BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043575
         (330 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8CFS6|KCNV2_MOUSE Potassium voltage-gated channel subfamily V member 2 OS=Mus
           musculus GN=Kcnv2 PE=2 SV=1
          Length = 562

 Score = 34.7 bits (78), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 76  GKVPGSIFQHD---AIKYTTKEYNIEL--KPLFSAFELRALAMTSLRSFLMFYLPLLEPD 130
           G  P  I +H     + + T E+ + L   P    F   AL +  L + L FYL LL   
Sbjct: 303 GGDPRPILEHVEMLCVAFFTLEFLLRLASTPNLQRFARSALNLVDLVAILPFYLQLLLEC 362

Query: 131 MSTEDDDDDFPQDSPEQRRLDLVVPFKKSVKQIVRETTVVTTRRILERLAVHYVSQR 187
            ++ED   +  +DSP +  L+ V    K V Q++R   ++   RIL +LA H    R
Sbjct: 363 FTSEDQRHN--KDSPREHDLETVGRVGK-VGQVLRIMRLMRIFRIL-KLARHSTGLR 415


>sp|Q6URK6|CADH5_BOVIN Cadherin-5 OS=Bos taurus GN=CDH5 PE=2 SV=1
          Length = 783

 Score = 32.3 bits (72), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 158 KSVKQIVRETTVVTTRRILERLAVHYVSQRMAWK-LLKDVPKSATRKAQRGLPTTVYFFR 216
           K++ +++   T V    I ++   H+  Q    K L+  V       AQR +      + 
Sbjct: 353 KNIARVIINVTDVDEPPIFQQPFYHFQLQENQKKPLIGSVLAKDPDAAQRDI-----RYS 407

Query: 217 VSRTTLRGHFLGVAASWIV----QIGIEIYRYFNRIMNSKEEDSDGVNKAKEAKV 267
           + RT+ +G F G+     +    ++  E+Y ++N  + +KE D  G    KE+ V
Sbjct: 408 IRRTSDKGQFFGITKKGGIYNDKELDREVYPWYNLTVEAKEVDLSGTPTGKESIV 462


>sp|Q3SPJ6|SYI_NITWN Isoleucine--tRNA ligase OS=Nitrobacter winogradskyi (strain Nb-255
           / ATCC 25391) GN=ileS PE=3 SV=1
          Length = 999

 Score = 32.0 bits (71), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 10  LWRKNPSFCSPHTALHSSGLL--SATAAAASAAAAAPFASRFLFGSPKIPVAYCDAGAAI 67
           +W K P     H AL  + ++  + T        A  F+++  +G  KI  A  D  A  
Sbjct: 227 VWVKFPVTSPAHGALSQASVVIWTTTPWTLPGNRAISFSNKIAYGLYKITDAPADNWAK- 285

Query: 68  TEDYIPNFGKVPGSIFQHDAIKYTTKEYNIELKPLFSAFELRALAMTSLRSFLMFYLPLL 127
           T D +    K+ G +F+   +    K  +I    L  A E  A  +  L     F +PLL
Sbjct: 286 TGDVLILANKLAGEVFKQARVTAYEKVRDIPADTL-DAVEC-AHPLKGLSGGYEFTVPLL 343

Query: 128 EPDMSTEDDDDDFPQDSPEQRRLDLVV 154
           + D  T+D    F   +P   R D  +
Sbjct: 344 DGDHVTDDTGTGFVHTAPGHGREDFDI 370


>sp|P97329|KI20A_MOUSE Kinesin-like protein KIF20A OS=Mus musculus GN=Kif20a PE=2 SV=1
          Length = 887

 Score = 32.0 bits (71), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 14/93 (15%)

Query: 111 LAMTSLRSFLMFYLPLLEPDMSTEDDDDDFPQDSPEQRRLDLVVPFKKSVKQIVRETTVV 170
           L + SL SF+  + P + P +  ED  D   +DSPE    D+ V  K+ + Q+V     +
Sbjct: 514 LGIPSLHSFIKKHSPQVGPGLEKEDKADSDLEDSPED-EADVSVYGKEELLQVVEAMKAL 572

Query: 171 TTRRILERLA-------------VHYVSQRMAW 190
             +   E+L              V  + QR  W
Sbjct: 573 LLKERQEKLQLEIQLREEICNEMVEQMQQREQW 605


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,487,841
Number of Sequences: 539616
Number of extensions: 4633012
Number of successful extensions: 15260
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15232
Number of HSP's gapped (non-prelim): 27
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)