Query 043575
Match_columns 330
No_of_seqs 36 out of 38
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 06:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15110 TMEM141: TMEM141 prot 41.5 79 0.0017 26.8 5.6 46 195-240 2-50 (94)
2 PF13488 Gly-zipper_Omp: Glyci 30.3 12 0.00026 27.4 -0.8 35 283-317 4-38 (46)
3 PF13441 Gly-zipper_YMGG: YMGG 29.4 20 0.00044 26.5 0.3 34 283-317 8-42 (45)
4 PF11981 DUF3482: Domain of un 26.8 63 0.0014 31.7 3.2 13 235-247 105-117 (292)
5 PF13436 Gly-zipper_OmpA: Glyc 25.4 30 0.00066 29.4 0.7 36 282-318 56-92 (118)
6 PF05818 TraT: Enterobacterial 23.8 24 0.00052 33.6 -0.3 39 281-320 89-128 (215)
7 KOG0649 WD40 repeat protein [G 21.1 24 0.00053 35.0 -0.8 18 295-312 201-218 (325)
8 TIGR03789 pdsO proteobacterial 19.1 36 0.00078 32.6 -0.1 30 285-315 46-75 (239)
9 KOG3244 Protein involved in ub 18.6 52 0.0011 32.3 0.8 27 287-315 54-80 (267)
10 PF05433 Rick_17kDa_Anti: Glyc 18.4 29 0.00062 25.0 -0.7 35 282-317 3-37 (42)
No 1
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=41.45 E-value=79 Score=26.83 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=35.3
Q ss_pred cchhhHHHhhhhCCChhHHHHHHHHHHHHHh---HHhhhhHHHHHHHHh
Q 043575 195 DVPKSATRKAQRGLPTTVYFFRVSRTTLRGH---FLGVAASWIVQIGIE 240 (330)
Q Consensus 195 Dv~kSA~RKa~R~~s~~~~a~~v~rTt~Rah---~LgvaA~wvVqv~i~ 240 (330)
|+++-.-.-+.+|-..-+|+-||+|.-|-+. .+|-.+.|.+|..+.
T Consensus 2 ~i~rv~d~~~~khPG~~~Ya~CqS~Af~kG~~tFv~G~~~~f~~Q~~iq 50 (94)
T PF15110_consen 2 DISRVDDAVADKHPGLQEYAACQSRAFMKGLFTFVLGTGATFFLQKAIQ 50 (94)
T ss_dssp -HHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred chhHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4545455556778889999999999888876 789999999998765
No 2
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=30.30 E-value=12 Score=27.36 Aligned_cols=35 Identities=43% Similarity=0.579 Sum_probs=23.5
Q ss_pred HHHhhhcccccceeecCCCchhHHhhhhcccccee
Q 043575 283 LVFASIGAGIGATTVRPSIGQWIGCAVGDLAGPIV 317 (330)
Q Consensus 283 LV~ASIGAgiGatlvrPs~GqwIGc~lGD~aGp~~ 317 (330)
.+-|.+|+.||+..=.|..|..||..+|=.+|..+
T Consensus 4 ~iGA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~i 38 (46)
T PF13488_consen 4 AIGAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAI 38 (46)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 44566677777633347788888888887776553
No 3
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=29.41 E-value=20 Score=26.50 Aligned_cols=34 Identities=41% Similarity=0.536 Sum_probs=24.6
Q ss_pred HHHhhhcccccceeec-CCCchhHHhhhhcccccee
Q 043575 283 LVFASIGAGIGATTVR-PSIGQWIGCAVGDLAGPIV 317 (330)
Q Consensus 283 LV~ASIGAgiGatlvr-Ps~GqwIGc~lGD~aGp~~ 317 (330)
++-+..|+.+|. ++- ...|..||..+|=++|.++
T Consensus 8 ~iGA~~GA~iG~-~~g~~~~GA~iGA~~Ga~~G~~~ 42 (45)
T PF13441_consen 8 AIGAAAGAVIGA-IIGNGGKGAAIGAAAGALAGAAI 42 (45)
T ss_pred HHHHHHHHHHHH-hhCCCcccchhhhhhhhhhhhhh
Confidence 445556666665 444 7889999999998888765
No 4
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=26.84 E-value=63 Score=31.69 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=9.0
Q ss_pred HHHHHhhhhhhhh
Q 043575 235 VQIGIEIYRYFNR 247 (330)
Q Consensus 235 Vqv~i~~YR~f~~ 247 (330)
++-+..+|++...
T Consensus 105 ~~~Ll~Ly~f~~~ 117 (292)
T PF11981_consen 105 QQALLALYRFRRD 117 (292)
T ss_pred HHHHHHHhCcccc
Confidence 4667889997543
No 5
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=25.44 E-value=30 Score=29.42 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=25.9
Q ss_pred HHHHhhhcccccceeec-CCCchhHHhhhhccccceee
Q 043575 282 SLVFASIGAGIGATTVR-PSIGQWIGCAVGDLAGPIVV 318 (330)
Q Consensus 282 sLV~ASIGAgiGatlvr-Ps~GqwIGc~lGD~aGp~~v 318 (330)
.++.|.+||++|+ ++- ++.|.-||.++|=+.|-+..
