Query 043574
Match_columns 530
No_of_seqs 276 out of 525
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00151 potassium transporter 100.0 2E-40 4.2E-45 361.3 4.6 117 215-333 344-484 (852)
2 PLN00149 potassium transporter 100.0 1.6E-39 3.4E-44 353.2 5.0 117 215-333 268-411 (779)
3 PLN00148 potassium transporter 100.0 3.2E-39 6.9E-44 350.8 4.7 117 215-333 267-407 (785)
4 PLN00150 potassium ion transpo 100.0 5.2E-39 1.1E-43 349.0 4.6 117 215-333 284-424 (779)
5 TIGR00794 kup potassium uptake 100.0 1.3E-34 2.9E-39 312.3 5.1 117 215-333 238-378 (688)
6 PF02705 K_trans: K+ potassium 100.0 5.4E-33 1.2E-37 293.4 5.3 117 215-333 201-341 (534)
7 PRK10745 trkD potassium transp 100.0 1.6E-32 3.4E-37 293.5 4.9 117 215-333 212-352 (622)
8 COG3158 Kup K+ transporter [In 99.8 2.1E-21 4.6E-26 206.6 6.5 107 225-333 235-357 (627)
9 COG1126 GlnQ ABC-type polar am 99.8 1.3E-19 2.8E-24 176.4 4.2 87 17-106 17-123 (240)
10 COG3842 PotA ABC-type spermidi 99.7 1.3E-17 2.8E-22 169.9 4.9 80 25-107 28-124 (352)
11 COG3839 MalK ABC-type sugar tr 99.7 2.4E-17 5.2E-22 167.2 4.2 89 17-108 18-122 (338)
12 COG1116 TauB ABC-type nitrate/ 99.6 6.8E-16 1.5E-20 151.6 4.3 126 16-145 17-182 (248)
13 COG3840 ThiQ ABC-type thiamine 99.6 3.9E-15 8.4E-20 143.6 7.0 82 24-109 21-119 (231)
14 COG1118 CysA ABC-type sulfate/ 99.5 7.5E-15 1.6E-19 149.0 5.6 79 26-107 26-125 (345)
15 COG1125 OpuBA ABC-type proline 99.5 2.5E-14 5.4E-19 143.1 3.6 84 22-108 21-122 (309)
16 COG1135 AbcC ABC-type metal io 99.5 6E-14 1.3E-18 142.5 5.5 82 22-106 26-128 (339)
17 COG1136 SalX ABC-type antimicr 99.4 4.8E-14 1E-18 136.8 2.7 88 16-106 19-128 (226)
18 COG1117 PstB ABC-type phosphat 99.4 4.5E-13 9.7E-18 131.5 5.3 64 26-92 31-112 (253)
19 COG4161 ArtP ABC-type arginine 99.3 6E-13 1.3E-17 127.6 4.6 79 26-107 26-129 (242)
20 COG4175 ProV ABC-type proline/ 99.3 9.7E-13 2.1E-17 134.8 5.3 78 26-106 52-151 (386)
21 PRK11607 potG putrescine trans 99.3 6.1E-13 1.3E-17 135.3 2.7 87 18-107 35-137 (377)
22 TIGR03265 PhnT2 putative 2-ami 99.3 8.6E-13 1.9E-17 132.9 3.7 87 18-107 20-122 (353)
23 PRK11432 fbpC ferric transport 99.3 7.7E-13 1.7E-17 133.3 2.9 87 18-107 22-124 (351)
24 PRK11650 ugpC glycerol-3-phosp 99.3 2E-12 4.4E-17 130.3 4.4 86 18-106 20-121 (356)
25 COG3638 ABC-type phosphate/pho 99.3 3.2E-12 6.8E-17 126.4 4.7 83 26-112 28-142 (258)
26 PRK09452 potA putrescine/sperm 99.3 1.6E-12 3.5E-17 132.3 2.7 86 18-106 30-131 (375)
27 COG2884 FtsE Predicted ATPase 99.3 4.5E-12 9.9E-17 122.8 5.6 86 18-106 18-124 (223)
28 COG4181 Predicted ABC-type tra 99.2 3.3E-12 7.1E-17 123.0 3.5 86 18-106 26-133 (228)
29 COG4598 HisP ABC-type histidin 99.2 4.5E-12 9.7E-17 123.0 3.6 79 25-106 29-139 (256)
30 TIGR03258 PhnT 2-aminoethylpho 99.2 2.5E-12 5.5E-17 130.2 1.9 87 17-106 20-124 (362)
31 COG4525 TauB ABC-type taurine 99.2 1.2E-11 2.6E-16 121.0 5.7 77 9-92 16-99 (259)
32 PRK10851 sulfate/thiosulfate t 99.2 1.4E-11 3E-16 124.3 5.2 72 17-91 17-98 (353)
33 TIGR02314 ABC_MetN D-methionin 99.2 1.5E-11 3.2E-16 124.1 3.7 87 17-106 20-127 (343)
34 TIGR01186 proV glycine betaine 99.1 2.1E-11 4.5E-16 124.1 3.6 85 19-106 10-116 (363)
35 COG1127 Ttg2A ABC-type transpo 99.1 2.9E-11 6.2E-16 120.0 3.9 72 18-92 24-110 (263)
36 PRK11000 maltose/maltodextrin 99.1 2.1E-11 4.6E-16 123.2 2.7 87 17-106 18-120 (369)
37 TIGR02868 CydC thiol reductant 99.1 7.1E-11 1.5E-15 121.9 3.8 155 17-204 350-515 (529)
38 COG4619 ABC-type uncharacteriz 99.1 1.3E-10 2.7E-15 111.9 5.2 72 17-92 18-101 (223)
39 PRK11144 modC molybdate transp 99.0 1.5E-10 3.2E-15 116.1 5.1 77 26-105 22-114 (352)
40 PRK10790 putative multidrug tr 99.0 2.3E-10 5E-15 119.9 6.6 156 17-205 356-522 (592)
41 TIGR00960 3a0501s02 Type II (G 99.0 9.2E-11 2E-15 107.5 2.5 72 17-91 18-104 (216)
42 cd03266 ABC_NatA_sodium_export 99.0 1.8E-10 3.9E-15 105.5 3.3 71 17-90 20-101 (218)
43 TIGR03415 ABC_choXWV_ATP choli 99.0 2.2E-10 4.7E-15 117.7 4.2 78 27-107 49-152 (382)
44 cd03263 ABC_subfamily_A The AB 99.0 1.7E-10 3.8E-15 105.7 3.1 71 17-90 17-98 (220)
45 TIGR02142 modC_ABC molybdenum 99.0 3E-10 6.4E-15 113.9 5.0 64 26-92 21-100 (354)
46 cd03292 ABC_FtsE_transporter F 99.0 1.4E-10 3.1E-15 105.6 2.0 72 17-91 16-102 (214)
47 cd03224 ABC_TM1139_LivF_branch 99.0 2.5E-10 5.5E-15 104.5 3.4 72 17-91 15-99 (222)
48 TIGR02315 ABC_phnC phosphonate 99.0 4.1E-10 8.8E-15 104.7 4.6 72 17-91 17-103 (243)
49 COG0411 LivG ABC-type branched 99.0 1.6E-10 3.5E-15 114.3 1.8 65 23-91 25-103 (250)
50 cd03261 ABC_Org_Solvent_Resist 99.0 2.8E-10 6.2E-15 105.8 3.3 72 17-91 15-101 (235)
51 COG4136 ABC-type uncharacteriz 99.0 6.9E-10 1.5E-14 105.8 5.8 85 20-107 20-122 (213)
52 PRK11247 ssuB aliphatic sulfon 99.0 3.9E-10 8.5E-15 108.5 4.1 87 17-106 27-120 (257)
53 cd03296 ABC_CysA_sulfate_impor 99.0 5.2E-10 1.1E-14 104.5 4.6 72 17-91 17-98 (239)
54 cd03265 ABC_DrrA DrrA is the A 99.0 3.1E-10 6.8E-15 104.5 3.2 71 17-90 15-96 (220)
55 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.0 2.7E-10 5.9E-15 104.3 2.6 72 17-91 19-106 (218)
56 COG1124 DppF ABC-type dipeptid 99.0 6.7E-10 1.4E-14 110.0 5.4 89 16-107 21-128 (252)
57 COG1120 FepC ABC-type cobalami 99.0 5.5E-10 1.2E-14 110.5 4.7 79 25-107 25-126 (258)
58 cd03293 ABC_NrtD_SsuB_transpor 98.9 2.9E-10 6.4E-15 104.7 2.5 72 17-91 19-97 (220)
59 cd03259 ABC_Carb_Solutes_like 98.9 4.6E-10 1E-14 102.7 3.6 72 17-91 15-96 (213)
60 PRK11153 metN DL-methionine tr 98.9 2.6E-10 5.6E-15 114.0 2.0 72 17-91 20-106 (343)
61 cd03219 ABC_Mj1267_LivG_branch 98.9 3.7E-10 8E-15 104.6 2.9 72 17-91 15-99 (236)
62 PRK11174 cysteine/glutathione 98.9 4.8E-10 1E-14 117.2 4.0 155 17-205 365-531 (588)
63 cd03218 ABC_YhbG The ABC trans 98.9 4.5E-10 9.8E-15 103.7 3.4 71 17-90 15-98 (232)
64 cd03295 ABC_OpuCA_Osmoprotecti 98.9 4.3E-10 9.3E-15 105.2 3.2 72 17-91 16-99 (242)
65 cd03298 ABC_ThiQ_thiamine_tran 98.9 9.9E-10 2.1E-14 100.4 5.5 63 26-91 22-94 (211)
66 COG1132 MdlB ABC-type multidru 98.9 5.3E-10 1.1E-14 116.8 3.9 157 17-205 344-511 (567)
67 cd03235 ABC_Metallic_Cations A 98.9 7.9E-10 1.7E-14 101.2 4.6 72 17-91 14-94 (213)
68 TIGR01188 drrA daunorubicin re 98.9 3.7E-10 7.9E-15 110.2 2.6 71 17-90 8-89 (302)
69 cd03256 ABC_PhnC_transporter A 98.9 5.4E-10 1.2E-14 103.5 3.5 72 17-91 16-102 (241)
70 PRK10070 glycine betaine trans 98.9 5.7E-10 1.2E-14 115.2 3.9 63 26-91 52-130 (400)
71 cd03301 ABC_MalK_N The N-termi 98.9 6.2E-10 1.3E-14 101.6 3.6 72 17-91 15-96 (213)
72 TIGR02857 CydD thiol reductant 98.9 6.4E-10 1.4E-14 114.9 4.2 157 17-205 337-504 (529)
73 cd03262 ABC_HisP_GlnQ_permease 98.9 6.1E-10 1.3E-14 101.4 3.5 72 17-91 15-100 (213)
74 cd03254 ABCC_Glucan_exporter_l 98.9 7.6E-10 1.6E-14 102.1 4.2 73 17-92 18-101 (229)
75 COG1131 CcmA ABC-type multidru 98.9 5E-10 1.1E-14 110.4 3.0 88 17-107 20-124 (293)
76 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 7.1E-10 1.5E-14 118.6 4.4 155 17-204 468-633 (686)
77 PRK11248 tauB taurine transpor 98.9 6.5E-10 1.4E-14 106.1 3.7 72 17-91 16-94 (255)
78 cd03269 ABC_putative_ATPase Th 98.9 8.2E-10 1.8E-14 100.9 4.2 70 18-90 16-93 (210)
79 PRK11160 cysteine/glutathione 98.9 6.8E-10 1.5E-14 117.0 4.1 156 17-205 355-521 (574)
80 TIGR03608 L_ocin_972_ABC putat 98.9 5.1E-10 1.1E-14 101.4 2.5 71 17-90 13-99 (206)
81 PRK10908 cell division protein 98.9 6.2E-10 1.3E-14 102.7 2.9 72 17-91 17-103 (222)
82 PRK10895 lipopolysaccharide AB 98.9 9.3E-10 2E-14 102.7 4.1 72 17-91 18-102 (241)
83 PRK11176 lipid transporter ATP 98.9 9.3E-10 2E-14 114.7 4.5 156 17-205 358-526 (582)
84 cd03268 ABC_BcrA_bacitracin_re 98.9 4.7E-10 1E-14 102.3 2.0 72 17-91 15-96 (208)
85 cd03244 ABCC_MRP_domain2 Domai 98.9 1.4E-09 3.1E-14 99.8 5.1 72 17-91 19-101 (221)
86 cd03231 ABC_CcmA_heme_exporter 98.9 1E-09 2.2E-14 100.5 4.2 88 17-107 15-113 (201)
87 TIGR02673 FtsE cell division A 98.9 7.3E-10 1.6E-14 101.2 3.1 71 17-90 17-102 (214)
88 TIGR00958 3a01208 Conjugate Tr 98.9 8.9E-10 1.9E-14 119.2 4.2 86 17-105 496-592 (711)
89 PRK10771 thiQ thiamine transpo 98.9 1.8E-09 4E-14 100.5 5.7 79 26-107 23-117 (232)
90 COG4148 ModC ABC-type molybdat 98.9 1.1E-09 2.3E-14 111.6 4.3 61 29-92 25-101 (352)
91 cd03226 ABC_cobalt_CbiO_domain 98.9 7.3E-10 1.6E-14 101.1 2.8 73 17-92 15-97 (205)
92 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 9.5E-10 2.1E-14 117.9 4.0 153 17-202 494-658 (710)
93 PRK10247 putative ABC transpor 98.9 8.1E-10 1.8E-14 102.8 2.9 71 17-90 22-103 (225)
94 PRK13537 nodulation ABC transp 98.9 6.2E-10 1.4E-14 109.6 2.3 71 17-90 22-103 (306)
95 TIGR01277 thiQ thiamine ABC tr 98.9 1.8E-09 3.9E-14 99.3 5.1 64 25-91 21-94 (213)
96 TIGR02204 MsbA_rel ABC transpo 98.9 1E-09 2.3E-14 114.0 3.9 155 17-203 355-520 (576)
97 cd03258 ABC_MetN_methionine_tr 98.9 7.1E-10 1.5E-14 102.7 2.4 71 17-90 20-105 (233)
98 COG2274 SunT ABC-type bacterio 98.9 1.5E-09 3.2E-14 119.5 5.2 74 16-92 487-571 (709)
99 cd03264 ABC_drug_resistance_li 98.9 7.8E-10 1.7E-14 101.1 2.6 60 27-90 25-95 (211)
100 TIGR01166 cbiO cobalt transpor 98.9 1E-09 2.2E-14 99.1 3.2 71 17-90 7-92 (190)
101 cd03250 ABCC_MRP_domain1 Domai 98.9 1.7E-09 3.7E-14 98.6 4.7 71 17-92 20-90 (204)
102 cd03245 ABCC_bacteriocin_expor 98.9 1.6E-09 3.5E-14 99.4 4.4 73 17-92 19-102 (220)
103 TIGR02211 LolD_lipo_ex lipopro 98.9 8E-10 1.7E-14 101.4 2.4 71 17-90 20-106 (221)
104 PRK11629 lolD lipoprotein tran 98.9 8.1E-10 1.8E-14 102.9 2.5 71 17-90 24-110 (233)
105 PRK13646 cbiO cobalt transport 98.9 8.2E-10 1.8E-14 107.0 2.6 72 17-91 22-110 (286)
106 PRK13540 cytochrome c biogenes 98.9 8.5E-10 1.8E-14 100.8 2.5 72 17-91 16-98 (200)
107 TIGR03410 urea_trans_UrtE urea 98.9 1.2E-09 2.5E-14 101.1 3.1 72 17-91 15-99 (230)
108 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 1.3E-09 2.7E-14 101.8 3.3 71 17-90 16-97 (236)
109 PRK09493 glnQ glutamine ABC tr 98.9 1.2E-09 2.5E-14 102.0 3.1 72 17-91 16-101 (240)
110 PRK13657 cyclic beta-1,2-gluca 98.9 1.4E-09 3.1E-14 114.2 4.0 73 17-92 350-433 (588)
111 TIGR02324 CP_lyasePhnL phospho 98.9 1.4E-09 3E-14 100.3 3.5 71 17-90 23-113 (224)
112 PRK14269 phosphate ABC transpo 98.9 1.7E-09 3.7E-14 101.7 4.0 72 17-91 17-102 (246)
113 TIGR01193 bacteriocin_ABC ABC- 98.9 1.3E-09 2.8E-14 117.0 3.6 154 17-203 489-655 (708)
114 PRK11614 livF leucine/isoleuci 98.9 1.7E-09 3.7E-14 100.8 3.9 72 17-91 20-104 (237)
115 TIGR03411 urea_trans_UrtD urea 98.9 1.4E-09 3E-14 101.4 3.4 72 17-91 17-101 (242)
116 PRK13637 cbiO cobalt transport 98.9 1.8E-09 3.8E-14 105.0 4.1 87 17-106 22-129 (287)
117 TIGR03005 ectoine_ehuA ectoine 98.9 1.6E-09 3.4E-14 102.1 3.6 71 17-90 15-110 (252)
118 TIGR03375 type_I_sec_LssB type 98.8 1.4E-09 3E-14 116.5 3.7 156 17-205 480-647 (694)
119 cd03260 ABC_PstB_phosphate_tra 98.8 1.2E-09 2.6E-14 100.8 2.7 72 17-91 15-104 (227)
120 TIGR03522 GldA_ABC_ATP gliding 98.8 1.6E-09 3.5E-14 105.9 3.7 71 17-90 17-98 (301)
121 PRK14250 phosphate ABC transpo 98.8 1.7E-09 3.7E-14 101.6 3.6 73 17-92 18-101 (241)
122 cd03290 ABCC_SUR1_N The SUR do 98.8 3.2E-09 6.9E-14 97.8 5.3 73 17-92 16-103 (218)
123 COG4988 CydD ABC-type transpor 98.8 4.5E-09 9.7E-14 113.4 7.2 160 22-214 341-511 (559)
124 PRK11264 putative amino-acid A 98.8 1.5E-09 3.3E-14 101.5 3.2 71 17-90 18-108 (250)
125 KOG0055 Multidrug/pheromone ex 98.8 2.1E-09 4.6E-14 123.5 4.9 86 16-105 1004-1101(1228)
126 cd03252 ABCC_Hemolysin The ABC 98.8 2.2E-09 4.7E-14 99.8 4.0 73 17-92 17-100 (237)
127 TIGR01187 potA spermidine/putr 98.8 1.2E-09 2.5E-14 108.5 2.3 56 33-91 1-66 (325)
128 cd03369 ABCC_NFT1 Domain 2 of 98.8 3E-09 6.5E-14 97.2 4.6 72 17-91 23-105 (207)
129 PRK13650 cbiO cobalt transport 98.8 1.4E-09 3E-14 105.1 2.5 72 17-91 22-106 (279)
130 TIGR02203 MsbA_lipidA lipid A 98.8 2.3E-09 5.1E-14 111.1 4.3 87 17-107 347-446 (571)
131 COG3845 ABC-type uncharacteriz 98.8 3.4E-09 7.4E-14 112.9 5.6 64 26-92 28-104 (501)
132 TIGR01288 nodI ATP-binding ABC 98.8 1.4E-09 3.1E-14 106.2 2.5 71 17-90 19-100 (303)
133 PRK13538 cytochrome c biogenes 98.8 1.7E-09 3.8E-14 99.0 2.9 72 17-91 16-98 (204)
134 PRK10584 putative ABC transpor 98.8 1.7E-09 3.8E-14 99.9 2.8 70 18-90 26-111 (228)
135 PRK13651 cobalt transporter AT 98.8 2.1E-09 4.6E-14 106.2 3.4 72 17-91 22-130 (305)
136 PRK13647 cbiO cobalt transport 98.8 1.7E-09 3.7E-14 104.3 2.6 72 17-91 20-104 (274)
137 cd03225 ABC_cobalt_CbiO_domain 98.8 2E-09 4.3E-14 98.2 2.9 71 17-90 16-99 (211)
138 PRK11124 artP arginine transpo 98.8 2.2E-09 4.7E-14 100.3 3.2 71 17-90 17-105 (242)
139 cd03251 ABCC_MsbA MsbA is an e 98.8 2.7E-09 5.8E-14 98.8 3.8 73 17-92 17-100 (234)
140 PRK10789 putative multidrug tr 98.8 2.6E-09 5.6E-14 112.4 4.0 155 17-203 330-495 (569)
141 PRK11300 livG leucine/isoleuci 98.8 2.6E-09 5.5E-14 100.3 3.5 72 17-91 20-104 (255)
142 PRK13548 hmuV hemin importer A 98.8 3.1E-09 6.8E-14 101.2 4.2 72 17-91 17-100 (258)
143 cd03294 ABC_Pro_Gly_Bertaine T 98.8 2.1E-09 4.6E-14 103.2 2.9 63 26-91 48-126 (269)
144 PRK10575 iron-hydroxamate tran 98.8 3E-09 6.4E-14 101.5 3.8 72 17-91 26-109 (265)
145 TIGR01184 ntrCD nitrate transp 98.8 4.5E-09 9.7E-14 98.4 4.9 63 26-91 9-78 (230)
146 PRK11831 putative ABC transpor 98.8 3E-09 6.4E-14 102.0 3.8 71 18-91 23-108 (269)
147 PRK13634 cbiO cobalt transport 98.8 1.6E-09 3.5E-14 105.4 2.0 72 17-91 22-110 (290)
148 PRK10762 D-ribose transporter 98.8 2.9E-09 6.3E-14 110.2 3.9 72 17-91 19-103 (501)
149 TIGR01842 type_I_sec_PrtD type 98.8 9.8E-09 2.1E-13 107.2 7.7 157 17-206 333-501 (544)
150 PRK14247 phosphate ABC transpo 98.8 2.6E-09 5.7E-14 100.2 3.2 71 17-90 18-105 (250)
151 TIGR01978 sufC FeS assembly AT 98.8 3.5E-09 7.7E-14 98.3 4.0 71 17-90 15-100 (243)
152 PRK14267 phosphate ABC transpo 98.8 2.8E-09 6.2E-14 100.1 3.4 71 17-90 19-108 (253)
153 cd03234 ABCG_White The White s 98.8 2.2E-09 4.9E-14 99.5 2.6 72 16-90 21-104 (226)
154 PRK10744 pstB phosphate transp 98.8 3.3E-09 7.1E-14 100.8 3.8 72 17-91 28-117 (260)
155 cd03299 ABC_ModC_like Archeal 98.8 3.4E-09 7.3E-14 99.3 3.8 72 17-91 14-95 (235)
156 cd03223 ABCD_peroxisomal_ALDP 98.8 3.1E-09 6.7E-14 95.4 3.3 71 17-90 16-86 (166)
157 cd03230 ABC_DR_subfamily_A Thi 98.8 4.2E-09 9.1E-14 94.5 4.1 71 17-90 15-96 (173)
158 PRK14242 phosphate transporter 98.8 2.9E-09 6.3E-14 100.1 3.3 72 17-91 21-110 (253)
159 PRK13643 cbiO cobalt transport 98.8 2.4E-09 5.1E-14 104.1 2.7 72 17-91 21-109 (288)
160 cd03253 ABCC_ATM1_transporter 98.8 3.7E-09 8.1E-14 97.9 3.7 73 17-92 16-99 (236)
161 PRK14235 phosphate transporter 98.8 2.6E-09 5.7E-14 102.2 2.7 72 17-91 34-123 (267)
162 PRK15439 autoinducer 2 ABC tra 98.8 3.8E-09 8.3E-14 109.9 4.1 88 17-107 26-128 (510)
163 TIGR01846 type_I_sec_HlyB type 98.8 3.7E-09 8E-14 113.5 4.1 156 17-205 472-639 (694)
164 PRK14237 phosphate transporter 98.8 3.2E-09 6.8E-14 101.7 3.2 72 17-91 35-124 (267)
165 PRK10619 histidine/lysine/argi 98.8 6.6E-09 1.4E-13 98.3 5.2 71 17-90 20-115 (257)
166 KOG0055 Multidrug/pheromone ex 98.8 3.7E-09 7.9E-14 121.6 4.1 78 11-92 363-451 (1228)
167 PRK15079 oligopeptide ABC tran 98.8 2.1E-09 4.5E-14 107.6 1.9 71 17-90 36-123 (331)
168 TIGR00972 3a0107s01c2 phosphat 98.8 3.5E-09 7.6E-14 99.4 3.2 71 17-90 16-104 (247)
169 TIGR01189 ccmA heme ABC export 98.8 2.6E-09 5.6E-14 97.3 2.2 71 17-90 15-96 (198)
170 PRK14249 phosphate ABC transpo 98.8 4.7E-09 1E-13 98.8 4.0 72 17-91 19-108 (251)
171 PF00005 ABC_tran: ABC transpo 98.8 9.3E-10 2E-14 93.1 -0.7 77 25-111 8-96 (137)
172 PRK13536 nodulation factor exp 98.8 4.4E-09 9.5E-14 105.8 3.9 70 18-90 57-137 (340)
173 TIGR02982 heterocyst_DevA ABC 98.8 2.2E-09 4.8E-14 99.2 1.5 70 18-90 21-105 (220)
174 PRK13632 cbiO cobalt transport 98.8 3E-09 6.4E-14 102.0 2.5 72 17-91 24-108 (271)
175 cd03297 ABC_ModC_molybdenum_tr 98.8 5.8E-09 1.3E-13 95.8 4.1 62 26-91 22-99 (214)
176 PRK13631 cbiO cobalt transport 98.8 3.6E-09 7.8E-14 105.3 2.9 72 17-91 41-141 (320)
177 PRK09700 D-allose transporter 98.8 5.3E-09 1.1E-13 108.3 4.1 72 17-91 20-104 (510)
178 PRK10253 iron-enterobactin tra 98.8 6.2E-09 1.3E-13 99.4 4.2 72 17-91 22-105 (265)
179 COG1122 CbiO ABC-type cobalt t 98.7 8.6E-09 1.9E-13 100.1 5.1 81 26-109 28-128 (235)
180 TIGR00968 3a0106s01 sulfate AB 98.7 4.3E-09 9.2E-14 98.8 2.9 71 17-90 15-95 (237)
181 PRK13640 cbiO cobalt transport 98.7 3.3E-09 7.2E-14 102.7 2.2 72 17-91 22-109 (282)
182 PRK13648 cbiO cobalt transport 98.7 3.9E-09 8.4E-14 101.0 2.7 72 17-91 24-108 (269)
183 PRK14241 phosphate transporter 98.7 3.9E-09 8.4E-14 100.0 2.6 71 17-90 19-108 (258)
184 PRK14244 phosphate ABC transpo 98.7 4.5E-09 9.8E-14 98.9 3.1 72 17-91 20-109 (251)
185 cd03289 ABCC_CFTR2 The CFTR su 98.7 6.2E-09 1.3E-13 101.9 3.9 70 17-90 19-99 (275)
186 PRK14256 phosphate ABC transpo 98.7 7.3E-09 1.6E-13 97.6 4.2 71 17-90 19-108 (252)
187 PRK14273 phosphate ABC transpo 98.7 6.2E-09 1.3E-13 98.2 3.7 72 17-91 22-111 (254)
188 cd03267 ABC_NatA_like Similar 98.7 4.9E-09 1.1E-13 98.5 3.0 71 17-90 36-118 (236)
189 PRK09536 btuD corrinoid ABC tr 98.7 5.5E-09 1.2E-13 108.0 3.6 72 17-91 18-101 (402)
190 cd03246 ABCC_Protease_Secretio 98.7 5.5E-09 1.2E-13 93.7 3.1 69 17-88 17-96 (173)
191 TIGR03269 met_CoM_red_A2 methy 98.7 4.5E-09 9.7E-14 109.1 2.9 88 17-107 15-156 (520)
192 PRK14259 phosphate ABC transpo 98.7 6.9E-09 1.5E-13 99.7 3.9 71 18-91 29-117 (269)
193 PRK14240 phosphate transporter 98.7 6.4E-09 1.4E-13 97.6 3.5 72 17-91 18-107 (250)
194 TIGR01192 chvA glucan exporter 98.7 6.8E-09 1.5E-13 109.9 4.1 155 17-203 350-515 (585)
195 PRK10982 galactose/methyl gala 98.7 7.8E-09 1.7E-13 106.6 4.4 72 17-91 13-97 (491)
196 PRK13649 cbiO cobalt transport 98.7 4.4E-09 9.5E-14 100.9 2.4 71 17-90 22-109 (280)
197 PRK14270 phosphate ABC transpo 98.7 7.6E-09 1.7E-13 97.4 3.9 72 17-91 19-108 (251)
198 KOG0058 Peptide exporter, ABC 98.7 8.8E-09 1.9E-13 113.5 4.9 73 17-92 483-566 (716)
199 PRK14246 phosphate ABC transpo 98.7 5.8E-09 1.3E-13 99.8 3.1 72 17-91 25-114 (257)
200 PRK09984 phosphonate/organopho 98.7 8.5E-09 1.8E-13 97.9 4.1 71 17-91 19-110 (262)
201 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 6.6E-09 1.4E-13 96.7 3.3 73 17-92 18-101 (238)
202 TIGR03269 met_CoM_red_A2 methy 98.7 5.9E-09 1.3E-13 108.2 3.2 70 18-90 300-388 (520)
203 cd03248 ABCC_TAP TAP, the Tran 98.7 4.4E-09 9.5E-14 97.1 2.0 73 17-92 29-112 (226)
204 PRK14268 phosphate ABC transpo 98.7 5.3E-09 1.1E-13 99.3 2.6 72 17-91 27-116 (258)
205 cd03233 ABC_PDR_domain1 The pl 98.7 4.5E-09 9.7E-14 96.9 2.0 71 17-90 22-106 (202)
206 PLN03232 ABC transporter C fam 98.7 7.3E-09 1.6E-13 121.1 4.2 86 16-105 1250-1346(1495)
207 PRK13633 cobalt transporter AT 98.7 6.9E-09 1.5E-13 100.2 3.2 87 17-106 25-131 (280)
208 PRK13549 xylose transporter AT 98.7 7.5E-09 1.6E-13 107.3 3.8 72 17-91 20-106 (506)
209 PRK13635 cbiO cobalt transport 98.7 6.9E-09 1.5E-13 100.5 3.1 72 17-91 22-106 (279)
210 PRK15064 ABC transporter ATP-b 98.7 8E-09 1.7E-13 107.7 3.7 73 17-92 16-89 (530)
211 PRK13636 cbiO cobalt transport 98.7 6.6E-09 1.4E-13 100.7 2.6 71 17-90 21-106 (283)
212 PRK11308 dppF dipeptide transp 98.7 8.9E-09 1.9E-13 102.9 3.6 71 17-90 30-117 (327)
213 PTZ00265 multidrug resistance 98.7 9.7E-09 2.1E-13 120.2 4.3 157 17-205 1183-1404(1466)
214 PRK11288 araG L-arabinose tran 98.7 8.5E-09 1.8E-13 106.8 3.4 72 17-91 19-103 (501)
215 PRK14248 phosphate ABC transpo 98.7 8.8E-09 1.9E-13 98.3 3.3 72 17-91 36-125 (268)
216 PRK14274 phosphate ABC transpo 98.7 8.5E-09 1.8E-13 97.7 3.1 72 17-91 27-116 (259)
217 PRK11231 fecE iron-dicitrate t 98.7 1.2E-08 2.5E-13 96.6 4.0 72 17-91 17-100 (255)
218 TIGR00955 3a01204 The Eye Pigm 98.7 7.1E-09 1.5E-13 110.9 2.8 90 16-108 39-149 (617)
219 PRK11819 putative ABC transpor 98.7 6E-09 1.3E-13 109.7 2.2 73 17-92 22-95 (556)
220 TIGR02769 nickel_nikE nickel i 98.7 7E-09 1.5E-13 99.0 2.4 71 17-90 26-113 (265)
221 PRK14261 phosphate ABC transpo 98.7 1.3E-08 2.7E-13 96.1 4.1 72 17-91 21-110 (253)
222 PRK13539 cytochrome c biogenes 98.7 8.1E-09 1.8E-13 95.1 2.7 71 17-90 17-96 (207)
223 PRK09700 D-allose transporter 98.7 1.8E-08 4E-13 104.4 5.5 72 17-91 278-365 (510)
224 TIGR03873 F420-0_ABC_ATP propo 98.7 1.2E-08 2.7E-13 96.5 3.9 72 17-91 16-99 (256)
225 cd03300 ABC_PotA_N PotA is an 98.7 1E-08 2.2E-13 95.8 3.2 71 17-90 15-95 (232)
226 PRK14243 phosphate transporter 98.7 1.2E-08 2.7E-13 97.5 3.8 73 17-92 25-115 (264)
227 PRK03695 vitamin B12-transport 98.7 1.5E-08 3.3E-13 96.1 4.4 87 17-107 11-114 (248)
228 cd03247 ABCC_cytochrome_bd The 98.7 1.5E-08 3.3E-13 91.0 4.2 69 17-88 17-95 (178)
229 PRK13642 cbiO cobalt transport 98.7 7E-09 1.5E-13 100.0 2.1 72 17-91 22-106 (277)
230 TIGR03740 galliderm_ABC gallid 98.7 7.9E-09 1.7E-13 95.5 2.3 71 17-90 15-93 (223)
231 PLN03130 ABC transporter C fam 98.7 1.1E-08 2.4E-13 120.7 4.1 155 16-203 1253-1418(1622)
232 TIGR03771 anch_rpt_ABC anchore 98.7 3.1E-08 6.7E-13 92.4 6.1 63 26-91 4-75 (223)
233 cd03228 ABCC_MRP_Like The MRP 98.7 1.1E-08 2.3E-13 91.7 2.9 69 17-88 17-96 (171)
234 PRK14239 phosphate transporter 98.7 1E-08 2.3E-13 96.1 2.9 71 17-90 20-108 (252)
235 PRK15112 antimicrobial peptide 98.7 1.1E-08 2.4E-13 97.9 3.0 71 17-90 28-112 (267)
236 PRK13543 cytochrome c biogenes 98.7 1.6E-08 3.4E-13 93.6 3.8 71 17-90 26-105 (214)
237 TIGR00954 3a01203 Peroxysomal 98.7 1.6E-08 3.5E-13 109.3 4.5 144 25-202 475-625 (659)
238 PRK13652 cbiO cobalt transport 98.7 9.7E-09 2.1E-13 99.0 2.5 71 17-90 19-102 (277)
239 PRK14251 phosphate ABC transpo 98.7 1.4E-08 3.1E-13 95.4 3.5 72 17-91 19-108 (251)
240 TIGR02633 xylG D-xylose ABC tr 98.7 1.5E-08 3.2E-13 104.6 3.8 72 17-91 16-102 (500)
241 PRK13638 cbiO cobalt transport 98.7 1.2E-08 2.6E-13 97.7 2.9 71 17-90 16-101 (271)
242 PRK13541 cytochrome c biogenes 98.6 2.2E-08 4.8E-13 91.2 4.4 62 26-90 24-93 (195)
243 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 1E-08 2.2E-13 107.8 2.4 73 17-92 20-93 (552)
244 PRK14254 phosphate ABC transpo 98.6 1.2E-08 2.5E-13 99.4 2.6 71 17-90 54-142 (285)
245 PRK14275 phosphate ABC transpo 98.6 1.4E-08 3.1E-13 98.7 3.2 72 17-91 54-143 (286)
246 PRK14253 phosphate ABC transpo 98.6 1.7E-08 3.8E-13 94.7 3.7 72 17-91 18-106 (249)
247 COG0410 LivF ABC-type branched 98.6 3.1E-08 6.8E-13 97.6 5.6 64 25-92 26-103 (237)
248 PRK14262 phosphate ABC transpo 98.6 1.4E-08 3.1E-13 95.3 3.0 71 17-90 18-106 (250)
249 PRK13644 cbiO cobalt transport 98.6 1.2E-08 2.7E-13 98.3 2.5 72 17-91 17-102 (274)
250 PRK14266 phosphate ABC transpo 98.6 1.6E-08 3.4E-13 95.0 3.1 72 17-91 18-107 (250)
251 COG1129 MglA ABC-type sugar tr 98.6 1.9E-08 4.1E-13 107.5 4.1 73 18-92 24-108 (500)
252 PRK13645 cbiO cobalt transport 98.6 1.1E-08 2.4E-13 99.0 2.1 71 17-90 26-114 (289)
253 cd03213 ABCG_EPDR ABCG transpo 98.6 1.9E-08 4E-13 92.3 3.4 70 17-89 24-104 (194)
254 PRK14272 phosphate ABC transpo 98.6 1.6E-08 3.4E-13 94.9 2.9 71 17-90 19-108 (252)
255 PRK09544 znuC high-affinity zi 98.6 2.3E-08 5E-13 95.8 4.1 71 17-90 19-92 (251)
256 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 3.6E-08 7.9E-13 97.7 5.6 87 17-107 19-127 (254)
257 PRK13641 cbiO cobalt transport 98.6 1.4E-08 3.1E-13 98.6 2.6 71 17-90 22-109 (287)
258 cd03288 ABCC_SUR2 The SUR doma 98.6 3.2E-08 6.8E-13 94.2 4.9 72 17-91 36-118 (257)
259 PRK13639 cbiO cobalt transport 98.6 1.1E-08 2.3E-13 98.7 1.7 71 17-90 17-102 (275)
260 TIGR01194 cyc_pep_trnsptr cycl 98.6 2.2E-08 4.8E-13 105.3 4.1 69 17-88 357-436 (555)
261 PRK14255 phosphate ABC transpo 98.6 2.8E-08 6E-13 93.5 4.2 72 17-91 20-109 (252)
262 PLN03211 ABC transporter G-25; 98.6 1.8E-08 4E-13 109.5 3.3 88 17-107 83-189 (659)
263 cd03257 ABC_NikE_OppD_transpor 98.6 1.8E-08 4E-13 92.5 2.8 71 17-90 20-107 (228)
264 PRK14238 phosphate transporter 98.6 1.8E-08 3.9E-13 96.9 2.8 71 17-90 39-127 (271)
265 PTZ00243 ABC transporter; Prov 98.6 2.9E-08 6.2E-13 116.8 4.8 156 17-204 1325-1491(1560)
266 PRK14252 phosphate ABC transpo 98.6 2.3E-08 5.1E-13 95.3 3.3 72 17-91 31-122 (265)
267 PRK14258 phosphate ABC transpo 98.6 2.5E-08 5.3E-13 95.1 3.4 71 17-90 22-110 (261)
268 PRK14260 phosphate ABC transpo 98.6 2.2E-08 4.9E-13 95.1 3.1 72 17-91 22-111 (259)
269 PRK14236 phosphate transporter 98.6 2.5E-08 5.5E-13 95.8 3.4 72 17-91 40-129 (272)
270 cd03215 ABC_Carb_Monos_II This 98.6 1.8E-08 3.8E-13 91.2 2.2 71 17-90 15-101 (182)
271 PRK13547 hmuV hemin importer A 98.6 3.7E-08 8E-13 95.7 4.4 72 17-91 16-107 (272)
272 PRK09473 oppD oligopeptide tra 98.6 2.5E-08 5.3E-13 99.8 3.2 70 18-90 32-122 (330)
273 PRK14271 phosphate ABC transpo 98.6 3.1E-08 6.6E-13 95.9 3.7 72 17-91 36-124 (276)
274 PRK10261 glutathione transport 98.6 3.2E-08 6.9E-13 106.1 4.1 62 26-90 348-426 (623)
275 TIGR02633 xylG D-xylose ABC tr 98.6 4.8E-08 1E-12 100.9 5.2 71 18-91 276-363 (500)
276 PRK15177 Vi polysaccharide exp 98.6 1.9E-08 4.1E-13 93.9 2.0 69 17-90 2-72 (213)
277 COG4555 NatA ABC-type Na+ tran 98.6 3.9E-08 8.5E-13 96.7 4.2 79 25-106 25-120 (245)
278 cd03291 ABCC_CFTR1 The CFTR su 98.6 5.3E-08 1.1E-12 95.7 5.1 71 17-92 52-122 (282)
279 cd03232 ABC_PDR_domain2 The pl 98.6 1.6E-08 3.5E-13 92.3 1.5 71 17-90 22-102 (192)
280 TIGR00957 MRP_assoc_pro multi 98.6 4.1E-08 9E-13 115.1 5.0 154 16-203 1300-1465(1522)
281 PRK10522 multidrug transporter 98.6 2.9E-08 6.4E-13 103.9 3.3 68 17-87 338-416 (547)
282 PRK14245 phosphate ABC transpo 98.6 2.5E-08 5.5E-13 93.8 2.5 72 17-91 18-107 (250)
283 PRK15064 ABC transporter ATP-b 98.6 3.3E-08 7.1E-13 103.1 3.6 70 17-89 334-406 (530)
284 PRK10261 glutathione transport 98.6 3.1E-08 6.6E-13 106.3 3.2 87 18-107 32-153 (623)
285 TIGR02770 nickel_nikD nickel i 98.6 3.1E-08 6.7E-13 92.4 2.8 62 25-89 9-86 (230)
286 KOG0061 Transporter, ABC super 98.6 4.7E-08 1E-12 105.8 4.6 104 13-117 41-163 (613)
287 KOG0057 Mitochondrial Fe/S clu 98.6 4.1E-08 9E-13 106.1 4.1 64 25-92 375-449 (591)
288 PRK14263 phosphate ABC transpo 98.6 3.5E-08 7.5E-13 94.7 3.0 71 18-91 24-112 (261)
289 PRK10762 D-ribose transporter 98.6 5.6E-08 1.2E-12 100.8 4.7 71 18-91 268-354 (501)
290 cd03237 ABC_RNaseL_inhibitor_d 98.5 6.1E-08 1.3E-12 93.0 4.6 60 27-90 24-84 (246)
291 COG1137 YhbG ABC-type (unclass 98.5 1.7E-08 3.7E-13 99.2 0.8 85 25-112 27-132 (243)
292 PRK15056 manganese/iron transp 98.5 6.8E-08 1.5E-12 92.8 4.9 71 17-90 22-103 (272)
293 PRK14257 phosphate ABC transpo 98.5 3.9E-08 8.4E-13 98.6 3.2 72 17-91 97-186 (329)
294 CHL00131 ycf16 sulfate ABC tra 98.5 5.7E-08 1.2E-12 91.2 3.8 71 17-90 22-107 (252)
295 COG1123 ATPase components of v 98.5 7.6E-08 1.6E-12 103.8 5.1 78 26-106 315-415 (539)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 5E-08 1.1E-12 102.6 3.6 72 17-91 337-410 (552)
297 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 6.2E-08 1.3E-12 90.7 3.8 70 17-90 37-107 (224)
298 PRK14264 phosphate ABC transpo 98.5 5.6E-08 1.2E-12 95.5 3.7 72 17-91 60-149 (305)
299 cd03229 ABC_Class3 This class 98.5 6.5E-08 1.4E-12 87.2 3.7 70 18-90 16-99 (178)
300 PTZ00265 multidrug resistance 98.5 4.1E-08 8.9E-13 115.1 2.9 72 17-91 400-483 (1466)
301 PRK10419 nikE nickel transport 98.5 3.8E-08 8.3E-13 94.5 2.1 70 17-89 27-113 (268)
302 PRK15093 antimicrobial peptide 98.5 6.2E-08 1.4E-12 96.5 3.6 69 18-89 23-113 (330)
303 PRK11288 araG L-arabinose tran 98.5 9.4E-08 2E-12 99.1 5.0 72 17-91 268-355 (501)
304 PRK11022 dppD dipeptide transp 98.5 3.9E-08 8.5E-13 98.1 1.9 70 17-89 22-113 (326)
305 PRK13549 xylose transporter AT 98.5 1.1E-07 2.5E-12 98.6 5.3 72 17-91 277-365 (506)
306 PRK14265 phosphate ABC transpo 98.5 7.1E-08 1.5E-12 93.2 3.4 72 17-91 35-124 (274)
307 PLN03232 ABC transporter C fam 98.5 9.2E-08 2E-12 112.1 5.0 84 17-105 632-715 (1495)
308 PRK11701 phnK phosphonate C-P 98.5 6.4E-08 1.4E-12 91.8 2.9 46 17-64 21-66 (258)
309 PRK11819 putative ABC transpor 98.5 7E-08 1.5E-12 101.8 3.4 71 18-91 340-412 (556)
310 KOG0056 Heavy metal exporter H 98.5 1.2E-07 2.6E-12 102.6 5.0 65 25-92 561-636 (790)
311 cd03217 ABC_FeS_Assembly ABC-t 98.5 8.1E-08 1.8E-12 88.3 2.8 66 17-85 15-94 (200)
312 PRK15134 microcin C ABC transp 98.5 7.2E-08 1.6E-12 100.6 2.7 71 17-91 301-388 (529)
313 COG4618 ArpD ABC-type protease 98.5 4.2E-07 9.1E-12 98.1 8.5 147 26-208 360-521 (580)
314 PLN03130 ABC transporter C fam 98.4 1.4E-07 3E-12 111.6 4.9 83 17-105 632-715 (1622)
315 PRK10418 nikD nickel transport 98.4 1E-07 2.2E-12 90.4 3.1 69 17-88 18-102 (254)
316 TIGR01271 CFTR_protein cystic 98.4 1E-07 2.2E-12 111.7 3.8 154 16-203 1233-1397(1490)
317 cd03236 ABC_RNaseL_inhibitor_d 98.4 2.2E-07 4.7E-12 89.9 5.3 43 17-62 16-58 (255)
318 TIGR01257 rim_protein retinal- 98.4 6.2E-08 1.3E-12 117.3 1.7 79 26-107 954-1049(2272)
319 PRK15134 microcin C ABC transp 98.4 8E-08 1.7E-12 100.3 2.1 70 17-89 24-116 (529)
320 COG4987 CydC ABC-type transpor 98.4 1.5E-07 3.2E-12 101.8 4.1 74 16-92 352-436 (573)
321 PRK11147 ABC transporter ATPas 98.4 1.3E-07 2.8E-12 101.6 3.7 71 18-91 335-407 (635)
322 PRK13409 putative ATPase RIL; 98.4 2.2E-07 4.8E-12 100.0 5.2 60 26-90 363-423 (590)
323 PRK10535 macrolide transporter 98.4 1.2E-07 2.6E-12 102.3 2.7 87 18-107 24-132 (648)
324 TIGR00956 3a01205 Pleiotropic 98.4 1.6E-07 3.4E-12 109.7 3.6 88 17-107 778-885 (1394)
325 COG4604 CeuD ABC-type enteroch 98.4 1.6E-07 3.5E-12 92.5 3.2 130 26-198 25-174 (252)
326 PRK10938 putative molybdenum t 98.4 3.7E-07 8.1E-12 94.1 5.1 46 17-64 18-63 (490)
327 cd03283 ABC_MutS-like MutS-lik 98.4 1.7E-07 3.7E-12 87.7 2.1 89 11-108 7-102 (199)
328 PRK15439 autoinducer 2 ABC tra 98.3 5.5E-07 1.2E-11 94.0 5.8 61 26-89 287-363 (510)
329 PRK13546 teichoic acids export 98.3 7.2E-07 1.6E-11 86.6 5.2 60 26-90 48-108 (264)
330 COG4152 ABC-type uncharacteriz 98.3 4E-07 8.6E-12 91.8 3.5 88 19-109 19-120 (300)
331 TIGR00957 MRP_assoc_pro multi 98.3 5.3E-07 1.1E-11 106.0 5.0 71 17-92 653-723 (1522)
332 PRK10982 galactose/methyl gala 98.3 6.6E-07 1.4E-11 92.5 5.0 67 17-87 263-346 (491)
333 PRK10636 putative ABC transpor 98.3 4.6E-07 1E-11 97.9 4.0 63 17-82 327-391 (638)
334 PRK09580 sufC cysteine desulfu 98.3 3.6E-07 7.8E-12 85.4 2.7 46 17-64 16-63 (248)
335 COG0488 Uup ATPase components 98.3 2.2E-06 4.8E-11 92.2 8.7 165 25-204 26-198 (530)
336 PTZ00243 ABC transporter; Prov 98.3 6.2E-07 1.3E-11 105.9 4.7 71 17-92 675-745 (1560)
337 TIGR01271 CFTR_protein cystic 98.3 7E-07 1.5E-11 104.9 5.1 71 17-92 441-511 (1490)
338 TIGR00956 3a01205 Pleiotropic 98.3 4.1E-07 8.9E-12 106.3 3.1 71 17-90 76-161 (1394)
339 COG4778 PhnL ABC-type phosphon 98.3 3.3E-07 7.1E-12 89.1 1.7 43 20-64 29-71 (235)
340 TIGR01257 rim_protein retinal- 98.2 5.5E-07 1.2E-11 109.4 3.8 79 26-107 1963-2058(2272)
341 PLN03140 ABC transporter G fam 98.2 5E-07 1.1E-11 106.3 3.0 89 17-108 895-1003(1470)
342 PRK10938 putative molybdenum t 98.2 5.4E-07 1.2E-11 93.0 2.2 45 18-64 276-321 (490)
343 PLN03140 ABC transporter G fam 98.2 5.4E-07 1.2E-11 106.1 2.2 73 15-90 178-262 (1470)
344 COG5265 ATM1 ABC-type transpor 98.2 1.3E-06 2.8E-11 93.0 4.8 73 17-92 278-361 (497)
345 cd03222 ABC_RNaseL_inhibitor T 98.2 1.4E-06 3E-11 81.0 4.3 49 26-78 23-71 (177)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 1.7E-06 3.7E-11 76.5 4.1 56 17-75 15-70 (144)
347 cd03216 ABC_Carb_Monos_I This 98.2 1.1E-06 2.5E-11 78.8 2.8 46 17-64 15-60 (163)
348 TIGR02323 CP_lyasePhnK phospho 98.1 1.6E-06 3.4E-11 81.8 3.6 46 17-64 18-63 (253)
349 PRK13409 putative ATPase RIL; 98.1 2.1E-06 4.6E-11 92.6 4.3 43 17-62 89-131 (590)
350 cd03214 ABC_Iron-Siderophores_ 98.1 1.7E-06 3.8E-11 78.2 3.1 46 17-64 14-59 (180)
351 COG4674 Uncharacterized ABC-ty 98.1 8.8E-07 1.9E-11 87.3 1.3 86 19-106 22-134 (249)
352 cd00820 PEPCK_HprK Phosphoenol 98.1 2.6E-06 5.6E-11 75.0 3.6 56 26-92 13-79 (107)
353 COG4559 ABC-type hemin transpo 98.0 6.3E-06 1.4E-10 82.1 5.0 73 17-92 16-100 (259)
354 PRK13545 tagH teichoic acids e 98.0 4E-06 8.7E-11 90.9 3.8 68 18-90 40-108 (549)
355 PRK10636 putative ABC transpor 97.9 4.2E-06 9.1E-11 90.6 2.8 69 17-88 16-84 (638)
356 TIGR03238 dnd_assoc_3 dnd syst 97.9 8E-06 1.7E-10 87.9 4.7 47 14-64 18-65 (504)
357 COG1134 TagH ABC-type polysacc 97.9 1E-05 2.3E-10 80.6 4.3 116 26-185 51-179 (249)
358 cd00267 ABC_ATPase ABC (ATP-bi 97.8 2.1E-05 4.5E-10 69.3 4.3 46 17-64 14-59 (157)
359 PLN03073 ABC transporter F fam 97.8 1E-05 2.2E-10 89.5 2.6 50 25-77 532-581 (718)
360 PRK11147 ABC transporter ATPas 97.8 1.3E-05 2.8E-10 86.4 3.0 46 17-64 18-63 (635)
361 KOG0054 Multidrug resistance-a 97.7 3.1E-05 6.7E-10 91.3 5.0 79 11-92 1149-1238(1381)
362 cd03273 ABC_SMC2_euk Eukaryoti 97.7 2.2E-05 4.8E-10 74.7 3.0 25 27-53 24-48 (251)
363 COG0488 Uup ATPase components 97.6 2.5E-05 5.3E-10 84.3 2.7 146 17-204 337-484 (530)
364 COG4133 CcmA ABC-type transpor 97.6 4.7E-05 1E-09 74.4 4.4 37 26-64 26-62 (209)
365 COG0396 sufC Cysteine desulfur 97.6 5.6E-05 1.2E-09 75.5 4.9 57 16-74 18-75 (251)
366 cd03238 ABC_UvrA The excision 97.6 3.6E-05 7.8E-10 71.6 3.0 31 18-50 11-41 (176)
367 PRK10078 ribose 1,5-bisphospho 97.6 4.5E-05 9.7E-10 69.6 3.5 27 27-55 1-27 (186)
368 COG1101 PhnK ABC-type uncharac 97.6 5.4E-05 1.2E-09 75.7 4.2 76 12-90 16-105 (263)
369 KOG0059 Lipid exporter ABCA1 a 97.6 5.8E-05 1.3E-09 85.1 4.9 128 26-162 589-739 (885)
370 PRK09270 nucleoside triphospha 97.6 6.6E-05 1.4E-09 70.9 4.3 46 12-60 18-63 (229)
371 TIGR00235 udk uridine kinase. 97.6 6.2E-05 1.3E-09 69.8 3.9 30 24-54 2-31 (207)
372 TIGR02858 spore_III_AA stage I 97.5 7.5E-05 1.6E-09 74.2 4.3 87 29-124 112-210 (270)
373 PF00625 Guanylate_kin: Guanyl 97.5 7.6E-05 1.6E-09 67.8 3.8 28 27-55 1-28 (183)
374 PRK14737 gmk guanylate kinase; 97.5 7.9E-05 1.7E-09 69.6 3.7 28 26-54 2-29 (186)
375 KOG0054 Multidrug resistance-a 97.5 9.6E-05 2.1E-09 87.3 5.1 71 17-92 536-606 (1381)
376 COG4172 ABC-type uncharacteriz 97.5 0.00011 2.4E-09 78.7 5.0 98 5-106 284-412 (534)
377 PRK09825 idnK D-gluconate kina 97.5 6.4E-05 1.4E-09 69.4 2.8 28 27-56 2-29 (176)
378 TIGR03263 guanyl_kin guanylate 97.5 8.8E-05 1.9E-09 66.0 3.4 26 28-54 1-26 (180)
379 COG4167 SapF ABC-type antimicr 97.4 0.00021 4.5E-09 70.8 5.8 56 27-85 38-106 (267)
380 smart00382 AAA ATPases associa 97.4 0.00019 4.1E-09 56.9 4.5 36 28-64 2-37 (148)
381 cd03284 ABC_MutS1 MutS1 homolo 97.4 6.1E-05 1.3E-09 71.5 1.9 89 9-105 5-105 (216)
382 COG0194 Gmk Guanylate kinase [ 97.4 9.7E-05 2.1E-09 71.5 3.2 26 27-53 3-28 (191)
383 PRK14738 gmk guanylate kinase; 97.4 0.00011 2.3E-09 68.9 3.3 27 25-52 10-36 (206)
384 cd01130 VirB11-like_ATPase Typ 97.4 0.00017 3.7E-09 66.2 4.5 36 26-63 23-58 (186)
385 PF13173 AAA_14: AAA domain 97.4 0.00015 3.3E-09 62.5 3.9 37 28-66 2-38 (128)
386 COG4608 AppF ABC-type oligopep 97.4 0.00015 3.2E-09 73.1 4.3 37 26-64 37-73 (268)
387 COG0444 DppD ABC-type dipeptid 97.4 0.00014 3E-09 74.9 4.1 40 26-66 29-70 (316)
388 PRK00300 gmk guanylate kinase; 97.4 0.00015 3.2E-09 66.1 3.7 27 26-53 3-29 (205)
389 cd03278 ABC_SMC_barmotin Barmo 97.4 6.9E-05 1.5E-09 70.0 1.6 25 27-54 22-46 (197)
390 COG1119 ModF ABC-type molybden 97.4 0.00016 3.5E-09 72.6 4.2 36 27-64 56-91 (257)
391 TIGR02322 phosphon_PhnN phosph 97.4 0.00019 4E-09 64.3 4.1 25 28-53 1-25 (179)
392 cd03272 ABC_SMC3_euk Eukaryoti 97.4 0.00015 3.2E-09 67.9 3.6 23 27-51 22-44 (243)
393 COG1123 ATPase components of v 97.4 0.00018 4E-09 78.3 4.7 37 19-56 26-62 (539)
394 smart00072 GuKc Guanylate kina 97.3 0.00017 3.7E-09 65.9 3.6 27 27-54 1-27 (184)
395 COG4615 PvdE ABC-type sideroph 97.3 0.00014 3E-09 77.9 3.0 88 26-122 347-449 (546)
396 PRK05541 adenylylsulfate kinas 97.3 0.00029 6.3E-09 63.2 4.4 38 26-64 5-42 (176)
397 PF13207 AAA_17: AAA domain; P 97.3 0.00018 3.9E-09 59.8 2.7 23 30-53 1-23 (121)
398 cd00009 AAA The AAA+ (ATPases 97.3 0.00048 1E-08 55.6 5.0 28 27-55 18-45 (151)
399 PF03193 DUF258: Protein of un 97.2 0.00025 5.3E-09 66.5 3.5 25 28-53 35-59 (161)
400 PRK05480 uridine/cytidine kina 97.2 0.00044 9.6E-09 63.8 4.7 27 26-53 4-30 (209)
401 KOG0065 Pleiotropic drug resis 97.2 0.00034 7.4E-09 82.4 4.6 88 17-107 806-913 (1391)
402 cd00071 GMPK Guanosine monopho 97.1 0.00031 6.7E-09 62.2 3.1 24 30-54 1-24 (137)
403 PF13191 AAA_16: AAA ATPase do 97.1 0.00044 9.6E-09 60.5 3.9 44 12-56 7-51 (185)
404 cd03240 ABC_Rad50 The catalyti 97.1 0.00021 4.6E-09 66.9 1.9 21 28-50 22-42 (204)
405 COG4178 ABC-type uncharacteriz 97.1 0.00065 1.4E-08 74.9 5.8 69 19-92 410-480 (604)
406 cd02023 UMPK Uridine monophosp 97.1 0.00063 1.4E-08 62.1 4.5 23 30-53 1-23 (198)
407 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.00021 4.6E-09 66.1 1.4 40 10-51 6-49 (200)
408 cd03270 ABC_UvrA_I The excisio 97.1 0.0003 6.6E-09 66.6 2.2 21 25-45 18-38 (226)
409 TIGR00554 panK_bact pantothena 97.0 0.00066 1.4E-08 68.4 4.6 26 26-53 60-85 (290)
410 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.00046 1E-08 64.0 3.2 75 13-90 7-90 (235)
411 TIGR02788 VirB11 P-type DNA tr 97.0 0.0012 2.5E-08 65.9 6.1 37 26-64 142-178 (308)
412 cd01131 PilT Pilus retraction 97.0 0.00069 1.5E-08 63.2 4.1 30 30-60 3-32 (198)
413 PRK08233 hypothetical protein; 97.0 0.00086 1.9E-08 59.2 4.4 27 28-55 3-29 (182)
414 PF13671 AAA_33: AAA domain; P 97.0 0.00057 1.2E-08 58.1 3.1 23 30-53 1-23 (143)
415 PTZ00035 Rad51 protein; Provis 97.0 0.00048 1E-08 70.2 2.9 91 27-119 117-221 (337)
416 cd03243 ABC_MutS_homologs The 97.0 0.00035 7.6E-09 64.6 1.7 23 27-51 28-50 (202)
417 cd01393 recA_like RecA is a b 96.9 0.00057 1.2E-08 63.0 3.0 80 26-105 17-108 (226)
418 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.00023 5E-09 67.5 0.4 42 10-53 6-52 (204)
419 PF08477 Miro: Miro-like prote 96.9 0.00066 1.4E-08 55.9 3.0 24 31-55 2-25 (119)
420 PLN03073 ABC transporter F fam 96.9 0.00088 1.9E-08 74.5 4.9 43 18-62 193-238 (718)
421 PRK07667 uridine kinase; Provi 96.9 0.0013 2.8E-08 61.0 5.1 29 26-55 15-43 (193)
422 cd00227 CPT Chloramphenicol (C 96.9 0.00085 1.8E-08 60.6 3.7 27 27-54 1-27 (175)
423 PF00485 PRK: Phosphoribulokin 96.9 0.00066 1.4E-08 62.4 2.9 26 30-56 1-26 (194)
424 PRK06696 uridine kinase; Valid 96.9 0.0012 2.6E-08 62.2 4.7 30 25-55 19-48 (223)
425 PRK06762 hypothetical protein; 96.9 0.00088 1.9E-08 59.3 3.4 26 27-53 1-26 (166)
426 PRK03846 adenylylsulfate kinas 96.9 0.0011 2.5E-08 61.2 4.2 39 25-64 21-59 (198)
427 cd04159 Arl10_like Arl10-like 96.9 0.0007 1.5E-08 56.1 2.5 21 31-52 2-22 (159)
428 COG4586 ABC-type uncharacteriz 96.9 0.0013 2.8E-08 67.8 4.9 36 27-64 49-84 (325)
429 PRK10751 molybdopterin-guanine 96.8 0.0012 2.6E-08 62.4 4.2 37 27-64 5-41 (173)
430 PF13555 AAA_29: P-loop contai 96.8 0.00087 1.9E-08 54.4 2.7 23 27-50 22-44 (62)
431 cd04155 Arl3 Arl3 subfamily. 96.8 0.0012 2.6E-08 57.3 3.8 24 28-52 14-37 (173)
432 TIGR03015 pepcterm_ATPase puta 96.8 0.0013 2.8E-08 61.9 4.1 43 11-54 25-68 (269)
433 COG1162 Predicted GTPases [Gen 96.8 0.0012 2.5E-08 67.8 4.0 38 27-65 163-211 (301)
434 PRK09435 membrane ATPase/prote 96.8 0.0018 3.8E-08 66.6 5.2 55 11-66 39-93 (332)
435 COG4107 PhnK ABC-type phosphon 96.8 0.0016 3.5E-08 64.3 4.5 37 26-64 30-66 (258)
436 cd01120 RecA-like_NTPases RecA 96.7 0.0015 3.2E-08 54.9 3.6 35 30-65 1-35 (165)
437 TIGR01360 aden_kin_iso1 adenyl 96.7 0.00089 1.9E-08 59.4 2.5 24 28-52 3-26 (188)
438 PLN02796 D-glycerate 3-kinase 96.7 0.002 4.4E-08 67.0 5.4 25 29-54 101-125 (347)
439 PLN02772 guanylate kinase 96.7 0.0012 2.6E-08 69.8 3.7 28 26-54 133-160 (398)
440 cd01876 YihA_EngB The YihA (En 96.7 0.001 2.2E-08 55.6 2.5 19 31-50 2-20 (170)
441 cd02019 NK Nucleoside/nucleoti 96.7 0.0021 4.5E-08 51.0 4.2 23 30-53 1-23 (69)
442 PF13401 AAA_22: AAA domain; P 96.7 0.00097 2.1E-08 55.7 2.4 27 27-54 3-29 (131)
443 cd02025 PanK Pantothenate kina 96.7 0.0014 3.1E-08 62.6 3.8 24 30-54 1-24 (220)
444 PF13238 AAA_18: AAA domain; P 96.7 0.0011 2.4E-08 54.5 2.5 22 31-53 1-22 (129)
445 PF12775 AAA_7: P-loop contain 96.7 0.0018 4E-08 64.1 4.2 45 12-57 15-61 (272)
446 cd03279 ABC_sbcCD SbcCD and ot 96.7 0.0013 2.8E-08 61.5 2.9 22 28-51 28-49 (213)
447 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.00076 1.6E-08 64.1 1.4 41 9-51 5-50 (213)
448 PF01637 Arch_ATPase: Archaeal 96.6 0.00091 2E-08 59.7 1.6 28 27-55 19-46 (234)
449 PRK06547 hypothetical protein; 96.6 0.0027 5.9E-08 58.9 4.7 37 13-52 2-38 (172)
450 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0034 7.3E-08 57.6 5.3 40 25-65 35-74 (226)
451 PF00004 AAA: ATPase family as 96.6 0.0023 5E-08 52.9 3.7 22 31-53 1-22 (132)
452 PTZ00301 uridine kinase; Provi 96.6 0.0015 3.2E-08 62.7 2.7 24 29-53 4-27 (210)
453 TIGR01313 therm_gnt_kin carboh 96.5 0.0013 2.9E-08 58.0 2.2 21 31-52 1-21 (163)
454 PLN02318 phosphoribulokinase/u 96.5 0.002 4.3E-08 71.7 4.0 57 28-88 65-126 (656)
455 PRK00698 tmk thymidylate kinas 96.5 0.0022 4.7E-08 57.9 3.6 27 27-54 2-28 (205)
456 PF10662 PduV-EutP: Ethanolami 96.5 0.0062 1.3E-07 56.5 6.5 34 29-64 2-35 (143)
457 PTZ00132 GTP-binding nuclear p 96.5 0.0035 7.6E-08 57.7 4.8 24 30-54 11-34 (215)
458 PRK08903 DnaA regulatory inact 96.5 0.004 8.8E-08 58.1 5.2 41 25-66 39-79 (227)
459 PF05729 NACHT: NACHT domain 96.5 0.0019 4.1E-08 55.0 2.8 28 29-57 1-28 (166)
460 cd03271 ABC_UvrA_II The excisi 96.5 0.0017 3.8E-08 64.3 2.8 23 26-49 19-41 (261)
461 PRK08118 topology modulation p 96.5 0.0022 4.8E-08 58.7 3.2 23 30-53 3-25 (167)
462 PRK06893 DNA replication initi 96.5 0.0038 8.2E-08 59.5 4.9 40 26-66 37-76 (229)
463 PRK00889 adenylylsulfate kinas 96.5 0.0027 5.8E-08 57.0 3.7 27 27-54 3-29 (175)
464 cd02026 PRK Phosphoribulokinas 96.5 0.0026 5.7E-08 63.0 3.9 26 30-57 1-26 (273)
465 cd00876 Ras Ras family. The R 96.4 0.0022 4.8E-08 54.0 2.8 21 31-52 2-22 (160)
466 cd03274 ABC_SMC4_euk Eukaryoti 96.4 0.002 4.3E-08 61.1 2.8 55 29-90 26-82 (212)
467 cd04138 H_N_K_Ras_like H-Ras/N 96.4 0.0023 5E-08 53.9 2.8 22 31-53 4-25 (162)
468 PRK07261 topology modulation p 96.4 0.0025 5.4E-08 58.4 3.2 23 30-53 2-24 (171)
469 TIGR01420 pilT_fam pilus retra 96.4 0.0036 7.8E-08 63.4 4.6 32 27-59 121-152 (343)
470 cd04114 Rab30 Rab30 subfamily. 96.4 0.0031 6.8E-08 54.4 3.5 24 29-53 8-31 (169)
471 PRK11545 gntK gluconate kinase 96.4 0.0012 2.6E-08 60.0 1.0 19 34-53 1-19 (163)
472 cd00879 Sar1 Sar1 subfamily. 96.4 0.0035 7.6E-08 55.7 3.9 34 17-52 9-42 (190)
473 TIGR00455 apsK adenylylsulfate 96.4 0.0028 6E-08 57.5 3.3 28 26-54 16-43 (184)
474 cd03275 ABC_SMC1_euk Eukaryoti 96.4 0.0029 6.2E-08 60.6 3.4 29 27-57 21-49 (247)
475 PF13476 AAA_23: AAA domain; P 96.4 0.0023 4.9E-08 56.3 2.5 19 27-45 18-36 (202)
476 TIGR00750 lao LAO/AO transport 96.4 0.0047 1E-07 61.3 5.1 51 15-66 21-71 (300)
477 cd04119 RJL RJL (RabJ-Like) su 96.4 0.0026 5.7E-08 53.9 2.8 22 31-53 3-24 (168)
478 PF06414 Zeta_toxin: Zeta toxi 96.3 0.0036 7.8E-08 58.0 3.8 81 26-115 13-93 (199)
479 PRK01889 GTPase RsgA; Reviewed 96.3 0.0059 1.3E-07 62.6 5.7 62 27-91 194-263 (356)
480 cd01862 Rab7 Rab7 subfamily. 96.3 0.0027 5.8E-08 54.6 2.8 22 31-53 3-24 (172)
481 KOG0060 Long-chain acyl-CoA tr 96.3 0.0065 1.4E-07 67.5 6.1 65 25-92 458-525 (659)
482 PF03215 Rad17: Rad17 cell cyc 96.3 0.0039 8.4E-08 67.5 4.4 39 14-53 28-69 (519)
483 TIGR02239 recomb_RAD51 DNA rep 96.3 0.0018 3.9E-08 65.5 1.8 66 27-92 95-169 (316)
484 cd02028 UMPK_like Uridine mono 96.3 0.0033 7.1E-08 58.1 3.3 25 30-55 1-25 (179)
485 cd01860 Rab5_related Rab5-rela 96.3 0.0031 6.7E-08 53.9 2.8 22 31-53 4-25 (163)
486 cd04164 trmE TrmE (MnmE, ThdF, 96.3 0.0035 7.6E-08 52.4 3.0 24 28-52 1-24 (157)
487 TIGR00231 small_GTP small GTP- 96.3 0.0033 7.1E-08 51.1 2.8 23 30-53 3-25 (161)
488 PRK08084 DNA replication initi 96.3 0.0046 1E-07 59.3 4.2 39 27-66 44-82 (235)
489 smart00173 RAS Ras subfamily o 96.2 0.0033 7.2E-08 54.0 2.8 22 30-52 2-23 (164)
490 cd01858 NGP_1 NGP-1. Autoanti 96.2 0.0052 1.1E-07 54.4 4.1 22 29-51 103-124 (157)
491 smart00175 RAB Rab subfamily o 96.2 0.0033 7.2E-08 53.5 2.8 22 31-53 3-24 (164)
492 smart00053 DYNc Dynamin, GTPas 96.2 0.014 3.1E-07 57.5 7.6 42 11-54 5-50 (240)
493 KOG0927 Predicted transporter 96.2 0.015 3.2E-07 64.4 8.2 147 16-202 404-552 (614)
494 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0064 1.4E-07 55.4 4.6 34 20-54 14-47 (133)
495 COG2909 MalT ATP-dependent tra 96.2 0.023 5E-07 65.3 9.9 182 9-219 22-227 (894)
496 cd04101 RabL4 RabL4 (Rab-like4 96.2 0.0067 1.4E-07 52.1 4.4 20 31-51 3-22 (164)
