Query 043574
Match_columns 530
No_of_seqs 276 out of 525
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 10:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 99.4 2.1E-13 7.2E-18 136.9 5.9 86 19-107 21-126 (359)
2 3rlf_A Maltose/maltodextrin im 99.4 1.7E-13 5.7E-18 138.7 3.6 86 19-107 20-121 (381)
3 1v43_A Sugar-binding transport 99.3 5.6E-13 1.9E-17 134.0 3.7 86 18-106 27-128 (372)
4 2yyz_A Sugar ABC transporter, 99.3 6.3E-13 2.2E-17 133.0 3.2 86 18-106 19-120 (359)
5 2it1_A 362AA long hypothetical 99.3 6.9E-13 2.4E-17 132.9 2.9 86 18-106 19-120 (362)
6 1g29_1 MALK, maltose transport 99.3 1E-12 3.6E-17 131.6 3.6 86 19-107 20-127 (372)
7 1z47_A CYSA, putative ABC-tran 99.3 7.1E-13 2.4E-17 132.6 2.1 86 18-106 31-132 (355)
8 3tui_C Methionine import ATP-b 99.3 1.2E-12 4E-17 132.1 3.1 80 25-107 51-151 (366)
9 1oxx_K GLCV, glucose, ABC tran 99.2 1.3E-12 4.4E-17 130.0 2.3 87 18-107 21-128 (353)
10 3d31_A Sulfate/molybdate ABC t 99.2 1.9E-12 6.5E-17 128.9 0.7 71 18-91 16-96 (348)
11 3tif_A Uncharacterized ABC tra 99.2 8.1E-12 2.8E-16 116.4 3.6 70 18-90 21-106 (235)
12 1mv5_A LMRA, multidrug resista 99.1 1.4E-11 5E-16 114.8 3.7 72 17-91 17-99 (243)
13 2ff7_A Alpha-hemolysin translo 99.1 3.1E-11 1.1E-15 113.5 4.5 72 18-92 25-107 (247)
14 2onk_A Molybdate/tungstate ABC 99.1 3.8E-11 1.3E-15 112.8 5.0 63 26-92 23-95 (240)
15 2pcj_A ABC transporter, lipopr 99.1 1.8E-11 6.3E-16 113.1 2.3 71 18-91 20-106 (224)
16 1ji0_A ABC transporter; ATP bi 99.1 2.9E-11 1E-15 112.8 3.4 71 18-91 22-105 (240)
17 3gd7_A Fusion complex of cysti 99.1 1.4E-11 4.9E-16 124.4 1.0 83 18-105 37-130 (390)
18 3nh6_A ATP-binding cassette SU 99.1 1.3E-11 4.4E-16 120.9 0.5 72 18-92 70-152 (306)
19 1b0u_A Histidine permease; ABC 99.1 2.5E-11 8.5E-16 115.0 2.3 70 18-90 22-116 (262)
20 1g6h_A High-affinity branched- 99.1 4E-11 1.4E-15 112.9 3.6 71 18-91 23-106 (257)
21 4g1u_C Hemin import ATP-bindin 99.1 4.5E-11 1.5E-15 113.9 3.4 80 25-107 34-129 (266)
22 2nq2_C Hypothetical ABC transp 99.1 9.1E-11 3.1E-15 110.9 5.4 69 18-91 21-90 (253)
23 1vpl_A ABC transporter, ATP-bi 99.1 4.9E-11 1.7E-15 113.3 3.3 70 18-90 31-111 (256)
24 2olj_A Amino acid ABC transpor 99.0 4.2E-11 1.4E-15 114.3 2.4 63 25-90 47-123 (263)
25 3gfo_A Cobalt import ATP-bindi 99.0 5.2E-11 1.8E-15 114.6 2.3 87 18-107 24-131 (275)
26 2pze_A Cystic fibrosis transme 99.0 3E-10 1E-14 105.3 6.2 70 18-92 24-93 (229)
27 3b5x_A Lipid A export ATP-bind 99.0 1.6E-10 5.3E-15 119.9 4.4 156 17-204 358-525 (582)
28 1sgw_A Putative ABC transporte 99.0 9.8E-11 3.3E-15 108.8 2.2 71 18-91 25-102 (214)
29 2ghi_A Transport protein; mult 99.0 9.3E-11 3.2E-15 111.0 1.5 72 17-92 35-117 (260)
30 4a82_A Cystic fibrosis transme 98.9 8.6E-11 2.9E-15 121.9 -0.1 72 18-92 357-439 (578)
31 2qi9_C Vitamin B12 import ATP- 98.9 2.7E-10 9.2E-15 107.8 3.3 85 17-106 15-113 (249)
32 2yl4_A ATP-binding cassette SU 98.9 1.3E-10 4.6E-15 120.7 1.0 85 18-105 360-458 (595)
33 2d2e_A SUFC protein; ABC-ATPas 98.9 3E-10 1E-14 106.5 3.2 70 18-90 19-103 (250)
34 2ixe_A Antigen peptide transpo 98.9 2.3E-10 7.8E-15 109.1 2.4 72 18-92 35-117 (271)
35 3b60_A Lipid A export ATP-bind 98.9 1.5E-10 5.1E-15 120.0 1.1 73 17-92 358-441 (582)
36 2yz2_A Putative ABC transporte 98.9 2.6E-10 8.7E-15 108.1 2.6 86 18-106 23-123 (266)
37 3qf4_A ABC transporter, ATP-bi 98.9 2.2E-10 7.6E-15 119.5 1.0 72 18-92 359-441 (587)
38 3qf4_B Uncharacterized ABC tra 98.9 1.5E-10 5.2E-15 120.7 -0.3 73 17-92 370-453 (598)
39 2cbz_A Multidrug resistance-as 98.9 9.8E-10 3.3E-14 102.6 4.1 70 18-92 21-90 (237)
40 4f4c_A Multidrug resistance pr 98.8 8.6E-10 2.9E-14 125.1 2.5 72 17-91 1094-1176(1321)
41 2ihy_A ABC transporter, ATP-bi 98.8 9.9E-10 3.4E-14 105.5 2.5 64 25-91 44-123 (279)
42 2zu0_C Probable ATP-dependent 98.8 7.5E-10 2.6E-14 105.2 1.0 68 19-90 37-120 (267)
43 2bbs_A Cystic fibrosis transme 98.8 3.1E-09 1.1E-13 103.0 3.7 59 26-89 62-120 (290)
44 1u0l_A Probable GTPase ENGC; p 98.7 5.1E-09 1.7E-13 100.3 4.4 78 27-107 168-278 (301)
45 4f4c_A Multidrug resistance pr 98.7 2.1E-09 7.3E-14 121.9 0.9 84 18-105 434-529 (1321)
46 3g5u_A MCG1178, multidrug resi 98.7 1.8E-09 6.1E-14 122.2 -0.6 73 17-92 405-488 (1284)
47 3sop_A Neuronal-specific septi 98.6 9.7E-09 3.3E-13 97.9 3.2 60 30-92 4-72 (270)
48 2pjz_A Hypothetical protein ST 98.6 1.1E-08 3.7E-13 97.8 3.5 67 18-90 21-96 (263)
49 3g5u_A MCG1178, multidrug resi 98.6 1.2E-08 4E-13 115.7 2.5 73 17-92 1048-1131(1284)
50 1znw_A Guanylate kinase, GMP k 98.6 8E-09 2.7E-13 92.2 0.9 68 17-89 11-86 (207)
51 1htw_A HI0065; nucleotide-bind 98.5 1.7E-08 5.9E-13 89.6 1.4 70 17-90 22-97 (158)
52 3aez_A Pantothenate kinase; tr 98.5 3.6E-08 1.2E-12 96.1 2.9 74 25-108 87-166 (312)
53 4a74_A DNA repair and recombin 98.5 4.1E-08 1.4E-12 86.1 1.8 75 12-92 12-98 (231)
54 2npi_A Protein CLP1; CLP1-PCF1 98.4 8E-08 2.7E-12 98.8 2.5 62 26-91 136-205 (460)
55 1s96_A Guanylate kinase, GMP k 98.4 4.2E-08 1.4E-12 91.0 0.3 110 19-141 7-149 (219)
56 1z6g_A Guanylate kinase; struc 98.4 6.3E-08 2.2E-12 88.2 0.8 53 26-84 21-84 (218)
57 3bk7_A ABC transporter ATP-bin 98.3 1.1E-07 3.7E-12 100.9 2.0 58 26-88 380-438 (607)
58 3b85_A Phosphate starvation-in 98.3 1E-07 3.5E-12 87.9 0.4 35 26-63 20-54 (208)
59 2v9p_A Replication protein E1; 98.3 3.7E-07 1.3E-11 89.9 4.1 63 16-91 114-177 (305)
60 1rj9_A FTSY, signal recognitio 98.3 1.9E-07 6.5E-12 90.9 1.9 60 27-89 101-178 (304)
61 2yv5_A YJEQ protein; hydrolase 98.3 4.8E-07 1.6E-11 87.1 4.4 61 27-91 164-245 (302)
62 1yqt_A RNAse L inhibitor; ATP- 98.2 4.1E-07 1.4E-11 94.7 2.9 58 26-88 310-368 (538)
63 3tr0_A Guanylate kinase, GMP k 98.2 2E-07 6.9E-12 81.0 0.2 58 26-90 5-74 (205)
64 3szr_A Interferon-induced GTP- 98.2 4.7E-07 1.6E-11 95.4 2.8 75 11-88 25-118 (608)
65 3e70_C DPA, signal recognition 98.2 2.9E-07 1E-11 90.7 0.6 63 26-90 127-206 (328)
66 3c8u_A Fructokinase; YP_612366 98.1 1.4E-06 4.7E-11 77.9 3.0 52 12-65 6-58 (208)
67 3ozx_A RNAse L inhibitor; ATP 98.1 1.4E-06 4.7E-11 91.1 3.4 61 26-90 292-353 (538)
68 3b9q_A Chloroplast SRP recepto 98.0 8.1E-07 2.8E-11 86.3 1.0 61 26-89 98-177 (302)
69 1tq4_A IIGP1, interferon-induc 98.0 1.8E-06 6.2E-11 88.1 3.5 86 2-91 27-131 (413)
70 3asz_A Uridine kinase; cytidin 98.0 2.4E-06 8.1E-11 75.3 3.0 27 26-54 4-30 (211)
71 2qag_B Septin-6, protein NEDD5 98.0 3.8E-06 1.3E-10 86.6 5.0 71 18-92 30-107 (427)
72 1zp6_A Hypothetical protein AT 98.0 3.3E-06 1.1E-10 72.8 3.8 35 26-64 7-41 (191)
73 1sq5_A Pantothenate kinase; P- 98.0 1.8E-06 6.2E-11 82.7 1.8 36 26-63 78-115 (308)
74 1kgd_A CASK, peripheral plasma 98.0 4.3E-06 1.5E-10 73.3 3.9 29 25-54 2-30 (180)
75 1ex7_A Guanylate kinase; subst 97.9 5.3E-06 1.8E-10 76.2 3.6 27 28-55 1-27 (186)
76 2rcn_A Probable GTPase ENGC; Y 97.9 3.2E-06 1.1E-10 85.1 2.4 59 27-88 214-282 (358)
77 2gza_A Type IV secretion syste 97.9 7.5E-06 2.6E-10 80.8 4.8 44 19-64 166-209 (361)
78 2yhs_A FTSY, cell division pro 97.9 2E-06 7E-11 90.6 0.8 62 26-90 291-370 (503)
79 3a00_A Guanylate kinase, GMP k 97.9 5.4E-06 1.8E-10 72.8 3.3 25 28-53 1-25 (186)
80 3j16_B RLI1P; ribosome recycli 97.9 4.4E-06 1.5E-10 88.9 3.0 55 28-88 378-434 (608)
81 2og2_A Putative signal recogni 97.9 2.1E-06 7.1E-11 86.2 0.5 61 26-89 155-234 (359)
82 2eyu_A Twitching motility prot 97.9 4.5E-06 1.5E-10 79.2 2.5 53 17-75 16-69 (261)
83 2qm8_A GTPase/ATPase; G protei 97.9 5.5E-06 1.9E-10 81.1 3.1 66 16-84 43-123 (337)
84 2pt7_A CAG-ALFA; ATPase, prote 97.8 1E-05 3.4E-10 79.3 3.8 46 17-64 160-205 (330)
85 2bdt_A BH3686; alpha-beta prot 97.8 9.8E-06 3.3E-10 70.4 3.3 32 28-64 2-33 (189)
86 1lvg_A Guanylate kinase, GMP k 97.8 8E-06 2.8E-10 73.1 2.7 26 27-53 3-28 (198)
87 1pzn_A RAD51, DNA repair and r 97.8 8.6E-06 2.9E-10 80.2 3.1 75 12-92 118-204 (349)
88 2qor_A Guanylate kinase; phosp 97.8 1.3E-05 4.5E-10 71.1 4.0 33 21-54 5-37 (204)
89 2ehv_A Hypothetical protein PH 97.8 9E-06 3.1E-10 72.1 2.7 37 26-64 28-66 (251)
90 3tau_A Guanylate kinase, GMP k 97.7 1.7E-05 5.8E-10 71.2 4.1 29 25-54 5-33 (208)
91 3uie_A Adenylyl-sulfate kinase 97.7 7.3E-06 2.5E-10 72.6 1.5 39 23-64 20-60 (200)
92 2j41_A Guanylate kinase; GMP, 97.7 1.9E-05 6.6E-10 68.4 3.8 30 26-57 4-33 (207)
93 3lnc_A Guanylate kinase, GMP k 97.7 1.6E-05 5.4E-10 71.7 3.1 27 26-54 25-52 (231)
94 4gp7_A Metallophosphoesterase; 97.7 1.4E-05 4.8E-10 69.9 2.5 20 26-45 7-26 (171)
95 1odf_A YGR205W, hypothetical 3 97.7 1.4E-05 4.9E-10 77.2 2.7 70 12-89 15-84 (290)
96 3ozx_A RNAse L inhibitor; ATP 97.7 1.8E-05 6.2E-10 82.8 3.6 35 25-61 22-56 (538)
97 1rz3_A Hypothetical protein rb 97.7 2E-05 6.9E-10 70.2 3.3 41 11-53 4-45 (201)
98 3ney_A 55 kDa erythrocyte memb 97.7 2.5E-05 8.6E-10 72.6 3.9 29 25-54 16-44 (197)
99 1knq_A Gluconate kinase; ALFA/ 97.6 2.7E-05 9.4E-10 66.6 3.5 36 23-64 3-38 (175)
100 1t9h_A YLOQ, probable GTPase E 97.6 9.6E-06 3.3E-10 79.8 0.7 35 27-63 172-206 (307)
101 2bbw_A Adenylate kinase 4, AK4 97.6 1.5E-05 5.1E-10 72.7 1.7 34 25-60 24-60 (246)
102 4eun_A Thermoresistant glucoki 97.6 3.2E-05 1.1E-09 68.5 3.5 33 26-64 27-59 (200)
103 3j16_B RLI1P; ribosome recycli 97.6 3E-05 1E-09 82.6 3.7 35 25-61 100-134 (608)
104 1yqt_A RNAse L inhibitor; ATP- 97.6 3.5E-05 1.2E-09 80.3 4.1 34 25-60 44-77 (538)
105 2dpy_A FLII, flagellum-specifi 97.6 5.4E-05 1.8E-09 77.4 5.3 44 17-63 147-190 (438)
106 3ux8_A Excinuclease ABC, A sub 97.5 2.7E-05 9.3E-10 82.1 2.6 28 18-45 34-61 (670)
107 2jeo_A Uridine-cytidine kinase 97.5 3.3E-05 1.1E-09 70.8 2.8 35 17-53 14-48 (245)
108 1kag_A SKI, shikimate kinase I 97.5 4.4E-05 1.5E-09 64.8 3.2 25 27-53 3-27 (173)
109 3bk7_A ABC transporter ATP-bin 97.5 3.3E-05 1.1E-09 82.0 2.4 40 18-60 108-147 (607)
110 3euj_A Chromosome partition pr 97.5 2.8E-05 9.5E-10 81.3 1.8 34 29-64 30-63 (483)
111 4e22_A Cytidylate kinase; P-lo 97.4 1.9E-05 6.6E-10 73.3 -0.1 35 26-62 25-62 (252)
112 2i3b_A HCR-ntpase, human cance 97.4 2.7E-05 9.4E-10 70.8 0.7 33 28-64 1-33 (189)
113 1qhx_A CPT, protein (chloramph 97.4 9.6E-05 3.3E-09 63.0 4.0 27 27-54 2-28 (178)
114 2qag_C Septin-7; cell cycle, c 97.4 7E-05 2.4E-09 76.4 3.7 59 31-92 34-100 (418)
115 1nij_A Hypothetical protein YJ 97.4 6.2E-05 2.1E-09 72.6 2.9 34 29-64 5-46 (318)
116 2ewv_A Twitching motility prot 97.4 3.5E-05 1.2E-09 76.6 1.1 62 26-90 134-208 (372)
117 1tf7_A KAIC; homohexamer, hexa 97.3 6.3E-05 2.2E-09 77.1 2.6 38 26-65 37-76 (525)
118 1n0w_A DNA repair protein RAD5 97.3 0.00016 5.6E-09 63.9 4.8 50 12-65 11-66 (243)
119 1lw7_A Transcriptional regulat 97.3 2.7E-05 9.1E-10 75.9 -0.3 34 28-63 170-207 (365)
120 2obl_A ESCN; ATPase, hydrolase 97.3 0.00014 4.9E-09 72.1 4.7 40 17-59 61-100 (347)
121 2oap_1 GSPE-2, type II secreti 97.3 0.00013 4.6E-09 75.9 4.7 37 26-64 258-294 (511)
122 2vp4_A Deoxynucleoside kinase; 97.3 0.00012 4E-09 66.7 3.6 27 25-53 17-43 (230)
123 2iw3_A Elongation factor 3A; a 97.3 8E-05 2.7E-09 83.9 2.8 37 26-64 697-733 (986)
124 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4E-09 64.8 3.3 36 17-53 14-49 (199)
125 2qnr_A Septin-2, protein NEDD5 97.3 0.00015 5.1E-09 69.8 4.2 59 31-92 21-88 (301)
126 1p9r_A General secretion pathw 97.3 0.00014 5E-09 74.0 4.3 44 17-64 158-201 (418)
127 1ye8_A Protein THEP1, hypothet 97.3 0.00011 3.6E-09 65.9 2.7 23 30-54 2-24 (178)
128 3lda_A DNA repair protein RAD5 97.3 6.8E-05 2.3E-09 76.0 1.5 66 27-92 177-251 (400)
129 2iw3_A Elongation factor 3A; a 97.2 0.00024 8.4E-09 80.0 5.9 56 26-90 459-519 (986)
130 1ewq_A DNA mismatch repair pro 97.2 3.2E-05 1.1E-09 84.5 -1.3 74 10-92 557-636 (765)
131 2kjq_A DNAA-related protein; s 97.2 0.00016 5.3E-09 63.0 3.0 76 27-110 35-113 (149)
132 2f1r_A Molybdopterin-guanine d 97.2 4.4E-05 1.5E-09 68.7 -0.5 27 29-57 3-29 (171)
133 3kb2_A SPBC2 prophage-derived 97.2 0.00019 6.5E-09 60.1 3.2 24 29-53 2-25 (173)
134 3tqc_A Pantothenate kinase; bi 97.2 0.0003 1E-08 69.6 5.0 27 27-55 91-117 (321)
135 3ec2_A DNA replication protein 97.2 0.00026 9E-09 61.1 4.0 26 26-52 36-61 (180)
136 1gvn_B Zeta; postsegregational 97.1 0.00035 1.2E-08 66.8 5.0 29 25-54 30-58 (287)
137 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0002 6.7E-09 62.3 2.9 26 26-52 21-46 (235)
138 1sxj_E Activator 1 40 kDa subu 97.1 0.00035 1.2E-08 65.8 4.8 45 17-64 25-71 (354)
139 1qhl_A Protein (cell division 97.1 2.9E-05 1E-09 73.2 -2.7 59 29-90 28-87 (227)
140 1cr0_A DNA primase/helicase; R 97.1 0.0002 6.9E-09 66.8 3.0 33 25-59 32-64 (296)
141 2cvh_A DNA repair and recombin 97.1 0.0003 1E-08 61.3 3.7 35 26-64 18-52 (220)
142 2x8a_A Nuclear valosin-contain 97.1 0.00038 1.3E-08 66.0 4.6 54 31-90 47-114 (274)
143 1cke_A CK, MSSA, protein (cyti 97.1 0.00026 9.1E-09 62.5 3.3 23 28-52 5-27 (227)
144 3t61_A Gluconokinase; PSI-biol 97.1 0.00029 1E-08 61.9 3.4 26 27-53 17-42 (202)
145 3kta_A Chromosome segregation 97.0 0.00035 1.2E-08 60.1 3.5 24 28-53 26-49 (182)
146 1kht_A Adenylate kinase; phosp 97.0 0.0003 1E-08 59.8 3.1 26 28-54 3-28 (192)
147 3lw7_A Adenylate kinase relate 97.0 0.00035 1.2E-08 57.6 3.1 22 29-52 2-23 (179)
148 1ixz_A ATP-dependent metallopr 97.0 0.00065 2.2E-08 61.7 5.1 24 29-54 50-73 (254)
149 1pui_A ENGB, probable GTP-bind 97.0 0.00015 5E-09 62.8 0.8 25 26-51 24-48 (210)
150 1ly1_A Polynucleotide kinase; 97.0 0.00034 1.2E-08 59.0 3.0 23 28-51 2-24 (181)
151 2qt1_A Nicotinamide riboside k 97.0 0.00037 1.3E-08 61.4 3.3 24 27-52 20-43 (207)
152 3jvv_A Twitching mobility prot 96.9 0.00029 9.8E-09 70.3 2.1 29 26-56 121-149 (356)
153 2pez_A Bifunctional 3'-phospho 96.9 0.00044 1.5E-08 59.7 3.0 25 26-52 3-27 (179)
154 2rhm_A Putative kinase; P-loop 96.9 0.00044 1.5E-08 59.2 3.0 26 27-53 4-29 (193)
155 2dr3_A UPF0273 protein PH0284; 96.9 0.00052 1.8E-08 60.6 3.4 49 13-65 11-59 (247)
156 1svm_A Large T antigen; AAA+ f 96.9 0.0007 2.4E-08 68.3 4.7 38 14-53 155-192 (377)
157 2wwf_A Thymidilate kinase, put 96.9 0.00054 1.8E-08 59.7 3.4 29 25-54 7-35 (212)
158 1jjv_A Dephospho-COA kinase; P 96.9 0.00058 2E-08 60.0 3.5 30 29-65 3-32 (206)
159 2v54_A DTMP kinase, thymidylat 96.9 0.0007 2.4E-08 58.7 3.9 26 27-53 3-28 (204)
160 1jbk_A CLPB protein; beta barr 96.8 0.00097 3.3E-08 55.1 4.6 38 13-53 30-67 (195)
161 1iy2_A ATP-dependent metallopr 96.8 0.0011 3.6E-08 61.6 5.2 24 29-54 74-97 (278)
162 1nks_A Adenylate kinase; therm 96.8 0.0007 2.4E-08 57.5 3.7 25 30-55 3-27 (194)
163 1np6_A Molybdopterin-guanine d 96.8 0.00069 2.3E-08 61.2 3.8 26 28-54 6-31 (174)
164 1oix_A RAS-related protein RAB 96.8 0.00065 2.2E-08 59.2 3.5 23 30-53 31-53 (191)
165 4aby_A DNA repair protein RECN 96.8 0.00033 1.1E-08 68.1 1.7 25 27-54 60-84 (415)
166 1njg_A DNA polymerase III subu 96.8 0.001 3.6E-08 56.5 4.5 28 25-53 42-69 (250)
167 3nwj_A ATSK2; P loop, shikimat 96.8 0.00051 1.7E-08 65.3 2.8 34 17-52 34-70 (250)
168 3iij_A Coilin-interacting nucl 96.8 0.00075 2.6E-08 58.1 3.6 34 27-66 10-43 (180)
169 3trf_A Shikimate kinase, SK; a 96.8 0.00067 2.3E-08 58.3 3.2 26 27-53 4-29 (185)
170 1wb9_A DNA mismatch repair pro 96.8 0.00032 1.1E-08 77.0 1.5 42 9-53 583-630 (800)
171 3bos_A Putative DNA replicatio 96.7 0.0014 4.9E-08 56.9 5.0 37 27-64 51-87 (242)
172 2plr_A DTMP kinase, probable t 96.7 0.00072 2.5E-08 58.4 3.0 28 27-55 3-30 (213)
173 1gtv_A TMK, thymidylate kinase 96.7 0.00032 1.1E-08 61.3 0.8 24 30-54 2-25 (214)
174 2w58_A DNAI, primosome compone 96.7 0.0019 6.4E-08 56.4 5.7 35 29-64 55-89 (202)
175 3cm0_A Adenylate kinase; ATP-b 96.7 0.0006 2E-08 58.5 2.4 26 27-53 3-28 (186)
176 2qby_A CDC6 homolog 1, cell di 96.7 0.00094 3.2E-08 62.1 3.9 40 13-53 28-69 (386)
177 2yvu_A Probable adenylyl-sulfa 96.7 0.00097 3.3E-08 57.8 3.5 28 26-54 11-38 (186)
178 1m7g_A Adenylylsulfate kinase; 96.7 0.00033 1.1E-08 62.4 0.6 27 26-53 23-49 (211)
179 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.7E-08 61.3 4.0 32 21-53 22-53 (243)
180 2f9l_A RAB11B, member RAS onco 96.7 0.00082 2.8E-08 58.4 3.0 22 30-52 7-28 (199)
181 2if2_A Dephospho-COA kinase; a 96.7 0.00079 2.7E-08 58.9 2.8 30 30-66 3-32 (204)
182 3cr8_A Sulfate adenylyltranfer 96.7 0.0005 1.7E-08 72.6 1.8 46 12-59 352-398 (552)
183 1nn5_A Similar to deoxythymidy 96.7 0.00094 3.2E-08 58.2 3.2 28 26-54 7-34 (215)
184 1uf9_A TT1252 protein; P-loop, 96.7 0.001 3.6E-08 57.4 3.5 33 26-65 6-38 (203)
185 2c95_A Adenylate kinase 1; tra 96.6 0.00073 2.5E-08 58.0 2.5 27 26-53 7-33 (196)
186 2ged_A SR-beta, signal recogni 96.6 0.0011 3.9E-08 56.3 3.6 24 29-53 49-72 (193)
187 2p5t_B PEZT; postsegregational 96.6 0.0011 3.8E-08 61.3 3.8 29 25-54 29-57 (253)
188 2bwj_A Adenylate kinase 5; pho 96.6 0.00049 1.7E-08 59.2 1.1 26 27-53 11-36 (199)
189 4eaq_A DTMP kinase, thymidylat 96.6 0.0016 5.4E-08 60.2 4.6 30 25-55 23-52 (229)
190 1qf9_A UMP/CMP kinase, protein 96.6 0.0011 3.8E-08 56.3 3.3 26 27-53 5-30 (194)
191 2p65_A Hypothetical protein PF 96.6 0.0014 4.8E-08 54.5 3.9 38 13-53 30-67 (187)
192 2jaq_A Deoxyguanosine kinase; 96.6 0.001 3.4E-08 57.2 3.0 23 30-53 2-24 (205)
193 1y63_A LMAJ004144AAA protein; 96.6 0.0012 4.2E-08 57.7 3.6 36 26-66 8-43 (184)
194 2vli_A Antibiotic resistance p 96.6 0.0012 4.1E-08 56.2 3.2 27 27-54 4-30 (183)
195 1ukz_A Uridylate kinase; trans 96.5 0.0014 4.8E-08 57.3 3.6 27 26-53 13-39 (203)
196 2z0h_A DTMP kinase, thymidylat 96.5 0.0011 3.9E-08 56.9 2.9 24 30-54 2-25 (197)
197 1tev_A UMP-CMP kinase; ploop, 96.5 0.0012 4E-08 56.2 2.9 25 28-53 3-27 (196)
198 2wji_A Ferrous iron transport 96.5 0.0012 4.1E-08 55.7 2.9 22 30-52 5-26 (165)
199 1uj2_A Uridine-cytidine kinase 96.5 0.0012 4E-08 60.8 3.0 39 15-54 8-47 (252)
200 2zej_A Dardarin, leucine-rich 96.5 0.0011 3.7E-08 56.9 2.6 22 30-52 4-25 (184)
201 1nlf_A Regulatory protein REPA 96.5 0.0018 6.2E-08 60.2 4.2 25 27-52 29-53 (279)
202 1in4_A RUVB, holliday junction 96.5 0.0014 4.9E-08 63.0 3.4 25 27-53 50-74 (334)
203 1vht_A Dephospho-COA kinase; s 96.4 0.0014 4.9E-08 58.2 2.9 23 28-52 4-26 (218)
204 2wjg_A FEOB, ferrous iron tran 96.4 0.0016 5.4E-08 55.1 3.1 23 29-52 8-30 (188)
205 3thx_B DNA mismatch repair pro 96.4 0.00062 2.1E-08 76.1 0.6 41 9-51 646-694 (918)
206 1zak_A Adenylate kinase; ATP:A 96.4 0.0016 5.5E-08 58.1 3.1 26 27-53 4-29 (222)
207 1e6c_A Shikimate kinase; phosp 96.4 0.0018 6.3E-08 54.6 3.3 24 29-53 3-26 (173)
208 2chg_A Replication factor C sm 96.4 0.0029 9.8E-08 53.5 4.4 24 29-53 39-62 (226)
209 3n70_A Transport activator; si 96.4 0.0044 1.5E-07 52.5 5.5 40 12-53 8-47 (145)
210 1kao_A RAP2A; GTP-binding prot 96.4 0.0018 6.2E-08 52.6 3.0 23 30-53 5-27 (167)
211 2iyv_A Shikimate kinase, SK; t 96.4 0.0018 6.2E-08 55.7 3.1 25 28-53 2-26 (184)
212 3ux8_A Excinuclease ABC, A sub 96.3 0.0014 4.7E-08 69.2 2.8 20 26-45 346-365 (670)
213 1fnn_A CDC6P, cell division co 96.3 0.0044 1.5E-07 58.2 5.9 26 30-56 46-71 (389)
214 1via_A Shikimate kinase; struc 96.3 0.0019 6.4E-08 55.5 2.9 23 30-53 6-28 (175)
215 1w1w_A Structural maintenance 96.3 0.002 6.8E-08 64.1 3.5 29 27-57 25-53 (430)
216 1zd8_A GTP:AMP phosphotransfer 96.3 0.0021 7.3E-08 57.7 3.3 26 27-53 6-31 (227)
217 1z2a_A RAS-related protein RAB 96.3 0.002 7E-08 52.7 3.0 23 30-53 7-29 (168)
218 3fb4_A Adenylate kinase; psych 96.3 0.0021 7.3E-08 56.6 3.2 23 30-53 2-24 (216)
219 2cdn_A Adenylate kinase; phosp 96.3 0.0027 9.3E-08 55.7 3.9 27 26-53 18-44 (201)
220 2ze6_A Isopentenyl transferase 96.3 0.002 6.7E-08 60.2 3.1 24 29-53 2-25 (253)
221 3dl0_A Adenylate kinase; phosp 96.3 0.0025 8.4E-08 56.4 3.5 23 30-53 2-24 (216)
222 2dyk_A GTP-binding protein; GT 96.3 0.0022 7.4E-08 52.3 2.9 23 30-53 3-25 (161)
223 3pqc_A Probable GTP-binding pr 96.3 0.0025 8.7E-08 53.5 3.4 23 30-53 25-47 (195)
224 1ek0_A Protein (GTP-binding pr 96.2 0.0023 7.7E-08 52.3 3.0 22 31-53 6-27 (170)
225 2v1u_A Cell division control p 96.2 0.0027 9.1E-08 59.3 3.8 40 13-53 27-68 (387)
226 2ce2_X GTPase HRAS; signaling 96.2 0.0021 7.2E-08 51.9 2.8 22 31-53 6-27 (166)
227 2nzj_A GTP-binding protein REM 96.2 0.0021 7.3E-08 53.1 2.9 23 30-53 6-28 (175)
228 3ake_A Cytidylate kinase; CMP 96.2 0.0026 8.8E-08 55.1 3.4 24 29-53 3-26 (208)
229 1u8z_A RAS-related protein RAL 96.2 0.0024 8.1E-08 51.9 3.0 22 30-52 6-27 (168)
230 1ky3_A GTP-binding protein YPT 96.2 0.0023 7.9E-08 53.0 3.0 23 30-53 10-32 (182)
231 1xjc_A MOBB protein homolog; s 96.2 0.0024 8.3E-08 58.1 3.4 26 28-54 4-29 (169)
232 2lkc_A Translation initiation 96.2 0.0033 1.1E-07 52.3 3.9 26 26-52 6-31 (178)
233 2gj8_A MNME, tRNA modification 96.2 0.0022 7.4E-08 55.0 2.8 24 28-52 4-27 (172)
234 1c1y_A RAS-related protein RAP 96.2 0.0024 8.3E-08 52.2 3.0 22 30-52 5-26 (167)
235 1l8q_A Chromosomal replication 96.2 0.0042 1.4E-07 58.5 5.0 35 18-53 26-61 (324)
236 1vma_A Cell division protein F 96.2 0.0017 5.9E-08 63.5 2.4 35 26-62 102-136 (306)
237 2fn4_A P23, RAS-related protei 96.2 0.0023 8E-08 53.0 2.8 23 29-52 10-32 (181)
238 2pbr_A DTMP kinase, thymidylat 96.2 0.0023 8E-08 54.5 2.9 23 30-53 2-24 (195)
239 2erx_A GTP-binding protein DI- 96.2 0.0026 8.9E-08 52.0 3.0 22 30-52 5-26 (172)
240 1lv7_A FTSH; alpha/beta domain 96.2 0.003 1E-07 57.5 3.6 24 27-52 44-67 (257)
241 1z0j_A RAB-22, RAS-related pro 96.2 0.0026 9.1E-08 52.1 3.0 23 30-53 8-30 (170)
242 2zts_A Putative uncharacterize 96.2 0.0026 8.9E-08 56.1 3.1 40 27-66 29-68 (251)
243 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0027 9.1E-08 52.8 3.0 23 30-53 9-31 (177)
244 1z08_A RAS-related protein RAB 96.1 0.0026 9E-08 52.3 2.9 22 30-52 8-29 (170)
245 1g16_A RAS-related protein SEC 96.1 0.0025 8.7E-08 52.2 2.7 22 30-52 5-26 (170)
246 2qen_A Walker-type ATPase; unk 96.1 0.0063 2.1E-07 56.0 5.6 50 6-65 12-62 (350)
247 2ius_A DNA translocase FTSK; n 96.1 0.0094 3.2E-07 62.9 7.4 79 29-114 168-250 (512)
248 3clv_A RAB5 protein, putative; 96.1 0.0029 1E-07 52.8 3.0 22 30-52 9-30 (208)
249 1r2q_A RAS-related protein RAB 96.1 0.003 1E-07 51.6 3.0 22 30-52 8-29 (170)
250 3bc1_A RAS-related protein RAB 96.1 0.003 1E-07 52.8 3.0 23 30-53 13-35 (195)
251 2bjv_A PSP operon transcriptio 96.1 0.0086 2.9E-07 54.7 6.3 42 12-54 13-54 (265)
252 1r8s_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 51.7 3.0 21 31-52 3-23 (164)
253 1sxj_D Activator 1 41 kDa subu 96.1 0.0043 1.5E-07 57.9 4.2 48 3-53 24-82 (353)
254 3thx_A DNA mismatch repair pro 96.1 0.0011 3.7E-08 74.2 0.3 39 10-50 638-682 (934)
255 1upt_A ARL1, ADP-ribosylation 96.1 0.0032 1.1E-07 51.9 3.0 24 29-53 8-31 (171)
256 3q85_A GTP-binding protein REM 96.0 0.0032 1.1E-07 51.9 2.9 20 31-51 5-24 (169)
257 1ltq_A Polynucleotide kinase; 96.0 0.003 1E-07 58.6 3.0 24 28-52 2-25 (301)
258 1fzq_A ADP-ribosylation factor 96.0 0.0034 1.2E-07 53.8 3.1 26 26-52 14-39 (181)
259 2www_A Methylmalonic aciduria 96.0 0.0038 1.3E-07 61.4 3.7 36 27-64 73-108 (349)
260 3q72_A GTP-binding protein RAD 96.0 0.0025 8.7E-08 52.4 2.1 23 30-53 4-26 (166)
261 2hxs_A RAB-26, RAS-related pro 96.0 0.0038 1.3E-07 51.9 3.2 22 30-52 8-29 (178)
262 1a7j_A Phosphoribulokinase; tr 96.0 0.0027 9.4E-08 61.0 2.6 26 27-53 4-29 (290)
263 3tw8_B RAS-related protein RAB 96.0 0.0028 9.6E-08 52.5 2.3 22 30-52 11-32 (181)
264 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0035 1.2E-07 52.4 3.0 23 30-53 6-28 (189)
265 2y8e_A RAB-protein 6, GH09086P 96.0 0.0034 1.2E-07 51.9 2.8 22 30-52 16-37 (179)
266 2cxx_A Probable GTP-binding pr 96.0 0.0031 1.1E-07 52.9 2.6 21 31-52 4-24 (190)
267 3ihw_A Centg3; RAS, centaurin, 95.9 0.0036 1.2E-07 54.2 2.9 23 30-53 22-44 (184)
268 1svi_A GTP-binding protein YSX 95.9 0.005 1.7E-07 52.3 3.7 24 28-52 23-46 (195)
269 1q3t_A Cytidylate kinase; nucl 95.9 0.0041 1.4E-07 56.4 3.5 24 27-52 15-38 (236)
270 3k1j_A LON protease, ATP-depen 95.9 0.0053 1.8E-07 64.2 4.7 29 27-57 59-87 (604)
271 3b9p_A CG5977-PA, isoform A; A 95.9 0.0042 1.4E-07 57.4 3.5 25 27-52 53-77 (297)
272 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0071 2.4E-07 54.2 4.8 26 27-53 38-63 (262)
