BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043574
(530 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04638|ITT1_YEAST Translation termination inhibitor protein ITT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ITT1 PE=1
SV=1
Length = 464
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 122 IFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAVYALSARVNAKEIDGVL 181
F L+ WHG N + +S S ++ + D V+ Y ++ AK VL
Sbjct: 324 CFDCLHAWHGYNNKCGKKVSLSTDIIEEYLDDTVTS--------YERKRKLEAKYGRRVL 375
Query: 182 ELRENGKRLSLEEETYLREGLVGLKLAKEVLNMQHEWRANAIANLNRTGGFSRSLANSCT 241
EL N YL E ++ L + KE N+Q + + + R+ G ++ C
Sbjct: 376 ELEVND---------YLAEKMLDLAIKKEGSNLQRCPKCKVV--VERSEGCNKMKCEVCG 424
Query: 242 DWPCLLIDLL 251
C + +L
Sbjct: 425 TLFCFICGVL 434
>sp|A0PNH7|LIPA_MYCUA Lipoyl synthase OS=Mycobacterium ulcerans (strain Agy99) GN=lipA
PE=3 SV=1
Length = 324
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 253 QAAEIDRFQPKLVINNIEVLRNAIQRMIQLYYSYRAYLD-------FGFIDIFISRETFG 305
Q E+ +P+++ +N+E + +R I+ ++Y+ LD FG + G
Sbjct: 175 QLGEVFEARPEVLAHNVETVPRVFKR-IRPAFTYQRSLDVLTAARQFGLVTKSNLILGMG 233
Query: 306 WTPQEAKMHMVTDYFSNSEWTVIAEVLGPNPRH 338
TP+E + +V + + + I + L P+PRH
Sbjct: 234 ETPEEVRTALVDLHDAGCDIITITQYLRPSPRH 266
>sp|B2HHL4|LIPA_MYCMM Lipoyl synthase OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=lipA PE=3 SV=1
Length = 324
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 253 QAAEIDRFQPKLVINNIEVLRNAIQRMIQLYYSYRAYLD-------FGFIDIFISRETFG 305
Q E+ +P+++ +N+E + +R I+ ++Y+ LD FG + G
Sbjct: 175 QLGEVFEARPEVLAHNVETVPRVFKR-IRPAFTYQRSLDVLTAARQFGLVTKSNLILGMG 233
Query: 306 WTPQEAKMHMVTDYFSNSEWTVIAEVLGPNPRH 338
TP+E + +V + + + I + L P+PRH
Sbjct: 234 ETPEEVRTALVDLHDAGCDIITITQYLRPSPRH 266
>sp|Q8WX94|NALP7_HUMAN NACHT, LRR and PYD domains-containing protein 7 OS=Homo sapiens
GN=NLRP7 PE=1 SV=1
Length = 980
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLK--DLNKEPHL-------------TGY 62
LN P +++HGP GVGKTTL + +L D N P L G
Sbjct: 161 LNPRTPRKLTPYTVVLHGPAGVGKTTLAKKCMLDWTDCNLSPTLRYAFYLSCKELSRMGP 220
Query: 63 VDFAESIKDHHPQHNQSFP 81
FAE I P+ P
Sbjct: 221 CSFAELISKDWPELQDDIP 239
>sp|A6UWR5|RFCL_META3 Replication factor C large subunit OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rfcL PE=3 SV=1
Length = 474
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 11/46 (23%)
Query: 10 PRPLLETVLNNHAQ-----------HHRVPQPLIIHGPRGVGKTTL 44
P+ + E V NN + H+ +P+P+++ GP G GKTTL
Sbjct: 9 PKTMSEIVGNNKIKEELKNWIEEILHNEIPKPVLLVGPPGCGKTTL 54
>sp|Q9P6I5|KGUA_SCHPO Guanylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC1198.05 PE=3 SV=1
Length = 202
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%), Gaps = 1/24 (4%)
Query: 29 QPLIIHGPRGVGKTTLFLERLLKD 52
+P+++ GP GVGK+TL L+RLLKD
Sbjct: 19 KPVVVFGPSGVGKSTL-LKRLLKD 41
>sp|Q3V0Q1|DYH12_MOUSE Dynein heavy chain 12, axonemal OS=Mus musculus GN=Dnah12 PE=1 SV=2
Length = 3086
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66
+PL+ GP G GK+ ++L+ L KE + YV+F+
Sbjct: 1880 KPLLFVGPTGTGKSVYVKDKLMNHLEKEKYFPFYVNFS 1917
>sp|Q80TN7|NAV3_MOUSE Neuron navigator 3 OS=Mus musculus GN=Nav3 PE=1 SV=2
Length = 2359