497 PRK00098 GTPase RsgA; Reviewed 96.2 0.0045 9.8E-08 61.6 3.9 25 27-52 163-187 (298)
498 cd04160 Arfrp1 Arfrp1 subfamil 96.2 0.0037 8E-08 53.8 2.9 22 31-53 2-23 (167)
499 cd01672 TMPK Thymidine monopho 96.2 0.0035 7.6E-08 55.3 2.8 24 30-54 2-25 (200)
500 PRK00131 aroK shikimate kinase 96.2 0.0041 8.9E-08 54.1 3.1 26 27-53 3-28 (175)
No 1
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=2e-40 Score=361.32 Aligned_cols=117 Identities=24% Similarity=0.271 Sum_probs=111.8
Q ss_pred hHHHHHhhhh--------hhh-hcCCccee---cccccchhhHHHHHhhhhhccc----ccccCcchhccchhhhhHHH-
Q 043574 215 QHEWRANAIA--------NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEI----DRFQPKLVINNIEVLRNAIQ- 277 (530)
Q Consensus 215 ~~GW~~lgg~--------aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL----~~~~~~fy~siPe~l~wp~f- 277 (530)
++||.+|||+ ||| |+|||+++ +||+++|||||+|+|+|||||| +.+++.||.++|+.++||+|
T Consensus 344 ~~gw~~LGgVvLciTGaEALfADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~~v 423 (852)
T PLN00151 344 TKAWSALGGCVLCATGSEAMFADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPVFL 423 (852)
T ss_pred CceEEEecceeeeeccchhhhcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHH
Confidence 4799999999 999 99999999 9999999999999999999999 56778899999999999999
Q ss_pred -HHHHHHHhhhhhhhccchhHHhhhhhhccchhh------hhhccceeeeechhHHHHHHhhC
Q 043574 278 -RMIQLYYSYRAYLDFGFIDIFISRETFGWTPQE------AKMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 278 -AtlAAiVaSQA~IsatFSiIkQsr~aLGCFPRV------kk~hggQIYIPEiNW~LmilcLa 333 (530)
||+||||||||+||+|||+|+|| .+||||||+ ++.+| |||||||||+||++|++
T Consensus 424 lAtlAaIIASQA~ISgtFSii~Qa-i~Lg~fPRvkIvHTS~~~~G-QIYIP~vNw~Lmv~~i~ 484 (852)
T PLN00151 424 IANLAALIASRAMTTATFSCIKQS-MALGCFPRLKIIHTSRKFMG-QIYIPVINWFLLVMCLV 484 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCceEEeCCCccCC-ceeeHHHHHHHHHHHHh
Confidence 99999999999999999999999 999999999 36677 99999999999999986
No 2
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=1.6e-39 Score=353.23 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=110.4
Q ss_pred hHHHHHhhhh--------hhh-hcCCccee---cccccchhhHHHHHhhhhhccccc-------ccCcchhccchhhhhH
Q 043574 215 QHEWRANAIA--------NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEIDR-------FQPKLVINNIEVLRNA 275 (530)
Q Consensus 215 ~~GW~~lgg~--------aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL~~-------~~~~fy~siPe~l~wp 275 (530)
++||.+|||+ ||| |+|||+++ +||+++|||||+|+|+||||||.+ +++.||.++|+.++||
T Consensus 268 ~~g~~~LGgV~L~iTG~EALyADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~~~~P 347 (779)
T PLN00149 268 RGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEKLRWP 347 (779)
T ss_pred CceeEeecchhhcccchhhhhhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCchhHHH
Confidence 5899999999 999 99999999 999999999999999999999943 3347999999999999
Q ss_pred HH--HHHHHHHhhhhhhhccchhHHhhhhhhccchhhh------hhccceeeeechhHHHHHHhhC
Q 043574 276 IQ--RMIQLYYSYRAYLDFGFIDIFISRETFGWTPQEA------KMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 276 ~f--AtlAAiVaSQA~IsatFSiIkQsr~aLGCFPRVk------k~hggQIYIPEiNW~LmilcLa 333 (530)
++ ||+||||||||+||++||+++|| .+||||||+| +.+| ||||||+||+||++|++
T Consensus 348 ~~vlAtlAaIIASQA~ISg~FSii~Qa-~~Lg~fPrvkIvhTS~~~~G-QIYIP~vNw~Lmv~~i~ 411 (779)
T PLN00149 348 VLVIAILAAVVGSQAIITGTFSIIKQC-SALGCFPKVKIVHTSSKIHG-QIYIPEINWTLMLLCLA 411 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCceEEecCcccCC-ceeeHHHHHHHHHHHHh
Confidence 99 99999999999999999999999 9999999993 7777 99999999999999986
No 3
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=3.2e-39 Score=350.84 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=111.4
Q ss_pred hHHHHHhhhh--------hhh-hcCCccee---cccccchhhHHHHHhhhhhccc----ccccCcchhccchhhhhHHH-
Q 043574 215 QHEWRANAIA--------NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEI----DRFQPKLVINNIEVLRNAIQ- 277 (530)
Q Consensus 215 ~~GW~~lgg~--------aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL----~~~~~~fy~siPe~l~wp~f- 277 (530)
++||.+|||+ ||| |+|||+++ +||+++|||||+|+|+|||||| +.+.+.||.++|+.++||++
T Consensus 267 ~~g~~~LGgV~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~v 346 (785)
T PLN00148 267 KDGWISLGGILLSITGTEAMFADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPSIPNSFYDSIPDPVFWPVFV 346 (785)
T ss_pred CceEEeecchheeccchhhhhhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHH
Confidence 4799999999 999 99999999 9999999999999999999999 56677899999999999999
Q ss_pred -HHHHHHHhhhhhhhccchhHHhhhhhhccchhh------hhhccceeeeechhHHHHHHhhC
Q 043574 278 -RMIQLYYSYRAYLDFGFIDIFISRETFGWTPQE------AKMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 278 -AtlAAiVaSQA~IsatFSiIkQsr~aLGCFPRV------kk~hggQIYIPEiNW~LmilcLa 333 (530)
||+|+||||||+||++||+++|| .+||||||+ ++.+| |||||++||+||++|++
T Consensus 347 lAtlAtIIASQA~ISg~FSi~~Qa-i~Lg~fPrvkIvhTS~~~~G-QIYIP~vNw~Lmv~~i~ 407 (785)
T PLN00148 347 IATLAAIVGSQAVITATFSIVKQC-HALGCFPRVKVVHTSKHIYG-QIYIPEINWILMILTLA 407 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCceEEecCCccCC-ceeeHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999 36677 99999999999999985
No 4
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=348.99 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=111.9
Q ss_pred hHHHHHhhhh--------hhh-hcCCccee---cccccchhhHHHHHhhhhhccc----ccccCcchhccchhhhhHHH-
Q 043574 215 QHEWRANAIA--------NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEI----DRFQPKLVINNIEVLRNAIQ- 277 (530)
Q Consensus 215 ~~GW~~lgg~--------aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL----~~~~~~fy~siPe~l~wp~f- 277 (530)
.+||.+|||+ ||| |+|||+++ +||+++|||||+|+|+|||||| +.+++.||.++|+.++||++
T Consensus 284 ~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~v 363 (779)
T PLN00150 284 RQGWESLGGIVLCMTGTEAMFADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFYRSLPKPIYWPIFV 363 (779)
T ss_pred CceEEEecceeeeecchhhhhccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHH
Confidence 4799999999 999 99999999 9999999999999999999999 56677899999999999999
Q ss_pred -HHHHHHHhhhhhhhccchhHHhhhhhhccchhh------hhhccceeeeechhHHHHHHhhC
Q 043574 278 -RMIQLYYSYRAYLDFGFIDIFISRETFGWTPQE------AKMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 278 -AtlAAiVaSQA~IsatFSiIkQsr~aLGCFPRV------kk~hggQIYIPEiNW~LmilcLa 333 (530)
||+|+||||||+||++||+++|| .+||||||+ ++.+| |||||+|||+||++|++
T Consensus 364 lAtlAtIIASQA~ISg~FSi~~Qa-i~Lg~fPrvkI~hTS~~~~G-QIYIP~vNw~Lmv~~i~ 424 (779)
T PLN00150 364 LATCSAMIASQAMISATFSIVKQA-MALGCFPRVKIVHTSNKVHG-QVYIPEINWILMVLCLV 424 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCceEEecCcccCC-ceeeHHHHHHHHHHHHh
Confidence 99999999999999999999999 999999999 46777 99999999999999986
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=1.3e-34 Score=312.34 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=110.6
Q ss_pred hHHHHHhhhh--------hhh-hcCCccee---cccccchhhHHHHHhhhhhccc----ccccCcchhccchhhhhHHH-
Q 043574 215 QHEWRANAIA--------NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEI----DRFQPKLVINNIEVLRNAIQ- 277 (530)
Q Consensus 215 ~~GW~~lgg~--------aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL----~~~~~~fy~siPe~l~wp~f- 277 (530)
..||..+||+ ||| |+|||+++ +|+.++|||||+|.|+||+||| +.+.+.||...|+.++||++
T Consensus 238 ~~~~~~LG~V~L~iTGaEALyADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~~v 317 (688)
T TIGR00794 238 TVGWVSLGGVVLSITGVEAMFADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSIPDWALWPLFI 317 (688)
T ss_pred CceeeeccchhheeccHhhhhcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhCchHHHHHHHH
Confidence 4799999999 999 99999999 9999999999999999999999 45667899999999999999
Q ss_pred -HHHHHHHhhhhhhhccchhHHhhhhhhccchhhh------hhccceeeeechhHHHHHHhhC
Q 043574 278 -RMIQLYYSYRAYLDFGFIDIFISRETFGWTPQEA------KMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 278 -AtlAAiVaSQA~IsatFSiIkQsr~aLGCFPRVk------k~hggQIYIPEiNW~LmilcLa 333 (530)
||+|+||||||+||++||+++|| ..||||||++ +.+| |||||++||+||+.|++
T Consensus 318 lAtlAtIIASQA~IsG~FSl~~Qa-i~Lg~~Pr~~I~hTS~~~~G-QIYiP~vNw~Lmv~~i~ 378 (688)
T TIGR00794 318 IATLAAIIASQAVISGVFSITSQA-VRLGCFPRVKIIHTSEKYHG-QIYIPFVNWLLMLGVIA 378 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCceEEecCCccCC-ceeeHHHHHHHHHHHHh
Confidence 99999999999999999999999 9999999993 5566 99999999999999986
No 6
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=99.97 E-value=5.4e-33 Score=293.41 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=109.9
Q ss_pred hHHHHHhhhh--------hhh-hcCCccee---cccccchhhHHHHHhhhhhccc----ccccCcchhccchhhhhHHH-
Q 043574 215 QHEWRANAIA--------NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEI----DRFQPKLVINNIEVLRNAIQ- 277 (530)
Q Consensus 215 ~~GW~~lgg~--------aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL----~~~~~~fy~siPe~l~wp~f- 277 (530)
..||..+|++ ||| |+|||+++ +|+.++|||||+|.|+||+||| +...+.||...|+.++||++
T Consensus 201 ~~~~~~LG~V~L~~TGaEALyADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~i 280 (534)
T PF02705_consen 201 WIGFFVLGAVFLCVTGAEALYADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIPEWLLWPMVI 280 (534)
T ss_pred CchhhhcchHHHHHhhHHHHHhhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhHHHHHHHHHH
Confidence 4699999998 999 99999999 9999999999999999999999 45667799999999999999
Q ss_pred -HHHHHHHhhhhhhhccchhHHhhhhhhccchhhh------hhccceeeeechhHHHHHHhhC
Q 043574 278 -RMIQLYYSYRAYLDFGFIDIFISRETFGWTPQEA------KMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 278 -AtlAAiVaSQA~IsatFSiIkQsr~aLGCFPRVk------k~hggQIYIPEiNW~LmilcLa 333 (530)
||+|+||||||+||++||+++|| ..||||||++ +.+| |||||++||+||+.|++
T Consensus 281 lAtlAtIIASQA~Isg~FSl~~Qa-i~Lg~~Pr~~I~hTS~~~~G-QIYIP~vNw~L~i~~i~ 341 (534)
T PF02705_consen 281 LATLATIIASQAVISGAFSLTRQA-IQLGYFPRLKIVHTSEKEEG-QIYIPEVNWLLMIGVIA 341 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCceEEEECCcccCC-cEechHHHHHHHHHHHh
Confidence 99999999999999999999999 9999999993 5556 99999999999999985
No 7
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=99.97 E-value=1.6e-32 Score=293.49 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=109.9
Q ss_pred hHHHHHhhhh--------hhh-hcCCccee---cccccchhhHHHHHhhhhhccc----ccccCcchhccchhhhhHHH-
Q 043574 215 QHEWRANAIA--------NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEI----DRFQPKLVINNIEVLRNAIQ- 277 (530)
Q Consensus 215 ~~GW~~lgg~--------aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL----~~~~~~fy~siPe~l~wp~f- 277 (530)
..||..+|++ ||| |+|||.++ +|+.++|||||+|.|+||+||| +...+.||...|+.++||++
T Consensus 212 ~~gf~~LG~V~L~vTGaEALYADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~vi 291 (622)
T PRK10745 212 TVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLI 291 (622)
T ss_pred CceEEEecceeeeccchHHHhhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchhhcCcHHHhCChhHHHHHHH
Confidence 4789999999 999 99999999 9999999999999999999999 45567799999999999999
Q ss_pred -HHHHHHHhhhhhhhccchhHHhhhhhhccchhhh------hhccceeeeechhHHHHHHhhC
Q 043574 278 -RMIQLYYSYRAYLDFGFIDIFISRETFGWTPQEA------KMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 278 -AtlAAiVaSQA~IsatFSiIkQsr~aLGCFPRVk------k~hggQIYIPEiNW~LmilcLa 333 (530)
||+|+||||||+||++||+++|| ..||||||++ +.+| |||||++||+||+.|++
T Consensus 292 LATlAtIIASQAvISGaFSl~~QA-i~Lg~~Prl~I~hTS~~~~G-QIYIP~vNw~Lmv~~i~ 352 (622)
T PRK10745 292 LATLATVIASQAVISGVFSLTRQA-VRLGYLPPMRIIHTSEMESG-QIYIPFVNWLLYVAVVI 352 (622)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-HHhCCCCCceEEeCCCccCC-ceeeHHHHHHHHHHHHe
Confidence 99999999999999999999999 9999999993 5556 99999999999999986
No 8
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.1e-21 Score=206.57 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=97.5
Q ss_pred hhh-hcCCccee---cccccchhhHHHHHhhhhhccc----ccccCcchhccchhhhhHHH--HHHHHHHhhhhhhhccc
Q 043574 225 NLN-RTGGFSRS---LANSCTDWPCLLIDLLSQAAEI----DRFQPKLVINNIEVLRNAIQ--RMIQLYYSYRAYLDFGF 294 (530)
Q Consensus 225 aMf-dLGhFS~~---lAFs~vvyPcLLLaYmGQAAyL----~~~~~~fy~siPe~l~wp~f--AtlAAiVaSQA~IsatF 294 (530)
|++ |+|||-++ .|.-++++|||+|-|+||.|++ +...+.||...|+-..+|+. ||+|++|||||+||+.|
T Consensus 235 ALYADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~P~~aliP~viLAT~ATVIASQAvISGaF 314 (627)
T COG3158 235 ALYADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIPLVILATAATVIASQAVISGAF 314 (627)
T ss_pred HHHhhccccCCccHHHHHHHHHHHHHHHHHccccceeccCcccccCcHHHhChhhHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 888 99999998 9999999999999999999999 55566688888888888887 99999999999999999
Q ss_pred hhHHhhhhhhccchhhh------hhccceeeeechhHHHHHHhhC
Q 043574 295 IDIFISRETFGWTPQEA------KMHMVTDYFSNSEWTVIAEVLG 333 (530)
Q Consensus 295 SiIkQsr~aLGCFPRVk------k~hggQIYIPEiNW~LmilcLa 333 (530)
|..+|+ ..||-.||.+ +..| |||||-+||+|++.++.
T Consensus 315 SLtrQA-i~Lg~lPrm~I~~TSe~~~G-QIYiP~VN~~L~~~V~~ 357 (627)
T COG3158 315 SLTRQA-IRLGYLPRMRIRHTSETESG-QIYIPAVNWLLLVAVVF 357 (627)
T ss_pred HHHHHH-HHhCCCCceEEEecCCcccc-eEEehHHHHHHHHHHhh
Confidence 999999 9999999993 5566 99999999999988763
No 9
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.3e-19 Score=176.38 Aligned_cols=87 Identities=24% Similarity=0.285 Sum_probs=72.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE------------EeccccCCCCCCCCCCccch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD------------FAESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id------------l~~~Ig~mvfQ~~nLFPHts 84 (530)
||.+....-..|++++|+||||||||||| ||+++++.+++|+++|+ +++.+| |+||+||||||++
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL--RclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG-mVFQ~fnLFPHlT 93 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL--RCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG-MVFQQFNLFPHLT 93 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH--HHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC-eecccccccccch
Confidence 34444444568999999999999999999 99999999999999987 224566 9999999999955
Q ss_pred h-ccCCCCC-------hhhHHHHHHHHHHH
Q 043574 85 W-SNCEPPT-------LSNCKAQLETCLES 106 (530)
Q Consensus 85 v-eNValp~-------~~d~r~r~e~aLE~ 106 (530)
+ |||+++- ++++++++.++|+.
T Consensus 94 vleNv~lap~~v~~~~k~eA~~~A~~lL~~ 123 (240)
T COG1126 94 VLENVTLAPVKVKKLSKAEAREKALELLEK 123 (240)
T ss_pred HHHHHHhhhHHHcCCCHHHHHHHHHHHHHH
Confidence 5 9999933 77888899888884
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.69 E-value=1.3e-17 Score=169.92 Aligned_cols=80 Identities=25% Similarity=0.288 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---------EeccccCCCCCCCCCCccchh-ccCCCCC--
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---------FAESIKDHHPQHNQSFPWSSW-SNCEPPT-- 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---------l~~~Ig~mvfQ~~nLFPHtsv-eNValp~-- 92 (530)
-..|++++|.||||||||||| |+++||+.|++|+++++ -.|+|+ |+||+|.||||+++ +||+||-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlL--R~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig-~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLL--RMIAGFEQPSSGEILLDGEDITDVPPEKRPIG-MVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEECCCCChhhcccc-eeecCcccCCCCcHHHHhhhhhhh
Confidence 458899999999999999999 99999999998888887 226667 99999999999666 9999965
Q ss_pred -----hhhHHHHHHHHHHHH
Q 043574 93 -----LSNCKAQLETCLESM 107 (530)
Q Consensus 93 -----~~d~r~r~e~aLE~~ 107 (530)
.++.+++++++|+.+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV 124 (352)
T COG3842 105 RKKLKKAEIKARVEEALELV 124 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHc
Confidence 355678898888764
No 11
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.4e-17 Score=167.20 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=73.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---------EeccccCCCCCCCCCCccchh-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---------FAESIKDHHPQHNQSFPWSSW-S 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---------l~~~Ig~mvfQ~~nLFPHtsv-e 86 (530)
++++....-.+|+.++|.||||||||||| |+++|++++++|+++|+ -+|+|+ |+||+|.||||+++ +
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlL--r~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ia-mVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLL--RMIAGLEEPTSGEILIDGRDVTDLPPEKRGIA-MVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEECCCCChhHCCEE-EEeCCccccCCCcHHH
Confidence 34444444578999999999999999999 99999999999988888 225666 99999999999555 9
Q ss_pred cCCCCC------hhhHHHHHHHHHHHHH
Q 043574 87 NCEPPT------LSNCKAQLETCLESMA 108 (530)
Q Consensus 87 NValp~------~~d~r~r~e~aLE~~a 108 (530)
|+++|- +++.++|++++++-|-
T Consensus 95 Niaf~Lk~~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 95 NIAFGLKLRGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred HhhhhhhhCCCchHHHHHHHHHHHHHcC
Confidence 999966 5777889988887663
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=6.8e-16 Score=151.58 Aligned_cols=126 Identities=24% Similarity=0.341 Sum_probs=88.9
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------ccccCCCCCCCCCCcc-chhccC
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------ESIKDHHPQHNQSFPW-SSWSNC 88 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------~~Ig~mvfQ~~nLFPH-tsveNV 88 (530)
++|.+....-..|++++|+||||||||||| |+++|+..+++|++.++=. .+++ ++||++.|||| |+.+||
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLL--riiAGL~~p~~G~V~~~g~~v~~p~~~~~-~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLL--RLIAGLEKPTSGEVLLDGRPVTGPGPDIG-YVFQEDALLPWLTVLDNV 93 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCcccCCCCCCEE-EEeccCcccchhhHHhhh
Confidence 455566666679999999999999999999 9999999999777666511 2334 78999999999 555999
Q ss_pred CCCC------hhhHHHHHHHHHHH-----------------HHHH-hHHhcccchhHH---------HHHhhhhccchHH
Q 043574 89 EPPT------LSNCKAQLETCLES-----------------MAER-GIKLGTISSQQI---------FTTLNKWHGLNTA 135 (530)
Q Consensus 89 alp~------~~d~r~r~e~aLE~-----------------~a~~-~v~~g~~~s~~i---------~~~l~~~h~l~ta 135 (530)
.++. .++.+++++++|+. |.++ |+-+.-+...+| +++++| +.+..-
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR-~~lq~~ 172 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR-EELQDE 172 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH-HHHHHH
Confidence 9955 45567788888874 4333 344444444444 244454 346666
Q ss_pred HHHHHhcccc
Q 043574 136 LRRILSKSNK 145 (530)
Q Consensus 136 l~r~~~~~~~ 145 (530)
|.++..+.+.
T Consensus 173 l~~lw~~~~~ 182 (248)
T COG1116 173 LLRLWEETRK 182 (248)
T ss_pred HHHHHHhhCC
Confidence 6666665443
No 13
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.56 E-value=3.9e-15 Score=143.62 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=67.5
Q ss_pred cCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---------EeccccCCCCCCCCCCccchh-ccCCCCC-
Q 043574 24 HHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---------FAESIKDHHPQHNQSFPWSSW-SNCEPPT- 92 (530)
Q Consensus 24 i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---------l~~~Ig~mvfQ~~nLFPHtsv-eNValp~- 92 (530)
.-..++.++|.||||+|||||+ +++++|+.|.+|++.|+ -++.+. |.||++|||+|+++ +||.++.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLL--nLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVS-mlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLL--NLIAGFETPASGEILINGVDHTASPPAERPVS-MLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred eecCCcEEEEECCCCccHHHHH--HHHHhccCCCCceEEEcCeecCcCCcccCChh-hhhhccccchhhhhhhhhcccCC
Confidence 3458899999999999999999 99999999998888887 224455 88999999999666 9999943
Q ss_pred ------hhhHHHHHHHHHHHHHH
Q 043574 93 ------LSNCKAQLETCLESMAE 109 (530)
Q Consensus 93 ------~~d~r~r~e~aLE~~a~ 109 (530)
.++ |++++.++..+-.
T Consensus 98 P~LkL~a~~-r~~v~~aa~~vGl 119 (231)
T COG3840 98 PGLKLNAEQ-REKVEAAAAQVGL 119 (231)
T ss_pred cccccCHHH-HHHHHHHHHHhCh
Confidence 555 8888888776543
No 14
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=7.5e-15 Score=149.04 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE----Ee--------ccccCCCCCCCCCCccchh-ccCCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD----FA--------ESIKDHHPQHNQSFPWSSW-SNCEPPT 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id----l~--------~~Ig~mvfQ~~nLFPHtsv-eNValp~ 92 (530)
.+|++++|.||||||||||| |+++|++.|+.|.+.++ ++ +.|| ++||||.||||+++ +||+|+.
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlL--RiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG-fvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLL--RIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG-FVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred cCCcEEEEECCCCCcHHHHH--HHHhCcCCCCCceEEECCEeccchhccchhhccee-EEEechhhcccchHHhhhhhcc
Confidence 58999999999999999999 99999999997777765 11 4566 88999999999666 9999944
Q ss_pred --------hhhHHHHHHHHHHHH
Q 043574 93 --------LSNCKAQLETCLESM 107 (530)
Q Consensus 93 --------~~d~r~r~e~aLE~~ 107 (530)
..+.++|++++|+-|
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lv 125 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLV 125 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHh
Confidence 456688999997643
No 15
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.46 E-value=2.5e-14 Score=143.06 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=70.1
Q ss_pred hccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh-ccCC
Q 043574 22 AQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW-SNCE 89 (530)
Q Consensus 22 ~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv-eNVa 89 (530)
...-..|++++++|||||||||++ +++|++-.|++|+++|+ ++++|| .+-|+..||||+++ |||+
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtL--kMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG-YviQqigLFPh~Tv~eNIa 97 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTL--KMINRLIEPTSGEILIDGEDISDLDPVELRRKIG-YVIQQIGLFPHLTVAENIA 97 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHH--HHHhcccCCCCceEEECCeecccCCHHHHHHhhh-hhhhhcccCCCccHHHHHH
Confidence 333458899999999999999999 99999999999998887 445666 66699999999555 9999
Q ss_pred C-CC-----hhhHHHHHHHHHHHHH
Q 043574 90 P-PT-----LSNCKAQLETCLESMA 108 (530)
Q Consensus 90 l-p~-----~~d~r~r~e~aLE~~a 108 (530)
+ |. ++++++|++++|+-+.
T Consensus 98 ~VP~L~~w~k~~i~~r~~ELl~lvg 122 (309)
T COG1125 98 TVPKLLGWDKERIKKRADELLDLVG 122 (309)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHhC
Confidence 9 54 7778889999988763
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=6e-14 Score=142.52 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=72.4
Q ss_pred hccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--------------EeccccCCCCCCCCCCcc-chhc
Q 043574 22 AQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--------------FAESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 22 ~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--------------l~~~Ig~mvfQ~~nLFPH-tsve 86 (530)
...-..|++++|+|.||+|||||+ ||+|+++.|++|++.|+ ++++|| |.||||||+-. |+.+
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLi--R~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IG-MIFQhFnLLssrTV~~ 102 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLL--RLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIG-MIFQHFNLLSSRTVFE 102 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHH--HHHhccCCCCCceEEEcCEecccCChHHHHHHHhhcc-EEeccccccccchHHh
Confidence 333458999999999999999999 99999999999999998 457888 99999999996 7779
Q ss_pred cCCCCC------hhhHHHHHHHHHHH
Q 043574 87 NCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 87 NValp~------~~d~r~r~e~aLE~ 106 (530)
||++|- ++++++|+.++||-
T Consensus 103 NvA~PLeiag~~k~ei~~RV~elLel 128 (339)
T COG1135 103 NVAFPLELAGVPKAEIKQRVAELLEL 128 (339)
T ss_pred hhhhhHhhcCCCHHHHHHHHHHHHHH
Confidence 999976 77789999999884
No 17
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.43 E-value=4.8e-14 Score=136.76 Aligned_cols=88 Identities=26% Similarity=0.278 Sum_probs=67.8
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--------------Ee-ccccCCCCCCCCCC
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--------------FA-ESIKDHHPQHNQSF 80 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--------------l~-~~Ig~mvfQ~~nLF 80 (530)
.+|+...-.-..|+.++|+||||||||||| +++.++..|++|.++|+ ++ +.|| ++||+|||.
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL--niig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl 95 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLL--NLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLL 95 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHH--HHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCC
Confidence 345555555578999999999999999999 99999999998888887 44 5667 889999999
Q ss_pred ccchh-ccCCCCC-----hh-hHHHHHHHHHHH
Q 043574 81 PWSSW-SNCEPPT-----LS-NCKAQLETCLES 106 (530)
Q Consensus 81 PHtsv-eNValp~-----~~-d~r~r~e~aLE~ 106 (530)
|.+++ |||.+|. .. +.+++++++++.
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~ 128 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEV 128 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHh
Confidence 99555 9999754 11 334455555544
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.5e-13 Score=131.50 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCC---ceEEEE---------------EeccccCCCCCCCCCCccchhcc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPH---LTGYVD---------------FAESIKDHHPQHNQSFPWSSWSN 87 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~---Gtg~Id---------------l~~~Ig~mvfQ~~nLFPHtsveN 87 (530)
...++++|+||||||||||| |++|+.++... -+|.|. +++.|| |+||.+|-||.+..||
T Consensus 31 ~~~~VTAlIGPSGcGKST~L--R~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vG-MVFQkPnPFp~SIydN 107 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLL--RCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVG-MVFQKPNPFPMSIYDN 107 (253)
T ss_pred cCCceEEEECCCCcCHHHHH--HHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHhe-eeccCCCCCCchHHHH
Confidence 46789999999999999999 99999876543 234444 335567 9999999999888899
Q ss_pred CCCCC
Q 043574 88 CEPPT 92 (530)
Q Consensus 88 Valp~ 92 (530)
|+++.
T Consensus 108 VayG~ 112 (253)
T COG1117 108 VAYGL 112 (253)
T ss_pred HHHhH
Confidence 99965
No 19
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=6e-13 Score=127.57 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=67.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------------EeccccCCCCCCCCCCccchh-cc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------------FAESIKDHHPQHNQSFPWSSW-SN 87 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------------l~~~Ig~mvfQ~~nLFPHtsv-eN 87 (530)
..|+.+||.||||+|||||+ |.++.++-|++|+..|. +++++| |+||+++|+||+++ ||
T Consensus 26 ~~getlvllgpsgagkssll--r~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg-mvfqqy~lwphltv~en 102 (242)
T COG4161 26 PEGETLVLLGPSGAGKSSLL--RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG-MVFQQYNLWPHLTVQEN 102 (242)
T ss_pred CCCCEEEEECCCCCchHHHH--HHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhh-hhhhhhccCchhHHHHH
Confidence 47899999999999999999 99999999999999886 446777 99999999999555 99
Q ss_pred CCC-CC------hhhHHHHHHHHHHHH
Q 043574 88 CEP-PT------LSNCKAQLETCLESM 107 (530)
Q Consensus 88 Val-p~------~~d~r~r~e~aLE~~ 107 (530)
+.. |. .+++++++.++|..|
T Consensus 103 lieap~kv~gl~~~qa~~~a~ellkrl 129 (242)
T COG4161 103 LIEAPCRVLGLSKDQALARAEKLLKRL 129 (242)
T ss_pred HHhhhHHHhCCCHHHHHHHHHHHHHHh
Confidence 987 32 677788888877654
No 20
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.33 E-value=9.7e-13 Score=134.77 Aligned_cols=78 Identities=24% Similarity=0.221 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--------------Ee-ccccCCCCCCCCCCcc-chhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--------------FA-ESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--------------l~-~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
..|+++||.|=||||||||+ |++|++..|.+|.+.|+ ++ +.+. |+||+|.|||| ++.+|++
T Consensus 52 ~~GeIfViMGLSGSGKSTLv--R~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~s-MVFQ~FaLlPhrtVl~Nv~ 128 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLV--RLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKIS-MVFQSFALLPHRTVLENVA 128 (386)
T ss_pred cCCeEEEEEecCCCCHHHHH--HHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhh-hhhhhhccccchhHhhhhh
Confidence 47899999999999999999 99999999999999988 33 4445 99999999999 5669999
Q ss_pred CCC------hhhHHHHHHHHHHH
Q 043574 90 PPT------LSNCKAQLETCLES 106 (530)
Q Consensus 90 lp~------~~d~r~r~e~aLE~ 106 (530)
|+. +++.++++++.||-
T Consensus 129 fGLev~Gv~~~er~~~a~~~l~~ 151 (386)
T COG4175 129 FGLEVQGVPKAEREERALEALEL 151 (386)
T ss_pred cceeecCCCHHHHHHHHHHHHHH
Confidence 954 66667788887763
No 21
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.1e-13 Score=135.32 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=65.3
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---------eccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---------AESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---------~~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++....-..|+.++|.||||||||||+ +++.++..+++|+++++= ++.++ ++||+++|||| ++.||
T Consensus 35 l~~vsl~i~~Ge~~~llGpsGsGKSTLL--r~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 35 VDDVSLTIYKGEIFALLGASGCGKSTLL--RMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN-MMFQSYALFPHMTVEQN 111 (377)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhCCCCCCceEEEECCEECCCCCHHHCCEE-EEeCCCccCCCCCHHHH
Confidence 4444333458999999999999999999 999999999988887761 13355 88999999999 55599
Q ss_pred CCCCC------hhhHHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~~ 107 (530)
++++. ..+.+++++++|+.+
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l 137 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLV 137 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 99853 334455666666654
No 22
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.31 E-value=8.6e-13 Score=132.87 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=65.1
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---------eccccCCCCCCCCCCccchh-cc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---------AESIKDHHPQHNQSFPWSSW-SN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---------~~~Ig~mvfQ~~nLFPHtsv-eN 87 (530)
|++....-..|+.++|.||||||||||+ +++.++..+++|+++++= ++.++ ++||++.||||+++ ||
T Consensus 20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLL--r~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig-~v~Q~~~lfp~~tv~eN 96 (353)
T TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLL--RIIAGLERQTAGTIYQGGRDITRLPPQKRDYG-IVFQSYALFPNLTVADN 96 (353)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEeCCcccCCCCcHHHH
Confidence 3333333357999999999999999999 999999999988877751 13455 88999999999555 99
Q ss_pred CCCCC------hhhHHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~~ 107 (530)
+.++. .++.+++++++++.+
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~l 122 (353)
T TIGR03265 97 IAYGLKNRGMGRAEVAERVAELLDLV 122 (353)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 99853 234456666666654
No 23
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=7.7e-13 Score=133.30 Aligned_cols=87 Identities=25% Similarity=0.273 Sum_probs=65.1
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++.|||| ++.+|
T Consensus 22 l~~isl~i~~Ge~~~llGpsGsGKSTLL--r~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~vfQ~~~lfp~~tv~eN 98 (351)
T PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVL--RLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC-MVFQSYALFPHMSLGEN 98 (351)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEeCCcccCCCCCHHHH
Confidence 4443333458999999999999999999 9999999999888777611 3455 88999999999 55599
Q ss_pred CCCCC------hhhHHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~~ 107 (530)
++++. .++.+++++++|+.+
T Consensus 99 i~~~l~~~~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 99 VGYGLKMLGVPKEERKQRVKEALELV 124 (351)
T ss_pred HHHHHhHcCCCHHHHHHHHHHHHHHc
Confidence 99853 233455666655554
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2e-12 Score=130.30 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=63.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---------eccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---------AESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---------~~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++..-.-..|+.++|.||||||||||+ +++.++..+++|+++++= .+.|+ ++||+++|||| ++.+|
T Consensus 20 l~~vsl~i~~Ge~~~llG~sGsGKSTLL--r~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~v~Q~~~lfp~~tv~eN 96 (356)
T PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLL--RMVAGLERITSGEIWIGGRVVNELEPADRDIA-MVFQNYALYPHMSVREN 96 (356)
T ss_pred EeeeeEEEcCCCEEEEECCCCCcHHHHH--HHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEeCCccccCCCCHHHH
Confidence 4443333458999999999999999999 999999999988877761 13455 78999999999 55599
Q ss_pred CCCCC------hhhHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~ 106 (530)
+.++. ..+.+++++++|+.
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~ 121 (356)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARI 121 (356)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHH
Confidence 99853 23334555555554
No 25
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3.2e-12 Score=126.39 Aligned_cols=83 Identities=25% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--------------EeccccCCCCCCCCCCccchh-ccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--------------FAESIKDHHPQHNQSFPWSSW-SNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--------------l~~~Ig~mvfQ~~nLFPHtsv-eNVal 90 (530)
..|+.++|+||||+|||||| |+++++.++..|++.++ +++++| |.||+|||-|.+++ +||..
T Consensus 28 ~~GE~VaiIG~SGaGKSTLL--R~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG-mIfQ~~nLv~r~sv~~NVl~ 104 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLL--RSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG-MIFQQFNLVPRLSVLENVLL 104 (258)
T ss_pred CCCcEEEEECCCCCcHHHHH--HHHhcccCCCcceEEecccchhccchHHHHHHHHhce-eEeccCCcccccHHHHHHHh
Confidence 48899999999999999999 99999999998888877 345667 89999999999555 99988
Q ss_pred CC---------------hhhHHHHHHHHHHHH--HHHhH
Q 043574 91 PT---------------LSNCKAQLETCLESM--AERGI 112 (530)
Q Consensus 91 p~---------------~~d~r~r~e~aLE~~--a~~~v 112 (530)
+. ++| ++++-++||.+ .++|.
T Consensus 105 grl~~~s~~~slfglfsk~d-k~~Al~aLervgi~~~A~ 142 (258)
T COG3638 105 GRLGYTSTWRSLFGLFSKED-KAQALDALERVGILDKAY 142 (258)
T ss_pred hhcccchHHHHHhCCCCHHH-HHHHHHHHHHcCcHHHHH
Confidence 44 555 66777777653 44443
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.26 E-value=1.6e-12 Score=132.28 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++....-..|+.++|.||||||||||+ +++.++..+++|+++++=. +.++ ++||++.|||| ++.+|
T Consensus 30 l~~vsl~i~~Ge~~~LlGpsGsGKSTLL--r~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~vfQ~~~lfp~ltv~eN 106 (375)
T PRK09452 30 ISNLDLTINNGEFLTLLGPSGCGKTTVL--RLIAGFETPDSGRIMLDGQDITHVPAENRHVN-TVFQSYALFPHMTVFEN 106 (375)
T ss_pred EeeeEEEEeCCCEEEEECCCCCcHHHHH--HHHhCCCCCCceEEEECCEECCCCCHHHCCEE-EEecCcccCCCCCHHHH
Confidence 3333333358999999999999999999 9999999999887776611 3345 78999999999 45599
Q ss_pred CCCCC------hhhHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~ 106 (530)
+.++. ..+.+++++++|+.
T Consensus 107 i~~~l~~~~~~~~~~~~~~~~~l~~ 131 (375)
T PRK09452 107 VAFGLRMQKTPAAEITPRVMEALRM 131 (375)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 98853 22234455555544
No 27
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.26 E-value=4.5e-12 Score=122.77 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=70.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--------------EeccccCCCCCCCCCCcc-
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--------------FAESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--------------l~~~Ig~mvfQ~~nLFPH- 82 (530)
|++..-.-..|+.+-|.||||+|||||+ +++-+-+.|..|.+.+. ++++|| ++||+|-|.||
T Consensus 18 L~~vs~~i~~Gef~fl~GpSGAGKSTll--kLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IG-vVFQD~rLL~~~ 94 (223)
T COG2884 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLL--KLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG-VVFQDFRLLPDR 94 (223)
T ss_pred hhCceEeecCceEEEEECCCCCCHHHHH--HHHHhhhcCCCceEEECCeecccccccccchhhheee-eEeeeccccccc
Confidence 3333333458899999999999999998 88888899999988887 457788 99999999999
Q ss_pred chhccCCCCC------hhhHHHHHHHHHHH
Q 043574 83 SSWSNCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 83 tsveNValp~------~~d~r~r~e~aLE~ 106 (530)
++.|||++|- ..+.++++.++|+-
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~ 124 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDL 124 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHH
Confidence 6669999965 66678899888873
No 28
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.24 E-value=3.3e-12 Score=122.98 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=68.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--------------Ee-ccccCCCCCCCCCCcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--------------FA-ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--------------l~-~~Ig~mvfQ~~nLFPH 82 (530)
|+.-...-..|+.++|+||||+|||||+ .++++++.+++|++++. ++ +.++ ++||+|.|.|+
T Consensus 26 L~~V~L~v~~Ge~vaiVG~SGSGKSTLl--~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vG-fVFQSF~Lip~ 102 (228)
T COG4181 26 LKGVELVVKRGETVAIVGPSGSGKSTLL--AVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG-FVFQSFHLIPN 102 (228)
T ss_pred eecceEEecCCceEEEEcCCCCcHHhHH--HHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcccee-EEEEeeecccc
Confidence 3333444458899999999999999999 99999999999999887 55 6677 88999999999
Q ss_pred -chhccCCCCC------hhhHHHHHHHHHHH
Q 043574 83 -SSWSNCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 83 -tsveNValp~------~~d~r~r~e~aLE~ 106 (530)
+..|||++|. ..|.++++...|+.
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~ 133 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEA 133 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHH
Confidence 5559999976 44456666666653
No 29
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.23 E-value=4.5e-12 Score=123.05 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE------------------------EeccccCCCCCCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD------------------------FAESIKDHHPQHNQSF 80 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id------------------------l~~~Ig~mvfQ~~nLF 80 (530)
..+|.++.|+|.||+||||+| ||+|-++.|..|.+.|. ++.+++ |+||+|||+
T Consensus 29 A~~GdVisIIGsSGSGKSTfL--RCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~-mVFQ~FNLW 105 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFL--RCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLG-MVFQHFNLW 105 (256)
T ss_pred cCCCCEEEEecCCCCchhHHH--HHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhh-Hhhhhcchh
Confidence 358899999999999999999 99999999998888876 112224 889999999
Q ss_pred ccch-hccCCC-CC------hhhHHHHHHHHHHH
Q 043574 81 PWSS-WSNCEP-PT------LSNCKAQLETCLES 106 (530)
Q Consensus 81 PHts-veNVal-p~------~~d~r~r~e~aLE~ 106 (530)
+|++ .||+.. |. ++++.++++.+|..
T Consensus 106 sHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~k 139 (256)
T COG4598 106 SHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAK 139 (256)
T ss_pred HHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHH
Confidence 9955 599988 44 77788888888864
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.23 E-value=2.5e-12 Score=130.21 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCC--ceEEEEE---------eccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPH--LTGYVDF---------AESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~--Gtg~Idl---------~~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++....-..|+.++|+||||||||||+ +++.++..+++ |+++++= .+.|+ ++||++.|||| ++
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLL--r~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig-~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLL--RAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA-LLFQNYALFPHLKV 96 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE-EEECCcccCCCCcH
Confidence 45554444468999999999999999999 99999999998 8777651 13455 78999999999 55
Q ss_pred hccCCCCC------hhhHHHHHHHHHHH
Q 043574 85 WSNCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 85 veNValp~------~~d~r~r~e~aLE~ 106 (530)
.+|++++. ..+.+++++++|+.
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~ 124 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKL 124 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 59998743 23334555555554
No 31
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.2e-11 Score=120.97 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=60.2
Q ss_pred cchhhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc------CCCCCCCCCCcc
Q 043574 9 IPRPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK------DHHPQHNQSFPW 82 (530)
Q Consensus 9 iprp~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig------~mvfQ~~nLFPH 82 (530)
.|||.|| +...--..|+.+|+.||||||||||| +++++|-.|++|.+.++- +.|+ ..+||+..|+||
T Consensus 16 ~~~~~le----~vsL~ia~ge~vv~lGpSGcGKTTLL--nl~AGf~~P~~G~i~l~~-r~i~gPgaergvVFQ~~~LlPW 88 (259)
T COG4525 16 KPRSALE----DVSLTIASGELVVVLGPSGCGKTTLL--NLIAGFVTPSRGSIQLNG-RRIEGPGAERGVVFQNEALLPW 88 (259)
T ss_pred cchhhhh----ccceeecCCCEEEEEcCCCccHHHHH--HHHhcCcCcccceEEECC-EeccCCCccceeEeccCccchh
Confidence 3566555 34444568999999999999999999 999999999977776663 3442 367899999999
Q ss_pred -chhccCCCCC
Q 043574 83 -SSWSNCEPPT 92 (530)
Q Consensus 83 -tsveNValp~ 92 (530)
++.+|++|+.
T Consensus 89 l~~~dNvafgL 99 (259)
T COG4525 89 LNVIDNVAFGL 99 (259)
T ss_pred hHHHHHHHHHH
Confidence 4559999944
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.19 E-value=1.4e-11 Score=124.25 Aligned_cols=72 Identities=25% Similarity=0.268 Sum_probs=57.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---------eccccCCCCCCCCCCccch-hc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---------AESIKDHHPQHNQSFPWSS-WS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---------~~~Ig~mvfQ~~nLFPHts-ve 86 (530)
+|++..-.-..|+.++|.||||||||||+ +++.++..+++|+++++= ++.++ ++||++++|||++ .+
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLL--r~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~-~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLL--RIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG-FVFQHYALFRHMTVFD 93 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEECCCCCHHHCCEE-EEecCcccCCCCcHHH
Confidence 34444444468999999999999999999 999999999988887751 12455 7789999999944 49
Q ss_pred cCCCC
Q 043574 87 NCEPP 91 (530)
Q Consensus 87 NValp 91 (530)
|+.++
T Consensus 94 ni~~~ 98 (353)
T PRK10851 94 NIAFG 98 (353)
T ss_pred HHHhh
Confidence 99885
No 33
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.16 E-value=1.5e-11 Score=124.05 Aligned_cols=87 Identities=25% Similarity=0.258 Sum_probs=65.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-----------eccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-----------AESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-----------~~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||||||||+ |+++++.+|++|+++++ + ++.|+ ++||++++||+
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLl--r~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig-~v~Q~~~l~~~ 96 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLI--RCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIG-MIFQHFNLLSS 96 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEE-EEECCcccccc
Confidence 34444444468999999999999999999 99999999998888876 1 12455 78999999998
Q ss_pred -chhccCCCCC------hhhHHHHHHHHHHH
Q 043574 83 -SSWSNCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 83 -tsveNValp~------~~d~r~r~e~aLE~ 106 (530)
++.+|++++. .++.++++.++|+.