T Consensus 56 a~~GA~~GA~~Ga-~~G~~~~ga~~GAa~Ga~~G~~~g 92 (118)
T PF13436_consen 56 AAIGAAAGAAIGA-IIGGNGRGAAIGAAAGAAVGAAAG 92 (118)
T ss_pred HHHHHHHHHHHHh-hcCCCccchHHHHHHHHHHHHHhh
Confidence 4566677777777 444 48899999888887765543
No 6
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=23.84 E-value=24 Score=33.58 Aligned_cols=39 Identities=38% Similarity=0.422 Sum_probs=28.0
Q ss_pred hHHHHhhhcccccceeecCCCchhHH-hhhhccccceeeee
Q 043575 281 ASLVFASIGAGIGATTVRPSIGQWIG-CAVGDLAGPIVVSF 320 (330)
Q Consensus 281 ~sLV~ASIGAgiGatlvrPs~GqwIG-c~lGD~aGp~~v~~ 320 (330)
..+..|.+|+++|+ .--.+.|..+| +..|-++|.+...+
T Consensus 89 ga~~Ga~~G~~~g~-~~~~~~g~~~G~GlaGalig~~ada~ 128 (215)
T PF05818_consen 89 GALAGAATGAAIGA-YNSGSAGAAIGAGLAGALIGMIADAM 128 (215)
T ss_pred hHHHHhHHhhhhcc-ccCCccchhhhhhHHHhHHHHHHhhh
Confidence 35677788999997 55788899999 77776666554433
No 7
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=21.12 E-value=24 Score=35.03 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=16.0
Q ss_pred eeecCCCchhHHhhhhcc
Q 043575 295 TTVRPSIGQWIGCAVGDL 312 (330)
Q Consensus 295 tlvrPs~GqwIGc~lGD~ 312 (330)
.+.||.+|.||||..+|-
T Consensus 201 ~~lRp~~g~wigala~~e 218 (325)
T KOG0649|consen 201 NLLRPDWGKWIGALAVNE 218 (325)
T ss_pred hhcCcccCceeEEEeccC
Confidence 478999999999999874
No 8
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=19.09 E-value=36 Score=32.57 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=15.3
Q ss_pred HhhhcccccceeecCCCchhHHhhhhccccc
Q 043575 285 FASIGAGIGATTVRPSIGQWIGCAVGDLAGP 315 (330)
Q Consensus 285 ~ASIGAgiGatlvrPs~GqwIGc~lGD~aGp 315 (330)
.+.+||.+|. ++==+.|.-+|.++|-++|.
T Consensus 46 g~~~ga~~g~-~~gg~~G~~~G~~~G~~~g~ 75 (239)
T TIGR03789 46 GLGSGALLGA-LVGGPVGAIIGGITGGLIGQ 75 (239)
T ss_pred hHHHHHHHhh-hhccHHHHHHHHHHHHHhhh
Confidence 3444555554 22112566666666666654
No 9
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=18.60 E-value=52 Score=32.26 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.0
Q ss_pred hhcccccceeecCCCchhHHhhhhccccc
Q 043575 287 SIGAGIGATTVRPSIGQWIGCAVGDLAGP 315 (330)
Q Consensus 287 SIGAgiGatlvrPs~GqwIGc~lGD~aGp 315 (330)
.+|+++++ |+.|-.|-||.| +||..|-
T Consensus 54 ~aGSa~~a-l~~P~RgDmIa~-LGEtTg~ 80 (267)
T KOG3244|consen 54 GAGSAIMA-LVDPRRGDMIAA-LGETTGK 80 (267)
T ss_pred HHhHHHHH-hcCcccccHHHH-hccccCC
Confidence 45899998 999999999976 7898874
No 10
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=18.41 E-value=29 Score=25.03 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=26.0
Q ss_pred HHHHhhhcccccceeecCCCchhHHhhhhcccccee
Q 043575 282 SLVFASIGAGIGATTVRPSIGQWIGCAVGDLAGPIV 317 (330)
Q Consensus 282 sLV~ASIGAgiGatlvrPs~GqwIGc~lGD~aGp~~ 317 (330)
.++-+.+|+.+|. .+.-..|.+++..+|=++|.++
T Consensus 3 ~~~Ga~~Ga~~G~-~ig~~~g~~~g~~~Ga~~Ga~~ 37 (42)
T PF05433_consen 3 ALIGAAVGAVAGS-QIGGGNGRTLGAVAGAVAGALI 37 (42)
T ss_pred hHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHH
Confidence 3567778888887 5677788888887777776554
Done!