273 2fna_A Conserved hypothetical 95.9 0.0082 2.8E-07 55.2 5.4 25 29-54 31-55 (357)
274 1aky_A Adenylate kinase; ATP:A 95.9 0.0044 1.5E-07 55.2 3.4 26 27-53 3-28 (220)
275 2px0_A Flagellar biosynthesis 95.9 0.0026 8.9E-08 61.5 2.1 27 26-53 103-129 (296)
276 2a9k_A RAS-related protein RAL 95.9 0.004 1.4E-07 51.8 3.0 22 30-52 20-41 (187)
277 2pt5_A Shikimate kinase, SK; a 95.9 0.0039 1.3E-07 52.6 2.9 23 30-53 2-24 (168)
278 1f6b_A SAR1; gtpases, N-termin 95.9 0.0032 1.1E-07 55.1 2.5 21 30-51 27-47 (198)
279 1z0f_A RAB14, member RAS oncog 95.9 0.0041 1.4E-07 51.4 3.0 23 30-53 17-39 (179)
280 2g6b_A RAS-related protein RAB 95.9 0.0042 1.4E-07 51.8 3.0 23 30-53 12-34 (180)
281 2oil_A CATX-8, RAS-related pro 95.9 0.0042 1.4E-07 53.0 3.0 23 30-53 27-49 (193)
282 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.0044 1.5E-07 51.7 3.0 22 30-52 7-28 (186)
283 3zvl_A Bifunctional polynucleo 95.8 0.0048 1.6E-07 61.9 3.8 27 26-53 256-282 (416)
284 2o8b_B DNA mismatch repair pro 95.8 0.0019 6.4E-08 72.8 0.9 46 28-88 789-835 (1022)
285 2bme_A RAB4A, RAS-related prot 95.8 0.0041 1.4E-07 52.2 2.8 23 30-53 12-34 (186)
286 3lv8_A DTMP kinase, thymidylat 95.8 0.0041 1.4E-07 58.9 3.1 34 21-55 20-53 (236)
287 2efe_B Small GTP-binding prote 95.8 0.0044 1.5E-07 51.6 2.9 22 30-52 14-35 (181)
288 2wsm_A Hydrogenase expression/ 95.8 0.0071 2.4E-07 53.0 4.3 27 27-54 29-55 (221)
289 3foz_A TRNA delta(2)-isopenten 95.8 0.0048 1.6E-07 62.0 3.6 28 25-53 7-34 (316)
290 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0064 2.2E-07 61.9 4.5 39 12-52 6-46 (359)
291 3kkq_A RAS-related protein M-R 95.8 0.0047 1.6E-07 51.9 3.0 22 30-52 20-41 (183)
292 1zu4_A FTSY; GTPase, signal re 95.8 0.0032 1.1E-07 61.7 2.2 27 26-53 103-129 (320)
293 2hf9_A Probable hydrogenase ni 95.8 0.0086 2.9E-07 52.6 4.8 27 27-54 37-63 (226)
294 4gzl_A RAS-related C3 botulinu 95.8 0.0046 1.6E-07 54.2 3.0 22 30-52 32-53 (204)
295 2bov_A RAla, RAS-related prote 95.8 0.0047 1.6E-07 52.7 3.0 22 30-52 16-37 (206)
296 1nrj_B SR-beta, signal recogni 95.8 0.0047 1.6E-07 53.9 3.0 24 29-53 13-36 (218)
297 3m6a_A ATP-dependent protease 95.8 0.0065 2.2E-07 63.2 4.5 29 27-57 107-135 (543)
298 3t5g_A GTP-binding protein RHE 95.8 0.0045 1.5E-07 51.9 2.8 22 30-52 8-29 (181)
299 2p67_A LAO/AO transport system 95.8 0.0072 2.5E-07 58.8 4.6 37 16-53 44-80 (341)
300 2orw_A Thymidine kinase; TMTK, 95.8 0.0056 1.9E-07 54.9 3.5 25 27-51 2-26 (184)
301 3bwd_D RAC-like GTP-binding pr 95.8 0.0051 1.7E-07 51.3 3.0 22 30-52 10-31 (182)
302 3con_A GTPase NRAS; structural 95.7 0.005 1.7E-07 52.2 3.0 23 30-53 23-45 (190)
303 3t1o_A Gliding protein MGLA; G 95.7 0.0054 1.8E-07 51.5 3.1 26 30-56 16-41 (198)
304 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.0047 1.6E-07 53.6 2.9 22 27-49 22-43 (149)
305 3tkl_A RAS-related protein RAB 95.7 0.0051 1.7E-07 52.1 3.0 23 30-53 18-40 (196)
306 3r20_A Cytidylate kinase; stru 95.7 0.0049 1.7E-07 58.5 3.2 25 27-52 8-32 (233)
307 2f6r_A COA synthase, bifunctio 95.7 0.0047 1.6E-07 58.6 3.1 24 27-52 74-97 (281)
308 3lxx_A GTPase IMAP family memb 95.7 0.0048 1.6E-07 55.7 3.0 23 30-53 31-53 (239)
309 3uk6_A RUVB-like 2; hexameric 95.7 0.008 2.7E-07 56.9 4.6 33 21-54 63-95 (368)
310 2iwr_A Centaurin gamma 1; ANK 95.7 0.0041 1.4E-07 52.0 2.2 22 30-52 9-30 (178)
311 1moz_A ARL1, ADP-ribosylation 95.7 0.0033 1.1E-07 52.7 1.6 24 27-51 17-40 (183)
312 1m7b_A RND3/RHOE small GTP-bin 95.7 0.005 1.7E-07 52.5 2.8 22 30-52 9-30 (184)
313 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0051 1.8E-07 57.2 3.0 25 28-53 4-28 (260)
314 3p32_A Probable GTPase RV1496/ 95.7 0.012 4.2E-07 57.4 5.7 40 26-66 77-116 (355)
315 1sxj_C Activator 1 40 kDa subu 95.7 0.004 1.4E-07 59.3 2.3 21 31-52 49-69 (340)
316 1zuh_A Shikimate kinase; alpha 95.7 0.0058 2E-07 51.9 3.0 25 28-53 7-31 (168)
317 1x3s_A RAS-related protein RAB 95.6 0.0059 2E-07 51.5 3.0 23 30-53 17-39 (195)
318 1vg8_A RAS-related protein RAB 95.6 0.0058 2E-07 52.4 3.0 23 30-53 10-32 (207)
319 2gf9_A RAS-related protein RAB 95.6 0.0059 2E-07 52.1 3.0 23 30-53 24-46 (189)
320 1ksh_A ARF-like protein 2; sma 95.6 0.0052 1.8E-07 51.9 2.7 24 29-53 19-42 (186)
321 1zbd_A Rabphilin-3A; G protein 95.6 0.0058 2E-07 52.5 3.0 23 30-53 10-32 (203)
322 1ls1_A Signal recognition part 95.6 0.0039 1.3E-07 60.1 2.1 33 27-61 97-129 (295)
323 3h4m_A Proteasome-activating n 95.6 0.0067 2.3E-07 55.5 3.5 26 26-52 49-74 (285)
324 1z06_A RAS-related protein RAB 95.6 0.006 2E-07 52.0 3.0 22 30-52 22-43 (189)
325 1m2o_B GTP-binding protein SAR 95.6 0.0056 1.9E-07 53.0 2.8 23 29-52 24-46 (190)
326 2a5j_A RAS-related protein RAB 95.6 0.0062 2.1E-07 52.2 3.0 23 30-53 23-45 (191)
327 3cf0_A Transitional endoplasmi 95.6 0.0068 2.3E-07 57.4 3.5 25 26-52 47-71 (301)
328 1hqc_A RUVB; extended AAA-ATPa 95.6 0.007 2.4E-07 56.1 3.5 27 26-53 36-62 (324)
329 3syl_A Protein CBBX; photosynt 95.6 0.0088 3E-07 55.2 4.1 28 25-53 64-91 (309)
330 4bas_A ADP-ribosylation factor 95.6 0.0052 1.8E-07 52.2 2.4 24 29-53 18-41 (199)
331 3crm_A TRNA delta(2)-isopenten 95.6 0.0066 2.3E-07 60.6 3.5 34 27-66 4-37 (323)
332 1v5w_A DMC1, meiotic recombina 95.6 0.012 4E-07 57.5 5.2 40 27-66 121-165 (343)
333 3c5c_A RAS-like protein 12; GD 95.5 0.0065 2.2E-07 52.4 3.0 23 30-53 23-45 (187)
334 3co5_A Putative two-component 95.5 0.0047 1.6E-07 52.4 2.0 39 12-52 11-49 (143)
335 3exa_A TRNA delta(2)-isopenten 95.5 0.0065 2.2E-07 61.2 3.4 25 28-53 3-27 (322)
336 3t15_A Ribulose bisphosphate c 95.5 0.01 3.5E-07 56.3 4.6 40 13-53 19-60 (293)
337 2gf0_A GTP-binding protein DI- 95.5 0.0062 2.1E-07 51.7 2.7 22 30-52 10-31 (199)
338 2fg5_A RAB-22B, RAS-related pr 95.5 0.0061 2.1E-07 52.4 2.7 23 30-53 25-47 (192)
339 1zj6_A ADP-ribosylation factor 95.5 0.0065 2.2E-07 51.7 2.8 24 28-52 16-39 (187)
340 2ocp_A DGK, deoxyguanosine kin 95.5 0.0071 2.4E-07 54.9 3.3 26 28-54 2-27 (241)
341 3dz8_A RAS-related protein RAB 95.5 0.0064 2.2E-07 52.1 2.8 23 30-53 25-47 (191)
342 2atv_A RERG, RAS-like estrogen 95.5 0.0068 2.3E-07 52.1 3.0 22 30-52 30-51 (196)
343 4edh_A DTMP kinase, thymidylat 95.5 0.0064 2.2E-07 56.2 2.9 28 27-55 5-32 (213)
344 2fh5_B SR-beta, signal recogni 95.5 0.0069 2.3E-07 52.7 3.0 24 29-53 8-31 (214)
345 4dhe_A Probable GTP-binding pr 95.5 0.0044 1.5E-07 54.0 1.8 23 29-52 30-52 (223)
346 3cbq_A GTP-binding protein REM 95.5 0.0054 1.9E-07 53.7 2.3 20 30-50 25-44 (195)
347 3pfi_A Holliday junction ATP-d 95.5 0.014 4.8E-07 54.9 5.2 27 25-52 52-78 (338)
348 3reg_A RHO-like small GTPase; 95.5 0.0071 2.4E-07 51.8 3.0 23 30-53 25-47 (194)
349 2z43_A DNA repair and recombin 95.5 0.013 4.4E-07 56.4 5.1 39 27-66 106-150 (324)
350 1zd9_A ADP-ribosylation factor 95.5 0.0072 2.4E-07 51.8 3.0 22 30-52 24-45 (188)
351 1tf7_A KAIC; homohexamer, hexa 95.5 0.0059 2E-07 62.7 2.9 26 26-53 279-304 (525)
352 3cph_A RAS-related protein SEC 95.4 0.0074 2.5E-07 51.9 3.0 22 30-52 22-43 (213)
353 2bcg_Y Protein YP2, GTP-bindin 95.4 0.0069 2.3E-07 52.4 2.7 23 30-53 10-32 (206)
354 3v9p_A DTMP kinase, thymidylat 95.4 0.0064 2.2E-07 57.2 2.8 28 26-54 23-50 (227)
355 2xb4_A Adenylate kinase; ATP-b 95.4 0.0069 2.4E-07 54.8 2.9 23 30-53 2-24 (223)
356 3a8t_A Adenylate isopentenyltr 95.4 0.0081 2.8E-07 60.6 3.6 79 26-110 38-129 (339)
357 2p5s_A RAS and EF-hand domain 95.4 0.0077 2.6E-07 52.1 3.0 22 30-52 30-51 (199)
358 3d3q_A TRNA delta(2)-isopenten 95.4 0.0076 2.6E-07 60.6 3.4 25 29-54 8-32 (340)
359 2q3h_A RAS homolog gene family 95.4 0.0076 2.6E-07 51.7 2.9 22 30-52 22-43 (201)
360 3oes_A GTPase rhebl1; small GT 95.4 0.0072 2.5E-07 52.3 2.8 23 30-53 26-48 (201)
361 2qby_B CDC6 homolog 3, cell di 95.4 0.011 3.6E-07 55.9 4.1 27 26-53 43-69 (384)
362 3llu_A RAS-related GTP-binding 95.4 0.0077 2.6E-07 52.1 2.9 24 30-54 22-45 (196)
363 1e4v_A Adenylate kinase; trans 95.4 0.0066 2.2E-07 54.0 2.5 23 30-53 2-24 (214)
364 2h17_A ADP-ribosylation factor 95.4 0.0066 2.3E-07 51.6 2.4 22 30-52 23-44 (181)
365 2o52_A RAS-related protein RAB 95.4 0.0071 2.4E-07 52.7 2.7 22 30-52 27-48 (200)
366 1ni3_A YCHF GTPase, YCHF GTP-b 95.4 0.011 3.9E-07 60.0 4.6 26 25-51 17-42 (392)
367 2ew1_A RAS-related protein RAB 95.4 0.0098 3.3E-07 52.7 3.6 23 30-53 28-50 (201)
368 2fu5_C RAS-related protein RAB 95.4 0.0049 1.7E-07 51.8 1.5 22 30-52 10-31 (183)
369 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.007 2.4E-07 59.8 2.9 18 28-45 23-40 (365)
370 4fcw_A Chaperone protein CLPB; 95.4 0.015 5.1E-07 53.6 4.8 23 29-53 48-70 (311)
371 2cjw_A GTP-binding protein GEM 95.3 0.0084 2.9E-07 52.3 3.0 21 30-51 8-28 (192)
372 3umf_A Adenylate kinase; rossm 95.3 0.0086 2.9E-07 56.1 3.1 28 25-53 26-53 (217)
373 2b6h_A ADP-ribosylation factor 95.3 0.01 3.4E-07 51.5 3.3 23 29-52 30-52 (192)
374 2f7s_A C25KG, RAS-related prot 95.3 0.0087 3E-07 52.1 2.9 22 30-52 27-48 (217)
375 2il1_A RAB12; G-protein, GDP, 95.3 0.0074 2.5E-07 52.1 2.4 21 31-52 29-49 (192)
376 3eph_A TRNA isopentenyltransfe 95.3 0.029 9.8E-07 58.1 7.1 25 29-54 3-27 (409)
377 3tmk_A Thymidylate kinase; pho 95.3 0.0096 3.3E-07 55.7 3.3 28 27-55 4-31 (216)
378 1jr3_A DNA polymerase III subu 95.3 0.014 4.9E-07 54.8 4.5 28 25-53 35-62 (373)
379 1ak2_A Adenylate kinase isoenz 95.3 0.011 3.7E-07 53.6 3.5 26 27-53 15-40 (233)
380 1h65_A Chloroplast outer envel 95.2 0.011 3.8E-07 54.8 3.7 24 29-53 40-63 (270)
381 2qgz_A Helicase loader, putati 95.2 0.017 5.7E-07 55.8 5.0 37 27-64 151-188 (308)
382 2atx_A Small GTP binding prote 95.2 0.0089 3E-07 51.0 2.7 22 30-52 20-41 (194)
383 4tmk_A Protein (thymidylate ki 95.2 0.0093 3.2E-07 55.3 3.0 28 27-55 2-29 (213)
384 2h57_A ADP-ribosylation factor 95.2 0.0064 2.2E-07 51.9 1.8 23 30-53 23-45 (190)
385 3hr8_A Protein RECA; alpha and 95.2 0.0088 3E-07 60.1 3.0 38 27-65 60-97 (356)
386 1e69_A Chromosome segregation 95.2 0.0094 3.2E-07 57.2 3.1 24 27-52 23-46 (322)
387 2z4s_A Chromosomal replication 95.2 0.012 4.2E-07 59.4 4.1 24 28-52 130-153 (440)
388 1ofh_A ATP-dependent HSL prote 95.2 0.014 4.8E-07 53.3 4.1 27 26-53 48-74 (310)
389 3qks_A DNA double-strand break 95.1 0.0096 3.3E-07 53.9 2.9 19 27-45 22-40 (203)
390 3be4_A Adenylate kinase; malar 95.1 0.0091 3.1E-07 53.5 2.7 25 28-53 5-29 (217)
391 1p5z_B DCK, deoxycytidine kina 95.1 0.0071 2.4E-07 55.7 2.0 26 27-53 23-48 (263)
392 2h92_A Cytidylate kinase; ross 95.1 0.011 3.7E-07 52.2 3.1 25 28-53 3-27 (219)
393 2qu8_A Putative nucleolar GTP- 95.1 0.011 3.7E-07 52.7 3.1 23 29-52 30-52 (228)
394 2zr9_A Protein RECA, recombina 95.1 0.011 3.8E-07 58.5 3.4 39 27-66 60-98 (349)
395 2j1l_A RHO-related GTP-binding 95.1 0.0096 3.3E-07 52.5 2.7 22 30-52 36-57 (214)
396 2fv8_A H6, RHO-related GTP-bin 95.1 0.01 3.4E-07 51.8 2.7 22 30-52 27-48 (207)
397 1gwn_A RHO-related GTP-binding 95.1 0.01 3.5E-07 52.6 2.8 23 30-53 30-52 (205)
398 2qmh_A HPR kinase/phosphorylas 95.1 0.011 3.7E-07 56.4 3.0 25 27-52 33-57 (205)
399 1ega_A Protein (GTP-binding pr 95.0 0.011 3.8E-07 56.6 3.1 24 28-52 8-31 (301)
400 3hws_A ATP-dependent CLP prote 95.0 0.031 1.1E-06 53.8 6.2 25 27-53 50-74 (363)
401 3k53_A Ferrous iron transport 95.0 0.011 3.7E-07 54.9 2.8 23 29-52 4-26 (271)
402 2j0v_A RAC-like GTP-binding pr 95.0 0.011 3.9E-07 51.2 2.8 23 30-53 11-33 (212)
403 2r62_A Cell division protease 95.0 0.0071 2.4E-07 55.0 1.5 25 27-52 43-67 (268)
404 3qkt_A DNA double-strand break 95.0 0.011 3.8E-07 57.2 2.9 22 27-49 22-43 (339)
405 3bh0_A DNAB-like replicative h 94.9 0.024 8.4E-07 54.5 5.1 38 26-64 66-103 (315)
406 2xtp_A GTPase IMAP family memb 94.9 0.012 4E-07 53.7 2.7 23 29-52 23-45 (260)
407 3llm_A ATP-dependent RNA helic 94.9 0.016 5.4E-07 52.6 3.6 25 27-51 75-99 (235)
408 2yc2_C IFT27, small RAB-relate 94.9 0.0054 1.9E-07 52.2 0.5 22 30-52 22-43 (208)
409 2aka_B Dynamin-1; fusion prote 94.9 0.023 7.8E-07 52.2 4.7 40 12-52 6-49 (299)
410 2gco_A H9, RHO-related GTP-bin 94.9 0.013 4.3E-07 51.0 2.8 22 30-52 27-48 (201)
411 1mky_A Probable GTP-binding pr 94.9 0.012 4.2E-07 58.9 3.0 22 30-52 182-203 (439)
412 3q3j_B RHO-related GTP-binding 94.8 0.014 4.8E-07 51.8 3.0 22 30-52 29-50 (214)
413 3cpj_B GTP-binding protein YPT 94.8 0.014 4.7E-07 51.7 2.9 23 30-53 15-37 (223)
414 2chq_A Replication factor C sm 94.8 0.027 9.2E-07 51.5 4.9 23 30-53 40-62 (319)
415 2grj_A Dephospho-COA kinase; T 94.8 0.012 4.2E-07 53.5 2.6 33 28-66 12-44 (192)
416 2x77_A ADP-ribosylation factor 94.8 0.0078 2.7E-07 51.1 1.2 22 29-51 23-44 (189)
417 2o5v_A DNA replication and rep 94.8 0.011 3.7E-07 59.3 2.4 22 29-52 27-48 (359)
418 2hup_A RAS-related protein RAB 94.8 0.013 4.6E-07 51.1 2.7 22 30-52 31-52 (201)
419 1j8m_F SRP54, signal recogniti 94.8 0.022 7.4E-07 55.2 4.4 26 28-54 98-123 (297)
420 4ag6_A VIRB4 ATPase, type IV s 94.8 0.021 7.3E-07 55.7 4.4 27 27-54 34-60 (392)
421 1ypw_A Transitional endoplasmi 94.8 0.018 6.1E-07 62.8 4.3 27 26-54 236-262 (806)
422 1yrb_A ATP(GTP)binding protein 94.8 0.024 8.3E-07 51.0 4.4 39 26-66 12-50 (262)
423 1ojl_A Transcriptional regulat 94.8 0.033 1.1E-06 53.3 5.6 40 12-52 9-48 (304)
424 3def_A T7I23.11 protein; chlor 94.7 0.019 6.5E-07 53.1 3.6 23 29-52 37-59 (262)
425 3tqf_A HPR(Ser) kinase; transf 94.7 0.017 5.8E-07 54.4 3.2 23 25-47 13-35 (181)
426 3ld9_A DTMP kinase, thymidylat 94.6 0.016 5.4E-07 54.7 2.9 28 26-54 19-46 (223)
427 3lxw_A GTPase IMAP family memb 94.6 0.016 5.6E-07 53.5 3.0 23 30-53 23-45 (247)
428 1um8_A ATP-dependent CLP prote 94.6 0.033 1.1E-06 53.8 5.2 27 26-53 70-96 (376)
429 1d2n_A N-ethylmaleimide-sensit 94.6 0.015 5E-07 53.5 2.5 26 26-52 62-87 (272)
430 3eie_A Vacuolar protein sortin 94.5 0.024 8.3E-07 54.0 3.9 25 27-52 50-74 (322)
431 2e87_A Hypothetical protein PH 94.5 0.021 7.3E-07 55.5 3.6 25 27-52 166-190 (357)
432 3d8b_A Fidgetin-like protein 1 94.5 0.041 1.4E-06 53.5 5.5 26 26-52 115-140 (357)
433 2r6a_A DNAB helicase, replicat 94.5 0.031 1.1E-06 56.3 4.8 26 26-51 201-226 (454)
434 1sxj_B Activator 1 37 kDa subu 94.4 0.036 1.2E-06 50.7 4.7 22 31-53 45-66 (323)
435 4djt_A GTP-binding nuclear pro 94.4 0.0076 2.6E-07 52.5 0.3 22 30-52 13-34 (218)
436 3gj0_A GTP-binding nuclear pro 94.4 0.0096 3.3E-07 52.3 0.9 20 30-50 17-36 (221)
437 3t5d_A Septin-7; GTP-binding p 94.4 0.015 5.2E-07 54.1 2.2 21 30-51 10-30 (274)
438 3sr0_A Adenylate kinase; phosp 94.4 0.021 7.1E-07 52.6 3.0 23 30-53 2-24 (206)
439 1iqp_A RFCS; clamp loader, ext 94.3 0.028 9.4E-07 51.6 3.8 23 30-53 48-70 (327)
440 1ko7_A HPR kinase/phosphatase; 94.3 0.018 6E-07 57.5 2.7 24 27-51 143-166 (314)
441 1xx6_A Thymidine kinase; NESG, 94.3 0.027 9.3E-07 51.6 3.7 28 25-52 5-32 (191)
442 2g3y_A GTP-binding protein GEM 94.3 0.021 7.3E-07 51.9 2.9 21 30-51 39-59 (211)
443 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.026 8.9E-07 54.4 3.7 26 27-53 44-69 (322)
444 2dhr_A FTSH; AAA+ protein, hex 94.2 0.037 1.3E-06 57.8 4.9 76 28-108 64-162 (499)
445 1jwy_B Dynamin A GTPase domain 94.2 0.032 1.1E-06 51.9 4.0 24 28-52 24-47 (315)
446 2b8t_A Thymidine kinase; deoxy 94.2 0.025 8.6E-07 53.3 3.3 28 25-52 9-36 (223)
447 2qag_A Septin-2, protein NEDD5 94.1 0.018 6.2E-07 56.8 2.2 21 31-52 40-60 (361)
448 2q6t_A DNAB replication FORK h 94.1 0.036 1.2E-06 55.8 4.4 40 26-65 198-237 (444)
449 3kl4_A SRP54, signal recogniti 94.1 0.022 7.6E-07 58.8 2.9 27 27-54 96-122 (433)
450 3pih_A Uvrabc system protein A 94.1 0.02 6.7E-07 64.3 2.7 20 26-45 608-627 (916)
451 4hlc_A DTMP kinase, thymidylat 94.1 0.027 9.1E-07 51.7 3.1 28 27-55 1-28 (205)
452 2ffh_A Protein (FFH); SRP54, s 94.1 0.022 7.5E-07 58.6 2.8 26 27-53 97-122 (425)
453 3iev_A GTP-binding protein ERA 94.1 0.02 6.9E-07 54.8 2.4 27 25-52 7-33 (308)
454 2wkq_A NPH1-1, RAS-related C3 94.1 0.029 9.8E-07 51.7 3.3 26 26-52 153-178 (332)
455 3th5_A RAS-related C3 botulinu 93.1 0.0092 3.2E-07 51.6 0.0 22 30-52 32-53 (204)
456 2qtf_A Protein HFLX, GTP-bindi 94.0 0.025 8.4E-07 56.3 2.9 24 28-52 178-202 (364)
457 3t34_A Dynamin-related protein 94.0 0.028 9.5E-07 54.5 3.2 22 29-51 35-56 (360)
458 3u61_B DNA polymerase accessor 94.0 0.049 1.7E-06 51.0 4.7 29 24-53 44-72 (324)
459 1udx_A The GTP-binding protein 93.9 0.022 7.7E-07 58.1 2.5 24 27-51 156-179 (416)
460 2c9o_A RUVB-like 1; hexameric 93.9 0.047 1.6E-06 55.0 4.8 25 26-52 61-85 (456)
461 3b1v_A Ferrous iron uptake tra 93.9 0.027 9.2E-07 53.6 2.9 22 30-52 5-26 (272)
462 3l0i_B RAS-related protein RAB 93.9 0.0083 2.8E-07 51.9 -0.7 22 30-52 35-56 (199)
463 2i1q_A DNA repair and recombin 93.8 0.039 1.3E-06 52.4 3.8 25 27-51 97-121 (322)
464 1knx_A Probable HPR(Ser) kinas 93.8 0.023 7.9E-07 56.7 2.3 24 27-51 146-169 (312)
465 1w5s_A Origin recognition comp 93.8 0.023 8E-07 53.9 2.2 27 26-53 48-76 (412)
466 1wf3_A GTP-binding protein; GT 93.8 0.03 1E-06 53.9 3.0 23 29-52 8-30 (301)
467 1z6t_A APAF-1, apoptotic prote 93.8 0.047 1.6E-06 55.3 4.5 37 14-51 133-169 (591)
468 1sxj_A Activator 1 95 kDa subu 93.8 0.036 1.2E-06 56.7 3.7 25 28-53 77-101 (516)
469 3vfd_A Spastin; ATPase, microt 93.7 0.037 1.2E-06 54.1 3.5 25 27-52 147-171 (389)
470 4dkx_A RAS-related protein RAB 93.7 0.036 1.2E-06 50.8 3.3 22 30-52 15-36 (216)
471 2qp9_X Vacuolar protein sortin 93.7 0.04 1.4E-06 53.8 3.8 26 27-53 83-108 (355)
472 1g8f_A Sulfate adenylyltransfe 93.6 0.037 1.3E-06 58.3 3.5 43 11-54 377-420 (511)
473 2gks_A Bifunctional SAT/APS ki 93.6 0.043 1.5E-06 57.7 4.0 42 11-53 354-396 (546)
474 2vf7_A UVRA2, excinuclease ABC 93.6 0.024 8.2E-07 63.1 2.2 20 26-45 521-540 (842)
475 1tue_A Replication protein E1; 93.5 0.046 1.6E-06 52.4 3.6 41 11-53 42-82 (212)
476 2ygr_A Uvrabc system protein A 93.4 0.024 8.1E-07 64.4 1.9 20 26-45 666-685 (993)
477 3a1s_A Iron(II) transport prot 93.4 0.04 1.4E-06 51.6 3.0 21 30-51 7-27 (258)
478 3auy_A DNA double-strand break 93.4 0.029 1E-06 55.0 2.1 23 26-49 23-45 (371)
479 2ce7_A Cell division protein F 93.3 0.043 1.5E-06 57.1 3.5 24 27-52 48-71 (476)
480 2r44_A Uncharacterized protein 93.3 0.049 1.7E-06 51.3 3.4 25 28-53 46-70 (331)
481 1m8p_A Sulfate adenylyltransfe 93.2 0.06 2E-06 57.0 4.4 42 11-53 378-420 (573)
482 3iby_A Ferrous iron transport 93.2 0.045 1.5E-06 51.3 3.1 22 30-52 3-24 (256)
483 1u94_A RECA protein, recombina 93.2 0.051 1.7E-06 54.2 3.7 39 27-66 62-100 (356)
484 3i8s_A Ferrous iron transport 93.1 0.043 1.5E-06 51.6 2.8 22 30-52 5-26 (274)
485 2zan_A Vacuolar protein sortin 93.1 0.053 1.8E-06 54.7 3.6 26 27-53 166-191 (444)
486 1g8p_A Magnesium-chelatase 38 93.0 0.04 1.4E-06 51.4 2.5 24 29-53 46-69 (350)
487 3r7w_A Gtpase1, GTP-binding pr 93.0 0.046 1.6E-06 52.2 2.9 22 30-52 5-26 (307)
488 2a5y_B CED-4; apoptosis; HET: 93.0 0.097 3.3E-06 53.7 5.4 37 14-51 137-174 (549)
489 2r6f_A Excinuclease ABC subuni 93.0 0.023 7.8E-07 64.4 0.8 20 26-45 648-667 (972)
490 3io5_A Recombination and repai 93.0 0.046 1.6E-06 55.5 2.9 52 12-65 12-66 (333)
491 1q57_A DNA primase/helicase; d 92.9 0.073 2.5E-06 54.0 4.3 40 26-65 240-279 (503)
492 3hu3_A Transitional endoplasmi 92.9 0.096 3.3E-06 54.3 5.2 26 26-52 236-261 (489)
493 3dm5_A SRP54, signal recogniti 92.9 0.06 2E-06 55.9 3.7 37 27-64 99-135 (443)
494 3pvs_A Replication-associated 92.8 0.069 2.4E-06 54.5 4.0 23 29-53 51-73 (447)
495 1w4r_A Thymidine kinase; type 92.8 0.057 1.9E-06 50.8 3.0 38 26-64 18-55 (195)
496 3cnl_A YLQF, putative uncharac 92.7 0.055 1.9E-06 51.4 2.8 23 30-53 101-123 (262)
497 3pxg_A Negative regulator of g 92.5 0.095 3.2E-06 53.2 4.5 25 28-53 201-225 (468)
498 1u0j_A DNA replication protein 92.2 0.12 4.2E-06 50.5 4.7 41 10-52 86-126 (267)
499 1sky_E F1-ATPase, F1-ATP synth 92.2 0.075 2.5E-06 55.9 3.5 25 27-52 150-174 (473)
500 2hjg_A GTP-binding protein ENG 92.2 0.12 4.2E-06 51.6 4.9 22 30-52 177-198 (436)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.39 E-value=2.1e-13 Score=136.92 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=65.7
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E----------eccccCCCCCCCCCCccc-h
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F----------AESIKDHHPQHNQSFPWS-S 84 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l----------~~~Ig~mvfQ~~nLFPHt-s 84 (530)
++....-..|++++|+||||||||||+ |++.++..|++|+++++ + .+.|+ ++||+++||||+ +
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLL--r~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig-~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLL--RCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG-YLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHH--HHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE-EECTTCCCCTTSCH
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHH--HHHhcCCCCCCcEEEECCEECcccccccchhhCCEE-EEeCCCcCCCCCCH
Confidence 333333458999999999999999999 99999999997777764 2 13455 789999999995 5
Q ss_pred hccCCCCC------hhhHHHHHHHHHHHH
Q 043574 85 WSNCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 85 veNValp~------~~d~r~r~e~aLE~~ 107 (530)
.||++++. .++.+++++++|+.+
T Consensus 98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~ 126 (359)
T 3fvq_A 98 YRNIAYGLGNGKGRTAQERQRIEAMLELT 126 (359)
T ss_dssp HHHHHTTSTTSSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHc
Confidence 59999854 344466777777654
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.36 E-value=1.7e-13 Score=138.73 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=64.5
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E------eccccCCCCCCCCCCcc-chhccC
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F------AESIKDHHPQHNQSFPW-SSWSNC 88 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l------~~~Ig~mvfQ~~nLFPH-tsveNV 88 (530)
++....-..|++++|+||||||||||+ |++.++..+++|+++++ + .+.|+ ++||+++|||| ++.|||
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLL--r~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig-~VfQ~~~l~p~ltV~eni 96 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLL--RMIAGLETITSGDLFIGEKRMNDTPPAERGVG-MVFQSYALYPHLSVAENM 96 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHH--HHHHTSSCCSEEEEEETTEECTTCCGGGSCEE-EECTTCCCCTTSCHHHHH
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHH--HHHHcCCCCCCeEEEECCEECCCCCHHHCCEE-EEecCCcCCCCCCHHHHH
Confidence 333333468999999999999999999 99999999997777765 1 13355 88999999999 555999
Q ss_pred CCCC------hhhHHHHHHHHHHHH
Q 043574 89 EPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 89 alp~------~~d~r~r~e~aLE~~ 107 (530)
+++. .++.+++++++|+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~ 121 (381)
T 3rlf_A 97 SFGLKLAGAKKEVINQRVNQVAEVL 121 (381)
T ss_dssp THHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 9843 344456676666643
No 3
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.31 E-value=5.6e-13 Score=133.96 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=57.3
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E------eccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F------AESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l------~~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++....-..|++++|.||||||||||+ |++.++..+++|+++++ + .+.|+ ++||++.|||| ++.||
T Consensus 27 l~~vsl~i~~Ge~~~llGpnGsGKSTLL--r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~en 103 (372)
T 1v43_A 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTL--RMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS-MVFQSYAVWPHMTVYEN 103 (372)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHH--HHHHTSSCCSEEEEEETTEECTTSCGGGGTEE-EEEC------CCCHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHH--HHHHcCCCCCceEEEECCEECCCCChhhCcEE-EEecCcccCCCCCHHHH
Confidence 3343333458999999999999999999 99999999997777664 1 13455 78899999999 55599
Q ss_pred CCCCC------hhhHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~ 106 (530)
+.++. .++.+++++++|+.