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~ 127 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLAL 127 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5559998743 23345556665554
No 34
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.14 E-value=2.1e-11 Score=124.10 Aligned_cols=85 Identities=21% Similarity=0.173 Sum_probs=63.2
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---------------eccccCCCCCCCCCCcc-
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---------------AESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---------------~~~Ig~mvfQ~~nLFPH- 82 (530)
++..-.-..|++++|+||||||||||+ ++++++..+.+|+++++= ++.++ ++||++.||||
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLL--r~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~-~v~Q~~~l~~~~ 86 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTV--RMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIG-MVFQQFALFPHM 86 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHH--HHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEE-EEECCCcCCCCC
Confidence 343333458999999999999999999 999999999988888761 23456 78999999999
Q ss_pred chhccCCCCC------hhhHHHHHHHHHHH
Q 043574 83 SSWSNCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 83 tsveNValp~------~~d~r~r~e~aLE~ 106 (530)
++.+|+.++. .++.++++.++|+.
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~ 116 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKL 116 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5559998732 23334455555553
No 35
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.13 E-value=2.9e-11 Score=119.97 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=59.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--------------EeccccCCCCCCCCCCcc-
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--------------FAESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--------------l~~~Ig~mvfQ~~nLFPH- 82 (530)
+.+-...-.+|++++|+||||+|||||+ |++-++..|++|+++|+ +++.+| +.||+..||-.
T Consensus 24 ld~v~l~V~~Gei~~iiGgSGsGKStlL--r~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G-vlFQ~gALFssl 100 (263)
T COG1127 24 LDGVDLDVPRGEILAILGGSGSGKSTLL--RLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMG-VLFQQGALFSSL 100 (263)
T ss_pred ecCceeeecCCcEEEEECCCCcCHHHHH--HHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhee-EEeecccccccc
Confidence 3344444468999999999999999999 99999999999999988 224456 88999999999
Q ss_pred chhccCCCCC
Q 043574 83 SSWSNCEPPT 92 (530)
Q Consensus 83 tsveNValp~ 92 (530)
+++|||++|-
T Consensus 101 tV~eNVafpl 110 (263)
T COG1127 101 TVFENVAFPL 110 (263)
T ss_pred chhHhhheeh
Confidence 4559999977
No 36
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2.1e-11 Score=123.19 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---------eccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---------AESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---------~~~Ig~mvfQ~~nLFPH-tsve 86 (530)
+|++....-..|+.++|+||||||||||+ +++.++..+++|+++++= .+.++ ++||++.+||| ++.+
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL--~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~-~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLL--RMIAGLEDITSGDLFIGEKRMNDVPPAERGVG-MVFQSYALYPHLSVAE 94 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhCCCCCCceEEEECCEECCCCCHhHCCEE-EEeCCcccCCCCCHHH
Confidence 34454444458999999999999999999 999999999988877641 12345 77899999999 5559
Q ss_pred cCCCCC------hhhHHHHHHHHHHH
Q 043574 87 NCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 87 NValp~------~~d~r~r~e~aLE~ 106 (530)
|+.++. ..+.+++++++|+.
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~ 120 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEV 120 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHH
Confidence 998743 22334455555553
No 37
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.07 E-value=7.1e-11 Score=121.88 Aligned_cols=155 Identities=26% Similarity=0.275 Sum_probs=103.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE----------eccccCCCCCCCCCCccchhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF----------AESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl----------~~~Ig~mvfQ~~nLFPHtsve 86 (530)
+|++..-.-.+|+.++|+||||||||||+ +++.++.+|++|++.++= ++.|+ ++||++.||+.|..|
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl--~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~-~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLL--MLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS-VFAQDAHLFDTTVRD 426 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE-EEccCcccccccHHH
Confidence 56666655679999999999999999998 999999999988888761 12455 889999999999999
Q ss_pred cCCCCC-hhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 87 NCEPPT-LSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 87 NValp~-~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
||.++. ..+ +++++++++.. | -.+....| -+|+||-+ ++++. +.|++---..--.||+
T Consensus 427 NI~~g~~~~~-~e~i~~al~~a-------~---l~~~i~~l--p~GldT~i----ge~G~----~LSGGQrQRiaiARal 485 (529)
T TIGR02868 427 NLRLGRPDAT-DEELWAALERV-------G---LADWLRSL--PDGLDTVL----GEGGA----RLSGGERQRLALARAL 485 (529)
T ss_pred HHhccCCCCC-HHHHHHHHHHc-------C---CHHHHHhC--cccccchh----ccccC----cCCHHHHHHHHHHHHH
Confidence 999965 222 34555555431 1 12333333 36888854 32221 2344444445567777
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVG 204 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~ 204 (530)
+. ++ .++=+.|-+.+|..|-....++++..
T Consensus 486 l~-----~~----~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 486 LA-----DA----PILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred hc-----CC----CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 64 11 25666777788888866666666654
No 38
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.07 E-value=1.3e-10 Score=111.94 Aligned_cols=72 Identities=29% Similarity=0.350 Sum_probs=58.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccccCCCC-----------CCCCCCccch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIKDHHP-----------QHNQSFPWSS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig~mvf-----------Q~~nLFPHts 84 (530)
+|||...--..|+.++|.||||||||||+ +.++.+..+++|+++ |. +++....| |.+.|||.++
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStll--k~va~Lisp~~G~l~--f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLL--KIVASLISPTSGTLL--FEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHH--HHHHhccCCCCceEE--EcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45665555679999999999999999998 999999999966655 55 45542222 9999999999
Q ss_pred hccCCCCC
Q 043574 85 WSNCEPPT 92 (530)
Q Consensus 85 veNValp~ 92 (530)
.+|+.||-
T Consensus 94 eDNlifP~ 101 (223)
T COG4619 94 EDNLIFPW 101 (223)
T ss_pred hhccccch
Confidence 99999987
No 39
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.5e-10 Score=116.13 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---------------eccccCCCCCCCCCCccc-hhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---------------AESIKDHHPQHNQSFPWS-SWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---------------~~~Ig~mvfQ~~nLFPHt-sveNVa 89 (530)
..|+.++|+||||||||||+ +++.++..+++|+++++= .+.++ ++||++.+|||+ +.+|+.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl--~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~ 98 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLI--NAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG-YVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEccccccccccchhhCCEE-EEcCCcccCCCCcHHHHHH
Confidence 47899999999999999998 999999999988877641 12344 678999999994 559998
Q ss_pred CCChhhHHHHHHHHHH
Q 043574 90 PPTLSNCKAQLETCLE 105 (530)
Q Consensus 90 lp~~~d~r~r~e~aLE 105 (530)
++.....+++++++|+
T Consensus 99 ~~~~~~~~~~~~~~l~ 114 (352)
T PRK11144 99 YGMAKSMVAQFDKIVA 114 (352)
T ss_pred hhhhhhhHHHHHHHHH
Confidence 7542222334444444
No 40
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.05 E-value=2.3e-10 Score=119.87 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=104.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++....-.+|+.++|+||||||||||+ +++.++-+|++|+++++ +++.|+ .+||++.||+.|..
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl--~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~-~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLA--SLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA-MVQQDPVVLADTFL 432 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHH--HHHhcccCCCCceEEECCEEhhhCCHHHHHhheE-EEccCCccccchHH
Confidence 56666666679999999999999999998 99999999998888876 112344 67899999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
+||.+....+ .++++++++. .+-.+....|- .|+||-+.+ ++ .+.|++---..--.||+
T Consensus 433 ~NI~~~~~~~-d~~i~~a~~~----------~gl~~~i~~lp--~Gldt~i~e----~g----~~LSGGqrQRialARaL 491 (592)
T PRK10790 433 ANVTLGRDIS-EEQVWQALET----------VQLAELARSLP--DGLYTPLGE----QG----NNLSVGQKQLLALARVL 491 (592)
T ss_pred HHHHhCCCCC-HHHHHHHHHH----------cCcHHHHHhcc--ccccccccC----CC----CCCCHHHHHHHHHHHHH
Confidence 9999975222 3445555542 22334555552 367775432 11 12344444445566776
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
+. +. .++=+.|-+.+|..+-..-+.+++..+
T Consensus 492 l~-----~~----~illlDEpts~LD~~t~~~i~~~l~~~ 522 (592)
T PRK10790 492 VQ-----TP----QILILDEATANIDSGTEQAIQQALAAV 522 (592)
T ss_pred Hh-----CC----CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 64 11 356677878888888666666666544
No 41
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.03 E-value=9.2e-11 Score=107.48 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=55.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+||+
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 94 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFL--KLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIG-MVFQDHRLLSD 94 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhce-EEecCcccccc
Confidence 44554444468999999999999999999 9999998888777776510 1234 66899999998
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 95 ~tv~e~l~~~ 104 (216)
T TIGR00960 95 RTVYDNVAFP 104 (216)
T ss_pred ccHHHHHHHH
Confidence 556999764
No 42
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.00 E-value=1.8e-10 Score=105.46 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=55.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||+ ++.
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 96 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTL--RMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG-FVSDSTGLYDRLTAR 96 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCcCCCCceEEECCEEcccCHHHHHhhEE-EecCCcccCcCCCHH
Confidence 45555555568999999999999999998 9999998899888777511 2234 66899999998 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 97 e~l~~ 101 (218)
T cd03266 97 ENLEY 101 (218)
T ss_pred HHHHH
Confidence 99875
No 43
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.00 E-value=2.2e-10 Score=117.72 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----e--------------ccccCCCCCCCCCCcc-chhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----A--------------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----~--------------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
.|+.++|+||||+|||||+ +++.++..+++|+++++- + +.++ ++||++++||| ++.+
T Consensus 49 ~Gei~~I~G~nGsGKSTLl--r~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~-~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLL--RAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS-MVFQKFALMPWLTVEE 125 (382)
T ss_pred CCCEEEEECCCCCcHHHHH--HHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE-EEECCCcCCCCCcHHH
Confidence 8899999999999999999 999999999989888852 1 1345 77899999999 5559
Q ss_pred cCCCCC------hhhHHHHHHHHHHHH
Q 043574 87 NCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 87 NValp~------~~d~r~r~e~aLE~~ 107 (530)
|+.++. .++.+++++++|+.+
T Consensus 126 Ni~~~~~~~g~~~~~~~~~a~e~le~v 152 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELV 152 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 998742 233345666666553
No 44
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.00 E-value=1.7e-10 Score=105.70 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=54.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+||+ ++.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~ 93 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTL--KMLTGELRPTSGTAYINGYSIRTDRKAARQSLG-YCPQFDALFDELTVR 93 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEecccchHHHhhhEE-EecCcCCccccCCHH
Confidence 45554444468999999999999999999 9999998899887776411 1234 67899999998 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 94 ~~l~~ 98 (220)
T cd03263 94 EHLRF 98 (220)
T ss_pred HHHHH
Confidence 99876
No 45
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.00 E-value=3e-10 Score=113.87 Aligned_cols=64 Identities=27% Similarity=0.209 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCcc-chhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++.+||| ++.+|+.
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl--~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~ 97 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLI--RLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG-YVFQEARLFPHLSVRGNLR 97 (354)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECccCccccccchhhCCeE-EEecCCccCCCCcHHHHHH
Confidence 57899999999999999998 9999999999887776410 1233 66899999999 5559998
Q ss_pred CCC
Q 043574 90 PPT 92 (530)
Q Consensus 90 lp~ 92 (530)
++.
T Consensus 98 ~~~ 100 (354)
T TIGR02142 98 YGM 100 (354)
T ss_pred HHh
Confidence 743
No 46
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.99 E-value=1.4e-10 Score=105.58 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=55.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~nLFPH 82 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..++.|+++++-. +.++ ++||++.+||+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 92 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLL--KLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG-VVFQDFRLLPD 92 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE-EEecCchhccC
Confidence 45555555568999999999999999999 9999998888777766410 1233 66799999998
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 93 ~t~~~~l~~~ 102 (214)
T cd03292 93 RNVYENVAFA 102 (214)
T ss_pred CcHHHHHHHH
Confidence 555999764
No 47
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.98 E-value=2.5e-10 Score=104.51 Aligned_cols=72 Identities=21% Similarity=0.143 Sum_probs=55.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++-. +.++ ++||+.++||. +
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 91 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLL--KTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG-YVPEGRRIFPELT 91 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE-EeccccccCCCCc
Confidence 34454444468999999999999999998 9999999999888777511 1234 66899999998 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 92 ~~~~l~~~ 99 (222)
T cd03224 92 VEENLLLG 99 (222)
T ss_pred HHHHHHHH
Confidence 55999774
No 48
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.98 E-value=4.1e-10 Score=104.71 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=55.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee-----------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA-----------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~-----------~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++ +. +.++ ++||++.+||.
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 93 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLL--RCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIG-MIFQHYNLIER 93 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheE-EEcCCCccccc
Confidence 45555555568999999999999999998 99999998998887765 10 1234 66899999998
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 94 ~tv~~~l~~~ 103 (243)
T TIGR02315 94 LTVLENVLHG 103 (243)
T ss_pred ccHHHHHhhc
Confidence 555999764
No 49
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=1.6e-10 Score=114.25 Aligned_cols=65 Identities=29% Similarity=0.310 Sum_probs=52.0
Q ss_pred ccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccccCCC------------CCCCCCCccchh-ccC
Q 043574 23 QHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIKDHH------------PQHNQSFPWSSW-SNC 88 (530)
Q Consensus 23 qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig~mv------------fQ~~nLFPHtsv-eNV 88 (530)
-.-..|++++|+||+|+|||||+ +++.++.+|++|+++ ++ ++|+.+. ||...+||++|+ ||+
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlf--NlitG~~~P~~G~v~--~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv 100 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLF--NLITGFYKPSSGTVI--FRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENV 100 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeee--eeecccccCCCceEE--ECCcccCCCCHHHHHhccceeecccccccCCCcHHHHH
Confidence 33468899999999999999999 999999999955554 55 5564222 599999999555 999
Q ss_pred CCC
Q 043574 89 EPP 91 (530)
Q Consensus 89 alp 91 (530)
+.+
T Consensus 101 ~va 103 (250)
T COG0411 101 AVG 103 (250)
T ss_pred HHH
Confidence 885
No 50
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=2.8e-10 Score=105.75 Aligned_cols=72 Identities=28% Similarity=0.307 Sum_probs=55.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE---e-----------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF---A-----------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl---~-----------~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++= . +.++ ++||++.+||.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 91 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLL--RLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG-MLFQSGALFDS 91 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE-EEccCcccCCC
Confidence 34454444468999999999999999998 999999989988777641 0 1234 67899999998
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 92 ~tv~~~l~~~ 101 (235)
T cd03261 92 LTVFENVAFP 101 (235)
T ss_pred CcHHHHHHHH
Confidence 555998763
No 51
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.97 E-value=6.9e-10 Score=105.77 Aligned_cols=85 Identities=24% Similarity=0.211 Sum_probs=56.8
Q ss_pred hhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-CceEEEEEe-----------ccccCCCCCCCCCCccchh-c
Q 043574 20 NHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-HLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW-S 86 (530)
Q Consensus 20 ~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv-e 86 (530)
|+...-.+|+++.|+||||||||||+ ..+.++-.++ +-+|.+.++ +++| +.||+.-||||+++ +
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLl--s~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G-iLFQD~lLFphlsVg~ 96 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLL--SWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG-ILFQDALLFPHLSVGQ 96 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHH--HHHHhhcccCcceeeEEEECCeeccccchhhhhee-eeeccccccccccccc
Confidence 44444568999999999999999996 5555554443 344544433 3445 66799999999666 9
Q ss_pred cCCC--CC--hhhHHH-HHHHHHHHH
Q 043574 87 NCEP--PT--LSNCKA-QLETCLESM 107 (530)
Q Consensus 87 NVal--p~--~~d~r~-r~e~aLE~~ 107 (530)
|+.| |. +.++|+ .+.++||..
T Consensus 97 Nl~fAlp~~~KG~aRr~~a~aAL~~~ 122 (213)
T COG4136 97 NLLFALPATLKGNARRNAANAALERS 122 (213)
T ss_pred ceEEecCcccccHHHHhhHHHHHHHh
Confidence 9999 33 444444 445555543
No 52
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.96 E-value=3.9e-10 Score=108.51 Aligned_cols=87 Identities=24% Similarity=0.270 Sum_probs=61.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE------eccccCCCCCCCCCCcc-chhccCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF------AESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl------~~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
+|++....-..|+.++|+||||||||||+ +++.++..+++|+++++- .+.++ ++||+..+||+ ++.+|+.
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLl--k~l~Gl~~p~~G~i~~~g~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLL--RLLAGLETPSAGELLAGTAPLAEAREDTR-LMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCeEEEECCEEHHHhhCceE-EEecCccCCCCCcHHHHHH
Confidence 44554444468999999999999999999 999999989877776531 12344 67899999998 5569998
Q ss_pred CCChhhHHHHHHHHHHH
Q 043574 90 PPTLSNCKAQLETCLES 106 (530)
Q Consensus 90 lp~~~d~r~r~e~aLE~ 106 (530)
++.....+++++++|+.
T Consensus 104 ~~~~~~~~~~~~~~l~~ 120 (257)
T PRK11247 104 LGLKGQWRDAALQALAA 120 (257)
T ss_pred hcccchHHHHHHHHHHH
Confidence 75422223444444444
No 53
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=5.2e-10 Score=104.53 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=55.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+||. ++.+
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~e 93 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLL--RLIAGLERPDSGTILFGGEDATDVPVQERNVG-FVFQHYALFRHMTVFD 93 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECCcCCccccceE-EEecCCcccCCCCHHH
Confidence 45554444568999999999999999998 9999998888787776511 1234 66899999998 5559
Q ss_pred cCCCC
Q 043574 87 NCEPP 91 (530)
Q Consensus 87 NValp 91 (530)
|+.++
T Consensus 94 ~l~~~ 98 (239)
T cd03296 94 NVAFG 98 (239)
T ss_pred HHhhh
Confidence 99874
No 54
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=3.1e-10 Score=104.52 Aligned_cols=71 Identities=23% Similarity=0.164 Sum_probs=54.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||. ++.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTI--KMLTTLLKPTSGRATVAGHDVVREPREVRRRIG-IVFQDLSVDDELTGW 91 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEecCcChHHHhhcEE-EecCCccccccCcHH
Confidence 45555555568999999999999999998 9999998888777766411 1233 66899999998 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 92 ~~l~~ 96 (220)
T cd03265 92 ENLYI 96 (220)
T ss_pred HHHHH
Confidence 99866
No 55
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.96 E-value=2.7e-10 Score=104.26 Aligned_cols=72 Identities=26% Similarity=0.313 Sum_probs=54.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee------------ccccCCCCCCCCCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA------------ESIKDHHPQHNQSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~------------~~Ig~mvfQ~~nLFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++ +. +.++ ++||++.+||
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl--~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 95 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLL--NILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIG-FVFQSFNLLP 95 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHH--HHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEE-EEeeccccCC
Confidence 34444433458999999999999999999 99999988897877764 10 1234 5679999999
Q ss_pred c-chhccCCCC
Q 043574 82 W-SSWSNCEPP 91 (530)
Q Consensus 82 H-tsveNValp 91 (530)
. ++.+|+.++
T Consensus 96 ~~tv~e~l~~~ 106 (218)
T cd03255 96 DLTALENVELP 106 (218)
T ss_pred CCcHHHHHHHH
Confidence 8 656998763
No 56
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.95 E-value=6.7e-10 Score=110.03 Aligned_cols=89 Identities=26% Similarity=0.261 Sum_probs=67.7
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE------------eccccCCCCCC--CCCCc
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF------------AESIKDHHPQH--NQSFP 81 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl------------~~~Ig~mvfQ~--~nLFP 81 (530)
.++++..-.-..|+.++|+||||||||||+ |++.+++++++|+++++= .++|. |+||| .+|.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~--r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ-mVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLA--RLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQ-MVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHH--HHHhcccCCCCceEEECCcccCccccchhhcccee-EEecCCccccCc
Confidence 567776666679999999999999999998 999999999988888872 34556 88996 67889
Q ss_pred cchh-ccCCCCC----hhhHHHHHHHHHHHH
Q 043574 82 WSSW-SNCEPPT----LSNCKAQLETCLESM 107 (530)
Q Consensus 82 Htsv-eNValp~----~~d~r~r~e~aLE~~ 107 (530)
..++ +-|..|- .++.++++.++|+.+
T Consensus 98 ~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~V 128 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSKSQQRIAELLDQV 128 (252)
T ss_pred chhHHHHHhhhhccCCccHHHHHHHHHHHHc
Confidence 8555 5555543 444556666666654
No 57
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.95 E-value=5.5e-10 Score=110.52 Aligned_cols=79 Identities=23% Similarity=0.199 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
-..|++++|.||+|||||||| |++.++-+|.+|+++++ +.+.++ ++||++..... ++.|-|.+++
T Consensus 25 i~~G~i~~iiGpNG~GKSTLL--k~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia-~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLL--KCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA-YVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHH--HHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE-EeccCCCCCCCcEEeehHhhcC
Confidence 356999999999999999999 99999999998888887 234455 77898765555 4447777643
Q ss_pred -----------hhhHHHHHHHHHHHH
Q 043574 93 -----------LSNCKAQLETCLESM 107 (530)
Q Consensus 93 -----------~~d~r~r~e~aLE~~ 107 (530)
.+| ++.++++|+.+
T Consensus 102 ~p~~~~~~~~~~~D-~~~v~~aL~~~ 126 (258)
T COG1120 102 YPHLGLFGRPSKED-EEIVEEALELL 126 (258)
T ss_pred CcccccccCCCHhH-HHHHHHHHHHh
Confidence 445 55677777654
No 58
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=2.9e-10 Score=104.71 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=54.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE------eccccCCCCCCCCCCcc-chhccCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF------AESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl------~~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++= .+.++ ++||++.+||+ ++.+|+.
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLL--RIIAGLERPTSGEVLVDGEPVTGPGPDRG-YVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECccccCcEE-EEecccccccCCCHHHHHH
Confidence 34444443458999999999999999998 999999888877776641 12344 67899999998 5559986
Q ss_pred CC
Q 043574 90 PP 91 (530)
Q Consensus 90 lp 91 (530)
++
T Consensus 96 ~~ 97 (220)
T cd03293 96 LG 97 (220)
T ss_pred HH
Confidence 53
No 59
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=4.6e-10 Score=102.69 Aligned_cols=72 Identities=26% Similarity=0.276 Sum_probs=55.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+||. ++.+
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLL--RLIAGLERPDSGEILIDGRDVTGVPPERRNIG-MVFQDYALFPHLTVAE 91 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCEEcCcCchhhccEE-EEcCchhhccCCcHHH
Confidence 45665555568999999999999999998 9999998888777776411 1234 66899999998 5559
Q ss_pred cCCCC
Q 043574 87 NCEPP 91 (530)
Q Consensus 87 NValp 91 (530)
|+.++
T Consensus 92 ~l~~~ 96 (213)
T cd03259 92 NIAFG 96 (213)
T ss_pred HHHhH
Confidence 98763
No 60
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=2.6e-10 Score=114.05 Aligned_cols=72 Identities=26% Similarity=0.269 Sum_probs=56.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE--------------eccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF--------------AESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl--------------~~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++++= ++.|+ ++||++++||+
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLl--k~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig-~v~q~~~l~~~ 96 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLI--RCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIG-MIFQHFNLLSS 96 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEE-EEeCCCccCCC
Confidence 34444444468999999999999999999 999999999988877751 12345 77899999998
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 97 ~tv~eni~~~ 106 (343)
T PRK11153 97 RTVFDNVALP 106 (343)
T ss_pred CcHHHHHHHH
Confidence 555999764
No 61
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.94 E-value=3.7e-10 Score=104.56 Aligned_cols=72 Identities=25% Similarity=0.246 Sum_probs=54.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. ..++ ++||++.+||. +
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~t 91 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLF--NLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG-RTFQIPRLFPELT 91 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHH--HHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE-EEecccccccCCC
Confidence 34454444468999999999999999998 9999998888888776511 1133 56899999998 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 92 v~~~l~~~ 99 (236)
T cd03219 92 VLENVMVA 99 (236)
T ss_pred HHHHHHHH
Confidence 55998763
No 62
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.94 E-value=4.8e-10 Score=117.22 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=96.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-.+|+.++|+||||+|||||+ +++.++. |++|++.++ +++.|+ ++||++.||+-|..
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~--~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~-~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLL--NALLGFL-PYQGSLKINGIELRELDPESWRKHLS-WVGQNPQLPHGTLR 440 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCC-CCCcEEEECCEecccCCHHHHHhheE-EecCCCcCCCcCHH
Confidence 45555554568999999999999999998 8888888 888888776 112345 77899999999999
Q ss_pred ccCCCCCh-hhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 86 SNCEPPTL-SNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 86 eNValp~~-~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
|||.++.. .+ +++++++++.- | -.+..+.|. .|++|-+ ++++. +.|++---..--.||
T Consensus 441 eNI~~g~~~~~-~eei~~al~~a-------~---l~~~i~~lp--~G~dT~v----ge~G~----~LSGGQrQRialARA 499 (588)
T PRK11174 441 DNVLLGNPDAS-DEQLQQALENA-------W---VSEFLPLLP--QGLDTPI----GDQAA----GLSVGQAQRLALARA 499 (588)
T ss_pred HHhhcCCCCCC-HHHHHHHHHHh-------C---HHHHHHhcc--ccccccc----ccCCC----CCCHHHHHHHHHHHH
Confidence 99999641 22 34555554431 1 122333332 3666643 32211 234444444556666
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
++. + -.++=+.|-+.+|..|-.....+++..+
T Consensus 500 ll~-----~----~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 500 LLQ-----P----CQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred Hhc-----C----CCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 665 1 1345566666666666555555555443
No 63
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.94 E-value=4.5e-10 Score=103.74 Aligned_cols=71 Identities=25% Similarity=0.217 Sum_probs=55.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|.||||||||||+ +++.++..+++|+++++=. +.++ ++||+..+||. +
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 91 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTF--YMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG-YLPQEASIFRKLT 91 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE-EecCCccccccCc
Confidence 44554444568999999999999999999 9999999999888877510 1233 56899999998 5
Q ss_pred hhccCCC
Q 043574 84 SWSNCEP 90 (530)
Q Consensus 84 sveNVal 90 (530)
+.+|+.+
T Consensus 92 v~~~l~~ 98 (232)
T cd03218 92 VEENILA 98 (232)
T ss_pred HHHHHHH
Confidence 5599876
No 64
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=4.3e-10 Score=105.24 Aligned_cols=72 Identities=24% Similarity=0.247 Sum_probs=54.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+||. ++
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 92 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM--KMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG-YVIQQIGLFPHMTV 92 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCeEcCcCChHHhhcceE-EEccCccccCCCcH
Confidence 34454444568999999999999999998 9999998888787776411 1233 66899999998 55
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.+|+.++
T Consensus 93 ~e~l~~~ 99 (242)
T cd03295 93 EENIALV 99 (242)
T ss_pred HHHHHHH
Confidence 5998763
No 65
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=9.9e-10 Score=100.41 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhccCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWSNCEPP 91 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsveNValp 91 (530)
..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||+ ++.+|+.++
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl--~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLL--NLIAGFETPQSGRVLINGVDVTAAPPADRPVS-MLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEEcCcCCHhHccEE-EEecccccCCCCcHHHHHhcc
Confidence 58999999999999999998 9999999899888776511 1234 66899999998 555999874
No 66
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.93 E-value=5.3e-10 Score=116.84 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=97.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.++++|.++|| +++.|+ .+||++.||.-|+.
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~--~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~~TI~ 420 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLI--KLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSGTIR 420 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHH--HHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeecccHH
Confidence 34444444568999999999999999998 99999999999999985 223444 77899999998888
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
+||.++..+--+++++++++-- .-.+....|-+ |+||-+- +++. +.|++---..-=.||+
T Consensus 421 ~NI~~g~~~at~eei~~a~k~a----------~~~d~I~~lp~--g~dt~vg----e~G~----~LSgGQrQrlaiARal 480 (567)
T COG1132 421 ENIALGRPDATDEEIEEALKLA----------NAHEFIANLPD--GYDTIVG----ERGV----NLSGGQRQRLAIARAL 480 (567)
T ss_pred HHHhcCCCCCCHHHHHHHHHHh----------ChHHHHHhCcc--cccceec----CCCc----cCCHHHHHHHHHHHHH
Confidence 9999976211123444444322 22334444422 6666442 1111 1222222222234444
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
+. +- .++=+.|=+.++..+-..-.+|++..+
T Consensus 481 l~--------~~-~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 481 LR--------NP-PILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred hc--------CC-CEEEEeccccccCHHhHHHHHHHHHHH
Confidence 43 21 466677777777777666677777533
No 67
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.93 E-value=7.9e-10 Score=101.17 Aligned_cols=72 Identities=28% Similarity=0.241 Sum_probs=54.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE------eccccCCCCCCCCC---Cccchhcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF------AESIKDHHPQHNQS---FPWSSWSN 87 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl------~~~Ig~mvfQ~~nL---FPHtsveN 87 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++= .+.++ ++||++++ |+.++.+|
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~p~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLL--KAILGLLKPTSGSIRVFGKPLEKERKRIG-YVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHH--HHHcCCCCCCCCEEEECCccHHHHHhheE-EeccccccccCCCCcHHHH
Confidence 34444444468999999999999999998 999999999977777651 13355 77898877 34466699
Q ss_pred CCCC
Q 043574 88 CEPP 91 (530)
Q Consensus 88 Valp 91 (530)
+.++
T Consensus 91 l~~~ 94 (213)
T cd03235 91 VLMG 94 (213)
T ss_pred HHhc
Confidence 9774
No 68
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.93 E-value=3.7e-10 Score=110.21 Aligned_cols=71 Identities=27% Similarity=0.226 Sum_probs=54.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-------eccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-------AESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-------~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++++ + ++.++ ++||+..+||. ++.
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTI--RMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTGR 84 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcHH
Confidence 34444333468999999999999999998 99999999998887764 1 12345 67899999999 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 85 e~l~~ 89 (302)
T TIGR01188 85 ENLEM 89 (302)
T ss_pred HHHHH
Confidence 99865
No 69
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=5.4e-10 Score=103.53 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=55.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee-----------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA-----------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~-----------~~Ig~mvfQ~~nLFPH 82 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++ +. +.++ ++||+..+||.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 92 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLL--RCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG-MIFQQFNLIER 92 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE-EEcccCccccc
Confidence 45555544568999999999999999998 99999988888887765 11 1233 66899999998
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 93 ~tv~~~l~~~ 102 (241)
T cd03256 93 LSVLENVLSG 102 (241)
T ss_pred CcHHHHHHhh
Confidence 555999764
No 70
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=5.7e-10 Score=115.15 Aligned_cols=63 Identities=24% Similarity=0.227 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCcc-chhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
..|+.++|+||||||||||+ +++.++..|++|+++++=. +.++ ++||++.+||+ ++.||+.
T Consensus 52 ~~Gei~~LvG~NGsGKSTLL--r~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig-yv~Q~~~l~~~~Tv~enl~ 128 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMV--RLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA-MVFQSFALMPHMTVLDNTA 128 (400)
T ss_pred cCCCEEEEECCCCchHHHHH--HHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEE-EEECCCcCCCCCCHHHHHH
Confidence 48899999999999999999 9999999999888887510 1345 77899999999 5559998
Q ss_pred CC
Q 043574 90 PP 91 (530)
Q Consensus 90 lp 91 (530)
++
T Consensus 129 ~~ 130 (400)
T PRK10070 129 FG 130 (400)
T ss_pred HH
Confidence 74
No 71
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.92 E-value=6.2e-10 Score=101.63 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=55.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||. ++.+
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTL--RMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA-MVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECCcCCcccceEE-EEecChhhccCCCHHH
Confidence 45554444468999999999999999998 9999998888787776511 1234 66899999998 5569
Q ss_pred cCCCC
Q 043574 87 NCEPP 91 (530)
Q Consensus 87 NValp 91 (530)
|+.++
T Consensus 92 ~l~~~ 96 (213)
T cd03301 92 NIAFG 96 (213)
T ss_pred HHHHH
Confidence 98764
No 72
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.92 E-value=6.4e-10 Score=114.88 Aligned_cols=157 Identities=24% Similarity=0.264 Sum_probs=100.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-E----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-F----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-.+|+.++|+||||+|||||+ +++.++.+|++|++.++ . ++.++ .++|++.+|+.+..
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~--~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~-~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLL--NLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA-WVPQHPFLFAGTIA 413 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE-EEcCCCcccCcCHH
Confidence 56666665679999999999999999999 99999999998888876 1 12344 67899999999989
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
||+.++..+.-+++++++++. .+-.+.++.|. +|+||-+.+ +.. ..|++- ++|-.
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~----------~~l~~~i~~lp--~Gldt~v~e----~g~----~LSgGq-----~qri~ 468 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALER----------AGLDEFVAALP--QGLDTLIGE----GGA----GLSGGQ-----AQRLA 468 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHH----------cCcHHHHHhCc--ccccchhcc----ccc----cCCHHH-----HHHHH
Confidence 999986421112344444432 11234444443 488886543 111 123332 44544
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
+|-+--.+. .++=+.|-+.++..+....+.|++..+
T Consensus 469 laRal~~~~----~ililDE~ts~lD~~~~~~i~~~l~~~ 504 (529)
T TIGR02857 469 LARAFLRDA----PLLLLDEPTAHLDAETEALVTEALRAL 504 (529)
T ss_pred HHHHHhcCC----CEEEEeCcccccCHHHHHHHHHHHHHh
Confidence 442111121 355567777778888666677776654
No 73
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.92 E-value=6.1e-10 Score=101.42 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=54.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCCCCCCCcc-
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ~~nLFPH- 82 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++-. +.++ ++||+..+||.
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 91 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLL--RCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG-MVFQQFNLFPHL 91 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEECCccchhHHHHHhcce-EEecccccCCCC
Confidence 34444433458999999999999999999 9999998888887776511 1233 56799999998
Q ss_pred chhccCCCC
Q 043574 83 SSWSNCEPP 91 (530)
Q Consensus 83 tsveNValp 91 (530)
++.+|+.++
T Consensus 92 t~~e~l~~~ 100 (213)
T cd03262 92 TVLENITLA 100 (213)
T ss_pred cHHHHHHhH
Confidence 555998764
No 74
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=7.6e-10 Score=102.07 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=58.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ +.||++++|+.++.
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 94 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLI--NLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG-VVLQDTFLFSGTIM 94 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE-EecCCchhhhhHHH
Confidence 56666655678999999999999999998 9999998899888877511 1234 66899999998777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 95 ~~~~~~~ 101 (229)
T cd03254 95 ENIRLGR 101 (229)
T ss_pred HHHhccC
Confidence 9998854
No 75
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.92 E-value=5e-10 Score=110.37 Aligned_cols=88 Identities=25% Similarity=0.272 Sum_probs=67.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-Ee---------ccccCCCCCCCCCCccchh-
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-FA---------ESIKDHHPQHNQSFPWSSW- 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l~---------~~Ig~mvfQ~~nLFPHtsv- 85 (530)
+|++..-.-..|++++|+||||+|||||+ +++.++-.|++|++.++ .+ +.++ .+||++.++|++|+
T Consensus 20 ~l~~vs~~i~~Gei~gllG~NGAGKTTll--k~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~~ 96 (293)
T COG1131 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLL--KILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTVR 96 (293)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCHHHHH--HHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccHH
Confidence 34444444568999999999999999998 99999999998888877 11 3456 77899999999555
Q ss_pred ccCCCCC------hhhHHHHHHHHHHHH
Q 043574 86 SNCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 86 eNValp~------~~d~r~r~e~aLE~~ 107 (530)
||+.+-. .++.+++++++|+.+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~ 124 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELF 124 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHc
Confidence 9998822 234577888888764
No 76
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.92 E-value=7.1e-10 Score=118.59 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=98.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++++ +++.|+ .+||++.||+-|..
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl--klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~-~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLL--RLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG-VVLQNGRLMSGSIF 544 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE-EEccCCccCcccHH
Confidence 45555554568999999999999999999 99999999999998887 123445 77899999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
||+.++...+ .+++.++++.. +-.+....| -+|+||-+ ++++ ...|++---...-.||+
T Consensus 545 eNi~~~~~~~-~e~i~~al~~a----------~l~~~i~~l--p~G~dt~i----ge~G----~~LSGGQrQRialARAl 603 (686)
T TIGR03797 545 ENIAGGAPLT-LDEAWEAARMA----------GLAEDIRAM--PMGMHTVI----SEGG----GTLSGGQRQRLLIARAL 603 (686)
T ss_pred HHHhcCCCCC-HHHHHHHHHHc----------CcHHHHHhc--cccccccc----cCCC----CCCCHHHHHHHHHHHHH
Confidence 9999954222 23444443321 112333443 24777744 2211 12344433344455555
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVG 204 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~ 204 (530)
+. +- .++=+.|-+.+|..+-..-+.+++..
T Consensus 604 l~--------~p-~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 604 VR--------KP-RILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred hc--------CC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 53 11 34556676777777755556555543
No 77
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=6.5e-10 Score=106.10 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=55.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------ccccCCCCCCCCCCcc-chhccCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------ESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. ..++ ++||++.+||+ ++.+|+.
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLL--NLIAGFVPYQHGSITLDGKPVEGPGAERG-VVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEECCCCCCcEE-EEeCCCccCCCCcHHHHHH
Confidence 45554444468999999999999999999 9999999999777766411 1233 66899999998 6669997
Q ss_pred CC
Q 043574 90 PP 91 (530)
Q Consensus 90 lp 91 (530)
++
T Consensus 93 ~~ 94 (255)
T PRK11248 93 FG 94 (255)
T ss_pred hH
Confidence 64
No 78
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=8.2e-10 Score=100.87 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=53.1
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-------eccccCCCCCCCCCCcc-chhccCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-------AESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-------~~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
+++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++- .+.++ .+||++.+||. ++.||+.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTI--RMILGIILPDSGEVLFDGKPLDIAARNRIG-YLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCCchhHHHHccEE-EeccCCcCCcCCcHHHHHH
Confidence 3443333358999999999999999999 999999888877776651 12344 66899999998 5559986
Q ss_pred C
Q 043574 90 P 90 (530)
Q Consensus 90 l 90 (530)
+
T Consensus 93 ~ 93 (210)
T cd03269 93 Y 93 (210)
T ss_pred H
Confidence 5
No 79
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.91 E-value=6.8e-10 Score=116.98 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=101.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++.+|++|+++++= ++.|+ ++||++.||+.+..
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~--~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLL--QLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS-VVSQRVHLFSATLR 431 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee-EEcccchhhcccHH
Confidence 45665555578999999999999999999 999999999988888871 12344 77899999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
||+.++..+.-+++++++++...- .+.. .+-+|+||-+- ++. ...|++-.-..--.||+
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l----------~~~i---~~p~GldT~vg----e~g----~~LSgGqrqRialARal 490 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGL----------EKLL---EDDKGLNAWLG----EGG----RQLSGGEQRRLGIARAL 490 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCC----------HHHH---cCccccCchhc----CCC----CCCCHHHHHHHHHHHHH
Confidence 999996521113455555543211 1111 11567777542 211 12344444445556666
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
+. +. .++=+.|-+..+..+....+.+++..+
T Consensus 491 l~-----~~----~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 491 LH-----DA----PLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred hc-----CC----CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 54 11 355567777788888777777776554
No 80
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.91 E-value=5.1e-10 Score=101.44 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=54.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++++||
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 89 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLL--NIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG-YLFQNFALIE 89 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHH--HHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee-EEecchhhcc
Confidence 44554444458999999999999999999 9999998888787766411 1233 5579999999
Q ss_pred c-chhccCCC
Q 043574 82 W-SSWSNCEP 90 (530)
Q Consensus 82 H-tsveNVal 90 (530)
+ ++.+|+.+
T Consensus 90 ~~t~~e~~~~ 99 (206)
T TIGR03608 90 NETVEENLDL 99 (206)
T ss_pred CCcHHHHHHH
Confidence 8 55599876
No 81
>PRK10908 cell division protein FtsE; Provisional
Probab=98.91 E-value=6.2e-10 Score=102.71 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=54.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee-----------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA-----------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~-----------~~Ig~mvfQ~~nLFPH 82 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++ +. +.++ ++||++.+||.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 93 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLL--KLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIG-MIFQDHHLLMD 93 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheE-EEecCcccccc
Confidence 45554444568999999999999999998 99999998997877664 11 1233 56899999888
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 94 ~tv~~~l~~~ 103 (222)
T PRK10908 94 RTVYDNVAIP 103 (222)
T ss_pred ccHHHHHHhH
Confidence 555999774
No 82
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=9.3e-10 Score=102.69 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=56.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+|+. +
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 94 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTF--YMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG-YLPQEASIFRRLS 94 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE-EeccCCcccccCc
Confidence 45554444468999999999999999999 9999999999888877511 2234 67899999998 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 95 v~enl~~~ 102 (241)
T PRK10895 95 VYDNLMAV 102 (241)
T ss_pred HHHHHhhh
Confidence 55999764
No 83
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.90 E-value=9.3e-10 Score=114.73 Aligned_cols=156 Identities=20% Similarity=0.206 Sum_probs=99.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++....-..|+.++|.||||+|||||+ +++.++.+|++|+++++ +++.|+ .+||++.+|+.|..
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl--~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~-~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIA--NLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA-LVSQNVHLFNDTIA 434 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHH--HHHHhccCCCCceEEECCEEhhhcCHHHHHhhce-EEccCceeecchHH
Confidence 45555555568999999999999999999 99999999998888876 112334 77899999999999
Q ss_pred ccCCCCC--hhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHH
Q 043574 86 SNCEPPT--LSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWER 163 (530)
Q Consensus 86 eNValp~--~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~r 163 (530)
+||.++. ..+ .++++++++... -.+..+.|. .|+||-+. +++ ...|++---...-.|
T Consensus 435 ~Ni~~~~~~~~~-~~~i~~al~~~~----------l~~~i~~lp--~Gldt~ig----~~g----~~LSGGqrQRi~LAR 493 (582)
T PRK11176 435 NNIAYARTEQYS-REQIEEAARMAY----------AMDFINKMD--NGLDTVIG----ENG----VLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhcCCCCCCC-HHHHHHHHHHhC----------cHHHHHhcc--cccCceeC----CCC----CcCCHHHHHHHHHHH
Confidence 9999853 222 345666555321 122333332 46777442 211 224444444555666
Q ss_pred HHHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 164 AVYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 164 av~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
|++.=+ .++=+.|-+..|..+-..-+.+++..+
T Consensus 494 all~~~---------~ililDEptsaLD~~t~~~i~~~l~~~ 526 (582)
T PRK11176 494 ALLRDS---------PILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHhCC---------CEEEEECccccCCHHHHHHHHHHHHHH
Confidence 666511 344556666667766444455555443
No 84
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.90 E-value=4.7e-10 Score=102.31 Aligned_cols=72 Identities=22% Similarity=0.199 Sum_probs=54.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||. ++.+
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e 91 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTM--KIILGLIKPDSGEITFDGKSYQKNIEALRRIG-ALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCcCCCceEEEECCCcccchHHHHhhEE-EecCCCccCccCcHHH
Confidence 44554444468999999999999999999 9999998888777766411 1234 67899999998 5559
Q ss_pred cCCCC
Q 043574 87 NCEPP 91 (530)
Q Consensus 87 NValp 91 (530)
|+.++
T Consensus 92 ~l~~~ 96 (208)
T cd03268 92 NLRLL 96 (208)
T ss_pred HHHHH
Confidence 98764
No 85
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.90 E-value=1.4e-09 Score=99.79 Aligned_cols=72 Identities=26% Similarity=0.214 Sum_probs=57.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+.+|+++++- .+.++ ++||+..+|+.++.
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~ 95 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLL--LALFRLVELSSGSILIDGVDISKIGLHDLRSRIS-IIPQDPVLFSGTIR 95 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHH--HHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE-EECCCCccccchHH
Confidence 56665555568999999999999999998 999999989888777651 12234 66899999988777
Q ss_pred ccCCCC
Q 043574 86 SNCEPP 91 (530)
Q Consensus 86 eNValp 91 (530)
+|+.+.
T Consensus 96 enl~~~ 101 (221)
T cd03244 96 SNLDPF 101 (221)
T ss_pred HHhCcC
Confidence 999753
No 86
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.90 E-value=1e-09 Score=100.55 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=61.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
++++....-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.++|+ ++.
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLL--RILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL-YLGHAPGIKTTLSVL 91 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEecccccHHhhhheE-EeccccccCCCcCHH
Confidence 34554444468999999999999999998 9999998888888776511 1233 56799999998 555
Q ss_pred ccCCCCChhhHHHHHHHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESM 107 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~ 107 (530)
+|+.+.....-+++++++++.+
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~ 113 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARV 113 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHc
Confidence 9997753111134455555443
No 87
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.90 E-value=7.3e-10 Score=101.22 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=54.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+||.
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl--~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 93 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLL--KLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIG-VVFQDFRLLPD 93 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheE-EEecChhhccC
Confidence 55555544568999999999999999998 9999998888787776411 1233 56799999998
Q ss_pred -chhccCCC
Q 043574 83 -SSWSNCEP 90 (530)
Q Consensus 83 -tsveNVal 90 (530)
++.+|+.+
T Consensus 94 ~tv~~~l~~ 102 (214)
T TIGR02673 94 RTVYENVAL 102 (214)
T ss_pred CcHHHHHHH
Confidence 55599866
No 88
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.90 E-value=8.9e-10 Score=119.19 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=66.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-.+|+.++|+||||+|||||+ +++.++.+|++|++++| +++.|+ +++|++.+|+-+..
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl--~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~-~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVA--ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA-LVGQEPVLFSGSVR 572 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHH--HHHHhccCCCCCEEEECCEEHHhcCHHHHHhhce-EEecCccccccCHH
Confidence 46665555679999999999999999998 99999999998888887 113345 77899999999999
Q ss_pred ccCCCCChhhHHHHHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLE 105 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE 105 (530)
|||.++..+.-++++.++++
T Consensus 573 eNI~~g~~~~~~e~i~~al~ 592 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAK 592 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHH
Confidence 99999652111344555544
No 89
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.8e-09 Score=100.46 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhccCCCCC---
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWSNCEPPT--- 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsveNValp~--- 92 (530)
..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||+.++||. ++.+|+.++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~ 99 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLL--NLIAGFLTPASGSLTLNGQDHTTTPPSRRPVS-MLFQENNLFSHLTVAQNIGLGLNPG 99 (232)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCeecCcCChhhccEE-EEecccccccCCcHHHHHhcccccc
Confidence 57999999999999999998 9999999999887776521 1233 56799999998 5559998742
Q ss_pred ---hhhHHHHHHHHHHHH
Q 043574 93 ---LSNCKAQLETCLESM 107 (530)
Q Consensus 93 ---~~d~r~r~e~aLE~~ 107 (530)
..+.+++++++|+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~~ 117 (232)
T PRK10771 100 LKLNAAQREKLHAIARQM 117 (232)
T ss_pred cCCCHHHHHHHHHHHHHc
Confidence 112234555555554
No 90
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=1.1e-09 Score=111.57 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=51.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE----Ee-----------ccccCCCCCCCCCCccchh-ccCCCCC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD----FA-----------ESIKDHHPQHNQSFPWSSW-SNCEPPT 92 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id----l~-----------~~Ig~mvfQ~~nLFPHtsv-eNValp~ 92 (530)
.+++|.|+||+|||||+ +++.++..|+.|.+.++ ++ +.|| ++||+..||||.++ .|+.++.
T Consensus 25 GvTAlFG~SGsGKTsli--n~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriG-YVFQDARLFpH~tVrgNL~YG~ 101 (352)
T COG4148 25 GITALFGPSGSGKTSLI--NMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIG-YVFQDARLFPHYTVRGNLRYGM 101 (352)
T ss_pred ceEEEecCCCCChhhHH--HHHhccCCccccEEEECCEEeecccCCcccChhhheee-eEeeccccccceEEecchhhhh
Confidence 68999999999999999 99999999997766665 11 4556 88999999999555 9999976
No 91
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.89 E-value=7.3e-10 Score=101.09 Aligned_cols=73 Identities=23% Similarity=0.177 Sum_probs=53.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------ccccCCCCCCCC--CCccchhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------ESIKDHHPQHNQ--SFPWSSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------~~Ig~mvfQ~~n--LFPHtsve 86 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++. +|+.++.|
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLA--KILAGLIKESSGSILLNGKPIKAKERRKSIG-YVMQDVDYQLFTDSVRE 91 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEEhhhHHhhcceE-EEecChhhhhhhccHHH
Confidence 45554444568999999999999999998 9999999999777765411 2344 6688864 44446669
Q ss_pred cCCCCC
Q 043574 87 NCEPPT 92 (530)
Q Consensus 87 NValp~ 92 (530)
|+.++.
T Consensus 92 ~l~~~~ 97 (205)
T cd03226 92 ELLLGL 97 (205)
T ss_pred HHhhhh
Confidence 997743
No 92
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.89 E-value=9.5e-10 Score=117.87 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=97.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ +++.|+ .+||++.||+-|..
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl--klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~-~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIA--KLVAGLYQPWSGEILFDGIPREEIPREVLANSVA-MVDQDIFLFEGTVR 570 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee-EEecCChhhhccHH
Confidence 45555554568999999999999999998 99999999999998886 223455 77899999999999
Q ss_pred ccCCCCC-hhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 86 SNCEPPT-LSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 86 eNValp~-~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
|||.+.. ..+ .+++.++++.. | -.+..+.|. .|++|-+ ++++ .+.|++---...-.||
T Consensus 571 eNi~l~~~~~~-~~~i~~al~~~-------~---l~~~i~~lp--~gl~t~i----~e~G----~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 571 DNLTLWDPTIP-DADLVRACKDA-------A---IHDVITSRP--GGYDAEL----AEGG----ANLSGGQRQRLEIARA 629 (710)
T ss_pred HHhhCCCCCCC-HHHHHHHHHHh-------C---CHHHHHhCc--Cccccee----ccCC----CCCCHHHHHHHHHHHH
Confidence 9999854 122 33455444321 1 134444443 3677643 2221 1234443333444555
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGL 202 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~ 202 (530)
++. + -.++=+.|-+.+|..+-...+.+++
T Consensus 630 ll~-----~----p~iliLDEptS~LD~~te~~i~~~l 658 (710)
T TIGR03796 630 LVR-----N----PSILILDEATSALDPETEKIIDDNL 658 (710)
T ss_pred Hhh-----C----CCEEEEECccccCCHHHHHHHHHHH
Confidence 543 1 1355567777777777555555554
No 93
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.88 E-value=8.1e-10 Score=102.82 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=54.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||.++.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~ 98 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLL--KIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS-YCAQTPTLFGDTVY 98 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHH--HHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE-EEecccccccccHH
Confidence 34444444458999999999999999998 9999998899887776621 1233 66899999998777
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 99 enl~~ 103 (225)
T PRK10247 99 DNLIF 103 (225)
T ss_pred HHHHh
Confidence 99976
No 94
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.88 E-value=6.2e-10 Score=109.58 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=55.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-------eccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-------AESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-------~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++-.-.-..|++++|.||||+|||||+ +++.++..|++|+++|+ . ++.|+ ++||++++||+ ++.
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl--~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTL--RMLLGLTHPDAGSISLCGEPVPSRARHARQRVG-VVPQFDNLDPDFTVR 98 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEecccchHHHHhcEE-EEeccCcCCCCCcHH
Confidence 34444433458999999999999999998 99999999998888875 1 13455 77899999998 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
||+.+
T Consensus 99 e~l~~ 103 (306)
T PRK13537 99 ENLLV 103 (306)
T ss_pred HHHHH
Confidence 99975
No 95
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.88 E-value=1.8e-09 Score=99.30 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhccCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWSNCEPP 91 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsveNValp 91 (530)
-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++++||+ ++.+|+.++
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLL--NLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS-MLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEEcccCChhccceE-EEeccCccCCCCcHHHHHHhH
Confidence 458999999999999999998 9999999999888776411 2234 66899999998 666999764
No 96
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.88 E-value=1e-09 Score=114.02 Aligned_cols=155 Identities=22% Similarity=0.250 Sum_probs=97.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-.+|+.++|.||||+|||||+ +++.++-.|.+|+++++= ++.++ .+||++.+|+.+..
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLl--klL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~-~~~Q~~~lf~~Ti~ 431 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLF--QLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA-LVPQDPVLFAASVM 431 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHH--HHHHhccCCCCCEEEECCEEHHhcCHHHHHHhce-EEccCCccccccHH
Confidence 55555555569999999999999999998 999999999988888761 12345 67899999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
||+.++..+.-.+++.++|+. +|. .+.++.+. +|++|-+.+ . ....|++---..-..||+
T Consensus 432 ~Ni~~~~~~~~~~~~~~~l~~-------~~l---~~~i~~l~--~gl~t~i~~----~----g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 432 ENIRYGRPDATDEEVEAAARA-------AHA---HEFISALP--EGYDTYLGE----R----GVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhcCCCCCCHHHHHHHHHH-------cCc---HHHHHhCC--CCCCceeCC----C----CCcCCHHHHHHHHHHHHH
Confidence 999996521113445554442 121 23444442 466664322 1 112344444455566776
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLV 203 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~ 203 (530)
+.=+ .++=+.|-+.+|..+...-+.|.+.
T Consensus 492 ~~~~---------~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 492 LKDA---------PILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred HhCC---------CeEEEeCcccccCHHHHHHHHHHHH
Confidence 6411 2455666666666664444444443
No 97
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=7.1e-10 Score=102.74 Aligned_cols=71 Identities=23% Similarity=0.241 Sum_probs=53.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee-----------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA-----------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~-----------~~Ig~mvfQ~~nLFPH 82 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..++.|+++++ +. +.++ ++||+..+||.
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 96 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLI--RCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIG-MIFQHFNLLSS 96 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheE-EEccCcccCCC
Confidence 34444444468999999999999999998 99999999987877765 11 1233 56799999998
Q ss_pred -chhccCCC
Q 043574 83 -SSWSNCEP 90 (530)
Q Consensus 83 -tsveNVal 90 (530)
++.+|+.+
T Consensus 97 ~t~~e~l~~ 105 (233)
T cd03258 97 RTVFENVAL 105 (233)
T ss_pred CcHHHHHHH
Confidence 55599865
No 98
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.88 E-value=1.5e-09 Score=119.50 Aligned_cols=74 Identities=24% Similarity=0.210 Sum_probs=65.0
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccch
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHts 84 (530)
.+|++....-..|+.++|+|+||||||||+ |++.++..|.+|++.+| ++++|+ +++|++-||--++
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~--KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig-~V~Q~~~Lf~gSI 563 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLL--KLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG-YVLQDPFLFSGSI 563 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee-EEcccchhhcCcH
Confidence 356666666678999999999999999998 99999999999999998 456777 8899999999999
Q ss_pred hccCCCCC
Q 043574 85 WSNCEPPT 92 (530)
Q Consensus 85 veNValp~ 92 (530)
.||+++..
T Consensus 564 ~eNi~l~~ 571 (709)
T COG2274 564 RENIALGN 571 (709)
T ss_pred HHHHhcCC
Confidence 99999955
No 99
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=7.8e-10 Score=101.09 Aligned_cols=60 Identities=28% Similarity=0.271 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE----------eccccCCCCCCCCCCcc-chhccCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF----------AESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl----------~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
.| .++|+||||+|||||+ +++.++..+++|+++++= .+.++ ++||++.+||. ++.+|+.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~~l~~ 95 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLM--RILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG-YLPQEFGVYPNFTVREFLDY 95 (211)
T ss_pred CC-cEEEECCCCCCHHHHH--HHHhCCCCCCccEEEECCCccccchHHHHhheE-EecCCCcccccCCHHHHHHH
Confidence 47 9999999999999998 999999889977776651 12233 66899999998 55599876
No 100
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.88 E-value=1e-09 Score=99.12 Aligned_cols=71 Identities=21% Similarity=0.148 Sum_probs=52.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCCCC--CCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQHN--QSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ~~--nLFP 81 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++ .+|+
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLL--LHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG-LVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceeEEECCEEccccccchHHHHhhEE-EEecChhhcccc
Confidence 44554444568999999999999999998 9999999888777766410 1233 567886 4666
Q ss_pred cchhccCCC
Q 043574 82 WSSWSNCEP 90 (530)
Q Consensus 82 HtsveNVal 90 (530)
.++.+|+.+
T Consensus 84 ~tv~~nl~~ 92 (190)
T TIGR01166 84 ADVDQDVAF 92 (190)
T ss_pred ccHHHHHHH
Confidence 666699866
No 101
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.88 E-value=1.7e-09 Score=98.64 Aligned_cols=71 Identities=20% Similarity=0.048 Sum_probs=59.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++ ..|+ ++||++.+|+.++.+|+.++.
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl--~~i~G~~~~~~G~i~~~--g~i~-~~~q~~~l~~~t~~enl~~~~ 90 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLL--SALLGELEKLSGSVSVP--GSIA-YVSQEPWIQNGTIRENILFGK 90 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHH--HHHhCcCCCCCCeEEEc--CEEE-EEecCchhccCcHHHHhccCC
Confidence 56666666679999999999999999999 99999999997777654 3466 779999999878889999854
No 102
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.87 E-value=1.6e-09 Score=99.38 Aligned_cols=73 Identities=27% Similarity=0.260 Sum_probs=56.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..++.|+++++-. +.++ ++||+..+|+.++.
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 95 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLL--KLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG-YVPQDVTLFYGTLR 95 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE-EeCCCCccccchHH
Confidence 45555444568999999999999999998 8999998888787776511 1234 66899999987666
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.+..
