Query 043575
Match_columns 330
No_of_seqs 36 out of 38
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq0_A De novo designed antifr 17.0 1.2E+02 0.004 19.2 2.8 24 223-246 2-25 (26)
2 2d0b_A RNAse HIII, ribonucleas 15.1 59 0.002 30.5 1.7 14 309-322 101-114 (310)
3 3vn5_A RNAse HIII, ribonucleas 14.3 65 0.0022 29.7 1.7 14 309-322 81-94 (257)
4 1ov9_A VICH protein; dimer, he 7.2 2.6E+02 0.0089 19.8 2.3 25 158-182 11-35 (50)
5 2ful_A EIF-5, eukaryotic trans 7.2 41 0.0014 29.2 -2.3 16 120-135 147-162 (177)
6 2iu1_A EIF5, eukaryotic transl 6.4 1.4E+02 0.0048 26.6 0.7 17 119-135 140-156 (208)
7 4dhx_A Protein GANP, 80 kDa MC 6.3 7.8E+02 0.027 19.1 4.8 34 160-193 21-57 (75)
8 2kv5_A FST, putative uncharact 5.6 28 0.00096 23.5 -3.2 11 312-322 8-18 (33)
9 1lyv_A Protein-tyrosine phosph 5.5 2.4E+02 0.0082 25.7 1.7 16 54-69 234-249 (306)
10 1y9b_A Conserved hypothetical 5.3 5.9E+02 0.02 19.6 3.7 36 158-193 30-65 (90)
No 1
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=17.00 E-value=1.2e+02 Score=19.19 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=19.2
Q ss_pred HHhHHhhhhHHHHHHHHhhhhhhh
Q 043575 223 RGHFLGVAASWIVQIGIEIYRYFN 246 (330)
Q Consensus 223 Rah~LgvaA~wvVqv~i~~YR~f~ 246 (330)
|+|+--.+|+|||.-..+--|.|.
T Consensus 2 rsnfhplaasfivrcafehsrrft 25 (26)
T 2lq0_A 2 RSNFHPLAASFIVRCAFEHSRRFT 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcccchhhHHHHHHHHHhhhcccC
Confidence 678888899999988887766653
No 2
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=15.13 E-value=59 Score=30.51 Aligned_cols=14 Identities=50% Similarity=0.793 Sum_probs=11.4
Q ss_pred hhccccceeeeeee
Q 043575 309 VGDLAGPIVVSFCL 322 (330)
Q Consensus 309 lGD~aGp~~v~~~~ 322 (330)
=|+++||++++-|+
T Consensus 101 RGplaGPvV~aavi 114 (310)
T 2d0b_A 101 TGDYFGPIVVAAAY 114 (310)
T ss_dssp TTCSBSCEEEEEEE
T ss_pred CCCchhhhEEEEEE
Confidence 38999999998764
No 3
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=14.32 E-value=65 Score=29.72 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.3
Q ss_pred hhccccceeeeeee
Q 043575 309 VGDLAGPIVVSFCL 322 (330)
Q Consensus 309 lGD~aGp~~v~~~~ 322 (330)
=|+++||++++-|+
T Consensus 81 RGplaGPvv~aavi 94 (257)
T 3vn5_A 81 KGDIFGSLVLCCVC 94 (257)
T ss_dssp TTCSBSCEEEEEEE
T ss_pred CCCcccccEEEEEE
Confidence 38999999887664
No 4
>1ov9_A VICH protein; dimer, helix, coiled-coil, DNA binding protein; 2.30A {Vibrio cholerae} SCOP: a.155.1.1
Probab=7.20 E-value=2.6e+02 Score=19.83 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043575 158 KSVKQIVRETTVVTTRRILERLAVH 182 (330)
Q Consensus 158 kSvk~~~RE~sV~tTRR~LEriav~ 182 (330)
++.++++||+++-....++|.+-+-
T Consensus 11 RsLRA~arelsle~Lee~~eKl~~V 35 (50)
T 1ov9_A 11 RSLRAYARELTIEQLEEALDKLTTV 35 (50)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 7899999999999999999887654
No 5
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=7.19 E-value=41 Score=29.21 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=10.0