T Consensus 104 i~~~~~~~~~~~~~~~~~v~~~l~~ 128 (372)
T 1v43_A 104 IAFPLKIKKFPKDEIDKRVRWAAEL 128 (372)
T ss_dssp HHTTCC--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99854 23334556655554
No 4
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.30 E-value=6.3e-13 Score=133.01 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=62.4
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E------eccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F------AESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l------~~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++....-..|++++|.||||||||||+ +++.++..+++|+++++ + .+.|+ ++||++.|||| ++.||
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLL--r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~en 95 (359)
T 2yyz_A 19 VDGVSFEVKDGEFVALLGPSGCGKTTTL--LMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG-MVFQNYALYPHMTVFEN 95 (359)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHH--HHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECSSCCCCTTSCHHHH
T ss_pred EeeeEEEEcCCCEEEEEcCCCchHHHHH--HHHHCCCCCCccEEEECCEECCCCChhhCcEE-EEecCcccCCCCCHHHH
Confidence 3343333458999999999999999999 99999999997777664 1 13355 78999999999 55599
Q ss_pred CCCCC------hhhHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~ 106 (530)
+.++. .++.+++++++|+.
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~ 120 (359)
T 2yyz_A 96 IAFPLRARRISKDEVEKRVVEIARK 120 (359)
T ss_dssp HHGGGSSSCSHHHHTTHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 98853 22223455555544
No 5
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.29 E-value=6.9e-13 Score=132.85 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=62.4
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E------eccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F------AESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l------~~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++....-..|++++|.||||||||||+ |++.++..+++|+++++ + .+.|+ ++||++.|||| ++.||
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLL--r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~en 95 (362)
T 2it1_A 19 LNNINLKIKDGEFMALLGPSGSGKSTLL--YTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG-LVFQNWALYPHMTVYKN 95 (362)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHH--HHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECTTCCCCTTSCHHHH
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHH--HHHhcCCCCCceEEEECCEECCcCCHhHCcEE-EEecCcccCCCCCHHHH
Confidence 3343333458999999999999999999 99999999997777664 1 13355 78999999999 55599
Q ss_pred CCCCC------hhhHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~ 106 (530)
+.++. .++.+++++++|+.
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~ 120 (362)
T 2it1_A 96 IAFPLELRKAPREEIDKKVREVAKM 120 (362)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 98742 23334555555544
No 6
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.28 E-value=1e-12 Score=131.63 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=63.2
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee------------ccccCCCCCCCCCCccc
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA------------ESIKDHHPQHNQSFPWS 83 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~------------~~Ig~mvfQ~~nLFPHt 83 (530)
++....-..|++++|.||||||||||+ |++.++..+++|+++++ +. +.|+ ++||++.||||+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLL--r~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig-~v~Q~~~l~~~l 96 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTL--RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIA-MVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHH--HHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEE-EECSCCCCCTTS
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHH--HHHHcCCCCCccEEEECCEECccccccccCCHhHCCEE-EEeCCCccCCCC
Confidence 333333358999999999999999999 99999999997877764 11 2355 789999999995
Q ss_pred -hhccCCCCC------hhhHHHHHHHHHHHH
Q 043574 84 -SWSNCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 84 -sveNValp~------~~d~r~r~e~aLE~~ 107 (530)
+.+|+.++. .++.+++++++|+.+
T Consensus 97 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 127 (372)
T 1g29_1 97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELL 127 (372)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 459998842 233345666666544
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.27 E-value=7.1e-13 Score=132.63 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=62.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E------eccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F------AESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l------~~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++..-.-..|++++|.||||||||||+ +++.++..+++|+++++ + ++.|+ ++||++.|||| ++.||
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLL--r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~en 107 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTIL--RLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG-LVFQNYALFQHMTVYDN 107 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHH--HHHHTSSCCSEEEEEETTEECTTCCGGGSSEE-EECGGGCCCTTSCHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHH--HHHhCCCCCCccEEEECCEECCcCChhhCcEE-EEecCcccCCCCCHHHH
Confidence 4443333458999999999999999999 99999999997777664 1 13455 78999999999 55599
Q ss_pred CCCCC------hhhHHHHHHHHHHH
Q 043574 88 CEPPT------LSNCKAQLETCLES 106 (530)
Q Consensus 88 Valp~------~~d~r~r~e~aLE~ 106 (530)
+.++. .++.+++++++|+.
T Consensus 108 i~~~l~~~~~~~~~~~~~v~~~l~~ 132 (355)
T 1z47_A 108 VSFGLREKRVPKDEMDARVRELLRF 132 (355)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 98842 23334555555554
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.27 E-value=1.2e-12 Score=132.11 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-----------eccccCCCCCCCCCCcc-chhccCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-----------AESIKDHHPQHNQSFPW-SSWSNCE 89 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-----------~~~Ig~mvfQ~~nLFPH-tsveNVa 89 (530)
-..|++++|+||||||||||+ |++.++..|++|+++++ + ++.|+ ++||+++|||+ ++.+|++
T Consensus 51 i~~Gei~~IiGpnGaGKSTLl--r~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig-~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLI--RCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIG-MIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHH--HHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEE-EECSSCCCCTTSCHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHH--HHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEE-EEeCCCccCCCCCHHHHHH
Confidence 358999999999999999999 99999999997777765 1 13456 88999999999 5559998
Q ss_pred CCC------hhhHHHHHHHHHHHH
Q 043574 90 PPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 90 lp~------~~d~r~r~e~aLE~~ 107 (530)
++. .++.+++++++|+.+
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~v 151 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLV 151 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHc
Confidence 842 344466777776653
No 9
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.25 E-value=1.3e-12 Score=130.02 Aligned_cols=87 Identities=24% Similarity=0.318 Sum_probs=63.8
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee-----------ccccCCCCCCCCCCcc-
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA-----------ESIKDHHPQHNQSFPW- 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~-----------~~Ig~mvfQ~~nLFPH- 82 (530)
|++..-.-..|++++|.||||||||||+ +++.++..|++|+++++ +. +.|+ ++||++.||||
T Consensus 21 l~~vsl~i~~Ge~~~llGpnGsGKSTLL--r~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig-~v~Q~~~l~~~l 97 (353)
T 1oxx_K 21 LDNVNINIENGERFGILGPSGAGKTTFM--RIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG-MVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEECTTCEEEEECSCHHHHHHHH--HHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEE-EEETTSCCCTTS
T ss_pred EeceEEEECCCCEEEEECCCCCcHHHHH--HHHhCCCCCCceEEEECCEECcccccccCChhhCCEE-EEeCCCccCCCC
Confidence 3443433468999999999999999999 99999999997777764 11 2345 77899999999
Q ss_pred chhccCCCCC------hhhHHHHHHHHHHHH
Q 043574 83 SSWSNCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 83 tsveNValp~------~~d~r~r~e~aLE~~ 107 (530)
++.||+.++. .++.+++++++|+.+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 128 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKIL 128 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5559998853 233355666665543
No 10
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.20 E-value=1.9e-12 Score=128.92 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=56.0
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E------eccccCCCCCCCCCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F------AESIKDHHPQHNQSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l------~~~Ig~mvfQ~~nLFPH-tsveN 87 (530)
|++....-..|++++|.||||||||||+ |++.++..|++|+++++ + ++.|+ ++||++.|||| ++.||
T Consensus 16 l~~vsl~i~~Ge~~~llGpnGsGKSTLL--r~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 16 LDNLSLKVESGEYFVILGPTGAGKTLFL--ELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA-FVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEECTTCEEEEECCCTHHHHHHH--HHHHTSSCCSEEEEEETTEECTTSCHHHHTCE-EECTTCCCCTTSCHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCccHHHHH--HHHHcCCCCCCcEEEECCEECCCCchhhCcEE-EEecCcccCCCCCHHHH
Confidence 4444444468999999999999999999 99999999997776664 1 13455 78999999999 55599
Q ss_pred CCCC
Q 043574 88 CEPP 91 (530)
Q Consensus 88 Valp 91 (530)
+.++
T Consensus 93 l~~~ 96 (348)
T 3d31_A 93 LEFG 96 (348)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.17 E-value=8.1e-12 Score=116.43 Aligned_cols=70 Identities=26% Similarity=0.344 Sum_probs=55.4
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-----------e-ccccCCCCCCCCCCcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-----------A-ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-----------~-~~Ig~mvfQ~~nLFPH 82 (530)
|++....-..|+.++|+||||||||||+ +++.++..|++|+++++ + + +.|+ ++||++++||+
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl--~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~~ 97 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTML--NIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG-FVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHH--HHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE-EECTTCCCCTT
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHH--HHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEE-EEecCCccCCC
Confidence 3444444468999999999999999999 99999999997777765 1 0 1355 78999999999
Q ss_pred -chhccCCC
Q 043574 83 -SSWSNCEP 90 (530)
Q Consensus 83 -tsveNVal 90 (530)
++.||+.+
T Consensus 98 ~tv~enl~~ 106 (235)
T 3tif_A 98 LTALENVEL 106 (235)
T ss_dssp SCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 66699976
No 12
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.14 E-value=1.4e-11 Score=114.78 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=57.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++..+++|+++++ + ++.++ ++||++.+|+.++.
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~ 93 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIF--SLLERFYQPTAGEITIDGQPIDNISLENWRSQIG-FVSQDSAIMAGTIR 93 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHH--HHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC-EECCSSCCCCEEHH
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE-EEcCCCccccccHH
Confidence 34554444468999999999999999999 99999999998888775 1 12344 67899999998777
Q ss_pred ccCCCC
Q 043574 86 SNCEPP 91 (530)
Q Consensus 86 eNValp 91 (530)
||+.++
T Consensus 94 enl~~~ 99 (243)
T 1mv5_A 94 ENLTYG 99 (243)
T ss_dssp HHTTSC
T ss_pred HHHhhh
Confidence 999986
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.11 E-value=3.1e-11 Score=113.46 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=56.4
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++++ + ++.|+ ++||++.+|+.++.|
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~e 101 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLT--KLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG-VVLQDNVLLNRSIID 101 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHH--HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE-EECSSCCCTTSBHHH
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE-EEeCCCccccccHHH
Confidence 4444444458999999999999999999 99999999997777664 1 12344 778999999877779
Q ss_pred cCCCCC
Q 043574 87 NCEPPT 92 (530)
Q Consensus 87 NValp~ 92 (530)
|+.++.
T Consensus 102 nl~~~~ 107 (247)
T 2ff7_A 102 NISLAN 107 (247)
T ss_dssp HHTTTC
T ss_pred HHhccC
Confidence 999864
No 14
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.11 E-value=3.8e-11 Score=112.85 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E------eccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F------AESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l------~~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
.. ++++|+||||||||||+ +++.++..|++|+++++ + ++.++ ++||++.+||+ ++.||+.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~enl~~~~ 95 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFL--ELIAGIVKPDRGEVRLNGADITPLPPERRGIG-FVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHH--HHHHTSSCCSEEEEEETTEECTTSCTTTSCCB-CCCSSCCCCTTSCHHHHHHTTC
T ss_pred CC-EEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEECCEECCcCchhhCcEE-EEcCCCccCCCCcHHHHHHHHH
Confidence 45 99999999999999999 99999999997776654 1 12345 77899999999 5559998854
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.10 E-value=1.8e-11 Score=113.07 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=54.6
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee------------ccccCCCCCCCCCCcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA------------ESIKDHHPQHNQSFPW 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~------------~~Ig~mvfQ~~nLFPH 82 (530)
|++..-.-..|++++|+||||||||||+ +++.++..|++|+++++ +. +.++ ++||++.+||+
T Consensus 20 l~~vsl~i~~Ge~~~iiG~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~ 96 (224)
T 2pcj_A 20 LKGISLSVKKGEFVSIIGASGSGKSTLL--YILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG-FVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEETTCEEEEEECTTSCHHHHH--HHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE-EECSSCCCCTT
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE-EEecCcccCCC
Confidence 3443333458999999999999999999 99999999997777664 10 2345 77899999999
Q ss_pred -chhccCCCC
Q 043574 83 -SSWSNCEPP 91 (530)
Q Consensus 83 -tsveNValp 91 (530)
++.||+.++
T Consensus 97 ~tv~e~l~~~ 106 (224)
T 2pcj_A 97 LTALENVIVP 106 (224)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHhH
Confidence 555999763
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.09 E-value=2.9e-11 Score=112.76 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=54.8
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee---------ccccCCCCCCCCCCcc-ch
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA---------ESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~---------~~Ig~mvfQ~~nLFPH-ts 84 (530)
|++..-.-..|++++|.||||||||||+ +++.++..|++|+++++ +. +.++ ++||++.+||+ ++
T Consensus 22 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 22 IKGIDLKVPRGQIVTLIGANGAGKTTTL--SAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA-LVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHH--HHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE-EECSSCCCCTTSBH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE-EEecCCccCCCCcH
Confidence 3343333358999999999999999999 99999999997777664 10 1255 77899999999 66
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.||+.++
T Consensus 99 ~enl~~~ 105 (240)
T 1ji0_A 99 YENLMMG 105 (240)
T ss_dssp HHHHHGG
T ss_pred HHHHHHh
Confidence 6999874
No 17
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.08 E-value=1.4e-11 Score=124.44 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=59.6
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++....-..|+.++|+||||||||||+ +++.++.. ++|+++++ +++.|+ ++||++.|||.++.+
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLL--r~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig-~v~Q~~~lf~~tv~e 112 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLL--SAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFG-VIPQKVFIFSGTFRK 112 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHH--HHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEE-EESCCCCCCSEEHHH
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHH--HHHhCCCC-CCeEEEECCEECCcCChHHHhCCEE-EEcCCcccCccCHHH
Confidence 3444444468999999999999999998 99999987 76666654 013345 789999999988889
Q ss_pred cCCCCChhhHHHHHHHHHH
Q 043574 87 NCEPPTLSNCKAQLETCLE 105 (530)
Q Consensus 87 NValp~~~d~r~r~e~aLE 105 (530)
|+.+..... +++++++|+
T Consensus 113 nl~~~~~~~-~~~v~~~l~ 130 (390)
T 3gd7_A 113 NLDPNAAHS-DQEIWKVAD 130 (390)
T ss_dssp HHCTTCCSC-HHHHHHHHH
T ss_pred HhhhccccC-HHHHHHHHH
Confidence 998644222 344555444
No 18
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.08 E-value=1.3e-11 Score=120.94 Aligned_cols=72 Identities=25% Similarity=0.233 Sum_probs=58.3
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++++ +++.|+ ++||++.||+.++.+
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl--~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~-~v~Q~~~lf~~Tv~e 146 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTIL--RLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG-VVPQDTVLFNDTIAD 146 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHH--HHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE-EECSSCCCCSEEHHH
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHH--HHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE-EEecCCccCcccHHH
Confidence 4444444468999999999999999998 99999999997777765 112355 789999999888889
Q ss_pred cCCCCC
Q 043574 87 NCEPPT 92 (530)
Q Consensus 87 NValp~ 92 (530)
||.++.
T Consensus 147 Ni~~~~ 152 (306)
T 3nh6_A 147 NIRYGR 152 (306)
T ss_dssp HHHTTS
T ss_pred HHHhhc
Confidence 999965
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.08 E-value=2.5e-11 Score=115.02 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=54.3
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee---------------------ccccCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA---------------------ESIKDHH 73 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~---------------------~~Ig~mv 73 (530)
|++..-.-..|++++|+||||||||||+ +++.++..|++|+++++ +. +.++ ++
T Consensus 22 l~~vsl~i~~Ge~~~liG~nGsGKSTLl--k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~v 98 (262)
T 1b0u_A 22 LKGVSLQARAGDVISIIGSSGSGKSTFL--RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT-MV 98 (262)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHH--HHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE-EE
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceE-EE
Confidence 3443333458999999999999999999 99999999997777663 11 1244 77
Q ss_pred CCCCCCCcc-chhccCCC
Q 043574 74 PQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 74 fQ~~nLFPH-tsveNVal 90 (530)
||++++||+ ++.+|+.+
T Consensus 99 ~Q~~~l~~~ltv~e~l~~ 116 (262)
T 1b0u_A 99 FQHFNLWSHMTVLENVME 116 (262)
T ss_dssp CSSCCCCTTSCHHHHHHH
T ss_pred ecCcccCCCCcHHHHHHh
Confidence 899999999 55599976
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.08 E-value=4e-11 Score=112.88 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=54.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E---------eccccCCCCCCCCCCcc-ch
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F---------AESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l---------~~~Ig~mvfQ~~nLFPH-ts 84 (530)
|++..-.-..|++++|+||||||||||+ +++.++..|++|+++++ + ++.|+ ++||++.+||+ ++
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl--k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv 99 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLI--NVITGFLKADEGRVYFENKDITNKEPAELYHYGIV-RTFQTPQPLKEMTV 99 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHH--HHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE-ECCCCCGGGGGSBH
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE-EEccCCccCCCCcH
Confidence 3443333458999999999999999999 99999999997777664 1 01245 77899999999 55
Q ss_pred hccCCCC
Q 043574 85 WSNCEPP 91 (530)
Q Consensus 85 veNValp 91 (530)
.||+.++
T Consensus 100 ~enl~~~ 106 (257)
T 1g6h_A 100 LENLLIG 106 (257)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 5999774
No 21
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.06 E-value=4.5e-11 Score=113.92 Aligned_cols=80 Identities=21% Similarity=0.127 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
-..|+.++|+||||||||||+ +++.++..+++|+++++ + .+.++ ++||++++++. ++.||+.++.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl--~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLL--RLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA-VMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHH--HHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE-EECSCCCCCSCCBHHHHHHGGG
T ss_pred EcCCCEEEEECCCCCcHHHHH--HHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE-EEecCCccCCCCCHHHHHHhhh
Confidence 358999999999999999999 99999999998877765 1 01233 66899999887 5559998743
Q ss_pred ----hhhHHHHHHHHHHHH
Q 043574 93 ----LSNCKAQLETCLESM 107 (530)
Q Consensus 93 ----~~d~r~r~e~aLE~~ 107 (530)
..+.+++++++|+.+
T Consensus 111 ~~~~~~~~~~~~~~~l~~~ 129 (266)
T 4g1u_C 111 APYGGSQDRQALQQVMAQT 129 (266)
T ss_dssp TTSCSTTHHHHHHHHHHHT
T ss_pred hhcCcHHHHHHHHHHHHHc
Confidence 233356666666543
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.06 E-value=9.1e-11 Score=110.87 Aligned_cols=69 Identities=22% Similarity=0.105 Sum_probs=55.7
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEPP 91 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNValp 91 (530)
|++..-.-..|++++|.||||||||||+ +++.++..|++|+++ +.+.++ ++||++.+||+ ++.||+.++
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl--~~l~Gl~~p~~G~I~--~~~~i~-~v~q~~~~~~~~tv~enl~~~ 90 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLL--DLLLGIHRPIQGKIE--VYQSIG-FVPQFFSSPFAYSVLDIVLMG 90 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHH--HHHTTSSCCSEEEEE--ECSCEE-EECSCCCCSSCCBHHHHHHGG
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEE--EeccEE-EEcCCCccCCCCCHHHHHHHh
Confidence 3443333458999999999999999999 999999999966665 556777 88999999998 555999874
No 23
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.06 E-value=4.9e-11 Score=113.30 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=54.0
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-------eccccCCCCCCCCCCcc-chhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-------AESIKDHHPQHNQSFPW-SSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-------~~~Ig~mvfQ~~nLFPH-tsve 86 (530)
|++..-.-..|++++|.||||||||||+ +++.++..|++|+++++ + ++.|+ ++||++.+||+ ++.|
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLl--k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~e 107 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTL--RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS-YLPEEAGAYRNMQGIE 107 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHH--HHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE-EECTTCCCCTTSBHHH
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEECCEECCccHHHHhhcEE-EEcCCCCCCCCCcHHH
Confidence 3343333458999999999999999999 99999999996766654 1 12345 67899999999 5559
Q ss_pred cCCC
Q 043574 87 NCEP 90 (530)
Q Consensus 87 NVal 90 (530)
|+.+
T Consensus 108 nl~~ 111 (256)
T 1vpl_A 108 YLRF 111 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9976
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.05 E-value=4.2e-11 Score=114.35 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E----------eccccCCCCCCCCCCcc-chhccCCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F----------AESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l----------~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
-..|++++|+||||||||||+ +++.++..|++|+++++ + ++.|+ ++||++.+||+ ++.||+.+
T Consensus 47 i~~Gei~~liG~NGsGKSTLl--k~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~-~v~Q~~~l~~~~tv~e~l~~ 123 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFL--RCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG-MVFQRFNLFPHMTVLNNITL 123 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHH--HHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE-EECSSCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHH--HHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE-EEeCCCcCCCCCCHHHHHHH
Confidence 358899999999999999999 99999999997766654 1 01244 77899999999 55599976
No 25
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.03 E-value=5.2e-11 Score=114.56 Aligned_cols=87 Identities=23% Similarity=0.238 Sum_probs=61.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E----------eccccCCCCCCC--CCCcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F----------AESIKDHHPQHN--QSFPW 82 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l----------~~~Ig~mvfQ~~--nLFPH 82 (530)
|++..-.-..|++++|+||||||||||+ +++.++..+++|+++++ + ++.|+ ++||++ .+|+.
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl--~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig-~v~Q~~~~~~~~~ 100 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLF--QNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG-IVFQDPDNQLFSA 100 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHH--HHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE-EECSSGGGTCCSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHH--HHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE-EEEcCcccccccC
Confidence 4443333458999999999999999999 99999999997777664 1 12345 778976 46654
Q ss_pred chhccCCCCC------hhhHHHHHHHHHHHH
Q 043574 83 SSWSNCEPPT------LSNCKAQLETCLESM 107 (530)
Q Consensus 83 tsveNValp~------~~d~r~r~e~aLE~~ 107 (530)
++.+|+.++. .++.+++++++|+.+
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRT 131 (275)
T ss_dssp BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 7779998732 344466777776643
No 26
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.00 E-value=3e-10 Score=105.25 Aligned_cols=70 Identities=19% Similarity=0.107 Sum_probs=56.0
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
|++..-.-..|+.++|+||||||||||+ +++.++..|++|+++ ++..|+ ++||++.+||.++.||+.++.
T Consensus 24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~--~~g~i~-~v~q~~~~~~~tv~enl~~~~ 93 (229)
T 2pze_A 24 LKDINFKIERGQLLAVAGSTGAGKTSLL--MMIMGELEPSEGKIK--HSGRIS-FCSQFSWIMPGTIKENIIFGV 93 (229)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHH--HHHTTSSCCSEEEEE--ECSCEE-EECSSCCCCSBCHHHHHHTTS
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCcCCccEEE--ECCEEE-EEecCCcccCCCHHHHhhccC
Confidence 4443333458999999999999999999 999999999955554 554566 789999999987779998864
No 27
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.99 E-value=1.6e-10 Score=119.86 Aligned_cols=156 Identities=18% Similarity=0.186 Sum_probs=95.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ + ++.++ ++||++.+|+.++.
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll--~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 434 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIA--NLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA-LVSQNVHLFNDTIA 434 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE-EEcCCCccccccHH
Confidence 55665555568999999999999999999 99999999998888876 1 12345 77899999998777
Q ss_pred ccCCCCC-hhhHHHHHHHHHHHHHHHhHHhcccchhHHHHHhhhhccchHHHHHHHhcccccccccccCCcchhhHHHHH
Q 043574 86 SNCEPPT-LSNCKAQLETCLESMAERGIKLGTISSQQIFTTLNKWHGLNTALRRILSKSNKKVKNAVSDKVSGSILWERA 164 (530)
Q Consensus 86 eNValp~-~~d~r~r~e~aLE~~a~~~v~~g~~~s~~i~~~l~~~h~l~tal~r~~~~~~~~~~~~~~~~~~~~~lw~ra 164 (530)
||+.++. .+.-+++++++++.. | -.+..+.+ -+|++|-+.+ +. ...|++---...-.||
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~-------~---l~~~~~~~--p~g~~t~~~~----~~----~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 435 NNIAYAAEGEYTREQIEQAARQA-------H---AMEFIENM--PQGLDTVIGE----NG----TSLSGGQRQRVAIARA 494 (582)
T ss_pred HHHhccCCCCCCHHHHHHHHHHC-------C---CHHHHHhC--cccccchhcC----CC----CcCCHHHHHHHHHHHH
Confidence 9999864 211134555555432 1 12222222 2466664421 11 1223332222333344
Q ss_pred HHHhhcccccccchhhhhcccCCCccChhHHHHHHHHHHH
Q 043574 165 VYALSARVNAKEIDGVLELRENGKRLSLEEETYLREGLVG 204 (530)
Q Consensus 165 v~a~s~~~~~~e~~~~~~~~ek~~~~s~ee~~y~~e~~~~ 204 (530)
++. +. .++=+.|-+.+|..+....+.+.+..
T Consensus 495 l~~-----~p----~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 495 LLR-----DA----PVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHc-----CC----CEEEEECccccCCHHHHHHHHHHHHH
Confidence 332 11 25556777777777766666665543
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.99 E-value=9.8e-11 Score=108.79 Aligned_cols=71 Identities=20% Similarity=0.111 Sum_probs=54.2
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE------eccccCCCCCCCCCCcc-chhccCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF------AESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl------~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
|++..-.-..|++++|+||||||||||+ +++.++..|++|+++++= ++.++ ++||++.+||. ++.||+.+
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLl--k~l~Gl~~p~~G~I~~~g~~~~~~~~~i~-~v~q~~~~~~~~tv~enl~~ 101 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLL--KTISTYLKPLKGEIIYNGVPITKVKGKIF-FLPEEIIVPRKISVEDYLKA 101 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHH--HHHTTSSCCSEEEEEETTEEGGGGGGGEE-EECSSCCCCTTSBHHHHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCeEEEECCEEhhhhcCcEE-EEeCCCcCCCCCCHHHHHHH
Confidence 4443333458999999999999999999 999999999966665531 12355 78999999999 66699966
Q ss_pred C
Q 043574 91 P 91 (530)
Q Consensus 91 p 91 (530)
+
T Consensus 102 ~ 102 (214)
T 1sgw_A 102 V 102 (214)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.97 E-value=9.3e-11 Score=111.00 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=54.5
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++....-..|+.++|+||||||||||+ +++.++..+ +|+++++ + ++.|+ ++||++.+|+.++.
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 110 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIA--KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIG-IVPQDTILFNETIK 110 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHH--HHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEE-EECSSCCCCSEEHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHH--HHHhccCCC-CeEEEECCEEhhhcCHHHHhccEE-EEcCCCcccccCHH
Confidence 34554444568999999999999999998 999998764 6666654 1 12244 67899999987777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
+|+.++.
T Consensus 111 enl~~~~ 117 (260)
T 2ghi_A 111 YNILYGK 117 (260)
T ss_dssp HHHHTTC
T ss_pred HHHhccC
Confidence 9998854
No 30
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.94 E-value=8.6e-11 Score=121.90 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=57.8
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-E----------eccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-F----------AESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l----------~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ . ++.++ ++||++.+|+.++.|
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll--~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~l~~~tv~e 433 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLI--NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG-LVQQDNILFSDTVKE 433 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHH--TTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE-EECSSCCCCSSBHHH
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHH--HHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE-EEeCCCccCcccHHH
Confidence 4444444468999999999999999998 99999999997777765 1 12355 778999999998889
Q ss_pred cCCCCC
Q 043574 87 NCEPPT 92 (530)
Q Consensus 87 NValp~ 92 (530)
|+.++.
T Consensus 434 ni~~~~ 439 (578)
T 4a82_A 434 NILLGR 439 (578)
T ss_dssp HHGGGC
T ss_pred HHhcCC
Confidence 999855
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.94 E-value=2.7e-10 Score=107.82 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=60.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCCCCcc-ch
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQSFPW-SS 84 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPH-ts 84 (530)
+|++..-.-..|+.++|.||||||||||+ +++.++..++ |+++++ + ++.++ ++||++.+||+ ++
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLl--k~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLL--ARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA-YLSQQQTPPFATPV 90 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHH--HHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE-EECSCCCCCTTCBH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE-EECCCCccCCCCcH
Confidence 34554444468999999999999999999 9999998888 777764 1 11244 77899999998 66
Q ss_pred hccCCCCCh--hhHHHHHHHHHHH
Q 043574 85 WSNCEPPTL--SNCKAQLETCLES 106 (530)
Q Consensus 85 veNValp~~--~d~r~r~e~aLE~ 106 (530)
.||+.++.. .+ +++++++|+.
T Consensus 91 ~e~l~~~~~~~~~-~~~~~~~l~~ 113 (249)
T 2qi9_C 91 WHYLTLHQHDKTR-TELLNDVAGA 113 (249)
T ss_dssp HHHHHTTCSSTTC-HHHHHHHHHH
T ss_pred HHHHHHhhccCCc-HHHHHHHHHH
Confidence 699988541 12 3445555543
No 32
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.93 E-value=1.3e-10 Score=120.67 Aligned_cols=85 Identities=20% Similarity=0.165 Sum_probs=62.2
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-E----------eccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-F----------AESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l----------~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ . ++.++ ++||++.+|+.++.|
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl--~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVL--SLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG-TVSQEPILFSCSIAE 436 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHH--HHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE-EECSSCCCCSSBHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHH--HHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE-EEccCCcccCCCHHH
Confidence 4444444458999999999999999999 99999999997777765 1 12344 778999999987779
Q ss_pred cCCCCChh---hHHHHHHHHHH
Q 043574 87 NCEPPTLS---NCKAQLETCLE 105 (530)
Q Consensus 87 NValp~~~---d~r~r~e~aLE 105 (530)
|+.++... .-+++++++++
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~ 458 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAE 458 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHH
T ss_pred HHhhcCCCccccCHHHHHHHHH
Confidence 99985421 11445555544
No 33
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.93 E-value=3e-10 Score=106.54 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=50.3
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc--CCCCCceEEEE---Ee---------ccccCCCCCCCCCCccc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL--NKEPHLTGYVD---FA---------ESIKDHHPQHNQSFPWS 83 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l--~~~~~Gtg~Id---l~---------~~Ig~mvfQ~~nLFPHt 83 (530)
|++..-.-..|++++|+||||||||||+ +++.++ ..|++|+++++ +. ..++ ++||++.+||++
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl--k~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~ 95 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLG--KILAGDPEYTVERGEILLDGENILELSPDERARKGLF-LAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHH--HHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC-CCCCCCC-CCSC
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE-EeccCCccccCC
Confidence 3443333458999999999999999998 999998 56776666654 10 1133 678999999994
Q ss_pred h-hccCCC
Q 043574 84 S-WSNCEP 90 (530)
Q Consensus 84 s-veNVal 90 (530)
+ .+|+.+
T Consensus 96 tv~e~l~~ 103 (250)
T 2d2e_A 96 TIANFLRL 103 (250)
T ss_dssp BHHHHHHH
T ss_pred CHHHHHHH
Confidence 4 488865
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.93 E-value=2.3e-10 Score=109.14 Aligned_cols=72 Identities=21% Similarity=0.162 Sum_probs=56.1
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E--------eccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F--------AESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l--------~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++..-.-..|++++|+||||||||||+ +++.++..|++|+++++ + ++.|+ ++||++.+|+.++.|
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--k~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~-~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVA--ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA-AVGQEPLLFGRSFRE 111 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHH--HHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE-EECSSCCCCSSBHHH
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE-EEecCCccccccHHH
Confidence 4443343458999999999999999999 99999999997777664 1 12345 778999999987779
Q ss_pred cCCCCC
Q 043574 87 NCEPPT 92 (530)
Q Consensus 87 NValp~ 92 (530)
|+.++.
T Consensus 112 nl~~~~ 117 (271)
T 2ixe_A 112 NIAYGL 117 (271)
T ss_dssp HHHTTC
T ss_pred HHhhhc
Confidence 998854
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.93 E-value=1.5e-10 Score=120.04 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=57.3
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-E----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-F----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ . ++.++ ++||++.+|+.++.
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl--~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 434 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIA--SLITRFYDIDEGHILMDGHDLREYTLASLRNQVA-LVSQNVHLFNDTVA 434 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHH--HHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE-EECSSCCCCSSBHH
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHH--HHHhhccCCCCCeEEECCEEccccCHHHHHhhCe-EEccCCcCCCCCHH
Confidence 34444444468999999999999999999 99999999997777765 1 12344 77899999998777
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
||+.++.