T Consensus 96 e~l~~~~ 102 (220)
T cd03245 96 DNITLGA 102 (220)
T ss_pred HHhhcCC
Confidence 9998753
No 103
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.87 E-value=8e-10 Score=101.42 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=54.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+||
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~ 96 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLL--HLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLG-FIYQFHHLLP 96 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEE-EEecccccCC
Confidence 34444444468999999999999999999 9999998899888776510 1244 6689999999
Q ss_pred c-chhccCCC
Q 043574 82 W-SSWSNCEP 90 (530)
Q Consensus 82 H-tsveNVal 90 (530)
. ++.+|+.+
T Consensus 97 ~~tv~~~l~~ 106 (221)
T TIGR02211 97 DFTALENVAM 106 (221)
T ss_pred CCcHHHHHHH
Confidence 8 55599876
No 104
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=8.1e-10 Score=102.86 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=54.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-e--------------ccccCCCCCCCCCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-A--------------ESIKDHHPQHNQSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-~--------------~~Ig~mvfQ~~nLFP 81 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++= + +.++ ++||++.+||
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~-~v~q~~~~~~ 100 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLL--HLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLG-FIYQFHHLLP 100 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEE-EEecCcccCC
Confidence 44554444468999999999999999999 999999888988777651 0 1234 5689999999
Q ss_pred c-chhccCCC
Q 043574 82 W-SSWSNCEP 90 (530)
Q Consensus 82 H-tsveNVal 90 (530)
. ++.+|+.+
T Consensus 101 ~~tv~e~l~~ 110 (233)
T PRK11629 101 DFTALENVAM 110 (233)
T ss_pred CCCHHHHHHH
Confidence 8 55599876
No 105
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=8.2e-10 Score=107.04 Aligned_cols=72 Identities=22% Similarity=0.099 Sum_probs=56.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCC--CC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHN--QS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~--nL 79 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..++.|+++++=. +.|+ ++||++ .+
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig-~v~q~~~~~l 98 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLI--QNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIG-MVFQFPESQL 98 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEECccccccchHHHHHhheE-EEecChHhcc
Confidence 56665555568999999999999999999 9999999999888877611 1234 678975 68
Q ss_pred CccchhccCCCC
Q 043574 80 FPWSSWSNCEPP 91 (530)
Q Consensus 80 FPHtsveNValp 91 (530)
|+.++.+|+.++
T Consensus 99 ~~~tv~e~i~~~ 110 (286)
T PRK13646 99 FEDTVEREIIFG 110 (286)
T ss_pred chhhHHHHHHhh
Confidence 887777999874
No 106
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.87 E-value=8.5e-10 Score=100.77 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=54.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++++||. ++.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLL--KLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC-FVGHRSGINPYLTLR 92 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCeeEEECCCccccCHHHHHhheE-EeccccccCcCCCHH
Confidence 44554444568999999999999999998 8999999999888776511 1233 56788999988 555
Q ss_pred ccCCCC
Q 043574 86 SNCEPP 91 (530)
Q Consensus 86 eNValp 91 (530)
+|+.++
T Consensus 93 ~~~~~~ 98 (200)
T PRK13540 93 ENCLYD 98 (200)
T ss_pred HHHHHH
Confidence 998764
No 107
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.86 E-value=1.2e-09 Score=101.14 Aligned_cols=72 Identities=25% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++.+||+ +
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 91 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLL--KTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA-YVPQGREIFPRLT 91 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE-EeccCCcccCCCc
Confidence 34554444468999999999999999998 9999999999888877611 1234 66899999998 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 92 v~~~l~~~ 99 (230)
T TIGR03410 92 VEENLLTG 99 (230)
T ss_pred HHHHHHHH
Confidence 55998753
No 108
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.86 E-value=1.3e-09 Score=101.77 Aligned_cols=71 Identities=24% Similarity=0.128 Sum_probs=53.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||. ++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~-~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLF--SLLTRLYVAQEGQISVAGHDLRRAPRAALARLG-VVFQQPTLDLDLSVR 92 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCcCCCceEEEECCEEcccCChhhhhhEE-EeCCCCCCcccCcHH
Confidence 34444444468999999999999999998 9999999999777776511 1233 66799999888 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 93 ~~l~~ 97 (236)
T TIGR03864 93 QNLRY 97 (236)
T ss_pred HHHHH
Confidence 99876
No 109
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.86 E-value=1.2e-09 Score=102.00 Aligned_cols=72 Identities=26% Similarity=0.260 Sum_probs=55.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-e------------ccccCCCCCCCCCCcc-
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-A------------ESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-~------------~~Ig~mvfQ~~nLFPH- 82 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++= + +.++ +.||++.+||+
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 92 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLL--RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG-MVFQQFYLFPHL 92 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE-EEecccccCCCC
Confidence 45554444468999999999999999998 999999888988877651 1 1233 56799999998
Q ss_pred chhccCCCC
Q 043574 83 SSWSNCEPP 91 (530)
Q Consensus 83 tsveNValp 91 (530)
++.+|+.++
T Consensus 93 tv~~~l~~~ 101 (240)
T PRK09493 93 TALENVMFG 101 (240)
T ss_pred cHHHHHHhH
Confidence 555998763
No 110
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.86 E-value=1.4e-09 Score=114.16 Aligned_cols=73 Identities=23% Similarity=0.219 Sum_probs=61.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++....-.+|+.++|.||||+|||||+ +++.++.+|++|+++++ +++.|+ ++||++.||+.|..
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl--~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLI--NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA-VVFQDAGLFNRSIE 426 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHH--HHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE-EEecCcccccccHH
Confidence 56776666679999999999999999998 99999999998888886 113344 77899999999999
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 427 ~Ni~~~~ 433 (588)
T PRK13657 427 DNIRVGR 433 (588)
T ss_pred HHHhcCC
Confidence 9999964
No 111
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.86 E-value=1.4e-09 Score=100.26 Aligned_cols=71 Identities=23% Similarity=0.206 Sum_probs=54.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----e--------------ccccCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----A--------------ESIKDHHPQHN 77 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----~--------------~~Ig~mvfQ~~ 77 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++- + +.++ ++||++
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~~~q~~ 99 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLL--KSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIG-YVSQFL 99 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceE-EEeccc
Confidence 34454444468999999999999999998 999999888888887751 1 1233 668999
Q ss_pred CCCccch-hccCCC
Q 043574 78 QSFPWSS-WSNCEP 90 (530)
Q Consensus 78 nLFPHts-veNVal 90 (530)
.+||.++ .+|+.+
T Consensus 100 ~~~~~~tv~e~l~~ 113 (224)
T TIGR02324 100 RVIPRVSALEVVAE 113 (224)
T ss_pred ccCCCccHHHHHHH
Confidence 9999844 488865
No 112
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.7e-09 Score=101.71 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=54.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC---CCCceEEEE---E--------eccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK---EPHLTGYVD---F--------AESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~---~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPH 82 (530)
+|.+....-..|+.++|+||||+|||||+ +++.++.. +.+|+++++ + ++.++ ++||++++||.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~-~~~q~~~l~~~ 93 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFL--RCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG-MVFQQPNVFVK 93 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE-EEecCCccccc
Confidence 45565555568999999999999999998 89998853 566777654 1 11234 66899999997
Q ss_pred chhccCCCC
Q 043574 83 SSWSNCEPP 91 (530)
Q Consensus 83 tsveNValp 91 (530)
++.+|+.++
T Consensus 94 tv~eni~~~ 102 (246)
T PRK14269 94 SIYENISYA 102 (246)
T ss_pred cHHHHhhhH
Confidence 777999874
No 113
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.85 E-value=1.3e-09 Score=117.03 Aligned_cols=154 Identities=21% Similarity=0.215 Sum_probs=98.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|.||||||||||+ +++.++..|++|+++++ +++.|+ .+||++.||+-|..
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLl--klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~-~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLA--KLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN-YLPQEPYIFSGSIL 565 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHH--HHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE-EEecCceehhHHHH
Confidence 45555555568999999999999999998 99999999998998887 123445 77899999999999
Q ss_pred ccCCCCC--hhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHH
Q 043574 86 SNCEPPT--LSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWER 163 (530)
Q Consensus 86 eNValp~--~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~r 163 (530)
|||.++. ..+ .+++.++++.. |. .+....|. +|+||-+ ++.+ ...|++---...-.|
T Consensus 566 eNi~l~~~~~~~-~~~i~~a~~~a-------~l---~~~i~~lp--~gldt~i----~e~G----~~LSgGQrQRialAR 624 (708)
T TIGR01193 566 ENLLLGAKENVS-QDEIWAACEIA-------EI---KDDIENMP--LGYQTEL----SEEG----SSISGGQKQRIALAR 624 (708)
T ss_pred HHHhccCCCCCC-HHHHHHHHHHh-------CC---HHHHHhcc--cccCcEe----cCCC----CCCCHHHHHHHHHHH
Confidence 9999863 111 23444444321 11 22333332 4666643 2211 123444444455666
Q ss_pred HHHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHH
Q 043574 164 AVYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLV 203 (530)
Q Consensus 164 av~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~ 203 (530)
|++. +. .++=+.|-+.+|..+-...+.+++.
T Consensus 625 all~-----~p----~iliLDE~Ts~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 625 ALLT-----DS----KVLILDESTSNLDTITEKKIVNNLL 655 (708)
T ss_pred HHhh-----CC----CEEEEeCccccCCHHHHHHHHHHHH
Confidence 6665 11 3455667677777775555555554
No 114
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.7e-09 Score=100.75 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||+.++||. +
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 96 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLL--GTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA-IVPEGRRVFSRMT 96 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE-EeccCcccCCCCc
Confidence 44444444458999999999999999998 9999999998787766510 1233 56899999997 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 97 v~~~l~~~ 104 (237)
T PRK11614 97 VEENLAMG 104 (237)
T ss_pred HHHHHHHh
Confidence 55999774
No 115
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.85 E-value=1.4e-09 Score=101.36 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=55.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+||. +
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 93 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMM--DVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG-RKFQKPTVFENLT 93 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee-EeccccccCCCCC
Confidence 44554444468999999999999999999 9999998889888877611 1233 56899999999 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 94 v~~nl~~~ 101 (242)
T TIGR03411 94 VFENLELA 101 (242)
T ss_pred HHHHHHHh
Confidence 55998763
No 116
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.8e-09 Score=105.00 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=61.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCCCC--CCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQHN--QSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ~~--nLFP 81 (530)
+|++-.-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++ .+|+
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig-~v~q~~~~~~~~ 98 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLI--QHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG-LVFQYPEYQLFE 98 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhcCCCCCccEEEECCEECCCcCccHHHHhhceE-EEecCchhcccc
Confidence 45554444458999999999999999998 9999999999888877511 1234 668975 5677
Q ss_pred cchhccCCCCC------hhhHHHHHHHHHHH
Q 043574 82 WSSWSNCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 82 HtsveNValp~------~~d~r~r~e~aLE~ 106 (530)
.++.+|+.++. .++.+++++++|+.
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 129 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNI 129 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHH
Confidence 78889998732 22334455555543
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.85 E-value=1.6e-09 Score=102.06 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=54.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------------------ccccCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------------------ESIKDH 72 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------------------~~Ig~m 72 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|++.++-. +.++ +
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 91 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTIL--RILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG-M 91 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeE-E
Confidence 44554444468999999999999999998 9999999898777665410 1233 5
Q ss_pred CCCCCCCCcc-chhccCCC
Q 043574 73 HPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 73 vfQ~~nLFPH-tsveNVal 90 (530)
+||++.+||+ ++.+|+.+
T Consensus 92 v~q~~~~~~~~tv~~nl~~ 110 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTE 110 (252)
T ss_pred EecCcccCCCCcHHHHHHH
Confidence 6799999998 55599976
No 118
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.85 E-value=1.4e-09 Score=116.55 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=100.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ +++.++ .+||++.+|+.|..
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLl--klL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~-~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLL--KLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG-YVPQDPRLFYGTLR 556 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE-EECCChhhhhhhHH
Confidence 45555544568999999999999999998 99999999998988887 123445 77899999999999
Q ss_pred ccCCCCCh-hhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 86 SNCEPPTL-SNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 86 eNValp~~-~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
||+.++.. .+ ++++.++++.. .-.+.+..|. +|++|-+. +++ ...|++---...-.||
T Consensus 557 eNi~~~~~~~~-~~~i~~a~~~~----------~l~~~i~~lp--~gl~T~i~----e~G----~~LSgGQrQRlalARa 615 (694)
T TIGR03375 557 DNIALGAPYAD-DEEILRAAELA----------GVTEFVRRHP--DGLDMQIG----ERG----RSLSGGQRQAVALARA 615 (694)
T ss_pred HHHhCCCCCCC-HHHHHHHHHHc----------ChHHHHHhCc--ccccceec----CCC----CCCCHHHHHHHHHHHH
Confidence 99999652 22 34555554332 1234444443 57777542 211 1234333333334444
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
++. + -.++=+.|-+.+|..+....+.+++..+
T Consensus 616 ll~-----~----p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 616 LLR-----D----PPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred Hhc-----C----CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 442 1 1345567777788888666666666543
No 119
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.85 E-value=1.2e-09 Score=100.84 Aligned_cols=72 Identities=26% Similarity=0.291 Sum_probs=53.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC-----CCCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN-----KEPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~-----~~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++. .+++|+++++=. +.++ ++||++.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 91 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLL--RLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG-MVFQKPN 91 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEE-EEecCch
Confidence 45555554568999999999999999998 8999987 788777766411 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 92 ~~~~tv~e~l~~~ 104 (227)
T cd03260 92 PFPGSIYDNVAYG 104 (227)
T ss_pred hccccHHHHHHhH
Confidence 9944666999774
No 120
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.84 E-value=1.6e-09 Score=105.88 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE----------eccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF----------AESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl----------~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|++++|.||+|+|||||+ +++.++..+++|++.++= ++.++ ++||++.+||+ ++.
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl--~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig-~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTM--KIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG-YLPEHNPLYLDMYVR 93 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEcccChHHHHhceE-EecCCCCCCCCCcHH
Confidence 34554444468999999999999999998 999999999988777641 12345 67899999999 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
||+.+
T Consensus 94 e~l~~ 98 (301)
T TIGR03522 94 EYLQF 98 (301)
T ss_pred HHHHH
Confidence 99865
No 121
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.7e-09 Score=101.64 Aligned_cols=73 Identities=23% Similarity=0.224 Sum_probs=55.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|++.++=. +.++ ++||++.+||.++.
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 94 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLI--KLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG-MVFQQPHLFEGTVK 94 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE-EEecCchhchhhHH
Confidence 45554444468999999999999999998 9999998888777776511 1233 56799999987666
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 95 e~l~~~~ 101 (241)
T PRK14250 95 DNIEYGP 101 (241)
T ss_pred HHHhcch
Confidence 9998743
No 122
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.84 E-value=3.2e-09 Score=97.79 Aligned_cols=73 Identities=16% Similarity=0.002 Sum_probs=57.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+|+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 92 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLL--LAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA-YAAQKPWLLN 92 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhccCCCCCCeEEECCcccccccccccchhhcceEE-EEcCCCcccc
Confidence 56665555568999999999999999998 9999998888888877410 1234 6689999998
Q ss_pred cchhccCCCCC
Q 043574 82 WSSWSNCEPPT 92 (530)
Q Consensus 82 HtsveNValp~ 92 (530)
+++.+|+.++.
T Consensus 93 ~t~~~nl~~~~ 103 (218)
T cd03290 93 ATVEENITFGS 103 (218)
T ss_pred ccHHHHHhhcC
Confidence 78779998854
No 123
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.5e-09 Score=113.38 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=109.6
Q ss_pred hccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchhccCCC
Q 043574 22 AQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWSNCEP 90 (530)
Q Consensus 22 ~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsveNVal 90 (530)
...-..|+.++|.||||||||||+ +++.|+..+..|++.++ +++++. .++|++-+|+-|..||+.+
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl--~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTireNi~l 417 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLL--NLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIRENILL 417 (559)
T ss_pred eeEecCCcEEEEECCCCCCHHHHH--HHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHHHHhhc
Confidence 333457899999999999999998 99999999997887777 223344 6789999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHHHHhhc
Q 043574 91 PTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAVYALSA 170 (530)
Q Consensus 91 p~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav~a~s~ 170 (530)
...+.-++++.++|+.-. +.+-+++--||||- +++++. +.|++----..=.||++.
T Consensus 418 ~~~~~s~e~i~~al~~a~-------------l~~~v~~p~GLdt~----ige~G~----~LSgGQ~QRlaLARAll~--- 473 (559)
T COG4988 418 ARPDASDEEIIAALDQAG-------------LLEFVPKPDGLDTV----IGEGGA----GLSGGQAQRLALARALLS--- 473 (559)
T ss_pred cCCcCCHHHHHHHHHHhc-------------HHHhhcCCCcccch----hccCCC----CCCHHHHHHHHHHHHhcC---
Confidence 662222566777666421 22233334566664 343322 334454455556666654
Q ss_pred ccccccchhhhhcccCCCccChhHHHHHHHHHHHHHHHHHHHHH
Q 043574 171 RVNAKEIDGVLELRENGKRLSLEEETYLREGLVGLKLAKEVLNM 214 (530)
Q Consensus 171 ~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l~lak~v~~~ 214 (530)
. ..++=+.|-+-+|..|-.....+++..+.-.|-||-+
T Consensus 474 -----~-~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i 511 (559)
T COG4988 474 -----P-ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI 511 (559)
T ss_pred -----C-CCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEE
Confidence 2 3466677888899999888899998877665555433
No 124
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.84 E-value=1.5e-09 Score=101.55 Aligned_cols=71 Identities=27% Similarity=0.280 Sum_probs=53.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee----------------ccccCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA----------------ESIKDHHPQHN 77 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~----------------~~Ig~mvfQ~~ 77 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++ +. +.++ ++||++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~v~q~~ 94 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLL--RCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVG-FVFQNF 94 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEE-EEecCc
Confidence 45554444468999999999999999998 89999988887777654 11 1233 567999
Q ss_pred CCCcc-chhccCCC
Q 043574 78 QSFPW-SSWSNCEP 90 (530)
Q Consensus 78 nLFPH-tsveNVal 90 (530)
.+||. ++.+|+.+
T Consensus 95 ~~~~~~tv~e~l~~ 108 (250)
T PRK11264 95 NLFPHRTVLENIIE 108 (250)
T ss_pred ccCCCCCHHHHHHH
Confidence 99998 55599875
No 125
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=2.1e-09 Score=123.52 Aligned_cols=86 Identities=22% Similarity=0.240 Sum_probs=71.7
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccch
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHts 84 (530)
.||+++...-..|+.++|+|||||||||++ .|+++|-+|+.|.+.|| ++++++ .|.|++-||--|.
T Consensus 1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI--~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~-lVsQEP~LF~~TI 1080 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVI--SLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG-LVSQEPVLFNGTI 1080 (1228)
T ss_pred hhhcCCcEEecCCCEEEEECCCCCCHHHHH--HHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc-eeccCchhhcccH
Confidence 578888888889999999999999999998 99999999999999998 334455 7779999999999
Q ss_pred hccCCCCC-hhhHHHHHHHHHH
Q 043574 85 WSNCEPPT-LSNCKAQLETCLE 105 (530)
Q Consensus 85 veNValp~-~~d~r~r~e~aLE 105 (530)
.|||+++. ... ++++.+|++
T Consensus 1081 rENI~YG~~~vs-~~eIi~Aak 1101 (1228)
T KOG0055|consen 1081 RENIAYGSEEVS-EEEIIEAAK 1101 (1228)
T ss_pred HHHHhccCCCCC-HHHHHHHHH
Confidence 99999984 212 455555554
No 126
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.84 E-value=2.2e-09 Score=99.80 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=56.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||+..+|+.++.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 93 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLT--KLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG-VVLQENVLFNRSIR 93 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE-EEcCCchhccchHH
Confidence 44554444468999999999999999999 9999998899888777511 1244 66899999987777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 94 ~nl~~~~ 100 (237)
T cd03252 94 DNIALAD 100 (237)
T ss_pred HHhhccC
Confidence 9998744
No 127
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.83 E-value=1.2e-09 Score=108.52 Aligned_cols=56 Identities=30% Similarity=0.339 Sum_probs=45.3
Q ss_pred EEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhccCCCC
Q 043574 33 IHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWSNCEPP 91 (530)
Q Consensus 33 L~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsveNValp 91 (530)
|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++.+||| ++.+|+.++
T Consensus 1 l~G~nGsGKSTLl--~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~ 66 (325)
T TIGR01187 1 LLGPSGCGKTTLL--RLLAGFEQPDSGSIMLDGEDVTNVPPHLRHIN-MVFQSYALFPHMTVEENVAFG 66 (325)
T ss_pred CcCCCCCCHHHHH--HHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEecCccccCCCcHHHHHHHH
Confidence 5899999999999 9999999999887776511 2344 77899999999 555999874
No 128
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.83 E-value=3e-09 Score=97.24 Aligned_cols=72 Identities=26% Similarity=0.230 Sum_probs=57.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+.+|+++++- ++.++ ++||++.+||.++.
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~ 99 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLI--LALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT-IIPQDPTLFSGTIR 99 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHH--HHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE-EEecCCcccCccHH
Confidence 56666555578999999999999999998 999999888888877651 12344 66899999998777
Q ss_pred ccCCCC
Q 043574 86 SNCEPP 91 (530)
Q Consensus 86 eNValp 91 (530)
+|+.+.
T Consensus 100 ~~l~~~ 105 (207)
T cd03369 100 SNLDPF 105 (207)
T ss_pred HHhccc
Confidence 999763
No 129
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.4e-09 Score=105.15 Aligned_cols=72 Identities=24% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCC-CCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHN-QSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~-nLFPH-t 83 (530)
+|.+....-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++ .+|+. +
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~~t 98 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTV--RLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIG-MVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEECCcCcHHHHHhhce-EEEcChHHhccccc
Confidence 45554444468999999999999999998 9999999999888877611 1234 678986 46777 6
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 99 v~eni~~~ 106 (279)
T PRK13650 99 VEDDVAFG 106 (279)
T ss_pred HHHHHHhh
Confidence 66999874
No 130
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.83 E-value=2.3e-09 Score=111.09 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=66.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++.+|++|.++++= ++.++ .+||++.+|+.+..
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl--~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~-~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLV--NLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA-LVSQDVVLFNDTIA 423 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHH--HHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce-EEccCcccccccHH
Confidence 45554444568999999999999999999 999999999988888771 12234 77899999999999
Q ss_pred ccCCCCCh--hhHHHHHHHHHHHH
Q 043574 86 SNCEPPTL--SNCKAQLETCLESM 107 (530)
Q Consensus 86 eNValp~~--~d~r~r~e~aLE~~ 107 (530)
+||.++.. .+ .++++++|+..
T Consensus 424 ~Ni~~~~~~~~~-~~~i~~~l~~~ 446 (571)
T TIGR02203 424 NNIAYGRTEQAD-RAEIERALAAA 446 (571)
T ss_pred HHHhcCCCCCCC-HHHHHHHHHHc
Confidence 99998642 22 45666666543
No 131
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.83 E-value=3.4e-09 Score=112.87 Aligned_cols=64 Identities=23% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE------------EeccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD------------FAESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id------------l~~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
..|++-+|+|.+|+|||||. +++-++..|++|+++|+ .+..|+ |++|||.|+|. |+.|||.++.
T Consensus 28 ~~GeIHaLLGENGAGKSTLm--~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG-MVhQHF~Lv~~lTV~ENiiLg~ 104 (501)
T COG3845 28 KKGEIHALLGENGAGKSTLM--KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG-MVHQHFMLVPTLTVAENIILGL 104 (501)
T ss_pred cCCcEEEEeccCCCCHHHHH--HHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc-EEeeccccccccchhhhhhhcC
Confidence 58899999999999999997 99999999999999998 223445 99999999999 5559999955
No 132
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.83 E-value=1.4e-09 Score=106.18 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-------eccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-------AESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-------~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++ + ++.++ ++||++.+||. ++.
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIA--RMLLGMISPDRGKITVLGEPVPSRARLARVAIG-VVPQFDNLDPEFTVR 95 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECcccHHHHhhcEE-EEeccccCCcCCcHH
Confidence 44554444468999999999999999998 99999998998887764 1 12344 67899999998 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 96 e~l~~ 100 (303)
T TIGR01288 96 ENLLV 100 (303)
T ss_pred HHHHH
Confidence 99864
No 133
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.82 E-value=1.7e-09 Score=99.02 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ..+|+..++|+ ++.
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLL--RILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL-YLGHQPGIKTELTAL 92 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEEcccchHHhhhheE-EeCCccccCcCCcHH
Confidence 34555555568999999999999999998 9999998899777776511 1233 45688889998 555
Q ss_pred ccCCCC
Q 043574 86 SNCEPP 91 (530)
Q Consensus 86 eNValp 91 (530)
+|+.++
T Consensus 93 e~l~~~ 98 (204)
T PRK13538 93 ENLRFY 98 (204)
T ss_pred HHHHHH
Confidence 998764
No 134
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.82 E-value=1.7e-09 Score=99.88 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=53.5
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee------------ccccCCCCCCCCCCcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~------------~~Ig~mvfQ~~nLFPH 82 (530)
+++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++ +. +.++ ++||++.+||.
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl--~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~l~~~ 102 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLL--AILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVG-FVFQSFMLIPT 102 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHH--HHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEE-EEEcccccCCC
Confidence 4443433468999999999999999999 99999999997877764 10 1233 56799999998
Q ss_pred -chhccCCC
Q 043574 83 -SSWSNCEP 90 (530)
Q Consensus 83 -tsveNVal 90 (530)
++.+|+.+
T Consensus 103 ~tv~~~l~~ 111 (228)
T PRK10584 103 LNALENVEL 111 (228)
T ss_pred cCHHHHHHH
Confidence 56699876
No 135
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=2.1e-09 Score=106.17 Aligned_cols=72 Identities=22% Similarity=0.074 Sum_probs=55.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------------------------
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------------------------ 66 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------------------------ 66 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..++.|+++++-.
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl--~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFI--EHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHH--HHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 45554444468999999999999999999 9999999999888887521
Q ss_pred -----ccccCCCCCCC--CCCccchhccCCCC
Q 043574 67 -----ESIKDHHPQHN--QSFPWSSWSNCEPP 91 (530)
Q Consensus 67 -----~~Ig~mvfQ~~--nLFPHtsveNValp 91 (530)
+.|+ ++||++ .+|+.++.+|+.++
T Consensus 100 ~~~~~~~ig-~v~Q~~~~~l~~~tv~e~i~~~ 130 (305)
T PRK13651 100 IKEIRRRVG-VVFQFAEYQLFEQTIEKDIIFG 130 (305)
T ss_pred HHHHHhceE-EEeeCcccccccccHHHHHHhh
Confidence 1234 678964 67766777999874
No 136
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1.7e-09 Score=104.27 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=54.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCC--CCCccc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHN--QSFPWS 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~--nLFPHt 83 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++=. +.++ ++||++ .+|+.+
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~t 96 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLL--LHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG-LVFQDPDDQVFSST 96 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHH--HHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE-EEecChhhhhccCc
Confidence 56665555568999999999999999999 9999999999888776511 1234 678986 355447
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 97 v~e~l~~~ 104 (274)
T PRK13647 97 VWDDVAFG 104 (274)
T ss_pred HHHHHHhh
Confidence 77999874
No 137
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.81 E-value=2e-09 Score=98.19 Aligned_cols=71 Identities=24% Similarity=0.219 Sum_probs=51.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCC-CCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQ-SFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~n-LFPH-t 83 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++. .++. +
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~t 92 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLL--RLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG-LVFQNPDDQFFGPT 92 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEEcccCCHHHHHhhce-EEecChhhhcCCCc
Confidence 44554444458999999999999999998 9999998899787776411 1233 5578864 3555 6
Q ss_pred hhccCCC
Q 043574 84 SWSNCEP 90 (530)
Q Consensus 84 sveNVal 90 (530)
+.+|+.+
T Consensus 93 ~~~~l~~ 99 (211)
T cd03225 93 VEEEVAF 99 (211)
T ss_pred HHHHHHH
Confidence 6699876
No 138
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=2.2e-09 Score=100.33 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=54.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------------ccccCCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------------ESIKDHHPQHNQS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------------~~Ig~mvfQ~~nL 79 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~-~~~q~~~~ 93 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLL--RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVG-MVFQQYNL 93 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheE-EEecCccc
Confidence 45555554568999999999999999998 9999999888777665410 1233 56799999
Q ss_pred Ccc-chhccCCC
Q 043574 80 FPW-SSWSNCEP 90 (530)
Q Consensus 80 FPH-tsveNVal 90 (530)
||. ++.+|+.+
T Consensus 94 ~~~~tv~e~i~~ 105 (242)
T PRK11124 94 WPHLTVQQNLIE 105 (242)
T ss_pred cCCCcHHHHHHH
Confidence 998 55599864
No 139
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=2.7e-09 Score=98.75 Aligned_cols=73 Identities=21% Similarity=0.154 Sum_probs=57.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+.+|+++++-. +.++ +.||++.+|+.++.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 93 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLV--NLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG-LVSQDVFLFNDTVA 93 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE-EeCCCCeeccccHH
Confidence 45554444568999999999999999998 9999999899888776511 1244 66899999988777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 94 enl~~~~ 100 (234)
T cd03251 94 ENIAYGR 100 (234)
T ss_pred HHhhccC
Confidence 9998854
No 140
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.81 E-value=2.6e-09 Score=112.40 Aligned_cols=155 Identities=19% Similarity=0.116 Sum_probs=93.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-.+|+.++|.||||+|||||+ +++.++..|++|+++++- ++.++ ++||++.||+.+..
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl--~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 406 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLL--SLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA-VVSQTPFLFSDTVA 406 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHH--HHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE-EEccCCeeccccHH
Confidence 45555554568999999999999999998 999999999988888761 12334 67899999998888
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
||+.++..+--.++++++++- .|. .+....| -+|++|.+.+ + ....|++---..--.||+
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~-------~~l---~~~i~~l--p~gl~t~~~~----~----g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARL-------ASV---HDDILRL--PQGYDTEVGE----R----GVMLSGGQKQRISIARAL 466 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHH-------cCC---HHHHHhC--cCcccceecC----C----CCcCCHHHHHHHHHHHHH
Confidence 999986411112344444321 111 1122222 2566665422 1 112344444444555655
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLV 203 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~ 203 (530)
+. + -.++=+.|-+..|..+....+.+.+.
T Consensus 467 l~-----~----~~illlDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 467 LL-----N----AEILILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred hc-----C----CCEEEEECccccCCHHHHHHHHHHHH
Confidence 54 1 12344556566677766555555543
No 141
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=2.6e-09 Score=100.33 Aligned_cols=72 Identities=26% Similarity=0.244 Sum_probs=54.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--c----------cccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--E----------SIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--~----------~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. . .++ ++||++++||. +
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 96 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVF--NCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV-RTFQHVRLFREMT 96 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHH--HHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE-EeccCcccCCCCc
Confidence 34443433458999999999999999999 9999998899887776521 0 122 45899999998 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 97 v~enl~~~ 104 (255)
T PRK11300 97 VIENLLVA 104 (255)
T ss_pred HHHHHHHh
Confidence 55999864
No 142
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.81 E-value=3.1e-09 Score=101.23 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=54.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.++|. ++
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 93 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLL--RALSGELSPDSGEVRLNGRPLADWSPAELARRRA-VLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE-EEccCCcCCCCCCH
Confidence 45554444468999999999999999999 9999998899888777511 1233 66899888777 55
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.+|+.++
T Consensus 94 ~e~l~~~ 100 (258)
T PRK13548 94 EEVVAMG 100 (258)
T ss_pred HHHHHhh
Confidence 6998764
No 143
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=2.1e-09 Score=103.17 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=50.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCcc-chhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++.+||. ++.+|+.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl--~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~ 124 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLL--RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS-MVFQSFALLPHRTVLENVA 124 (269)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE-EEecCcccCCCCcHHHHHH
Confidence 48899999999999999998 9999999999888777410 1234 66899999998 5559987
Q ss_pred CC
Q 043574 90 PP 91 (530)
Q Consensus 90 lp 91 (530)
++
T Consensus 125 ~~ 126 (269)
T cd03294 125 FG 126 (269)
T ss_pred HH
Confidence 63
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=3e-09 Score=101.54 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=55.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||+..+||. ++
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv 102 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLL--KMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA-YLPQQLPAAEGMTV 102 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHH--HHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE-EeccCCCCCCCccH
Confidence 44554444468999999999999999998 9999998899888876521 1234 66899889998 44
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.+|+.++
T Consensus 103 ~e~l~~~ 109 (265)
T PRK10575 103 RELVAIG 109 (265)
T ss_pred HHHHHhC
Confidence 4999764
No 145
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.80 E-value=4.5e-09 Score=98.41 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=50.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc------CCCCCCCCCCcc-chhccCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK------DHHPQHNQSFPW-SSWSNCEPP 91 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig------~mvfQ~~nLFPH-tsveNValp 91 (530)
..|+.++|+||||+|||||+ +++.++..+++|+++++= +++. .++||++.+||. ++.+|+.++
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLL--NLISGLAQPTSGGVILEG-KQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECC-EECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 57899999999999999998 999999999978777641 2221 266899999998 555998663
No 146
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.80 E-value=3e-09 Score=101.96 Aligned_cols=71 Identities=25% Similarity=0.260 Sum_probs=53.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCCCCCcc-
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~nLFPH- 82 (530)
|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||+.++||.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~~~~ 99 (269)
T PRK11831 23 FDNISLTVPRGKITAIMGPSGIGKTTLL--RLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMS-MLFQSGALFTDM 99 (269)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEE-EEecccccCCCC
Confidence 4444444458999999999999999999 9999998888787776511 1233 56899999998
Q ss_pred chhccCCCC
Q 043574 83 SSWSNCEPP 91 (530)
Q Consensus 83 tsveNValp 91 (530)
++.+|+.++
T Consensus 100 tv~enl~~~ 108 (269)
T PRK11831 100 NVFDNVAYP 108 (269)
T ss_pred CHHHHHHHH
Confidence 556998763
No 147
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.6e-09 Score=105.35 Aligned_cols=72 Identities=19% Similarity=0.061 Sum_probs=56.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCC--CC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHN--QS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~--nL 79 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|++.++-. +.++ ++||++ .+
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig-~v~q~~~~~l 98 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLL--QHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVG-IVFQFPEHQL 98 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHH--HHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEE-EEeeCchhhh
Confidence 56666555579999999999999999998 9999999999888776521 1234 678975 57
Q ss_pred CccchhccCCCC
Q 043574 80 FPWSSWSNCEPP 91 (530)
Q Consensus 80 FPHtsveNValp 91 (530)
|+.++.+|+.++
T Consensus 99 ~~~tv~eni~~~ 110 (290)
T PRK13634 99 FEETVEKDICFG 110 (290)
T ss_pred hhhhHHHHHHHH
Confidence 877777999874
No 148
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.80 E-value=2.9e-09 Score=110.18 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=55.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E---------eccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F---------AESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l---------~~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++++ + ++.++ ++||++.+||. +
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl--~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~t 95 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMM--KVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG-IIHQELNLIPQLT 95 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE-EEEcchhccCCCc
Confidence 44554444458999999999999999999 99999999998887765 1 01244 67899999999 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 96 v~e~l~~~ 103 (501)
T PRK10762 96 IAENIFLG 103 (501)
T ss_pred HHHHhhhc
Confidence 55999874
No 149
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.80 E-value=9.8e-09 Score=107.17 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=99.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..|.+|+++++= ++.++ .+||++.+|+.+..
T Consensus 333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~--~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 409 (544)
T TIGR01842 333 TLRGISFRLQAGEALAIIGPSGSGKSTLA--RLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG-YLPQDVELFPGTVA 409 (544)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEehhhCCHHHHhhheE-EecCCcccccccHH
Confidence 45665555568999999999999999998 999999999988887761 12334 67899999999888
Q ss_pred ccCCCCCh-hhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 86 SNCEPPTL-SNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 86 eNValp~~-~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
||+.+... .+ .+++.++++.. .-.+.+..| .+|++|.+.+ + ....|++---...-.||
T Consensus 410 ~Ni~~~~~~~~-~~~~~~~~~~~----------~~~~~i~~l--~~gl~t~~~~----~----g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 410 ENIARFGENAD-PEKIIEAAKLA----------GVHELILRL--PDGYDTVIGP----G----GATLSGGQRQRIALARA 468 (544)
T ss_pred HHHhccCCCCC-HHHHHHHHHHh----------ChHHHHHhC--ccccccccCC----C----cCCCCHHHHHHHHHHHH
Confidence 99986431 11 23444443311 113344433 2567765322 1 11234333333344444
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGLK 206 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l~ 206 (530)
++. +. .++=+.|-+.+|..+....+.+++..++
T Consensus 469 ll~-----~~----~ililDEpts~LD~~~~~~i~~~l~~~~ 501 (544)
T TIGR01842 469 LYG-----DP----KLVVLDEPNSNLDEEGEQALANAIKALK 501 (544)
T ss_pred Hhc-----CC----CEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 433 11 3566778788888888888877776553
No 150
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=2.6e-09 Score=100.23 Aligned_cols=71 Identities=24% Similarity=0.249 Sum_probs=51.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe-----------ccccCCCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA-----------ESIKDHHPQHNQSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~-----------~~Ig~mvfQ~~nLF 80 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+ ++|+++++=. +.++ ++||++.+|
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~ 94 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLL--RVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQ-MVFQIPNPI 94 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHH--HHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEE-EEeccCccC
Confidence 34444444468999999999999999998 888988653 5666665410 1233 668998888
Q ss_pred cc-chhccCCC
Q 043574 81 PW-SSWSNCEP 90 (530)
Q Consensus 81 PH-tsveNVal 90 (530)
|. ++.+|+.+
T Consensus 95 ~~~tv~enl~~ 105 (250)
T PRK14247 95 PNLSIFENVAL 105 (250)
T ss_pred CCCcHHHHHHH
Confidence 88 55599975
No 151
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.80 E-value=3.5e-09 Score=98.25 Aligned_cols=71 Identities=18% Similarity=0.088 Sum_probs=52.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCCceEEEEEe------------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPHLTGYVDFA------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++. .+++|+++++=. ..++ ++||++.+||+
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 91 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLS--KTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF-LAFQYPEEIPG 91 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE-eeeccccccCC
Confidence 34554444468999999999999999998 8999984 577777776511 0123 56899999999
Q ss_pred chh-ccCCC
Q 043574 83 SSW-SNCEP 90 (530)
Q Consensus 83 tsv-eNVal 90 (530)
+++ +|+.+
T Consensus 92 ~t~~~~~~~ 100 (243)
T TIGR01978 92 VSNLEFLRS 100 (243)
T ss_pred cCHHHHHHH
Confidence 554 77754
No 152
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=2.8e-09 Score=100.15 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEE---Ee----------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVD---FA----------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Id---l~----------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+ ++|+++++ +. +.++ ++||++.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~~~q~~~ 95 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLL--RTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVG-MVFQYPN 95 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHH--HHHhccCCcccCCCCceEEEECCEEccccccChHHHhhcee-EEecCCc
Confidence 45555554568999999999999999998 899998765 46776664 10 1233 5679999
Q ss_pred CCcc-chhccCCC
Q 043574 79 SFPW-SSWSNCEP 90 (530)
Q Consensus 79 LFPH-tsveNVal 90 (530)
+||. ++.+|+.+
T Consensus 96 ~~~~~tv~enl~~ 108 (253)
T PRK14267 96 PFPHLTIYDNVAI 108 (253)
T ss_pred cCCCCcHHHHHHH
Confidence 9998 55599976
No 153
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.79 E-value=2.2e-09 Score=99.51 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC---CCCceEEEEE--------eccccCCCCCCCCCCcc-c
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK---EPHLTGYVDF--------AESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~---~~~Gtg~Idl--------~~~Ig~mvfQ~~nLFPH-t 83 (530)
+++++..-.-..|+.++|+||||+|||||+ +++.++.. +++|+++++= ++.++ ++||+..+||. +
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl--k~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~t 97 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLL--DAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA-YVRQDDILLPGLT 97 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHH--HHHhCccCCCCCCceEEEECCEECChHHhcccEE-EeCCCCccCcCCc
Confidence 356665555568999999999999999998 89988877 7877777641 12344 67899999998 5
Q ss_pred hhccCCC
Q 043574 84 SWSNCEP 90 (530)
Q Consensus 84 sveNVal 90 (530)
+.+|+.+
T Consensus 98 v~enl~~ 104 (226)
T cd03234 98 VRETLTY 104 (226)
T ss_pred HHHHHHH
Confidence 5599975
No 154
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.3e-09 Score=100.79 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=52.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. +++|+++++-. +.++ ++||++.
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 104 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLL--RTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVG-MVFQKPT 104 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHH--HHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceE-EEecCCc
Confidence 44554444468999999999999999998 88888854 46677666411 1233 5689999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 105 ~~~~tv~~nl~~~ 117 (260)
T PRK10744 105 PFPMSIYDNIAFG 117 (260)
T ss_pred cCcCcHHHHHhhh
Confidence 9997777999763
No 155
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=3.4e-09 Score=99.33 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=56.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++++||+ ++.+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl--~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLL--ETIAGFIKPDSGKILLNGKDITNLPPEKRDIS-YVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCcCCCceEEEECCEEcCcCChhHcCEE-EEeecCccCCCccHHH
Confidence 45554444468999999999999999998 9999999999888887611 2344 67899999998 5559
Q ss_pred cCCCC
Q 043574 87 NCEPP 91 (530)
Q Consensus 87 NValp 91 (530)
|+.++
T Consensus 91 ~l~~~ 95 (235)
T cd03299 91 NIAYG 95 (235)
T ss_pred HHHHH
Confidence 99763
No 156
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.79 E-value=3.1e-09 Score=95.42 Aligned_cols=71 Identities=23% Similarity=0.159 Sum_probs=56.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEP 90 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNVal 90 (530)
++++....-..|+.++|.||||+|||||+ +++.++..+++|+++++-.+.++ +++|++.+++.++.+|+.+
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~~~~~i~-~~~q~~~~~~~tv~~nl~~ 86 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLF--RALAGLWPWGSGRIGMPEGEDLL-FLPQRPYLPLGTLREQLIY 86 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCCceEE-EECCCCccccccHHHHhhc
Confidence 45565555568999999999999999998 99999988897777765435566 7889988776677799875
No 157
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=4.2e-09 Score=94.47 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=54.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+.+|+++++=. +.++ ++||+.++||. ++.
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLI--KIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG-YLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCEEcccchHhhhccEE-EEecCCccccCCcHH
Confidence 45555555568999999999999999998 9999998888777766411 2233 66899999998 655
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 92 ~~~~L 96 (173)
T cd03230 92 ENLKL 96 (173)
T ss_pred HHhhc
Confidence 99865
No 158
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2.9e-09 Score=100.06 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=52.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++.. +++|+++++-. +.++ ++||++.
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 97 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFL--RCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVG-MVFQKPN 97 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHH--HHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEE-EEecCCC
Confidence 55665555568999999999999999998 88888743 46666665410 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 98 ~~~~tv~enl~~~ 110 (253)
T PRK14242 98 PFPKSIFENVAYG 110 (253)
T ss_pred CCcCcHHHHHHHH
Confidence 9997666999763
No 159
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=2.4e-09 Score=104.14 Aligned_cols=72 Identities=18% Similarity=0.075 Sum_probs=56.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCC--CC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHN--QS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~--nL 79 (530)
+|++....-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++ .+
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig-~v~q~~~~~l 97 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLL--QHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG-VVFQFPESQL 97 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHH--HHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEE-EEecCcchhc
Confidence 55665555568999999999999999999 9999999999888887621 1234 668875 68
Q ss_pred CccchhccCCCC
Q 043574 80 FPWSSWSNCEPP 91 (530)
Q Consensus 80 FPHtsveNValp 91 (530)
|+.++.+|+.++
T Consensus 98 ~~~tv~~~l~~~ 109 (288)
T PRK13643 98 FEETVLKDVAFG 109 (288)
T ss_pred ccchHHHHHHhH
Confidence 877777999874
No 160
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=3.7e-09 Score=97.93 Aligned_cols=73 Identities=25% Similarity=0.223 Sum_probs=56.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+|+.++.
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl--~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 92 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTIL--RLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG-VVPQDTVLFNDTIG 92 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE-EECCCChhhcchHH
Confidence 44454444468999999999999999999 9999999999888776411 1233 66899999987777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 93 ~nl~~~~ 99 (236)
T cd03253 93 YNIRYGR 99 (236)
T ss_pred HHHhhcC
Confidence 9998854
No 161
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.78 E-value=2.6e-09 Score=102.20 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=53.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+ ++|+++++=. +.++ ++||++.
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 110 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFL--RCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVG-MVFQKPN 110 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHH--HHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceE-EEecCCC
Confidence 45555555568999999999999999998 899888653 6677766410 1123 5579999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 111 ~~~~tv~enl~~~ 123 (267)
T PRK14235 111 PFPKSIYENVAYG 123 (267)
T ss_pred CCCCcHHHHHHHH
Confidence 9998666999763
No 162
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.78 E-value=3.8e-09 Score=109.92 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=63.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++.+||+ +
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~t 102 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLM--KIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY-LVPQEPLLFPNLS 102 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE-EEeccCccCCCCc
Confidence 44554444468999999999999999999 9999999999888776511 1234 66899999999 5
Q ss_pred hhccCCCCC--hhhHHHHHHHHHHHH
Q 043574 84 SWSNCEPPT--LSNCKAQLETCLESM 107 (530)
Q Consensus 84 sveNValp~--~~d~r~r~e~aLE~~ 107 (530)
+.+|+.++. ..+.+++++++|+.+
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~l~~~ 128 (510)
T PRK15439 103 VKENILFGLPKRQASMQKMKQLLAAL 128 (510)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHc
Confidence 559998854 222345666666554
No 163
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.78 E-value=3.7e-09 Score=113.49 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=97.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..|++|+++++ +++.++ .+||+..+|+.+..
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~--~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~-~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT--KLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG-VVLQENVLFSRSIR 548 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe-EEccCCeehhhhHH
Confidence 45555555568999999999999999999 99999999998888887 112344 77899999999999
Q ss_pred ccCCCCC-hhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 86 SNCEPPT-LSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 86 eNValp~-~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
||+.++. ... .+++.++++... -.+....|. .|++|-+.+ ++ ...|++---...-.||
T Consensus 549 eNi~~~~~~~~-~~~i~~a~~~~~----------l~~~i~~lp--~gl~t~i~~----~g----~~LSgGq~qri~lARa 607 (694)
T TIGR01846 549 DNIALCNPGAP-FEHVIHAAKLAG----------AHDFISELP--QGYNTEVGE----KG----ANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHhcCCCCCC-HHHHHHHHHHcC----------hHHHHHhCc--CccCcEecC----CC----CCCCHHHHHHHHHHHH
Confidence 9999854 111 334444443221 122333332 467775422 11 1234443334444455
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGL 205 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l 205 (530)
++. +- .++=+.|-+.+|..+-...+.+++..+
T Consensus 608 ll~--------~~-~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 608 LVG--------NP-RILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred HHh--------CC-CEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 443 11 244566767777777666666665443
No 164
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.78 E-value=3.2e-09 Score=101.66 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=53.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
+|++....-..|+.++|.||||||||||+ +++.++.. +++|+++++ + ++.++ ++||++.
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~ 111 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYL--RSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIG-MVFQRPN 111 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceE-EEecCCc
Confidence 34454444468999999999999999998 88888865 466776654 1 11234 6689999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 112 ~~~~tv~eni~~~ 124 (267)
T PRK14237 112 PFAKSIYENITFA 124 (267)
T ss_pred cccccHHHHHHhH
Confidence 9998777999874
No 165
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.78 E-value=6.6e-09 Score=98.33 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------------------ccccCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------------------ESIKDH 72 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------------------~~Ig~m 72 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ +
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 96 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFL--RCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT-M 96 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceE-E
Confidence 34443333458999999999999999998 9999998888787766511 1234 6
Q ss_pred CCCCCCCCcc-chhccCCC
Q 043574 73 HPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 73 vfQ~~nLFPH-tsveNVal 90 (530)
+||++.+||+ ++.+|+.+
T Consensus 97 v~q~~~l~~~~sv~enl~~ 115 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVME 115 (257)
T ss_pred EecCcccCCCCcHHHHHHH
Confidence 6799999998 55599865
No 166
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=3.7e-09 Score=121.64 Aligned_cols=78 Identities=23% Similarity=0.258 Sum_probs=67.8
Q ss_pred hhhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCC
Q 043574 11 RPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQS 79 (530)
Q Consensus 11 rp~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nL 79 (530)
|| =..||++..-.-..|+.++|+|||||||||++ .|+.+|.+|.+|+++|| ++..|| +++|++-|
T Consensus 363 Rp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i--~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig-lV~QePvl 438 (1228)
T KOG0055|consen 363 RP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLI--QLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG-LVSQEPVL 438 (1228)
T ss_pred CC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHH--HHHHHhcCCCCceEEEcCccchhcchHHHHhhcC-eeeechhh
Confidence 55 23678877777789999999999999999999 99999999999999999 335566 88999999
Q ss_pred CccchhccCCCCC
Q 043574 80 FPWSSWSNCEPPT 92 (530)
Q Consensus 80 FPHtsveNValp~ 92 (530)
|--+..|||.++.
T Consensus 439 F~~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 439 FATTIRENIRYGK 451 (1228)
T ss_pred hcccHHHHHhcCC
Confidence 9999999999966
No 167
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.78 E-value=2.1e-09 Score=107.64 Aligned_cols=71 Identities=17% Similarity=0.043 Sum_probs=54.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-----------eccccCCCCCCC--CCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-----------AESIKDHHPQHN--QSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-----------~~~Ig~mvfQ~~--nLF 80 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+.+|+++++ + ++.|+ ++||++ .||
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLl--k~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~-~v~Q~~~~~l~ 112 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFA--RAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQ-MIFQDPLASLN 112 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHH--HHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceE-EEecCchhhcC
Confidence 45555554568999999999999999998 88999998888887775 1 12344 778986 699
Q ss_pred ccc-hhccCCC
Q 043574 81 PWS-SWSNCEP 90 (530)
Q Consensus 81 PHt-sveNVal 90 (530)
|.. +.+|+.+
T Consensus 113 p~~tv~~~i~~ 123 (331)
T PRK15079 113 PRMTIGEIIAE 123 (331)
T ss_pred CCCCHHHHHHH
Confidence 984 4499865
No 168
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.77 E-value=3.5e-09 Score=99.43 Aligned_cols=71 Identities=27% Similarity=0.292 Sum_probs=53.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-----CceEEEE---Ee----------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-----HLTGYVD---FA----------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-----~Gtg~Id---l~----------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..|+ +|+++++ +. +.++ ++||++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~ 92 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLL--RSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVG-MVFQKPN 92 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHH--HHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheE-EEecCcc
Confidence 45554444568999999999999999998 8999998876 7777764 11 1233 5679999
Q ss_pred CCccchhccCCC
Q 043574 79 SFPWSSWSNCEP 90 (530)
Q Consensus 79 LFPHtsveNVal 90 (530)
+||-++.+|+.+
T Consensus 93 ~~~~tv~e~l~~ 104 (247)
T TIGR00972 93 PFPMSIYDNIAY 104 (247)
T ss_pred cCCCCHHHHHHh
Confidence 999555599876
No 169
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.77 E-value=2.6e-09 Score=97.29 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=52.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH-tsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+..|+++++-. +.++ +.||+..+||. ++.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLL--RILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL-YLGHLPGLKPELSAL 91 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCccEEEECCEEcccchHHhhhheE-EeccCcccccCCcHH
Confidence 34444444468999999999999999998 9999998888777766411 1233 55788889987 555
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 92 ~~l~~ 96 (198)
T TIGR01189 92 ENLHF 96 (198)
T ss_pred HHHHH
Confidence 88865
No 170
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=4.7e-09 Score=98.78 Aligned_cols=72 Identities=29% Similarity=0.326 Sum_probs=53.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-----CceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-----HLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-----~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..++ +|+++++ + ++.++ ++||+++
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~ 95 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLL--RALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVG-MVFQQPN 95 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHH--HHHhcccCccccCCcccEEEECCEEccccccChHHhhceEE-EEecCCc
Confidence 45554444468999999999999999998 9999987775 3666554 1 11234 6689999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 96 ~~~~tv~enl~~~ 108 (251)
T PRK14249 96 PFPKSIFDNVAFG 108 (251)
T ss_pred cCcCcHHHHHhhH
Confidence 9998777999874
No 171
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.77 E-value=9.3e-10 Score=93.10 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccc-hhccCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWS-SWSNCEPPT 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHt-sveNValp~ 92 (530)
-..|+.++|+||||+|||||+ +++.+...+.+|.++++ .++.++ +++|+..+|+++ +.+|
T Consensus 8 i~~g~~~~i~G~nGsGKStLl--~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~tv~~~----- 79 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLL--KALAGLLPPDSGSILINGKDISDIDIEELRRRIG-YVPQDPQLFPGLTVREN----- 79 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHH--HHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEE-EEESSHCHHTTSBHHHH-----
T ss_pred EcCCCEEEEEccCCCccccce--eeeccccccccccccccccccccccccccccccc-ccccccccccccccccc-----
Confidence 457899999999999999998 89999988886666555 011222 556899999995 4488
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 043574 93 LSNCKAQLETCLESMAERG 111 (530)
Q Consensus 93 ~~d~r~r~e~aLE~~a~~~ 111 (530)
...++++++++.+....
T Consensus 80 --~~~~~~~~~l~~l~~~~ 96 (137)
T PF00005_consen 80 --ESDERIEEVLKKLGLED 96 (137)
T ss_dssp --HHHHHHHHHHHHTTHGG
T ss_pred --ccccccccccccccccc
Confidence 34567777777766554
No 172
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.77 E-value=4.4e-09 Score=105.85 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=53.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE----------eccccCCCCCCCCCCccch-hc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF----------AESIKDHHPQHNQSFPWSS-WS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl----------~~~Ig~mvfQ~~nLFPHts-ve 86 (530)
|++..-.-..|++++|+||||+|||||+ +++.++..|++|+++|+= .+.++ ++||++++||+++ .+
T Consensus 57 l~~is~~i~~Gei~gLlGpNGaGKSTLl--~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv~e 133 (340)
T PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIA--RMILGMTSPDAGKITVLGVPVPARARLARARIG-VVPQFDNLDLEFTVRE 133 (340)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHcCCCCCceEEEECCEECCcchHHHhccEE-EEeCCccCCCCCcHHH
Confidence 3333333357999999999999999998 999999999988877751 12345 6789999999954 49
Q ss_pred cCCC
Q 043574 87 NCEP 90 (530)
Q Consensus 87 NVal 90 (530)
|+.+
T Consensus 134 ~l~~ 137 (340)
T PRK13536 134 NLLV 137 (340)
T ss_pred HHHH
Confidence 9865
No 173
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.76 E-value=2.2e-09 Score=99.20 Aligned_cols=70 Identities=23% Similarity=0.196 Sum_probs=53.4
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCCCCCcc-
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~nLFPH- 82 (530)
+++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++++|++
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 97 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLL--TLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIG-YIFQAHNLLGFL 97 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheE-EEcCChhhcCCC
Confidence 4444443457999999999999999998 8999998889888776511 1234 56899999998
Q ss_pred chhccCCC
Q 043574 83 SSWSNCEP 90 (530)
Q Consensus 83 tsveNVal 90 (530)
+..+|+.+
T Consensus 98 t~~~n~~~ 105 (220)
T TIGR02982 98 TARQNVQM 105 (220)
T ss_pred CHHHHHHH
Confidence 55599876
No 174
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=3e-09 Score=102.04 Aligned_cols=72 Identities=21% Similarity=0.141 Sum_probs=53.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCC-CCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQ-SFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~n-LFPH-t 83 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++ + ++.++ ++||++. .|+. +
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~~t 100 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTIS--KILTGLLKPQSGEIKIDGITISKENLKEIRKKIG-IIFQNPDNQFIGAT 100 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEecCcCCHHHHhcceE-EEEeCHHHhcCccc
Confidence 45554444468999999999999999998 99999998998887765 1 11233 5678863 6766 6
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 101 v~enl~~~ 108 (271)
T PRK13632 101 VEDDIAFG 108 (271)
T ss_pred HHHHHHhH
Confidence 66998763
No 175
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=5.8e-09 Score=95.81 Aligned_cols=62 Identities=26% Similarity=0.205 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCcc-chhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
.. +.++|.||||+|||||+ +++.++..+++|+++++=. +.++ ++||++++||. ++.+|+.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~~~l~ 97 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLL--RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG-LVFQQYALFPHLNVRENLA 97 (214)
T ss_pred cc-eeEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE-EEecCCccCCCCCHHHHHH
Confidence 35 99999999999999998 8999998888787766410 1234 56899999998 5559987
Q ss_pred CC
Q 043574 90 PP 91 (530)
Q Consensus 90 lp 91 (530)
++
T Consensus 98 ~~ 99 (214)
T cd03297 98 FG 99 (214)
T ss_pred HH
Confidence 64
No 176
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=3.6e-09 Score=105.35 Aligned_cols=72 Identities=24% Similarity=0.120 Sum_probs=55.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee------------------------ccc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA------------------------ESI 69 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~------------------------~~I 69 (530)
+|++....-..|+.++|+||||||||||+ +++.++..+++|+++++ +. +.+
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl--~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLV--THFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 45555544468999999999999999999 99999999998888875 11 123
Q ss_pred cCCCCCCC--CCCccchhccCCCC
Q 043574 70 KDHHPQHN--QSFPWSSWSNCEPP 91 (530)
Q Consensus 70 g~mvfQ~~--nLFPHtsveNValp 91 (530)
+ ++||++ .+|+.++.+|+.++
T Consensus 119 g-~v~Q~~~~~l~~~tv~eni~~~ 141 (320)
T PRK13631 119 S-MVFQFPEYQLFKDTIEKDIMFG 141 (320)
T ss_pred E-EEEECchhccccchHHHHHHhh
Confidence 4 667876 68888777999874
No 177
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.75 E-value=5.3e-09 Score=108.32 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=55.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee---------ccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA---------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~---------~~Ig~mvfQ~~nLFPH-t 83 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++ +. +.++ ++||++.+||. +
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl--~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~t 96 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLM--KVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG-IIYQELSVIDELT 96 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE-EEeecccccCCCc
Confidence 44554444468999999999999999999 99999999998887765 10 1244 67899999999 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 97 v~e~l~~~ 104 (510)
T PRK09700 97 VLENLYIG 104 (510)
T ss_pred HHHHhhhc
Confidence 55999764
No 178
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.75 E-value=6.2e-09 Score=99.38 Aligned_cols=72 Identities=24% Similarity=0.159 Sum_probs=55.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||+..+||. ++
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv 98 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLL--RTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG-LLAQNATTPGDITV 98 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHH--HHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE-EeeccCcCCCCCcH
Confidence 45555555568999999999999999998 9999998888888776511 1234 66899999988 44
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.+|+.++
T Consensus 99 ~~~~~~~ 105 (265)
T PRK10253 99 QELVARG 105 (265)
T ss_pred HHHHHhC
Confidence 5998763
No 179
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=8.6e-09 Score=100.09 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE------------EeccccCCCCCCC--CCCccchhccCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD------------FAESIKDHHPQHN--QSFPWSSWSNCEPP 91 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id------------l~~~Ig~mvfQ~~--nLFPHtsveNValp 91 (530)
..|+.++|+||||||||||+ ++++++..|..|.++++ +++.++ ++||++ .+|--++.+.|+|+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~--~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG-~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLL--KLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG-LVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE-EEEECcccccccCcHHHHHhhc
Confidence 47899999999999999999 99999999998888765 224466 889965 77777888888883
Q ss_pred C------hhhHHHHHHHHHHHHHH
Q 043574 92 T------LSNCKAQLETCLESMAE 109 (530)
Q Consensus 92 ~------~~d~r~r~e~aLE~~a~ 109 (530)
- .+++++|++++|+.+..
