Query 043575
Match_columns 330
No_of_seqs 36 out of 38
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 10:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043575.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043575hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wtya_ a.24.16.2 (A:) Probabl 10.2 56 0.0041 24.8 1.9 42 186-234 34-75 (116)
2 d1joga_ a.24.16.2 (A:) Hypothe 8.5 2.4E+02 0.017 21.4 5.1 49 184-234 46-94 (135)
3 d1l3la1 a.4.6.2 (A:170-234) Qu 7.4 95 0.0069 20.4 1.9 34 173-206 10-49 (65)
4 d1a04a1 a.4.6.2 (A:150-216) Ni 6.9 1.3E+02 0.0094 19.8 2.4 34 173-206 12-51 (67)
5 d1fsea_ a.4.6.2 (A:) Germinati 6.0 1.3E+02 0.0091 19.7 1.9 34 173-206 10-49 (67)
6 d2gfna2 a.121.1.1 (A:81-199) P 5.7 2.9E+02 0.021 20.8 4.1 48 107-173 18-65 (119)
7 d2uubc2 d.53.1.1 (C:107-207) R 5.2 1.8E+02 0.013 21.3 2.5 25 205-229 19-43 (101)
8 d1fi4a1 d.14.1.5 (A:3-190) Mev 5.1 1.9E+02 0.014 23.2 2.9 11 42-52 150-160 (188)
9 d1yioa1 a.4.6.2 (A:131-200) Re 4.5 1.8E+02 0.013 19.3 1.9 33 173-205 18-56 (70)
10 d1p4wa_ a.4.6.2 (A:) Transcrip 4.2 2.6E+02 0.019 19.1 2.7 33 173-205 28-66 (87)
No 1
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]}
Probab=10.22 E-value=56 Score=24.78 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=27.1
Q ss_pred HHHHHHHhhcchhhHHHhhhhCCChhHHHHHHHHHHHHHhHHhhhhHHH
Q 043575 186 QRMAWKLLKDVPKSATRKAQRGLPTTVYFFRVSRTTLRGHFLGVAASWI 234 (330)
Q Consensus 186 ~R~A~KLlKDv~kSA~RKa~R~~s~~~~a~~v~rTt~Rah~LgvaA~wv 234 (330)
-.++||++||+-+. .-..-+ ..-.+.|.++....++-.-.|+
T Consensus 34 ~El~WK~lK~~L~~--~g~~~~-----spr~~~r~A~~~glI~d~~~W~ 75 (116)
T d1wtya_ 34 FELAWKTLKTFLEL--QGLEAR-----SPRAAIRGAFQVGLLPEDPFWL 75 (116)
T ss_dssp HHHHHHHHHHHHHH--HTCCCS-----SHHHHHHHHHHHTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHH--cCCccC-----CHHHHHHHHHHcCCCCCHHHHH
Confidence 34899999999853 212212 2234567888888777766674
No 2
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]}
Probab=8.52 E-value=2.4e+02 Score=21.43 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=27.6
Q ss_pred ccHHHHHHHhhcchhhHHHhhhhCCChhHHHHHHHHHHHHHhHHhhhhHHH
Q 043575 184 VSQRMAWKLLKDVPKSATRKAQRGLPTTVYFFRVSRTTLRGHFLGVAASWI 234 (330)
Q Consensus 184 ~s~R~A~KLlKDv~kSA~RKa~R~~s~~~~a~~v~rTt~Rah~LgvaA~wv 234 (330)
++-.++||++|++-+.--=.... . -....--+.|.++....++---.|+
T Consensus 46 ~t~ElaWK~lK~~L~~~g~~~~~-~-~~~spr~~~r~A~~~glI~d~e~W~ 94 (135)
T d1joga_ 46 FVYELSLKMMKRQLQQDAINTDD-I-GAYGFKDILREALRFGLIGDMSKWV 94 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCC-T-TSCCHHHHHHHHHHTTSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-c-cccCHHHHHHHHHHcCCCCCHHHHH
Confidence 36689999999986532110000 0 0001223557788877777766665
No 3
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.40 E-value=95 Score=20.37 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhccHHHHHHH------hhcchhhHHHhhhh
Q 043575 173 RRILERLAVHYVSQRMAWKL------LKDVPKSATRKAQR 206 (330)
Q Consensus 173 RR~LEriav~~~s~R~A~KL------lKDv~kSA~RKa~R 206 (330)
+.+|+.++.......+|.+| +|.--+..++|-.=
T Consensus 10 ~~vl~l~~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv 49 (65)
T d1l3la1 10 ATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 49 (65)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46788888888888888888 55555556666543
No 4
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=6.92 E-value=1.3e+02 Score=19.78 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhccHHHHHHH------hhcchhhHHHhhhh
Q 043575 173 RRILERLAVHYVSQRMAWKL------LKDVPKSATRKAQR 206 (330)
Q Consensus 173 RR~LEriav~~~s~R~A~KL------lKDv~kSA~RKa~R 206 (330)
+++|..++.......+|++| +|.--++.++|-.=
T Consensus 12 ~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv 51 (67)