T Consensus 435 eni~~~~ 441 (582)
T 3b60_A 435 NNIAYAR 441 (582)
T ss_dssp HHHHTTT
T ss_pred HHHhccC
Confidence 9999854
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.93 E-value=2.6e-10 Score=108.12 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=60.5
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-----eccccCCCCCCC-CCCcc-chhcc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-----AESIKDHHPQHN-QSFPW-SSWSN 87 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-----~~~Ig~mvfQ~~-nLFPH-tsveN 87 (530)
|++..-.-..|++++|+||||||||||+ +++.++..|++|+++++ + ++.++ ++||++ .+|++ ++.+|
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl--~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 23 LENVSLVINEGECLLVAGNTGSGKSTLL--QIVAGLIEPTSGDVLYDGERKKGYEIRRNIG-IAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHH--HHHTTSSCCSEEEEEETTEECCHHHHGGGEE-EECSSGGGGCCCSSHHHH
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHH--HHHhCCCCCCCcEEEECCEECchHHhhhhEE-EEeccchhhcCCCcHHHH
Confidence 4444444468999999999999999999 99999999997777664 1 13355 788985 56666 55599
Q ss_pred CCCCC-----hhhHHHHHHHHHHH
Q 043574 88 CEPPT-----LSNCKAQLETCLES 106 (530)
Q Consensus 88 Valp~-----~~d~r~r~e~aLE~ 106 (530)
+.++. .++.+++++++|+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~ 123 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEF 123 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 97742 12234556666554
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.90 E-value=2.2e-10 Score=119.45 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=57.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ +++.++ ++||++.+|+.++.|
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll--~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~e 435 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLM--NLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS-AVPQETVLFSGTIKE 435 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHH--HTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE-EECSSCCCCSEEHHH
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCccCCCcEEEECCEEcccCCHHHHHhheE-EECCCCcCcCccHHH
Confidence 4444444458999999999999999998 99999999997777765 123345 778999999988889
Q ss_pred cCCCCC
Q 043574 87 NCEPPT 92 (530)
Q Consensus 87 NValp~ 92 (530)
|+.++.
T Consensus 436 ni~~~~ 441 (587)
T 3qf4_A 436 NLKWGR 441 (587)
T ss_dssp HHTTTC
T ss_pred HHhccC
Confidence 999865
No 38
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.89 E-value=1.5e-10 Score=120.70 Aligned_cols=73 Identities=27% Similarity=0.256 Sum_probs=58.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|++.++ +++.++ ++||++.+|+.++.
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll--~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~ 446 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIV--NLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG-IVLQDTILFSTTVK 446 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHH--HHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE-EECTTCCCCSSBHH
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHH--HHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE-EEeCCCccccccHH
Confidence 44554444568999999999999999998 99999999997777765 112345 77899999998888
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
||+.++.
T Consensus 447 eni~~~~ 453 (598)
T 3qf4_B 447 ENLKYGN 453 (598)
T ss_dssp HHHHSSS
T ss_pred HHHhcCC
Confidence 9999854
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.86 E-value=9.8e-10 Score=102.56 Aligned_cols=70 Identities=20% Similarity=0.058 Sum_probs=53.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~ 92 (530)
|++..-.-..|+.++|+||||||||||+ +++.++..|++|+ |.++..++ ++||++.+|.-++.||+.++.
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~--I~~~g~i~-~v~Q~~~~~~~tv~enl~~~~ 90 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLL--SALLAEMDKVEGH--VAIKGSVA-YVPQQAWIQNDSLRENILFGC 90 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHH--HHHTTCSEEEEEE--EEECSCEE-EECSSCCCCSEEHHHHHHTTS
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHH--HHHhcCCCCCCce--EEECCEEE-EEcCCCcCCCcCHHHHhhCcc
Confidence 4444444468999999999999999999 9999999888555 44554566 789998765447779998854
No 40
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.82 E-value=8.6e-10 Score=125.11 Aligned_cols=72 Identities=24% Similarity=0.221 Sum_probs=60.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
||++..-.-..|+.++|+||||||||||+ +++.++-+|++|++.|| +++.|+ .+||++.||+-|..
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~--~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~-~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVV--ALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA-IVSQEPTLFDCSIA 1170 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHH--HHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEE-EECSSCCCCSEEHH
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHH--HHHhcCccCCCCEEEECCEEhhhCCHHHHHhheE-EECCCCEeeCccHH
Confidence 45555555568999999999999999998 99999999999999987 234445 78999999999999
Q ss_pred ccCCCC
Q 043574 86 SNCEPP 91 (530)
Q Consensus 86 eNValp 91 (530)
+||.++
T Consensus 1171 eNI~~g 1176 (1321)
T 4f4c_A 1171 ENIIYG 1176 (1321)
T ss_dssp HHHSSS
T ss_pred HHHhcc
Confidence 999875
No 41
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.82 E-value=9.9e-10 Score=105.52 Aligned_cols=64 Identities=19% Similarity=0.093 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E----------eccccCCCCCCCCC-C-cc-chhccC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F----------AESIKDHHPQHNQS-F-PW-SSWSNC 88 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l----------~~~Ig~mvfQ~~nL-F-PH-tsveNV 88 (530)
-..|+.++|+||||||||||+ +++.++..|++|+++++ + ++.|+ ++||++.+ | ++ ++.||+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLl--k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~~ltv~enl 120 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLL--NILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG-FVSHSLLEKFQEGERVIDVV 120 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHH--HHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE-EECHHHHTTSCTTSBHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH--HHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE-EEEcCcccccCCCCCHHHHH
Confidence 358999999999999999999 99999999996666653 1 01244 66888664 3 34 666999
Q ss_pred CCC
Q 043574 89 EPP 91 (530)
Q Consensus 89 alp 91 (530)
.++
T Consensus 121 ~~~ 123 (279)
T 2ihy_A 121 ISG 123 (279)
T ss_dssp HTT
T ss_pred Hhh
Confidence 874
No 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.80 E-value=7.5e-10 Score=105.20 Aligned_cols=68 Identities=21% Similarity=0.038 Sum_probs=49.1
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCCceEEEEEecc-------------ccCCCCCCCCCCccc
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPHLTGYVDFAES-------------IKDHHPQHNQSFPWS 83 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~Gtg~Idl~~~-------------Ig~mvfQ~~nLFPHt 83 (530)
++..-.-..|++++|+||||||||||+ +++.++. .+++|+++++= ++ ++ ++||++.+||.+
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLl--k~l~Gl~~~~p~~G~I~~~g-~~i~~~~~~~~~~~~i~-~v~Q~~~l~~~~ 112 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLS--ATLAGREDYEVTGGTVEFKG-KDLLALSPEDRAGEGIF-MAFQYPVEIPGV 112 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHH--HHHHTCTTCEEEEEEEEETT-EEGGGSCHHHHHHHTEE-EECSSCCCCTTC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCCeEEEECC-EECCcCCHHHHhhCCEE-EEccCccccccc
Confidence 333333458999999999999999998 9999984 56666666540 11 33 678999999995
Q ss_pred h-hccCCC
Q 043574 84 S-WSNCEP 90 (530)
Q Consensus 84 s-veNVal 90 (530)
+ .+|+.+
T Consensus 113 tv~e~~~~ 120 (267)
T 2zu0_C 113 SNQFFLQT 120 (267)
T ss_dssp BHHHHHHH
T ss_pred cHHHHHHH
Confidence 4 487743
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.75 E-value=3.1e-09 Score=102.98 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCE 89 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNVa 89 (530)
..|+.++|+||||||||||+ +++.++..|++|+ |.++..++ ++||++.+||.++.||+.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl--k~l~Gl~~p~~G~--I~~~g~i~-~v~Q~~~l~~~tv~enl~ 120 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL--MMIMGELEPSEGK--IKHSGRIS-FCSQNSWIMPGTIKENII 120 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH--HHHTTSSCEEEEE--EECCSCEE-EECSSCCCCSSBHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH--HHHhcCCCCCCcE--EEECCEEE-EEeCCCccCcccHHHHhh
Confidence 48899999999999999999 9999999888554 44554566 889999999987779997
No 44
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.73 E-value=5.1e-09 Score=100.29 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEE---E----------Ee-ccccCCCCCC----------------
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYV---D----------FA-ESIKDHHPQH---------------- 76 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~I---d----------l~-~~Ig~mvfQ~---------------- 76 (530)
.++.++|+||||||||||+ +++.++..++.|++.+ + +. +.++ +++|.
T Consensus 168 ~geiv~l~G~sG~GKSTll--~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g-~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLL--NAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG-YVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp SSSEEEEECSTTSSHHHHH--HHHSTTCCCC-------------CCCSCCEEECTTSC-EEESSCSSTTCCCCSSCHHHH
T ss_pred cCCeEEEECCCCCcHHHHH--HHhcccccccccceecccCCCCCceeeeEEEEcCCCC-EEEECcCCCccCCCcCCHHHH
Confidence 4679999999999999998 8888988888777766 1 11 1233 44454
Q ss_pred CCCCccchhccCCCCC---hhhHHHHHHHHHHHH
Q 043574 77 NQSFPWSSWSNCEPPT---LSNCKAQLETCLESM 107 (530)
Q Consensus 77 ~nLFPHtsveNValp~---~~d~r~r~e~aLE~~ 107 (530)
++|||+.+++||.++. ..+.+.+++++|+.+
T Consensus 245 ~~l~~~~~~~n~~~~~~~~~~e~~~~v~~~l~~~ 278 (301)
T 1u0l_A 245 KHYFKEFGDKQCFFSDCNHVDEPECGVKEAVENG 278 (301)
T ss_dssp GGGSTTSSSCCCSSTTCCSSSCSSCHHHHHHHHT
T ss_pred HHHHHhcccccCcCCCCcCCCCCCcHHHHHHHcC
Confidence 3589994449999954 233355666666643
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.70 E-value=2.1e-09 Score=121.90 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=64.5
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchhc
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSWS 86 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsve 86 (530)
|++..-.-..|+.++|+||||||||||+ +++.++-++.+|++.|+ +++.|+ .++|++.||.-|+.|
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll--~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~-~v~Q~~~Lf~~TI~e 510 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTII--SLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA-VVSQEPALFNCTIEE 510 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHH--HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE-EECSSCCCCSEEHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHH--HHhccccccccCcccCCCccchhccHHHHhhccc-ccCCcceeeCCchhH
Confidence 4555555568999999999999999998 99999999997877776 123455 788999999999999
Q ss_pred cCCCCCh-hhHHHHHHHHHH
Q 043574 87 NCEPPTL-SNCKAQLETCLE 105 (530)
Q Consensus 87 NValp~~-~d~r~r~e~aLE 105 (530)
||.++.. .+ ++++.++++
T Consensus 511 NI~~g~~~~~-~~~v~~a~~ 529 (1321)
T 4f4c_A 511 NISLGKEGIT-REEMVAACK 529 (1321)
T ss_dssp HHHTTCTTCC-HHHHHHHHH
T ss_pred HHhhhcccch-HHHHHHHHH
Confidence 9999652 12 344554443
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.68 E-value=1.8e-09 Score=122.24 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=58.7
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-E----------eccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-F----------AESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l----------~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|++.++ . ++.|+ ++||++.||+.++.
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~--~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~ti~ 481 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTV--QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG-VVSQEPVLFATTIA 481 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHH--HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE-EECSSCCCCSSCHH
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheE-EEcCCCccCCccHH
Confidence 34554444568999999999999999998 99999999997777765 1 12355 78999999999888
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
|||.++.
T Consensus 482 eNi~~g~ 488 (1284)
T 3g5u_A 482 ENIRYGR 488 (1284)
T ss_dssp HHHHHHC
T ss_pred HHHhcCC
Confidence 9999844
No 47
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.64 E-value=9.7e-09 Score=97.91 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=35.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---Ee-----ccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---FA-----ESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l~-----~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
.++|+||||||||||+ +++.++..+++|++.++ +. +.++ +++|+++++|+ ++++|+.++.
T Consensus 4 ~v~lvG~nGaGKSTLl--n~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~-~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV--NTLFKSQVSRKASSWNREEKIPKTVEIKAIG-HVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEESSSSSHHHHH--HHHHHHHC------------CCCCCSCCEEE-ESCC----CCEEEEECCCC--C
T ss_pred EEEEECCCCCCHHHHH--HHHhCCCCCCCCccccCCcccCcceeeeeeE-EEeecCCCcCCceEEechhhhh
Confidence 3789999999999998 88888888887776654 11 2334 67899999999 5559999965
No 48
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.64 E-value=1.1e-08 Score=97.75 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=47.8
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc--------C-CCCCCCCCCccchhccC
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK--------D-HHPQHNQSFPWSSWSNC 88 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig--------~-mvfQ~~nLFPHtsveNV 88 (530)
|++..-.-. |+.++|.||||||||||+ +++.++. |++|+++++= +++. . ++||++.+ ..++.||+
T Consensus 21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLl--k~l~Gl~-p~~G~I~~~g-~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl 94 (263)
T 2pjz_A 21 LENINLEVN-GEKVIILGPNGSGKTTLL--RAISGLL-PYSGNIFING-MEVRKIRNYIRYSTNLPEAYEI-GVTVNDIV 94 (263)
T ss_dssp EEEEEEEEC-SSEEEEECCTTSSHHHHH--HHHTTSS-CCEEEEEETT-EEGGGCSCCTTEEECCGGGSCT-TSBHHHHH
T ss_pred EEeeeEEEC-CEEEEEECCCCCCHHHHH--HHHhCCC-CCCcEEEECC-EECcchHHhhheEEEeCCCCcc-CCcHHHHH
Confidence 444333335 999999999999999999 9999999 9866655431 2221 2 67888877 33666888
Q ss_pred CC
Q 043574 89 EP 90 (530)
Q Consensus 89 al 90 (530)
.+
T Consensus 95 ~~ 96 (263)
T 2pjz_A 95 YL 96 (263)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.59 E-value=1.2e-08 Score=115.69 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=58.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-----------EeccccCCCCCCCCCCccchh
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-----------FAESIKDHHPQHNQSFPWSSW 85 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-----------l~~~Ig~mvfQ~~nLFPHtsv 85 (530)
+|++..-.-..|+.++|+||||||||||+ +++.++.+|++|+++++ +++.++ ++||++.+|+.++.
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~--~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVV--QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG-IVSQEPILFDCSIA 1124 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHH--HHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCE-EEESSCCCCSSBHH
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHH--HHHhcCcCCCCCEEEECCEEcccCCHHHHHhceE-EECCCCccccccHH
Confidence 44555544568999999999999999999 99999999997777665 123344 67899999988888
Q ss_pred ccCCCCC
Q 043574 86 SNCEPPT 92 (530)
Q Consensus 86 eNValp~ 92 (530)
||+.++.
T Consensus 1125 eNi~~~~ 1131 (1284)
T 3g5u_A 1125 ENIAYGD 1131 (1284)
T ss_dssp HHHTCCC
T ss_pred HHHhccC
Confidence 9999854
No 50
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.58 E-value=8e-09 Score=92.25 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-------eccccCCCCCCCCCCccchh-ccC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-------AESIKDHHPQHNQSFPWSSW-SNC 88 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-------~~~Ig~mvfQ~~nLFPHtsv-eNV 88 (530)
++|+ +.-..|++++|+||||||||||+ +++.++...-...+.+.- .+.++ ++||+..+||++++ +|+
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl--~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVV--RCLRERIPNLHFSVSATTRAPRPGEVDGVD-YHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHH--HHHHHHSTTCEECCCEESSCCCTTCCBTTT-BEECCHHHHHHHHHTTCE
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHH--HHHHhhCCceEEcccccccCCcccccCCCe-eEecCHHHHHHHHhcCCc
Confidence 5666 45578999999999999999997 777776532111111110 12334 77899889998555 665
Q ss_pred C
Q 043574 89 E 89 (530)
Q Consensus 89 a 89 (530)
.
T Consensus 86 ~ 86 (207)
T 1znw_A 86 L 86 (207)
T ss_dssp E
T ss_pred e
Confidence 3
No 51
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.52 E-value=1.7e-08 Score=89.63 Aligned_cols=70 Identities=17% Similarity=0.003 Sum_probs=48.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE---E-e-ccccCCCCCCCCCCccc-hhccCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD---F-A-ESIKDHHPQHNQSFPWS-SWSNCEP 90 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id---l-~-~~Ig~mvfQ~~nLFPHt-sveNVal 90 (530)
++++....-..|++++|+||+|||||||+ +++.++. +.+|++.++ + . .+...++|||+.+| ++ +.+|+.+
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLl--r~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLT--RGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHH--HHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTHHHH
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHH--HHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHHHHHH
Confidence 34443333478899999999999999998 8888877 776766543 1 1 11123568999999 74 4488843
No 52
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.50 E-value=3.6e-08 Score=96.07 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCCCCC------hhhHHH
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCEPPT------LSNCKA 98 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNValp~------~~d~r~ 98 (530)
...|++++|+||||||||||+ +++.++..+..|. ..++ +++|+..+||+++.+|+.+.. ..+ .+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~--~~L~gll~~~~G~------~~v~-~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d-~~ 156 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA--RVLQALLARWDHH------PRVD-LVTTDGFLYPNAELQRRNLMHRKGFPESYN-RR 156 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH--HHHHHHHHTSTTC------CCEE-EEEGGGGBCCHHHHHHTTCTTCTTSGGGBC-HH
T ss_pred CCCCEEEEEECCCCchHHHHH--HHHHhhccccCCC------CeEE-EEecCccCCcccHHHHHHHHHhcCCChHHH-HH
Confidence 467889999999999999997 7777776555443 2344 567998999996679987621 222 45
Q ss_pred HHHHHHHHHH
Q 043574 99 QLETCLESMA 108 (530)
Q Consensus 99 r~e~aLE~~a 108 (530)
++.+.|+.+.
T Consensus 157 ~~~~~L~~l~ 166 (312)
T 3aez_A 157 ALMRFVTSVK 166 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6666666654
No 53
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.45 E-value=4.1e-08 Score=86.09 Aligned_cols=75 Identities=17% Similarity=0.115 Sum_probs=49.1
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-------CCceEEEEEec-----cccCCCCCCCCC
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-------PHLTGYVDFAE-----SIKDHHPQHNQS 79 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-------~~Gtg~Idl~~-----~Ig~mvfQ~~nL 79 (530)
|-|+.+|.. --..|++++|+||||||||||+ +++.+...+ ..+.+|++-.. .+. ..+|+..+
T Consensus 12 ~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll--~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~-~~~~~~~~ 85 (231)
T 4a74_A 12 KSLDKLLGG---GIETQAITEVFGEFGSGKTQLA--HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR-EIAQNRGL 85 (231)
T ss_dssp HHHHHHTTS---SEESSEEEEEEESTTSSHHHHH--HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTS
T ss_pred hhHHhHhcC---CCCCCcEEEEECCCCCCHHHHH--HHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 445555532 2346899999999999999997 666553222 33355655321 222 34588999
Q ss_pred CccchhccCCCCC
Q 043574 80 FPWSSWSNCEPPT 92 (530)
Q Consensus 80 FPHtsveNValp~ 92 (530)
+|.++.+|+.+..
T Consensus 86 ~~~~~~~~~~~~~ 98 (231)
T 4a74_A 86 DPDEVLKHIYVAR 98 (231)
T ss_dssp CHHHHHHTEEEEE
T ss_pred CHHHHhhcEEEEe
Confidence 9998889988733
No 54
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.39 E-value=8e-08 Score=98.76 Aligned_cols=62 Identities=19% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCc-e-EEEEEe--ccccCCCCCCCCCCcc----chhccCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHL-T-GYVDFA--ESIKDHHPQHNQSFPW----SSWSNCEPP 91 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~G-t-g~Idl~--~~Ig~mvfQ~~nLFPH----tsveNValp 91 (530)
..|+.++|+||||||||||+ |++.++..+++| + ++++.+ +.++ ++||+..+||+ ++.+|+ ++
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLl--r~L~Gl~~p~~G~~pI~vdg~~~~~i~-~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLS--RTLCSYALKFNAYQPLYINLDPQQPIF-TVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHH--HHHHHTTHHHHCCCCEEEECCTTSCSS-SCSSCCEEEECCSCCCTTCTT-CS
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhCcccccCCceeEEEcCCccCCee-eeccchhhcccccccchhhhh-cc
Confidence 58999999999999999998 999999988888 7 888854 5566 88999988775 333788 53
No 55
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.39 E-value=4.2e-08 Score=90.97 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=61.7
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC--CCceEEEEEe-------ccccCCCCCCCCCCccchh----
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE--PHLTGYVDFA-------ESIKDHHPQHNQSFPWSSW---- 85 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~--~~Gtg~Idl~-------~~Ig~mvfQ~~nLFPHtsv---- 85 (530)
+.|.-+...|++++|+||||||||||+ +++.+...+ ..|++.+.-+ ..+ .++||+..+|+.+++
T Consensus 7 ~~~~~~~~~G~ii~l~GpsGsGKSTLl--k~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi-~y~fq~~~~f~~~~~~~~f 83 (219)
T 1s96_A 7 HHHHHHMAQGTLYIVSAPSGAGKSSLI--QALLKTQPLYDTQVSVSHTTRQPRPGEVHGE-HYFFVNHDEFKEMISRDAF 83 (219)
T ss_dssp --------CCCEEEEECCTTSCHHHHH--HHHHHHSCTTTEEECCCEECSCCCTTCCBTT-TBEECCHHHHHHHHHTTCE
T ss_pred ccccccCCCCcEEEEECCCCCCHHHHH--HHHhccCCCCceEEEEEecCCCCCcccccCc-eEEECCHHHHHHHHhcCHH
Confidence 444455578999999999999999996 555554443 3344443311 112 366899999999554
Q ss_pred -ccCCCCC----hhhHHHHHHHHHHHHHHHhHHhcc--------cchhHHHHHhhh-------hccchHHHHHHHh
Q 043574 86 -SNCEPPT----LSNCKAQLETCLESMAERGIKLGT--------ISSQQIFTTLNK-------WHGLNTALRRILS 141 (530)
Q Consensus 86 -eNValp~----~~d~r~r~e~aLE~~a~~~v~~g~--------~~s~~i~~~l~~-------~h~l~tal~r~~~ 141 (530)
||+.+.. .. ++.++++|+. |. -+.++|.+.+.+ .|.++.+.+|+..
T Consensus 84 ~E~~~~~~~~yg~~--~~~v~~~l~~--------G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~ 149 (219)
T 1s96_A 84 LEHAEVFGNYYGTS--REAIEQVLAT--------GVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRG 149 (219)
T ss_dssp EEEEEETTEEEEEE--HHHHHHHHTT--------TCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHT
T ss_pred HHHHHHHhccCCCC--HHHHHHHHhc--------CCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHH
Confidence 8876632 11 2345544442 32 133455554442 5777777777644
No 56
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.36 E-value=6.3e-08 Score=88.16 Aligned_cols=53 Identities=28% Similarity=0.287 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccch
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSS 84 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHts 84 (530)
..|++++|+||||||||||+ +++.++. + |.+++... ..++ ++||+..+||+++
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl--~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI--KKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVD-YYFIDKTIFEDKL 84 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH--HHHHHHS-T--TTEEECCCEECSCCCSSCCBTTT-BEECCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHhhC-C--CcEEEeecccCCCCCcccccCCe-EEECCHHHHHHhh
Confidence 47899999999999999997 6666665 3 66665311 1223 6689999999854
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.34 E-value=1.1e-07 Score=100.87 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchh-ccC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSW-SNC 88 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsv-eNV 88 (530)
..|+.++|.||||||||||+ +++.++..|++|++++ ...++ ++||+..+++..++ +|+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLl--k~l~Gl~~p~~G~I~~--~~~i~-~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFV--KMLAGVEEPTEGKVEW--DLTVA-YKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHH--HHHHTSSCCSBSCCCC--CCCEE-EECSSCCCCCSSBHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhcCCCCCceEEEE--eeEEE-EEecCccCCCCCcHHHHH
Confidence 46899999999999999999 9999999999777765 45566 78999887766444 554
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.29 E-value=1e-07 Score=87.93 Aligned_cols=35 Identities=20% Similarity=0.013 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYV 63 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~I 63 (530)
..|+.++|+||||||||||+ +++.++ .|++|++..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl--~~l~Gl-~p~~G~I~~ 54 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLA--MAKAVQ-ALQSKQVSR 54 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHH--HHHHHH-HHHTTSCSE
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcC-CCcCCeeee
Confidence 46899999999999999998 999999 888887753
No 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.28 E-value=3.7e-07 Score=89.89 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=49.8
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhc-cCCCC
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWS-NCEPP 91 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsve-NValp 91 (530)
.+|++....-..|+.++|+||||||||||+ +++.++. +|++. . .++|+..+|+.++.+ ||.+.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl--~lL~gl~---~G~I~-------~-~v~q~~~lf~~ti~~~ni~~~ 177 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLC--NSLIHFL---GGSVL-------S-FANHKSHFWLASLADTRAALV 177 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHH--HHHHHHH---TCEEE-------C-GGGTTSGGGGGGGTTCSCEEE
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHH--HHHhhhc---CceEE-------E-EecCccccccccHHHHhhccC
Confidence 467776666678999999999999999998 7777776 44542 1 457999999988775 99884
No 60
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.27 E-value=1.9e-07 Score=90.91 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------------ccccCCCCCCCCCCccchh-ccC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------------ESIKDHHPQHNQSFPWSSW-SNC 88 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------------~~Ig~mvfQ~~nLFPHtsv-eNV 88 (530)
.|++++|+||||||||||+ +++.++..+++|++.+.=. ..++ ++||+++++|+.++ +|+
T Consensus 101 ~g~vi~lvG~nGsGKTTll--~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI--AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP-VIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH--HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCC-EECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH--HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHH
Confidence 5789999999999999997 7777777778777776511 1123 66899999999544 666
Q ss_pred C
Q 043574 89 E 89 (530)
Q Consensus 89 a 89 (530)
.
T Consensus 178 ~ 178 (304)
T 1rj9_A 178 Q 178 (304)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.26 E-value=4.8e-07 Score=87.06 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEE---E----------Ee-ccccCCCCCCC-----CCCccchhcc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYV---D----------FA-ESIKDHHPQHN-----QSFPWSSWSN 87 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~I---d----------l~-~~Ig~mvfQ~~-----nLFPHtsveN 87 (530)
.++.++|+||||||||||+ +++. ...+..|++.+ + +. ..++ +++|.+ ++||+++++|
T Consensus 164 ~G~i~~l~G~sG~GKSTLl--n~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g-~v~d~pg~~~~~l~~~lt~e~ 239 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSIL--SRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGS-FVGDTPGFSKVEATMFVKPRE 239 (302)
T ss_dssp TTCEEEEECSTTSSHHHHH--HHHH-SCCCCCSCC---------CCCCEEEEEETTTE-EEESSCCCSSCCGGGTSCGGG
T ss_pred cCcEEEEECCCCCCHHHHH--HHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCc-EEEECcCcCcCcccccCCHHH
Confidence 4679999999999999996 5555 67777777766 1 11 1344 455554 5568876699
Q ss_pred C--CCC
Q 043574 88 C--EPP 91 (530)
Q Consensus 88 V--alp 91 (530)
+ .++
T Consensus 240 l~~~f~ 245 (302)
T 2yv5_A 240 VRNYFR 245 (302)
T ss_dssp GGGGCG
T ss_pred HHHHHH
Confidence 9 555
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.21 E-value=4.1e-07 Score=94.66 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchh-ccC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSW-SNC 88 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsv-eNV 88 (530)
..|+.++|+||||||||||+ +++.++..+++|++++ ...|+ ++||+..+++..++ +|+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLl--k~l~Gl~~p~~G~i~~--~~~i~-~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFV--KMLAGVEEPTEGKIEW--DLTVA-YKPQYIKADYEGTVYELL 368 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHH--HHHHTSSCCSBCCCCC--CCCEE-EECSSCCCCCSSBHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCeEEEE--CceEE-EEecCCcCCCCCcHHHHH
Confidence 47899999999999999999 9999999999777764 44566 78998877666433 443
No 63
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.20 E-value=2e-07 Score=81.01 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=37.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-----------ccccCCCCCCCCCCccchh-ccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-----------ESIKDHHPQHNQSFPWSSW-SNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-----------~~Ig~mvfQ~~nLFPHtsv-eNVal 90 (530)
..|++++|+||||||||||+ +++.++.. ..++... ..+ .++||+..+|++++. +|+..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~--~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV--RALVKALA----EIKISISHTTRPKRPGDQEGV-DYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH--HHHHHHSS----SEEECCCEECSCCCTTCCBTT-TBEECCHHHHHHHHHHTCEEE
T ss_pred CCCcEEEEECcCCCCHHHHH--HHHHhhCC----CeEEeceeccCCCchhHhcCc-eEEeccHHHHHHHHhcCcEEe
Confidence 36899999999999999996 55555532 2222210 112 266798889999654 55543
No 64
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.19 E-value=4.7e-07 Score=95.36 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=43.0
Q ss_pred hhhHHHHH--hhhh-ccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCC-CCceEEEE--------------EeccccCC
Q 043574 11 RPLLETVL--NNHA-QHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKE-PHLTGYVD--------------FAESIKDH 72 (530)
Q Consensus 11 rp~le~vL--~~~~-qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-~~Gtg~Id--------------l~~~Ig~m 72 (530)
||+++.+= .... ...-.-..++|+||||||||||+ +++.|+..| ++|.++++ +.+.++ +
T Consensus 25 r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL--~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~-~ 101 (608)
T 3szr_A 25 RPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVL--EALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVS-Y 101 (608)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHH--HHHHSCC-------CCCSCEEEEEEECSSSSCCEEEES-C
T ss_pred HHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHH--HHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEe-e
Confidence 67776652 1111 11123345999999999999998 888888766 56655432 112344 7
Q ss_pred CCCCCCCCccchh-ccC
Q 043574 73 HPQHNQSFPWSSW-SNC 88 (530)
Q Consensus 73 vfQ~~nLFPHtsv-eNV 88 (530)
+||+++++|+.++ +|+
T Consensus 102 v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 102 QDYEIEISDASEVEKEI 118 (608)
T ss_dssp C---CCCCCHHHHHTTH
T ss_pred ecccccCCCHHHHHHHH
Confidence 7899999999554 776
No 65
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.16 E-value=2.9e-07 Score=90.72 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=45.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------cccc-CCCCCCCCCCccchh-ccC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIK-DHHPQHNQSFPWSSW-SNC 88 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig-~mvfQ~~nLFPHtsv-eNV 88 (530)
..|++++|+|||||||||++ +.+.++..+++|++.+.=. +.++ ++++|+++++|+.++ +|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll--~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTI--AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHH--HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH--HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 46889999999999999997 6667776777777776511 1122 255799999999544 777
Q ss_pred CC
Q 043574 89 EP 90 (530)
Q Consensus 89 al 90 (530)
.+
T Consensus 205 ~~ 206 (328)
T 3e70_C 205 QH 206 (328)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 66
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.08 E-value=1.4e-06 Score=77.86 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=35.7
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-CceEEEEE
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-HLTGYVDF 65 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-~Gtg~Idl 65 (530)
.+++.+..........|+.++|+||||||||||+ +++.++..+. ...++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~--~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLS--NPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH--HHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH--HHHHHHHhhcCCceEEEec
Confidence 4566666665544678899999999999999997 6666654432 12555553
No 67
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.07 E-value=1.4e-06 Score=91.13 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
..|++++|+||||||||||+ +++.++..|++|+++++ .+.++ ..||+...++. ++.+|+..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl--~~l~Gl~~p~~G~i~~~-~~~i~-~~~q~~~~~~~~tv~~~l~~ 353 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFA--RILVGEITADEGSVTPE-KQILS-YKPQRIFPNYDGTVQQYLEN 353 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHH--HHHTTSSCCSBCCEESS-CCCEE-EECSSCCCCCSSBHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCcEEEEC-CeeeE-eechhcccccCCCHHHHHHH
Confidence 47899999999999999999 99999999997776642 14555 66787555445 44466643
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.04 E-value=8.1e-07 Score=86.26 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-e--c--------------cccCCCCCCCC-CCccchh-c
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-A--E--------------SIKDHHPQHNQ-SFPWSSW-S 86 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-~--~--------------~Ig~mvfQ~~n-LFPHtsv-e 86 (530)
..|++++|+|||||||||++ +.+.++..+++|++.+.= + + .++ +++|++. ++|+.++ +
T Consensus 98 ~~g~vi~lvG~nGsGKTTll--~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~~~~~~v~e 174 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSL--GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAATVLSK 174 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHH--HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCC--CCCHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH--HHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCce-EEEecCCccCHHHHHHH
Confidence 36789999999999999997 677777667777777651 0 0 133 5678888 8888444 7
Q ss_pred cCC
Q 043574 87 NCE 89 (530)
Q Consensus 87 NVa 89 (530)
|+.
T Consensus 175 ~l~ 177 (302)
T 3b9q_A 175 AVK 177 (302)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.04 E-value=1.8e-06 Score=88.12 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=56.8
Q ss_pred CCCcccccchhhHHHHHhhhhccC----------------CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 2 VNKAWKIIPRPLLETVLNNHAQHH----------------RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 2 ~~k~w~iiprp~le~vL~~~~qi~----------------~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
+++.|++++.+.|+.|=-....-. ..+..++|+||||||||||+ +++.++..+++|++.++-
T Consensus 27 ~~~~~k~~~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl--n~L~Gl~~p~~GsI~~~g 104 (413)
T 1tq4_A 27 FNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI--NTLRGIGNEEEGAAKTGV 104 (413)
T ss_dssp SCGGGCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH--HHHHTCCTTSTTSCCCCC
T ss_pred hccccccCCHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH--HHHhCCCCccCceEEECC
Confidence 356788888887765533222210 12238999999999999998 888888888877776542
Q ss_pred ecccc--CCCCCCCCCCcc-chhccCCCC
Q 043574 66 AESIK--DHHPQHNQSFPW-SSWSNCEPP 91 (530)
Q Consensus 66 ~~~Ig--~mvfQ~~nLFPH-tsveNValp 91 (530)
. +++ ..++|+ ..+|+ +.+||+.++
T Consensus 105 ~-~~t~~~~v~q~-~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 105 V-EVTMERHPYKH-PNIPNVVFWDLPGIG 131 (413)
T ss_dssp -----CCCEEEEC-SSCTTEEEEECCCGG
T ss_pred e-ecceeEEeccc-cccCCeeehHhhccc
Confidence 1 221 245677 46788 555998764
No 70
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.00 E-value=2.4e-06 Score=75.26 Aligned_cols=27 Identities=33% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..++.++|+||||||||||+ +++.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~--~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLA--QALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHH--HHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHH--HHHHHHh
Confidence 46789999999999999997 7777653
No 71
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.00 E-value=3.8e-06 Score=86.63 Aligned_cols=71 Identities=17% Similarity=-0.001 Sum_probs=43.9
Q ss_pred HhhhhccCCCCCe--EEEEcCCCCChhhHHHHHHHhhcCC-C-CCce--EEEEEeccccCCCCCCCCCCcc-chhccCCC
Q 043574 18 LNNHAQHHRVPQP--LIIHGPRGVGKTTLFLERLLKDLNK-E-PHLT--GYVDFAESIKDHHPQHNQSFPW-SSWSNCEP 90 (530)
Q Consensus 18 L~~~~qi~~~gr~--lVL~GPSGvGKSTLLL~rLl~~l~~-~-~~Gt--g~Idl~~~Ig~mvfQ~~nLFPH-tsveNVal 90 (530)
|++....-..|+. ++|+||||||||||+ +++.++.- + +... -.. ..+.++ +++|+.+++|+ ++++|+.+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLl--n~L~G~~l~g~~~~~~~~~~-~~~~i~-~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM--DTLFNTKFEGEPATHTQPGV-QLQSNT-YDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHH--HHHHTSCC-------CCSSC-EEEEEE-EEEEC--CEEEEEEEEEECC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHH--HHHhCccccCCcCCCCCccc-eEeeEE-EEeecCccccccchhhhhhh
Confidence 4555555678899 999999999999997 66666521 1 0000 000 012344 67899999999 55599999
Q ss_pred CC
Q 043574 91 PT 92 (530)
Q Consensus 91 p~ 92 (530)
+.