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl 128 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGL 128 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCc
Confidence 3 55678899998886543
No 180
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.75 E-value=4.3e-09 Score=98.76 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=55.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+.+|+++++-. +.++ ++||++.+||+ +..+
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLL--RIIAGLEQPDSGRIRLNGQDATRVHARDRKIG-FVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEEcCcCChhhcCEE-EEecChhhccCCcHHH
Confidence 56665544568999999999999999998 8999998888787776511 1233 66799999998 5569
Q ss_pred cCCC
Q 043574 87 NCEP 90 (530)
Q Consensus 87 NVal 90 (530)
|+.+
T Consensus 92 nl~~ 95 (237)
T TIGR00968 92 NIAF 95 (237)
T ss_pred HHHh
Confidence 9976
No 181
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=3.3e-09 Score=102.67 Aligned_cols=72 Identities=19% Similarity=0.083 Sum_probs=52.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCC---ceEEEEEe-----------ccccCCCCCCCC-CCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPH---LTGYVDFA-----------ESIKDHHPQHNQ-SFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~---Gtg~Idl~-----------~~Ig~mvfQ~~n-LFP 81 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++ |+++++-. +.++ ++||+++ +|+
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl--~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig-~v~q~~~~~~~ 98 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTIS--KLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG-IVFQNPDNQFV 98 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHH--HHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE-EEEECHHHhhc
Confidence 45555444468999999999999999998 99999988776 66665411 1233 5678874 666
Q ss_pred c-chhccCCCC
Q 043574 82 W-SSWSNCEPP 91 (530)
Q Consensus 82 H-tsveNValp 91 (530)
+ ++.+|+.++
T Consensus 99 ~~tv~enl~~~ 109 (282)
T PRK13640 99 GATVGDDVAFG 109 (282)
T ss_pred cCCHHHHHHhh
Confidence 6 666999864
No 182
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=3.9e-09 Score=100.96 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=52.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCC-CCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQ-SFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~n-LFPH-t 83 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++. +||. +
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl--~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~ 100 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIA--KLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG-IVFQNPDNQFVGSI 100 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEECCcCCHHHHHhhee-EEEeChHHhccccc
Confidence 44554444468999999999999999998 9999998899888776511 1233 5678864 6777 4
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 101 v~~~~~~~ 108 (269)
T PRK13648 101 VKYDVAFG 108 (269)
T ss_pred HHHHHHhh
Confidence 45888764
No 183
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=3.9e-09 Score=99.97 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=52.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+ ++|+++++-. +.++ ++||+.+
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 95 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVL--RTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG-MVFQRPN 95 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceE-EEccccc
Confidence 45554444468999999999999999998 999998653 5676665411 1233 6679999
Q ss_pred CCcc-chhccCCC
Q 043574 79 SFPW-SSWSNCEP 90 (530)
Q Consensus 79 LFPH-tsveNVal 90 (530)
+||. ++.+|+.+
T Consensus 96 ~~~~~tv~~nl~~ 108 (258)
T PRK14241 96 PFPTMSIRDNVVA 108 (258)
T ss_pred cCCCCcHHHHHHH
Confidence 9998 55599875
No 184
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=4.5e-09 Score=98.90 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=53.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++.. ++.|+++++-. +.++ ++||+++
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl--~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 96 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFL--RCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVG-MVFQKPN 96 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEE-EEecCcc
Confidence 45565555568999999999999999998 89998864 35677666411 1233 6689999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 97 ~~~~tv~~ni~~~ 109 (251)
T PRK14244 97 PFPKSIYDNVAYG 109 (251)
T ss_pred cccCCHHHHHHHH
Confidence 9998666998763
No 185
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.74 E-value=6.2e-09 Score=101.90 Aligned_cols=70 Identities=24% Similarity=0.196 Sum_probs=55.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. ++|+++++- ++.++ ++||++.+||.++.
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl--~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~-~v~q~~~lf~~tv~ 94 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLL--SAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG-VIPQKVFIFSGTFR 94 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHH--HHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE-EECCCcccchhhHH
Confidence 56666666679999999999999999998 88888876 678877761 12344 77899999999888
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+..
T Consensus 95 ~nl~~ 99 (275)
T cd03289 95 KNLDP 99 (275)
T ss_pred HHhhh
Confidence 99964
No 186
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=7.3e-09 Score=97.57 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC--C---CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK--E---PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~--~---~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.. + ++|+++++-. +.++ ++||+++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~-~~~q~~~ 95 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVL--RSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVG-MVFQKPN 95 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHH--HHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEE-EEecCCC
Confidence 45555544568999999999999999998 88888854 2 4676665411 1133 5679999
Q ss_pred CCcc-chhccCCC
Q 043574 79 SFPW-SSWSNCEP 90 (530)
Q Consensus 79 LFPH-tsveNVal 90 (530)
+||. ++.+|+.+
T Consensus 96 ~~~~~tv~enl~~ 108 (252)
T PRK14256 96 PFPAMSIYDNVIA 108 (252)
T ss_pred CCCcCcHHHHHHh
Confidence 9997 55599976
No 187
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=6.2e-09 Score=98.17 Aligned_cols=72 Identities=24% Similarity=0.184 Sum_probs=53.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|.||||||||||+ +++.++..+ ++|+++++-. +.++ ++||++.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 98 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFL--RTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIG-MVFQTPN 98 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHH--HHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceE-EEeeccc
Confidence 55665555568999999999999999998 888888765 3677666410 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 99 ~~~~tv~eni~~~ 111 (254)
T PRK14273 99 PFLMSIYDNISYG 111 (254)
T ss_pred cccCcHHHHHHHH
Confidence 9975666999874
No 188
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.74 E-value=4.9e-09 Score=98.49 Aligned_cols=71 Identities=20% Similarity=0.064 Sum_probs=52.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCC-CCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHP-QHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvf-Q~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..|++|+++++=. +.++ ++| |++.+||. ++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl--~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~~~~tv 112 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTL--KILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG-VVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCcCCCceEEEECCEEccccchhhcccEE-EEcCCccccCCCCcH
Confidence 45555544568999999999999999999 9999998899887776411 1233 455 56778887 44
Q ss_pred hccCCC
Q 043574 85 WSNCEP 90 (530)
Q Consensus 85 veNVal 90 (530)
.+|+.+
T Consensus 113 ~e~l~~ 118 (236)
T cd03267 113 IDSFYL 118 (236)
T ss_pred HHHHHH
Confidence 488754
No 189
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.74 E-value=5.5e-09 Score=108.01 Aligned_cols=72 Identities=24% Similarity=0.143 Sum_probs=56.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+.+|+++++= .+.++ .++|+..+++..++
T Consensus 18 vL~~vs~~i~~Geiv~liGpNGaGKSTLL--k~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig-~v~q~~~l~~~~tv 94 (402)
T PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLL--RAINGTLTPTAGTVLVAGDDVEALSARAASRRVA-SVPQDTSLSFEFDV 94 (402)
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHH--HHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE-EEccCCCCCCCCCH
Confidence 45555544568999999999999999999 999999999988887761 12244 66899999888444
Q ss_pred -ccCCCC
Q 043574 86 -SNCEPP 91 (530)
Q Consensus 86 -eNValp 91 (530)
+|+.++
T Consensus 95 ~e~v~~~ 101 (402)
T PRK09536 95 RQVVEMG 101 (402)
T ss_pred HHHHHhc
Confidence 999774
No 190
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.74 E-value=5.5e-09 Score=93.75 Aligned_cols=69 Identities=30% Similarity=0.318 Sum_probs=53.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
++.+..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++- ++.++ ++||++.+||.++.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 93 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLA--RLILGLLRPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIA 93 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHH--HHHHhccCCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHH
Confidence 34444444468999999999999999998 999999999988877651 12233 66799999998777
Q ss_pred ccC
Q 043574 86 SNC 88 (530)
Q Consensus 86 eNV 88 (530)
+|+
T Consensus 94 ~~l 96 (173)
T cd03246 94 ENI 96 (173)
T ss_pred HHC
Confidence 997
No 191
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.73 E-value=4.5e-09 Score=109.09 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=60.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCCceEEEEE-----------------------------
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPHLTGYVDF----------------------------- 65 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~Gtg~Idl----------------------------- 65 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++. .+++|+++++-
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl--~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLM--HVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHH--HHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 44454444468999999999999999998 9999985 67878877640
Q ss_pred ---------------eccccCCCCCC-CCCCcc-chhccCCCCC------hhhHHHHHHHHHHHH
Q 043574 66 ---------------AESIKDHHPQH-NQSFPW-SSWSNCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 66 ---------------~~~Ig~mvfQ~-~nLFPH-tsveNValp~------~~d~r~r~e~aLE~~ 107 (530)
++.++ ++||+ +++||+ ++.+|+.++. ..+.++++.++|+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIA-IMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156 (520)
T ss_pred chhhhccCHHHHHHhhhcEE-EEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 01234 66796 789998 5569997632 223345566666554
No 192
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=6.9e-09 Score=99.66 Aligned_cols=71 Identities=24% Similarity=0.248 Sum_probs=52.0
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEE---Ee----------ccccCCCCCCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVD---FA----------ESIKDHHPQHNQS 79 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Id---l~----------~~Ig~mvfQ~~nL 79 (530)
|++..-.-..|+.++|+||||||||||+ +++.++.. +++|+++++ +. +.++ ++||++.+
T Consensus 29 l~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~l 105 (269)
T PRK14259 29 VKNVFCDIPRGKVTALIGPSGCGKSTVL--RSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIG-MVFQQPNP 105 (269)
T ss_pred EcceEEEEcCCCEEEEECCCCCCHHHHH--HHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceE-EEccCCcc
Confidence 3333333358999999999999999998 88988865 466776654 10 1234 66899999
Q ss_pred CccchhccCCCC
Q 043574 80 FPWSSWSNCEPP 91 (530)
Q Consensus 80 FPHtsveNValp 91 (530)
||.++.+|+.+.
T Consensus 106 ~~~tv~enl~~~ 117 (269)
T PRK14259 106 FPKSIYENIAFG 117 (269)
T ss_pred chhhHHHHHhhh
Confidence 998666999874
No 193
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.73 E-value=6.4e-09 Score=97.64 Aligned_cols=72 Identities=24% Similarity=0.272 Sum_probs=52.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC--C---CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK--E---PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~--~---~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++.. + ++|+++++=. +.++ ++||++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 94 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFL--RTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVG-MVFQQPN 94 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHH--HHHhccccccCCCCCceEEEECCEEccccccchHHHhccEE-EEecCCc
Confidence 45555554568999999999999999998 99998754 2 4677766510 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.+.
T Consensus 95 ~~~~t~~~ni~~~ 107 (250)
T PRK14240 95 PFPMSIYDNVAYG 107 (250)
T ss_pred cCcccHHHHHHHH
Confidence 9996666999763
No 194
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.73 E-value=6.8e-09 Score=109.93 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=93.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.+|++|+++++- ++.++ ++||++.+|+.+..
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~--~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLI--NLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA-TVFQDAGLFNRSIR 426 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHH--HHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE-EEccCCccCcccHH
Confidence 45554444468999999999999999998 999999999988888761 12234 67899999999888
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
||+.++..+.-.++++++++. .|. .+....| -.|++|.+.+ + ....|++---...-.||+
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~-------~~~---~~~i~~l--~~g~~t~~~~----~----~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKA-------AAA---HDFILKR--SNGYDTLVGE----R----GNRLSGGERQRLAIARAI 486 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHH-------hCc---HHHHHhc--cccccchhcC----C----CCCCCHHHHHHHHHHHHH
Confidence 999985411012334444331 111 1111111 2355554321 1 112344444445556666
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLV 203 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~ 203 (530)
+. + -.++=+.|-+.+|..+....+.+++.
T Consensus 487 l~-----~----p~ililDEpts~LD~~~~~~i~~~l~ 515 (585)
T TIGR01192 487 LK-----N----APILVLDEATSALDVETEARVKNAID 515 (585)
T ss_pred hc-----C----CCEEEEECCccCCCHHHHHHHHHHHH
Confidence 54 1 12455566666777776666665553
No 195
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.73 E-value=7.8e-09 Score=106.59 Aligned_cols=72 Identities=19% Similarity=0.093 Sum_probs=55.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE------------eccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF------------AESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl------------~~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++= ++.++ ++||++.+||. +
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~t 89 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLL--KCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS-MVHQELNLVLQRS 89 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE-EEecccccccCCC
Confidence 44554444468999999999999999999 999999989977777641 01244 66899999998 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 90 v~~~l~~~ 97 (491)
T PRK10982 90 VMDNMWLG 97 (491)
T ss_pred HHHHhhcc
Confidence 55999864
No 196
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=4.4e-09 Score=100.92 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=53.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCC--CC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHN--QS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~--nL 79 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.|+ ++||++ .+
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 98 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIM--QLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVG-LVFQFPESQL 98 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEccccccccCHHHHHhheE-EEeeChhhhh
Confidence 45554444468999999999999999999 9999999999888776511 1233 567875 56
Q ss_pred CccchhccCCC
Q 043574 80 FPWSSWSNCEP 90 (530)
Q Consensus 80 FPHtsveNVal 90 (530)
|+.++.+|+.+
T Consensus 99 ~~~tv~e~l~~ 109 (280)
T PRK13649 99 FEETVLKDVAF 109 (280)
T ss_pred ccccHHHHHHH
Confidence 77677799876
No 197
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=7.6e-09 Score=97.38 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=53.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+ ++|+++++-. +.++ ++||+..
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~~~q~~~ 95 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFL--RCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVG-MVFQKPN 95 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHH--HHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheE-EEecCCC
Confidence 45555554568999999999999999998 999998654 5676666411 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 96 ~~~~tv~enl~~~ 108 (251)
T PRK14270 96 PFPMSIYDNVAYG 108 (251)
T ss_pred cCCCcHHHHHHhH
Confidence 9996666999763
No 198
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.8e-09 Score=113.50 Aligned_cols=73 Identities=25% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
||++..-.-+.|+.++|+||||+||||+. .|+.+|-+|.+|++-+| +++.|+ .+-|++-||--++.
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTia--sLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig-~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIA--SLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG-LVGQEPVLFSGSIR 559 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHH--HHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee-eeeccceeecccHH
Confidence 56666666678999999999999999998 99999999998888877 224444 56699999999999
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
|||+++.
T Consensus 560 eNI~YG~ 566 (716)
T KOG0058|consen 560 ENIAYGL 566 (716)
T ss_pred HHHhcCC
Confidence 9999965
No 199
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=5.8e-09 Score=99.77 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=53.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE----Ee-------------ccccCCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD----FA-------------ESIKDHHPQHNQS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id----l~-------------~~Ig~mvfQ~~nL 79 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|++.++ ++ +.++ +.||++.+
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~-~~~q~~~~ 101 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLL--KVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG-MVFQQPNP 101 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceE-EEccCCcc
Confidence 35555554568999999999999999998 99999988887654332 21 1233 56799999
Q ss_pred Ccc-chhccCCCC
Q 043574 80 FPW-SSWSNCEPP 91 (530)
Q Consensus 80 FPH-tsveNValp 91 (530)
||+ ++.+|+.++
T Consensus 102 ~~~~tv~~nl~~~ 114 (257)
T PRK14246 102 FPHLSIYDNIAYP 114 (257)
T ss_pred CCCCcHHHHHHHH
Confidence 998 555999863
No 200
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.72 E-value=8.5e-09 Score=97.87 Aligned_cols=71 Identities=20% Similarity=0.071 Sum_probs=52.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCC---ceEEEEEecc-----------------ccCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPH---LTGYVDFAES-----------------IKDHHPQH 76 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~---Gtg~Idl~~~-----------------Ig~mvfQ~ 76 (530)
++++....-..|+.++|+||||+|||||+ +++.++..++. |+++++= ++ ++ ++||+
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~p~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~~i~-~~~q~ 94 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLL--RHLSGLITGDKSAGSHIELLG-RTVQREGRLARDIRKSRANTG-YIFQQ 94 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHH--HHHhccCCCCCCCceEEEECC-EecccccccchhHHHHHhheE-EEccc
Confidence 44554444468999999999999999998 89999877653 5555431 12 23 56899
Q ss_pred CCCCcc-chhccCCCC
Q 043574 77 NQSFPW-SSWSNCEPP 91 (530)
Q Consensus 77 ~nLFPH-tsveNValp 91 (530)
.++||. ++.+|+.++
T Consensus 95 ~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 95 FNLVNRLSVLENVLIG 110 (262)
T ss_pred cccccCCcHHHHHHhh
Confidence 999998 555999764
No 201
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.72 E-value=6.6e-09 Score=96.66 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ +.||++.+|+.++.
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 94 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVV--SLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG-LVSQEPVLFDGTIA 94 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHH--HHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE-EECCchhhhhhhHH
Confidence 34444433458999999999999999998 9999998899888776511 1234 66899999987777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 95 e~l~~~~ 101 (238)
T cd03249 95 ENIRYGK 101 (238)
T ss_pred HHhhccC
Confidence 9998754
No 202
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.72 E-value=5.9e-09 Score=108.21 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=53.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-------E-----------eccccCCCCCCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-------F-----------AESIKDHHPQHNQS 79 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-------l-----------~~~Ig~mvfQ~~nL 79 (530)
|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++ + ++.++ ++||++++
T Consensus 300 l~~is~~i~~Ge~~~l~G~NGsGKSTLl--~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~-~v~q~~~l 376 (520)
T TIGR03269 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLS--KIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIG-ILHQEYDL 376 (520)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEE-EEccCccc
Confidence 4443333458999999999999999998 99999998998888874 0 01244 67899999
Q ss_pred Ccc-chhccCCC
Q 043574 80 FPW-SSWSNCEP 90 (530)
Q Consensus 80 FPH-tsveNVal 90 (530)
||+ ++.+|+.+
T Consensus 377 ~~~~tv~e~l~~ 388 (520)
T TIGR03269 377 YPHRTVLDNLTE 388 (520)
T ss_pred CCCCcHHHHHHH
Confidence 998 55599865
No 203
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.72 E-value=4.4e-09 Score=97.13 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=57.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+.+|+++++- .+.++ ++||+..+|+.++.
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~ 105 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVV--ALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS-LVGQEPVLFARSLQ 105 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEE-EEecccHHHhhhHH
Confidence 56665555568999999999999999998 999999888988777651 12234 56799999988777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 106 ~nl~~~~ 112 (226)
T cd03248 106 DNIAYGL 112 (226)
T ss_pred HHhcccc
Confidence 9998743
No 204
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=5.3e-09 Score=99.28 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=53.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEE---Ee----------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVD---FA----------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Id---l~----------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+ ++|+++++ +. +.++ ++||++.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 103 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFI--RCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVG-MVFQKPN 103 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEE-EEecCCc
Confidence 45555544568999999999999999998 889988664 67777664 10 1233 6679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 104 ~~~~tv~enl~~~ 116 (258)
T PRK14268 104 PFPMSIYDNVAYG 116 (258)
T ss_pred cCcccHHHHHHHH
Confidence 9996666999763
No 205
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=4.5e-09 Score=96.88 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC---CCCceEEEEEe----------ccccCCCCCCCCCCcc-
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK---EPHLTGYVDFA----------ESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~---~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPH- 82 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.. +++|+++++-. +.++ ++||+..+||+
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 98 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLL--KALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEII-YVSEEDVHFPTL 98 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHH--HHhcccCCCCCCcceEEEECCEECccchhhhcceEE-EEecccccCCCC
Confidence 55565555568999999999999999998 99999977 78777776411 1233 56799999998
Q ss_pred chhccCCC
Q 043574 83 SSWSNCEP 90 (530)
Q Consensus 83 tsveNVal 90 (530)
++.+|+.+
T Consensus 99 tv~~~l~~ 106 (202)
T cd03233 99 TVRETLDF 106 (202)
T ss_pred cHHHHHhh
Confidence 55599854
No 206
>PLN03232 ABC transporter C family member; Provisional
Probab=98.72 E-value=7.3e-09 Score=121.05 Aligned_cols=86 Identities=21% Similarity=0.218 Sum_probs=67.3
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccch
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHts 84 (530)
.||++..-.-..|+.++|+||||||||||+ +++-++.++++|++.|| +++.|+ ++||++.||+-|.
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~--~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~-iVpQdp~LF~gTI 1326 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSML--NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS-IIPQSPVLFSGTV 1326 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE-EECCCCeeeCccH
Confidence 466776666678999999999999999998 99999999999999888 223345 7799999999998
Q ss_pred hccCCCCChhhHHHHHHHHHH
Q 043574 85 WSNCEPPTLSNCKAQLETCLE 105 (530)
Q Consensus 85 veNValp~~~d~r~r~e~aLE 105 (530)
.+|+.+..... .+++.++|+
T Consensus 1327 r~NL~~~~~~s-deei~~al~ 1346 (1495)
T PLN03232 1327 RFNIDPFSEHN-DADLWEALE 1346 (1495)
T ss_pred HHHcCCCCCCC-HHHHHHHHH
Confidence 89999854222 334555554
No 207
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=6.9e-09 Score=100.19 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=60.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCC--CCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQ--SFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~n--LFPH 82 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++. +|+.
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~~ 101 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIA--KHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAG-MVFQNPDNQIVAT 101 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEeccccccHHHHhhheE-EEecChhhhhccc
Confidence 55555554568999999999999999999 9999999999888877611 1233 6678764 5555
Q ss_pred chhccCCCCC------hhhHHHHHHHHHHH
Q 043574 83 SSWSNCEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 83 tsveNValp~------~~d~r~r~e~aLE~ 106 (530)
++.+|+.++. ..+.+++++++++.
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 131 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKK 131 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHH
Confidence 6669998742 22234455555554
No 208
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=7.5e-09 Score=107.30 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=54.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC--CCceEEEE---E---------eccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE--PHLTGYVD---F---------AESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~--~~Gtg~Id---l---------~~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+ ++|+++++ + ++.++ ++||++.+||+
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 96 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLM--KVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA-IIHQELALVKE 96 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHH--HHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeE-EEEeccccCCC
Confidence 45554444468999999999999999998 999998775 67777764 1 02244 67899999999
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 97 ~tv~e~l~~~ 106 (506)
T PRK13549 97 LSVLENIFLG 106 (506)
T ss_pred CcHHHHhhhc
Confidence 555999875
No 209
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=6.9e-09 Score=100.51 Aligned_cols=72 Identities=21% Similarity=0.078 Sum_probs=53.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCC-CCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHN-QSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~-nLFPH-t 83 (530)
++++..-.-..|++++|+||||+|||||+ +++.++..+++|+++++=. +.|+ ++||++ .+|+. +
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl--~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~~~q~~~~~~~~~t 98 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLA--KLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG-MVFQNPDNQFVGAT 98 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE-EEEeCHHHhccccc
Confidence 45554444468999999999999999998 9999999999887776511 1233 668986 36665 6
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 99 v~enl~~~ 106 (279)
T PRK13635 99 VQDDVAFG 106 (279)
T ss_pred HHHHHhhh
Confidence 66999874
No 210
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=8e-09 Score=107.68 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=57.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++-...++ ++||++.+|+. ++.+|+.++.
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl--~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~ 89 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFM--KILGGDLEPSAGNVSLDPNERLG-KLRQDQFAFEEFTVLDTVIMGH 89 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEecCCCEEE-EEeccCCcCCCCcHHHHHHHhh
Confidence 45555544568999999999999999999 99999988887777765334566 78999999998 5559987653
No 211
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=6.6e-09 Score=100.66 Aligned_cols=71 Identities=25% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCCCC--CCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQHN--QSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ~~--nLFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. ..++ ++||++ .+|+
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl--~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig-~v~q~~~~~~~~ 97 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLF--QNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG-MVFQDPDNQLFS 97 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE-EEecCcchhhcc
Confidence 45554444468999999999999999999 9999999999888877611 1234 667876 4566
Q ss_pred cchhccCCC
Q 043574 82 WSSWSNCEP 90 (530)
Q Consensus 82 HtsveNVal 90 (530)
.++.+|+.+
T Consensus 98 ~tv~e~l~~ 106 (283)
T PRK13636 98 ASVYQDVSF 106 (283)
T ss_pred ccHHHHHHh
Confidence 677799976
No 212
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=8.9e-09 Score=102.86 Aligned_cols=71 Identities=23% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE--------------eccccCCCCCCC--CCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF--------------AESIKDHHPQHN--QSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl--------------~~~Ig~mvfQ~~--nLF 80 (530)
++++..-.-..|+.++|+||||||||||+ +++.++..+.+|+++++= ++.|+ ++||++ +|+
T Consensus 30 ~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl--~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~-~v~Q~~~~~l~ 106 (327)
T PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLA--RLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ-IVFQNPYGSLN 106 (327)
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHH--HHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEE-EEEcCchhhcC
Confidence 44554444468999999999999999998 899999888877777651 12344 778986 689
Q ss_pred ccchh-ccCCC
Q 043574 81 PWSSW-SNCEP 90 (530)
Q Consensus 81 PHtsv-eNVal 90 (530)
|..++ +|+..
T Consensus 107 p~~~v~~~l~~ 117 (327)
T PRK11308 107 PRKKVGQILEE 117 (327)
T ss_pred CccCHHHHHHH
Confidence 98555 77653
No 213
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.69 E-value=9.7e-09 Score=120.21 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=97.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC----------------------------------------
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE---------------------------------------- 56 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~---------------------------------------- 56 (530)
||++..-.-..|+.++|+||||||||||+ +++.+|.+|
T Consensus 1183 vL~~lsl~i~~G~~vAIVG~SGsGKSTl~--~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVM--SLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred cccCeeEEEcCCCEEEEECCCCCCHHHHH--HHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 66666666678999999999999999998 999999887
Q ss_pred --------------CCceEEEE-----------EeccccCCCCCCCCCCccchhccCCCCChhhHHHHHHHHHHHHHHHh
Q 043574 57 --------------PHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWSNCEPPTLSNCKAQLETCLESMAERG 111 (530)
Q Consensus 57 --------------~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsveNValp~~~d~r~r~e~aLE~~a~~~ 111 (530)
++|+++|| +++.|+ +++|++-||+-|..|||.++..+--.+.++++++--
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~-~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A---- 1335 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS-IVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA---- 1335 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc-EeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHc----
Confidence 47778776 223445 789999999999999999964111123455544321
Q ss_pred HHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHHHHhhcccccccchhhhhcccCCCccC
Q 043574 112 IKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAVYALSARVNAKEIDGVLELRENGKRLS 191 (530)
Q Consensus 112 v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav~a~s~~~~~~e~~~~~~~~ek~~~~s 191 (530)
| -.+....| -.|+||-+ ++++ ..+|++---..--.||++- + -.+|=+.|-+.+|.
T Consensus 1336 ---~---l~~fI~~L--P~GydT~V----Ge~G----~~LSGGQkQRIaIARALlr-----~----p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1336 ---A---IDEFIESL--PNKYDTNV----GPYG----KSLSGGQKQRIAIARALLR-----E----PKILLLDEATSSLD 1390 (1466)
T ss_pred ---C---CHHHHHhC--ccccCCcc----CCCC----CcCCHHHHHHHHHHHHHhc-----C----CCEEEEeCcccccC
Confidence 1 11222222 23555532 2221 1234343334455666654 1 13566667667777
Q ss_pred hhHHHHHHHHHHHH
Q 043574 192 LEEETYLREGLVGL 205 (530)
Q Consensus 192 ~ee~~y~~e~~~~l 205 (530)
.|-..-.++++..+
T Consensus 1391 ~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1391 SNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHHHHHHHHH
Confidence 77555566666554
No 214
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.69 E-value=8.5e-09 Score=106.78 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=56.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE------------eccccCCCCCCCCCCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF------------AESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl------------~~~Ig~mvfQ~~nLFPH-t 83 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++= ++.++ ++||++.+||. +
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~t 95 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLL--KILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA-IIYQELHLVPEMT 95 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE-EEEechhccCCCC
Confidence 44554444468999999999999999999 999999999988877641 12244 66899999998 5
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 96 v~~~l~~~ 103 (501)
T PRK11288 96 VAENLYLG 103 (501)
T ss_pred HHHHHHhc
Confidence 55999874
No 215
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=8.8e-09 Score=98.26 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=52.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
+|++....-..|+.++|+||||+|||||+ +++.++.. +++|+++++ + .+.++ ++||++.
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 112 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFL--RSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIG-MVFQKPN 112 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHH--HHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEE-EEecCCc
Confidence 44554444468999999999999999998 88888643 566777664 1 01234 6679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 113 ~~~~tv~enl~~~ 125 (268)
T PRK14248 113 PFPKSIYNNITHA 125 (268)
T ss_pred cCcccHHHHHHHH
Confidence 9998777999764
No 216
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=8.5e-09 Score=97.71 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=51.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC--C---CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK--E---PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~--~---~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. + ++|+++++-. +.++ ++||+..
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~ 103 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFI--KTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIG-MVFQKGN 103 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceE-EEecCCc
Confidence 34554444458999999999999999998 88888765 2 3566665410 1233 6689999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.+.
T Consensus 104 ~~~~tv~enl~~~ 116 (259)
T PRK14274 104 PFPQSIFDNVAYG 116 (259)
T ss_pred ccccCHHHHHHhH
Confidence 9998777999763
No 217
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.2e-08 Score=96.59 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=54.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||+..+||. ++
T Consensus 17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 93 (255)
T PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLL--KCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA-LLPQHHLTPEGITV 93 (255)
T ss_pred EEeeeeeEEcCCcEEEEECCCCCCHHHHH--HHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE-EecccCCCCCCccH
Confidence 34443333458999999999999999998 9999998888887776511 1234 66899899988 55
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.+|+.++
T Consensus 94 ~~~i~~~ 100 (255)
T PRK11231 94 RELVAYG 100 (255)
T ss_pred HHHHHhc
Confidence 6998764
No 218
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.69 E-value=7.1e-09 Score=110.91 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=64.9
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-CceEEEEEe-c---------cccCCCCCCCCCCcc-c
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-HLTGYVDFA-E---------SIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-~Gtg~Idl~-~---------~Ig~mvfQ~~nLFPH-t 83 (530)
.+|++..-.-..|+.++|.||||+|||||+ +++.+...+. ..+|.|.++ + .++ .++|+..+||. |
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL--~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-yv~Q~~~~~~~lT 115 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLM--NALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA-YVQQDDLFIPTLT 115 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHH--HHHhCCCCCCCcceeEEEECCEECCHHHHhhhce-eeccccccCccCc
Confidence 467777777789999999999999999998 7777765543 224444443 2 234 77899999999 5
Q ss_pred hhccCCCC------C---hhhHHHHHHHHHHHHH
Q 043574 84 SWSNCEPP------T---LSNCKAQLETCLESMA 108 (530)
Q Consensus 84 sveNValp------~---~~d~r~r~e~aLE~~a 108 (530)
+.||+.++ . .++.++++++.|+.|-
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg 149 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG 149 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC
Confidence 55999762 1 3444667888888764
No 219
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.69 E-value=6e-09 Score=109.72 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=59.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++-...++ ++||++.+||+ ++.+|+.++.
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLl--k~i~G~~~p~~G~i~~~~~~~i~-~v~Q~~~~~~~~tv~e~l~~~~ 95 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLL--RIMAGVDKEFEGEARPAPGIKVG-YLPQEPQLDPEKTVRENVEEGV 95 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEecCCCEEE-EEecCCCCCCCCcHHHHHHHhh
Confidence 45555555568999999999999999999 99999988887777765335567 88999999999 5559997753
No 220
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.69 E-value=7e-09 Score=99.02 Aligned_cols=71 Identities=24% Similarity=0.170 Sum_probs=52.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCC--CCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHN--QSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~--nLF 80 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++ .++
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 102 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLA--RLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQ-LVFQDSPSAVN 102 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceE-EEecChhhhcC
Confidence 45555555568999999999999999998 9999999999888776511 1234 567875 466
Q ss_pred cc-chhccCCC
Q 043574 81 PW-SSWSNCEP 90 (530)
Q Consensus 81 PH-tsveNVal 90 (530)
|. ++.+|+.+
T Consensus 103 ~~~tv~~~l~~ 113 (265)
T TIGR02769 103 PRMTVRQIIGE 113 (265)
T ss_pred CCCCHHHHHHH
Confidence 66 44488754
No 221
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.3e-08 Score=96.06 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=52.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC--C---CCceEEEE---Ee----------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK--E---PHLTGYVD---FA----------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~--~---~~Gtg~Id---l~----------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++.. + +.|+++++ +. +.++ ++||++.
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 97 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLL--RCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIG-MVFQRPN 97 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHH--HHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEE-EEecCCc
Confidence 45665555568999999999999999998 89988754 2 35666554 10 1123 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.+.
T Consensus 98 ~~~~tv~eni~~~ 110 (253)
T PRK14261 98 PFPKSIYENVAYG 110 (253)
T ss_pred cCcccHHHHHHhh
Confidence 9998777999874
No 222
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.69 E-value=8.1e-09 Score=95.09 Aligned_cols=71 Identities=27% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------ccccCCCCCCCCCCcc-chhcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------ESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ .++|++.++|. ++.+|
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLL--RLIAGLLPPAAGTIKLDGGDIDDPDVAEACH-YLGHRNAMKPALTVAEN 93 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEeCcchhhHhhcE-EecCCCcCCCCCcHHHH
Confidence 45554444468999999999999999998 9999998888777766521 1233 55677888888 55588
Q ss_pred CCC
Q 043574 88 CEP 90 (530)
Q Consensus 88 Val 90 (530)
+.+
T Consensus 94 l~~ 96 (207)
T PRK13539 94 LEF 96 (207)
T ss_pred HHH
Confidence 865
No 223
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.8e-08 Score=104.35 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=54.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee---------ccccCCCCCC---CCCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA---------ESIKDHHPQH---NQSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~---------~~Ig~mvfQ~---~nLFP 81 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++ +. +.++ ++||+ .++||
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl--k~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~ 354 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELM--NCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA-YITESRRDNGFFP 354 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE-EccCccccCCCcC
Confidence 45554444458999999999999999999 99999998998888764 10 1244 67886 67999
Q ss_pred c-chhccCCCC
Q 043574 82 W-SSWSNCEPP 91 (530)
Q Consensus 82 H-tsveNValp 91 (530)
. ++.+|+.++
T Consensus 355 ~~tv~e~l~~~ 365 (510)
T PRK09700 355 NFSIAQNMAIS 365 (510)
T ss_pred CCcHHHHhccc
Confidence 8 555999874
No 224
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.68 E-value=1.2e-08 Score=96.49 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=54.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ ++||++.+++. ++
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 92 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLL--RLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA-LVEQDSDTAVPLTV 92 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE-EecccCccCCCCCH
Confidence 44554444458999999999999999999 9999999999888777511 1233 66799888888 55
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.+|+.++
T Consensus 93 ~e~l~~~ 99 (256)
T TIGR03873 93 RDVVALG 99 (256)
T ss_pred HHHHHhc
Confidence 5998763
No 225
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=1e-08 Score=95.77 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=55.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------ccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------ESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------~~Ig~mvfQ~~nLFPH-tsve 86 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..++.|+++++-. +.++ ++||+..+|+. ++.+
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl--~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLL--RLIAGFETPTSGEILLDGKDITNLPPHKRPVN-TVFQNYALFPHLTVFE 91 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEEcCcCChhhcceE-EEecccccCCCCcHHH
Confidence 56665555568999999999999999998 9999998888787776411 2234 66799999998 5558
Q ss_pred cCCC
Q 043574 87 NCEP 90 (530)
Q Consensus 87 NVal 90 (530)
|+.+
T Consensus 92 nl~~ 95 (232)
T cd03300 92 NIAF 95 (232)
T ss_pred HHHH
Confidence 8865
No 226
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.2e-08 Score=97.49 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. +++|+++++-. +.++ ++||++.
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 101 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTIL--RCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIG-MVFQKPN 101 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHH--HHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEE-EEccCCc
Confidence 34554444568999999999999999998 89988754 35677665410 1233 5679999
Q ss_pred CCccchhccCCCCC
Q 043574 79 SFPWSSWSNCEPPT 92 (530)
Q Consensus 79 LFPHtsveNValp~ 92 (530)
+||.++.+|+.++.
T Consensus 102 ~~~~tv~enl~~~~ 115 (264)
T PRK14243 102 PFPKSIYDNIAYGA 115 (264)
T ss_pred cccccHHHHHHhhh
Confidence 99976669998753
No 227
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.68 E-value=1.5e-08 Score=96.08 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=58.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. ++|+++++=. +.++ ++||++.++++ ++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl--~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLL--ARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA-YLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHH--HHHcCCCC-CCeEEEECCEecCcCCHHHHhhheE-EecccCccCCCccH
Confidence 45665555568999999999999999998 89999874 4666665411 1133 66898888887 55
Q ss_pred hccCCCCC-----hhhHHHHHHHHHHHH
Q 043574 85 WSNCEPPT-----LSNCKAQLETCLESM 107 (530)
Q Consensus 85 veNValp~-----~~d~r~r~e~aLE~~ 107 (530)
.+|+.+.. ..+.+++++++++.+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~ 114 (248)
T PRK03695 87 FQYLTLHQPDKTRTEAVASALNEVAEAL 114 (248)
T ss_pred HHHHHhcCccCCCcHHHHHHHHHHHHHc
Confidence 59988742 222244555555543
No 228
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.68 E-value=1.5e-08 Score=91.05 Aligned_cols=69 Identities=25% Similarity=0.192 Sum_probs=54.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------ccccCCCCCCCCCCccchhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------ESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------~~Ig~mvfQ~~nLFPHtsve 86 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+.+|++.++-. +.++ ++||++.+||.++.+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~ 93 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLL--QLLTGDLKPQQGEITLDGVPVSDLEKALSSLIS-VLNQRPYLFDTTLRN 93 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHH--HHHhccCCCCCCEEEECCEEHHHHHHHHHhhEE-EEccCCeeecccHHH
Confidence 45555555568999999999999999998 9999998888787766511 2234 668999999877779
Q ss_pred cC
Q 043574 87 NC 88 (530)
Q Consensus 87 NV 88 (530)
|+
T Consensus 94 ~i 95 (178)
T cd03247 94 NL 95 (178)
T ss_pred hh
Confidence 98
No 229
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=7e-09 Score=99.98 Aligned_cols=72 Identities=22% Similarity=0.098 Sum_probs=54.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCC-CCcc-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQ-SFPW-S 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~n-LFPH-t 83 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+.+|+++++-. +.++ ++||++. .+++ +
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl--~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~~t 98 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTA--RLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG-MVFQNPDNQFVGAT 98 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE-EEEECHHHhhccCC
Confidence 45555544568999999999999999998 9999999999888877511 1234 6678864 5666 6
Q ss_pred hhccCCCC
Q 043574 84 SWSNCEPP 91 (530)
Q Consensus 84 sveNValp 91 (530)
+.+|+.++
T Consensus 99 v~eni~~~ 106 (277)
T PRK13642 99 VEDDVAFG 106 (277)
T ss_pred HHHHHHhh
Confidence 66999763
No 230
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.68 E-value=7.9e-09 Score=95.48 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=53.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------ccccCCCCCCCCCCcc-chhccC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------ESIKDHHPQHNQSFPW-SSWSNC 88 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------~~Ig~mvfQ~~nLFPH-tsveNV 88 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-. +.++ +.||++.+||. ++.+|+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~-~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLL--KMITGILRPTSGEIIFDGHPWTRKDLHKIG-SLIESPPLYENLTARENL 91 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEeccccccccEE-EEcCCCCccccCCHHHHH
Confidence 34444444468999999999999999998 8999998888777776411 2334 66899999997 555888
Q ss_pred CC
Q 043574 89 EP 90 (530)
Q Consensus 89 al 90 (530)
.+
T Consensus 92 ~~ 93 (223)
T TIGR03740 92 KV 93 (223)
T ss_pred HH
Confidence 65
No 231
>PLN03130 ABC transporter C family member; Provisional
Probab=98.67 E-value=1.1e-08 Score=120.67 Aligned_cols=155 Identities=18% Similarity=0.212 Sum_probs=100.5
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccch
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHts 84 (530)
.||++..-.-..|+.++|+||||||||||+ +++-++.++++|++.|| +++.|+ ++||++.||+-|.
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl--~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is-iVpQdp~LF~GTI 1329 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSML--NALFRIVELERGRILIDGCDISKFGLMDLRKVLG-IIPQAPVLFSGTV 1329 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHH--HHHhCcCCCCCceEEECCEecccCCHHHHHhccE-EECCCCccccccH
Confidence 366666665678999999999999999998 99999999999999888 223445 7799999999999
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 85 WSNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 85 veNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
.+||.+..... .+++.++|+.-. -.+..+.|. .||||-+ ++++ .+.|++----.--.||
T Consensus 1330 reNLd~~~~~t-deei~~Al~~a~----------l~~~I~~lp--~GLdt~V----ge~G----~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1330 RFNLDPFNEHN-DADLWESLERAH----------LKDVIRRNS--LGLDAEV----SEAG----ENFSVGQRQLLSLARA 1388 (1622)
T ss_pred HHHhCcCCCCC-HHHHHHHHHHcC----------cHHHHHhCc--cccCccc----cCCC----CCCCHHHHHHHHHHHH
Confidence 99998854222 345666655321 123333332 3666643 2211 1223333333445666
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLV 203 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~ 203 (530)
++- + -.+|=+.|=+.++..|-..-.++++.
T Consensus 1389 LLr-----~----p~ILILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130 1389 LLR-----R----SKILVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred HHc-----C----CCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 664 1 14667777777777775555555554
No 232
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.67 E-value=3.1e-08 Score=92.45 Aligned_cols=63 Identities=29% Similarity=0.153 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------ccccCCCCCCCCCCcc---chhccCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------ESIKDHHPQHNQSFPW---SSWSNCEPP 91 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------~~Ig~mvfQ~~nLFPH---tsveNValp 91 (530)
..|+.++|+||||+|||||+ +++.++..+++|++.++=. +.++ ++||+++++++ ++.+|+.++
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLL--RAILGLIPPAKGTVKVAGASPGKGWRHIG-YVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCccchHhhCcEE-EecccccccCCCCccHHHHHHhc
Confidence 36899999999999999999 9999999999777776521 2345 67898887554 445887653
No 233
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=1.1e-08 Score=91.72 Aligned_cols=69 Identities=28% Similarity=0.309 Sum_probs=53.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+.+|+++++-. +.++ +.||++.+|+.++.
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl--~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~~~~~~~~~t~~ 93 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLL--KLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA-YVPQDPFLFSGTIR 93 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHH--HHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE-EEcCCchhccchHH
Confidence 55555544568999999999999999999 9999998888787776511 1123 56799899987666
Q ss_pred ccC
Q 043574 86 SNC 88 (530)
Q Consensus 86 eNV 88 (530)
+|+
T Consensus 94 e~l 96 (171)
T cd03228 94 ENI 96 (171)
T ss_pred HHh
Confidence 997
No 234
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1e-08 Score=96.09 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=51.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CC---CCceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KE---PHLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~---~~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++. .+ ++|+++++ + ++.++ ++||+..
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~ 96 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLL--RSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIG-MVFQQPN 96 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHH--HHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEE-EEecCCc
Confidence 44554444458999999999999999998 8888873 24 36776654 1 01233 6689999
Q ss_pred CCccchhccCCC
Q 043574 79 SFPWSSWSNCEP 90 (530)
Q Consensus 79 LFPHtsveNVal 90 (530)
+|+.++.+|+.+
T Consensus 97 ~~~~tv~enl~~ 108 (252)
T PRK14239 97 PFPMSIYENVVY 108 (252)
T ss_pred cCcCcHHHHHHH
Confidence 998666699975
No 235
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.66 E-value=1.1e-08 Score=97.92 Aligned_cols=71 Identities=21% Similarity=0.151 Sum_probs=52.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCC--CCccc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQ--SFPWS 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~n--LFPHt 83 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++. ++|..
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~ 104 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLA--KMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIR-MIFQDPSTSLNPRQ 104 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHH--HHHhCCCCCCCCEEEECCEECCCCchhhHhccEE-EEecCchhhcCcch
Confidence 45555555568999999999999999998 9999999999888877511 1233 5578764 67774
Q ss_pred h-hccCCC
Q 043574 84 S-WSNCEP 90 (530)
Q Consensus 84 s-veNVal 90 (530)
+ .+|+.+
T Consensus 105 tv~~~l~~ 112 (267)
T PRK15112 105 RISQILDF 112 (267)
T ss_pred hHHHHHHH
Confidence 4 477754
No 236
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.66 E-value=1.6e-08 Score=93.61 Aligned_cols=71 Identities=23% Similarity=0.157 Sum_probs=52.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------ccccCCCCCCCCCCcc-chhcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------ESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..++.|++.++=. +.++ +.+|++.+||. ++.+|
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~-~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLL--RVLAGLLHVESGQIQIDGKTATRGDRSRFMA-YLGHLPGLKADLSTLEN 102 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHH--HHHhCCCCCCCeeEEECCEEccchhhhhceE-EeecCcccccCCcHHHH
Confidence 34443333458999999999999999999 9999999888777666511 1234 56788888888 55588
Q ss_pred CCC
Q 043574 88 CEP 90 (530)
Q Consensus 88 Val 90 (530)
+.+
T Consensus 103 l~~ 105 (214)
T PRK13543 103 LHF 105 (214)
T ss_pred HHH
Confidence 754
No 237
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.66 E-value=1.6e-08 Score=109.27 Aligned_cols=144 Identities=21% Similarity=0.200 Sum_probs=89.5
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCCh-hh------HH
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPTL-SN------CK 97 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~~-~d------~r 97 (530)
-..|+.++|+||||||||||+ +++.++.++++|++.++-++.++ ++||++.+|+.++.||+.++.. .+ .+
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl--~lL~Gl~~~~~G~i~~~~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~ 551 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLF--RILGELWPVYGGRLTKPAKGKLF-YVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSD 551 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCeEeecCCCcEE-EECCCCCCCCcCHHHHHhcCCChhhhhccCCCH
Confidence 348899999999999999998 99999988887777665445667 8899999999977799998641 10 12
Q ss_pred HHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHHHHhhcccccccc
Q 043574 98 AQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAVYALSARVNAKEI 177 (530)
Q Consensus 98 ~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav~a~s~~~~~~e~ 177 (530)
++++++|+.+ | + .+. +++..|++|.. +. ....|++---...-.||++. +
T Consensus 552 ~~i~~~l~~~-------~-l--~~~---~~~~~g~~~~~-----~~----~~~LSgGqkQRl~iARal~~-----~---- 600 (659)
T TIGR00954 552 KDLEQILDNV-------Q-L--THI---LEREGGWSAVQ-----DW----MDVLSGGEKQRIAMARLFYH-----K---- 600 (659)
T ss_pred HHHHHHHHHc-------C-C--HHH---HhhcCCccccc-----cc----ccCCCHHHHHHHHHHHHHHc-----C----
Confidence 2333333321 1 1 111 23344556531 10 11234444444445555554 1
Q ss_pred hhhhhcccCCCccChhHHHHHHHHH
Q 043574 178 DGVLELRENGKRLSLEEETYLREGL 202 (530)
Q Consensus 178 ~~~~~~~ek~~~~s~ee~~y~~e~~ 202 (530)
-.++=+.|-+..|+.+....+.+.+
T Consensus 601 p~illLDEpts~LD~~~~~~l~~~l 625 (659)
T TIGR00954 601 PQFAILDECTSAVSVDVEGYMYRLC 625 (659)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHH
Confidence 1345567778888888766666643
No 238
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=9.7e-09 Score=99.02 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=52.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCC--CCccc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQ--SFPWS 83 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~n--LFPHt 83 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||+++ +|+.+
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~t 95 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLF--RHFNGILKPTSGSVLIRGEPITKENIREVRKFVG-LVFQNPDDQIFSPT 95 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEECCcCCHHHHHhheE-EEecCccccccccc
Confidence 45554444468999999999999999998 9999998999888776511 1233 5678864 55556
Q ss_pred hhccCCC
Q 043574 84 SWSNCEP 90 (530)
Q Consensus 84 sveNVal 90 (530)
+.+|+.+
T Consensus 96 v~~~l~~ 102 (277)
T PRK13652 96 VEQDIAF 102 (277)
T ss_pred HHHHHHh
Confidence 6799876
No 239
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.4e-08 Score=95.35 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=52.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++....-..|+.++|+||||+|||||+ +++.++.. +.+|+++++=. +.++ .++|++.
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 95 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFL--RCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVG-MVFQQPT 95 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEE-EEecCCc
Confidence 45555444468999999999999999998 99998865 35666665411 1123 5579999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 96 ~~~~tv~enl~~~ 108 (251)
T PRK14251 96 PFPFSVYDNVAYG 108 (251)
T ss_pred cCCCcHHHHHHHH
Confidence 9987777999764
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.65 E-value=1.5e-08 Score=104.61 Aligned_cols=72 Identities=21% Similarity=0.093 Sum_probs=53.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC--CCceEEEEE------------eccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE--PHLTGYVDF------------AESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~--~~Gtg~Idl------------~~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+ ++|+++++= ++.++ ++||++.+||.
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl--~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 92 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLM--KILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV-IIHQELTLVPE 92 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE-EEeeccccCCC
Confidence 45554444568999999999999999998 889888765 567766541 01244 67899999998
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 93 ~tv~~~l~~~ 102 (500)
T TIGR02633 93 LSVAENIFLG 102 (500)
T ss_pred CcHHHHHHhh
Confidence 555998764
No 241
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.2e-08 Score=97.71 Aligned_cols=71 Identities=20% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCCCCC--CCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQHNQ--SFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ~~n--LFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++. +|+
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~~~~~~ 92 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLF--MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA-TVFQDPEQQIFY 92 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHH--HHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE-EEeeChhhcccc
Confidence 45555444568999999999999999998 9999999999887776411 1233 5678765 333
Q ss_pred cchhccCCC
Q 043574 82 WSSWSNCEP 90 (530)
Q Consensus 82 HtsveNVal 90 (530)
.++.+|+.+
T Consensus 93 ~~~~~~l~~ 101 (271)
T PRK13638 93 TDIDSDIAF 101 (271)
T ss_pred ccHHHHHHH
Confidence 244477765
No 242
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.65 E-value=2.2e-08 Score=91.22 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------ccccCCCCCCCCCCcc-chhccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------ESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ..+|+..+++. ++.+|+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~-~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLL--RMIAGIMQPSSGNIYYKNCNINNIAKPYCT-YIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred cCCcEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCcccChhhhhhEE-eccCCcCCCccCCHHHHHHH
Confidence 57999999999999999998 9999998999887776521 1122 55687777777 55599866
No 243
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.65 E-value=1e-08 Score=107.76 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=59.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++++-...|+ ++||++.+||+ ++.+|+.++.
T Consensus 20 il~~is~~i~~Ge~~~liG~NGsGKSTLl--~~i~G~~~p~~G~i~~~~~~~i~-~v~Q~~~~~~~~tv~e~i~~~~ 93 (552)
T TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLL--RIMAGVDKEFNGEARPAPGIKVG-YLPQEPQLDPTKTVRENVEEGV 93 (552)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEecCCCEEE-EEeccCCCCCCCcHHHHHHHhh
Confidence 55665555678999999999999999999 99999988997877765335567 88999999999 5559997753
No 244
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.2e-08 Score=99.41 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=52.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEE---Ee----------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVD---FA----------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Id---l~----------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. ++.|+++++ +. +.++ ++||+..
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl--~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~-~v~q~~~ 130 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFL--RCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIG-MVFQKPN 130 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEE-EEecCCc
Confidence 45554444468999999999999999998 88888865 566776664 10 1233 5689999
Q ss_pred CCccchhccCCC
Q 043574 79 SFPWSSWSNCEP 90 (530)
Q Consensus 79 LFPHtsveNVal 90 (530)
+||.++.+|+.+
T Consensus 131 l~~~tv~enl~~ 142 (285)
T PRK14254 131 PFPKSIYDNVAY 142 (285)
T ss_pred cCcCCHHHHHHH
Confidence 999766699875
No 245
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.4e-08 Score=98.70 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. +++|++.++ + ++.++ ++||++.
T Consensus 54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 130 (286)
T PRK14275 54 AVKKVNADILSKYVTAIIGPSGCGKSTFL--RAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIG-MVFQKPN 130 (286)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEE-EECCCCC
Confidence 34444433458999999999999999998 89988743 366766653 1 01233 5689999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 131 l~~~tv~enl~~~ 143 (286)
T PRK14275 131 PFPKSIFDNIAYG 143 (286)
T ss_pred CCccCHHHHHHhH
Confidence 9998666999874
No 246
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.7e-08 Score=94.66 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=53.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe------------ccccCCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA------------ESIKDHHPQHNQS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~------------~~Ig~mvfQ~~nL 79 (530)
+|++....-..|+.++|.||||+|||||+ +++.++..+ ++|+++++-. +.++ ++||++.+
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~ 94 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLL--RCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVG-MVFQKPNP 94 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHH--HHHHhhcccccCCCCceEEEECCEEcccccchHHHHhhee-EEecCCCc
Confidence 45555554568999999999999999998 888888664 4677666410 1233 66899999
Q ss_pred CccchhccCCCC
Q 043574 80 FPWSSWSNCEPP 91 (530)
Q Consensus 80 FPHtsveNValp 91 (530)
||.++.+|+.+.
T Consensus 95 ~~~tv~~~l~~~ 106 (249)
T PRK14253 95 FPMSIYENVAYG 106 (249)
T ss_pred CcccHHHHHHhH
Confidence 997666999763
No 247
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=3.1e-08 Score=97.65 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=51.9
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-cccc------------CCCCCCCCCCccchh-ccCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIK------------DHHPQHNQSFPWSSW-SNCEP 90 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig------------~mvfQ~~nLFPHtsv-eNVal 90 (530)
-..|++++|+||+|+|||||+ +.+.++.++. +|.|.+. ++|+ .++||.-++||.+|+ ||+..
T Consensus 26 v~~Geiv~llG~NGaGKTTlL--kti~Gl~~~~--~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~ 101 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLL--KTIMGLVRPR--SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLL 101 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhCCCCCC--CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhh
Confidence 358999999999999999998 9999998888 5555555 5554 255699999999666 99998
Q ss_pred CC
Q 043574 91 PT 92 (530)
Q Consensus 91 p~ 92 (530)
+.
T Consensus 102 g~ 103 (237)
T COG0410 102 GA 103 (237)
T ss_pred hh
Confidence 54
No 248
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.4e-08 Score=95.30 Aligned_cols=71 Identities=27% Similarity=0.291 Sum_probs=51.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+ ++|+++++=. +.++ ++||++.
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl--~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 94 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLL--RSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVG-MVFQKPT 94 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHH--HHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEE-EEecCCc
Confidence 34454444458999999999999999998 899988653 6677766510 1233 5679999
Q ss_pred CCccchhccCCC
Q 043574 79 SFPWSSWSNCEP 90 (530)
Q Consensus 79 LFPHtsveNVal 90 (530)
+|+.++.+|+.+
T Consensus 95 ~~~~tv~e~l~~ 106 (250)
T PRK14262 95 PFPMSIYDNVAF 106 (250)
T ss_pred cCcccHHHHHHH
Confidence 999666699976
No 249
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1.2e-08 Score=98.34 Aligned_cols=72 Identities=18% Similarity=0.022 Sum_probs=53.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCCC--CCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHNQ--SFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~n--LFPH 82 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..++.|+++++-. +.++ ++||++. +++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~ 93 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLA--LHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG-IVFQNPETQFVGR 93 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEECCccccHHHHHhheE-EEEEChhhhcccc
Confidence 45555444568999999999999999998 9999999999888777611 1123 5678865 3444
Q ss_pred chhccCCCC
Q 043574 83 SSWSNCEPP 91 (530)
Q Consensus 83 tsveNValp 91 (530)
++.+|+.++
T Consensus 94 tv~enl~~~ 102 (274)
T PRK13644 94 TVEEDLAFG 102 (274)
T ss_pred hHHHHHHhh
Confidence 666999774
No 250
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.6e-08 Score=95.01 Aligned_cols=72 Identities=25% Similarity=0.307 Sum_probs=52.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++.. +++|+++++-. +.++ ++||++.