T d1a04a1 12 RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL 51 (67)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 56788888888888888888 45555555555543
No 5
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=5.97 E-value=1.3e+02 Score=19.73 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccHHHHHHH------hhcchhhHHHhhhh
Q 043575 173 RRILERLAVHYVSQRMAWKL------LKDVPKSATRKAQR 206 (330)
Q Consensus 173 RR~LEriav~~~s~R~A~KL------lKDv~kSA~RKa~R 206 (330)
+++|+.++..+....+|.+| +|..-+..++|..=
T Consensus 10 ~~vl~l~~~G~s~~eIA~~L~is~~TV~~~~~~i~~Kl~v 49 (67)
T d1fsea_ 10 REVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGV 49 (67)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHccCCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46788888888888888887 44444555555543
No 6
>d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=5.74 E-value=2.9e+02 Score=20.78 Aligned_cols=48 Identities=35% Similarity=0.540 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 043575 107 ELRALAMTSLRSFLMFYLPLLEPDMSTEDDDDDFPQDSPEQRRLDLVVPFKKSVKQIVRETTVVTTR 173 (330)
Q Consensus 107 ~pr~la~t~vRs~lm~ylPlLe~~~~~eedddd~~~d~~e~~~~Dlv~P~~kSvk~~~RE~sV~tTR 173 (330)
.-|.++|| |-|++||..= . . |+ . -+-+ +..|-.-|+.++||+.+-.-|
T Consensus 18 derrlamt--rvflffyaeg-------a--~---ee--~--ar~e-ia~flarwr~vvr~~v~~aq~ 65 (119)
T d2gfna2 18 DERRLAMT--RVFLFFYAEG-------A--A---EE--T--ARGE-IAAFLARWRGVVRESVVAAQR 65 (119)
T ss_dssp SHHHHHHH--HHHHHHHHHC------------------C--CSHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH--HHHHHhhhcc-------c--h---HH--H--HHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 45788987 6688888621 0 0 01 0 1112 566777899999998665433
No 7
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.20 E-value=1.8e+02 Score=21.29 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=16.2
Q ss_pred hhCCChhHHHHHHHHHHHHHhHHhh
Q 043575 205 QRGLPTTVYFFRVSRTTLRGHFLGV 229 (330)
Q Consensus 205 ~R~~s~~~~a~~v~rTt~Rah~Lgv 229 (330)
.|++++-..+....++.|.+.+.|+
T Consensus 19 er~~~fRra~~~~l~~~m~~ga~Gi 43 (101)
T d2uubc2 19 ERRFAVRRAIKQAVQRVMESGAKGA 43 (101)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCSEE
T ss_pred HccchHHHHHHHHHHHhhhcCccEE
Confidence 4556666666666777777766665
No 8
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.08 E-value=1.9e+02 Score=23.25 Aligned_cols=11 Identities=45% Similarity=0.582 Sum_probs=8.6
Q ss_pred cCcchhhhccC
Q 043575 42 AAPFASRFLFG 52 (330)
Q Consensus 42 ~~~~as~~~fg 52 (330)
|.+-|+|-+||
T Consensus 150 GSGSAcRSi~G 160 (188)
T d1fi4a1 150 GSGSACRSLFG 160 (188)
T ss_dssp HHGGGGGGGSS
T ss_pred hccchhhhhcC
Confidence 55677888998
No 9
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=4.50 E-value=1.8e+02 Score=19.30 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhccHHHHHHH------hhcchhhHHHhhh
Q 043575 173 RRILERLAVHYVSQRMAWKL------LKDVPKSATRKAQ 205 (330)
Q Consensus 173 RR~LEriav~~~s~R~A~KL------lKDv~kSA~RKa~ 205 (330)
+++|..++-.+-...+|.+| +|.--++.++|-.
T Consensus 18 ~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klg 56 (70)
T d1yioa1 18 QQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 56 (70)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 46777888888888888888 4444455555544
No 10
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=4.21 E-value=2.6e+02 Score=19.15 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccHHHHHHH------hhcchhhHHHhhh
Q 043575 173 RRILERLAVHYVSQRMAWKL------LKDVPKSATRKAQ 205 (330)
Q Consensus 173 RR~LEriav~~~s~R~A~KL------lKDv~kSA~RKa~ 205 (330)
+++|+.++-.+-...+|.+| +|..-++.++|-.
T Consensus 28 ~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~ 66 (87)
T d1p4wa_ 28 SEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 66 (87)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 56788888888888888888 5666666777754
Done!