T Consensus 106 g~ 107 (427)
T 2qag_B 106 GD 107 (427)
T ss_dssp CC
T ss_pred hh
Confidence 65
No 72
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.00 E-value=3.3e-06 Score=72.77 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=26.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|++++|+||||||||||+ +++.+. ++.|.++++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~--~~La~~--~~~g~i~i~ 41 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA--EALANL--PGVPKVHFH 41 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH--HHHHTC--SSSCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHH--HHHHhc--cCCCeEEEc
Confidence 46789999999999999997 777665 344455554
No 73
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.97 E-value=1.8e-06 Score=82.75 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCC--CCCceEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNK--EPHLTGYV 63 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~--~~~Gtg~I 63 (530)
..+++++|+||||||||||+ +++.++.. +++|++.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~--~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTA--RVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHH--HHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHH--HHHHHHHhhCCCCCeEEE
Confidence 57789999999999999997 77777644 67777766
No 74
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.96 E-value=4.3e-06 Score=73.28 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
|.+|++++|+||||||||||+ +.+...++
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~-~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIK-NTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHH-HHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHH-HHHHhhCC
Confidence 346899999999999999995 66655543
No 75
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.90 E-value=5.3e-06 Score=76.16 Aligned_cols=27 Identities=41% Similarity=0.906 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
.|++||+|||||||||| +++|++.++.
T Consensus 1 ~RpIVi~GPSG~GK~Tl-~~~L~~~~~~ 27 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTL-LKKLFAEYPD 27 (186)
T ss_dssp CCCEEEECCTTSSHHHH-HHHHHHHCTT
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHhCCC
Confidence 47899999999999999 6999988754
No 76
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.90 E-value=3.2e-06 Score=85.06 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC-CCCceEEEEE--------eccccCCCCCCCCCCccchh-ccC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK-EPHLTGYVDF--------AESIKDHHPQHNQSFPWSSW-SNC 88 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-~~~Gtg~Idl--------~~~Ig~mvfQ~~nLFPHtsv-eNV 88 (530)
.|+.++|+||||||||||+ +++.+... +..|++.+.. ...++ .+||+..+++..++ ++.
T Consensus 214 ~G~~~~lvG~sG~GKSTLl--n~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~-~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLL--NALLGLQNEILTNDVSNVSGLGQHTTTAARLY-HFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp TTSEEEEECCTTSSHHHHH--HHHHCCSSCCCCC-------------CCCEEE-ECTTSCEEEECHHHHTCC
T ss_pred CCCEEEEECCCCccHHHHH--HHHhccccccccCCccccCCCCccceEEEEEE-EECCCCEecCcccHHHhh
Confidence 5789999999999999996 66666666 7766655431 12333 56788888888444 653
No 77
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.90 E-value=7.5e-06 Score=80.77 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=35.1
Q ss_pred hhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 19 NNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 19 ~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++....-..|+.++|+||||||||||+ +++.++.++++|.+.++
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll--~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLM--KALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHH--HHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHH--HHHHhcCCCCceEEEEC
Confidence 443333457899999999999999998 88888888887777776
No 78
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.89 E-value=2e-06 Score=90.59 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-Ee----------------ccccCCCCCCCCCCccchh-cc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-FA----------------ESIKDHHPQHNQSFPWSSW-SN 87 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-l~----------------~~Ig~mvfQ~~nLFPHtsv-eN 87 (530)
..|++++|+||||||||||+ +++.++..+++|.+.+. -+ +.++ +++|+.+++|..++ +|
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl--~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~-vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTI--GKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIAQHTGADSASVIFDA 367 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHH--HHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCC-EECCSTTCCHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHH--HHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCce-EEecccCcCHHHHHHHH
Confidence 36889999999999999997 66777766777787775 11 1223 66899999998544 77
Q ss_pred CCC
Q 043574 88 CEP 90 (530)
Q Consensus 88 Val 90 (530)
+.+
T Consensus 368 l~~ 370 (503)
T 2yhs_A 368 IQA 370 (503)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 79
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.89 E-value=5.4e-06 Score=72.82 Aligned_cols=25 Identities=40% Similarity=0.957 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
|++++|+||||||||||+ +.+...+
T Consensus 1 ~~ii~l~GpsGaGKsTl~-~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL-KKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHH-HHHHHHC
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 578999999999999996 4444443
No 80
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.88 E-value=4.4e-06 Score=88.89 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=40.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-ccccCCCCCCCCCC-ccchhccC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIKDHHPQHNQSF-PWSSWSNC 88 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig~mvfQ~~nLF-PHtsveNV 88 (530)
|++++|+||||||||||+ +++.++..+++|+. +. ..++ +.||+...+ +.++.+|+
T Consensus 378 GEiv~iiG~NGsGKSTLl--k~l~Gl~~p~~G~~---~~~~~i~-~~~q~~~~~~~~tv~e~~ 434 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLI--KLLAGALKPDEGQD---IPKLNVS-MKPQKIAPKFPGTVRQLF 434 (608)
T ss_dssp TCEEEEESCTTSSHHHHH--HHHHTSSCCSBCCC---CCSCCEE-EECSSCCCCCCSBHHHHH
T ss_pred ceEEEEECCCCCcHHHHH--HHHhcCCCCCCCcC---ccCCcEE-EecccccccCCccHHHHH
Confidence 478999999999999999 99999999997752 12 3344 667875543 33555655
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.88 E-value=2.1e-06 Score=86.16 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=43.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE-e--c--------------cccCCCCCCCC-CCccchh-c
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF-A--E--------------SIKDHHPQHNQ-SFPWSSW-S 86 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl-~--~--------------~Ig~mvfQ~~n-LFPHtsv-e 86 (530)
..|++++|+||||||||||+ +.+.++..+++|++.+.= + + .|+ +++|+.. ++|+.++ +
T Consensus 155 ~~g~vi~lvG~nGsGKTTll--~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~-~v~q~~~~~~p~~tv~e 231 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSL--GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAATVLSK 231 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHH--HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCSSSSCCHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHH--HHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeE-EEEecccccChhhhHHH
Confidence 36789999999999999997 667776666777777651 1 1 123 5678888 8888444 7
Q ss_pred cCC
Q 043574 87 NCE 89 (530)
Q Consensus 87 NVa 89 (530)
|+.
T Consensus 232 ~l~ 234 (359)
T 2og2_A 232 AVK 234 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.86 E-value=4.5e-06 Score=79.24 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=36.6
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-CceEEEEEeccccCCCCC
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-HLTGYVDFAESIKDHHPQ 75 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-~Gtg~Idl~~~Ig~mvfQ 75 (530)
+|++.. -..|+.++|+||||||||||+ +++.++.+++ +|.+.++= .+++ ..+|
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll--~~l~g~~~~~~~G~I~~~g-~~i~-~~~~ 69 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTI--ASMIDYINQTKSYHIITIE-DPIE-YVFK 69 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHH--HHHHHHHHHHCCCEEEEEE-SSCC-SCCC
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHH--HHHHHhCCCCCCCEEEEcC-Ccce-eecC
Confidence 555555 467889999999999999997 7777766554 56665442 3444 3444
No 83
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.86 E-value=5.5e-06 Score=81.14 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=44.4
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe---------------ccccCCCCCCCCCC
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA---------------ESIKDHHPQHNQSF 80 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~---------------~~Ig~mvfQ~~nLF 80 (530)
.+|++..-.-..++.++|+||+|||||||+ +++.++..++.|.+.|.-. ..++ ++||++++|
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl--~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~-~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTI--DALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA-RLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHH--HHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGST-TGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHH--HHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhhe-eeccCcccc
Confidence 345554444467899999999999999996 5555555556667666521 1223 567888888
Q ss_pred ccch
Q 043574 81 PWSS 84 (530)
Q Consensus 81 PHts 84 (530)
+..+
T Consensus 120 ~~~~ 123 (337)
T 2qm8_A 120 IRPS 123 (337)
T ss_dssp EECC
T ss_pred cccC
Confidence 7643
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.80 E-value=1e-05 Score=79.27 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++++....-..|+.++|+||||||||||+ +++.++.++++|.+.++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll--~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYI--KSIMEFIPKEERIISIE 205 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHH--HHGGGGSCTTSCEEEEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHH--HHHhCCCcCCCcEEEEC
Confidence 44444433357889999999999999998 88889888887776665
No 85
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.79 E-value=9.8e-06 Score=70.37 Aligned_cols=32 Identities=34% Similarity=0.603 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
|++++|+||||||||||+ +++.+ +..|..+++
T Consensus 2 g~ii~l~G~~GaGKSTl~--~~L~~---~~~g~~~i~ 33 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTC--KRLAA---QLDNSAYIE 33 (189)
T ss_dssp EEEEEEECSTTSSHHHHH--HHHHH---HSSSEEEEE
T ss_pred CeEEEEECCCCCcHHHHH--HHHhc---ccCCeEEEc
Confidence 578999999999999996 55554 334566666
No 86
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.79 E-value=8e-06 Score=73.13 Aligned_cols=26 Identities=38% Similarity=0.943 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.|++++|+||||||||||+ +.+...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl-~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL-KKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 5789999999999999996 4444433
No 87
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.78 E-value=8.6e-06 Score=80.17 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=50.4
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC--CCCC----ce-EEEEEe-----ccccCCCCCCCCC
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN--KEPH----LT-GYVDFA-----ESIKDHHPQHNQS 79 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~--~~~~----Gt-g~Idl~-----~~Ig~mvfQ~~nL 79 (530)
|-|+.+|.- --..|+++.|+||+|+|||||+ +.+.+.. .+++ |. +||+.. +++. ..+|++.+
T Consensus 118 ~~LD~lL~g---gi~~G~i~~I~G~~GsGKTTL~--~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~-~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGG---GIETQAITEVFGEFGSGKTQLA--HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR-EIAQNRGL 191 (349)
T ss_dssp HHHHHHHTS---SEESSEEEEEEESTTSSHHHHH--HHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH-HHHHTTTC
T ss_pred HHHHHHhcC---CCCCCeEEEEECCCCCCHHHHH--HHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHH-HHHHHcCC
Confidence 456666652 1247889999999999999997 4444443 3333 45 777743 2233 35688899
Q ss_pred CccchhccCCCCC
Q 043574 80 FPWSSWSNCEPPT 92 (530)
Q Consensus 80 FPHtsveNValp~ 92 (530)
++.++.+|+.+..
T Consensus 192 ~~~~v~~ni~~~~ 204 (349)
T 1pzn_A 192 DPDEVLKHIYVAR 204 (349)
T ss_dssp CHHHHGGGEEEEE
T ss_pred CHHHHhhCEEEEe
Confidence 9887779998743
No 88
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.78 E-value=1.3e-05 Score=71.14 Aligned_cols=33 Identities=39% Similarity=0.786 Sum_probs=24.9
Q ss_pred hhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 21 HAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 21 ~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
|.-+...+++++|+|||||||||| .+.+.+.++
T Consensus 5 ~~~~~~~~~~i~l~G~sGsGKsTl-~~~L~~~~~ 37 (204)
T 2qor_A 5 HHHHMARIPPLVVCGPSGVGKGTL-IKKVLSEFP 37 (204)
T ss_dssp ----CCCCCCEEEECCTTSCHHHH-HHHHHHHCT
T ss_pred cccccccCCEEEEECCCCCCHHHH-HHHHHHhCc
Confidence 334456889999999999999999 577777764
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=9e-06 Score=72.11 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHh--hcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLK--DLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~--~l~~~~~Gtg~Id 64 (530)
..|++++|+||||||||||+ +++. +...+..+..++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl--~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFA--AQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHH--HHHHHHHHHHHCCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHH--HHHHHHHHHhCCCeEEEEE
Confidence 47899999999999999997 5555 4423444566665
No 90
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.74 E-value=1.7e-05 Score=71.18 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=23.5
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
...|++++|+||||||||||+ +.+...++
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~-~~L~~~~~ 33 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVR-EAVFKDPE 33 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHH-HHHHHSTT
T ss_pred cCCCcEEEEECcCCCCHHHHH-HHHHhhCC
Confidence 357899999999999999995 66666554
No 91
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.73 E-value=7.3e-06 Score=72.56 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=27.1
Q ss_pred ccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceE--EEE
Q 043574 23 QHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTG--YVD 64 (530)
Q Consensus 23 qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg--~Id 64 (530)
.....|++++|+|||||||||+. +++.+... ..|.. +++
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~--~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLA--CALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHH--HHHHHHHH-HTTCCEEEEE
T ss_pred hcCCCCeEEEEECCCCCCHHHHH--HHHHHHHH-hcCceEEEec
Confidence 33457899999999999999996 55554332 33555 444
No 92
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.71 E-value=1.9e-05 Score=68.44 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
..|++++|+|||||||||++ +++.++..++
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~--~~L~~~~~~~ 33 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR--KRIFEDPSTS 33 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH--HHHHHCTTCC
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHHhhCCC
Confidence 35789999999999999996 5565554333
No 93
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.69 E-value=1.6e-05 Score=71.70 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=16.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHh-hcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLK-DLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~-~l~ 54 (530)
..|++++|+||||||||||+ +++. ++.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~--~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA--NKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHH--HHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHhcCC
Confidence 46889999999999999996 5555 553
No 94
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.68 E-value=1.4e-05 Score=69.88 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=18.5
Q ss_pred CCCCeEEEEcCCCCChhhHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLL 45 (530)
..|++++|+||||||||||+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 46899999999999999996
No 95
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.68 E-value=1.4e-05 Score=77.16 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=41.7
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchhccCC
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSWSNCE 89 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsveNVa 89 (530)
++++.+.......+..+.+++|+||||||||||+ +.+...+.. . |. ..++..+++|+.-+||++..+|+.
T Consensus 15 ~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla-~~L~~~l~~-~-g~-----~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 15 FLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS-IQIYNHLME-K-YG-----GEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp HHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH-HHHHHHHHH-H-HG-----GGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH-HHHHHHhhh-c-CC-----CCceEEEeccccccCChHHHHHHh
Confidence 3555555543333556788999999999999995 555444432 1 10 001111235777788887766653
No 96
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.67 E-value=1.8e-05 Score=82.77 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceE
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTG 61 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg 61 (530)
+..|++++|+||||||||||+ +++.++..|+.|++
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLl--kiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVL--KILAGEIIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHH--HHHTTSSCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHH--HHHhcCCCCCCCcc
Confidence 568999999999999999999 99999999987765
No 97
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.66 E-value=2e-05 Score=70.17 Aligned_cols=41 Identities=24% Similarity=0.143 Sum_probs=29.2
Q ss_pred hhhHHHHHhhhhcc-CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 11 RPLLETVLNNHAQH-HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 11 rp~le~vL~~~~qi-~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+.+++.+....... ...+.+++|+||||||||||+ +++.+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~--~~l~~~ 45 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA--NQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH--HHHHHH
Confidence 44666666654443 456789999999999999996 444443
No 98
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=2.5e-05 Score=72.61 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+..|++++|+|||||||||| ++.|...++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL-~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHI-KNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHH-HHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHH-HHHHHhhCC
Confidence 34789999999999999999 577777654
No 99
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.63 E-value=2.7e-05 Score=66.57 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=26.1
Q ss_pred ccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 23 QHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 23 qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+.+..++.++|+|||||||||++ +++.+.. |..+++
T Consensus 3 ~~~~~g~~i~l~G~~GsGKSTl~--~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 3 TTNHDHHIYVLMGVSGSGKSAVA--SEVAHQL----HAAFLD 38 (175)
T ss_dssp CCCTTSEEEEEECSTTSCHHHHH--HHHHHHH----TCEEEE
T ss_pred ccCCCCcEEEEEcCCCCCHHHHH--HHHHHhh----CcEEEe
Confidence 34456889999999999999996 5555431 455555
No 100
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.63 E-value=9.6e-06 Score=79.82 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYV 63 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~I 63 (530)
.|+.++|+||||||||||+ +++.+...+..|++.+
T Consensus 172 ~G~~~~lvG~sG~GKSTLl--n~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLL--NAISPELGLRTNEISE 206 (307)
T ss_dssp TTSEEEEEESHHHHHHHHH--HHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHH--HHhcccccccccceee
Confidence 5789999999999999997 6777766777555554
No 101
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.61 E-value=1.5e-05 Score=72.71 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=25.1
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHh---hcCCCCCce
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLK---DLNKEPHLT 60 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~---~l~~~~~Gt 60 (530)
...++.++|+||+|||||||+ +++. ++..++.|.
T Consensus 24 ~~~~~~i~l~G~~GsGKSTl~--k~La~~lg~~~~~~G~ 60 (246)
T 2bbw_A 24 ASKLLRAVILGPPGSGKGTVC--QRIAQNFGLQHLSSGH 60 (246)
T ss_dssp --CCCEEEEECCTTSSHHHHH--HHHHHHHCCCCEEHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH--HHHHHHhCCeEecHHH
Confidence 445789999999999999997 6666 665555443
No 102
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.59 E-value=3.2e-05 Score=68.49 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|++++|+||||||||||+ +++.+.. |..+++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~--~~L~~~~----g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIA--HGVADET----GLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHH--HHHHHHH----CCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHH--HHHHHhh----CCeEEc
Confidence 46789999999999999996 5555432 455555
No 103
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.58 E-value=3e-05 Score=82.61 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceE
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTG 61 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg 61 (530)
...|++++|+||||+|||||+ +++.++..|++|++
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLL--kiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTAL--KILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHH--HHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHH--HHHhcCCCCCCceE
Confidence 458999999999999999999 99999999997764
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.58 E-value=3.5e-05 Score=80.33 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCce
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLT 60 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gt 60 (530)
-..|+.++|+||||||||||+ +++.++..|++|+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLl--k~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAV--KILAGQLIPNLCG 77 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHH--HHHHTSSCCCTTT
T ss_pred CCCCCEEEEECCCCCCHHHHH--HHHhCCCCCCCCc
Confidence 368999999999999999999 9999998888777
No 105
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.57 E-value=5.4e-05 Score=77.38 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYV 63 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~I 63 (530)
+|++. ..-..|+.++|.||||||||||+ +++.++..++.|.+.+
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl--~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLL--GMMARYTRADVIVVGL 190 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHH--HHHHHHSCCSEEEEEE
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHH--HHHhcccCCCeEEEEE
Confidence 56666 44468999999999999999998 8888888888554443
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.53 E-value=2.7e-05 Score=82.07 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.5
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHH
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLL 45 (530)
|++-.-.-..|++++|+||||||||||+
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 3333333358999999999999999994
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.53 E-value=3.3e-05 Score=70.78 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+|++....-..|.+++|.||||||||||+ +++.++
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~--k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVC--EKIMEL 48 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHH--HHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHH--HHHHHH
Confidence 45554444457789999999999999997 666653
No 108
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=4.4e-05 Score=64.81 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++.++|+|||||||||++ +++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~--~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG--RQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH--HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH--HHHHHH
Confidence 4678999999999999997 666654
No 109
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.48 E-value=3.3e-05 Score=82.05 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=33.9
Q ss_pred HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCce
Q 043574 18 LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLT 60 (530)
Q Consensus 18 L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gt 60 (530)
|.+.. .-..|+.++|+||||+|||||+ +++.++..|++|+
T Consensus 108 l~~vs-~i~~Ge~~~LiG~NGsGKSTLl--kiL~Gll~p~~G~ 147 (607)
T 3bk7_A 108 LYRLP-IVKDGMVVGIVGPNGTGKTTAV--KILAGQLIPNLCE 147 (607)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHH--HHHTTSSCCCTTT
T ss_pred eCCCC-CCCCCCEEEEECCCCChHHHHH--HHHhCCCCCCCCc
Confidence 34443 3478999999999999999999 9999999888777
No 110
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.48 E-value=2.8e-05 Score=81.26 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
++++|+||||||||||+ +++.++..+++|+++++
T Consensus 30 e~~~liG~nGsGKSTLl--~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTM--AGFVTALIPDLTLLNFR 63 (483)
T ss_dssp SEEEEECCTTSSHHHHH--HHHHHHHCCCTTTCCCC
T ss_pred ceEEEECCCCCcHHHHH--HHHhcCCCCCCCEEEEC
Confidence 89999999999999998 99999999998877665
No 111
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.43 E-value=1.9e-05 Score=73.31 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHh---hcCCCCCceEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLK---DLNKEPHLTGY 62 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~---~l~~~~~Gtg~ 62 (530)
..+..++|.|||||||||++ +++. ++..++.|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~--k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC--KALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH--HHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH--HHHHHhcCCCcCCCCcee
Confidence 45789999999999999997 7777 66666655555
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.41 E-value=2.7e-05 Score=70.78 Aligned_cols=33 Identities=36% Similarity=0.493 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
|+.++|+||||||||||+ +++.++.. ++| +.++
T Consensus 1 G~~i~i~G~nG~GKTTll--~~l~g~~~-~~G-i~~~ 33 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI--HKASEVLK-SSG-VPVD 33 (189)
T ss_dssp CCCEEEESCCSSCHHHHH--HHHHHHHH-HTT-CCCE
T ss_pred CCEEEEECCCCChHHHHH--HHHHhhcc-cCC-EEEc
Confidence 578999999999999996 66666554 555 4443
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.41 E-value=9.6e-05 Score=62.98 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
++.+++|+|||||||||+. +.+.+.++
T Consensus 2 ~~~~i~l~G~~GsGKST~a-~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIV-RCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHhcC
Confidence 4678999999999999995 66666653
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.41 E-value=7e-05 Score=76.44 Aligned_cols=59 Identities=17% Similarity=0.036 Sum_probs=29.2
Q ss_pred EEEEcCCCCChhhHHHHHHHhhcCCCCCc--eEEEE----Ee-ccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDLNKEPHL--TGYVD----FA-ESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l~~~~~G--tg~Id----l~-~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
++|+||||||||||+ +.+ .+...+..+ ...++ .. ..++ +++|+.+++++ ++++|+.++.
T Consensus 34 I~lvG~sGaGKSTLl-n~L-~g~~~~~~~~~~~~~~~~~t~~~~~i~-~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 34 LMVVGESGLGKSTLI-NSL-FLTDLYSPEYPGPSHRIKKTVQVEQSK-VLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EEEECCTTSSHHHHH-HHH-TTCCCCCCCCCSCC-----CCEEEEEE-CC------CEEEEEEECC----
T ss_pred EEEECCCCCcHHHHH-HHH-hCCCCCCCCCCCcccCCccceeeeeEE-EEEecCCcccceeeeechhhhh
Confidence 699999999999996 444 444332111 11111 00 1234 67899999999 5669998854
No 115
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.39 E-value=6.2e-05 Score=72.63 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcC--------CCCCceEEEE
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLN--------KEPHLTGYVD 64 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~--------~~~~Gtg~Id 64 (530)
++++|+||||||||||+ +.+.+.. .++.|++.||
T Consensus 5 ~v~~i~G~~GaGKTTll--~~l~~~~~~~~~aVi~~d~G~i~id 46 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLL--RHILNEQHGYKIAVIENEFGEVSVD 46 (318)
T ss_dssp EEEEEEESSSSSCHHHH--HHHHHSCCCCCEEEECSSCCSCCEE
T ss_pred cEEEEEecCCCCHHHHH--HHHHhhcCCCcEEEEEecCcccCcc
Confidence 57999999999999996 5555554 4566666665
No 116
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.38 E-value=3.5e-05 Score=76.55 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=38.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCC-CceEEEEEecccc-------CCCCC-----CCCCCccchhccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEP-HLTGYVDFAESIK-------DHHPQ-----HNQSFPWSSWSNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~-~Gtg~Idl~~~Ig-------~mvfQ-----~~nLFPHtsveNVal 90 (530)
..++.++|+||||||||||+ +++.++..++ +|.+.+.- .++. .+++| +...|.-+..+|+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll--~~l~~~~~~~~~g~I~~~e-~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI--ASMIDYINQTKSYHIITIE-DPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH--HHHHHHHHHHSCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHHhhcCcCCCcEEEEec-ccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 46789999999999999996 5555554443 56654331 1211 13456 445554455577776
No 117
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.35 E-value=6.3e-05 Score=77.10 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHH--HhhcCCCCCceEEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERL--LKDLNKEPHLTGYVDF 65 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rL--l~~l~~~~~Gtg~Idl 65 (530)
..|++++|+||||||||||+ ++ ++++..+++|.+||+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~--~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFS--IQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHH--HHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEcCCCCCHHHHH--HHHHHHHHHhCCCCEEEEEE
Confidence 47899999999999999997 54 6788776778888874
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.34 E-value=0.00016 Score=63.90 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=31.6
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhh-cCCC-----CCceEEEEE
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKD-LNKE-----PHLTGYVDF 65 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~-l~~~-----~~Gtg~Idl 65 (530)
|-|+.+|.- --..|++++|+||+|+|||||+ ..+... ...+ ..+.+|++.
T Consensus 11 ~~LD~~l~g---gi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 11 KELDKLLQG---GIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp HHHHHHTTT---SEETTSEEEEECCTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred hHHHHhhcC---CCcCCeEEEEECCCCCcHHHHH-HHHHHHHhCchhcCCCCCeEEEEEC
Confidence 345555542 1246899999999999999996 444332 2222 455666663
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.34 E-value=2.7e-05 Score=75.88 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCC----ceEEE
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPH----LTGYV 63 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~----Gtg~I 63 (530)
++.++|+||||||||||+ +++.++..+++ |.+++
T Consensus 170 g~k~~IvG~nGsGKSTLl--k~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLV--NKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp CEEEEEECCTTSHHHHHH--HHHHHHTTCEEECCTTHHHH
T ss_pred hCeEEEECCCCCCHHHHH--HHHHHHhCCCcchhhHHHHH
Confidence 788999999999999998 88888888876 55544
No 120
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.33 E-value=0.00014 Score=72.11 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=32.1
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHL 59 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~G 59 (530)
+++.. ..-..|+.++|.||||||||||+ +++.++..++.|
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl--~~I~g~~~~~~g 100 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLL--GMICNGASADII 100 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHH--HHHHHHSCCSEE
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHH--HHHhcCCCCCEE
Confidence 55555 33458999999999999999997 888888888744
No 121
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.32 E-value=0.00013 Score=75.93 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|+.++|+||+|||||||+ +++.++..++.|.+.|+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL--~aL~~~i~~~~giitie 294 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTL--NAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHH--HHHGGGSCTTCCEEEEE
T ss_pred hCCCEEEEECCCCCCHHHHH--HHHHhhCCCCCCEEEEc
Confidence 46788999999999999997 77777777776666654
No 122
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.31 E-value=0.00012 Score=66.72 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
...|++++|.||+|||||||+ +++.++
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~--~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYL--NHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHH--HTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHH--HHHHhc
Confidence 356889999999999999997 777776
No 123
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.30 E-value=8e-05 Score=83.89 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|+.++|+||||||||||+ +++.|+..+++|+++++
T Consensus 697 ~~GeivaIiGpNGSGKSTLL--klLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLI--NVLTGELLPTSGEVYTH 733 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHH--HHHTTSSCCSEEEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCCCCCceEEEEc
Confidence 48899999999999999999 99999999997777654
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.29 E-value=0.00012 Score=64.77 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+++.......++.++|+|||||||||+. +.+.+.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~-~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLG-KAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHH-HHHHHHc
Confidence 34444433456789999999999999995 5555544
No 125
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.29 E-value=0.00015 Score=69.78 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=27.7
Q ss_pred EEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE-------Ee-ccccCCCCCCCCCCcc-chhccCCCCC
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD-------FA-ESIKDHHPQHNQSFPW-SSWSNCEPPT 92 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id-------l~-~~Ig~mvfQ~~nLFPH-tsveNValp~ 92 (530)
++|+||||||||||+ +.+...-..+++| +.+. .. +.++ ..+|+.+++++ ++++|..++.
T Consensus 21 I~lvG~nG~GKSTLl-~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~-~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 21 LMVVGESGLGKSTLI-NSLFLTDLYPERV-ISGAAEKIERTVQIEAST-VEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EEEEEETTSSHHHHH-HHHHC-------------------------CE-EEEC---CCEEEEEEEEC----
T ss_pred EEEECCCCCCHHHHH-HHHhCCCccCCCC-cccCCcccCCcceEeeEE-EEecCCCcccCcchhhhhhhhh
Confidence 599999999999995 6555431233333 1110 00 1222 45688888888 5569998743
No 126
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.28 E-value=0.00014 Score=74.05 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 17 VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+|.+. ....+.+++|+||+|||||||+ +++.++..+++|.+.+.
T Consensus 158 ~L~~l--~~~~ggii~I~GpnGSGKTTlL--~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 158 NFRRL--IKRPHGIILVTGPTGSGKSTTL--YAGLQELNSSERNILTV 201 (418)
T ss_dssp HHHHH--HTSSSEEEEEECSTTSCHHHHH--HHHHHHHCCTTSCEEEE
T ss_pred HHHHH--HHhcCCeEEEECCCCCCHHHHH--HHHHhhcCCCCCEEEEe
Confidence 44444 2356789999999999999996 55555555566666554
No 127
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.26 E-value=0.00011 Score=65.91 Aligned_cols=23 Identities=43% Similarity=0.626 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.++|+||||||||||+ +++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl--~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV--KKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHHH--HHHHHHh
Confidence 4789999999999997 6666554
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.26 E-value=6.8e-05 Score=76.04 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=40.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCC-----CCceEEEEEecccc--C--CCCCCCCCCccchhccCCCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKE-----PHLTGYVDFAESIK--D--HHPQHNQSFPWSSWSNCEPPT 92 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~-----~~Gtg~Idl~~~Ig--~--mvfQ~~nLFPHtsveNValp~ 92 (530)
.|++++|+||||+|||||+++-+.+....+ ..+.+||+....+. . ...+...+.|..+.+|+.+..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~ 251 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYAR 251 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEec
Confidence 678999999999999999733344554433 23467776432111 0 011345555666678887743
No 129
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.24 E-value=0.00024 Score=80.03 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh-cCCC-C-CceEEEEEeccccCCCCCCC-CCCcc-chhccCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD-LNKE-P-HLTGYVDFAESIKDHHPQHN-QSFPW-SSWSNCEP 90 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~-l~~~-~-~Gtg~Idl~~~Ig~mvfQ~~-nLFPH-tsveNVal 90 (530)
..|+.++|+||||||||||+ +++.+ -..+ + ... ..+. +.+|+. .++++ ++.+|+.+
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLL--k~LagG~i~g~~~~~~------~~~~-~v~q~~~~~~~~ltv~e~l~~ 519 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLM--RAIANGQVDGFPTQEE------CRTV-YVEHDIDGTHSDTSVLDFVFE 519 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHH--HHHHHTCSTTCCCTTT------SCEE-ETTCCCCCCCTTSBHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhCCCcCCCccccc------eeEE-EEcccccccccCCcHHHHHHH
Confidence 48899999999999999997 66653 1100 0 000 0112 446764 67888 55588864
No 130
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.22 E-value=3.2e-05 Score=84.48 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=41.2
Q ss_pred chhhHH----HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-CCCceEEEEEeccccCCCCCCCCCCcc-c
Q 043574 10 PRPLLE----TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-EPHLTGYVDFAESIKDHHPQHNQSFPW-S 83 (530)
Q Consensus 10 prp~le----~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-t 83 (530)
.-|++| .|+++.... |+.++|+||||+|||||+ |++.++.. ++.|...-.....++ +++| +|++ +
T Consensus 557 rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlL--r~iagl~~~~~~G~~vpa~~~~i~-~v~~---i~~~~~ 627 (765)
T 1ewq_A 557 RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFL--RQTALIALLAQVGSFVPAEEAHLP-LFDG---IYTRIG 627 (765)
T ss_dssp CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHH--HHHHHHHHHHTTTCCBSSSEEEEC-CCSE---EEEECC
T ss_pred ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHH--HHHHhhhhhcccCceeehhcccee-eHHH---hhccCC
Confidence 457776 344443332 899999999999999998 88777642 333332100012344 4455 7888 4
Q ss_pred hhccCCCCC
Q 043574 84 SWSNCEPPT 92 (530)
Q Consensus 84 sveNValp~ 92 (530)
+.+|+..+.
T Consensus 628 ~~d~l~~g~ 636 (765)
T 1ewq_A 628 ASDDLAGGK 636 (765)
T ss_dssp C------CC
T ss_pred HHHHHHhcc
Confidence 448988754
No 131
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.20 E-value=0.00016 Score=63.00 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=40.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCc--eEEEEEeccccCCCCCCCCCCcc-chhccCCCCChhhHHHHHHHH
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHL--TGYVDFAESIKDHHPQHNQSFPW-SSWSNCEPPTLSNCKAQLETC 103 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~G--tg~Idl~~~Ig~mvfQ~~nLFPH-tsveNValp~~~d~r~r~e~a 103 (530)
.++.++|+||+|+|||||+ +++.+...+ +| .+|++.. ++. .+..--=|. +.++.+..-...+ ++.+.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~--~~i~~~~~~-~g~~~~~~~~~-~~~---~~~~~~~~~lLilDE~~~~~~~~-~~~l~~l 106 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL--QAWVAQALE-AGKNAAYIDAA-SMP---LTDAAFEAEYLAVDQVEKLGNEE-QALLFSI 106 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH--HHHHHHHHT-TTCCEEEEETT-TSC---CCGGGGGCSEEEEESTTCCCSHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHHHHHh-cCCcEEEEcHH-Hhh---HHHHHhCCCEEEEeCccccChHH-HHHHHHH
Confidence 7899999999999999996 555443322 34 5555422 221 111000022 2335544322222 5566666
Q ss_pred HHHHHHH
Q 043574 104 LESMAER 110 (530)
Q Consensus 104 LE~~a~~ 110 (530)
++.+.++
T Consensus 107 i~~~~~~ 113 (149)
T 2kjq_A 107 FNRFRNS 113 (149)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666554
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.19 E-value=4.4e-05 Score=68.69 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
+.++|+||||||||||+ +++.++..++
T Consensus 3 ~~v~IvG~SGsGKSTL~--~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI--TRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHH--HHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHH--HHHHHHhhhc
Confidence 67999999999999996 5555554443
No 133
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00019 Score=60.10 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+++|+||+||||||+. +.+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~-~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVA-AKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHH-HHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHh
Confidence 36899999999999995 6665654
No 134
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.16 E-value=0.0003 Score=69.62 Aligned_cols=27 Identities=44% Similarity=0.511 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
.+.+++|+||||||||||+ +++.++..