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~-~~~q~~~ 94 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFI--RTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVG-MVFQKPN 94 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheE-EEecCCc
Confidence 34554444458999999999999999998 88888743 36677665411 1133 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 95 ~~~~t~~~nl~~~ 107 (250)
T PRK14266 95 PFPKSIFDNVAYG 107 (250)
T ss_pred cCcchHHHHHHhH
Confidence 9998777999764
No 251
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.9e-08 Score=107.51 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=55.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----Ee-----cccc-CCCCCCCCCCccchh-
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----FA-----ESIK-DHHPQHNQSFPWSSW- 85 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----l~-----~~Ig-~mvfQ~~nLFPHtsv- 85 (530)
|++-...-..|++.+|+|.+|+|||||+ +++.+...|++|+++++ +. ++.| .+++|+.+|+|++++
T Consensus 24 L~~v~l~v~~GEV~aL~GeNGAGKSTLm--KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 24 LDGVSLTVRPGEVHALLGENGAGKSTLM--KILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred eccceeEEeCceEEEEecCCCCCHHHHH--HHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 3333333458999999999999999998 99999999998888877 11 1112 355699999999666
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
||+-++.
T Consensus 102 eNifLgr 108 (500)
T COG1129 102 ENIFLGR 108 (500)
T ss_pred HHhhccc
Confidence 9998844
No 252
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=1.1e-08 Score=99.01 Aligned_cols=71 Identities=21% Similarity=0.128 Sum_probs=51.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----------------ccccCCCCCCC--C
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----------------ESIKDHHPQHN--Q 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----------------~~Ig~mvfQ~~--n 78 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++ .
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~-~v~q~~~~~ 102 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMI--QLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIG-LVFQFPEYQ 102 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCceEEECCEEccccccccccHHHHhccEE-EEEeCcchh
Confidence 45554444468999999999999999998 9999998888888776410 1123 556775 4
Q ss_pred CCccchhccCCC
Q 043574 79 SFPWSSWSNCEP 90 (530)
Q Consensus 79 LFPHtsveNVal 90 (530)
+|+.++.+|+.+
T Consensus 103 ~~~~tv~enl~~ 114 (289)
T PRK13645 103 LFQETIEKDIAF 114 (289)
T ss_pred hhhhHHHHHHHH
Confidence 666666688865
No 253
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.63 E-value=1.9e-08 Score=92.29 Aligned_cols=70 Identities=21% Similarity=0.206 Sum_probs=54.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCCceEEEEE--------eccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPHLTGYVDF--------AESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~Gtg~Idl--------~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++. .+.+|+++++= .+.++ +.||++.+||. +..
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl--~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~t~~ 100 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLL--NALAGRRTGLGVSGEVLINGRPLDKRSFRKIIG-YVPQDDILHPTLTVR 100 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCCceEEEECCEeCchHhhhheEE-EccCcccCCCCCcHH
Confidence 56665555568999999999999999998 9999998 88877776641 12344 67899999998 555
Q ss_pred ccCC
Q 043574 86 SNCE 89 (530)
Q Consensus 86 eNVa 89 (530)
+|+.
T Consensus 101 ~~i~ 104 (194)
T cd03213 101 ETLM 104 (194)
T ss_pred HHHH
Confidence 8874
No 254
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.6e-08 Score=94.92 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-----CceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-----HLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-----~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..++ .|+++++=. +.++ ++||++.
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 95 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFL--RAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVG-MVFQKPN 95 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHH--HHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeE-EEeccCc
Confidence 34454444458999999999999999998 9999986543 566665410 1233 5679999
Q ss_pred CCcc-chhccCCC
Q 043574 79 SFPW-SSWSNCEP 90 (530)
Q Consensus 79 LFPH-tsveNVal 90 (530)
+||. ++.+|+.+
T Consensus 96 ~~~~~t~~enl~~ 108 (252)
T PRK14272 96 PFPTMSVFDNVVA 108 (252)
T ss_pred cCcCCCHHHHHHH
Confidence 9998 65699975
No 255
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.63 E-value=2.3e-08 Score=95.78 Aligned_cols=71 Identities=21% Similarity=0.094 Sum_probs=52.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccc--h-hccCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWS--S-WSNCEP 90 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHt--s-veNVal 90 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++-...++ ++||++.+++.. + .+|+.+
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl--~~i~Gl~~p~~G~i~~~~~~~i~-~v~q~~~~~~~l~~~~~~~~~~ 92 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLV--RVVLGLVAPDEGVIKRNGKLRIG-YVPQKLYLDTTLPLTVNRFLRL 92 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCccCEE-EeccccccccccChhHHHHHhc
Confidence 34444444458999999999999999998 99999999997776654334566 788998888862 2 366543
No 256
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=3.6e-08 Score=97.73 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=65.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------ccccCCCCCC---CCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------ESIKDHHPQH---NQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------~~Ig~mvfQ~---~nLFPHtsv 85 (530)
+|++-...-..|++++|+||+|+|||||+ +++-++-.|.+|++.+.-. ..|+ .+||. ..-||-++.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLl--K~iLGll~p~~G~i~~~g~~~~~~~~~~~Ig-YVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLL--KAILGLLKPSSGEIKIFGKPVRKRRKRLRIG-YVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCcCCcceEEEccccccccccCCeEE-EcCcccccCCCCCcCHH
Confidence 44444444568899999999999999998 9999999999888877511 2467 88994 345777888
Q ss_pred ccCCCCC-----------hhhHHHHHHHHHHHH
Q 043574 86 SNCEPPT-----------LSNCKAQLETCLESM 107 (530)
Q Consensus 86 eNValp~-----------~~d~r~r~e~aLE~~ 107 (530)
|=+..+. ++| +++++++||..
T Consensus 96 d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~V 127 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNKKD-KEKVDEALERV 127 (254)
T ss_pred HHHHccCcccccccccccHHH-HHHHHHHHHHc
Confidence 7777743 455 77888888764
No 257
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=1.4e-08 Score=98.56 Aligned_cols=71 Identities=21% Similarity=0.114 Sum_probs=53.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCC--CC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHN--QS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~--nL 79 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++=. +.++ ++||++ .+
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~v~q~~~~~~ 98 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLM--QHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVS-LVFQFPEAQL 98 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEECccccccchHHHHHhceE-EEEeChhhhh
Confidence 45555554568999999999999999998 9999999999888877511 1233 567875 46
Q ss_pred CccchhccCCC
Q 043574 80 FPWSSWSNCEP 90 (530)
Q Consensus 80 FPHtsveNVal 90 (530)
|+.++.+|+.+
T Consensus 99 ~~~tv~e~l~~ 109 (287)
T PRK13641 99 FENTVLKDVEF 109 (287)
T ss_pred ccchHHHHHHH
Confidence 65566699875
No 258
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.63 E-value=3.2e-08 Score=94.18 Aligned_cols=72 Identities=21% Similarity=0.080 Sum_probs=55.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+.+|+++++- .+.++ ++||++.+|+.++.
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~-~v~q~~~l~~~tv~ 112 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS-IILQDPILFSGSIR 112 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHH--HHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEE-EECCCCcccccHHH
Confidence 45555444568999999999999999998 999999888888888751 12234 66899999998777
Q ss_pred ccCCCC
Q 043574 86 SNCEPP 91 (530)
Q Consensus 86 eNValp 91 (530)
+|+.+.
T Consensus 113 ~nl~~~ 118 (257)
T cd03288 113 FNLDPE 118 (257)
T ss_pred HhcCcC
Confidence 998753
No 259
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1.1e-08 Score=98.65 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=52.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCCCC--CCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQHN--QSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ~~--nLFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.|+ ++||++ .+|+
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~ 93 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLF--LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG-IVFQNPDDQLFA 93 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCccEEEECCEECccccchHHHHHhheE-EEeeChhhhhcc
Confidence 45555544568999999999999999998 9999998888787776521 1123 567886 4666
Q ss_pred cchhccCCC
Q 043574 82 WSSWSNCEP 90 (530)
Q Consensus 82 HtsveNVal 90 (530)
.++.+|+.+
T Consensus 94 ~tv~e~i~~ 102 (275)
T PRK13639 94 PTVEEDVAF 102 (275)
T ss_pred ccHHHHHHH
Confidence 677799865
No 260
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.62 E-value=2.2e-08 Score=105.29 Aligned_cols=69 Identities=19% Similarity=0.054 Sum_probs=55.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-e----------ccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-A----------ESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-~----------~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.+|++|+++++= + +.++ +++|++.||+.++.
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~--~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLA--KLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS-AIFADFHLFDDLIG 433 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc-EEccChhhhhhhhh
Confidence 45554445568999999999999999999 999999999988888761 1 1233 67899999999988
Q ss_pred ccC
Q 043574 86 SNC 88 (530)
Q Consensus 86 eNV 88 (530)
+|.
T Consensus 434 ~n~ 436 (555)
T TIGR01194 434 PDE 436 (555)
T ss_pred ccc
Confidence 995
No 261
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=2.8e-08 Score=93.48 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=51.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC--C---CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK--E---PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~--~---~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. + ++|+++++-. +.++ ++||++.
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 96 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYL--RTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVG-MVFQQPN 96 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHH--HHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEE-EEECCCc
Confidence 45554444468999999999999999998 89988743 3 3676665411 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 97 ~~~~tv~~nl~~~ 109 (252)
T PRK14255 97 PFPFSIYENVIYG 109 (252)
T ss_pred cCCCcHHHHHHHH
Confidence 9997666998763
No 262
>PLN03211 ABC transporter G-25; Provisional
Probab=98.61 E-value=1.8e-08 Score=109.48 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC--CceEEEE---E----eccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP--HLTGYVD---F----AESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~--~Gtg~Id---l----~~~Ig~mvfQ~~nLFPH-tsve 86 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.+...+. +|++.++ . .+.++ .++|+..+||+ ++.|
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL--~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~-yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLL--NALAGRIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLTVRE 159 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHH--HHHhCCCCCCceeEEEEECCEECchhhccceE-EECcccccCCcCCHHH
Confidence 56665555568999999999999999998 8889886654 4555543 1 12344 77899999999 5559
Q ss_pred cCCCC------C---hhhHHHHHHHHHHHH
Q 043574 87 NCEPP------T---LSNCKAQLETCLESM 107 (530)
Q Consensus 87 NValp------~---~~d~r~r~e~aLE~~ 107 (530)
|+.+. . .++.+++++++|+.+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~l 189 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISEL 189 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 98762 1 233456677777765
No 263
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.61 E-value=1.8e-08 Score=92.45 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=52.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCC--CCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHN--QSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~--nLF 80 (530)
+|++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++=. +.++ ++||+. .++
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 96 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLA--RAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQ-MVFQDPMSSLN 96 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEEccccchhhHHHhhccEE-EEecCchhhcC
Confidence 55665555568999999999999999999 9999998888787776411 1233 557887 466
Q ss_pred cc-chhccCCC
Q 043574 81 PW-SSWSNCEP 90 (530)
Q Consensus 81 PH-tsveNVal 90 (530)
|. ++.+|+.+
T Consensus 97 ~~~tv~~nl~~ 107 (228)
T cd03257 97 PRMTIGEQIAE 107 (228)
T ss_pred CcCCHHHHHHH
Confidence 66 44588865
No 264
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1.8e-08 Score=96.93 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=52.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
+|++....-..|+.++|+||||+|||||+ +++.++.. ++.|+++++ + ++.++ ++||++.
T Consensus 39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl--~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~ 115 (271)
T PRK14238 39 ALKNINLDIHENEVTAIIGPSGCGKSTYI--KTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVG-MVFQKPN 115 (271)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEE-EEecCCc
Confidence 45555544468999999999999999998 88888865 466666654 1 01233 5689999
Q ss_pred CCccchhccCCC
Q 043574 79 SFPWSSWSNCEP 90 (530)
Q Consensus 79 LFPHtsveNVal 90 (530)
+|+.++.+|+.+
T Consensus 116 ~~~~tv~eni~~ 127 (271)
T PRK14238 116 PFPKSIYDNVTY 127 (271)
T ss_pred cccccHHHHHHH
Confidence 998766699976
No 265
>PTZ00243 ABC transporter; Provisional
Probab=98.60 E-value=2.9e-08 Score=116.84 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=97.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
||++..-.-..|+.++|+||||+|||||+ +++-++.++++|++.|| +++.|+ ++||++.||+-|+.
T Consensus 1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl--~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~-iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL--LTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS-MIPQDPVLFDGTVR 1401 (1560)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce-EECCCCccccccHH
Confidence 45555554568999999999999999998 89999999998998888 224445 78999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 86 SNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 86 eNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
+||.+..... .+.+.++|+.- |. .+..+.| -.|+||-+- +++. +.|++----.--.||+
T Consensus 1402 eNIdp~~~~s-deeI~~Al~~a-------~l---~~~I~~l--p~Gldt~vg----e~G~----nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1402 QNVDPFLEAS-SAEVWAALELV-------GL---RERVASE--SEGIDSRVL----EGGS----NYSVGQRQLMCMARAL 1460 (1560)
T ss_pred HHhCcccCCC-HHHHHHHHHHC-------CC---hHHHhhC--ccccccccc----CCcC----cCCHHHHHHHHHHHHH
Confidence 9998743111 23455555431 11 2233333 356776542 2111 2233333334456666
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVG 204 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~ 204 (530)
+- + . -.+|=+.|=+.++..+-....++++..
T Consensus 1461 L~---~--~---~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1461 LK---K--G---SGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred hc---C--C---CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 63 0 0 135566666667766655555555543
No 266
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=2.3e-08 Score=95.26 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=52.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEE---------------eccccCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDF---------------AESIKDHHPQH 76 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl---------------~~~Ig~mvfQ~ 76 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+ ++|+++++- ++.++ +.||+
T Consensus 31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~ 107 (265)
T PRK14252 31 ALKNINMMVHEKQVTALIGPSGCGKSTFL--RCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS-MVFQK 107 (265)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEE-EEccC
Confidence 45555444568999999999999999998 889988654 566666531 01233 56899
Q ss_pred CCCCccchhccCCCC
Q 043574 77 NQSFPWSSWSNCEPP 91 (530)
Q Consensus 77 ~nLFPHtsveNValp 91 (530)
+.+||.++.+|+.++
T Consensus 108 ~~~~~~tv~eni~~~ 122 (265)
T PRK14252 108 PNPFPKSIFENVAYG 122 (265)
T ss_pred CcCCcchHHHHHHhH
Confidence 999998666999764
No 267
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=2.5e-08 Score=95.12 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=51.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-----CceEEEE---Ee----------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-----HLTGYVD---FA----------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-----~Gtg~Id---l~----------~~Ig~mvfQ~~n 78 (530)
+|.+..-.-..|+.++|.||||+|||||+ +++.++..++ +|+++++ +. +.++ ++||+.+
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl--~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~~~q~~~ 98 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFL--KCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVS-MVHPKPN 98 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHH--HHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEE-EEecCCc
Confidence 45555555568999999999999999998 8999987764 5655543 10 1122 4579989
Q ss_pred CCccchhccCCC
Q 043574 79 SFPWSSWSNCEP 90 (530)
Q Consensus 79 LFPHtsveNVal 90 (530)
+||.++.||+.+
T Consensus 99 l~~~tv~enl~~ 110 (261)
T PRK14258 99 LFPMSVYDNVAY 110 (261)
T ss_pred cCcccHHHHHHH
Confidence 999666699875
No 268
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=2.2e-08 Score=95.07 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=52.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEE---Ee----------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVD---FA----------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Id---l~----------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+ .+|+++++ +. +.++ ++||++.
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLl--k~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 98 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFI--KTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG-MVFQRPN 98 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHH--HHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheE-EEecccc
Confidence 45555554568999999999999999998 888887653 35666654 10 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 99 l~~~tv~enl~~~ 111 (259)
T PRK14260 99 PFPMSIYENVAYG 111 (259)
T ss_pred cCCccHHHHHHHH
Confidence 9996666999763
No 269
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.60 E-value=2.5e-08 Score=95.75 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=52.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++.. +.+|+++++-. +.++ ++||+..
T Consensus 40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl--~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 116 (272)
T PRK14236 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLL--RCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVG-MVFQRPN 116 (272)
T ss_pred EeeeEEEEEcCCCEEEEECCCCCCHHHHH--HHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEE-EEecCCc
Confidence 45555554568999999999999999998 88888855 36677766411 1223 5579999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.+.
T Consensus 117 l~~~tv~enl~~~ 129 (272)
T PRK14236 117 PFPKSIYENVVYG 129 (272)
T ss_pred cCcccHHHHHHHH
Confidence 9998666999763
No 270
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.60 E-value=1.8e-08 Score=91.18 Aligned_cols=71 Identities=20% Similarity=0.058 Sum_probs=51.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCC---CCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHN---QSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~---nLFP 81 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||+. .++|
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELA--EALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA-YVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE-EecCCcccCcccC
Confidence 34444444468999999999999999999 9999999999888776511 1233 556773 5788
Q ss_pred c-chhccCCC
Q 043574 82 W-SSWSNCEP 90 (530)
Q Consensus 82 H-tsveNVal 90 (530)
. ++.+|+.+
T Consensus 92 ~~t~~e~l~~ 101 (182)
T cd03215 92 DLSVAENIAL 101 (182)
T ss_pred CCcHHHHHHH
Confidence 7 55588865
No 271
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.59 E-value=3.7e-08 Score=95.74 Aligned_cols=72 Identities=17% Similarity=0.026 Sum_probs=51.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC--------CceEEEEEe-----------ccccCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP--------HLTGYVDFA-----------ESIKDHHPQHN 77 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~--------~Gtg~Idl~-----------~~Ig~mvfQ~~ 77 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..++ .|+++++=. +.++ ++||+.
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~v~q~~ 92 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLL--KALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRA-VLPQAA 92 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcE-EecccC
Confidence 34454444468999999999999999998 9999987776 666666411 1123 568887
Q ss_pred CCCcc-chhccCCCC
Q 043574 78 QSFPW-SSWSNCEPP 91 (530)
Q Consensus 78 nLFPH-tsveNValp 91 (530)
.+++. ++.+|+.++
T Consensus 93 ~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 93 QPAFAFSAREIVLLG 107 (272)
T ss_pred CCCCCCcHHHHHhhc
Confidence 75555 666999774
No 272
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.59 E-value=2.5e-08 Score=99.84 Aligned_cols=70 Identities=20% Similarity=0.086 Sum_probs=50.1
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC---CceEEEEEe---------------ccccCCCCCCC--
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP---HLTGYVDFA---------------ESIKDHHPQHN-- 77 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~---~Gtg~Idl~---------------~~Ig~mvfQ~~-- 77 (530)
+++..-.-..|+.++|+||||||||||+ +++.++..++ +|+++++=. +.|+ ++||++
T Consensus 32 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~--~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~-~v~Q~~~~ 108 (330)
T PRK09473 32 VNDLNFSLRAGETLGIVGESGSGKSQTA--FALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQIS-MIFQDPMT 108 (330)
T ss_pred EeeeEEEEcCCCEEEEECCCCchHHHHH--HHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEE-EEEcCchh
Confidence 3343333358999999999999999998 8888887775 677766510 1345 778987
Q ss_pred CCCccchh-ccCCC
Q 043574 78 QSFPWSSW-SNCEP 90 (530)
Q Consensus 78 nLFPHtsv-eNVal 90 (530)
.++|++++ +|+..
T Consensus 109 ~l~p~~~v~~~i~~ 122 (330)
T PRK09473 109 SLNPYMRVGEQLME 122 (330)
T ss_pred hcCCCCCHHHHHHH
Confidence 78898554 76643
No 273
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3.1e-08 Score=95.94 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=52.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe------------ccccCCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA------------ESIKDHHPQHNQS 79 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~------------~~Ig~mvfQ~~nL 79 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+ ++|+++++-. ..++ ++||++.+
T Consensus 36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl--~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~-~v~q~~~l 112 (276)
T PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFL--RTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG-MLFQRPNP 112 (276)
T ss_pred EeeeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheE-EeccCCcc
Confidence 34444444458999999999999999998 888888664 5666666411 1233 66899999
Q ss_pred CccchhccCCCC
Q 043574 80 FPWSSWSNCEPP 91 (530)
Q Consensus 80 FPHtsveNValp 91 (530)
||.++.+|+.++
T Consensus 113 ~~~tv~eni~~~ 124 (276)
T PRK14271 113 FPMSIMDNVLAG 124 (276)
T ss_pred CCccHHHHHHHH
Confidence 996666999763
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.58 E-value=3.2e-08 Score=106.09 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-----------eccccCCCCCCC--CCCcc-chhccC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-----------AESIKDHHPQHN--QSFPW-SSWSNC 88 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-----------~~~Ig~mvfQ~~--nLFPH-tsveNV 88 (530)
..|+.++|+||||||||||+ +++.++..+++|+++++ + ++.|+ ++||++ +++|. ++.+|+
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLl--k~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~-~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTG--RALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ-FIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeE-EEecCchhhcCCCCCHHHHH
Confidence 48899999999999999998 99999998998887764 1 11344 678986 69998 444888
Q ss_pred CC
Q 043574 89 EP 90 (530)
Q Consensus 89 al 90 (530)
.+
T Consensus 425 ~~ 426 (623)
T PRK10261 425 ME 426 (623)
T ss_pred HH
Confidence 65
No 275
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.58 E-value=4.8e-08 Score=100.89 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=51.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-CCceEEEE---E---------eccccCCCCCCC---CCCc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-PHLTGYVD---F---------AESIKDHHPQHN---QSFP 81 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-~~Gtg~Id---l---------~~~Ig~mvfQ~~---nLFP 81 (530)
+++..-.-..|+.++|+||||||||||+ +++.++..| ++|+++++ + ++.++ ++||+. ++||
T Consensus 276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl--~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~l~~ 352 (500)
T TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELV--QALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIA-MVPEDRKRHGIVP 352 (500)
T ss_pred cccceeEEeCCcEEEEeCCCCCCHHHHH--HHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCE-EcCcchhhCCcCC
Confidence 3443333458899999999999999998 899998774 67777664 1 11244 668885 6999
Q ss_pred c-chhccCCCC
Q 043574 82 W-SSWSNCEPP 91 (530)
Q Consensus 82 H-tsveNValp 91 (530)
. ++.+|+.++
T Consensus 353 ~~tv~~~~~~~ 363 (500)
T TIGR02633 353 ILGVGKNITLS 363 (500)
T ss_pred CCCHHHHhcch
Confidence 8 555999874
No 276
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.58 E-value=1.9e-08 Score=93.87 Aligned_cols=69 Identities=22% Similarity=0.157 Sum_probs=50.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccccCCCCCCCCCCccc-hhccCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIKDHHPQHNQSFPWS-SWSNCEP 90 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig~mvfQ~~nLFPHt-sveNVal 90 (530)
+|++....-..|++++|+||||||||||+ +++.++..+++|+++ .++ ..+. ..|.+.+||++ +.||+.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLl--k~i~Gl~~~~sG~i~-~~~~~~~~--~~~~~~l~~~ltv~enl~~ 72 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLT--RLLCGLDAPDEGDFI-GLRGDALP--LGANSFILPGLTGEENARM 72 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCccCCCCCEE-EecCceec--cccccccCCcCcHHHHHHH
Confidence 34554445568999999999999999998 999999888877765 133 2221 23667799994 4599976
No 277
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.58 E-value=3.9e-08 Score=96.75 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE----------EeccccCCCCCCCCCCccchh-ccCCC-CC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD----------FAESIKDHHPQHNQSFPWSSW-SNCEP-PT 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id----------l~~~Ig~mvfQ~~nLFPHtsv-eNVal-p~ 92 (530)
-.+|++++|.||+|+||||+| |++..+-.|++|.++|+ .++.|| ..|-+..||..+|+ ||+.+ +.
T Consensus 25 ae~Gei~GlLG~NGAGKTT~L--RmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG-Vl~~e~glY~RlT~rEnl~~Fa~ 101 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLL--RMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG-VLFGERGLYARLTARENLKYFAR 101 (245)
T ss_pred eccceEEEEEcCCCCCchhHH--HHHHHhccCCCceEEEeecccccChHHHhhhcc-eecCCcChhhhhhHHHHHHHHHH
Confidence 468999999999999999999 99999999999999999 335666 55677888888665 99988 22
Q ss_pred -----hhhHHHHHHHHHHH
Q 043574 93 -----LSNCKAQLETCLES 106 (530)
Q Consensus 93 -----~~d~r~r~e~aLE~ 106 (530)
..+.+++++++-+.
T Consensus 102 L~~l~~~~~kari~~l~k~ 120 (245)
T COG4555 102 LNGLSRKEIKARIAELSKR 120 (245)
T ss_pred HhhhhhhHHHHHHHHHHHH
Confidence 45556666665444
No 278
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.58 E-value=5.3e-08 Score=95.71 Aligned_cols=71 Identities=23% Similarity=0.130 Sum_probs=56.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
+|++....-..|+.++|+||||+|||||+ +++.++..+++|++++ +..++ +++|++.+||.++.+|+.+..
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl--~~I~Gl~~p~~G~I~i--~g~i~-yv~q~~~l~~~tv~enl~~~~ 122 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLL--MLILGELEPSEGKIKH--SGRIS-FSSQFSWIMPGTIKENIIFGV 122 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEE--CCEEE-EEeCcccccccCHHHHhhccc
Confidence 45554444568999999999999999998 8999998888666654 33466 778999999987779998753
No 279
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=1.6e-08 Score=92.32 Aligned_cols=71 Identities=20% Similarity=0.103 Sum_probs=51.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCCceEEEEE-------eccccCCCCCCCCCCcc-chhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPHLTGYVDF-------AESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~Gtg~Idl-------~~~Ig~mvfQ~~nLFPH-tsve 86 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++. .+++|+++++- .+.++ +++|++++||. ++.+
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~-~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLL--DVLAGRKTAGVITGEILINGRPLDKNFQRSTG-YVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHH--HHHhCCCcCCCcceEEEECCEehHHHhhhceE-EecccCccccCCcHHH
Confidence 34444444468999999999999999998 8888864 46767766541 12344 66899999998 5558
Q ss_pred cCCC
Q 043574 87 NCEP 90 (530)
Q Consensus 87 NVal 90 (530)
|+.+
T Consensus 99 ~l~~ 102 (192)
T cd03232 99 ALRF 102 (192)
T ss_pred HHHH
Confidence 8853
No 280
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.58 E-value=4.1e-08 Score=115.06 Aligned_cols=154 Identities=20% Similarity=0.190 Sum_probs=97.5
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccch
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHts 84 (530)
.||++..-.-..|+.++|+||||||||||+ +++-++.++++|++.|| +++.|+ ++||++-||+-|.
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~--~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~-iVpQdp~LF~gTI 1376 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLT--LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT-IIPQDPVLFSGSL 1376 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHH--HHHhcCccCCCCeEEECCEEccccCHHHHHhcCe-EECCCCcccCccH
Confidence 467776666679999999999999999998 88999999998999888 223445 7799999999999
Q ss_pred hccCCC-CChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHH
Q 043574 85 WSNCEP-PTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWER 163 (530)
Q Consensus 85 veNVal-p~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~r 163 (530)
.+|+.+ +...| +.+.++|+.- |. .+....| -.||||-+ ++++ .+.|++----.--.|
T Consensus 1377 r~NLdp~~~~sd--eei~~al~~a-------~l---~~~I~~l--p~GLdt~v----~e~G----~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957 1377 RMNLDPFSQYSD--EEVWWALELA-------HL---KTFVSAL--PDKLDHEC----AEGG----ENLSVGQRQLVCLAR 1434 (1522)
T ss_pred HHHcCcccCCCH--HHHHHHHHHc-------Cc---HHHHhhC--ccCCCcee----cCCC----CcCCHHHHHHHHHHH
Confidence 999985 33222 2344444321 11 2222322 24677653 2211 112333222334456
Q ss_pred HHHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHH
Q 043574 164 AVYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLV 203 (530)
Q Consensus 164 av~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~ 203 (530)
|++- + -.+|=+.|=+.++..|-..-+++++.
T Consensus 1435 ALLr-----~----~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1435 ALLR-----K----TKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred HHHc-----C----CCEEEEECCcccCCHHHHHHHHHHHH
Confidence 6653 1 24566777777777775556666654
No 281
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.57 E-value=2.9e-08 Score=103.88 Aligned_cols=68 Identities=18% Similarity=0.063 Sum_probs=53.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-.+|+.++|.||||+|||||+ +++.++.+|++|+++++= ++.++ .++|++.+|+.+..
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~--~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 414 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLA--MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS-AVFTDFHLFDQLLG 414 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE-EEecChhHHHHhhc
Confidence 34444444458999999999999999998 999999999988888761 12233 66799999999888
Q ss_pred cc
Q 043574 86 SN 87 (530)
Q Consensus 86 eN 87 (530)
+|
T Consensus 415 ~n 416 (547)
T PRK10522 415 PE 416 (547)
T ss_pred cc
Confidence 88
No 282
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=2.5e-08 Score=93.84 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=50.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC---CC--CCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN---KE--PHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~---~~--~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
++++....-..|+.++|.||||+|||||+ +++.++. .+ ++|+++++-. +.++ ++||++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~v~q~~~ 94 (250)
T PRK14245 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFL--RLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVG-MVFQRPN 94 (250)
T ss_pred EEeeeeEEEeCCCEEEEECCCCCCHHHHH--HHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheE-EEecCCc
Confidence 34444444468999999999999999998 8888762 22 4576666511 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 95 ~~~~tv~~nl~~~ 107 (250)
T PRK14245 95 PFPKSIFENVAYG 107 (250)
T ss_pred cCcccHHHHHHHH
Confidence 9987666999763
No 283
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=3.3e-08 Score=103.14 Aligned_cols=70 Identities=23% Similarity=0.093 Sum_probs=50.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCC--CCcc-chhccCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQ--SFPW-SSWSNCE 89 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~n--LFPH-tsveNVa 89 (530)
+|++..-.-..|+.++|.||||||||||+ +++.++..|++|+++++-.+.++ ++||++. ++++ ++.+|+.
T Consensus 334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl--~~i~G~~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~~~t~~~~~~ 406 (530)
T PRK15064 334 LFKNLNLLLEAGERLAIIGENGVGKTTLL--RTLVGELEPDSGTVKWSENANIG-YYAQDHAYDFENDLTLFDWMS 406 (530)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCceEEE-EEcccccccCCCCCcHHHHHH
Confidence 34444333458999999999999999999 99999999997766654334566 7889864 5555 4447764
No 284
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.1e-08 Score=106.25 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=61.3
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E---------------------e-ccccCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F---------------------A-ESIKDH 72 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l---------------------~-~~Ig~m 72 (530)
+++..-.-..|+.++|+||||||||||+ +++.++..+++|++.++ + + +.|+ +
T Consensus 32 l~~is~~v~~Ge~~~lvG~nGsGKSTLl--~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig-~ 108 (623)
T PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTA--LALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA-M 108 (623)
T ss_pred EEeeEEEECCCCEEEEECCCCChHHHHH--HHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE-E
Confidence 3443333358999999999999999998 99999988887776652 1 0 1355 7
Q ss_pred CCCCC--CCCcc-chhccCCCCC-------hhhHHHHHHHHHHHH
Q 043574 73 HPQHN--QSFPW-SSWSNCEPPT-------LSNCKAQLETCLESM 107 (530)
Q Consensus 73 vfQ~~--nLFPH-tsveNValp~-------~~d~r~r~e~aLE~~ 107 (530)
+||++ +++|. ++.+|+.++. ..+++++++++|+.+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQV 153 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC
Confidence 78987 78998 5559997631 233456666666654
No 285
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.56 E-value=3.1e-08 Score=92.39 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=45.4
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC----CCceEEEEEe---------ccccCCCCCCCC--CCccchh-ccC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE----PHLTGYVDFA---------ESIKDHHPQHNQ--SFPWSSW-SNC 88 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~----~~Gtg~Idl~---------~~Ig~mvfQ~~n--LFPHtsv-eNV 88 (530)
-..|+.++|.||||+|||||+ +++.++..+ ++|+++++=. +.++ ++||++. ++|..++ +|+
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~~~t~~~~~ 85 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTC--LAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA-TIMQNPRTAFNPLFTMGNHA 85 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhcCCCCccCccccEEEECCEechhhhhhhheeE-EEecCchhhcCcccCHHHHH
Confidence 458999999999999999998 999999887 7777776510 2344 5678864 4455444 666
Q ss_pred C
Q 043574 89 E 89 (530)
Q Consensus 89 a 89 (530)
.
T Consensus 86 ~ 86 (230)
T TIGR02770 86 I 86 (230)
T ss_pred H
Confidence 4
No 286
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=4.7e-08 Score=105.77 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=75.1
Q ss_pred hHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccc--------cCCCCCCCCCCccc
Q 043574 13 LLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESI--------KDHHPQHNQSFPWS 83 (530)
Q Consensus 13 ~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~I--------g~mvfQ~~nLFPHt 83 (530)
...++|++-.-....|++++|.||||+|||||+ +-+..+.+...+-+|.|.++ +.. ...+.|+..++|++
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL-~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLL-NALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHH-HHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 357788887777889999999999999999995 55555555433445555544 111 13556999999996
Q ss_pred hh-ccCCC------CC---hhhHHHHHHHHHHHHHHHhHHhccc
Q 043574 84 SW-SNCEP------PT---LSNCKAQLETCLESMAERGIKLGTI 117 (530)
Q Consensus 84 sv-eNVal------p~---~~d~r~r~e~aLE~~a~~~v~~g~~ 117 (530)
|| |++.+ |. +++.++++++.++.|--+-++-.-|
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~i 163 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLI 163 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhcccee
Confidence 66 77776 43 5777999999999997765544444
No 287
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=4.1e-08 Score=106.09 Aligned_cols=64 Identities=25% Similarity=0.241 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchhccCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
-.+|+-++|+|+|||||||++ |++=+|.+ .+|.++|| +++.|+ .+||+..||-.|++.||.++.
T Consensus 375 I~kGekVaIvG~nGsGKSTil--r~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig-~VPQd~~LFndTIl~NI~YGn 449 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTIL--RLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG-VVPQDSVLFNDTILYNIKYGN 449 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHH--HHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee-EeCCcccccchhHHHHhhcCC
Confidence 358899999999999999997 66666767 88999999 445566 889999999999999999966
No 288
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=3.5e-08 Score=94.66 Aligned_cols=71 Identities=21% Similarity=0.129 Sum_probs=50.4
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEe-------------ccccCCCCCCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFA-------------ESIKDHHPQHNQS 79 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~-------------~~Ig~mvfQ~~nL 79 (530)
+++..-.-..|+.++|+||||+|||||+ +++.++..+ +.|+++++-. +.++ .+||+..+
T Consensus 24 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~~ 100 (261)
T PRK14263 24 VRDSHVPIRKNEITGFIGPSGCGKSTVL--RSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG-MVFQQPNP 100 (261)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE-EEecCCcc
Confidence 4444444468999999999999999998 888888664 5566555410 1123 55799888
Q ss_pred CccchhccCCCC
Q 043574 80 FPWSSWSNCEPP 91 (530)
Q Consensus 80 FPHtsveNValp 91 (530)
|+-++.+|+.++
T Consensus 101 ~~~tv~enl~~~ 112 (261)
T PRK14263 101 FSMSIFDNVAFG 112 (261)
T ss_pred ccccHHHHHHHH
Confidence 865666999764
No 289
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.55 E-value=5.6e-08 Score=100.79 Aligned_cols=71 Identities=18% Similarity=0.072 Sum_probs=53.4
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-e-----------ccccCCCCCCC---CCCcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-A-----------ESIKDHHPQHN---QSFPW 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-~-----------~~Ig~mvfQ~~---nLFPH 82 (530)
+++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++= + +.++ ++||++ ++||+
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl--~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~~~ 344 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELM--KVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV-YISEDRKRDGLVLG 344 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHH--HHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE-EecCccccCCCcCC
Confidence 4554444468999999999999999998 999999888877777641 1 1244 668985 68898
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.+|+.++
T Consensus 345 ~tv~e~l~~~ 354 (501)
T PRK10762 345 MSVKENMSLT 354 (501)
T ss_pred CcHHHHhhhh
Confidence 555999764
No 290
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.55 E-value=6.1e-08 Score=92.96 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
.|++++|+||||||||||+ +++.++..+++|++.++- +.|+ +.+|+..++++ ++.+|+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLl--k~L~G~~~p~~G~i~~~g-~~i~-~~~q~~~~~~~~tv~e~l~~ 84 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFI--KMLAGVLKPDEGDIEIEL-DTVS-YKPQYIKADYEGTVRDLLSS 84 (246)
T ss_pred CCCEEEEECCCCCCHHHHH--HHHhCCCcCCCCeEEECC-ceEE-EecccccCCCCCCHHHHHHH
Confidence 7899999999999999998 999999999866655431 3566 77898877666 44477743
No 291
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.55 E-value=1.7e-08 Score=99.16 Aligned_cols=85 Identities=25% Similarity=0.255 Sum_probs=63.1
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc------------CCCCCCCCCCccchh-ccCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK------------DHHPQHNQSFPWSSW-SNCEPP 91 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig------------~mvfQ~~nLFPHtsv-eNValp 91 (530)
-..|++++|.||+|+||||.+ .++-++-.+++|.+.++- ++|+ ...||++++|..+++ +||...
T Consensus 27 v~~GEiVGLLGPNGAGKTT~F--ymi~Glv~~d~G~i~ld~-~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~v 103 (243)
T COG1137 27 VNSGEIVGLLGPNGAGKTTTF--YMIVGLVRPDSGKILLDD-EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV 103 (243)
T ss_pred EcCCcEEEEECCCCCCceeEE--EEEEEEEecCCceEEECC-cccccCChHHHhhcCcccccccchHhhcCcHHHHHHHH
Confidence 358899999999999999999 999999999977777661 3443 244699999999666 999872
Q ss_pred C------hh--hHHHHHHHHHHHHHHHhH
Q 043574 92 T------LS--NCKAQLETCLESMAERGI 112 (530)
Q Consensus 92 ~------~~--d~r~r~e~aLE~~a~~~v 112 (530)
. .. +.+.+++++||.+-..-+
T Consensus 104 lE~~~~d~~~~~~~~~l~~LL~ef~i~hl 132 (243)
T COG1137 104 LEIREKDLKKAERKEELDALLEEFHITHL 132 (243)
T ss_pred HhhhhcchhHHHHHHHHHHHHHHhchHHH
Confidence 2 22 223457788887654433
No 292
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.55 E-value=6.8e-08 Score=92.82 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------ccccCCCCCCCCC---Cccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------ESIKDHHPQHNQS---FPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------~~Ig~mvfQ~~nL---FPHtsv 85 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++=. +.++ ++||++.+ ++.+..
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~-~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLF--KALMGFVRLASGKISILGQPTRQALQKNLVA-YVPQSEEVDWSFPVLVE 98 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEhHHhhccceEE-EeccccccccCCCcchh
Confidence 34444444458999999999999999998 9999998888777766511 1244 67888765 233444
Q ss_pred ccCCC
Q 043574 86 SNCEP 90 (530)
Q Consensus 86 eNVal 90 (530)
+|+.+
T Consensus 99 ~~i~~ 103 (272)
T PRK15056 99 DVVMM 103 (272)
T ss_pred hheec
Confidence 77754
No 293
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=3.9e-08 Score=98.55 Aligned_cols=72 Identities=25% Similarity=0.254 Sum_probs=53.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.. +++|++.++ + ++.++ ++||++.
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl--~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~-~v~q~~~ 173 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFL--RNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIG-MVFQKPT 173 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhccccccCCCCCceEEEECCEEccccccchHhhhccEE-EEecCCc
Confidence 45554444468899999999999999998 77777764 456666653 1 12344 6789999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 174 ~~~~ti~eNi~~~ 186 (329)
T PRK14257 174 PFEMSIFDNVAYG 186 (329)
T ss_pred cCCCcHHHHHHhH
Confidence 9988888999873
No 294
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.53 E-value=5.7e-08 Score=91.19 Aligned_cols=71 Identities=20% Similarity=0.040 Sum_probs=50.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc--CCCCCceEEEEEe--cc----------ccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL--NKEPHLTGYVDFA--ES----------IKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l--~~~~~Gtg~Idl~--~~----------Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++ ..+++|+++++-. .+ ++ ++||++.+||.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~~~q~~~~~~~ 98 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLS--KVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIF-LAFQYPIEIPG 98 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHH--HHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEE-EEecccccccc
Confidence 45554444468999999999999999998 899997 3577788777511 01 12 45688888888
Q ss_pred chh-ccCCC
Q 043574 83 SSW-SNCEP 90 (530)
Q Consensus 83 tsv-eNVal 90 (530)
++. +|+.+
T Consensus 99 ~~~~~~l~~ 107 (252)
T CHL00131 99 VSNADFLRL 107 (252)
T ss_pred ccHHHHHHH
Confidence 554 77644
No 295
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.53 E-value=7.6e-08 Score=103.79 Aligned_cols=78 Identities=24% Similarity=0.178 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCC--CCCCCccchh-ccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQ--HNQSFPWSSW-SNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ--~~nLFPHtsv-eNVa 89 (530)
+.|+.++|+|+||||||||. |++.++..|++|++.++=. +++. |+|| +++|-|+.++ ++++
T Consensus 315 ~~GE~lglVGeSGsGKSTla--r~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~Q-mvFQdp~~SLnPr~tV~~~i~ 391 (539)
T COG1123 315 REGETLGLVGESGSGKSTLA--RILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQ-MVFQDPYSSLNPRMTVGDILA 391 (539)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEEeCcccccccchhhhhhhheE-EEEeCcccccCccccHHHHHH
Confidence 48899999999999999998 9999999998776666411 2333 7776 5899999555 8887
Q ss_pred CCC-------hhhHHHHHHHHHHH
Q 043574 90 PPT-------LSNCKAQLETCLES 106 (530)
Q Consensus 90 lp~-------~~d~r~r~e~aLE~ 106 (530)
.|. ..+.++++.++|+.
T Consensus 392 epL~~~~~~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 392 EPLRIHGGGSGAERRARVAELLEL 415 (539)
T ss_pred hHHhhhcccchHHHHHHHHHHHHH
Confidence 744 24456677777765
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.53 E-value=5e-08 Score=102.64 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=53.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCC-CCCcc-chhccCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHN-QSFPW-SSWSNCEPP 91 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~-nLFPH-tsveNValp 91 (530)
+|++....-..|+.++|+||||||||||+ +++.++..+++|++++.-...|+ ++||++ .++|+ ++.+|+.++
T Consensus 337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl--~~l~G~~~p~~G~i~~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~ 410 (552)
T TIGR03719 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLF--RMITGQEQPDSGTIKIGETVKLA-YVDQSRDALDPNKTVWEEISGG 410 (552)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHH--HHHcCCCCCCCeEEEECCceEEE-EEeCCccccCCCCcHHHHHHhh
Confidence 34443333458899999999999999999 99999988997777653112456 778986 48888 555999774
No 297
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.53 E-value=6.2e-08 Score=90.68 Aligned_cols=70 Identities=20% Similarity=0.081 Sum_probs=48.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++- +++. ...+...++|. ++.+|+.+
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~p~~G~i~~~g-~~~~-~~~~~~~~~~~~tv~enl~~ 107 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLL--RLLAGIYPPDSGTVTVRG-RVSS-LLGLGGGFNPELTGRENIYL 107 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECC-EEch-hhcccccCCCCCcHHHHHHH
Confidence 34444433458999999999999999999 999999889977666542 2332 12234556677 44488865
No 298
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=5.6e-08 Score=95.52 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=52.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-----CCCceEEEEEe-------------ccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-----EPHLTGYVDFA-------------ESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-----~~~Gtg~Idl~-------------~~Ig~mvfQ~~n 78 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.++.. ++.|+++++-. +.++ ++||+..
T Consensus 60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl--~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 136 (305)
T PRK14264 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFL--RCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVG-MVFQSPN 136 (305)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceE-EEccCCc
Confidence 34443333458999999999999999998 88888864 46677766410 1233 5679999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+||.++.+|+.++
T Consensus 137 l~~~tv~enl~~~ 149 (305)
T PRK14264 137 PFPKSIRENISYG 149 (305)
T ss_pred cccccHHHHHHhH
Confidence 9998777999864
No 299
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=6.5e-08 Score=87.23 Aligned_cols=70 Identities=24% Similarity=0.284 Sum_probs=51.6
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-------------ccccCCCCCCCCCCcc-c
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-------------ESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-------------~~Ig~mvfQ~~nLFPH-t 83 (530)
+++..-.-..|+.++|.||||+|||||+ +++.++..++.|+++++-. +.++ +.||++.+|+. +
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 92 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLL--RCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG-MVFQDFALFPHLT 92 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE-EEecCCccCCCCC
Confidence 4443333458999999999999999998 8899998888777776411 1122 45799899988 5
Q ss_pred hhccCCC
Q 043574 84 SWSNCEP 90 (530)
Q Consensus 84 sveNVal 90 (530)
..+|+.+
T Consensus 93 ~~~~l~~ 99 (178)
T cd03229 93 VLENIAL 99 (178)
T ss_pred HHHheee
Confidence 5599864
No 300
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.51 E-value=4.1e-08 Score=115.05 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE--E----------eccccCCCCCCCCCCccch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD--F----------AESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id--l----------~~~Ig~mvfQ~~nLFPHts 84 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ . ++.|+ +++|++.||+.++
T Consensus 400 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl--~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig-~V~Q~~~LF~~TI 476 (1466)
T PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTIL--KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIG-VVSQDPLLFSNSI 476 (1466)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHH--HHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhcc-EecccccchhccH
Confidence 55665555578999999999999999999 99999999999999883 1 12345 7789999999888
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.|||.++
T Consensus 477 ~eNI~~g 483 (1466)
T PTZ00265 477 KNNIKYS 483 (1466)
T ss_pred HHHHHhc
Confidence 8999985
No 301
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.51 E-value=3.8e-08 Score=94.52 Aligned_cols=70 Identities=24% Similarity=0.209 Sum_probs=49.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------------ccccCCCCCCC--CCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------------ESIKDHHPQHN--QSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------------~~Ig~mvfQ~~--nLF 80 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++..+++|+++++-. +.++ ++||++ .++
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 103 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLA--RLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQ-MVFQDSISAVN 103 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEE-EEEcChhhccC
Confidence 34554444568999999999999999998 9999998889887776511 1233 556876 356
Q ss_pred ccch-hccCC
Q 043574 81 PWSS-WSNCE 89 (530)
Q Consensus 81 PHts-veNVa 89 (530)
|..+ .+|+.
T Consensus 104 ~~~t~~~~l~ 113 (268)
T PRK10419 104 PRKTVREIIR 113 (268)
T ss_pred CCCCHHHHHH
Confidence 6644 47764
No 302
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=6.2e-08 Score=96.50 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=47.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC----CCCceEEEE---E---e---------ccccCCCCCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK----EPHLTGYVD---F---A---------ESIKDHHPQHNQ 78 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~----~~~Gtg~Id---l---~---------~~Ig~mvfQ~~n 78 (530)
+++..-.-..|+.++|+||||||||||+ +++.++.. +++|+++++ + . +.|+ ++||++.
T Consensus 23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl--~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~-~v~Q~~~ 99 (330)
T PRK15093 23 VDRVSMTLTEGEIRGLVGESGSGKSLIA--KAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVS-MIFQEPQ 99 (330)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHH--HHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEE-EEecCcc
Confidence 4443333458999999999999999998 88888865 466666654 1 0 1344 7789865
Q ss_pred --CCccchh-ccCC
Q 043574 79 --SFPWSSW-SNCE 89 (530)
Q Consensus 79 --LFPHtsv-eNVa 89 (530)
++|..++ +|+.
T Consensus 100 ~~l~p~~tv~~~l~ 113 (330)
T PRK15093 100 SCLDPSERVGRQLM 113 (330)
T ss_pred hhcCccccHHHHHH
Confidence 6787444 7764
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.51 E-value=9.4e-08 Score=99.13 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=52.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCCC---CCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQHN---QSFP 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~~---nLFP 81 (530)
++.+..-.-..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||++ .+||
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl--k~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~ 344 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELM--KLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM-LCPEDRKAEGIIP 344 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHH--HHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE-EcCcCHhhCCCcC
Confidence 34444433468999999999999999998 9999998888777776411 1233 567886 4899
Q ss_pred c-chhccCCCC
Q 043574 82 W-SSWSNCEPP 91 (530)
Q Consensus 82 H-tsveNValp 91 (530)
. ++.+|+.++
T Consensus 345 ~~tv~e~l~~~ 355 (501)
T PRK11288 345 VHSVADNINIS 355 (501)
T ss_pred CCCHHHHhccc
Confidence 7 555998764
No 304
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=3.9e-08 Score=98.08 Aligned_cols=70 Identities=11% Similarity=-0.053 Sum_probs=48.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC----CCceEEEEEe---------------ccccCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE----PHLTGYVDFA---------------ESIKDHHPQHN 77 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~----~~Gtg~Idl~---------------~~Ig~mvfQ~~ 77 (530)
+|++..-.-..|++++|.||||||||||+ +++.++..+ .+|+++++=. +.|+ ++||++
T Consensus 22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~--~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~-~v~Q~~ 98 (326)
T PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSS--LAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVA-MIFQDP 98 (326)
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHH--HHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEE-EEecCc
Confidence 45555555568999999999999999998 888887653 5566665410 1244 678986
Q ss_pred --CCCccchh-ccCC
Q 043574 78 --QSFPWSSW-SNCE 89 (530)
Q Consensus 78 --nLFPHtsv-eNVa 89 (530)
+++|.+++ +|+.
T Consensus 99 ~~~l~p~~~v~~~i~ 113 (326)
T PRK11022 99 MTSLNPCYTVGFQIM 113 (326)
T ss_pred hhhcCCcCCHHHHHH
Confidence 58888554 5543
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.1e-07 Score=98.63 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-CCCceEEEE---Ee---------ccccCCCCCCC---CCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-EPHLTGYVD---FA---------ESIKDHHPQHN---QSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-~~~Gtg~Id---l~---------~~Ig~mvfQ~~---nLF 80 (530)
++++..-.-..|+.++|+||||+|||||+ +++.++.. +++|+++++ +. +.++ ++||++ ++|
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl--k~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~ 353 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELV--QCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA-MVPEDRKRDGIV 353 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHH--HHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCE-EeCcchhhCCCc
Confidence 34444444468999999999999999998 99999877 477777764 10 1244 567874 688
Q ss_pred cc-chhccCCCC
Q 043574 81 PW-SSWSNCEPP 91 (530)
Q Consensus 81 PH-tsveNValp 91 (530)
|. ++.+|+.++
T Consensus 354 ~~~tv~e~l~~~ 365 (506)
T PRK13549 354 PVMGVGKNITLA 365 (506)
T ss_pred CCCCHHHHhhhh
Confidence 88 555999764
No 306
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=7.1e-08 Score=93.18 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=51.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEE---E----------eccccCCCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVD---F----------AESIKDHHPQHNQ 78 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Id---l----------~~~Ig~mvfQ~~n 78 (530)
+|++....-..|+.++|+||||+|||||+ +++.++..+ ..|+++++ + .+.++ ++||+..
T Consensus 35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl--~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~-~v~q~~~ 111 (274)
T PRK14265 35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLL--RCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVG-MVFQRPN 111 (274)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHH--HHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEE-EEccCCc
Confidence 34444444468999999999999999998 888887542 45666553 1 01233 6689999
Q ss_pred CCccchhccCCCC
Q 043574 79 SFPWSSWSNCEPP 91 (530)
Q Consensus 79 LFPHtsveNValp 91 (530)
+|+.++.+|+.++
T Consensus 112 l~~~tv~~nl~~~ 124 (274)
T PRK14265 112 PFPKSIYENIAFA 124 (274)
T ss_pred cccccHHHHHHhH
Confidence 9987666999764
No 307
>PLN03232 ABC transporter C family member; Provisional
Probab=98.49 E-value=9.2e-08 Score=112.05 Aligned_cols=84 Identities=18% Similarity=0.109 Sum_probs=63.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCChhhH
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPTLSNC 96 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~~~d~ 96 (530)
+|++..-.-..|+.++|+||||||||||+ +++-++-++.+|.. +.++..|+ .++|++.||.-|..|||.++...+
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl--~lLlG~~~~~~G~i-~~~~~~Ia-yv~Q~p~Lf~gTIreNI~fg~~~~- 706 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLI--SAMLGELSHAETSS-VVIRGSVA-YVPQVSWIFNATVRENILFGSDFE- 706 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhCCCcccCCCE-EEecCcEE-EEcCccccccccHHHHhhcCCccC-
Confidence 46666665678999999999999999997 77777777775543 45566777 889999999999999999976222
Q ss_pred HHHHHHHHH
Q 043574 97 KAQLETCLE 105 (530)
Q Consensus 97 r~r~e~aLE 105 (530)
+++.+++++
T Consensus 707 ~e~~~~vl~ 715 (1495)
T PLN03232 707 SERYWRAID 715 (1495)
T ss_pred HHHHHHHHH
Confidence 334444444
No 308
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.49 E-value=6.4e-08 Score=91.75 Aligned_cols=46 Identities=22% Similarity=0.039 Sum_probs=37.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~ 66 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLL--NALSARLAPDAGEVHYR 66 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCEEEEC
Confidence 44444444568999999999999999999 99999988997877654
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.49 E-value=7e-08 Score=101.77 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=53.3
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCC-CCCcc-chhccCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHN-QSFPW-SSWSNCEPP 91 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~-nLFPH-tsveNValp 91 (530)
|++....-..|+.++|+||||||||||+ +++.++..+++|++++.-...|+ ++||+. .++|. ++.+|+.++
T Consensus 340 l~~isl~i~~Ge~~~l~G~NGsGKSTLl--~~i~G~~~p~~G~i~~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~ 412 (556)
T PRK11819 340 IDDLSFSLPPGGIVGIIGPNGAGKSTLF--KMITGQEQPDSGTIKIGETVKLA-YVDQSRDALDPNKTVWEEISGG 412 (556)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCceEEE-EEeCchhhcCCCCCHHHHHHhh
Confidence 3333333358899999999999999998 99999999997777653112456 778986 78888 555999774
No 310
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.2e-07 Score=102.57 Aligned_cols=65 Identities=25% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchhccCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
-..|+.++|.||||+||||++ |++=+|-+..+|.+.|| ++.+|| .+||+.-||-.|...||.++.
T Consensus 561 v~pGktvAlVG~SGaGKSTim--RlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNdTI~yNIryak 636 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIM--RLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFNDTILYNIRYAK 636 (790)
T ss_pred ecCCcEEEEECCCCCchhHHH--HHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecceeeeheeecC
Confidence 457899999999999999987 88888999998999988 445667 889999999999999999933
No 311
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.46 E-value=8.1e-08 Score=88.28 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=48.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCCceEEEEEe------------ccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPHLTGYVDFA------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~Gtg~Idl~------------~~Ig~mvfQ~~nLFPH 82 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++. .+++|+++++-. ..++ ++||++.+||.
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl--~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 91 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLA--KTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF-LAFQYPPEIPG 91 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHH--HHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE-EeecChhhccC
Confidence 45555544568999999999999999998 8899984 678777776511 0133 56788888888
Q ss_pred chh
Q 043574 83 SSW 85 (530)
Q Consensus 83 tsv 85 (530)
+++
T Consensus 92 ~~~ 94 (200)
T cd03217 92 VKN 94 (200)
T ss_pred ccH
Confidence 665
No 312
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.46 E-value=7.2e-08 Score=100.60 Aligned_cols=71 Identities=23% Similarity=0.130 Sum_probs=50.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-----------eccccCCCCCCC--CCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-----------AESIKDHHPQHN--QSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-----------~~~Ig~mvfQ~~--nLF 80 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.. ++|+++++ + ++.++ ++||++ .+|
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLl--k~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~l~ 376 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTG--LALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQ-VVFQDPNSSLN 376 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHH--HHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceE-EEEeCchhhcC
Confidence 34444333458999999999999999998 88888874 77777664 1 11234 667886 588
Q ss_pred cc-chhccCCCC
Q 043574 81 PW-SSWSNCEPP 91 (530)
Q Consensus 81 PH-tsveNValp 91 (530)
|. ++.+|+.++
T Consensus 377 ~~~tv~e~l~~~ 388 (529)
T PRK15134 377 PRLNVLQIIEEG 388 (529)
T ss_pred CcccHHHHHHHH
Confidence 98 555998653
No 313
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.46 E-value=4.2e-07 Score=98.11 Aligned_cols=147 Identities=22% Similarity=0.249 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE------Ee-----ccccCCCCCCCCCCccchhccCCC-CCh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD------FA-----ESIKDHHPQHNQSFPWSSWSNCEP-PTL 93 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id------l~-----~~Ig~mvfQ~~nLFPHtsveNVal-p~~ 93 (530)
..|+.++|+||||+|||||. |++-+.-.|.+|++++| ++ +.|| ..||+-.|||-|+.|||+= ...
T Consensus 360 ~~G~~lgIIGPSgSGKSTLa--R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG-YLPQdVeLF~GTIaeNIaRf~~~ 436 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLA--RLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG-YLPQDVELFDGTIAENIARFGEE 436 (580)
T ss_pred cCCceEEEECCCCccHHHHH--HHHHcccccCCCcEEecchhhhcCCHHHhccccC-cCcccceecCCcHHHHHHhcccc
Confidence 47889999999999999998 99999999999999999 33 3444 6689999999999999965 223
Q ss_pred hhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccc---cccccCCcchhhHHHHHHHHhhc
Q 043574 94 SNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKV---KNAVSDKVSGSILWERAVYALSA 170 (530)
Q Consensus 94 ~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~---~~~~~~~~~~~~lw~rav~a~s~ 170 (530)
.|.++-+|++= --|+|.-.-|+=.++...+ -+..|++----.==.||+|.