Score = 34.3 bits (77), Expect = 2.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 8 IIPRPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTL 44
+IP+P+ + N +HHR+ I+ GP G GKT L
Sbjct: 2007 LIPKPITQRYFNLLMEHHRI----ILSGPSGTGKTYL 2039
>sp|Q8IVL0|NAV3_HUMAN Neuron navigator 3 OS=Homo sapiens GN=NAV3 PE=1 SV=3
Length = 2385
Score = 34.3 bits (77), Expect = 2.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 8 IIPRPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTL 44
+IP+P+ + N +HHR+ I+ GP G GKT L
Sbjct: 2033 LIPKPITQRYFNLLMEHHRI----ILSGPSGTGKTYL 2065
>sp|Q07965|SRYA_DROSU Serendipity locus protein alpha OS=Drosophila subobscura
GN=Sry-alpha PE=2 SV=1
Length = 543
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 62 YVDFAESIKDHHPQHNQSFPWSSWSNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQ 121
++DFA +K H P+ +P +N + T+ C Q+ TC+ + ER I + S++
Sbjct: 35 FLDFASELKAHLPEVAPRWPAEGGTNIDVETIFLCLTQVVTCITQL-ERTINIEGASARA 93
Query: 122 IFTTLNKWHGLNT---ALRRIL 140
T + + H L+ +RRI+
Sbjct: 94 --TPMTRLHFLDRIDWCVRRII 113
>sp|Q7T2D0|SGSM3_DANRE Small G protein signaling modulator 3 OS=Danio rerio GN=sgsm3 PE=2
SV=1
Length = 755
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 92 TLSNCKAQLETCLESMAE----------------RGIKLGTISSQQIFTTLNKWHGLNTA 135
TLS+ +QLE + E R L I ++Q N H LNT
Sbjct: 337 TLSDLPSQLEDGAAVLGEAVRLAGSLSQENLDTHRHKHLAYILAEQAQLNSNNSHSLNTN 396
Query: 136 LRRILSKSNKKVKNAVSDKVSGSILW-ERAVYALSARVNAKEIDGVLELRENGKR 189
L +++ + N + K+ +S S+LW E V AL A+ N K+ + V LRE R
Sbjct: 397 LNKVVRRQNMRRKSTLS-----SLLWGEDEVEALKAK-NIKQTELVAALREAINR 445
>sp|Q3JES8|GLNE_NITOC Glutamate-ammonia-ligase adenylyltransferase OS=Nitrosococcus
oceani (strain ATCC 19707 / NCIMB 11848) GN=glnE PE=3
SV=1
Length = 969
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 198 LREGLVGLKLAKEVLNMQHEWRANAIANLNRTGGFSRSLANSCTDWPCLLIDLLSQAAEI 257
L+ L + A E N+ ++A + L G S +A +C WP LL+DL
Sbjct: 18 LKNDLARFQEALEQKNLDTVFKAKTLKTLCLVWGASEFVATNCIRWPSLLLDLQGSGNLF 77
Query: 258 DRFQPKLVINNIEVLRNAIQRMIQLYYSYRAYLDFGFIDIFISRETFGWT 307
++P + ++ I +L R + + I + R+ GW
Sbjct: 78 RAYEPNHYVKSLAQQLTNISTETELMVVLRRFRQREMVRI-VWRDLAGWA 126
>sp|Q9QEJ5|POLG_PESV Genome polyprotein OS=Porcine enteric sapovirus (isolate
Swine/United States/Cowden/1980) GN=ORF1 PE=1 SV=1
Length = 2254
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 13 LLETVLNNHAQ------HHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64
+++T +N AQ + P ++ GP G+GKT L +E L K L + H T VD
Sbjct: 436 VIQTTINELAQLMAYDTQRKPPAMVVFGGPPGIGKTRL-VEALAKQLGEVSHFTMTVD 492
>sp|Q8AYG3|TTK_DANRE Dual specificity protein kinase Ttk OS=Danio rerio GN=ttk PE=1 SV=2
Length = 982
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 341 ELYALKQSNYYQKVMEDRASTFEDIVDAYLAYLQITVVNPAMDKALLLLQK-FAFDAKNG 399
EL A++ N Q + S +D ++AY Q ++ M K ++LQK F +AK
Sbjct: 101 ELKAIQDVNDAQTSFDIARSHCKDFAFVHVAYAQFELLQGNMKKCTMILQKAFEMNAKPR 160
Query: 400 RVLEDKLR 407
VLE +R
Sbjct: 161 HVLEAAVR 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,001,796
Number of Sequences: 539616
Number of extensions: 7858727
Number of successful extensions: 24562
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 24553
Number of HSP's gapped (non-prelim): 26
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)