T Consensus 91 ~p~iigI~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHH--HHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHH--HHHHHHhc
Confidence 3447999999999999996 55655543
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.16 E-value=0.00026 Score=61.09 Aligned_cols=26 Identities=38% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..++.++|+||+|+|||||+ +.+...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~-~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLA-VATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHH-HHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 35899999999999999996 444443
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.14 E-value=0.00035 Score=66.76 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
...+.+++|+|||||||||+. +++.+.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla-~~L~~~~~ 58 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLR-SAIFEETQ 58 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHH-HHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHHhC
Confidence 345778999999999999995 77777653
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.13 E-value=0.0002 Score=62.28 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..|++++|+||+|+|||||+ ..+...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~-~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFS-LHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH-HHHHHH
Confidence 36899999999999999996 444433
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.00035 Score=65.77 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=27.9
Q ss_pred HHhhhh-ccCCCCCeEEEEcCCCCChhhHHHHHHHhh-cCCCCCceEEEE
Q 043574 17 VLNNHA-QHHRVPQPLIIHGPRGVGKTTLFLERLLKD-LNKEPHLTGYVD 64 (530)
Q Consensus 17 vL~~~~-qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~-l~~~~~Gtg~Id 64 (530)
.|.+.. .....+. +.|+||+|+||||++ +++.+ +..++.|.+.++
T Consensus 25 ~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~--~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 25 FLKSLSDQPRDLPH-LLLYGPNGTGKKTRC--MALLESIFGPGVYRLKID 71 (354)
T ss_dssp HHHTTTTCTTCCCC-EEEECSTTSSHHHHH--HTHHHHHSCTTCCC----
T ss_pred HHHHHHhhCCCCCe-EEEECCCCCCHHHHH--HHHHHHHcCCCCCeEEec
Confidence 344433 4344444 999999999999996 55555 777776665554
No 139
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.11 E-value=2.9e-05 Score=73.21 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=33.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCccchh-ccCCC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPWSSW-SNCEP 90 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHtsv-eNVal 90 (530)
++++|+||||||||||+ +++.++..+++|.+.++= +++....+....++||..+ .|+++
T Consensus 28 ~~~~i~GpnGsGKSTll--~~i~g~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTM--AAFVTALIPDLTLLHFRN-TTEAGATSGSRDKGLHGKLKAGVCY 87 (227)
T ss_dssp HHHHHHSCCSHHHHHHH--HHHHHHHSCCTTTC-------------------CGGGBCSSEEE
T ss_pred cEEEEECCCCCCHHHHH--HHHhcccccCCCeEEECC-EEcccCCccccccchhhHhhcCcEE
Confidence 57889999999999998 899999888877665542 3442122222356677444 66655
No 140
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.11 E-value=0.0002 Score=66.81 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=25.1
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCc
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHL 59 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~G 59 (530)
-..|++++|+||+|+|||||+ +.+.+...+++|
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~--~~ia~~~~~~~G 64 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFV--RQQALQWGTAMG 64 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHH--HHHHHHHHHTSC
T ss_pred CCCCeEEEEEeCCCCCHHHHH--HHHHHHHHHHcC
Confidence 457899999999999999997 555555444434
No 141
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.09 E-value=0.0003 Score=61.30 Aligned_cols=35 Identities=29% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|++++|+||+|+|||||+ +.+.. ....+.+|++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~--~~l~~--~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLA--LQTGL--LSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHH--HHHHH--HHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHH--HHHHH--HcCCcEEEEE
Confidence 46899999999999999996 34433 2233455555
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.08 E-value=0.00038 Score=65.97 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=33.9
Q ss_pred EEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-cccc-----------CCCCCCC-CCCcc-chhccCCC
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-ESIK-----------DHHPQHN-QSFPW-SSWSNCEP 90 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~~Ig-----------~mvfQ~~-nLFPH-tsveNVal 90 (530)
++|+||+|||||||+ +++.+...+ .+|.+. .++. ..+||.. .++|. +..+|+..
T Consensus 47 vlL~Gp~GtGKTtLa--kala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA--KAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp EEEESSTTSCHHHHH--HHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred EEEECCCCCcHHHHH--HHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 999999999999997 777765443 234443 2321 1224543 56677 44477765
No 143
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.08 E-value=0.00026 Score=62.51 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+..++|.|||||||||++ +++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~--~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC--KAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHH--HHHHH
T ss_pred CeEEEEECCCCCCHHHHH--HHHHH
Confidence 467999999999999996 66654
No 144
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.07 E-value=0.00029 Score=61.86 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++.+++|+||+||||||+. +.+.+.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla-~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVG-EAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4568999999999999995 5555544
No 145
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.03 E-value=0.00035 Score=60.07 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+.+.+|+||||||||||+ +++..+
T Consensus 26 ~g~~~i~G~NGsGKStll--~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIG--DAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHH--HHHHHH
T ss_pred CCcEEEECCCCCCHHHHH--HHHHHH
Confidence 448999999999999997 666554
No 146
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.03 E-value=0.0003 Score=59.83 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+..++|+||+||||||+. +.+.+.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~-~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS-QLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999995 66666553
No 147
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.00035 Score=57.65 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.+++|+||+||||||+. +.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a-~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFA-KLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHH-HHH-HH
T ss_pred cEEEEECCCCCCHHHHH-HHH-HH
Confidence 36899999999999995 555 54
No 148
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.99 E-value=0.00065 Score=61.70 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+-++|+||+|+|||||+ +++.+..
T Consensus 50 ~g~ll~G~~G~GKTtl~--~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA--RAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHH--HHHHHHT
T ss_pred CeEEEECCCCCCHHHHH--HHHHHHh
Confidence 34999999999999996 6665543
No 149
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.98 E-value=0.00015 Score=62.82 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
..+..++|+||+|||||||+ +++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl-~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSAL-NTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHH-TTTCC
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 46678999999999999995 55443
No 150
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.98 E-value=0.00034 Score=58.97 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
+.+++|+||+||||||+. +.+.+
T Consensus 2 ~~~I~i~G~~GsGKST~a-~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWA-REFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CeEEEEecCCCCCHHHHH-HHHHh
Confidence 467999999999999996 55554
No 151
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.98 E-value=0.00037 Score=61.42 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.+..++|+|||||||||++ +++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~--~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA--KNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH--HHHHT
T ss_pred CCeEEEEECCCCCCHHHHH--HHHHH
Confidence 5678999999999999996 55554
No 152
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.90 E-value=0.00029 Score=70.30 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKE 56 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~ 56 (530)
..+..++|+||||||||||+ +++.++.++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL--~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL--AAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH--HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHhcccC
Confidence 34569999999999999996 555544443
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.90 E-value=0.00044 Score=59.66 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..|..++|+|++||||||++ +++++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~--~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVS--MALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHH--HHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH--HHHHH
Confidence 35789999999999999996 55544
No 154
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.89 E-value=0.00044 Score=59.23 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++.+++|+||+||||||+. +.+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~-~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS-QALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHc
Confidence 4678999999999999995 6666655
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.88 E-value=0.00052 Score=60.65 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=31.7
Q ss_pred hHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 13 LLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 13 ~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
-|+.+|.. --..|++++|+||+|+|||||+ .++.........+.+|+..
T Consensus 11 ~LD~~l~g---Gl~~G~~~~i~G~~GsGKTtl~-~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 11 GVDEILHG---GIPERNVVLLSGGPGTGKTIFS-QQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp THHHHTTT---SEETTCEEEEEECTTSSHHHHH-HHHHHHHHHTTCCEEEEES
T ss_pred hHHHHcCC---CCCCCcEEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEEc
Confidence 35555432 1246889999999999999996 3444433333445777764
No 156
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.88 E-value=0.0007 Score=68.30 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 14 LETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 14 le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
...++++....-..++.++|+||+|+|||||+ +++.+.
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~--~~l~~~ 192 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLA--AALLEL 192 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHH--HHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHH--HHHHhh
Confidence 45667776665678899999999999999996 666553
No 157
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.87 E-value=0.00054 Score=59.73 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
...+..++|+|++||||||+. +.+.+.+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~-~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQS-KLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHH-HHHHHHHH
Confidence 346789999999999999995 66665543
No 158
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00058 Score=59.99 Aligned_cols=30 Identities=37% Similarity=0.378 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
..++|+||+||||||+. +++.++ |..+++.
T Consensus 3 ~~i~l~G~~GsGKST~~--~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIA--NLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEEECSTTSCHHHHH--HHHHTT-----TCCEEEH
T ss_pred cEEEEECCCCCCHHHHH--HHHHHC-----CCcccch
Confidence 46899999999999997 777763 3445653
No 159
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.85 E-value=0.0007 Score=58.68 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.|..++|+||+||||||+. +.+.+.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~-~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC-MNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999995 6666655
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.00097 Score=55.13 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=26.7
Q ss_pred hHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 13 LLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 13 ~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.+...... ..+..++|+||+|+|||||+ +.+.+.+
T Consensus 30 ~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 30 EIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp HHHHHHHHHTS--SSSCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhc--CCCCceEEECCCCCCHHHHH-HHHHHHH
Confidence 44555544333 34577999999999999994 6666655
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.0011 Score=61.60 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+-++|+||+|+|||||+ +++.+..
T Consensus 74 ~gvll~Gp~GtGKTtl~--~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA--RAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHH--HHHHHHT
T ss_pred CeEEEECCCcChHHHHH--HHHHHHc
Confidence 34999999999999996 6665543
No 162
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.83 E-value=0.0007 Score=57.48 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
+++|+||+||||||+. +.+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~-~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL-AKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHH-HHHHHHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 6899999999999995 777776653
No 163
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.83 E-value=0.00069 Score=61.22 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
-+.++|+||||+||||| +++++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl-~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTL-LKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHH-HHHHHHhcc
Confidence 46899999999999999 588888764
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.82 E-value=0.00065 Score=59.17 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+||+|||||||+ +++....
T Consensus 31 kv~lvG~~g~GKSTLl-~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL-SRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCC
Confidence 5899999999999995 6666543
No 165
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.81 E-value=0.00033 Score=68.05 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.| +++|+||||+|||||+ +++..+-
T Consensus 60 ~G-~~~lvG~NGaGKStLl--~aI~~l~ 84 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIV--DALGLLL 84 (415)
T ss_dssp SS-EEEEEESHHHHHHHHT--HHHHHHT
T ss_pred CC-cEEEECCCCCCHHHHH--HHHHHHh
Confidence 55 9999999999999997 7775443
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.80 E-value=0.001 Score=56.49 Aligned_cols=28 Identities=39% Similarity=0.648 Sum_probs=21.7
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
...+..++|+||+|+|||||+ +.+.+.+
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~-~~~~~~~ 69 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIA-RLLAKGL 69 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 334568999999999999995 6666654
No 167
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00051 Score=65.31 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=24.8
Q ss_pred HHhhhhccCCC---CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 17 VLNNHAQHHRV---PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 17 vL~~~~qi~~~---gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+|++....-.. ++.++|+|||||||||+. +++++
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~--~~La~ 70 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVG--KIMAR 70 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHH--HHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHH--HHHHH
Confidence 44444333334 899999999999999996 66654
No 168
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.79 E-value=0.00075 Score=58.05 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.++.++|+||+||||||+. +.+.+.+ +..+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~-~~l~~~~-----~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG-KELASKS-----GLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH-HHHHHHH-----CCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHH-HHHHHHh-----CCeEEEHH
Confidence 5678999999999999995 5555544 34455543
No 169
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.78 E-value=0.00067 Score=58.27 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++.++|+||+||||||+. +.+.+.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a-~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVG-SQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3578999999999999996 5555544
No 170
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.78 E-value=0.00032 Score=77.01 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=32.1
Q ss_pred cchhhHHHH------HhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 9 IPRPLLETV------LNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 9 iprp~le~v------L~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..-|++|.. +++.... ..|++++|+||||+|||||+ |++.++
T Consensus 583 ~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlL--r~iagl 630 (800)
T 1wb9_A 583 GRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYM--RQTALI 630 (800)
T ss_dssp ECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHH--HHHHHH
T ss_pred ccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHH--HHHHHH
Confidence 457999864 3443333 57899999999999999998 777764
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.74 E-value=0.0014 Score=56.91 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
.++.++|+||+|+|||||+ +.+.+.+........+++
T Consensus 51 ~~~~~ll~G~~G~GKT~la-~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI-HAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEE
Confidence 5789999999999999995 666665543322244444
No 172
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.00072 Score=58.44 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
.+..++|+||+||||||+. +.+.+.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~-~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA-TLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHHHHhh
Confidence 3578999999999999995 777666654
No 173
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.73 E-value=0.00032 Score=61.28 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+++|+||+||||||++ +.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~-~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV-EKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHH-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHHH
Confidence 6899999999999994 77776653
No 174
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.73 E-value=0.0019 Score=56.39 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
+.+.|+||+|+|||||+ +.+.+.+........++.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEE
Confidence 78999999999999995 666665543322234444
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.72 E-value=0.0006 Score=58.46 Aligned_cols=26 Identities=46% Similarity=0.678 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.|..++|+||+||||||+. +.+.+.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~-~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA-SRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4678999999999999996 5554543
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.71 E-value=0.00094 Score=62.14 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=28.1
Q ss_pred hHHHHHhhhhcc--CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 13 LLETVLNNHAQH--HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 13 ~le~vL~~~~qi--~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.+....... ...++.++|+||+|+|||||+ +.+.+.+
T Consensus 28 e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 28 QIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp HHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 445555444432 356778999999999999995 6666655
No 177
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.00097 Score=57.83 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..+.+++|+|++||||||+. +.+.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~-~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIA-TRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH-HHHHHHHH
Confidence 46789999999999999995 55555543
No 178
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.69 E-value=0.00033 Score=62.44 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..|.+++|+||+||||||+. +.+.+.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~-~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA-VELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 45789999999999999996 4444443
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.68 E-value=0.0011 Score=61.29 Aligned_cols=32 Identities=28% Similarity=0.176 Sum_probs=24.5
Q ss_pred hhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 21 HAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 21 ~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+......+..++|+||+||||||+. +++.+.+
T Consensus 22 ~~~~~~~~~~I~l~G~~GsGKsT~a-~~L~~~~ 53 (243)
T 3tlx_A 22 YACLSKPDGRYIFLGAPGSGKGTQS-LNLKKSH 53 (243)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred HHhccCCCcEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4444456778999999999999995 6666654
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.67 E-value=0.00082 Score=58.38 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+||+|||||||+ +++...
T Consensus 7 kv~lvG~~g~GKSTLl-~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL-SRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 4799999999999995 666654
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.66 E-value=0.00079 Score=58.88 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=22.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.++|+||+||||||++ +++.++ |.-+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~--~~L~~~-----g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA--QMFREL-----GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHH--HHHHHT-----TCEEEEHH
T ss_pred EEEEECCCCcCHHHHH--HHHHHC-----CCEEEEcc
Confidence 6899999999999997 666654 34556544
No 182
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.66 E-value=0.0005 Score=72.60 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=32.1
Q ss_pred hhHHHHHhhhhc-cCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCc
Q 043574 12 PLLETVLNNHAQ-HHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHL 59 (530)
Q Consensus 12 p~le~vL~~~~q-i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~G 59 (530)
|-+..++..... ....|+.++|+||||||||||+ +++.+...+.+|
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLa--r~La~~L~~~~G 398 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLA--RALAARLMEMGG 398 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHH--HHHHHHHHTTCS
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHH--HHHHHhhcccCC
Confidence 444555555432 3457899999999999999997 666665555543
No 183
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.65 E-value=0.00094 Score=58.16 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..+.+++|+||+||||||+. +.+.+.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~-~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQS-RKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 35788999999999999995 66666543
No 184
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.001 Score=57.36 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
..+..++|+||+||||||+. +++... |..+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~--~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA--ALLRSW-----GYPVLDL 38 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH--HHHHHT-----TCCEEEH
T ss_pred cCceEEEEECCCCCCHHHHH--HHHHHC-----CCEEEcc
Confidence 34567999999999999997 666653 3445553
No 185
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.65 E-value=0.00073 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+..++|+||+||||||+. +.+.+.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~-~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC-EKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 35678999999999999995 5555544
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0011 Score=56.33 Aligned_cols=24 Identities=46% Similarity=0.697 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.-++|+|++||||||| ++++...-
T Consensus 49 ~~i~vvG~~g~GKSsl-l~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSL-LTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHH-HHHHHHSS
T ss_pred CEEEEECCCCCCHHHH-HHHHhcCC
Confidence 3589999999999999 58887753
No 187
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.64 E-value=0.0011 Score=61.26 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=22.6
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
...+..++|+||+||||||+. +.+.+.+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla-~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIH-RIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHH-HHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHH-HHHHHhcC
Confidence 345678999999999999995 66655553
No 188
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.61 E-value=0.00049 Score=59.25 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++..++|+||+||||||+. +.+.+.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a-~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC-EKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4578999999999999995 5555544
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.61 E-value=0.0016 Score=60.22 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=25.1
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
...|.+++|.||+||||||+ ++++.+.+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~-~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTV-INEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHH-HHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHH-HHHHHHHHhc
Confidence 44788999999999999999 4777777754
No 190
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.61 E-value=0.0011 Score=56.28 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++.+++|+||+||||||+. +.+.+.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~-~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQC-ANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4578999999999999995 5555544
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.61 E-value=0.0014 Score=54.54 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=26.2
Q ss_pred hHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 13 LLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 13 ~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.++..... ..+..++|+||+|+|||||+ +.+.+.+
T Consensus 30 ~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la-~~~~~~~ 67 (187)
T 2p65_A 30 EIRRAIQILSR--RTKNNPILLGDPGVGKTAIV-EGLAIKI 67 (187)
T ss_dssp HHHHHHHHHTS--SSSCEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhC--CCCCceEEECCCCCCHHHHH-HHHHHHH
Confidence 34444444333 34567899999999999995 6666655
No 192
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.60 E-value=0.001 Score=57.20 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|.||+||||||+. +.+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~-~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS-AEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHHhc
Confidence 5899999999999995 6665555
No 193
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=57.75 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
..+..++|+||+||||||+. +.+.+.+. |--+|+.+
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~-~~La~~l~----g~~~id~d 43 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMA-EMIAAELD----GFQHLEVG 43 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHH-HHHHHHST----TEEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHhcC----CCEEeeHH
Confidence 45678999999999999996 44444311 34556644
No 194
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.55 E-value=0.0012 Score=56.23 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=16.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.+..++|+|++||||||+. +.+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a-~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA-HTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHH-HHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHhcC
Confidence 4678999999999999996 55555543
No 195
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.54 E-value=0.0014 Score=57.26 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+..++|+||+||||||+. +++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~-~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQC-EKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHH-HHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHc
Confidence 34567999999999999995 6666654
No 196
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.53 E-value=0.0011 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+++|.||+||||||++ +++.+.++
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI-QLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHH
Confidence 5899999999999995 77766653
No 197
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.52 E-value=0.0012 Score=56.18 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+..++|+||+||||||+. +.+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a-~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC-ARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHh
Confidence 568999999999999995 5565554
No 198
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.51 E-value=0.0012 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++|+|++||||||| ++++...
T Consensus 5 ~v~lvG~~gvGKStL-~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTI-FNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHH-HHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHhCC
Confidence 589999999999999 5777753
No 199
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.0012 Score=60.77 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHhhhhccCC-CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 15 ETVLNNHAQHHR-VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 15 e~vL~~~~qi~~-~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
|.-|+++.+.+. .+.+++|+||+||||||+. +.+.+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~iI~I~G~~GSGKST~a-~~L~~~lg 47 (252)
T 1uj2_A 8 EQTLQNHQQPNGGEPFLIGVSGGTASGKSSVC-AKIVQLLG 47 (252)
T ss_dssp -------------CCEEEEEECSTTSSHHHHH-HHHHHHTT
T ss_pred HHHHHHhhhccCCCcEEEEEECCCCCCHHHHH-HHHHHHhh
Confidence 456777777543 3457999999999999996 44545454
No 200
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.50 E-value=0.0011 Score=56.91 Aligned_cols=22 Identities=55% Similarity=0.833 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++...
T Consensus 4 kv~ivG~~gvGKStL-l~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTL-LQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHH-HHHHTCC
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 489999999999999 5777653
No 201
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.49 E-value=0.0018 Score=60.20 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.|++++|+||+|+|||||+ ..+...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~-~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLA-LQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHH
Confidence 7899999999999999996 444433
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.45 E-value=0.0014 Score=63.01 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+.++|+||+|+|||||+ +++.+.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa--~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLA--HIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHH--HHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH--HHHHHH
Confidence 4478999999999999997 666654
No 203
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.42 E-value=0.0014 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+.+++|+||+||||||++ ++++.
T Consensus 4 ~~~I~i~G~~GSGKST~~--~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA--NAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHH--HHHHH
T ss_pred ceEEEEECCCCCCHHHHH--HHHHH
Confidence 457999999999999996 66665
No 204
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.42 E-value=0.0016 Score=55.06 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..++|+|++||||||| ++++...
T Consensus 8 ~~i~lvG~~gvGKStL-~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTI-FNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHTT
T ss_pred CEEEEECCCCCCHHHH-HHHHhCC
Confidence 4589999999999999 5777763
No 205
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.40 E-value=0.00062 Score=76.08 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=30.0
Q ss_pred cchhhHHHHHh--------hhhccCCCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 9 IPRPLLETVLN--------NHAQHHRVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 9 iprp~le~vL~--------~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
...|++|..+. +.......|++++|+||||+|||||+ |++.
T Consensus 646 ~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlL--r~i~ 694 (918)
T 3thx_B 646 GRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYI--KQVA 694 (918)
T ss_dssp ECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHH--HHHH
T ss_pred ccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHH--HHHH
Confidence 45799997653 22222246899999999999999997 6665
No 206
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.39 E-value=0.0016 Score=58.11 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..++|+||+||||||+. +.+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~-~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC-ELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3467999999999999995 6666654
No 207
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.38 E-value=0.0018 Score=54.62 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..++|+||+||||||+. +.+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG-RELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHH-HHHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHh
Confidence 57999999999999996 5555544
No 208
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.37 E-value=0.0029 Score=53.53 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+.|+||+|+|||||+ +.+.+.+
T Consensus 39 ~~~ll~G~~G~GKT~l~-~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA-IALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 34999999999999995 6666654
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.36 E-value=0.0044 Score=52.52 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=29.0
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
|.++.++.........+.++.|.||+|+|||++. +.+...
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA--~~i~~~ 47 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGA--RYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHH--HHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHH--HHHHHh
Confidence 4455555555444566788999999999999997 655543
No 210
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.36 E-value=0.0018 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 5 ~i~v~G~~~~GKSsl-i~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSAL-TVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 389999999999999 58887653
No 211
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.35 E-value=0.0018 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+..++|+||+||||||+. +.+.+.+
T Consensus 2 ~~~I~l~G~~GsGKsT~a-~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIG-RRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHc
Confidence 457999999999999996 4444444
No 212
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.34 E-value=0.0014 Score=69.23 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.6
Q ss_pred CCCCeEEEEcCCCCChhhHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLL 45 (530)
..|+.++|+||||||||||+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEeeCCCCHHHHH
Confidence 47899999999999999996
No 213
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.34 E-value=0.0044 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKE 56 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~ 56 (530)
.++|+||+|+|||||+ +.+.+.+...
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhhh
Confidence 8999999999999995 6676665443
No 214
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.31 E-value=0.0019 Score=55.52 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+||+||||||+. +.+.+.+
T Consensus 6 ~i~i~G~~GsGKsTla-~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA-RALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHH-HHHHHHH
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHc
Confidence 6899999999999996 5554443
No 215
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.31 E-value=0.002 Score=64.11 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
.+++++|+||||+|||||+ .++..+..+.
T Consensus 25 ~~~~~~i~G~nG~GKstll--~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMM--DAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHH--HHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHhhhccc
Confidence 4789999999999999998 7777766555
No 216
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.30 E-value=0.0021 Score=57.69 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..++|+||+||||||+. +++.+.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a-~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS-SRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH-HHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHHc
Confidence 3468999999999999995 6665554
No 217
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.29 E-value=0.002 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 7 ~i~v~G~~~~GKssl-~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSM-IQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 379999999999999 58887653
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.28 E-value=0.0021 Score=56.63 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+||+||||||+. +.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA-EQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3789999999999995 5565654
No 219
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.28 E-value=0.0027 Score=55.66 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+..++|+||+||||||+. +.+.+.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a-~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA-VKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 35567999999999999995 5555544
No 220
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.27 E-value=0.002 Score=60.17 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++++|+||+|||||||. +.+.+.+
T Consensus 2 ~li~I~G~~GSGKSTla-~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMA-IQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEEECCCCcCHHHHH-HHHHhcC
Confidence 36899999999999996 5555544
No 221
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.26 E-value=0.0025 Score=56.39 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+||+||||||+. +++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG-ERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3789999999999995 5565654
No 222
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.26 E-value=0.0022 Score=52.33 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++++|++||||||| ++++..+-
T Consensus 3 ki~v~G~~~~GKSsl-i~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL-FNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHhCCC
Confidence 478999999999999 58888753
No 223
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.25 E-value=0.0025 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++...-
T Consensus 25 ~i~v~G~~~~GKSsl-i~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSL-LNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHH-HHHHHTSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCc
Confidence 489999999999999 58888753
No 224
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0023 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++++|++||||||| ++++..+-
T Consensus 6 i~v~G~~~~GKssl-i~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSI-VLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEECCCCCCHHHH-HHHHhcCC
Confidence 79999999999999 58887654
No 225
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.0027 Score=59.32 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=28.2
Q ss_pred hHHHHHhhhhcc--CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 13 LLETVLNNHAQH--HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 13 ~le~vL~~~~qi--~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.+....... ...+..+.|+||+|+|||||+ +.+.+.+
T Consensus 27 ~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~-~~~~~~~ 68 (387)
T 2v1u_A 27 ELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA-RLVLRRL 68 (387)
T ss_dssp HHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 445555544332 356678999999999999995 7776655
No 226
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.25 E-value=0.0021 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
++++|++||||||| ++++..+-
T Consensus 6 i~v~G~~~~GKssl-~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSAL-TIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHH-HHHHHHSS
T ss_pred EEEECCCCCCHHHH-HHHHHhCc
Confidence 89999999999999 58887653
No 227
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.25 E-value=0.0021 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 6 ki~i~G~~~vGKSsl-~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSL-ASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHH-HHHHHCC-
T ss_pred EEEEECCCCccHHHH-HHHHhcCC
Confidence 389999999999999 58887653
No 228
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.23 E-value=0.0026 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+++|.||+||||||+. +.+.+.+
T Consensus 3 ~~i~i~G~~GsGKst~~-~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVA-RRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHhc
Confidence 37999999999999996 4444434
No 229
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.23 E-value=0.0024 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++++|++||||||| ++++..+
T Consensus 6 ~i~v~G~~~~GKssl-~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSAL-TLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888765
No 230
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.22 E-value=0.0023 Score=53.03 Aligned_cols=23 Identities=48% Similarity=0.781 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 10 ~i~v~G~~~~GKSsl-i~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSL-MHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHhCc
Confidence 489999999999999 58887653
No 231
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.22 E-value=0.0024 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
...++|+||||+||||| +.+++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHhhH
Confidence 35799999999999999 588888764
No 232
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.22 E-value=0.0033 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.....++|+|++||||||| ++++..+
T Consensus 6 ~~~~~i~v~G~~~~GKssl-~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTL-LDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHH-HHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 3455689999999999999 5888764
No 233
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.21 E-value=0.0022 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+.-++|+|++||||||| ++++...
T Consensus 4 ~~ki~ivG~~g~GKStL-l~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSL-LNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHH-HHHHHTS
T ss_pred CCEEEEECCCCCCHHHH-HHHHhCC
Confidence 45689999999999999 5777754
No 234
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.21 E-value=0.0024 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 5 ki~v~G~~~~GKssl-i~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSAL-TVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHC
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 379999999999999 5888765
No 235
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.20 E-value=0.0042 Score=58.54 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=24.7
Q ss_pred HhhhhccCC-CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 18 LNNHAQHHR-VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 18 L~~~~qi~~-~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+......+. .+.++.|+||+|+|||||+ +.+.+.+
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 333433333 5678999999999999995 6665554
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.20 E-value=0.0017 Score=63.47 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGY 62 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~ 62 (530)
..+++++|+||+||||||++ .++...+ .+..+.+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~-~~LA~~l-~~~g~kV~ 136 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSC-GKLAKMF-VDEGKSVV 136 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHH-HHHHHHH-HHTTCCEE
T ss_pred CCCeEEEEEcCCCChHHHHH-HHHHHHH-HhcCCEEE
Confidence 35778999999999999996 5554444 33333433
No 237
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.19 E-value=0.0023 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
--++|+|++||||||| ++++..+
T Consensus 10 ~~i~v~G~~~~GKssl-i~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSAL-TIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHH-HHHHHHS
T ss_pred eEEEEECCCCCCHHHH-HHHHHhC
Confidence 3589999999999999 5888775
No 238
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.19 E-value=0.0023 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+|++||||||+. +.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA-KKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 5899999999999995 6666654
No 239
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0026 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++++|++||||||| ++++..+
T Consensus 5 ~i~v~G~~~~GKssl-i~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSL-VLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHH-HHHHHTC
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 379999999999999 5888764
No 240
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.16 E-value=0.003 Score=57.47 Aligned_cols=24 Identities=33% Similarity=0.726 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.+.|+||+|+|||||+ +.+.+
T Consensus 44 ~~~~vll~G~~GtGKT~la--~~la~ 67 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLA--KAIAG 67 (257)
T ss_dssp CCCEEEEECCTTSCHHHHH--HHHHH
T ss_pred CCCeEEEECcCCCCHHHHH--HHHHH
Confidence 3567999999999999996 55544
No 241
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.16 E-value=0.0026 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 8 ~i~v~G~~~~GKSsl-i~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI-MWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 389999999999999 58888764
No 242
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.0026 Score=56.14 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.|.+++|.|++|+|||||+++-+.+..........|+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 6789999999999999998776666443333346676643
No 243
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.15 E-value=0.0027 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 9 ~i~v~G~~~~GKSsl-i~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSL-MNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58887653
No 244
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.15 E-value=0.0026 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 8 ~i~v~G~~~~GKssl-i~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSL-VLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHC
T ss_pred EEEEECcCCCCHHHH-HHHHHcC
Confidence 489999999999999 5888765
No 245
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.13 E-value=0.0025 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 5 ~i~v~G~~~~GKssl-i~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCL-LVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHC
T ss_pred EEEEECcCCCCHHHH-HHHHHhC
Confidence 379999999999999 5888764
No 246
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.13 E-value=0.0063 Score=56.01 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=32.5
Q ss_pred ccccchhh-HHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 6 WKIIPRPL-LETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 6 w~iiprp~-le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
...+.|.= ++.+.+.... ++.++|+||+|+||||| ++.+.+.. +..|++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~----~~~v~i~G~~G~GKT~L-l~~~~~~~-----~~~~~~~ 62 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN----YPLTLLLGIRRVGKSSL-LRAFLNER-----PGILIDC 62 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH----CSEEEEECCTTSSHHHH-HHHHHHHS-----SEEEEEH
T ss_pred HhcCChHHHHHHHHHHHhc----CCeEEEECCCcCCHHHH-HHHHHHHc-----CcEEEEe
Confidence 34455543 4444443332 37999999999999999 57777764 2555553
No 247
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.09 E-value=0.0094 Score=62.85 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=46.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh-cCCCCCceEEEEEeccccCCCCCCCCCCccch---hccCCCCChhhHHHHHHHHH
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD-LNKEPHLTGYVDFAESIKDHHPQHNQSFPWSS---WSNCEPPTLSNCKAQLETCL 104 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~-l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPHts---veNValp~~~d~r~r~e~aL 104 (530)
.-+.|.|++|+||||++ +.++.. +.....+.+.+.+- +.+...++.++.+||+. ++| .+++.+.++.+.
T Consensus 168 pHlLIaG~TGSGKSt~L-~~li~sLl~~~~p~~v~l~li-DpK~~el~~~~~lPhl~~~Vvtd-----~~~a~~~L~~~~ 240 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV-NAMILSMLYKAQPEDVRFIMI-DPKMLELSVYEGIPHLLTEVVTD-----MKDAANALRWCV 240 (512)
T ss_dssp CSEEEECCTTSSHHHHH-HHHHHHHHTTCCTTTEEEEEE-CCSSSGGGGGTTCTTBSSSCBCS-----HHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHhCCCceEEEEEE-CCchhhhhhhccCCcccceeecC-----HHHHHHHHHHHH
Confidence 45799999999999995 665543 23333234444422 33323478888899952 233 234455556666
Q ss_pred HHHHHHhHHh
Q 043574 105 ESMAERGIKL 114 (530)
Q Consensus 105 E~~a~~~v~~ 114 (530)
+.|-++.-.+
T Consensus 241 ~EmerR~~ll 250 (512)
T 2ius_A 241 NEMERRYKLM 250 (512)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665333
No 248
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.09 E-value=0.0029 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++...
