BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043576
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
          Length = 378

 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 73  KVVGKFSAARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAVVLGLMIGYLVFRSESDDV 132
           +++ + +AA IA    +G++  VG    + I S  GG F   +L +  G    +S + D 
Sbjct: 168 RIINEPTAAAIA----YGLDKAVGAERNVLIFSLGGGTFDVSILTIEDGIFEVKSTAGDT 223

Query: 133 TL 134
            L
Sbjct: 224 HL 225


>pdb|3K5W|A Chain A, Crystal Structure Of A Carbohydrate Kinase (Yjef
           Family)from Helicobacter Pylori
          Length = 475

 Score = 26.6 bits (57), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 63  ADVETPLLQRKVV--GKFSAARIAGTALFGINSGVGYLLMLAIMSFNGGV 110
           +D++ PL  +K    G +  A +    L G +SG G L  L+ +SF  GV
Sbjct: 219 SDLKLPLRDKKNAHKGDYGHAHV----LLGKHSGAGLLSALSALSFGSGV 264


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.143    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,722,322
Number of Sequences: 62578
Number of extensions: 127131
Number of successful extensions: 309
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 3
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)