T Consensus 437 ~d~~kIieAA~------------------------lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG--- 489 (580)
T COG4618 437 ADPEKVIEAAR------------------------LAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG--- 489 (580)
T ss_pred CCHHHHHHHHH------------------------HcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC---
Confidence 33244444321 1123333333333333221 12344444444455677765
Q ss_pred ccccccchhhhhcccCCCccChhHHHHHHHHHHHHHHH
Q 043574 171 RVNAKEIDGVLELRENGKRLSLEEETYLREGLVGLKLA 208 (530)
Q Consensus 171 ~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l~la 208 (530)
--+++=+.|-..||..|-.....+|+.++|-.
T Consensus 490 ------~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r 521 (580)
T COG4618 490 ------DPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521 (580)
T ss_pred ------CCcEEEecCCCCCcchhHHHHHHHHHHHHHHc
Confidence 13566677866678888667778888877643
No 314
>PLN03130 ABC transporter C family member; Provisional
Probab=98.45 E-value=1.4e-07 Score=111.58 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=63.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCC-ceEEEEEeccccCCCCCCCCCCccchhccCCCCChhh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPH-LTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPTLSN 95 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~-Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~~~d 95 (530)
+|++....-.+|+.++|+||||||||||+ +++-+.-++.+ |++ .++..|+ .++|++-||.-|+.|||.++..-+
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl--~lLlG~~~~~~GG~I--~l~~~Ia-yv~Q~p~LfngTIreNI~fg~~~d 706 (1622)
T PLN03130 632 TLSNINLDVPVGSLVAIVGSTGEGKTSLI--SAMLGELPPRSDASV--VIRGTVA-YVPQVSWIFNATVRDNILFGSPFD 706 (1622)
T ss_pred eeeceeEEecCCCEEEEECCCCCCHHHHH--HHHHHhhccCCCceE--EEcCeEE-EEcCccccCCCCHHHHHhCCCccc
Confidence 46666666679999999999999999997 77777777775 454 4566777 889999999999999999976222
Q ss_pred HHHHHHHHHH
Q 043574 96 CKAQLETCLE 105 (530)
Q Consensus 96 ~r~r~e~aLE 105 (530)
+++.+++++
T Consensus 707 -~e~y~~vl~ 715 (1622)
T PLN03130 707 -PERYERAID 715 (1622)
T ss_pred -HHHHHHHHH
Confidence 334444443
No 315
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.44 E-value=1e-07 Score=90.39 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=48.8
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC----CCceEEEE---E-----e-ccccCCCCCCCC-CC-c
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE----PHLTGYVD---F-----A-ESIKDHHPQHNQ-SF-P 81 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~----~~Gtg~Id---l-----~-~~Ig~mvfQ~~n-LF-P 81 (530)
+|++....-..|+.++|.||||+|||||+ +++.++..+ ++|+++++ + . +.++ ++||+.. .| |
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~-~v~q~~~~~~~~ 94 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTC--AAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA-TIMQNPRSAFNP 94 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCCcCCEEEECCeeccccccccceEE-EEecCCccccCc
Confidence 45666655678999999999999999998 999999877 77777764 1 1 2344 6678764 33 4
Q ss_pred cchh-ccC
Q 043574 82 WSSW-SNC 88 (530)
Q Consensus 82 Htsv-eNV 88 (530)
..++ +|+
T Consensus 95 ~~~~~~~~ 102 (254)
T PRK10418 95 LHTMHTHA 102 (254)
T ss_pred cccHHHHH
Confidence 4333 554
No 316
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.44 E-value=1e-07 Score=111.68 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=94.6
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccch
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHts 84 (530)
.+|++..-.-..|+.++|+|+||+|||||+ +++-++.. .+|+++|| +++.|+ ++||++-||+-|+
T Consensus 1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl--~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is-~IpQdp~LF~GTI 1308 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLL--SALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG-VIPQKVFIFSGTF 1308 (1490)
T ss_pred ceeeccEEEEcCCCEEEEECCCCCCHHHHH--HHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE-EEeCCCccCccCH
Confidence 466666665679999999999999999997 77777765 67888887 223344 7789999999999
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 85 WSNCEPPTLSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 85 veNValp~~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
.+||.+..... .+++.++|+...- .+....+ -.||||-+.+ ++. +.|.+----.-..||
T Consensus 1309 R~NLdp~~~~t-deei~~aL~~~~L----------~~~i~~l--p~GLdt~v~e--~G~------nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1309 RKNLDPYEQWS-DEEIWKVAEEVGL----------KSVIEQF--PDKLDFVLVD--GGY------VLSNGHKQLMCLARS 1367 (1490)
T ss_pred HHHhCcccCCC-HHHHHHHHHHCCC----------HHHHHhC--cccccccccc--CCC------cCCHHHHHHHHHHHH
Confidence 99997643211 3456666654311 2222222 2477775532 111 123232223345666
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLV 203 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~ 203 (530)
++-= ..+|=+.|=+.++..+-..-+++.+.
T Consensus 1368 LLr~---------~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1368 ILSK---------AKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred HhCC---------CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 6531 23555666666666665555555443
No 317
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.44 E-value=2.2e-07 Score=89.94 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGY 62 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~ 62 (530)
+|++.. .-..|+.++|.||||+|||||+ +++.++.+++.|+++
T Consensus 16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLl--k~l~Gl~~p~~G~I~ 58 (255)
T cd03236 16 KLHRLP-VPREGQVLGLVGPNGIGKSTAL--KILAGKLKPNLGKFD 58 (255)
T ss_pred hhhcCC-CCCCCCEEEEECCCCCCHHHHH--HHHhCCcCCCCceEe
Confidence 555554 3578999999999999999998 999999999977774
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.44 E-value=6.2e-08 Score=117.31 Aligned_cols=79 Identities=25% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-------eccccCCCCCCCCCCcc-chhccCCCCC--
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-------AESIKDHHPQHNQSFPW-SSWSNCEPPT-- 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-------~~~Ig~mvfQ~~nLFPH-tsveNValp~-- 92 (530)
..|++++|.||||||||||+ +++.|+..|++|+++++ + ++.++ +.||++.+||+ ++.||+.++.
T Consensus 954 ~~Gei~aLLG~NGAGKSTLL--kiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG-~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 954 YENQITAFLGHNGAGKTTTL--SILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG-MCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred cCCcEEEEECCCCChHHHHH--HHHhcCCCCCceEEEECCEECcchHHHHhhcEE-EEecCCcCCCCCCHHHHHHHHHHh
Confidence 47899999999999999998 99999999998888875 1 12344 67899999999 4559998732
Q ss_pred ----hhhHHHHHHHHHHHH
Q 043574 93 ----LSNCKAQLETCLESM 107 (530)
Q Consensus 93 ----~~d~r~r~e~aLE~~ 107 (530)
.++.+++++++|+.+
T Consensus 1031 kg~~~~~~~~~v~~lL~~v 1049 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDT 1049 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHc
Confidence 234466788888764
No 319
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.43 E-value=8e-08 Score=100.30 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=49.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEE---Ee------------ccccCCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVD---FA------------ESIKDHHPQH 76 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Id---l~------------~~Ig~mvfQ~ 76 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+ ++|+++++ +. +.++ ++||+
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl--~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig-~v~Q~ 100 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTA--LSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIA-MIFQE 100 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHH--HHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceE-EEecC
Confidence 44554444458999999999999999998 888888765 56777664 10 1244 66898
Q ss_pred CC--CCccchh-ccCC
Q 043574 77 NQ--SFPWSSW-SNCE 89 (530)
Q Consensus 77 ~n--LFPHtsv-eNVa 89 (530)
+. ++|.+++ +|+.
T Consensus 101 ~~~~~~~~~~~~~~~~ 116 (529)
T PRK15134 101 PMVSLNPLHTLEKQLY 116 (529)
T ss_pred chhhcCchhhHHHHHH
Confidence 64 6777555 6664
No 320
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.5e-07 Score=101.78 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=61.1
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE------Ee-----ccccCCCCCCCCCCccch
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD------FA-----ESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id------l~-----~~Ig~mvfQ~~nLFPHts 84 (530)
.+|+|+.-.-..|+-++|+||||||||||+ .++.+.-++++|++.+. ++ +.|. +.+|...||.-|.
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTll--qLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~-vl~Qr~hlF~~Tl 428 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLL--QLLAGAWDPQQGSITLNGVEIASLDEQALRETIS-VLTQRVHLFSGTL 428 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHH--HHHHhccCCCCCeeeECCcChhhCChhhHHHHHh-hhccchHHHHHHH
Confidence 377888877789999999999999999998 88888889998887766 22 1233 6779999999999
Q ss_pred hccCCCCC
Q 043574 85 WSNCEPPT 92 (530)
Q Consensus 85 veNValp~ 92 (530)
.+|+.+..
T Consensus 429 r~NL~lA~ 436 (573)
T COG4987 429 RDNLRLAN 436 (573)
T ss_pred HHHHhhcC
Confidence 99999944
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.43 E-value=1.3e-07 Score=101.60 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=52.5
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCC-CCCcc-chhccCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHN-QSFPW-SSWSNCEPP 91 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~-nLFPH-tsveNValp 91 (530)
+++..-.-..|+.++|+||||||||||+ +++.++..|++|++++.-...|+ +++|+. .++|+ ++.+|+.++
T Consensus 335 l~~vsl~i~~Ge~~~l~G~NGsGKSTLl--k~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~l~~~~tv~e~l~~~ 407 (635)
T PRK11147 335 VKDFSAQVQRGDKIALIGPNGCGKTTLL--KLMLGQLQADSGRIHCGTKLEVA-YFDQHRAELDPEKTVMDNLAEG 407 (635)
T ss_pred EcCcEEEEcCCCEEEEECCCCCcHHHHH--HHHhCCCCCCCcEEEECCCcEEE-EEeCcccccCCCCCHHHHHHhh
Confidence 3333333358899999999999999998 99999988897777653112355 678875 68998 555998663
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=98.42 E-value=2.2e-07 Score=100.00 Aligned_cols=60 Identities=23% Similarity=0.128 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
..|++++|.||||+|||||+ +++.++..|++|+++++ ..++ +.||+..++++ ++.+|+.+
T Consensus 363 ~~Geiv~l~G~NGsGKSTLl--k~L~Gl~~p~~G~I~~~--~~i~-y~~Q~~~~~~~~tv~e~l~~ 423 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFA--KLLAGVLKPDEGEVDPE--LKIS-YKPQYIKPDYDGTVEDLLRS 423 (590)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEEe--eeEE-EecccccCCCCCcHHHHHHH
Confidence 58899999999999999999 99999999997877765 3566 78999888888 44488755
No 323
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.40 E-value=1.2e-07 Score=102.32 Aligned_cols=87 Identities=22% Similarity=0.184 Sum_probs=61.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCCcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLFPH 82 (530)
|++..-.-..|+.++|+||||+|||||+ +++.++..+++|++.++-. +.++ ++||++.+||+
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl--~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~-~v~q~~~l~~~ 100 (648)
T PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLM--NILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFG-FIFQRYHLLSH 100 (648)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEE-EEeCCcccCCC
Confidence 4443333458999999999999999999 9999999999787776511 1234 66899999999
Q ss_pred -chhccCCCCC------hhhHHHHHHHHHHHH
Q 043574 83 -SSWSNCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 83 -tsveNValp~------~~d~r~r~e~aLE~~ 107 (530)
++.||+.++. .++.++++.++++.+
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~l 132 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRL 132 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 5569987521 223345666666654
No 324
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.40 E-value=1.6e-07 Score=109.71 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=62.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC---CCCceEEEE-------EeccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK---EPHLTGYVD-------FAESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~---~~~Gtg~Id-------l~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++-.-.-..|+.++|+||||+|||||+ +++.+... +.+|+++++ +++.++ .++|+..++|. |+.
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL--~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~-yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLL--NVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG-YVQQQDLHLPTSTVR 854 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHH--HHHhCCCCCCCcceeEEEECCEECChhhhccee-eecccccCCCCCCHH
Confidence 55555555568899999999999999998 88888765 455666664 112334 77899889998 555
Q ss_pred ccCCCC------C---hhhHHHHHHHHHHHH
Q 043574 86 SNCEPP------T---LSNCKAQLETCLESM 107 (530)
Q Consensus 86 eNValp------~---~~d~r~r~e~aLE~~ 107 (530)
||+.+. . .++.+++++++|+.+
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l 885 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLL 885 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 999862 1 234456788888765
No 325
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.39 E-value=1.6e-07 Score=92.48 Aligned_cols=130 Identities=20% Similarity=0.151 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc-----------CCCCCCCCCCccchh-ccCCCCC-
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK-----------DHHPQHNQSFPWSSW-SNCEPPT- 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig-----------~mvfQ~~nLFPHtsv-eNValp~- 92 (530)
..|.++.|+||+|+|||||| .++.++-+.++|+++|+=. +++ ....|++++--.+++ +=++|++
T Consensus 25 ~~g~iTs~IGPNGAGKSTLL--S~~sRL~~~d~G~i~i~g~-~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 25 PKGGITSIIGPNGAGKSTLL--SMMSRLLKKDSGEITIDGL-ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred cCCceeEEECCCCccHHHHH--HHHHHhccccCceEEEeee-ecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence 47899999999999999999 9999999999888888722 232 123388888888555 8888854
Q ss_pred -------hhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHH
Q 043574 93 -------LSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAV 165 (530)
Q Consensus 93 -------~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav 165 (530)
.++.++.+.+++|-|--. .-=.|.|.+ -|++ ==+||.
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~-----------------------~l~dryLd~-LSGG------------QrQRAf 145 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLE-----------------------DLSDRYLDE-LSGG------------QRQRAF 145 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhccc-----------------------chHHHhHHh-cccc------------hhhhhh
Confidence 333489999999877321 111233321 1111 137999
Q ss_pred HHhhcccccccchhhhhcccCCCccChhHHHHH
Q 043574 166 YALSARVNAKEIDGVLELRENGKRLSLEEETYL 198 (530)
Q Consensus 166 ~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~ 198 (530)
.||- -+.|.|.++ +.|--|||.|..+.-+
T Consensus 146 IAMV---laQdTdyvl-LDEPLNNLDmkHsv~i 174 (252)
T COG4604 146 IAMV---LAQDTDYVL-LDEPLNNLDMKHSVQI 174 (252)
T ss_pred hhee---eeccCcEEE-ecCcccccchHHHHHH
Confidence 9974 455677766 5666888888765443
No 326
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.36 E-value=3.7e-07 Score=94.15 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=38.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl--~~l~G~~~p~~G~i~~~ 63 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALA--RALAGELPLLSGERQSQ 63 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHH--HHHhccCCCCCceEEEC
Confidence 55555544568999999999999999998 99999998998887764
No 327
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.35 E-value=1.7e-07 Score=87.68 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=55.4
Q ss_pred hhhHH---HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccc-hhc
Q 043574 11 RPLLE---TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWS-SWS 86 (530)
Q Consensus 11 rp~le---~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHt-sve 86 (530)
-|++| .|+|+.... .+++++|.||||+|||||+ |++.+.....+...+|.- . .+++|...+|++. +.+
T Consensus 7 hp~~~~~~~v~n~i~l~--~g~~~~ltGpNg~GKSTll--r~i~~~~~l~~~G~~v~a-~---~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 7 HPLIGREKRVANDIDME--KKNGILITGSNMSGKSTFL--RTIGVNVILAQAGAPVCA-S---SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecCCCeecceEEEc--CCcEEEEECCCCCChHHHH--HHHHHHHHHHHcCCEEec-C---ccCcccceEEEeccchh
Confidence 46775 334443322 3589999999999999997 777653211111112211 1 2567888999994 559
Q ss_pred cCCCCC---hhhHHHHHHHHHHHHH
Q 043574 87 NCEPPT---LSNCKAQLETCLESMA 108 (530)
Q Consensus 87 NValp~---~~d~r~r~e~aLE~~a 108 (530)
|+.++. ..+ .++++++|+.+.
T Consensus 79 ~l~~~~s~~~~e-~~~~~~iL~~~~ 102 (199)
T cd03283 79 DLRDGISYFYAE-LRRLKEIVEKAK 102 (199)
T ss_pred ccccccChHHHH-HHHHHHHHHhcc
Confidence 998854 334 356777777654
No 328
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.34 E-value=5.5e-07 Score=94.05 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=46.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe------------ccccCCCCCC---CCCCcc-chhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA------------ESIKDHHPQH---NQSFPW-SSWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~------------~~Ig~mvfQ~---~nLFPH-tsveNVa 89 (530)
..|+.++|+||||||||||+ +++.++..+++|+++++=. +.++ ++||+ +++||. ++.+|+.
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLl--~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 287 RAGEILGLAGVVGAGRTELA--ETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV-YLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred cCCcEEEEECCCCCCHHHHH--HHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE-ECCCChhhCCccCCCcHHHHHH
Confidence 58899999999999999998 9999998888777766411 1233 56786 468888 5558874
No 329
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.30 E-value=7.2e-07 Score=86.63 Aligned_cols=60 Identities=13% Similarity=-0.055 Sum_probs=45.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
..|+.++|+||||+|||||+ +++.++..+++|++.++- .+. ..+|+..+++. ++.+|+.+
T Consensus 48 ~~Ge~~~liG~NGsGKSTLl--k~L~Gl~~p~~G~I~~~g--~~~-~~~~~~~~~~~~tv~enl~~ 108 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLS--NIIGGSLSPTVGKVDRNG--EVS-VIAISAGLSGQLTGIENIEF 108 (264)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCcCCCceEEEECC--EEe-EEecccCCCCCCcHHHHHHH
Confidence 38899999999999999998 999999889977665542 222 33566667777 44488865
No 330
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.30 E-value=4e-07 Score=91.81 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=67.2
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee----ccccCCCCCCCCCCccchh-ccCCC
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA----ESIKDHHPQHNQSFPWSSW-SNCEP 90 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~----~~Ig~mvfQ~~nLFPHtsv-eNVal 90 (530)
++..-.-..|+++++.||+|+||||.+ |++-++-.++.|.+.++ +. ..|| ..|.+-.|||.+++ +-+.+
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtf--RmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPEERGLy~k~tv~dql~y 95 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTF--RMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPEERGLYPKMTVEDQLKY 95 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchH--HHHhccCCccCceEEEcCcchhhhhhhhcc-cChhhhccCccCcHHHHHHH
Confidence 343334468999999999999999998 88889999995555544 11 2455 77899999999555 77766
Q ss_pred -CC-----hhhHHHHHHHHHHHHHH
Q 043574 91 -PT-----LSNCKAQLETCLESMAE 109 (530)
Q Consensus 91 -p~-----~~d~r~r~e~aLE~~a~ 109 (530)
+. +.+++.++..+||.+-.
T Consensus 96 la~LkGm~~~e~~~~~~~wLer~~i 120 (300)
T COG4152 96 LAELKGMPKAEIQKKLQAWLERLEI 120 (300)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhccc
Confidence 22 77789999999998754
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.30 E-value=5.3e-07 Score=105.99 Aligned_cols=71 Identities=18% Similarity=0.023 Sum_probs=57.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+.+|++++ +..|+ .++|++.+|+-++.|||.++.
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl--~~l~g~~~~~~G~i~~--~g~i~-yv~Q~~~l~~~Ti~eNI~~g~ 723 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLL--SALLAEMDKVEGHVHM--KGSVA-YVPQQAWIQNDSLRENILFGK 723 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCccCCcEEEE--CCEEE-EEcCCccccCCcHHHHhhcCC
Confidence 45555555568999999999999999998 8888888888666654 44566 789999999878889999965
No 332
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.29 E-value=6.6e-07 Score=92.54 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=49.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecc-------------ccCCCCCC---CCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAES-------------IKDHHPQH---NQSF 80 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~-------------Ig~mvfQ~---~nLF 80 (530)
+|++....-..|+.++|+||||||||||+ +++.++..+++|+++++= ++ ++ ++||+ .++|
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~~~i~-~~~q~~~~~~~~ 338 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIV--ETLFGIREKSAGTITLHG-KKINNHNANEAINHGFA-LVTEERRSTGIY 338 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHH--HHHcCCCcCCccEEEECC-EECCCCCHHHHHHCCCE-EcCCchhhCCcc
Confidence 45554444568999999999999999998 999999999977777641 11 33 55676 4688
Q ss_pred ccchh-cc
Q 043574 81 PWSSW-SN 87 (530)
Q Consensus 81 PHtsv-eN 87 (530)
|..++ +|
T Consensus 339 ~~~~~~~~ 346 (491)
T PRK10982 339 AYLDIGFN 346 (491)
T ss_pred cCCcHHHh
Confidence 88443 55
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=4.6e-07 Score=97.85 Aligned_cols=63 Identities=17% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCC--CCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHN--QSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~--nLFPH 82 (530)
+|++....-..|+.++|+||||||||||+ +++.+...|++|++++.-...++ +.+|+. .++|.
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLl--k~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~ 391 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLI--KLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRAD 391 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCcc
Confidence 34444444458999999999999999998 99999988997777664223456 667863 34444
No 334
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.29 E-value=3.6e-07 Score=85.43 Aligned_cols=46 Identities=26% Similarity=0.218 Sum_probs=37.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~Gtg~Id 64 (530)
++++....-..|+.++|+||||+|||||+ +++.++. .+++|+++++
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~~~~~G~i~~~ 63 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLS--ATLAGREDYEVTGGTVEFK 63 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHH--HHHcCCccCCCCceEEEEC
Confidence 56665555568999999999999999998 8999984 5777777665
No 335
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.28 E-value=2.2e-06 Score=92.20 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=106.3
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCCCC--hhhHHHHHH
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEPPT--LSNCKAQLE 101 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNValp~--~~d~r~r~e 101 (530)
-..|+.++|+|++|+|||||+ +++.+...++.|++...-...++ ..+|+..+.+. ++.+.|..+. ..++.++.+
T Consensus 26 ~~~G~riGLvG~NGaGKSTLL--kilaG~~~~~~G~i~~~~~~~v~-~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~ 102 (530)
T COG0488 26 LNPGERIGLVGRNGAGKSTLL--KILAGELEPDSGEVTRPKGLRVG-YLSQEPPLDPEKTVLDYVIEGFGELRELLAELE 102 (530)
T ss_pred eCCCCEEEEECCCCCCHHHHH--HHHcCCCcCCCCeEeecCCceEE-EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHH
Confidence 457899999999999999999 99999999996665544223455 67899999988 6667776655 334445555
Q ss_pred HHHHHHHHH-hHHhcccchhHHHHHhhhhccchHHHHHHHhccccccc----ccccCCcchhhHHHHHHHHhhccccccc
Q 043574 102 TCLESMAER-GIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVK----NAVSDKVSGSILWERAVYALSARVNAKE 176 (530)
Q Consensus 102 ~aLE~~a~~-~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~----~~~~~~~~~~~lw~rav~a~s~~~~~~e 176 (530)
++.+.|+.. ....+.+ .+.|+.+.- +.++.....++.+-+.+.. +..|++--..+.=.+|++. +.
T Consensus 103 ~~~~~~~~~~~~~~~~l--~~~~~~~~~-~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~-----~p-- 172 (530)
T COG0488 103 EAYALLADPDDELLAEL--EALLEELDG-WTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE-----EP-- 172 (530)
T ss_pred HHHHhcccchhHHHHHH--HHHHHhhcc-cchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhc-----CC--
Confidence 555444332 1111111 233444433 5667777777776544432 1345554455555555554 22
Q ss_pred chhhhhcccCCCccChhHHHHHHHHHHH
Q 043574 177 IDGVLELRENGKRLSLEEETYLREGLVG 204 (530)
Q Consensus 177 ~~~~~~~~ek~~~~s~ee~~y~~e~~~~ 204 (530)
| +|=+.|-+|.|..|-+.++++-+..
T Consensus 173 -D-lLLLDEPTNHLD~~~i~WLe~~L~~ 198 (530)
T COG0488 173 -D-LLLLDEPTNHLDLESIEWLEDYLKR 198 (530)
T ss_pred -C-EEEEcCCCcccCHHHHHHHHHHHHh
Confidence 2 6778898999999999998876654
No 336
>PTZ00243 ABC transporter; Provisional
Probab=98.27 E-value=6.2e-07 Score=105.87 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=56.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
+|++..-.-..|+.++|+||+|||||||+ +++.+...+++|++. ++..|+ .+||++.+|+-++.|||.++.
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL--~~i~G~~~~~~G~i~--~~~~i~-yv~Q~~~l~~~Tv~enI~~~~ 745 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLL--QSLLSQFEISEGRVW--AERSIA-YVPQQAWIMNATVRGNILFFD 745 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHH--HHHhcCCCCCCcEEE--ECCeEE-EEeCCCccCCCcHHHHHHcCC
Confidence 34443333458999999999999999998 888888888866655 446677 889999999878889999865
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.27 E-value=7e-07 Score=104.91 Aligned_cols=71 Identities=21% Similarity=0.150 Sum_probs=58.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
+|++..-.-..|+.++|+||+|||||||+ +++.++..+.+|++.++ ..|+ .++|++.+|+-++.|||.++.
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl--~~l~G~~~~~~G~i~~~--g~ia-yv~Q~~~l~~~Ti~eNI~~g~ 511 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLL--MMIMGELEPSEGKIKHS--GRIS-FSPQTSWIMPGTIKDNIIFGL 511 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEEC--CEEE-EEeCCCccCCccHHHHHHhcc
Confidence 56665555568999999999999999998 88889888887766643 3466 789999999987779999865
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.27 E-value=4.1e-07 Score=106.31 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=51.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC----CCCCceEEEE-E---------eccccCCCCCCCCCCcc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN----KEPHLTGYVD-F---------AESIKDHHPQHNQSFPW 82 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~----~~~~Gtg~Id-l---------~~~Ig~mvfQ~~nLFPH 82 (530)
+|++..-.-..|+.++|+||||+|||||+ +++.+.. .+.+|+++++ . ++.++ .++|+..+||+
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLL--k~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~-yv~Q~d~~~~~ 152 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLL--KTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVV-YNAETDVHFPH 152 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHH--HHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeE-EeccccccCCC
Confidence 55555555568999999999999999998 8888764 3455666554 1 11233 66899999999
Q ss_pred chh-ccCCC
Q 043574 83 SSW-SNCEP 90 (530)
Q Consensus 83 tsv-eNVal 90 (530)
+++ ||+.+
T Consensus 153 lTV~E~l~f 161 (1394)
T TIGR00956 153 LTVGETLDF 161 (1394)
T ss_pred CCHHHHHHH
Confidence 555 99976
No 339
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=3.3e-07 Score=89.07 Aligned_cols=43 Identities=28% Similarity=0.317 Sum_probs=33.2
Q ss_pred hhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 20 NHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 20 ~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+-..--..|++++|.||||+|||||+ |++=+-..+++|.+.|.
T Consensus 29 ~vslsV~aGECvvL~G~SG~GKStll--r~LYaNY~~d~G~I~v~ 71 (235)
T COG4778 29 NVSLSVNAGECVVLHGPSGSGKSTLL--RSLYANYLPDEGQILVR 71 (235)
T ss_pred ceeEEecCccEEEeeCCCCCcHHHHH--HHHHhccCCCCceEEEE
Confidence 33333468999999999999999996 55555567887887776
No 340
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.25 E-value=5.5e-07 Score=109.38 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-------eccccCCCCCCCCCCccchh-ccCCCCC--
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-------AESIKDHHPQHNQSFPWSSW-SNCEPPT-- 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-------~~~Ig~mvfQ~~nLFPHtsv-eNValp~-- 92 (530)
..|++++|.||||+|||||+ +++.|+..+++|+++++ + ++.|+ ..||+..+++++++ ||+.+..
T Consensus 1963 ~~GEi~gLLG~NGAGKTTLl--kmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG-y~pQ~~~L~~~LTv~E~L~l~a~l 2039 (2272)
T TIGR01257 1963 RPGECFGLLGVNGAGKTTTF--KMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-YCPQFDAIDDLLTGREHLYLYARL 2039 (2272)
T ss_pred cCCcEEEEECCCCCcHHHHH--HHHhCCCCCCccEEEECCEECcchHHHHhhhEE-EEeccccCCCCCCHHHHHHHHHHh
Confidence 47899999999999999999 99999999998888875 1 12355 67899999999444 9987621
Q ss_pred ----hhhHHHHHHHHHHHH
Q 043574 93 ----LSNCKAQLETCLESM 107 (530)
Q Consensus 93 ----~~d~r~r~e~aLE~~ 107 (530)
.++.+++++++|+.+
T Consensus 2040 ~g~~~~~~~~~v~~lLe~l 2058 (2272)
T TIGR01257 2040 RGVPAEEIEKVANWSIQSL 2058 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHc
Confidence 223344555555543
No 341
>PLN03140 ABC transporter G family member; Provisional
Probab=98.24 E-value=5e-07 Score=106.34 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=61.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC--CCceEEEE---E-----eccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE--PHLTGYVD---F-----AESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~--~~Gtg~Id---l-----~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|++..-.-..|++++|.||||||||||+ +++.+...+ .+|++.++ . .+.++ .++|+..++|+ |+.
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL--~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~ig-yv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLM--DVLAGRKTGGYIEGDIRISGFPKKQETFARISG-YCEQNDIHSPQVTVR 971 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHH--HHHcCCCCCCcccceEEECCccCChHHhhhheE-EEccccccCCCCcHH
Confidence 56665555568999999999999999998 888887653 34555443 1 11233 67899999999 555
Q ss_pred ccCCCC------C---hhhHHHHHHHHHHHHH
Q 043574 86 SNCEPP------T---LSNCKAQLETCLESMA 108 (530)
Q Consensus 86 eNValp------~---~~d~r~r~e~aLE~~a 108 (530)
||+.++ . .++.++++++.|+.+-
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 998762 1 2333456778777653
No 342
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.21 E-value=5.4e-07 Score=93.00 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=33.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-CCceEEEE
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-PHLTGYVD 64 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-~~Gtg~Id 64 (530)
|++..-.-..|+.++|+||||||||||+ +++.++..+ ++|+++++
T Consensus 276 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl--~~l~G~~~~~~~G~i~~~ 321 (490)
T PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLL--SLITGDHPQGYSNDLTLF 321 (490)
T ss_pred EeeceEEEcCCCEEEEECCCCCCHHHHH--HHHcCCCCcccCCeEEEe
Confidence 3333333358899999999999999998 888887544 46777764
No 343
>PLN03140 ABC transporter G family member; Provisional
Probab=98.20 E-value=5.4e-07 Score=106.11 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC---CceEEEE---E-----eccccCCCCCCCCCCccc
Q 043574 15 ETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP---HLTGYVD---F-----AESIKDHHPQHNQSFPWS 83 (530)
Q Consensus 15 e~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~---~Gtg~Id---l-----~~~Ig~mvfQ~~nLFPHt 83 (530)
.+||++..-.-..|+.++|.||||||||||+ +++.+...++ +|++.++ + ++.++ .++|+..+||++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLL--k~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLL--LALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSA-YISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHH--HHHhCCCCCCCcceeEEEECCEechhhcccceeE-EecccccCCCcC
Confidence 3466666666678999999999999999998 8888887665 5665553 1 12233 667999999995
Q ss_pred hh-ccCCC
Q 043574 84 SW-SNCEP 90 (530)
Q Consensus 84 sv-eNVal 90 (530)
++ ||+.+
T Consensus 255 TV~EtL~f 262 (1470)
T PLN03140 255 TVKETLDF 262 (1470)
T ss_pred cHHHHHHH
Confidence 55 99977
No 344
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.3e-06 Score=92.95 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=63.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++-...-..|+.++++||||+||||++ |++=+|-++++|.+.+| +++.|| ++||+.-||-.+..
T Consensus 278 iL~~isf~i~~g~tvAiVg~SG~gKsTI~--rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg-~VPQDtvLFNDti~ 354 (497)
T COG5265 278 ILNGISFTIPLGKTVAIVGESGAGKSTIL--RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG-IVPQDTVLFNDTIA 354 (497)
T ss_pred hhcCccccccCccEEEEEeCCCCcHHHHH--HHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC-cCcccceehhhhHH
Confidence 56666666678899999999999999987 99999999999999998 334556 99999999999999
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
.|+.++.
T Consensus 355 yni~ygr 361 (497)
T COG5265 355 YNIKYGR 361 (497)
T ss_pred HHHhccC
Confidence 9999955
No 345
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.19 E-value=1.4e-06 Score=80.97 Aligned_cols=49 Identities=24% Similarity=0.164 Sum_probs=38.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQ 78 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~n 78 (530)
..|+.++|+||||+|||||+ +++.++..+++|++.++- .+++ ..||+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g-~~i~-~~~q~~~ 71 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAV--KILAGQLIPNGDNDEWDG-ITPV-YKPQYID 71 (177)
T ss_pred CCCCEEEEECCCCChHHHHH--HHHHcCCCCCCcEEEECC-EEEE-EEcccCC
Confidence 68899999999999999998 999999999966665431 3455 5567543
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.16 E-value=1.7e-06 Score=76.55 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=42.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQ 75 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ 75 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+.+|+++++-...++ ++||
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl--~~l~G~~~~~~G~i~~~~~~~i~-~~~~ 70 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLL--KLIAGELEPDEGIVTWGSTVKIG-YFEQ 70 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHH--HHHcCCCCCCceEEEECCeEEEE-EEcc
Confidence 34444444468999999999999999998 99999999997777765333444 5555
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.15 E-value=1.1e-06 Score=78.76 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=38.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl--~~i~G~~~~~~G~v~~~ 60 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLM--KILSGLYKPDSGEILVD 60 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEEC
Confidence 45555555568999999999999999998 99999999987776654
No 348
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.14 E-value=1.6e-06 Score=81.76 Aligned_cols=46 Identities=24% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++
T Consensus 18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl--~~l~G~~~~~~G~i~~~ 63 (253)
T TIGR02323 18 GCRDVSFDLYPGEVLGIVGESGSGKSTLL--GCLAGRLAPDHGTATYI 63 (253)
T ss_pred EeecceEEEeCCcEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEEe
Confidence 34555554568999999999999999999 99999999998887765
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=98.11 E-value=2.1e-06 Score=92.61 Aligned_cols=43 Identities=23% Similarity=0.133 Sum_probs=35.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGY 62 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~ 62 (530)
+|++.. ....|++++|+||||+|||||+ +++.++..|+.|++.
T Consensus 89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLl--kiL~G~l~p~~G~i~ 131 (590)
T PRK13409 89 KLYGLP-IPKEGKVTGILGPNGIGKTTAV--KILSGELIPNLGDYE 131 (590)
T ss_pred eEecCC-cCCCCCEEEEECCCCCCHHHHH--HHHhCCccCCCcccc
Confidence 344444 4578999999999999999999 999999999977764
No 350
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.11 E-value=1.7e-06 Score=78.20 Aligned_cols=46 Identities=30% Similarity=0.377 Sum_probs=37.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++++..-.-..|+.++|.||||+|||||+ +++.++..+++|+++++
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl--~~i~G~~~~~~G~v~~~ 59 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLL--KTLAGLLKPSSGEILLD 59 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEEC
Confidence 45554444568999999999999999998 99999988887766654
No 351
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.11 E-value=8.8e-07 Score=87.33 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=60.9
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc------------CCCCCCCCCCcc-chh
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK------------DHHPQHNQSFPW-SSW 85 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig------------~mvfQ~~nLFPH-tsv 85 (530)
|+..-.-..|++=+|+||+|+||||++ -++-+--+|+.|+.+++=+.++. .--||-+..|+. +++
T Consensus 22 n~ls~~v~~Gelr~lIGpNGAGKTT~m--D~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~ 99 (249)
T COG4674 22 NDLSFSVDPGELRVLIGPNGAGKTTLM--DVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR 99 (249)
T ss_pred eeeEEEecCCeEEEEECCCCCCceeee--eeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHH
Confidence 333333458899999999999999997 88888888887777766212221 133699999999 555
Q ss_pred ccCCCCC--------------hhhHHHHHHHHHHH
Q 043574 86 SNCEPPT--------------LSNCKAQLETCLES 106 (530)
Q Consensus 86 eNValp~--------------~~d~r~r~e~aLE~ 106 (530)
||+.+.. ..+-++|++++|+-
T Consensus 100 eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~ 134 (249)
T COG4674 100 ENLELALNRDKSVFASLFARLRAEERRRIDELLAT 134 (249)
T ss_pred HHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHH
Confidence 9998722 22336678877764
No 352
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.09 E-value=2.6e-06 Score=74.97 Aligned_cols=56 Identities=20% Similarity=0.081 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc-----------CCCCCCCCCCccchhccCCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK-----------DHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig-----------~mvfQ~~nLFPHtsveNValp~ 92 (530)
..++.++|.||||||||||+ +++. +|++.++- .++. -.+||+ +|+-+..+||.+|.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl--~~l~------~G~i~~~g-~di~~~~~~~~~~~~~~~~q~--lf~~ti~~Ni~~~~ 79 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELA--LELI------KRKHRLVG-DDNVEIREDSKDELIGRNPEL--GLEIRLRLNIFLIT 79 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHH--HHhh------CCeEEEee-EeHHHhhhhhcCCEEEEechh--cchhhHHhhceeee
Confidence 45789999999999999997 5543 44555541 1221 133455 88888889998844
No 353
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.01 E-value=6.3e-06 Score=82.06 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=51.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc-----------CCCCCCC-CCCccch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK-----------DHHPQHN-QSFPWSS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig-----------~mvfQ~~-nLFPHts 84 (530)
+|++..-.-+.|++++|+||+|+|||||+ +.+.+--.|++|...++= ..+. ...||+. --||-++
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlL--k~LsGel~p~~G~v~~~g-~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLL--KALSGELSPDSGEVTLNG-VPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHH--HHhhCccCCCCCeEeeCC-cChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 34455555678999999999999999998 888887788866666550 1221 1335754 4588888
Q ss_pred hccCCCCC
Q 043574 85 WSNCEPPT 92 (530)
Q Consensus 85 veNValp~ 92 (530)
.|-|.++.
T Consensus 93 ~eVV~mGr 100 (259)
T COG4559 93 QEVVQMGR 100 (259)
T ss_pred HHHHHhcc
Confidence 88777733
No 354
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.00 E-value=4e-06 Score=90.94 Aligned_cols=68 Identities=21% Similarity=0.065 Sum_probs=48.1
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
|++..-.-..|+.++|+||||+|||||+ +++.++..|++|+++++-. .. ..++...++|. ++.+|+.+
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLL--kiLaGLl~P~sGeI~I~G~-~~--~i~~~~~l~~~lTV~EnL~l 108 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLS--NLIAGVTMPNKGTVDIKGS-AA--LIAISSGLNGQLTGIENIEL 108 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHH--HHHhCCCCCCceEEEECCE-ee--eEEeccccCCCCcHHHHHHh
Confidence 4443333458999999999999999999 9999999999777665411 10 12244566777 55599876
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=4.2e-06 Score=90.57 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=46.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNC 88 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNV 88 (530)
+|++..-.-..|+.++|+||||||||||+ +++.+...|++|+++++=...++ .++|+...+..+.++.+
T Consensus 16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLL--kiL~G~~~pd~G~I~~~~~~~i~-~~~q~~~~~~~~~~~~v 84 (638)
T PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLL--ALLKNEISADGGSYTFPGNWQLA-WVNQETPALPQPALEYV 84 (638)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEecCCCEEE-EEecCCCCCCCCHHHHH
Confidence 44554444568999999999999999999 99999988997776654112233 45565333333333433
No 356
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.94 E-value=8e-06 Score=87.89 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=35.5
Q ss_pred HHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCc-eEEEE
Q 043574 14 LETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHL-TGYVD 64 (530)
Q Consensus 14 le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~G-tg~Id 64 (530)
++.+|......-..|++++||||||||||||| + .++..+++| +++++
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLL--r--~~l~~~~sGg~I~ld 65 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEIL--A--ENKRKFSEGYEFFLD 65 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHH--h--cCCCCCCCCCEEEEC
Confidence 45667666665679999999999999999996 4 566666655 46654
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=1e-05 Score=80.63 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe----ccccCCCCCCCCCCccch-hccCCC----CC--hh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA----ESIKDHHPQHNQSFPWSS-WSNCEP----PT--LS 94 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~----~~Ig~mvfQ~~nLFPHts-veNVal----p~--~~ 94 (530)
.+|+.++|+|++|+|||||+ +++.+...|++|.+.++=+ -.++ ..|| |.+| .||+-+ .. .+
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLl--kliaGi~~Pt~G~v~v~G~v~~li~lg-~Gf~-----pelTGreNi~l~~~~~G~~~~ 122 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLL--KLIAGIYKPTSGKVKVTGKVAPLIELG-AGFD-----PELTGRENIYLRGLILGLTRK 122 (249)
T ss_pred eCCCEEEEECCCCCcHHHHH--HHHhCccCCCCceEEEcceEehhhhcc-cCCC-----cccchHHHHHHHHHHhCccHH
Confidence 38899999999999999999 9999999999777666621 1122 3344 4544 499877 11 44
Q ss_pred hHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHHHHhhccccc
Q 043574 95 NCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAVYALSARVNA 174 (530)
Q Consensus 95 d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav~a~s~~~~~ 174 (530)
+..+++++..| |+-| -.++.. |. |.-.+-.-.|--|+.|...+.
T Consensus 123 ei~~~~~eIie-----------------FaEL----------G~fi~~---Pv------ktYSSGM~aRLaFsia~~~~p 166 (249)
T COG1134 123 EIDEKVDEIIE-----------------FAEL----------GDFIDQ---PV------KTYSSGMYARLAFSVATHVEP 166 (249)
T ss_pred HHHHHHHHHHH-----------------HHHH----------HHHhhC---ch------hhccHHHHHHHHHhhhhhcCC
Confidence 44444444333 2222 122222 22 333345567888888887777
Q ss_pred cc--chhhhhccc
Q 043574 175 KE--IDGVLELRE 185 (530)
Q Consensus 175 ~e--~~~~~~~~e 185 (530)
|= +|++|+-|.
T Consensus 167 dILllDEvlavGD 179 (249)
T COG1134 167 DILLLDEVLAVGD 179 (249)
T ss_pred CEEEEehhhhcCC
Confidence 63 578877775
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=2.1e-05 Score=69.30 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=35.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++++..-.-..|+.++|.||+|+|||||+ +++.+...++.|+++++
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll--~~l~g~~~~~~G~i~~~ 59 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLL--RAIAGLLKPTSGEILID 59 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCccEEEEC
Confidence 34443333457899999999999999998 88898888886666654
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=97.80 E-value=1e-05 Score=89.52 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=40.4
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHN 77 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~ 77 (530)
-..|+.++|+||||||||||+ +++.++..|++|+++++-...|+ +.+|++
T Consensus 532 i~~Ge~i~LvG~NGsGKSTLL--k~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~ 581 (718)
T PLN03073 532 IDLDSRIAMVGPNGIGKSTIL--KLISGELQPSSGTVFRSAKVRMA-VFSQHH 581 (718)
T ss_pred EcCCCEEEEECCCCCcHHHHH--HHHhCCCCCCCceEEECCceeEE-EEeccc
Confidence 358899999999999999999 99999999998877765334466 667864
No 360
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.78 E-value=1.3e-05 Score=86.44 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=37.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+|.+..-.-..|+.++|+||||||||||+ +++.++..+++|+++++
T Consensus 18 il~~is~~i~~Ge~v~LvG~NGsGKSTLL--riiaG~~~p~~G~I~~~ 63 (635)
T PRK11147 18 LLDNAELHIEDNERVCLVGRNGAGKSTLM--KILNGEVLLDDGRIIYE 63 (635)
T ss_pred eEeCcEEEECCCCEEEEECCCCCCHHHHH--HHHcCCCCCCCeEEEeC
Confidence 44444433458999999999999999999 99999999997777654
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.71 E-value=3.1e-05 Score=91.27 Aligned_cols=79 Identities=24% Similarity=0.234 Sum_probs=64.1
Q ss_pred hhhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-E----------eccccCCCCCCCCC
Q 043574 11 RPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-F----------AESIKDHHPQHNQS 79 (530)
Q Consensus 11 rp~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l----------~~~Ig~mvfQ~~nL 79 (530)
||=+..||++-.-.-..++-++|+|-.|+|||||+ ..+=++..+.+|++.|| + +..++ ..||++-|
T Consensus 1149 rp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~--~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls-IIPQdPvL 1225 (1381)
T KOG0054|consen 1149 RPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI--LALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS-IIPQDPVL 1225 (1381)
T ss_pred CCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH--HHHHHhcCccCCeEEEcCeecccccHHHHHhcCe-eeCCCCce
Confidence 67788899987777788999999999999999996 44555666678999998 2 23334 66899999
Q ss_pred CccchhccCCCCC
Q 043574 80 FPWSSWSNCEPPT 92 (530)
Q Consensus 80 FPHtsveNValp~ 92 (530)
|.-|+..|+.+-.
T Consensus 1226 FsGTvR~NLDPf~ 1238 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFD 1238 (1381)
T ss_pred ecCccccccCccc
Confidence 9999999998843
No 362
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.70 E-value=2.2e-05 Score=74.68 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..++|+||||||||||+ +.+..+
T Consensus 24 ~~~~~~IvG~NGsGKStll--~Ai~~l 48 (251)
T cd03273 24 DPQFNAITGLNGSGKSNIL--DAICFV 48 (251)
T ss_pred CCCeEEEECCCCCCHHHHH--HHHHHH
Confidence 5678999999999999997 666555
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.65 E-value=2.5e-05 Score=84.32 Aligned_cols=146 Identities=20% Similarity=0.172 Sum_probs=79.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCC-CCCcc-chhccCCCCChh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHN-QSFPW-SSWSNCEPPTLS 94 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~-nLFPH-tsveNValp~~~ 94 (530)
++.++.-.-..|+.++|+||+|+|||||+ +++.+-..+.+|++.+.-...++ ...|+. .++|. +.++++.-...+
T Consensus 337 l~~~~s~~i~~g~riaiiG~NG~GKSTLl--k~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLL--KLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred eecCceEEecCCCEEEEECCCCCCHHHHH--HHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHHHHhhCcc
Confidence 44455555568899999999999999998 77766566664444433212344 445765 55555 344555442211
Q ss_pred hHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHHHHHhhccccc
Q 043574 95 NCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERAVYALSARVNA 174 (530)
Q Consensus 95 d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav~a~s~~~~~ 174 (530)
..+..++..|.+|- .+..++..... ..|++-- .|.++|...-.+
T Consensus 414 ~~e~~~r~~L~~f~--------F~~~~~~~~v~----------------------~LSGGEk-----~Rl~La~ll~~~- 457 (530)
T COG0488 414 GDEQEVRAYLGRFG--------FTGEDQEKPVG----------------------VLSGGEK-----ARLLLAKLLLQP- 457 (530)
T ss_pred ccHHHHHHHHHHcC--------CChHHHhCchh----------------------hcCHhHH-----HHHHHHHHhccC-
Confidence 11344555555442 12222211100 0111111 244444322221
Q ss_pred ccchhhhhcccCCCccChhHHHHHHHHHHH
Q 043574 175 KEIDGVLELRENGKRLSLEEETYLREGLVG 204 (530)
Q Consensus 175 ~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~ 204 (530)
--+|=+.|-+|.|.+|-....++|+..
T Consensus 458 ---pNvLiLDEPTNhLDi~s~~aLe~aL~~ 484 (530)
T COG0488 458 ---PNLLLLDEPTNHLDIESLEALEEALLD 484 (530)
T ss_pred ---CCEEEEcCCCccCCHHHHHHHHHHHHh
Confidence 136677888999999988888887754
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=4.7e-05 Score=74.37 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|+.+.|.||+|+|||||| |++.++-.|+.|.+++.
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLL--RilaGLl~p~~G~v~~~ 62 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLL--RILAGLLRPDAGEVYWQ 62 (209)
T ss_pred cCCCEEEEECCCCCcHHHHH--HHHHcccCCCCCeEEec
Confidence 48899999999999999999 99999999996666654
No 365
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=5.6e-05 Score=75.54 Aligned_cols=57 Identities=26% Similarity=0.310 Sum_probs=46.6
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccccCCCC
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIKDHHP 74 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig~mvf 74 (530)
.||......-..|++-+|.||+|+|||||. +.+.+.|.=.-..|.|.|+ ++|.++.|
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa--~~i~G~p~Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLA--YTIMGHPKYEVTEGEILFDGEDILELSP 75 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHH--HHHhCCCCceEecceEEECCcccccCCH
Confidence 466666666779999999999999999987 9999998766667888888 88864544
No 366
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.62 E-value=3.6e-05 Score=71.63 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=24.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHH
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLL 50 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl 50 (530)
|++..-.-..|+.++|.||||||||||+ +++
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl--~~i 41 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV--NEG 41 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHH--HHH
Confidence 4455555578999999999999999997 555
No 367
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.61 E-value=4.5e-05 Score=69.62 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
+|++++|+||||||||||+ +++.+...
T Consensus 1 ~g~~i~l~G~sGsGKsTl~--~~l~~~~~ 27 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLL--AALRQREQ 27 (186)
T ss_pred CCcEEEEECCCCCCHHHHH--HHHhccCC
Confidence 4789999999999999996 56655433
No 368
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.61 E-value=5.4e-05 Score=75.73 Aligned_cols=76 Identities=20% Similarity=0.143 Sum_probs=57.8
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc-----------CCCCCC--CC
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK-----------DHHPQH--NQ 78 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig-----------~mvfQ~--~n 78 (530)
|.=+.+|+.-...-..+++++|+|.+|+|||||+ +.+.+.-.+++|.+.|+= .+|+ .-+||+ ..
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTll--n~iaG~l~~t~G~I~Idg-~dVtk~~~~~RA~~larVfQdp~~g 92 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLL--NAIAGDLKPTSGQILIDG-VDVTKKSVAKRANLLARVFQDPLAG 92 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHH--HHhhCccccCCceEEECc-eecccCCHHHHhhHHHHHhcchhhC
Confidence 3345667776666678999999999999999998 999999999977777661 2443 124586 56
Q ss_pred CCccchh-ccCCC
Q 043574 79 SFPWSSW-SNCEP 90 (530)
Q Consensus 79 LFPHtsv-eNVal 90 (530)
.+|.+++ ||+++
T Consensus 93 t~~~lTieENl~l 105 (263)
T COG1101 93 TAPELTIEENLAL 105 (263)
T ss_pred CcccccHHHHHHH
Confidence 8899666 99988
No 369
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=97.60 E-value=5.8e-05 Score=85.14 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE------------EeccccCCCCCCCCCCccchh-ccCCC-C
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD------------FAESIKDHHPQHNQSFPWSSW-SNCEP-P 91 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id------------l~~~Ig~mvfQ~~nLFPHtsv-eNVal-p 91 (530)
..++++++.||+|+||||++ +++-|...+.+|+.+|. ..+.+| .-||+..|++.+|- |.+.+ +
T Consensus 589 ~~gecfgLLG~NGAGKtT~f--~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~rEhL~~~a 665 (885)
T KOG0059|consen 589 PPGECFGLLGVNGAGKTTTF--KMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTGREHLEFYA 665 (885)
T ss_pred cCCceEEEecCCCCCchhhH--HHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccHHHHHHHHH
Confidence 47899999999999999998 89999999999999984 112345 55899999999555 77766 2
Q ss_pred C-----hhhHHHHHHHHHHHHHHHhHHhcccchhH--HHHHhhhhccchHHHHHHHhcccc--cccccccCCcchhhHHH
Q 043574 92 T-----LSNCKAQLETCLESMAERGIKLGTISSQQ--IFTTLNKWHGLNTALRRILSKSNK--KVKNAVSDKVSGSILWE 162 (530)
Q Consensus 92 ~-----~~d~r~r~e~aLE~~a~~~v~~g~~~s~~--i~~~l~~~h~l~tal~r~~~~~~~--~~~~~~~~~~~~~~lw~ 162 (530)
. ..|.++.++.+|+++ .++--..++ .++.=||+ .|++|+.-+-.-... ...+.+-|-.+--++|+
T Consensus 666 rlrG~~~~di~~~v~~ll~~~-----~L~~~~~~~~~~ySgG~kR-kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ 739 (885)
T KOG0059|consen 666 RLRGLPRSDIGSAIEKLLRLV-----GLGPYANKQVRTYSGGNKR-RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD 739 (885)
T ss_pred HHcCCChhHHHHHHHHHHHHc-----CChhhhccchhhCCCcchh-hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence 1 446666666666643 222222222 12222232 366666544321110 01124455566677886
No 370
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.58 E-value=6.6e-05 Score=70.88 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=31.1
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCce
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLT 60 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gt 60 (530)
|+++.+.+... .+..+.+++|+||||||||||+ +.+.+...++.|.
T Consensus 18 ~l~~~~~~~~~-~~~~~~iigi~G~~GsGKTTl~--~~L~~~l~~~~g~ 63 (229)
T PRK09270 18 PLLRRLAALQA-EPQRRTIVGIAGPPGAGKSTLA--EFLEALLQQDGEL 63 (229)
T ss_pred HHHHHHHHHHh-cCCCCEEEEEECCCCCCHHHHH--HHHHHHhhhccCC
Confidence 55666444443 3456789999999999999996 5444444445444
No 371
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.57 E-value=6.2e-05 Score=69.75 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=24.2
Q ss_pred cCCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 24 HHRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 24 i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
++..|++++|+||||||||||+ +.+...++
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~-~~l~~~l~ 31 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVA-RKIYEQLG 31 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 5678899999999999999995 55555444
No 372
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.55 E-value=7.5e-05 Score=74.22 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=58.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E---e--cccc---CCCCCCCCCCccchh-ccCCCCChhhH
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F---A--ESIK---DHHPQHNQSFPWSSW-SNCEPPTLSNC 96 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l---~--~~Ig---~mvfQ~~nLFPHtsv-eNValp~~~d~ 96 (530)
+-++|+||+|||||||+ +++.++..+.+|++.++ + + .++. ...|| +++++++++ +|+ +.
T Consensus 112 ~~~~i~g~~g~GKttl~--~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q-~~~~~r~~v~~~~--~k---- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL--RDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQ-HDVGIRTDVLDGC--PK---- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHH--HHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccc-ccccccccccccc--hH----
Confidence 67999999999999998 88888888887776654 1 1 1221 12334 568887554 776 21
Q ss_pred HHHHHHHHHHHHHHhHHhcccchhHHHH
Q 043574 97 KAQLETCLESMAERGIKLGTISSQQIFT 124 (530)
Q Consensus 97 r~r~e~aLE~~a~~~v~~g~~~s~~i~~ 124 (530)
-.-+..++.+|.-+-+-++.+++++.+.
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~ 210 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVE 210 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHH
Confidence 1235667777777777777777766433
No 373
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.53 E-value=7.6e-05 Score=67.80 Aligned_cols=28 Identities=36% Similarity=0.808 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
++++++|+||||+||||| .++|++.++.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l-~~~L~~~~~~ 28 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTL-AKRLIQEFPD 28 (183)
T ss_dssp SSSEEEEESSTTSSHHHH-HHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHhccc
Confidence 468999999999999999 5999998764
No 374
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.50 E-value=7.9e-05 Score=69.56 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..+.+++|+|||||||||| +++|++.++
T Consensus 2 ~~~~~ivl~GpsG~GK~tl-~~~l~~~~~ 29 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTI-IQALLEEHP 29 (186)
T ss_pred CCCeEEEEECCCCCCHHHH-HHHHHhcCC
Confidence 3578999999999999999 699988764
No 375
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.50 E-value=9.6e-05 Score=87.30 Aligned_cols=71 Identities=23% Similarity=0.197 Sum_probs=57.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
.|++..-.-..|+.++|+||-|||||+| |+-++.+++..+ | .|.+...+. .+||++-+|.-|+.|||.|+.
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSL-L~AiLGEm~~~s-G--~v~v~gsia-Yv~Q~pWI~ngTvreNILFG~ 606 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSL-LSAILGEMPKLS-G--SVAVNGSVA-YVPQQPWIQNGTVRENILFGS 606 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHH-HHHHhcCccccc-c--eEEEcCeEE-EeccccHhhCCcHHHhhhcCc
Confidence 5666665567999999999999999999 588888776543 3 455555555 889999998889999999977
No 376
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.49 E-value=0.00011 Score=78.66 Aligned_cols=98 Identities=22% Similarity=0.169 Sum_probs=60.8
Q ss_pred cccccchhhHHHHHhhhhccC------CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc--------
Q 043574 5 AWKIIPRPLLETVLNNHAQHH------RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK-------- 70 (530)
Q Consensus 5 ~w~iiprp~le~vL~~~~qi~------~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig-------- 70 (530)
-|--|+..++.-....+...+ +.|+.++|+|.||||||||- +.+-++..++ |+++++= ++|.
T Consensus 284 v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG--~allrL~~s~-G~I~F~G-~~i~~~~~~~mr 359 (534)
T COG4172 284 VWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLG--LALLRLIPSQ-GEIRFDG-QDIDGLSRKEMR 359 (534)
T ss_pred EEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHH--HHHHhhcCcC-ceEEECC-ccccccChhhhh
Confidence 355566556553333222222 48899999999999999985 5555555544 5554430 3332
Q ss_pred ------CCCCCC--CCCCccchh-ccCCC------CC--hhhHHHHHHHHHHH
Q 043574 71 ------DHHPQH--NQSFPWSSW-SNCEP------PT--LSNCKAQLETCLES 106 (530)
Q Consensus 71 ------~mvfQ~--~nLFPHtsv-eNVal------p~--~~d~r~r~e~aLE~ 106 (530)
-.+||+ .+|-|.+++ +=|+. |. .++..+++.++|+.