T Consensus 9 ki~v~G~~~~GKSsl-i~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSI-VLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888875
No 249
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.09 E-value=0.003 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 8 ~i~v~G~~~~GKssl-i~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSL-VLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 479999999999999 5888864
No 250
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.09 E-value=0.003 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 13 ki~v~G~~~~GKSsl-i~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSV-LYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58888643
No 251
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.09 E-value=0.0086 Score=54.69 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=27.5
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
|.+..++.........+.++.|+||+|+||||++ +.+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la-~~i~~~~~ 54 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIA-SRLHYLSS 54 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHH-HHHHHTST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-HHHHHhcC
Confidence 4444555443333345678999999999999996 54444433
No 252
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.07 E-value=0.0031 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++|+|++||||||| ++++..+
T Consensus 3 i~~~G~~~~GKssl-~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTI-LYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHH-HHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHcC
Confidence 78999999999999 5888754
No 253
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0043 Score=57.87 Aligned_cols=48 Identities=25% Similarity=0.458 Sum_probs=28.6
Q ss_pred CCcccccchh-----------hHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 3 NKAWKIIPRP-----------LLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 3 ~k~w~iiprp-----------~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+.+|-.-.|| .++.+...... ... ..+.|+||+|+||||++ +.+.+.+
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-~~~-~~~ll~G~~G~GKT~la-~~la~~l 82 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-ANL-PHMLFYGPPGTGKTSTI-LALTKEL 82 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-TTC-CCEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-CCC-CEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3467666666 34444444332 111 23899999999999995 5554443
No 254
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.06 E-value=0.0011 Score=74.23 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=28.5
Q ss_pred chhhHHH------HHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHH
Q 043574 10 PRPLLET------VLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLL 50 (530)
Q Consensus 10 prp~le~------vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl 50 (530)
..|++|. |+|+.......|++++|+||||+|||||+ |++
T Consensus 638 rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlL--r~i 682 (934)
T 3thx_A 638 RHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYI--RQT 682 (934)
T ss_dssp CCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHH--HHH
T ss_pred ccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHH--HHH
Confidence 5688874 33333333346899999999999999997 666
No 255
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.06 E-value=0.0032 Score=51.86 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
--++|+|++||||||| ++++..+-
T Consensus 8 ~~i~v~G~~~~GKssl-~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTI-LYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHHSS
T ss_pred cEEEEECCCCCCHHHH-HHHHhcCC
Confidence 3589999999999999 58887643
No 256
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.03 E-value=0.0032 Score=51.94 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhhHHHHHHHh
Q 043574 31 LIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~ 51 (530)
++|+|++||||||| ++++..
T Consensus 5 i~ivG~~~~GKSsl-i~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTL-AGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHH-HHHHHC
T ss_pred EEEECCCCCCHHHH-HHHHHh
Confidence 79999999999999 577764
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.02 E-value=0.003 Score=58.61 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+.+++|+||+||||||+. +++.+.
T Consensus 2 ~~~I~l~G~~GsGKST~a-~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWA-REFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHh
Confidence 467999999999999995 555553
No 258
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.01 E-value=0.0034 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=21.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
...--++|+|++||||||| ++++..+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL-~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTL-LKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHH-HHHHCCS
T ss_pred CCceEEEEECCCCCCHHHH-HHHHhcC
Confidence 3444699999999999999 5887765
No 259
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.00 E-value=0.0038 Score=61.35 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
.+..++|+||+||||||| ++++...+. +..+.+.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTL-ln~L~~~~~-~~~~~v~V~ 108 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTF-IEYFGKMLT-ERGHKLSVL 108 (349)
T ss_dssp SCEEEEEECCTTSSHHHH-HHHHHHHHH-HTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHH-HHHHHHHhh-hcCCeEEEE
Confidence 366899999999999999 577776432 223444443
No 260
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.00 E-value=0.0025 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++....
T Consensus 4 ki~~vG~~~~GKSsl-i~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSAL-ARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHH-HHHHCCC-
T ss_pred EEEEECCCCCCHHHH-HHHHcCcc
Confidence 379999999999999 57776543
No 261
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.00 E-value=0.0038 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 8 ki~v~G~~~~GKssl-~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSL-TTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHH-HHHHHGG
T ss_pred EEEEECcCCCCHHHH-HHHHHhC
Confidence 389999999999999 5888765
No 262
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.99 E-value=0.0027 Score=60.96 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=17.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+.+++|+|||||||||+. +.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva-~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVK-HTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHH-HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3467999999999999995 5555544
No 263
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.98 E-value=0.0028 Score=52.47 Aligned_cols=22 Identities=45% Similarity=0.756 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 11 ~i~v~G~~~~GKssl-~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSL-LLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHH-HHHHCSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 489999999999999 5887754
No 264
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.98 E-value=0.0035 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 6 ki~v~G~~~~GKSsl-i~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSAL-TIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHHhCC
Confidence 379999999999999 58887653
No 265
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.97 E-value=0.0034 Score=51.89 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 16 ~i~v~G~~~~GKssl-i~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSL-ITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 489999999999999 5888754
No 266
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.96 E-value=0.0031 Score=52.94 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++|+|++||||||| ++++...
T Consensus 4 i~v~G~~~~GKSsl-i~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTL-IYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHH-HHHHHSC
T ss_pred EEEECCCCCCHHHH-HHHHhCc
Confidence 78999999999999 5888765
No 267
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.95 E-value=0.0036 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| +++++.+-
T Consensus 22 ki~ivG~~~vGKSsL-~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSAL-VHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58888764
No 268
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.94 E-value=0.005 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..-++|+|++||||||| ++++..+
T Consensus 23 ~~~i~v~G~~~~GKSsl-i~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSF-INSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHH-HHHHHTC
T ss_pred CCEEEEECCCCCCHHHH-HHHHhCC
Confidence 34589999999999999 5888765
No 269
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0041 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.+..++|+||+||||||+. +++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~--~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA--KIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH--HHHHH
T ss_pred CCcEEEEECCCCCCHHHHH--HHHHH
Confidence 6678999999999999996 55543
No 270
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.94 E-value=0.0053 Score=64.18 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
.++.+.|+||+|+|||||+ +++.++..+.
T Consensus 59 ~g~~vll~Gp~GtGKTtla--r~ia~~l~~~ 87 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLG--QAMAELLPTE 87 (604)
T ss_dssp TTCCEEEECCTTSSHHHHH--HHHHHTSCCS
T ss_pred CCCEEEEEeCCCCCHHHHH--HHHhccCCcc
Confidence 5689999999999999997 7777665554
No 271
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.94 E-value=0.0042 Score=57.36 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.+.|+||+|+||||++ +.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la-~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA-RAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH-HHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 5678999999999999996 444443
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.92 E-value=0.0071 Score=54.19 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.+.|+||+|+||||++ +.+.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la-~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA-KAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH-HHHHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHh
Confidence 4567999999999999996 5554443
No 273
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.92 E-value=0.0082 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+.++|+||+|+||||| ++.+.+...
T Consensus 31 ~~v~i~G~~G~GKT~L-~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI-IKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHT
T ss_pred CcEEEECCCCCCHHHH-HHHHHHhcC
Confidence 6999999999999999 577777653
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.91 E-value=0.0044 Score=55.23 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..++|+||+||||||+. +.+.+.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a-~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA-PNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHc
Confidence 4568999999999999995 5565544
No 275
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.91 E-value=0.0026 Score=61.51 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+++++|+||+|+||||++ .++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~-~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTL-AKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHH
Confidence 36789999999999999995 5554443
No 276
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.91 E-value=0.004 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 20 ki~v~G~~~~GKSsl-i~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSAL-TLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHhhC
Confidence 489999999999999 5888764
No 277
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.91 E-value=0.0039 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=18.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+|++||||||+. +.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG-SLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999996 5555544
No 278
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.91 E-value=0.0032 Score=55.09 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
-++|+|++||||||| ++++..
T Consensus 27 ki~lvG~~~vGKSsL-i~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTL-LHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHH-HHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhc
Confidence 589999999999999 587765
No 279
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.90 E-value=0.0041 Score=51.39 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 17 ~i~v~G~~~~GKSsl-i~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCL-LHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58887653
No 280
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.0042 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 12 ~i~v~G~~~~GKssl-i~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCL-LVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHhCC
Confidence 489999999999999 58887654
No 281
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.87 E-value=0.0042 Score=53.00 Aligned_cols=23 Identities=39% Similarity=0.715 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 27 ki~v~G~~~~GKSsL-i~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNL-LSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887653
No 282
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.85 E-value=0.0044 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 7 ~i~~~G~~~~GKssl-~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCL-LISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 379999999999999 5888754
No 283
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.84 E-value=0.0048 Score=61.87 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+++++|+||+||||||+. +++.+.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla-~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFI-QEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHH-HHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHH-HHHHHhc
Confidence 35678999999999999995 6666643
No 284
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.84 E-value=0.0019 Score=72.84 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEeccccCCCCCCCCCCcc-chhccC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIKDHHPQHNQSFPW-SSWSNC 88 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig~mvfQ~~nLFPH-tsveNV 88 (530)
|++++|+||||+|||||+ |++ ++..+ ..+++.++||+.. + ++++||
T Consensus 789 g~i~~ItGpNgsGKSTlL--r~i-Gl~~~---------~aqiG~~Vpq~~~---~l~v~d~I 835 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLM--RQA-GLLAV---------MAQMGCYVPAEVC---RLTPIDRV 835 (1022)
T ss_dssp CCEEEEECCTTSSHHHHH--HHH-HHHHH---------HHTTTCCEESSEE---EECCCSBE
T ss_pred CcEEEEECCCCCChHHHH--HHH-HHHHH---------HhheeEEeccCcC---CCCHHHHH
Confidence 799999999999999997 777 55331 2355557788642 3 344666
No 285
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.83 E-value=0.0041 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 12 ki~v~G~~~~GKSsl-i~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCL-LHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58887653
No 286
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.83 E-value=0.0041 Score=58.85 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=23.8
Q ss_pred hhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 21 HAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 21 ~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
+......|.+++|.||+||||||+ ++++.+.+..
T Consensus 20 ~~~~~~~~~~i~~eG~~GsGKsT~-~~~l~~~l~~ 53 (236)
T 3lv8_A 20 FQSNAMNAKFIVIEGLEGAGKSTA-IQVVVETLQQ 53 (236)
T ss_dssp ------CCCEEEEEESTTSCHHHH-HHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 444455788999999999999999 5777776643
No 287
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.83 E-value=0.0044 Score=51.64 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 14 ki~v~G~~~~GKSsl-i~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSL-VLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHC
T ss_pred EEEEECcCCCCHHHH-HHHHHcC
Confidence 489999999999999 5888765
No 288
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.82 E-value=0.0071 Score=53.00 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
....++|+|++||||||| ++++...+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl-~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLL-IERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHH-HHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHH-HHHHHHHhc
Confidence 345799999999999999 588888753
No 289
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.82 E-value=0.0048 Score=61.96 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=23.0
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..++.+++|+||+|||||||. .++.+.+
T Consensus 7 ~~~~~~i~i~GptgsGKt~la-~~La~~~ 34 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALA-IELRKIL 34 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHH-HHHHHHS
T ss_pred CCCCcEEEEECCCccCHHHHH-HHHHHhC
Confidence 345678999999999999995 7777765
No 290
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.81 E-value=0.0064 Score=61.89 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=29.2
Q ss_pred hhHHHHHhhhhccCCCCCe--EEEEcCCCCChhhHHHHHHHhh
Q 043574 12 PLLETVLNNHAQHHRVPQP--LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~--lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-+.+.++......-..++. ++|+||+|+||||+. +++.+
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~--~~la~ 46 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIA--EELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHH--HHHHH
Confidence 3677788887655455666 999999999999996 54443
No 291
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.80 E-value=0.0047 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 20 ki~v~G~~~~GKSsl-~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSAL-TIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 479999999999999 5888865
No 292
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.80 E-value=0.0032 Score=61.72 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+++++|+||+|+||||++ .++...+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~-~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSL-AKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence 35778999999999999995 5554444
No 293
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.79 E-value=0.0086 Score=52.63 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
....++|+|++||||||| ++++.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl-~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLL-IEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHH-HHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHhc
Confidence 346789999999999999 588887753
No 294
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.79 E-value=0.0046 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 32 ki~vvG~~~~GKSsL-i~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCL-LISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888754
No 295
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.78 E-value=0.0047 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 16 ki~v~G~~~~GKSsl-i~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSAL-TLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888754
No 296
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.78 E-value=0.0047 Score=53.88 Aligned_cols=24 Identities=46% Similarity=0.697 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.-++|+||+|+||||| ++++....
T Consensus 13 ~~i~~~G~~g~GKTsl-~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL-LTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHSS
T ss_pred CEEEEECCCCCCHHHH-HHHHhcCC
Confidence 4589999999999999 58887754
No 297
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.78 E-value=0.0065 Score=63.18 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEP 57 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~ 57 (530)
.++.++|+||+|+|||||+ +++.+...++
T Consensus 107 ~g~~vll~Gp~GtGKTtla--r~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA--KSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH--HHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHHhcCCC
Confidence 6889999999999999997 6666654443
No 298
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.77 E-value=0.0045 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 8 ki~~~G~~~~GKSsl-i~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSL-TIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCCCHHHH-HHHHHcC
Confidence 489999999999999 5888844
No 299
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.77 E-value=0.0072 Score=58.84 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 16 TVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 16 ~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+++++.......+..++|+||+|+|||||+ +.+...+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~-~~l~~~~ 80 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFL-EAFGMLL 80 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHH-HHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHH-HHHHHHH
Confidence 344443333457789999999999999994 6666544
No 300
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.76 E-value=0.0056 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.+++.+++||.|+||||++++.+.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999997555544
No 301
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.75 E-value=0.0051 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 10 ki~v~G~~~~GKssl-~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCL-LISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 489999999999999 5888765
No 302
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.75 E-value=0.005 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++++|++||||||| ++++..+-
T Consensus 23 ki~vvG~~~~GKSsl-i~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSAL-TIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSS
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58887653
No 303
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.75 E-value=0.0054 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcCCC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLNKE 56 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~~~ 56 (530)
-++|+|++|||||||+ +.+...+...
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHH-HHHHhhcccc
Confidence 4899999999999995 7777666543
No 304
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.74 E-value=0.0047 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERL 49 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rL 49 (530)
.+.+.+|+||+|+||||++ .-+
T Consensus 22 ~~g~~~I~G~NGsGKStil-~Ai 43 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLL-DAI 43 (149)
T ss_dssp CSEEEEEECCTTSSHHHHH-HHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHH
Confidence 3568999999999999995 444
No 305
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.74 E-value=0.0051 Score=52.09 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 18 ki~v~G~~~~GKSsl-i~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCL-LLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58888653
No 306
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.74 E-value=0.0049 Score=58.53 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.+..++|.|||||||||+. +.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla-~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVS-RGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 3467999999999999996 444443
No 307
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.74 E-value=0.0047 Score=58.58 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.+.+++|+||+||||||+. +.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva--~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVA--QRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHH--HHHHH
T ss_pred CCEEEEEECCCCCCHHHHH--HHHHH
Confidence 4457999999999999996 55554
No 308
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.74 E-value=0.0048 Score=55.67 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++...-
T Consensus 31 ~i~lvG~~g~GKStl-in~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSAT-GNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHH-HHHHHTSC
T ss_pred EEEEECCCCCCHHHH-HHHHcCCC
Confidence 489999999999999 57777643
No 309
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.72 E-value=0.008 Score=56.85 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=23.9
Q ss_pred hhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 21 HAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 21 ~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.......++.+.|+||+|+|||||+ +.+.+.+.
T Consensus 63 ~~~~~~~~~~vLl~GppGtGKT~la-~~la~~l~ 95 (368)
T 3uk6_A 63 IREGKIAGRAVLIAGQPGTGKTAIA-MGMAQALG 95 (368)
T ss_dssp HHTTCCTTCEEEEEESTTSSHHHHH-HHHHHHHC
T ss_pred HHcCCCCCCEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 3333334678999999999999995 65655553
No 310
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.70 E-value=0.0041 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 9 ki~~vG~~~vGKTsl-i~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSL-IHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 389999999999999 5888765
No 311
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.70 E-value=0.0033 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
..--++|+|++||||||| ++++..
T Consensus 17 ~~~~i~v~G~~~~GKssl-i~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTI-LYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHH-HHHTCC
T ss_pred CccEEEEECCCCCCHHHH-HHHHhc
Confidence 345699999999999999 577764
No 312
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.69 E-value=0.005 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 9 ki~v~G~~~vGKSsl-i~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTAL-LHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 479999999999999 5888765
No 313
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.67 E-value=0.0051 Score=57.17 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+.+++|+|++||||||+. +.+.+.+
T Consensus 4 ~~lIvl~G~pGSGKSTla-~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS-KNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH-HHHHHHH
Confidence 467999999999999995 6665543
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.67 E-value=0.012 Score=57.42 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.....++|+|+.|+||||| ++++...+.........++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl-~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTA-IEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHH-HHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHH-HHHHHHHHHhCCCceEEEecC
Confidence 3456799999999999999 588877664333334555544
No 315
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.67 E-value=0.004 Score=59.35 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+.|+||+|+||||++ +.+...
T Consensus 49 ~ll~Gp~G~GKTtla-~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI-VALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 999999999999996 444443
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.66 E-value=0.0058 Score=51.93 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-+.++|+|++||||||+. +.+-+.+
T Consensus 7 ~~~i~l~G~~GsGKSTva-~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLA-QELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHH-HHHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHh
Confidence 378999999999999996 4444434
No 317
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0059 Score=51.49 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 17 ~i~v~G~~~~GKssl-i~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSL-LLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58887653
No 318
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.64 E-value=0.0058 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++...-
T Consensus 10 ki~v~G~~~~GKSsl-i~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSL-MNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58887653
No 319
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.64 E-value=0.0059 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 24 ki~vvG~~~~GKSsl-i~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSF-LFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 489999999999999 58887653
No 320
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.63 E-value=0.0052 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
--++|+|++||||||| ++++..+-
T Consensus 19 ~~i~v~G~~~~GKssl-~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTI-LKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHH-HHHHTTCC
T ss_pred eEEEEECCCCCCHHHH-HHHHhcCC
Confidence 4589999999999999 58887654
No 321
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.63 E-value=0.0058 Score=52.52 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 10 ki~v~G~~~~GKSsl-i~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSF-LFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHH-HHHHHTCC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887653
No 322
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.63 E-value=0.0039 Score=60.05 Aligned_cols=33 Identities=24% Similarity=0.105 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTG 61 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg 61 (530)
.+++++++||+|+||||++ +.+.++.....+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~--~~la~~~~~~~~~v 129 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA--AKLALYYKGKGRRP 129 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH--HHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHH--HHHHHHHHHcCCeE
Confidence 5788999999999999996 55555444343333
No 323
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.62 E-value=0.0067 Score=55.50 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..+..+.|+||+|+|||||+ +.+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la-~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA-KAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH-HHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH-HHHHHH
Confidence 45678999999999999996 555444
No 324
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.61 E-value=0.006 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 22 ki~v~G~~~~GKSsl-i~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCL-TYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 489999999999999 5888754
No 325
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.59 E-value=0.0056 Score=53.03 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
--++|+|++||||||| ++++..+
T Consensus 24 ~ki~~vG~~~vGKSsl-i~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTL-LHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHH-HHHHHHS
T ss_pred cEEEEECCCCCCHHHH-HHHHhcC
Confidence 4689999999999999 5888764
No 326
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.59 E-value=0.0062 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 23 ki~v~G~~~~GKSsl-i~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCL-LLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887653
No 327
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.58 E-value=0.0068 Score=57.36 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=20.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..++.+.|+||+|+|||||+ +.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la--~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA--KAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH--HHHHH
T ss_pred CCCceEEEECCCCcCHHHHH--HHHHH
Confidence 45678999999999999996 55554
No 328
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.58 E-value=0.007 Score=56.07 Aligned_cols=27 Identities=37% Similarity=0.641 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+..+.|+||+|+|||||+ +.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la-~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA-HVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH-HHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHHh
Confidence 45578999999999999996 5555543
No 329
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.57 E-value=0.0088 Score=55.22 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=20.9
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+..+..+.|+||+|+||||++ +.+.+.+
T Consensus 64 ~~~~~~vll~G~~GtGKT~la-~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVA-LKMAGLL 91 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 345567999999999999995 5444443
No 330
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.56 E-value=0.0052 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.-++|+|++||||||| ++++..+-
T Consensus 18 ~ki~v~G~~~~GKSsl-~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTI-INQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHH-HHHHSCCC
T ss_pred cEEEEECCCCCCHHHH-HHHHhcCC
Confidence 3589999999999999 58887653
No 331
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.56 E-value=0.0066 Score=60.60 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
++.+++|+||+|||||||. ..+.+.++ ..+|+.+
T Consensus 4 m~~~i~i~GptGsGKTtla-~~La~~l~-----~~iis~D 37 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLA-MALADALP-----CELISVD 37 (323)
T ss_dssp CCEEEEEECCTTSCHHHHH-HHHHHHSC-----EEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHcC-----CcEEecc
Confidence 4468999999999999996 66666542 4556655
No 332
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.56 E-value=0.012 Score=57.51 Aligned_cols=40 Identities=18% Similarity=0.021 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh-cCC----CCCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD-LNK----EPHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~-l~~----~~~Gtg~Idl~ 66 (530)
.|+++.|+||+|+|||||+++-+.+. .+. ...+.+||+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 67899999999999999974444432 221 13346676643
No 333
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.55 E-value=0.0065 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 23 ki~vvG~~~vGKTsL-i~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSAL-TVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCcHHHH-HHHHHhCC
Confidence 489999999999999 58887653
No 334
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.55 E-value=0.0047 Score=52.39 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=26.6
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+.++.+..........+.++.|+||+|+|||++. +.+..
T Consensus 11 ~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA--~~i~~ 49 (143)
T 3co5_A 11 AAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVA--RYFHK 49 (143)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHH--GGGCC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHH--HHHHH
Confidence 3444444444333345678999999999999997 55554
No 335
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.54 E-value=0.0065 Score=61.19 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+.+++|+||||||||||. .++.+.+
T Consensus 3 ~~~i~i~GptgsGKt~la-~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS-VMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHTT
T ss_pred CcEEEEECCCcCCHHHHH-HHHHHhC
Confidence 468999999999999995 7777765
No 336
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.54 E-value=0.01 Score=56.34 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=26.1
Q ss_pred hHHHHHhhhhccC--CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 13 LLETVLNNHAQHH--RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 13 ~le~vL~~~~qi~--~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+...++.++...+ ..++.+.|+||+|+|||+|. +.+.+.+
T Consensus 19 ~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la-~aiA~~l 60 (293)
T 3t15_A 19 LVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC-ELVFRKM 60 (293)
T ss_dssp HHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3344445554433 34567888999999999996 5555544
No 337
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0062 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 10 ki~vvG~~~~GKSsl-i~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSL-VLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCcHHHH-HHHHHcC
Confidence 489999999999999 5888764
No 338
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0061 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 25 ki~vvG~~~~GKSsl-i~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSI-VCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887653
No 339
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0065 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.--++|+|++||||||| ++++..+
T Consensus 16 ~~~i~v~G~~~~GKssl-~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTI-LYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHH-HHHHHTT
T ss_pred ccEEEEECCCCCCHHHH-HHHHhcC
Confidence 34589999999999999 5888854
No 340
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.52 E-value=0.0071 Score=54.91 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
|..++|.|+.||||||++ +.+.+.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~-~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV-KLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHH-HHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHH-HHHHHHcC
Confidence 568999999999999994 77777664
No 341
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0064 Score=52.10 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 25 ki~v~G~~~~GKSsl-i~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSF-LFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHT
T ss_pred EEEEECCCCcCHHHH-HHHHhcCC
Confidence 489999999999999 58888754
No 342
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0068 Score=52.13 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 30 ki~v~G~~~vGKSsl-i~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSAL-VVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888765
No 343
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.51 E-value=0.0064 Score=56.20 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
.|.+++|.||+||||||+ ++++.+.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~-~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTN-RDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHH-HHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHH-HHHHHHHHHH
Confidence 578999999999999999 5777777654
No 344
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.50 E-value=0.0069 Score=52.66 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.-++|+|++||||||| ++++..+-
T Consensus 8 ~ki~vvG~~~~GKTsl-i~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLL-FVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHSC
T ss_pred CEEEEECCCCCCHHHH-HHHHhCCC
Confidence 4589999999999999 58887653
No 345
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.49 E-value=0.0044 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..++|+|++||||||| ++++...
T Consensus 30 ~~i~v~G~~~~GKSsl-in~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTA-INVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHH-HHHHTTC
T ss_pred CEEEEEcCCCCCHHHH-HHHHhCC
Confidence 3589999999999999 5888775
No 346
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.49 E-value=0.0054 Score=53.66 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 043574 30 PLIIHGPRGVGKTTLFLERLL 50 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl 50 (530)
-++|+|++||||||| ++++.
T Consensus 25 ki~vvG~~~vGKSsL-i~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTL-AGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHH-HHHTC
T ss_pred EEEEECCCCCCHHHH-HHHHH
Confidence 489999999999999 57775
No 347
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.49 E-value=0.014 Score=54.87 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
......+.|+||+|+|||||+ +.+.+.
T Consensus 52 ~~~~~~vll~G~~GtGKT~la-~~ia~~ 78 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLA-NIISYE 78 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 345567999999999999996 555444
No 348
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.48 E-value=0.0071 Score=51.77 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 25 ki~~vG~~~~GKSsl-~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCL-LLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887753
No 349
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.48 E-value=0.013 Score=56.42 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCC------CCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKE------PHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~------~~Gtg~Idl~ 66 (530)
.|+++.|.||+|+|||||++ .+......+ ..+.+||+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~-~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCH-QLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHH-HHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHhHHHH-HHHHHHhcccccCCCCCeEEEEECC
Confidence 57899999999999999974 444333222 3456777643
No 350
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.48 E-value=0.0072 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 24 ki~v~G~~~~GKSsl-i~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTF-VNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 489999999999999 5888864
No 351
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.47 E-value=0.0059 Score=62.66 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..|++++|.||+|+|||||+ +.+.+.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl--~~l~g~ 304 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLV--SRFVEN 304 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHH--HHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHH--HHHHHH
Confidence 47899999999999999997 444444
No 352
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.44 E-value=0.0074 Score=51.90 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++...
T Consensus 22 ~i~v~G~~~~GKSsl-i~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCL-LVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHC
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888754
No 353
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.44 E-value=0.0069 Score=52.36 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 10 ki~v~G~~~~GKSsl-i~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCL-LLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887643
No 354
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.43 E-value=0.0064 Score=57.22 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=20.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..|.+++|.||+||||||+ ++++.+.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~-~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTH-LQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHH-HHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3678999999999999999 577777664
No 355
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.43 E-value=0.0069 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+||+||||||+. +++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a-~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG-NLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999995 6666655
No 356
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.43 E-value=0.0081 Score=60.61 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=43.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe-c------ccc--CCCCCCCCCCccchhccCCC----CC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA-E------SIK--DHHPQHNQSFPWSSWSNCEP----PT 92 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~-~------~Ig--~mvfQ~~nLFPHtsveNVal----p~ 92 (530)
.++.+++|+||+|||||||. ..|.+.++ .-.|+.+ . +|+ ...+.+-.--||--++-+.+ -+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa-~~LA~~l~-----~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s 111 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLS-IDLAAHFP-----LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELT 111 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHH-HHHHTTSC-----EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCC
T ss_pred cCCceEEEECCCCCCHHHHH-HHHHHHCC-----CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccC
Confidence 45678999999999999996 56666542 3346644 2 122 12234444456633322222 11
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 043574 93 LSNCKAQLETCLESMAER 110 (530)
Q Consensus 93 ~~d~r~r~e~aLE~~a~~ 110 (530)
..+-++.+.++++.+..+
T Consensus 112 ~~~F~~~a~~~i~~i~~~ 129 (339)
T 3a8t_A 112 PADFRSLAGKAVSEITGR 129 (339)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455566666655433
No 357
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.0077 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 30 ki~v~G~~~~GKSsl-i~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSF-LMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHC
T ss_pred EEEEECcCCCCHHHH-HHHHHhC
Confidence 589999999999999 5888765
No 358
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.41 E-value=0.0076 Score=60.61 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.+++|+||||||||||. .++...++
T Consensus 8 ~lI~I~GptgSGKTtla-~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS-IEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHHTT
T ss_pred ceEEEECCCcCcHHHHH-HHHHHHcC
Confidence 58999999999999995 67776653
No 359
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.41 E-value=0.0076 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 22 ki~~~G~~~~GKssl-~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSL-VVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHH-HHHHHC-
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888754
No 360
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.40 E-value=0.0072 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 26 ki~vvG~~~~GKSsl-i~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSL-AHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCcCHHHH-HHHHHhCC
Confidence 489999999999999 58888754
No 361
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.40 E-value=0.011 Score=55.86 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..++.+.|+||+|+|||||+ +.+.+.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 34568999999999999995 6666654
No 362
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.40 E-value=0.0077 Score=52.13 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
-++|+|++||||||| ++++.+.+.
T Consensus 22 ki~~vG~~~vGKTsL-i~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSI-QKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHH-HHHHHSCCC
T ss_pred EEEEECCCCCCHHHH-HHHHHhcCC
Confidence 589999999999999 588877654
No 363
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.39 E-value=0.0066 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|+||+||||||+. +.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA-QFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3799999999999995 6666655
No 364
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.39 E-value=0.0066 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 23 ~i~v~G~~~~GKSsl-i~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTI-LYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHH-HHHHHTT
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 589999999999999 5888764
No 365
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.39 E-value=0.0071 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 27 ki~v~G~~~~GKSsL-i~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCL-LHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHH-HHHHHC-
T ss_pred EEEEECcCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888754
No 366
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.39 E-value=0.011 Score=60.03 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
...+..++|+||+|||||||+ +.+..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~-n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFF-RAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHH-HHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH-HHHHC
Confidence 346788999999999999995 66655
No 367
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0098 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+.
T Consensus 28 ki~lvG~~~vGKSsL-i~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCL-VRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSS
T ss_pred EEEEECcCCCCHHHH-HHHHHhCC
Confidence 489999999999999 58887654
No 368
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.37 E-value=0.0049 Score=51.79 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=9.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 10 ki~v~G~~~~GKssl-~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCV-LFRFSED 31 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5877754
No 369
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.36 E-value=0.007 Score=59.82 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCChhhHH
Q 043574 28 PQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLL 45 (530)
..+++|+||+|+|||||+
T Consensus 23 ~g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLF 40 (365)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 348999999999999996
No 370
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.36 E-value=0.015 Score=53.60 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+.|+||+|+||||++ +.+...
T Consensus 48 ~~~ll~G~~GtGKt~la--~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA--KTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHH--HHHHHH
T ss_pred eEEEEECCCCcCHHHHH--HHHHHH
Confidence 47999999999999996 555443
No 371
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.35 E-value=0.0084 Score=52.34 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
-++|+|++||||||| ++++..
T Consensus 8 kv~lvG~~~vGKSsL-~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTL-ANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHhc
Confidence 389999999999999 588875
No 372
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.29 E-value=0.0086 Score=56.13 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..++++++|+||.||||||.. +++.+.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa-~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQC-EKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHH-HHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHHHH
Confidence 356778999999999999996 6666654
No 373
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.29 E-value=0.01 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
--++|+|++||||||| ++++..+
T Consensus 30 ~ki~v~G~~~vGKSsL-i~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTI-LYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHH-HHHHCSS
T ss_pred cEEEEECCCCCCHHHH-HHHHHhC
Confidence 3599999999999999 5777653
No 374
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.28 E-value=0.0087 Score=52.12 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++...
T Consensus 27 ki~vvG~~~~GKSsL-i~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTF-LYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHH-HHHHHCS
T ss_pred EEEEECcCCCCHHHH-HHHHhcC
Confidence 489999999999999 5888764
No 375
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.27 E-value=0.0074 Score=52.07 Aligned_cols=21 Identities=62% Similarity=1.017 Sum_probs=18.0
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++|+|++||||||| ++++..+
T Consensus 29 i~vvG~~~~GKSsL-i~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSL-MERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHH-HHHHCC-
T ss_pred EEEECCCCCCHHHH-HHHHhcC
Confidence 89999999999999 5887754
No 376
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.27 E-value=0.029 Score=58.10 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.+++|+||||||||||. .++.+.++
T Consensus 3 ~~i~i~GptgsGKttla-~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS-IQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHH-HHHHHHHT
T ss_pred cEEEEECcchhhHHHHH-HHHHHHCC
Confidence 47899999999999995 77777764
No 377
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.27 E-value=0.0096 Score=55.67 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
.|.++++.||+||||||+ ++.+.+.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~-~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ-CNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHH-HHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHhcc
Confidence 588999999999999999 5888887765
No 378
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.26 E-value=0.014 Score=54.79 Aligned_cols=28 Identities=39% Similarity=0.648 Sum_probs=21.6
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
...+..+.|+||+|+||||++ +.+.+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la-~~la~~l 62 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIA-RLLAKGL 62 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHH-HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 445567899999999999995 6665554
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.26 E-value=0.011 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..++|+||.||||||+. +.+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a-~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA-PKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4567999999999999995 6665554
No 380
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.25 E-value=0.011 Score=54.81 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-.++++|++|+||||| +++++..-
T Consensus 40 ~~I~vvG~~g~GKSSL-in~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSST-VNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHH-HHHHHTSC
T ss_pred eEEEEECCCCCCHHHH-HHHHhCCC
Confidence 3589999999999999 58888653
No 381
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.24 E-value=0.017 Score=55.78 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC-CCCCceEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN-KEPHLTGYVD 64 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~-~~~~Gtg~Id 64 (530)
.++.+.|+||+|+|||+|+ +.+.+.+. .......++.
T Consensus 151 ~~~~lll~G~~GtGKT~La-~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLL-AAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp SCCEEEEECSTTSSHHHHH-HHHHHHHHHHSCCCEEEEE
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEE
Confidence 3689999999999999995 55555443 2222344555
No 382
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.0089 Score=51.01 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 20 ki~v~G~~~~GKssl-i~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCL-LMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 489999999999999 5888865
No 383
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.22 E-value=0.0093 Score=55.33 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
.|.++++.||+||||||+ ++++.+.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~-~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTA-RNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHH-HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 478999999999999999 5777777654
No 384
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.22 E-value=0.0064 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 23 ki~v~G~~~~GKSsl-i~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTI-INKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHH-HHHTSCGG
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 589999999999999 58887664
No 385
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.20 E-value=0.0088 Score=60.13 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
.|+++.|.||+|+|||||+ ..+............||+.
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEec
Confidence 5789999999999999996 4444433222223567763
No 386
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.20 E-value=0.0094 Score=57.21 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.+.+.+|+||+|+|||||+ ..+..
