BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043575
MAGIAIILDLWRKNPSFCSPHTALHSSGLLSATAAAASAAAAAPFASRFLFGSPKIPVAY
CDAGAAITEDYIPNFGKVPGSIFQHDAIKYTTKEYNIELKPLFSAFELRALAMTSLRSFL
MFYLPLLEPDMSTEDDDDDFPQDSPEQRRLDLVVPFKKSVKQIVRETTVVTTRRILERLA
VHYVSQRMAWKLLKDVPKSATRKAQRGLPTTVYFFRVSRTTLRGHFLGVAASWIVQIGIE
IYRYFNRIMNSKEEDSDGVNKAKEAKVLGKKVTGITIRCGASLVFASIGAGIGATTVRPS
IGQWIGCAVGDLAGPIVVSFCLDRALHLDL

High Scoring Gene Products

Symbol, full name Information P value
AT5G55610 protein from Arabidopsis thaliana 8.0e-85

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043575
        (330 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2162132 - symbol:AT5G55610 species:3702 "Arabi...   849  8.0e-85   1


>TAIR|locus:2162132 [details] [associations]
            symbol:AT5G55610 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006857 "oligopeptide transport" evidence=RCA]
            [GO:0009060 "aerobic respiration" evidence=RCA] [GO:0046686
            "response to cadmium ion" evidence=RCA] GO:GO:0005739 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0016020 EMBL:AB009050
            EMBL:BT002809 EMBL:BT004366 IPI:IPI00545071 RefSeq:NP_200372.1
            UniGene:At.20875 STRING:Q9FM77 PaxDb:Q9FM77 PRIDE:Q9FM77
            EnsemblPlants:AT5G55610.1 GeneID:835655 KEGG:ath:AT5G55610
            TAIR:At5g55610 eggNOG:NOG263812 HOGENOM:HOG000006250
            InParanoid:Q9FM77 OMA:TFRAHAL PhylomeDB:Q9FM77
            ProtClustDB:CLSN2686994 ArrayExpress:Q9FM77 Genevestigator:Q9FM77
            Uniprot:Q9FM77
        Length = 329

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 175/332 (52%), Positives = 217/332 (65%)

Query:     1 MAGIAIILDLWRKNPSFCSPHTXXXXXXXXXXXXXXXXXXXXXXXXXRFLFGSPKIPVAY 60
             MAGIA++LDL +K+ S  + H+                         RFLFGS +  VAY
Sbjct:     1 MAGIALVLDLLKKSQSKNTLHSSSFYSASAAAVSAAASAPFAS----RFLFGSFEPRVAY 56

Query:    61 CDAGAAITEDYIPNFGKVPGSIFQHDAIKYTT--KEYNIELKPLFSAFELRALAMTSLRS 118
             CDA AAI +DY+    K+   + Q   + Y +  KEYNI+ KP+ SAFE RALAMT++RS
Sbjct:    57 CDAAAAIDDDYLGAIRKMSADVLQRQPLAYISRSKEYNIQPKPVLSAFEFRALAMTTVRS 116

Query:   119 FLMFYLPLLEPDMSTEXXXXXFPQDSPEQRRLDLVVPFKKSVKQXXXXXXXXXXXXXXXX 178
              LMFYLPLLEP  ++E         + E R  DL+VP KKS KQ                
Sbjct:   117 LLMFYLPLLEPKTASEDDDDFLNNAAEENRHTDLIVPLKKSAKQIARETTVVTTRRVLER 176

Query:   179 XAVHYVSQRMAWKLLKDVPKSATRKAQRGLPTTVYFFRVSRTTLRGHFLGVAASWIVQIG 238
              A+ YVSQRMAWKLLKDVP+SA RKAQRGLPT VY F+VS+TTLRGHFLG+AASW+VQ+G
Sbjct:   177 LALSYVSQRMAWKLLKDVPQSALRKAQRGLPTHVYIFKVSQTTLRGHFLGIAASWVVQVG 236

Query:   239 IEIYR-YFNRIMNSKEEDSDGVNKAKEAKVLGKKVTGITIRCGASLVFASIGAGIGATTV 297
             IEIYR  F  +   +EE+ + V  +++AK LG KV GIT+RCGASLVFA+IGAGI +  +
Sbjct:   237 IEIYRCVFPNVKPEEEEEEEKVEISQQAKDLGNKVVGITVRCGASLVFAAIGAGICSCLI 296

Query:   298 RPSIGQWIGCAVGDLAGPIVVSFCLDRALHLD 329
             RPS GQWIGCA+GDLAGP+VVS CL + L  D
Sbjct:   297 RPSTGQWIGCALGDLAGPMVVSVCLQKTLQAD 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      330       283   0.00084  115 3  11 22  0.45    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  205 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.25u 0.10s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.25u 0.10s 20.35t   Elapsed:  00:00:01
  Start:  Fri May 10 08:34:02 2013   End:  Fri May 10 08:34:03 2013

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