T Consensus 360 plR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~E 412 (534)
T COG4172 360 PLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEE 412 (534)
T ss_pred hhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHH
Confidence 145686 578899777 44444 22 55667788888875
No 377
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.49 E-value=6.4e-05 Score=69.36 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKE 56 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~ 56 (530)
.|++++|+||||||||||+ +++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~--~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIG--SKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHH--HHHHHhcCC
Confidence 4789999999999999997 666665443
No 378
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.47 E-value=8.8e-05 Score=66.04 Aligned_cols=26 Identities=42% Similarity=0.689 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
|++++|+||||||||||+ +.+.+.++
T Consensus 1 g~ii~l~G~~GsGKsTl~-~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLV-KALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHccCc
Confidence 578999999999999995 66666543
No 379
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.45 E-value=0.00021 Score=70.77 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE----------Ee-ccccCCCCCCCC--CCccchh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD----------FA-ESIKDHHPQHNQ--SFPWSSW 85 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id----------l~-~~Ig~mvfQ~~n--LFPHtsv 85 (530)
.++.++++|.+|+|||||. +++.+.-.|.+|++.++ .+ +.| +|.||++| +-|.+-+
T Consensus 38 ~~QTlaiIG~NGSGKSTLa--kMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~I-RMiFQDpnts~NPRl~i 106 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLA--KMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI-RMIFQDPNTSLNPRLRI 106 (267)
T ss_pred CCcEEEEEccCCCcHhHHH--HHHhcccCCCCceEEECCccccccchHhhhhhe-eeeecCCccccChhhhh
Confidence 6789999999999999998 99999999998888777 11 222 48899755 4555444
No 380
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00019 Score=56.90 Aligned_cols=36 Identities=36% Similarity=0.522 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++.+.|+||+|+||||++ +.+...+.....+-.+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELGPPGGGVIYID 37 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccCCCCCCEEEEC
Confidence 578999999999999995 777776655432344444
No 381
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.43 E-value=6.1e-05 Score=71.54 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=47.8
Q ss_pred cchhhHHHHH-------hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccccCCCCCCCCCC
Q 043574 9 IPRPLLETVL-------NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIKDHHPQHNQSF 80 (530)
Q Consensus 9 iprp~le~vL-------~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig~mvfQ~~nLF 80 (530)
..-|++|..+ |.... ....+.++|+||||+||||++ +.+....-..+...++--. ..++ +. ..+|
T Consensus 5 ~~hp~~~~~~~~~~~v~n~~~l-~~~~~~~~l~Gpn~sGKstll--r~i~~~~~l~~~g~~vp~~~~~i~-~~---~~i~ 77 (216)
T cd03284 5 GRHPVVEQVLDNEPFVPNDTEL-DPERQILLITGPNMAGKSTYL--RQVALIALLAQIGSFVPASKAEIG-VV---DRIF 77 (216)
T ss_pred ccCCEEeeccCCCceEeeeEEe-cCCceEEEEECCCCCChHHHH--HHHHHHHHHhccCCeeccccceec-ce---eeEe
Confidence 3457777643 22221 123489999999999999997 6665432111111122211 2222 22 2478
Q ss_pred ccch-hccCCCCC---hhhHHHHHHHHHH
Q 043574 81 PWSS-WSNCEPPT---LSNCKAQLETCLE 105 (530)
Q Consensus 81 PHts-veNValp~---~~d~r~r~e~aLE 105 (530)
||.. .+|+..+. ..+ ..++..+++
T Consensus 78 ~~~~~~~~ls~g~s~f~~e-~~~l~~~l~ 105 (216)
T cd03284 78 TRIGASDDLAGGRSTFMVE-MVETANILN 105 (216)
T ss_pred ccCCchhhhccCcchHHHH-HHHHHHHHH
Confidence 8944 59998764 222 334444444
No 382
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=9.7e-05 Score=71.48 Aligned_cols=26 Identities=42% Similarity=0.710 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+|.+++|+||||+||||| ++++++..
T Consensus 3 ~G~l~vlsgPSG~GKsTl-~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTL-VKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHH-HHHHHhhc
Confidence 688999999999999999 58888875
No 383
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.41 E-value=0.00011 Score=68.89 Aligned_cols=27 Identities=37% Similarity=0.684 Sum_probs=22.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+..+++++|+|||||||||| ++.+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl-~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAV-LARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHH-HHHHHhc
Confidence 45788999999999999999 5777654
No 384
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.41 E-value=0.00017 Score=66.16 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=26.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYV 63 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~I 63 (530)
..++.++|+||+|||||||+ +.+.++.+++.+.+.+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll--~aL~~~i~~~~~~i~i 58 (186)
T cd01130 23 EARKNILISGGTGSGKTTLL--NALLAFIPPDERIITI 58 (186)
T ss_pred hCCCEEEEECCCCCCHHHHH--HHHHhhcCCCCCEEEE
Confidence 45789999999999999996 5555555566555554
No 385
>PF13173 AAA_14: AAA domain
Probab=97.41 E-value=0.00015 Score=62.51 Aligned_cols=37 Identities=51% Similarity=0.835 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
+++++|.||+||||||| +.++.+.+. ++....|++++
T Consensus 2 ~~~~~l~G~R~vGKTtl-l~~~~~~~~-~~~~~~yi~~~ 38 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTL-LKQLAKDLL-PPENILYINFD 38 (128)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHhc-ccccceeeccC
Confidence 57899999999999999 577777665 44457888866
No 386
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00015 Score=73.13 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|+.++|+|.||||||||- |++-++..|.+|+++++
T Consensus 37 ~~ge~~glVGESG~GKSTlg--r~i~~L~~pt~G~i~f~ 73 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLG--RLILGLEEPTSGEILFE 73 (268)
T ss_pred cCCCEEEEEecCCCCHHHHH--HHHHcCcCCCCceEEEc
Confidence 48899999999999999987 99999999997777755
No 387
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00014 Score=74.86 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC--CceEEEEEe
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP--HLTGYVDFA 66 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~--~Gtg~Idl~ 66 (530)
..|+.++|+|.|||||||+. +-++..++.+. -.+|.|.|+
T Consensus 29 ~~GE~lgiVGESGsGKS~~~-~aim~llp~~~~~i~~G~i~f~ 70 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLA-KAIMGLLPKPNARIVGGEILFD 70 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHH-HHHHhccCCCCCeEeeeEEEEC
Confidence 58899999999999999995 55666565331 223455544
No 388
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.38 E-value=0.00015 Score=66.07 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=22.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+|++++|+||||||||||+ +.+...+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~-~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLV-KALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 47899999999999999995 5555544
No 389
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.38 E-value=6.9e-05 Score=70.01 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.| .++|+||||+|||||+ +++.++-
T Consensus 22 ~g-~~~i~G~nGsGKStll--~al~~l~ 46 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNII--DAIRWVL 46 (197)
T ss_pred CC-cEEEECCCCCCHHHHH--HHHHHHh
Confidence 45 8999999999999997 7777664
No 390
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00016 Score=72.58 Aligned_cols=36 Identities=31% Similarity=0.311 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
.|+--+|.||+|+|||||| +++.+...+.+|.+.+.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL--~ll~~~~~pssg~~~~~ 91 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLL--SLLTGEHPPSSGDVTLL 91 (257)
T ss_pred CCCcEEEECCCCCCHHHHH--HHHhcccCCCCCceeee
Confidence 6778899999999999998 88887776665555544
No 391
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.37 E-value=0.00019 Score=64.28 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++++|+||||||||||+ +.+...+
T Consensus 1 ~~~~~i~G~sGsGKttl~-~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLL-DYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHc
Confidence 468999999999999995 6665554
No 392
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.37 E-value=0.00015 Score=67.89 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.+++++|+||||+|||||+ +++.
T Consensus 22 ~~~~~~i~GpNGsGKStll--~ai~ 44 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFF--AAIR 44 (243)
T ss_pred CCCcEEEECCCCCCHHHHH--HHHH
Confidence 5789999999999999996 5554
No 393
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.36 E-value=0.00018 Score=78.27 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=26.7
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE 56 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~ 56 (530)
++..-.-..|+.++|.|.|||||||+. +.++..++.+
T Consensus 26 ~~vsf~v~~GE~lgIvGESGsGKSt~a-~~i~gll~~~ 62 (539)
T COG1123 26 RDVSFEVEPGEILGIVGESGSGKSTLA-LALMGLLPEG 62 (539)
T ss_pred ecceEEecCCcEEEEEcCCCCCHHHHH-HHHhccCCCC
Confidence 333333458999999999999999995 5555555544
No 394
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.34 E-value=0.00017 Score=65.91 Aligned_cols=27 Identities=41% Similarity=0.867 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
++++++|+|||||||+|| .++|++.++
T Consensus 1 ~~r~ivl~Gpsg~GK~tl-~~~L~~~~~ 27 (184)
T smart00072 1 DRRPIVLSGPSGVGKGTL-LAELIQEIP 27 (184)
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHhcCC
Confidence 368999999999999999 599988764
No 395
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00014 Score=77.95 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc-----------CCCCCCCCCCccchh-ccCCCCCh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK-----------DHHPQHNQSFPWSSW-SNCEPPTL 93 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig-----------~mvfQ~~nLFPHtsv-eNValp~~ 93 (530)
+.|+++-|+|.+||||||++ +++-|+-.|++|++++|= ..|. .-+|-++.|||.+.- ||-+-
T Consensus 347 krGelvFliG~NGsGKST~~--~LLtGL~~PqsG~I~ldg-~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as--- 420 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLA--MLLTGLYQPQSGEILLDG-KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS--- 420 (546)
T ss_pred ecCcEEEEECCCCCcHHHHH--HHHhcccCCCCCceeECC-ccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCC---
Confidence 48899999999999999999 999999999988888771 1221 234578899998544 65421
Q ss_pred hhHHHHHHHHHHHHHHH---hHHhcccchhHH
Q 043574 94 SNCKAQLETCLESMAER---GIKLGTISSQQI 122 (530)
Q Consensus 94 ~d~r~r~e~aLE~~a~~---~v~~g~~~s~~i 122 (530)
.+.++..|+.|+.+ ++.-|.++.-+.
T Consensus 421 ---~q~i~~~LqrLel~~ktsl~d~~fs~~kL 449 (546)
T COG4615 421 ---PQLIEKWLQRLELAHKTSLNDGRFSNLKL 449 (546)
T ss_pred ---hHHHHHHHHHHHHhhhhcccCCccccccc
Confidence 34566666666544 455666655443
No 396
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.28 E-value=0.00029 Score=63.21 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|.+++++||+||||||+. +.+.+.+.....+..+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a-~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIA-KALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHH-HHHHHHHHHcCCcEEEEe
Confidence 46789999999999999995 777777765554555554
No 397
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00018 Score=59.84 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++|+|||||||||+. +.|.+.+
T Consensus 1 vI~I~G~~gsGKST~a-~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA-KELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEEECCCCCCHHHHH-HHHHHHH
Confidence 4799999999999995 7777755
No 398
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.25 E-value=0.00048 Score=55.60 Aligned_cols=28 Identities=39% Similarity=0.712 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
.++.+.|.||+|+||||+ ++.+.+.+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l-~~~i~~~~~~ 45 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTL-ARAIANELFR 45 (151)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHhhc
Confidence 567899999999999999 5888777653
No 399
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.23 E-value=0.00025 Score=66.49 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++.++++|||||||||| +|.+....
T Consensus 35 ~k~~vl~G~SGvGKSSL-iN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSL-INALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHTSS
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhhc
Confidence 48999999999999999 68888874
No 400
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.19 E-value=0.00044 Score=63.78 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+.+++|+||||||||||+ +.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~-~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVA-STIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHH-HHHHHHh
Confidence 46778999999999999995 6666655
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.17 E-value=0.00034 Score=82.41 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC--CceEEEE--------EeccccCCCCCCCCCCcc-chh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP--HLTGYVD--------FAESIKDHHPQHNQSFPW-SSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~--~Gtg~Id--------l~~~Ig~mvfQ~~nLFPH-tsv 85 (530)
+|+|-.-.-+.|.+++|+|+||+|||||+ +++++=.... .|.+.|+ |.|.+| .+.|+..=-|+ |+.
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLL--dvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G-YvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLL--DVLAGRKTGGYIEGDILISGFPKDQETFARVSG-YVEQQDIHSPELTVR 882 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHH--HHHhcCcccceEEeEEEECCeeCchhhhccccc-eeecccccCcccchH
Confidence 56665666678889999999999999997 6666422111 1222332 233334 44465444488 555
Q ss_pred ccCCC------CC---hhhHHHHHHHHHHHH
Q 043574 86 SNCEP------PT---LSNCKAQLETCLESM 107 (530)
Q Consensus 86 eNVal------p~---~~d~r~r~e~aLE~~ 107 (530)
|.+-+ |. .++-.+.+|+.+|.+
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~ll 913 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELL 913 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHh
Confidence 88877 33 555346777777655
No 402
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.15 E-value=0.00031 Score=62.25 Aligned_cols=24 Identities=50% Similarity=1.027 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+++|+|||||||||| ++.+.+.++
T Consensus 1 ~i~i~GpsGsGKstl-~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTL-LKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHH-HHHHHhcCC
Confidence 579999999999999 477776554
No 403
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.14 E-value=0.00044 Score=60.46 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=27.3
Q ss_pred hhHHHHHhhhh-ccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC
Q 043574 12 PLLETVLNNHA-QHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE 56 (530)
Q Consensus 12 p~le~vL~~~~-qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~ 56 (530)
..++.+.+... .....++.++|+||+|+||||| ++++...+...
T Consensus 7 ~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~l-l~~~~~~~~~~ 51 (185)
T PF13191_consen 7 EEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSL-LRALLDRLAER 51 (185)
T ss_dssp HHHHHHHHTTGGTSS-----EEE-B-TTSSHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 34566666653 3345778999999999999999 58888877655
No 404
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.12 E-value=0.00021 Score=66.94 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLL 50 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl 50 (530)
..+++|+||||+|||||+ +.+
T Consensus 22 ~g~~~i~G~NGsGKTTLl--~ai 42 (204)
T cd03240 22 SPLTLIVGQNGAGKTTII--EAL 42 (204)
T ss_pred CCeEEEECCCCCCHHHHH--HHH
Confidence 349999999999999996 555
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.11 E-value=0.00065 Score=74.93 Aligned_cols=69 Identities=23% Similarity=0.238 Sum_probs=47.5
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecc--ccCCCCCCCCCCccchhccCCCCC
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAES--IKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~--Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
++..-.-+.|+-+.|.||||||||||+ |.++|+-+-. +|.|....+ +- +.||.+-+-.-+..|-|.+|.
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLl--RaiaGLWP~g--~G~I~~P~~~~~l-flpQ~PY~p~GtLre~l~YP~ 480 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLL--RALAGLWPWG--SGRISMPADSALL-FLPQRPYLPQGTLREALCYPN 480 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHH--HHHhccCccC--CCceecCCCCceE-EecCCCCCCCccHHHHHhCCC
Confidence 333333458899999999999999998 9999876544 555554411 22 457876543336668888877
No 406
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.08 E-value=0.00063 Score=62.14 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++|+||||||||||. +.+...+
T Consensus 1 iigi~G~~GsGKSTl~-~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVA-EEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHH-HHHHHHh
Confidence 4799999999999995 5555555
No 407
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.08 E-value=0.00021 Score=66.10 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=26.4
Q ss_pred chhhHHHH----HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 10 PRPLLETV----LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 10 prp~le~v----L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.-|+||.. -.+--.+....+.++|+||+|+|||||+ +.+.
T Consensus 6 ~hp~~~~~~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll--~~i~ 49 (200)
T cd03280 6 RHPLLPLQGEKVVPLDIQLGENKRVLVITGPNAGGKTVTL--KTLG 49 (200)
T ss_pred CCCEEeccCCceEcceEEECCCceEEEEECCCCCChHHHH--HHHH
Confidence 35778753 2222222223368999999999999997 6665
No 408
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.0003 Score=66.63 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred CCCCCeEEEEcCCCCChhhHH
Q 043574 25 HRVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLL 45 (530)
-..|++++|+||||||||||+
T Consensus 18 i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred cCCCcEEEEEcCCCCCHHHHH
Confidence 468999999999999999995
No 409
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.03 E-value=0.00066 Score=68.45 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=20.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+.+++|+||||||||||+ +++.++
T Consensus 60 ~~p~IIGIaG~~GSGKSTla--r~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTA--RILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHH--HHHHHH
Confidence 45678999999999999996 544444
No 410
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.03 E-value=0.00046 Score=63.96 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=43.1
Q ss_pred hHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEecccc--CC--CCCCCCCCccc
Q 043574 13 LLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFAESIK--DH--HPQHNQSFPWS 83 (530)
Q Consensus 13 ~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~~~Ig--~m--vfQ~~nLFPHt 83 (530)
-|+.+|+. --..|+++.|+||||+|||||+++-+.+..... ..+.+||+...... ++ ..|..+..+..
T Consensus 7 ~lD~~l~G---Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~ 83 (235)
T cd01123 7 ALDELLGG---GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEE 83 (235)
T ss_pred hhHhhccC---CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHh
Confidence 34555442 235689999999999999999744444422221 35678887543211 00 01344444555
Q ss_pred hhccCCC
Q 043574 84 SWSNCEP 90 (530)
Q Consensus 84 sveNVal 90 (530)
..+|+.+
T Consensus 84 ~~~~i~~ 90 (235)
T cd01123 84 VLDNIYV 90 (235)
T ss_pred HhcCEEE
Confidence 5566665
No 411
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.02 E-value=0.0012 Score=65.89 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..++.++|+||+|+|||||+ +.++..+ .++.+.+.|+
T Consensus 142 ~~~~~ili~G~tGsGKTTll-~al~~~~-~~~~~iv~ie 178 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFL-KSLVDEI-PKDERIITIE 178 (308)
T ss_pred hCCCEEEEECCCCCCHHHHH-HHHHccC-CccccEEEEc
Confidence 46789999999999999995 5555544 4454544543
No 412
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.00 E-value=0.00069 Score=63.16 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=23.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCCCCce
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKEPHLT 60 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gt 60 (530)
+++|+||+||||||+ ++.++..++....+.
T Consensus 3 lilI~GptGSGKTTl-l~~ll~~~~~~~~~~ 32 (198)
T cd01131 3 LVLVTGPTGSGKSTT-LAAMIDYINKNKTHH 32 (198)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhhhcCCcE
Confidence 689999999999999 477777776554333
No 413
>PRK08233 hypothetical protein; Provisional
Probab=97.00 E-value=0.00086 Score=59.20 Aligned_cols=27 Identities=41% Similarity=0.501 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
+.+++|.||+|+|||||. +++...++.
T Consensus 3 ~~iI~I~G~~GsGKtTla-~~L~~~l~~ 29 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLT-ERLTHKLKN 29 (182)
T ss_pred ceEEEEECCCCCCHHHHH-HHHHhhCCC
Confidence 578999999999999995 777777753
No 414
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.99 E-value=0.00057 Score=58.10 Aligned_cols=23 Identities=52% Similarity=0.811 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++++||+||||||+. +.+...+
T Consensus 1 lii~~G~pgsGKSt~a-~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA-KRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHS
T ss_pred CEEEECCCCCCHHHHH-HHHHHHC
Confidence 5899999999999995 7766553
No 415
>PTZ00035 Rad51 protein; Provisional
Probab=96.97 E-value=0.00048 Score=70.25 Aligned_cols=91 Identities=19% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCc-eEEEEEecc-----ccCCCCCCCCCCccchhccCCCCC---
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHL-TGYVDFAES-----IKDHHPQHNQSFPWSSWSNCEPPT--- 92 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~G-tg~Idl~~~-----Ig~mvfQ~~nLFPHtsveNValp~--- 92 (530)
.|.++.|+||+|+|||||+ +.+......| ..| ..||+.... +. ..+|.+++.|....+||.+..
T Consensus 117 ~G~iteI~G~~GsGKT~l~-~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLC-HTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHH-HHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhCCChHhHhhceEEEccCC
Confidence 5789999999999999997 4443221111 223 448874421 22 124778888887789998754
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhcccch
Q 043574 93 LSNCKAQLETCLESMAERGIKLGTISS 119 (530)
Q Consensus 93 ~~d~r~r~e~aLE~~a~~~v~~g~~~s 119 (530)
.++..+.+..+.+.|.+..+++=-|.|
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDS 221 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDS 221 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEEC
Confidence 233233444444444444444434433
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.96 E-value=0.00035 Score=64.61 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.++.++|+||+|+|||||+ +++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll--~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYL--RSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHH--HHHH
Confidence 4689999999999999997 6666
No 417
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.95 E-value=0.00057 Score=62.99 Aligned_cols=80 Identities=16% Similarity=0.028 Sum_probs=47.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEecccc--CC--CCCCCCCCccchhccCCCCC---h
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFAESIK--DH--HPQHNQSFPWSSWSNCEPPT---L 93 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~~~Ig--~m--vfQ~~nLFPHtsveNValp~---~ 93 (530)
..|+++.|.||+|+|||||+++-+.+..... +.+.+||+...... .+ ..|+..+.++...+|+.+.. .
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCCH
Confidence 4678999999999999999755544443222 25678877542221 00 12555555666667776632 4
Q ss_pred hhHHHHHHHHHH
Q 043574 94 SNCKAQLETCLE 105 (530)
Q Consensus 94 ~d~r~r~e~aLE 105 (530)
++....++++++
T Consensus 97 ~~~~~~l~~~~~ 108 (226)
T cd01393 97 EQQLEIVEELER 108 (226)
T ss_pred HHHHHHHHHHHH
Confidence 444445555444
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.94 E-value=0.00023 Score=67.46 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=31.4
Q ss_pred chhhHH-----HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 10 PRPLLE-----TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 10 prp~le-----~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.-|++| .+.|+.......++.++|.||||+||||++ +++.+.
T Consensus 6 ~hpll~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll--~~i~~~ 52 (204)
T cd03282 6 RHPILDRDKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYL--KQIALL 52 (204)
T ss_pred cCCeEeccCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHH--HHHHHH
Confidence 457887 445555554567799999999999999997 666643
No 419
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.94 E-value=0.00066 Score=55.86 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
++|+|++||||||| |+++..+-..
T Consensus 2 I~V~G~~g~GKTsL-i~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSL-IRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHH-HHHHHHSS--
T ss_pred EEEECcCCCCHHHH-HHHHhcCCCc
Confidence 68999999999999 6888876544
No 420
>PLN03073 ABC transporter F family; Provisional
Probab=96.94 E-value=0.00088 Score=74.52 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=30.6
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC---CCCCceEE
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN---KEPHLTGY 62 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~---~~~~Gtg~ 62 (530)
|++..-.-..|+.++|+||||||||||+ +++.+.. .|++|++.
T Consensus 193 l~~isl~i~~Ge~~gLvG~NGsGKSTLL--r~l~g~~~~g~p~~g~I~ 238 (718)
T PLN03073 193 IVDASVTLAFGRHYGLVGRNGTGKTTFL--RYMAMHAIDGIPKNCQIL 238 (718)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHH--HHHcCCCCCCCCCCCEEE
Confidence 3343333457899999999999999998 8887643 34545543
No 421
>PRK07667 uridine kinase; Provisional
Probab=96.92 E-value=0.0013 Score=60.99 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
....+++|+|++|+||||+. +.+.+.+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla-~~L~~~l~~ 43 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFV-ANLKENMKQ 43 (193)
T ss_pred CCCEEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 34468999999999999995 888777754
No 422
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.90 E-value=0.00085 Score=60.63 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.+++++|+|||||||||+. +.+.+.++
T Consensus 1 ~~~~i~l~G~~gsGKst~a-~~l~~~~~ 27 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIA-RALQSVLA 27 (175)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3689999999999999995 66666543
No 423
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.89 E-value=0.00066 Score=62.44 Aligned_cols=26 Identities=54% Similarity=0.677 Sum_probs=21.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKE 56 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~ 56 (530)
+|+|+||||||||||. +++...+...
T Consensus 1 IIgI~G~sgSGKTTla-~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLA-KRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHH-HHHHHHhCcc
Confidence 5899999999999995 8887777643
No 424
>PRK06696 uridine kinase; Validated
Probab=96.88 E-value=0.0012 Score=62.20 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
...+.+++|+||||||||||. +++.+.++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA-~~L~~~l~~ 48 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA-DELAEEIKK 48 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 345568999999999999995 888887754
No 425
>PRK06762 hypothetical protein; Provisional
Probab=96.87 E-value=0.00088 Score=59.30 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++.+++|+|++||||||+. +.+.+.+
T Consensus 1 m~~li~i~G~~GsGKST~A-~~L~~~l 26 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIA-KQLQERL 26 (166)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4678999999999999996 6666665
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.85 E-value=0.0011 Score=61.18 Aligned_cols=39 Identities=26% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+..+.+++|+|+||||||||. +.+...+.....+.++++
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla-~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVA-GALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHH-HHHHHHHHhCCCCEEEEc
Confidence 356789999999999999996 444444433333455554
No 427
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.85 E-value=0.0007 Score=56.12 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++|+||+|||||||+ +++...
T Consensus 2 i~i~G~~~~GKssl~-~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLV-NVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHH-HHHccC
Confidence 689999999999994 766654
No 428
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.0013 Score=67.82 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
.|+++++.||+|+||||++ +++-|+-.|.+|.+.|.
T Consensus 49 ~G~ivgflGaNGAGKSTtL--KmLTGll~p~~G~v~V~ 84 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTL--KMLTGLLLPTSGKVRVN 84 (325)
T ss_pred CCcEEEEEcCCCCcchhhH--HHHhCccccCCCeEEec
Confidence 7889999999999999999 99999999996666655
No 429
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.84 E-value=0.0012 Score=62.42 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
...+++|+|||||||||| +++++..+....-..+.|.
T Consensus 5 ~~~ii~ivG~sgsGKTTL-i~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTL-LKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHHH-HHHHHHHHhhcCCeEEEEE
Confidence 345899999999999999 6899888754222234444
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.82 E-value=0.00087 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHH
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLL 50 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl 50 (530)
.+..+.|+||||+|||||+ .-+.
T Consensus 22 ~g~~tli~G~nGsGKSTll-DAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL-DAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHH
Confidence 3568999999999999995 4433
No 431
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.81 E-value=0.0012 Score=57.28 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..-++|+||+||||||| ++++...
T Consensus 14 ~~~v~i~G~~g~GKStL-l~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTI-LKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHH-HHHHhcC
Confidence 34599999999999999 5777664
No 432
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.79 E-value=0.0013 Score=61.88 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=29.6
Q ss_pred hhhHHHHHhhhhcc-CCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 11 RPLLETVLNNHAQH-HRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 11 rp~le~vL~~~~qi-~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.+-.+.+++..... +..+..++|+||+|+||||| ++.+.+.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl-~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL-IRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHHhcC
Confidence 34445566654332 33455899999999999999 577877665
No 433
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.79 E-value=0.0012 Score=67.77 Aligned_cols=38 Identities=34% Similarity=0.568 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc-----------CCCCCceEEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL-----------NKEPHLTGYVDF 65 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l-----------~~~~~Gtg~Idl 65 (530)
.++..+++|+|||||||| +|++..+. ..+.|+|-+..+
T Consensus 163 ~~~~svl~GqSGVGKSSL-iN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l 211 (301)
T COG1162 163 AGKITVLLGQSGVGKSTL-INALLPELNQKTGEISEKLGRGRHTTTHVEL 211 (301)
T ss_pred cCCeEEEECCCCCcHHHH-HHhhCchhhhhhhhhcccCCCCCCccceEEE
Confidence 568999999999999999 58887644 345666666553
No 434
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.77 E-value=0.0018 Score=66.62 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=38.7
Q ss_pred hhhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 11 RPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 11 rp~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
+|+...++.........+..++|+||+|+||||| +..+...+......-+.|..+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl-~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 39 RALAQELLDALLPHTGNALRIGITGVPGVGKSTF-IEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred hHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHH-HHHHHHHHHHCCCeEEEEEeC
Confidence 3566677777555445667899999999999999 588887776443334444444
No 435
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0016 Score=64.32 Aligned_cols=37 Identities=27% Similarity=0.156 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+.|++++|.|.||+|||||+ +++.+-..|++|++.-+
T Consensus 30 ~PGeVLgiVGESGSGKtTLL--~~is~rl~p~~G~v~Y~ 66 (258)
T COG4107 30 YPGEVLGIVGESGSGKTTLL--KCISGRLTPDAGTVTYR 66 (258)
T ss_pred cCCcEEEEEecCCCcHHhHH--HHHhcccCCCCCeEEEE
Confidence 37899999999999999998 88888888887776655
No 436
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.74 E-value=0.0015 Score=54.93 Aligned_cols=35 Identities=34% Similarity=0.537 Sum_probs=24.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
.++|+||+|+||||++ ..+............|++.
T Consensus 1 ~~~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLA-LQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHH-HHHHHHHHhcCCEEEEEEC
Confidence 3789999999999995 6666655443333555554
No 437
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.74 E-value=0.00089 Score=59.40 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..+++|.||+||||||++ +++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~-~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQC-EKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHH
Confidence 468999999999999995 555554
No 438
>PLN02796 D-glycerate 3-kinase
Probab=96.73 E-value=0.002 Score=66.98 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
-+++|+||||||||||+ +.+...+.
T Consensus 101 liIGI~G~sGSGKSTLa-~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLV-FALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHH-HHHHHHhc
Confidence 35899999999999995 55555443
No 439
>PLN02772 guanylate kinase
Probab=96.73 E-value=0.0012 Score=69.79 Aligned_cols=28 Identities=43% Similarity=0.869 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
...++++|+|||||||||| ++++++.++
T Consensus 133 ~~~k~iVlsGPSGvGKsTL-~~~L~~~~p 160 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTL-ISMLMKEFP 160 (398)
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHhhhcc
Confidence 3667999999999999999 699988764
No 440
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.73 E-value=0.001 Score=55.62 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 043574 31 LIIHGPRGVGKTTLFLERLL 50 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl 50 (530)
++|+|++|+||||| ++.+.
T Consensus 2 i~l~G~~g~GKTtL-~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSL-INALT 20 (170)
T ss_pred EEEEcCCCCCHHHH-HHHHh
Confidence 68999999999999 57777
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.72 E-value=0.0021 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++|+||+|+||||+. +.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~-~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVA-KKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHH-HHHHHHh
Confidence 4789999999999995 7777766
No 442
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.72 E-value=0.00097 Score=55.72 Aligned_cols=27 Identities=52% Similarity=0.854 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.++.++|+||+|+||||+ ++++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~-~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL-IKRLARQLN 29 (131)
T ss_dssp ----EEEEE-TTSSHHHH-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHH-HHHHHHHhH
Confidence 467899999999999999 588888764
No 443
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.71 E-value=0.0014 Score=62.60 Aligned_cols=24 Identities=33% Similarity=0.270 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+++|+||||||||||+ +.+...+.
T Consensus 1 IigI~G~sGSGKTTla-~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTA-RVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHH-HHHHHHHh
Confidence 4789999999999995 66666654
No 444
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.69 E-value=0.0011 Score=54.54 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
|+|+|++||||||++ +.|.+.+
T Consensus 1 I~i~G~~GsGKtTia-~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA-KELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEECCCCCCHHHHH-HHHHHHH
Confidence 689999999999994 7777765
No 445
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.65 E-value=0.0018 Score=64.10 Aligned_cols=45 Identities=29% Similarity=0.565 Sum_probs=33.4
Q ss_pred hhHHHHHhhhhccC--CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 12 PLLETVLNNHAQHH--RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 12 p~le~vL~~~~qi~--~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
|=.||+...|-... ..++++.|+||+|+|||++ ++.++..++...
T Consensus 15 pT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~l-i~~~l~~l~~~~ 61 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSL-IQNFLSSLDSDK 61 (272)
T ss_dssp --HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHH-HHHHHHCSTTCC
T ss_pred CcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHH-HHhhhccCCccc
Confidence 55677777754432 4789999999999999999 688888765543
No 446
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.65 E-value=0.0013 Score=61.53 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
++.++|.||+|+|||||+ +++.
T Consensus 28 ~~~~~i~G~NGsGKSTll--~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTIL--DAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHH--HHhe
Confidence 679999999999999997 6666
No 447
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.64 E-value=0.00076 Score=64.07 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=27.1
Q ss_pred cchhhHHH-----HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 9 IPRPLLET-----VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 9 iprp~le~-----vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
..-|++|. |-|.+..-+..++.++|.||+|+|||||+ +.+.
T Consensus 5 ~rHPll~~~~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlL--k~i~ 50 (213)
T cd03281 5 GRHPLLELFVDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYL--KQVA 50 (213)
T ss_pred ccCCEEeccCCceEcceEEecCCCceEEEEECCCCCChHHHH--HHHH
Confidence 35688874 22333322222488999999999999996 5544
No 448
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.62 E-value=0.00091 Score=59.70 Aligned_cols=28 Identities=39% Similarity=0.816 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
....++|.||+|+||||| ++++.+....
T Consensus 19 ~~~~~~l~G~rg~GKTsL-l~~~~~~~~~ 46 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSL-LKEFINELKE 46 (234)
T ss_dssp -SSEEEEEESTTSSHHHH-HHHHHHHCT-
T ss_pred cCcEEEEEcCCcCCHHHH-HHHHHHHhhh
Confidence 357899999999999999 6889887643
No 449
>PRK06547 hypothetical protein; Provisional
Probab=96.60 E-value=0.0027 Score=58.94 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=25.9
Q ss_pred hHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 13 LLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 13 ~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++++++...+ .....+++|.|||||||||+. +.+.+.
T Consensus 2 ~~~~~~~~~~--~~~~~~i~i~G~~GsGKTt~a-~~l~~~ 38 (172)
T PRK06547 2 LVALIAARLC--GGGMITVLIDGRSGSGKTTLA-GALAAR 38 (172)
T ss_pred hHHHHHHHhh--cCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence 3455555543 344567899999999999996 666554
No 450
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.60 E-value=0.0034 Score=57.63 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=28.5
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
.+.++.+.|+||+|+|||||+ +.+............|++.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la-~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLL-QAACAAAEERGKSAIYLPL 74 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHH-HHHHHHHHhcCCcEEEEeH
Confidence 466789999999999999995 6666554433334556653
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.58 E-value=0.0023 Score=52.86 Aligned_cols=22 Identities=50% Similarity=0.850 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+.|+||+|+||||++ +.+.+.+
T Consensus 1 ill~G~~G~GKT~l~-~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA-RALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHH-HHHHHHT
T ss_pred CEEECcCCCCeeHHH-HHHHhhc
Confidence 579999999999995 6666654
No 452
>PTZ00301 uridine kinase; Provisional
Probab=96.55 E-value=0.0015 Score=62.72 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+++|.||||||||||. +++.+.+
T Consensus 4 ~iIgIaG~SgSGKTTla-~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLS-TNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHH-HHHHHHH
Confidence 47999999999999995 7666555
No 453
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.55 E-value=0.0013 Score=57.98 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.5
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++|+||+||||||+. +.+...
T Consensus 1 i~l~G~~GsGKSTla-~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA-SALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHH-HHHHHh
Confidence 479999999999996 444444
No 454
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.54 E-value=0.002 Score=71.70 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=35.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-Ee---ccccCCCCCCCCCCcc-chhccC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-FA---ESIKDHHPQHNQSFPW-SSWSNC 88 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l~---~~Ig~mvfQ~~nLFPH-tsveNV 88 (530)
..+++|.||||||||||+ +.+...++ ..+.+.+| +. +.+ +..||++.+|++ +..+|+
T Consensus 65 riIIGIaGpSGSGKTTLA-k~LaglLp--~vgvIsmDdy~~~~~~i-~~nfD~P~a~D~d~L~enL 126 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFT-EKVLNFMP--SIAVISMDNYNDSSRII-DGNFDDPRLTDYDTLLDNI 126 (656)
T ss_pred eEEEEEECCCCCcHHHHH-HHHHhhCC--CcEEEEEcceecchhhh-CccCCChhhcchhHHHHHH
Confidence 357999999999999995 66666553 32344333 11 112 245677777777 333444
No 455
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.54 E-value=0.0022 Score=57.87 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.|.+++|.||+||||||+ ++.+.+.+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~-~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQ-IELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 367899999999999999 477777664
No 456
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.52 E-value=0.0062 Score=56.48 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+-+.|+||+|||||||+ +.| .+-+...+.|=.|.
T Consensus 2 krimliG~~g~GKTTL~-q~L-~~~~~~~~KTq~i~ 35 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLA-QAL-NGEEIRYKKTQAIE 35 (143)
T ss_pred ceEEEECCCCCCHHHHH-HHH-cCCCCCcCccceeE
Confidence 35789999999999996 544 44443333343344
No 457
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.51 E-value=0.0035 Score=57.71 Aligned_cols=24 Identities=46% Similarity=0.612 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
-++|+||+||||||| +++++.+..
T Consensus 11 kv~liG~~g~GKTtL-i~~~~~~~~ 34 (215)
T PTZ00132 11 KLILVGDGGVGKTTF-VKRHLTGEF 34 (215)
T ss_pred eEEEECCCCCCHHHH-HHHHHhCCC
Confidence 489999999999999 577766543
No 458
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.51 E-value=0.004 Score=58.06 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=28.7
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.+.+++++|+||+|+|||||+ +.+.+..........+++..
T Consensus 39 ~~~~~~~~l~G~~G~GKT~La-~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 39 PVADRFFYLWGEAGSGRSHLL-QALVADASYGGRNARYLDAA 79 (227)
T ss_pred cCCCCeEEEECCCCCCHHHHH-HHHHHHHHhCCCcEEEEehH
Confidence 356689999999999999995 55555443334446666644
No 459
>PF05729 NACHT: NACHT domain
Probab=96.51 E-value=0.0019 Score=55.02 Aligned_cols=28 Identities=43% Similarity=0.650 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
|+++|+|+.|+||||+ ++++...+....
T Consensus 1 r~l~I~G~~G~GKStl-l~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTL-LRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHH-HHHHHHHHHhcC
Confidence 5799999999999999 588887775543
No 460
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.48 E-value=0.0017 Score=64.28 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERL 49 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rL 49 (530)
..+++++|+|+||||||||+ +.+
T Consensus 19 p~g~~~~vtGvSGsGKStL~-~~~ 41 (261)
T cd03271 19 PLGVLTCVTGVSGSGKSSLI-NDT 41 (261)
T ss_pred cCCcEEEEECCCCCchHHHH-HHH
Confidence 57899999999999999995 544
No 461
>PRK08118 topology modulation protein; Reviewed
Probab=96.47 E-value=0.0022 Score=58.74 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+||+|||||||. +++-+.+
T Consensus 3 rI~I~G~~GsGKSTla-k~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLA-RQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4899999999999996 6666554
No 462
>PRK06893 DNA replication initiation factor; Validated
Probab=96.47 E-value=0.0038 Score=59.51 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
+....+.|+||+|+|||+|+ +-+.+.+........|+...
T Consensus 37 ~~~~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLL-KAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred cCCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEeeHH
Confidence 44456899999999999995 66555543333456777754
No 463
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0027 Score=56.99 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.|++++|+|++|+||||+. +.+...+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a-~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIA-RALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 5789999999999999995 55555553
No 464
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.46 E-value=0.0026 Score=63.04 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
+++|+||||||||||+ +.+.++..+.
T Consensus 1 iigI~G~sGsGKSTl~--~~L~~ll~~~ 26 (273)
T cd02026 1 IIGVAGDSGCGKSTFL--RRLTSLFGSD 26 (273)
T ss_pred CEEEECCCCCCHHHHH--HHHHHhhCCC
Confidence 4799999999999996 5444444333
No 465
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.44 E-value=0.0022 Score=53.96 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++|+||+||||||| ++++...
T Consensus 2 i~i~G~~~~GKTsl-i~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAI-TIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHH-HHHHHhC
Confidence 68999999999999 5888754
No 466
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.44 E-value=0.002 Score=61.07 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=34.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccccCCCCCCCCCCccchh-ccCCC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIKDHHPQHNQSFPWSSW-SNCEP 90 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig~mvfQ~~nLFPHtsv-eNVal 90 (530)
++++|.||||+||||++ +++......+-. ..+ +.++ ..+|+..++|+++. +++.+
T Consensus 26 ~i~~ivGpNGaGKSTll--~~i~~~~G~~~~----~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 82 (212)
T cd03274 26 SFSAIVGPNGSGKSNVI--DSMLFVFGFRAS----KMRQKKLS-DLIHNSAGHPNLDSCSVEVH 82 (212)
T ss_pred CeEEEECCCCCCHHHHH--HHHHHHhccCHH----HhhhhhHH-HHhcCCCCCCCCceEEEEEE
Confidence 78999999999999996 555533221100 012 3455 55688888888544 54433
No 467
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.42 E-value=0.0023 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++++|++||||||| ++++..+-
T Consensus 4 i~iiG~~~vGKTsl-~~~~~~~~ 25 (162)
T cd04138 4 LVVVGAGGVGKSAL-TIQLIQNH 25 (162)
T ss_pred EEEECCCCCCHHHH-HHHHHhCC
Confidence 78999999999999 58888653
No 468
>PRK07261 topology modulation protein; Provisional
Probab=96.42 E-value=0.0025 Score=58.36 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+||||+|||||. +.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla-~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLA-RKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHh
Confidence 4789999999999995 6655543
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.41 E-value=0.0036 Score=63.44 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHL 59 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~G 59 (530)
.+..++|+||+||||||+ |+.++..++.+.++
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~~~~ 152 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKNAAG 152 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcCCCC
Confidence 467899999999999999 57777777655433
No 470
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.39 E-value=0.0031 Score=54.39 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.-++++|++||||||| ++++..+.
T Consensus 8 ~~v~v~G~~~~GKSsl-i~~l~~~~ 31 (169)
T cd04114 8 FKIVLIGNAGVGKTCL-VRRFTQGL 31 (169)
T ss_pred eEEEEECCCCCCHHHH-HHHHHhCC
Confidence 3589999999999999 58887554
No 471
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.39 E-value=0.0012 Score=59.99 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=14.5
Q ss_pred EcCCCCChhhHHHHHHHhhc
Q 043574 34 HGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 34 ~GPSGvGKSTLLL~rLl~~l 53 (530)
+|||||||||++ +.+.+.+
T Consensus 1 ~G~sGsGKSTla-~~la~~l 19 (163)
T PRK11545 1 MGVSGSGKSAVA-SEVAHQL 19 (163)
T ss_pred CCCCCCcHHHHH-HHHHHHh
Confidence 599999999996 5555543
No 472
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.39 E-value=0.0035 Score=55.73 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=23.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+|+......+. .-++|+||+||||||| ++++...
T Consensus 9 ~~~~~~~~~~~-~ki~ilG~~~~GKStL-i~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKE-AKILFLGLDNAGKTTL-LHMLKDD 42 (190)
T ss_pred HHHHhhcccCC-CEEEEECCCCCCHHHH-HHHHhcC
Confidence 34443333333 4469999999999999 5777654
No 473
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.39 E-value=0.0028 Score=57.48 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..|.+++|+|+||+||||+. +.+...+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla-~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIA-NALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46789999999999999996 55555443
No 474
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.37 E-value=0.0029 Score=60.59 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
...+++|.||+|+|||||+ ..+...-.++
T Consensus 21 ~~~~~~i~G~NGsGKStll--~ai~~~l~~~ 49 (247)
T cd03275 21 FDRFTCIIGPNGSGKSNLM--DAISFVLGEK 49 (247)
T ss_pred CCCeEEEECCCCCCHHHHH--HHHHHHhCCC
Confidence 3458999999999999997 6666554443
No 475
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.37 E-value=0.0023 Score=56.27 Aligned_cols=19 Identities=42% Similarity=0.770 Sum_probs=16.6
Q ss_pred CCCeEEEEcCCCCChhhHH
Q 043574 27 VPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLL 45 (530)
.+.+.+|+||+|+||||++
T Consensus 18 ~~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp -SEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4578999999999999996
No 476
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.37 E-value=0.0047 Score=61.31 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 15 ETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 15 e~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
..+|.+.......++.++|+||+|+||||| +..+...+.......+.|+++
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl-~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTL-LEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHH-HHHHHHHHHHCCCeEEEEecC
Confidence 345666655566789999999999999999 477776655433334444443
No 477
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.36 E-value=0.0026 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++++|++||||||| ++++..+-
T Consensus 3 i~~vG~~~vGKTsl-i~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCI-IKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHH-HHHHHhCC
Confidence 78999999999999 58887653
No 478
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.34 E-value=0.0036 Score=57.96 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=42.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCChhhHHHHHHHHHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPTLSNCKAQLETCLE 105 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~~~d~r~r~e~aLE 105 (530)
..+..+++.||+||||||+ ++.+.+.+. ..+.+.|+-+ .+...+|+- .++....-. .....++..+..+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~-~~~~~~~~~--~~~~v~i~~D-~~r~~~p~~----~~~~~~~~~-~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTL-ARQLLEEFG--GGGIVVIDAD-EFRQFHPDY----DELLKADPD-EASELTQKEASRLAE 83 (199)
T ss_dssp SS-EEEEEES-TTSTTHHH-HHHHHHHT---TT-SEEE-GG-GGGGGSTTH----HHHHHHHCC-CTHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHH-HHHhhhhcc--CCCeEEEehH-HHHHhccch----hhhhhhhhh-hhHHHHHHHHHHHHH
Confidence 4667889999999999999 588888775 3346666644 332233321 011111110 112223445566666
Q ss_pred HHHHHhHHhc
Q 043574 106 SMAERGIKLG 115 (530)
Q Consensus 106 ~~a~~~v~~g 115 (530)
.+.++|+..|
T Consensus 84 ~~~~~a~~~~ 93 (199)
T PF06414_consen 84 KLIEYAIENR 93 (199)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHcC
Confidence 6666666654
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=96.33 E-value=0.0059 Score=62.60 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe--------ccccCCCCCCCCCCccchhccCCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA--------ESIKDHHPQHNQSFPWSSWSNCEPP 91 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~--------~~Ig~mvfQ~~nLFPHtsveNValp 91 (530)
.++.++|+|+||+|||||+ +.+.+...+..|.+.++-. +++. ..+|+..+|....+.|+.+.
T Consensus 194 ~g~~~~lvG~sgvGKStLi--n~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~-~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLV--NALLGEEVQKTGAVREDDSKGRHTTTHRELH-PLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred cCCEEEEECCCCccHHHHH--HHHHHhcccceeeEEECCCCCcchhhhccEE-EecCCCeecCCCchhhhccc
Confidence 4689999999999999996 5444555566444443311 1111 22465555544444555553
No 480
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.33 E-value=0.0027 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++|+|++||||||| ++++..+-
T Consensus 3 i~viG~~~~GKSsl-~~~l~~~~ 24 (172)
T cd01862 3 VIILGDSGVGKTSL-MNQYVNKK 24 (172)
T ss_pred EEEECCCCCCHHHH-HHHHhcCC
Confidence 78999999999999 58887763
No 481
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=96.31 E-value=0.0065 Score=67.46 Aligned_cols=65 Identities=28% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccC--CCCCCCCCCcc-chhccCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKD--HHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~--mvfQ~~nLFPH-tsveNValp~ 92 (530)
-..|+-+.||||||||||+|+ |.+.++-...+|++.-..+...++ .+||.+- ||- |..|-|.+|.
T Consensus 458 V~~g~~LLItG~sG~GKtSLl--RvlggLWp~~~G~l~k~~~~~~~~lfflPQrPY-mt~GTLRdQvIYP~ 525 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLL--RVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY-MTLGTLRDQVIYPL 525 (659)
T ss_pred ecCCCeEEEECCCCCchhHHH--HHHhcccccCCCeEEecccCCCCceEEecCCCC-ccccchhheeeccC
Confidence 357888999999999999998 999888765645544443321111 3467532 333 4446666663
No 482
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.30 E-value=0.0039 Score=67.54 Aligned_cols=39 Identities=33% Similarity=0.460 Sum_probs=26.3
Q ss_pred HHHHHhhhhc---cCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 14 LETVLNNHAQ---HHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 14 le~vL~~~~q---i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++.|.+|... .....++++|+||+||||||++ +-+.+.+
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv-~~La~el 69 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV-KVLAKEL 69 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHH-HHHHHHh
Confidence 4555555433 2234679999999999999996 4444443
No 483
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.30 E-value=0.0018 Score=65.53 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh-hcCCCC----CceEEEEEecccc--C--CCCCCCCCCccchhccCCCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK-DLNKEP----HLTGYVDFAESIK--D--HHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~-~l~~~~----~Gtg~Idl~~~Ig--~--mvfQ~~nLFPHtsveNValp~ 92 (530)
.+.++.|+||+|+|||||+++-+.+ .++... ...+||+....+. + ...|.+++.|....+||.+..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~ 169 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYAR 169 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEe
Confidence 4789999999999999997433332 222111 1347877542211 0 123677888887779987754
No 484
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.30 E-value=0.0033 Score=58.09 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
+++|+|+||||||||. +.+.+.+..
T Consensus 1 ii~i~G~sgsGKttla-~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFA-KKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 4799999999999995 777777653
No 485
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.27 E-value=0.0031 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++++||+||||||| +++++.+-
T Consensus 4 i~v~G~~~~GKSsl-i~~l~~~~ 25 (163)
T cd01860 4 LVLLGDSSVGKSSL-VLRFVKNE 25 (163)
T ss_pred EEEECCCCCCHHHH-HHHHHcCC
Confidence 78999999999999 58888764
No 486
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.26 E-value=0.0035 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
|..++++||+|+||||| ++++...
T Consensus 1 ~~~i~l~G~~~~GKstl-i~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSL-LNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHCC
Confidence 34689999999999999 5777754
No 487
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.26 E-value=0.0033 Score=51.13 Aligned_cols=23 Identities=48% Similarity=0.732 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++++|++|+||||| ++++...-
T Consensus 3 ki~~~G~~~~GKstl-~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTL-LNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHH-HHHHhCCC
Confidence 479999999999999 57777664
No 488
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.25 E-value=0.0046 Score=59.26 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.++.++|+||+|||||||+ +-+.+..........|+.++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl-~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLL-HAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHhCCCeEEEEEHH
Confidence 4568999999999999995 55555444333345666654
No 489
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.24 E-value=0.0033 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 2 ki~v~G~~~~GKTsl-i~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSAL-TIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 378999999999999 5888764
No 490
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.23 E-value=0.0052 Score=54.40 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
..++++|+||+||||| ++.+..
T Consensus 103 ~~v~~~G~~nvGKStl-iN~l~~ 124 (157)
T cd01858 103 ISVGFIGYPNVGKSSI-INTLRS 124 (157)
T ss_pred eEEEEEeCCCCChHHH-HHHHhc
Confidence 3567999999999999 577765
No 491
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.23 E-value=0.0033 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++++|++||||||| ++++..+-
T Consensus 3 v~v~G~~~~GKTtl-i~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSL-LSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHH-HHHHhcCC
Confidence 78999999999999 68888654
No 492
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.23 E-value=0.014 Score=57.49 Aligned_cols=42 Identities=12% Similarity=0.265 Sum_probs=26.4
Q ss_pred hhhHHHHHhhh----hccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 11 RPLLETVLNNH----AQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 11 rp~le~vL~~~----~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+|+++.+=.=. ....-....++++||+|+||||++ +.+.+.+
T Consensus 5 ~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l--~~i~g~~ 50 (240)
T smart00053 5 IPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVL--ENFVGRD 50 (240)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHH--HHHhCCC
Confidence 46666653322 111234446999999999999996 5555543
No 493
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.21 E-value=0.015 Score=64.36 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchh-ccCCCCChh
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSW-SNCEPPTLS 94 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsv-eNValp~~~ 94 (530)
+++++..---....-++++||+|||||||| +++-+...|. .|.|. +-+++-|| -. ++.+....-
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLl--Kl~~gdl~p~--~G~vs---------~~~H~~~~--~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLL--KLITGDLQPT--IGMVS---------RHSHNKLP--RYNQHLAEQLDL 468 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhH--HHHhhccccc--ccccc---------ccccccch--hhhhhhHhhcCc
Q ss_pred hHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccch-HHHHHHHhcccccccccccCCcchhhHHHHHHHHhhcccc
Q 043574 95 NCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLN-TALRRILSKSNKKVKNAVSDKVSGSILWERAVYALSARVN 173 (530)
Q Consensus 95 d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~-tal~r~~~~~~~~~~~~~~~~~~~~~lw~rav~a~s~~~~ 173 (530)
+ ...||-|-.+.-. .++++....+-.+.||+ .+..+-++. +|++----++..|..+-.++
T Consensus 469 ~-----~s~le~~~~~~~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~--------LS~Gqr~rVlFa~l~~kqP~--- 529 (614)
T KOG0927|consen 469 D-----KSSLEFMMPKFPD---EKELEEMRSILGRFGLTGDAQVVPMSQ--------LSDGQRRRVLFARLAVKQPH--- 529 (614)
T ss_pred c-----hhHHHHHHHhccc---cchHHHHHHHHHHhCCCccccccchhh--------cccccchhHHHHHHHhcCCc---
Q ss_pred cccchhhhhcccCCCccChhHHHHHHHHH
Q 043574 174 AKEIDGVLELRENGKRLSLEEETYLREGL 202 (530)
Q Consensus 174 ~~e~~~~~~~~ek~~~~s~ee~~y~~e~~ 202 (530)
+|=+.|-+|-|.+|-++...||+
T Consensus 530 ------lLlLDEPtnhLDi~tid~laeai 552 (614)
T KOG0927|consen 530 ------LLLLDEPTNHLDIETIDALAEAI 552 (614)
T ss_pred ------EEEecCCCcCCCchhHHHHHHHH
No 494
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.21 E-value=0.0064 Score=55.44 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=26.6
Q ss_pred hhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 20 NHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 20 ~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..++.-..+.+++|+|+.|+||||| .+.+.+.+.
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl-~~~l~~~lg 47 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTL-VQGLLQGLG 47 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHH-HHHHHHHcC
Confidence 3444445778999999999999999 477777764
No 495
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.21 E-value=0.023 Score=65.26 Aligned_cols=182 Identities=22% Similarity=0.373 Sum_probs=94.2
Q ss_pred cchhhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccC
Q 043574 9 IPRPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNC 88 (530)
Q Consensus 9 iprp~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNV 88 (530)
||||=|-..|++ ....++++|+-|.|.|||||+ -.... ...+...-+++.++.+=. -|+ ..+-++ .+-|
T Consensus 22 v~R~rL~~~L~~----~~~~RL~li~APAGfGKttl~-aq~~~-~~~~~~~v~Wlslde~dn--dp~--rF~~yL-i~al 90 (894)
T COG2909 22 VVRPRLLDRLRR----ANDYRLILISAPAGFGKTTLL-AQWRE-LAADGAAVAWLSLDESDN--DPA--RFLSYL-IAAL 90 (894)
T ss_pred cccHHHHHHHhc----CCCceEEEEeCCCCCcHHHHH-HHHHH-hcCcccceeEeecCCccC--CHH--HHHHHH-HHHH
Confidence 556655555544 235589999999999999996 44444 344455567776652111 111 001111 1211
Q ss_pred C--CCChhhHHHHHHHHHHHHHHHhHHh--cccchhHHHHHhhhhcc----------------chHHHHHHHhccccccc
Q 043574 89 E--PPTLSNCKAQLETCLESMAERGIKL--GTISSQQIFTTLNKWHG----------------LNTALRRILSKSNKKVK 148 (530)
Q Consensus 89 a--lp~~~d~r~r~e~aLE~~a~~~v~~--g~~~s~~i~~~l~~~h~----------------l~tal~r~~~~~~~~~~ 148 (530)
. .|...+ . +++|+++=... =+| -.++|+-|..||| ++++|++++.-...+..
T Consensus 91 ~~~~p~~~~-~------a~~l~q~~~~~~l~~l-~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 91 QQATPTLGD-E------AQTLLQKHQYVSLESL-LSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHhCccccH-H------HHHHHHhcccccHHHH-HHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 1 122111 0 01222221110 000 1245555666655 58999999984332221
Q ss_pred ccccCCcchhhHHHHHHHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHHHHH----HHHHHHHhHHHH
Q 043574 149 NAVSDKVSGSILWERAVYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVGLKL----AKEVLNMQHEWR 219 (530)
Q Consensus 149 ~~~~~~~~~~~lw~rav~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~l~l----ak~v~~~~~GW~ 219 (530)
--+.+.-..+ +.+ ++.+- -|.+++.|+.-=.||-||.+.|=+.-.++.+ +|.+.+..+||.
T Consensus 163 lvv~SR~rP~-------l~l-a~lRl--r~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 163 LVVTSRSRPQ-------LGL-ARLRL--RDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWA 227 (894)
T ss_pred EEEEeccCCC-------Ccc-cceee--hhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHH
Confidence 1111111110 000 01111 1366777766667899999888777665544 789999999995
No 496
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.19 E-value=0.0067 Score=52.13 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEEcCCCCChhhHHHHHHHh
Q 043574 31 LIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~ 51 (530)
++++|++||||||| ++++..
T Consensus 3 i~vvG~~~~GKtsl-~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAF-VQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHH-HHHHhc
Confidence 78999999999999 588875
No 497
>PRK00098 GTPase RsgA; Reviewed
Probab=96.19 E-value=0.0045 Score=61.59 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.++++||||+|||||+ +.+...
T Consensus 163 ~gk~~~~~G~sgvGKStli-n~l~~~ 187 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLL-NALAPD 187 (298)
T ss_pred cCceEEEECCCCCCHHHHH-HHHhCC
Confidence 4678999999999999995 666654
No 498
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.19 E-value=0.0037 Score=53.84 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++|+|++||||||| ++++...+
T Consensus 2 i~~vG~~~~GKstL-i~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTF-LEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHH-HHHHhhhc
Confidence 68999999999999 58776543
No 499
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.18 E-value=0.0035 Score=55.35 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+++|.||.||||||++ +++.+.++
T Consensus 2 ~I~ieG~~GsGKtT~~-~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLI-ELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHH
Confidence 6899999999999994 77777764
No 500
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.17 E-value=0.0041 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..++|+||+||||||+. ..+-+.+
T Consensus 3 ~~~~i~l~G~~GsGKstla-~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIG-RLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHH-HHHHHHh
Confidence 4568999999999999996 4444543
Done!