T Consensus 23 ~~g~~~i~G~NGsGKS~ll--~ai~~ 46 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNII--DAIKW 46 (322)
T ss_dssp CSSEEEEECCTTTCSTHHH--HHHHH
T ss_pred CCCcEEEECCCCCcHHHHH--HHHHH
Confidence 3449999999999999997 66653
No 387
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.20 E-value=0.012 Score=59.37 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+.++.|+||+|+|||||+ +.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHH
Confidence 678999999999999996 444443
No 388
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.20 E-value=0.014 Score=53.27 Aligned_cols=27 Identities=41% Similarity=0.676 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+..+.|+||+|+||||++ +.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la-~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIA-RRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHHh
Confidence 35678999999999999995 5555554
No 389
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.15 E-value=0.0096 Score=53.91 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.9
Q ss_pred CCCeEEEEcCCCCChhhHH
Q 043574 27 VPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLL 45 (530)
.+.+.+|+||+|+||||++
T Consensus 22 ~~~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLL 40 (203)
T ss_dssp CSEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHH
Confidence 4568999999999999995
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.14 E-value=0.0091 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+..++|+||+||||||+. +.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a-~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC-EFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHh
Confidence 457999999999999995 5555554
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.14 E-value=0.0071 Score=55.75 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..++|.|+.||||||++ +.|.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~-~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV-NILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH-TTTGGGC
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHhc
Confidence 5578999999999999995 5555554
No 392
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.14 E-value=0.011 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+..++|+||+||||||+. +.+.+.+
T Consensus 3 ~~~i~i~G~~gsGkst~~-~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA-KRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHHHT
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHhc
Confidence 457999999999999996 4444433
No 393
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.13 E-value=0.011 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.-++|+|++||||||| ++++..+
T Consensus 30 ~kI~vvG~~~vGKSsL-in~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSF-MNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHH-HHHHTTT
T ss_pred CEEEEECCCCCCHHHH-HHHHhCC
Confidence 3589999999999999 5887764
No 394
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.11 E-value=0.011 Score=58.47 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.|+++.|.||+|+|||||++ .+............||+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal-~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVAL-HAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHH-HHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHhCCCeEEEEECC
Confidence 67899999999999999964 4443332223346777643
No 395
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.10 E-value=0.0096 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 36 ki~vvG~~~vGKSsl-i~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSL-LMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHH-HHHHHC-
T ss_pred EEEEECcCCCCHHHH-HHHHHcC
Confidence 489999999999999 5888764
No 396
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.01 Score=51.83 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 27 ki~vvG~~~~GKSsl-i~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCL-LIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCCCHHHH-HHHHhcC
Confidence 589999999999999 5888764
No 397
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.07 E-value=0.01 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 30 ki~vvG~~~vGKSsL-i~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTAL-LHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 589999999999999 58887653
No 398
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.06 E-value=0.011 Score=56.44 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.++|+||||+|||||. ..+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA-~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA-LELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH-HHHHTT
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHHh
Confidence 6788999999999999996 555554
No 399
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.04 E-value=0.011 Score=56.56 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+..++|+|++||||||| ++++...
T Consensus 8 ~~~VaIvG~~nvGKSTL-ln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTL-LNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHH-HHHHHTC
T ss_pred CCEEEEECCCCCCHHHH-HHHHHCC
Confidence 34799999999999999 5888764
No 400
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.03 E-value=0.031 Score=53.85 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+..+.|+||+|+||||+. +.+...
T Consensus 50 ~~~~vll~GppGtGKT~la--~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA--ETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH--HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH--HHHHHH
Confidence 5678999999999999996 555543
No 401
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.99 E-value=0.011 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.-++|+|++||||||| ++++...
T Consensus 4 ~~i~lvG~~g~GKTTL-~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTI-FNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHH-HHHHHTT
T ss_pred eEEEEECCCCCCHHHH-HHHHhCC
Confidence 3589999999999999 5777654
No 402
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.99 E-value=0.011 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 11 ki~i~G~~~~GKTsl-i~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCM-LICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887653
No 403
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.97 E-value=0.0071 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.+.|+||+|+|||||+ +.+.+.
T Consensus 43 ~~~~vll~G~~GtGKT~la-~~la~~ 67 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLA-KAVAGE 67 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHH-HHHHHH
T ss_pred CCceEEEECCCCCcHHHHH-HHHHHH
Confidence 3456889999999999996 555444
No 404
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.96 E-value=0.011 Score=57.25 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERL 49 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rL 49 (530)
.+.+.+|+||+|+|||||+ .-+
T Consensus 22 ~~~~~~i~G~NGsGKS~ll-eAi 43 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLL-DAI 43 (339)
T ss_dssp CSEEEEEECCTTSSHHHHH-HHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHH
Confidence 5568999999999999995 544
No 405
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.92 E-value=0.024 Score=54.53 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
..|++++|.|++|+|||||+++-+.+..... ...+|+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEE
Confidence 4688999999999999999765554433222 2344544
No 406
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.91 E-value=0.012 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.-++|+|++||||||| +++++..
T Consensus 23 ~~I~lvG~~g~GKStl-~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAA-GNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHH-HHHHHTS
T ss_pred eEEEEECCCCCCHHHH-HHHHhCC
Confidence 3589999999999999 5888764
No 407
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.91 E-value=0.016 Score=52.60 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=19.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.++.++++||+||||||++..-+++
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4789999999999999976333443
No 408
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.91 E-value=0.0054 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=4.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 22 ~i~v~G~~~~GKssl-i~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSAL-ISMFTSK 43 (208)
T ss_dssp EEEEC------------------
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5877765
No 409
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.90 E-value=0.023 Score=52.19 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=26.6
Q ss_pred hhHHHHHhhhhccC----CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 12 PLLETVLNNHAQHH----RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 12 p~le~vL~~~~qi~----~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
|+++.+........ ....-++|+|++||||||| ++++...
T Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSL-ln~l~g~ 49 (299)
T 2aka_B 6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSV-LENFVGR 49 (299)
T ss_dssp HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHH-HHHHHTS
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHH-HHHHHCC
Confidence 45555544433321 2233599999999999999 5888764
No 410
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.88 E-value=0.013 Score=50.96 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 27 ki~vvG~~~~GKSsl-i~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCL-LIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888764
No 411
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.88 E-value=0.012 Score=58.90 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|||||||||| ++++...
T Consensus 182 kvaivG~~gvGKSTL-ln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTL-FNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHH-HHHHHTS
T ss_pred eEEEECCCCCCHHHH-HHHHhCC
Confidence 589999999999999 5777664
No 412
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.85 E-value=0.014 Score=51.78 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 29 ki~vvG~~~vGKSsL-~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAM-LQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCCCHHHH-HHHHhcC
Confidence 489999999999999 5888765
No 413
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.014 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++..+-
T Consensus 15 ki~v~G~~~vGKSsl-i~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNL-LSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 489999999999999 58887653
No 414
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.84 E-value=0.027 Score=51.45 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+.|+||+|+||||++ +.+.+.+
T Consensus 40 ~~ll~G~~G~GKt~la-~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA-IALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHH-HHHHHHH
T ss_pred eEEEECcCCcCHHHHH-HHHHHHh
Confidence 4999999999999995 6666554
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.82 E-value=0.012 Score=53.51 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
..+++|+|++||||||+. +.++.. .|--+|+.+
T Consensus 12 ~~iIgltG~~GSGKSTva--~~L~~~----lg~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVC--EILKNK----YGAHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHH--HHHHHH----HCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHH--HHHHHh----cCCEEEECc
Confidence 367999999999999996 555542 145566644
No 416
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.81 E-value=0.0078 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
--++++|++||||||| ++++..
T Consensus 23 ~~i~v~G~~~~GKssl-i~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSI-LYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHH-HHHTCC
T ss_pred eEEEEECCCCCCHHHH-HHHHHc
Confidence 3599999999999999 577754
No 417
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.81 E-value=0.011 Score=59.27 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.+++|+||||+|||||+ .++..
T Consensus 27 g~~~i~G~nG~GKttll--~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLL--EAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHH--HHHHH
T ss_pred CeEEEECCCCCChhHHH--HHHHH
Confidence 38999999999999996 55553
No 418
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.80 E-value=0.013 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 31 ki~vvG~~~vGKSsl-i~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCV-VQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCCCHHHH-HHHHhhC
Confidence 489999999999999 5888765
No 419
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.80 E-value=0.022 Score=55.24 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
+++++++||+|+||||++ .++...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~-~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA-GKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHH-HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 778999999999999995 55555543
No 420
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.79 E-value=0.021 Score=55.68 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.+.-++|+||||+||||+ ++.++..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~-~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT-AKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHH-HHHHHHHHH
Confidence 456789999999999999 477776554
No 421
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.79 E-value=0.018 Score=62.83 Aligned_cols=27 Identities=30% Similarity=0.628 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..++.++|+||||||||||+ +++.+..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa--rala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA--RAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH--HHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHH--HHHHHHc
Confidence 46778999999999999997 7777653
No 422
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.78 E-value=0.024 Score=51.03 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.....++++|+.||||||+ +.++...+. ......-|+.+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl-~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTL-TGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHH-HHHHHHHHT-TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHH-HHHHHHHHH-CCCeEEEEeCC
Confidence 3456789999999999999 588877665 33334455544
No 423
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.77 E-value=0.033 Score=53.34 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=28.3
Q ss_pred hhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 12 PLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 12 p~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
|.+..++.........+.++.|+||+|+|||++. +.+-+.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lA-r~i~~~ 48 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVA-RALHAC 48 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHH-HHHHHh
Confidence 4555565555554456778999999999999996 444443
No 424
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.70 E-value=0.019 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
--++|+|++|+||||| ++++...
T Consensus 37 ~~I~lvG~~g~GKSSL-in~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSST-VNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHH-HHHHHTS
T ss_pred cEEEEECCCCCCHHHH-HHHHhCC
Confidence 3589999999999999 5888764
No 425
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.66 E-value=0.017 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.3
Q ss_pred CCCCCeEEEEcCCCCChhhHHHH
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLE 47 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~ 47 (530)
...|+-++|+||||+|||||.+.
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHH
Confidence 34788899999999999999633
No 426
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.64 E-value=0.016 Score=54.65 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
..|.+++|.|++||||||+ .+.+.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~-~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQ-SHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 3577899999999999999 477777654
No 427
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.64 E-value=0.016 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++|+|++||||||| ++++...-
T Consensus 23 ~I~lvG~~g~GKSSl-in~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSAT-GNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHH-HHHHHTSC
T ss_pred EEEEECCCCCcHHHH-HHHHhCCC
Confidence 489999999999999 58887643
No 428
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.63 E-value=0.033 Score=53.79 Aligned_cols=27 Identities=33% Similarity=0.552 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+..+.|+||+|+||||+. +.+.+.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la-~~la~~l 96 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMA-QTLAKHL 96 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHH-HHHHHHT
T ss_pred cCCCCEEEECCCCCCHHHHH-HHHHHHh
Confidence 45668999999999999996 4444443
No 429
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.60 E-value=0.015 Score=53.52 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=19.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..+..+.|+||+|+|||||+ +.+.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la-~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALA-AKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHHHH
Confidence 34567999999999999996 444443
No 430
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.48 E-value=0.024 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.+.|+||+|+|||||+ +.+.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la-~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLA-KAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHH
Confidence 3456999999999999996 444443
No 431
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.021 Score=55.49 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
....++|+|++||||||| ++++...
T Consensus 166 ~~~~v~lvG~~gvGKSTL-in~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTL-LKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHH-HHHHCSS
T ss_pred CCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 445699999999999999 5777664
No 432
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.46 E-value=0.041 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=20.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..++.+.|+||+|+|||||+ +.+.+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la-~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG-KCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH-HHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHH
Confidence 35678999999999999996 444443
No 433
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.45 E-value=0.031 Score=56.29 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
..|++++|.||+|+|||||+++-+.+
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999997544443
No 434
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.44 E-value=0.036 Score=50.71 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhhHHHHHHHhhc
Q 043574 31 LIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+.|+||+|+||||++ +.+.+.+
T Consensus 45 ~ll~G~~G~GKt~la-~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSV-HCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEECcCCCCHHHHH-HHHHHHh
Confidence 999999999999995 6665554
No 435
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.43 E-value=0.0076 Score=52.51 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 13 ki~vvG~~~~GKSsl-i~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTY-INRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHH-HCBCTTC
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 489999999999999 5777743
No 436
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.42 E-value=0.0096 Score=52.30 Aligned_cols=20 Identities=45% Similarity=0.757 Sum_probs=17.0
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 043574 30 PLIIHGPRGVGKTTLFLERLL 50 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl 50 (530)
-++|+|++||||||| +++++
T Consensus 17 ki~v~G~~~~GKSsl-i~~~~ 36 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTF-VKRHL 36 (221)
T ss_dssp EEEEEECTTSSHHHH-HTTBH
T ss_pred EEEEECCCCCCHHHH-HHHHH
Confidence 489999999999999 57734
No 437
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.38 E-value=0.015 Score=54.11 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
-++|+|++|+||||| ++.+..
T Consensus 10 ~I~vvG~~g~GKSTL-in~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTL-INSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHH-HHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHhC
Confidence 389999999999999 577654
No 438
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.37 E-value=0.021 Score=52.62 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++|.||.||||||.. +++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa-~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA-KRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 4789999999999996 6666654
No 439
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.34 E-value=0.028 Score=51.55 Aligned_cols=23 Identities=48% Similarity=0.715 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+.|+||+|+||||++ +.+.+.+
T Consensus 48 ~~ll~G~~G~GKT~la-~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA-LALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECcCCCCHHHHH-HHHHHHh
Confidence 5999999999999995 6665554
No 440
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.33 E-value=0.018 Score=57.48 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.|+-++|+||||+||||+. ..++.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a-~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETA-LELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHH
T ss_pred CCEEEEEEeCCCCCHHHHH-HHHHh
Confidence 6788999999999999996 55555
No 441
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.33 E-value=0.027 Score=51.58 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.0
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
...|++.+++||.|+||||.+++.+.+-
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999976665554
No 442
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.021 Score=51.94 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
-++|+|++||||||| ++++..
T Consensus 39 kVvlvG~~~vGKSSL-l~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTL-ANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHH-HHHHHh
Confidence 389999999999999 588874
No 443
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.29 E-value=0.026 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.+.|+||+|+|||||+ +.+.+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la-~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLA-KAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHH-HHHHHHT
T ss_pred CCceEEEECCCCccHHHHH-HHHHHHc
Confidence 4577999999999999996 5555443
No 444
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.23 E-value=0.037 Score=57.84 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEecccc-----------CCCCCCC-CCCccc-hhccC-CCCC-
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFAESIK-----------DHHPQHN-QSFPWS-SWSNC-EPPT- 92 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~~~Ig-----------~mvfQ~~-nLFPHt-sveNV-alp~- 92 (530)
++-+.|+||+|+|||||+ +++.+... .+.++++- .++. ...||.. ..+|.. .+++| .++.
T Consensus 64 p~GvLL~GppGtGKTtLa--raIa~~~~--~~~i~i~g-~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~ 138 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLA--RAVAGEAR--VPFITASG-SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 138 (499)
T ss_dssp CSEEEEECSSSSSHHHHH--HHHHHHTT--CCEEEEEG-GGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCC
T ss_pred CceEEEECCCCCCHHHHH--HHHHHHhC--CCEEEEeh-hHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 445999999999999997 66665433 22444431 2321 1235654 367774 44777 3321
Q ss_pred --------hhhHHHHHHHHHHHHH
Q 043574 93 --------LSNCKAQLETCLESMA 108 (530)
Q Consensus 93 --------~~d~r~r~e~aLE~~a 108 (530)
.++.++.+.++|..|.
T Consensus 139 r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 139 RGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp SSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred hccCcCCCcHHHHHHHHHHHHHhc
Confidence 2333566777776654
No 445
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.22 E-value=0.032 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
...++|+|+.|+||||| ++++...
T Consensus 24 ~~~I~vvG~~~~GKSTl-ln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSV-LENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHH-HHHHHTS
T ss_pred CCeEEEEcCCCCCHHHH-HHHHHCC
Confidence 34599999999999999 5888764
No 446
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.21 E-value=0.025 Score=53.26 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
...|.+++++||.|+||||++++.+.+-
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999976655544
No 447
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.12 E-value=0.018 Score=56.82 Aligned_cols=21 Identities=38% Similarity=0.748 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhhHHHHHHHhh
Q 043574 31 LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 31 lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
++|+|++|+||||| ++++...
T Consensus 40 I~vvG~~g~GKSTL-ln~L~~~ 60 (361)
T 2qag_A 40 LMVVGESGLGKSTL-INSLFLT 60 (361)
T ss_dssp EEECCCTTSCHHHH-HHHHTTC
T ss_pred EEEEcCCCCCHHHH-HHHHhCC
Confidence 79999999999999 4776543
No 448
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.12 E-value=0.036 Score=55.75 Aligned_cols=40 Identities=23% Similarity=0.104 Sum_probs=27.2
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
..|++++|.||+|+|||||+++-+.+.........+|+.+
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3678999999999999999766555443222223555553
No 449
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.11 E-value=0.022 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
.+++++++||+||||||++ .++...+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~-~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA-GKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH-HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4678999999999999994 66665553
No 450
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.11 E-value=0.02 Score=64.26 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.4
Q ss_pred CCCCeEEEEcCCCCChhhHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLL 45 (530)
..|++++|+||||||||||+
T Consensus 608 ~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 608 PLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ESSSEEEEECSTTSSHHHHH
T ss_pred cCCcEEEEEccCCCChhhhH
Confidence 47899999999999999995
No 451
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.09 E-value=0.027 Score=51.65 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCC
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNK 55 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~ 55 (530)
+|+.|+|-|+-||||||+ ++.+.+.+..
T Consensus 1 M~kFI~~EG~dGsGKsTq-~~~L~~~L~~ 28 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTV-INEVYHRLVK 28 (205)
T ss_dssp -CEEEEEECCTTSCHHHH-HHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHH-HHHHHHHHHC
Confidence 467899999999999999 5777777753
No 452
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.09 E-value=0.022 Score=58.61 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+++++++||+|+||||++ .++...+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~-~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTA-AKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5678999999999999995 5554444
No 453
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.07 E-value=0.02 Score=54.84 Aligned_cols=27 Identities=41% Similarity=0.476 Sum_probs=21.9
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 25 HRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 25 ~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+...-.++|+|++||||||| +++++..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTL-in~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTL-LNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHH-HHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHH-HHHHhCC
Confidence 33445799999999999999 5888865
No 454
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.07 E-value=0.029 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
...--++|+|++|+||||| ++++..+
T Consensus 153 ~~~~~i~i~G~~~~GKssl-i~~~~~~ 178 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCL-LISYTTN 178 (332)
T ss_dssp TTCEEEEEEESTTSSHHHH-HHHHHHS
T ss_pred cceeEEEEECCCCCChHHH-HHHHHhC
Confidence 3445689999999999999 5887754
No 455
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.11 E-value=0.0092 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 32 ki~v~G~~~~GKSsl-i~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCL-LISYTTN 53 (204)
Confidence 489999999999999 5777653
No 456
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.01 E-value=0.025 Score=56.34 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=18.9
Q ss_pred CCe-EEEEcCCCCChhhHHHHHHHhh
Q 043574 28 PQP-LIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 28 gr~-lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
+-. ++|+|++||||||| ++++...
T Consensus 178 ~~~~V~lvG~~naGKSTL-ln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSL-FNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHH-HHHHHCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHCC
Confidence 344 89999999999999 4777654
No 457
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.98 E-value=0.028 Score=54.53 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
..++|+|++|||||||+ +.+..
T Consensus 35 p~I~vvG~~~sGKSSLl-n~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVL-ESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHH-HHHHT
T ss_pred CEEEEECCCCCcHHHHH-HHHhC
Confidence 37999999999999995 66665
No 458
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.95 E-value=0.049 Score=50.98 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=21.7
Q ss_pred cCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 24 HHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 24 i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
....+.++.+.||+|+||||++ +.+.+.+
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la-~~la~~l 72 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVA-KALCHDV 72 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHH-HHHHHHT
T ss_pred cCCCCeEEEeeCcCCCCHHHHH-HHHHHHh
Confidence 3455567888899999999995 6665554
No 459
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.93 E-value=0.022 Score=58.13 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.++.++|+||+|||||||+ +.+..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL-~~Lsg 179 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLL-AAMTR 179 (416)
T ss_dssp CSCSEEEECCGGGCHHHHH-HHHCS
T ss_pred CCCEEEEECCCCCcHHHHH-HHHHc
Confidence 4567999999999999996 54443
No 460
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.90 E-value=0.047 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=19.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..++.+.|+||+|+|||||. +.+..
T Consensus 61 ~~~~~iLl~GppGtGKT~la--~ala~ 85 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALA--LAIAQ 85 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHH--HHHHH
T ss_pred CCCCeEEEECCCcCCHHHHH--HHHHH
Confidence 34567999999999999996 55444
No 461
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.89 E-value=0.027 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++|+|++||||||| ++++...
T Consensus 5 kI~lvG~~nvGKSTL-~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSL-FNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHH-HHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHHCC
Confidence 489999999999999 5777653
No 462
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.86 E-value=0.0083 Score=51.89 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=18.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++|||||||+ +++..+
T Consensus 35 ki~vvG~~~~GKSsli-~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLL-LRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTT-TSSBCC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 4899999999999994 666653
No 463
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.83 E-value=0.039 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.|+++.|.||+|+|||||+++-+.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999997555544
No 464
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.80 E-value=0.023 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
.|+-+.|+||||+||||+.+. ++.
T Consensus 146 ~g~gvli~G~sG~GKStlal~-l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALD-LIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHH-HHT
T ss_pred CCEEEEEEcCCCCCHHHHHHH-HHH
Confidence 678899999999999999743 444
No 465
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.79 E-value=0.023 Score=53.90 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCCeEEE--EcCCCCChhhHHHHHHHhhc
Q 043574 26 RVPQPLII--HGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 26 ~~gr~lVL--~GPSGvGKSTLLL~rLl~~l 53 (530)
..+..++| +||+|+|||||+ +.+.+.+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~-~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLA-KFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHH-HHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHH-HHHHHHH
Confidence 34567888 999999999994 7777654
No 466
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.79 E-value=0.03 Score=53.93 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhh
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..++|+|++||||||| +++++..
T Consensus 8 g~V~ivG~~nvGKSTL-ln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTL-LNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHTS
T ss_pred CEEEEECCCCCCHHHH-HHHHhCC
Confidence 3589999999999999 5888864
No 467
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.78 E-value=0.047 Score=55.28 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=24.6
Q ss_pred HHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 14 LETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 14 le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
++.+...........++++|+||.|+|||||+ ..+.+
T Consensus 133 l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~ 169 (591)
T 1z6t_A 133 VNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA-AEAVR 169 (591)
T ss_dssp HHHHHHHHTTSTTSCEEEEEECCTTSSHHHHH-HHHHC
T ss_pred HHHHHHHHhcccCCCceEEEEcCCCCCHHHHH-HHHHh
Confidence 34443333332345678999999999999996 55543
No 468
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.76 E-value=0.036 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.+.+.|+||+|+||||++ +.+.+.+
T Consensus 77 ~~~lLL~GppGtGKTtla-~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA-HLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHH-HHHHHHT
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHc
Confidence 478999999999999996 5555544
No 469
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.73 E-value=0.037 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.+.|+||+|+|||||+ +.+...
T Consensus 147 ~~~~vLL~GppGtGKT~la-~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA-KAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH-HHHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHh
Confidence 4678999999999999996 444443
No 470
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.72 E-value=0.036 Score=50.83 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|.+||||||| ++|++.+
T Consensus 15 KivlvGd~~VGKTsL-i~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSL-ITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCcCHHHH-HHHHHhC
Confidence 389999999999999 5777654
No 471
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.71 E-value=0.04 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.+.|+||+|+|||||+ +.+.+.+
T Consensus 83 ~~~~iLL~GppGtGKT~la-~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLA-KAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCceEEEECCCCCcHHHHH-HHHHHHh
Confidence 4456999999999999996 5555543
No 472
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.62 E-value=0.037 Score=58.32 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=31.1
Q ss_pred hhhHHHHHhhhhc-cCCCCCeEEEEcCCCCChhhHHHHHHHhhcC
Q 043574 11 RPLLETVLNNHAQ-HHRVPQPLIIHGPRGVGKTTLFLERLLKDLN 54 (530)
Q Consensus 11 rp~le~vL~~~~q-i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~ 54 (530)
||=+-.+|..+.+ ....+..++|+|+|||||||+- +.|-+.+.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa-~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLS-IALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHH-HHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHH-HHHHHHHH
Confidence 4555667776443 3567789999999999999996 55555554
No 473
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.61 E-value=0.043 Score=57.69 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=30.7
Q ss_pred hhhHHHHHhhhhc-cCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 11 RPLLETVLNNHAQ-HHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 11 rp~le~vL~~~~q-i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
||-+-.+|..+.. ....+..++|+|++||||||+. +.+.+.+
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia-~~La~~L 396 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIA-EILATML 396 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHH-HHHHHHh
Confidence 5666677777553 3456788999999999999995 5555544
No 474
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.59 E-value=0.024 Score=63.07 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=18.8
Q ss_pred CCCCeEEEEcCCCCChhhHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLL 45 (530)
..|++++|+||||||||||+
T Consensus 521 ~~Geiv~I~G~nGSGKSTLl 540 (842)
T 2vf7_A 521 PLGVMTSVTGVSGSGKSTLV 540 (842)
T ss_dssp ESSSEEEEECCTTSSHHHHC
T ss_pred cCCCEEEEEcCCCcCHHHHH
Confidence 58899999999999999996
No 475
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.47 E-value=0.046 Score=52.39 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=28.8
Q ss_pred hhhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 11 RPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 11 rp~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
-++++++-.....+|+ ...++|+||.|+||||++ ..+.+.+
T Consensus 42 ~~f~~~l~~~~~~iPk-kn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 42 ITFLGALKSFLKGTPK-KNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHHTCTT-CSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-ccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4567776666555544 456999999999999996 4454443
No 476
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.45 E-value=0.024 Score=64.39 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.7
Q ss_pred CCCCeEEEEcCCCCChhhHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLL 45 (530)
..|++++|.||||+|||||+
T Consensus 666 ~~GeivaI~G~nGSGKSTLl 685 (993)
T 2ygr_A 666 PLGVLTSVTGVSGSGKSTLV 685 (993)
T ss_dssp ESSSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 48899999999999999996
No 477
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.40 E-value=0.04 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
-++|+|++||||||| ++++..
T Consensus 7 kI~lvG~~nvGKTsL-~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSL-FNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHH-HHHHHT
T ss_pred EEEEECCCCCCHHHH-HHHHHC
Confidence 489999999999999 588775
No 478
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.36 E-value=0.029 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERL 49 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rL 49 (530)
-.+.+.+|+||+|+||||++ .-+
T Consensus 23 f~~gl~vi~G~NGaGKT~il-eAI 45 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIF-EAV 45 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHH-HHH
T ss_pred cCCCeEEEECCCCCCHHHHH-HHH
Confidence 35678999999999999996 443
No 479
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.35 E-value=0.043 Score=57.06 Aligned_cols=24 Identities=38% Similarity=0.737 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++.+.|+||+|+|||||+ +.+.+
T Consensus 48 ~p~gvLL~GppGtGKT~La--raia~ 71 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLA--RAVAG 71 (476)
T ss_dssp CCSEEEEECCTTSSHHHHH--HHHHH
T ss_pred CCCeEEEECCCCCCHHHHH--HHHHH
Confidence 4567999999999999996 55544
No 480
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.25 E-value=0.049 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
+..+.|.||+|+|||||+ +.+.+.+
T Consensus 46 ~~~vll~G~pGtGKT~la-~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSV-NTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHH-HHHHHHT
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHh
Confidence 568999999999999996 5554444
No 481
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.25 E-value=0.06 Score=56.99 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=28.0
Q ss_pred hhhHHHHHhhhhc-cCCCCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 11 RPLLETVLNNHAQ-HHRVPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 11 rp~le~vL~~~~q-i~~~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
||-+..++..... ....+.+++|+|+|||||||+. +.+-+.+
T Consensus 378 ~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA-~~La~~L 420 (573)
T 1m8p_A 378 YPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIA-RALQVTL 420 (573)
T ss_dssp CHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred cccccHHHHHhcccccccceEEEeecCCCCCHHHHH-HHHHHHh
Confidence 4445555555432 2345678999999999999996 5454444
No 482
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.23 E-value=0.045 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.++|+|++||||||| ++++...
T Consensus 3 kI~lvG~~n~GKSTL-~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTL-FNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHH-HHHHHTT
T ss_pred EEEEECCCCCCHHHH-HHHHHCC
Confidence 589999999999999 5777654
No 483
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.22 E-value=0.051 Score=54.20 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEEe
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDFA 66 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl~ 66 (530)
.++++.|.||+|+|||||+++-+.+.. ......+||+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 578999999999999999755444332 222347777753
No 484
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.13 E-value=0.043 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++...
T Consensus 5 ~I~lvG~~n~GKSTL-in~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTL-FNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHH-HHHHHTT
T ss_pred EEEEECCCCCCHHHH-HHHHhCC
Confidence 489999999999999 5887764
No 485
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.12 E-value=0.053 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++.+.|+||+|+|||||+ +.+.+.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA-~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLA-KAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHH-HHHHHHC
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHc
Confidence 4578999999999999996 4444443
No 486
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.05 E-value=0.04 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..+.|+||+|+|||||+ +.+.+.+
T Consensus 46 ~~vLl~G~~GtGKT~la-~~la~~~ 69 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAV-RALAALL 69 (350)
T ss_dssp CCEEEECCGGGCTTHHH-HHHHHHS
T ss_pred ceEEEECCCCccHHHHH-HHHHHhC
Confidence 45999999999999995 5555544
No 487
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.01 E-value=0.046 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|++||||||| ++++..+
T Consensus 5 KI~lvG~~~vGKSSL-i~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSM-RSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 489999999999999 5888776
No 488
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.99 E-value=0.097 Score=53.70 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=25.6
Q ss_pred HHHHHhhhhcc-CCCCCeEEEEcCCCCChhhHHHHHHHh
Q 043574 14 LETVLNNHAQH-HRVPQPLIIHGPRGVGKTTLFLERLLK 51 (530)
Q Consensus 14 le~vL~~~~qi-~~~gr~lVL~GPSGvGKSTLLL~rLl~ 51 (530)
++.+....... ....++++|+|+.|+|||||. +++.+
T Consensus 137 ~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA-~~v~~ 174 (549)
T 2a5y_B 137 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIA-SQALS 174 (549)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHH-HHHHH
T ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHH-HHHHH
Confidence 55555554332 234578999999999999996 55554
No 489
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=92.96 E-value=0.023 Score=64.39 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.6
Q ss_pred CCCCeEEEEcCCCCChhhHH
Q 043574 26 RVPQPLIIHGPRGVGKTTLF 45 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLL 45 (530)
..|++++|.||||+|||||+
T Consensus 648 ~~Geiv~I~G~nGSGKSTLl 667 (972)
T 2r6f_A 648 PLGTFVAVTGVSGSGKSTLV 667 (972)
T ss_dssp ESSSEEECCBCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 47899999999999999996
No 490
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.96 E-value=0.046 Score=55.52 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=32.5
Q ss_pred hhHHHHHhh--hhccCCCCCeEEEEcCCCCChhhHHHHHHHhhcCC-CCCceEEEEE
Q 043574 12 PLLETVLNN--HAQHHRVPQPLIIHGPRGVGKTTLFLERLLKDLNK-EPHLTGYVDF 65 (530)
Q Consensus 12 p~le~vL~~--~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~-~~~Gtg~Idl 65 (530)
|-|+.+|.- .--+++ | .+.|.||+|+|||||+|+-+.+.... +....+||+.
T Consensus 12 ~~LD~~LGg~~~GGl~~-G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 12 PMMNIALSGEITGGMQS-G-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp HHHHHHHHSSTTCCBCS-E-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHhCCCCCCCCcC-C-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 445666641 111233 4 78999999999999987766655432 1334677774
No 491
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.88 E-value=0.073 Score=54.00 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVDF 65 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Idl 65 (530)
..|++++|.||+|+|||||+++-+.+.........+|+.+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 4678999999999999999866666654331233566654
No 492
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.86 E-value=0.096 Score=54.26 Aligned_cols=26 Identities=27% Similarity=0.640 Sum_probs=19.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
..+..+.|+||+|+|||+++ +.+.+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lA-raia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA-RAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH-HHHHHH
Confidence 45567999999999999996 444443
No 493
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.85 E-value=0.06 Score=55.94 Aligned_cols=37 Identities=32% Similarity=0.438 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
.+.+++++||+|+||||+ +.++...+.........|+
T Consensus 99 ~p~vIlivG~~G~GKTTt-~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTT-VAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHH-HHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHH-HHHHHHHHHHCCCeEEEEe
Confidence 367899999999999999 4777766654333344444
No 494
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.80 E-value=0.069 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.741 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 29 QPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 29 r~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
..++|+||+|+|||||+ +.+...
T Consensus 51 ~~vLL~GppGtGKTtlA--r~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA--EVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHH--HHHHHH
T ss_pred cEEEEECCCCCcHHHHH--HHHHHH
Confidence 56999999999999996 555543
No 495
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.76 E-value=0.057 Score=50.78 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHhhcCCCCCceEEEE
Q 043574 26 RVPQPLIIHGPRGVGKTTLFLERLLKDLNKEPHLTGYVD 64 (530)
Q Consensus 26 ~~gr~lVL~GPSGvGKSTLLL~rLl~~l~~~~~Gtg~Id 64 (530)
.++++..++||.|+||||.||+++-+..... ....++.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~k 55 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIK 55 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEc
Confidence 3688999999999999988777776654433 2344443
No 496
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.67 E-value=0.055 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHhhc
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
.++++|++|+||||| ++++....
T Consensus 101 ~v~~vG~~~vGKSsl-in~l~~~~ 123 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTI-INKLKGKR 123 (262)
T ss_dssp EEEEEESTTSSHHHH-HHHHHTTC
T ss_pred heEEeCCCCCCHHHH-HHHHhccc
Confidence 689999999999999 58887654
No 497
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.52 E-value=0.095 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHhhc
Q 043574 28 PQPLIIHGPRGVGKTTLFLERLLKDL 53 (530)
Q Consensus 28 gr~lVL~GPSGvGKSTLLL~rLl~~l 53 (530)
...++|+||+|+||||++ +.+...+
T Consensus 201 ~~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 346789999999999995 5554443
No 498
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.24 E-value=0.12 Score=50.52 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=27.6
Q ss_pred chhhHHHHHhhhhccCCCCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 10 PRPLLETVLNNHAQHHRVPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 10 prp~le~vL~~~~qi~~~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
|..++..+.++....+.+...++|+||.|+|||+|. +.+..
T Consensus 86 ~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a--~ala~ 126 (267)
T 1u0j_A 86 PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA--EAIAH 126 (267)
T ss_dssp HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH--HHHHh
Confidence 344555555555544344457999999999999997 55554
No 499
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.24 E-value=0.075 Score=55.92 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHhh
Q 043574 27 VPQPLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 27 ~gr~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
.|+.++|.||||+|||||+ +.+...
T Consensus 150 kGq~~~i~G~sGvGKTtL~-~~l~~~ 174 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLI-QELIHN 174 (473)
T ss_dssp TTCEEEEECCSSSCHHHHH-HHHHHH
T ss_pred cCCEEEEECCCCCCccHHH-HHHHhh
Confidence 6788999999999999994 666554
No 500
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.23 E-value=0.12 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHhh
Q 043574 30 PLIIHGPRGVGKTTLFLERLLKD 52 (530)
Q Consensus 30 ~lVL~GPSGvGKSTLLL~rLl~~ 52 (530)
-++|+|.+||||||| +++++..
T Consensus 177 ki~lvG~~nvGKSSL-in~l~~~ 198 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSL-VNAMLGE 198 (436)
T ss_dssp EEEEECSTTSSHHHH-HHHHHTS
T ss_pred EEEEEcCCCCCHHHH-HHHHhCC
Confidence 589999999999999 5888864
Done!