Q ss_pred HHHhhccCCCCCCCCC
Q 043575 120 LMFYLPLLEPDMSTED 135 (330)
Q Consensus 120 lm~ylPlLe~~~~~ee 135 (330)
.-+.-|.++|.-+-|+
T Consensus 147 ~~~~~pFI~WL~eAEE 162 (177)
T 2ful_A 147 RRAAKPFITWLETAES 162 (177)
T ss_dssp HHTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHcccc
Confidence 3455688888855444
No 6
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=6.42 E-value=1.4e+02 Score=26.60 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=10.9
Q ss_pred HHHHhhccCCCCCCCCC
Q 043575 119 FLMFYLPLLEPDMSTED 135 (330)
Q Consensus 119 ~lm~ylPlLe~~~~~ee 135 (330)
+.-+.-|.++|.-+-|+
T Consensus 140 v~~~~~pFI~WL~EAEE 156 (208)
T 2iu1_A 140 IRVKAEPFIKWLKEAEE 156 (208)
T ss_dssp HHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcccc
Confidence 34455688998866444
No 7
>4dhx_A Protein GANP, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=6.30 E-value=7.8e+02 Score=19.12 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhccHHHHHHHh
Q 043575 160 VKQIVRETTVVTTRRILE---RLAVHYVSQRMAWKLL 193 (330)
Q Consensus 160 vk~~~RE~sV~tTRR~LE---riav~~~s~R~A~KLl 193 (330)
++.-+||++..=.|..+| +.-+.+|+......|+
T Consensus 21 v~E~v~et~s~Elk~Ave~dq~~RvARCsE~VC~~lv 57 (75)
T 4dhx_A 21 MMEFVRETCSQELKNAVETDQRVRVARCCEDVCAHLV 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666789999999999998 7777789988888775
No 8
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.64 E-value=28 Score=23.47 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=8.3
Q ss_pred cccceeeeeee
Q 043575 312 LAGPIVVSFCL 322 (330)
Q Consensus 312 ~aGp~~v~~~~ 322 (330)
.+||++||+.+
T Consensus 8 IIaPivVGvvl 18 (33)
T 2kv5_A 8 VIAPIFVGLVL 18 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35899998865
No 9
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A {Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A* 1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A* 1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A* 1pa9_A* 1yts_A
Probab=5.50 E-value=2.4e+02 Score=25.67 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=12.3
Q ss_pred CCCCeeecccCcccCC
Q 043575 54 PKIPVAYCDAGAAITE 69 (330)
Q Consensus 54 ~~~~va~CdA~~~~~d 69 (330)
.+++|-||.||+|=+-
T Consensus 234 ~~piVVHCSAGvGRTG 249 (306)
T 1lyv_A 234 KLRPVIHSRAGVGRTA 249 (306)
T ss_dssp SSCCEEECSSSSSHHH
T ss_pred CCCcEEEcCCCCchhH
Confidence 3467999999997544
No 10
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=5.31 E-value=5.9e+02 Score=19.55 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Q 043575 158 KSVKQIVRETTVVTTRRILERLAVHYVSQRMAWKLL 193 (330)
Q Consensus 158 kSvk~~~RE~sV~tTRR~LEriav~~~s~R~A~KLl 193 (330)
+|+..|+++..+-..+++||.--+-.+|++-...++
T Consensus 30 ~s~s~Fv~~aa~~~A~~vi~~~~~~~Ls~~~~~~f~ 65 (90)
T 1y9b_A 30 SSINSFVLNAAIEKAKQVIEREQALKLSQADAVLLM 65 (90)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcceeeeCHHHHHHHH
Done!