhHHH
Confidence 47999999998766644 57888888887654
No 487
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=21.56 E-value=45 Score=30.89 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 043572 378 SEEQIKDLLRKKDFKEAISLA 398 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~ 398 (997)
+..+|.+|+.+|+||+|+..+
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~a 23 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQA 23 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 345667777777777776665
No 488
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=21.35 E-value=1.2e+02 Score=32.13 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
+-.....++..|++++|+.+++..-...+.. ...+...|..++..|+|++|...|.+.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5566788999999999999998865322211 234566788889999999999999863
No 489
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.27 E-value=2.5e+02 Score=23.41 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 391 FKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 391 ~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
.++|..++++.-..++.. . ......|..+|.+|+|++|+.+|.+
T Consensus 25 ~~~A~~~l~~AL~~dp~~---~-rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYN---E-AALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CHHHHHHHHHHHHHCTTC---H-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCC---H-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 688888887654322211 1 1233468889999999999999987
No 490
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=21.16 E-value=1.1e+02 Score=32.49 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc
Q 043572 383 KDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS 445 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~ 445 (997)
.-++..|+|++|+..++..-...+.. ...+...|..++..++|++|...|.+.-.++|.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45678899999999987754322111 134455778889999999999999874334443
No 491
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=21.12 E-value=8.1e+02 Score=26.49 Aligned_cols=326 Identities=8% Similarity=-0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcccccccccCCCCc
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNR 457 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~~l~p~f~~~~~~ 457 (997)
+......++..|++++|+..++..-...+.... .+...|..++..|+|++|...|.+.-..+|......
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------- 110 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELKPDYSK----VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI------- 110 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGT-------
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchH-------
Q ss_pred ccccccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 043572 458 WSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKEL 537 (997)
Q Consensus 458 ~~~~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~ 537 (997)
..+...+........
T Consensus 111 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 111 -----------------------------------------------------------------EPMLERNLNKQAMSK 125 (514)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Q ss_pred hhHHH-------------------------------------------------------HHHHHHHHHHHHh---ccCc
Q 043572 538 TILVK-------------------------------------------------------EGVDTLLMYLYRA---LNRV 559 (997)
Q Consensus 538 ~~~~~-------------------------------------------------------~~vDT~Ll~~y~~---~~~~ 559 (997)
..... ..+...+..++.. .++.
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Q ss_pred hhhhcccCCCCcccHHHHHH-----H----------HHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcc
Q 043572 560 HDMENLAPSENSCIVEELET-----L----------LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAV 624 (997)
Q Consensus 560 ~~l~~ll~~~n~c~~e~~~~-----~----------L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~ 624 (997)
+.-..++ +.+.+ . -....-+..++..|...|++++|++++.+......
T Consensus 206 ~~A~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------- 268 (514)
T 2gw1_A 206 DKADESF--------TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--------- 268 (514)
T ss_dssp HHHHHHH--------HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHH--------HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc---------
Q ss_pred cccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhccChHHH
Q 043572 625 ENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEIL 704 (997)
Q Consensus 625 ~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~~~~~ 704 (997)
. ..........+....+.+--.++..-.++.+|....-.+. ...-+......+.+
T Consensus 269 -------------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 269 -------------R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH-----------RGQMNFILQNYDQA 323 (514)
T ss_dssp -------------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHH-----------HHHHHHHTTCTTHH
T ss_pred -------------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHH-----------HHHHHHHhCCHHHH
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCCCCC
Q 043572 705 QRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYD 784 (997)
Q Consensus 705 ~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~yd 784 (997)
..+++..+. ....+...+..++..| ...+.......-+...++......
T Consensus 324 ~~~~~~~~~-~~~~~~~~~~~l~~~~------------------------------~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 324 GKDFDKAKE-LDPENIFPYIQLACLA------------------------------YRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HHHHHHHHH-TCSSCSHHHHHHHHHT------------------------------TTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHH-hChhhHHHHHHHHHHH------------------------------HHcCCHHHHHHHHHHHHHHcccCH
Q ss_pred hHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHh-----------------------------cCCHHHHHHHHhh-
Q 043572 785 PEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALK-----------------------------LEDSEAAEQYCAE- 834 (997)
Q Consensus 785 ~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~-----------------------------l~D~~~Ae~yC~~- 834 (997)
..+...+.+|.++|++++|+..+-.- .++++.|..++.+
T Consensus 373 -----------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 373 -----------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp -----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q ss_pred ----cCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q 043572 835 ----IGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHN 868 (997)
Q Consensus 835 ----~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~ 868 (997)
..+...|..+...|... ...+.+...+.+
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~ 474 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQ-----EDIDEAITLFEE 474 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHh-----cCHHHHHHHHHH
No 492
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=20.93 E-value=1.7e+02 Score=27.39 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=37.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGE--MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~--~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++..-.-.. .........+...|..++..|++++|..+|.+
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 456678999999888866532110 11122334556678888889999999988876
No 493
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.92 E-value=35 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
.+..|.+|++. ...+.---|...||..|+...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~pp 39 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPP 39 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSC
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCC
Confidence 35689999963 233333457788999999853
No 494
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.89 E-value=77 Score=25.19 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCcCccccCccCC--ccEEEcCCCeEEEe
Q 043572 940 ESLCDSCHARLGT--KLFAMYPDDTIVCY 966 (997)
Q Consensus 940 ~~~C~vC~k~l~~--~~f~v~p~g~~~H~ 966 (997)
...|+.|+.+|-+ ...+|--||.++++
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~F 32 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLFF 32 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEEE
Confidence 4689999999965 45777889998876
No 495
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=20.83 E-value=1.8e+02 Score=27.20 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGE--MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~--~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++..-.-.. ......-.++...|..+...++|++|..+|.+
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345567788888777765432100 01112334555677777777888888887765
No 496
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=20.78 E-value=77 Score=25.17 Aligned_cols=26 Identities=15% Similarity=0.361 Sum_probs=21.1
Q ss_pred CcCccccCccCC--ccEEEcCCCeEEEe
Q 043572 941 SLCDSCHARLGT--KLFAMYPDDTIVCY 966 (997)
Q Consensus 941 ~~C~vC~k~l~~--~~f~v~p~g~~~H~ 966 (997)
..|+.||.+|-+ ...+|--+|.+++.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~F 31 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHF 31 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEE
Confidence 589999999965 45667789998875
No 497
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=20.69 E-value=6.6e+02 Score=25.33 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=56.1
Q ss_pred ceEEEEEEeCC-eEEEEEeEecCCcceEEEEe--CCEEEEEEC--CcEEEEEe--cCCcce---eeecCCCCCCCCceEE
Q 043572 203 KRLVLIELVNG-SFVILKEIQCMDGVKTMVWL--NDSIIVGTV--NGYSLFSC--VTGQSG---VIFTLPDVSCPPMLKL 272 (997)
Q Consensus 203 kki~i~~~~~~-~~~~~kei~~~~~~~~l~~~--~~~l~vg~~--~~y~lidl--~~g~~~---~l~~~~~~~~~p~i~~ 272 (997)
..-.+|.+..+ ....+.. ....+..++|. ++.++|+.. +....+|+ .+|... .+.........|--..
T Consensus 128 ~~~~l~~~d~~g~~~~~~~--~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~ 205 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKYFD--QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMC 205 (297)
T ss_dssp TCEEEEEECTTSCEEEEEE--EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEE
T ss_pred CCcEEEEEECCCCEEEEee--ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeE
Confidence 34567777643 3332211 12345788887 446888754 46778887 455432 2233322122344344
Q ss_pred cCCCCeEEEEe--CCeEEEEccC-CCccccccccC-CCCCeEEEeCc
Q 043572 273 LSKEQKVLLLV--DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGELSM 315 (997)
Q Consensus 273 ~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~~P 315 (997)
+..++.+.++. ++....+|.+ |+..+ .+.-+ ..|.++++..|
T Consensus 206 ~d~~G~lwva~~~~~~v~~~d~~tG~~~~-~i~~p~~~~t~~~f~g~ 251 (297)
T 3g4e_A 206 IDAEGKLWVACYNGGRVIRLDPVTGKRLQ-TVKLPVDKTTSCCFGGK 251 (297)
T ss_dssp EBTTSCEEEEEETTTEEEEECTTTCCEEE-EEECSSSBEEEEEEESG
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCceEEE-EEECCCCCceEEEEeCC
Confidence 54445666663 3445567875 77653 33322 34555555433
No 498
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=20.60 E-value=1.5e+02 Score=30.47 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=38.5
Q ss_pred HHHhcCChHHHHHHHHHHhhcc-h--hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 384 DLLRKKDFKEAISLAEELECEG-E--MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 384 ~Ll~~~~~eeAl~L~~~~~~~~-~--~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
-+...|++++|+...+..-... . ......-.++...|..++..++|++|++++.+
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3557889999988887653210 0 11223345667788999999999999999876
No 499
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=20.48 E-value=1.7e+02 Score=32.58 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=38.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhc-----chhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 383 KDLLRKKDFKEAISLAEELECE-----GEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~-----~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
..+...|+|++|+.+.++.-.- ++...+ +.......|..+..+|+|++|..+|.++
T Consensus 348 ~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 348 GVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-VASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3455789999999999775321 111122 2334445778899999999999999874
No 500
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=20.28 E-value=1.9e+02 Score=28.52 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=39.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhcch----hhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 383 KDLLRKKDFKEAISLAEELECEGE----MAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 383 ~~Ll~~~~~eeAl~L~~~~~~~~~----~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
..+...|++++|+..++....... ........+....|..++..++|++|..+|.+
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 556789999999999877542110 00112345667788889999999999999876
Done!