Query 043576
Match_columns 143
No_of_seqs 104 out of 731
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3386 Copper transporter [In 100.0 1.4E-39 3.1E-44 240.7 15.9 140 1-142 15-154 (155)
2 PF04145 Ctr: Ctr copper trans 100.0 6.6E-39 1.4E-43 232.9 4.1 124 2-125 1-144 (144)
3 PF11446 DUF2897: Protein of u 93.0 0.076 1.6E-06 32.8 1.9 27 104-130 1-27 (55)
4 PF03672 UPF0154: Uncharacteri 73.6 3.1 6.7E-05 26.4 2.1 19 109-127 2-20 (64)
5 COG3763 Uncharacterized protei 65.7 6.9 0.00015 25.3 2.5 21 108-128 8-28 (71)
6 COG2991 Uncharacterized protei 65.3 5.9 0.00013 25.8 2.1 21 107-127 7-27 (77)
7 PRK01844 hypothetical protein; 59.7 10 0.00022 24.6 2.5 17 110-126 10-26 (72)
8 PF02512 UK: Virulence determi 58.6 4.8 0.0001 26.8 0.8 9 135-143 62-70 (96)
9 PF14012 DUF4229: Protein of u 56.8 22 0.00048 22.6 3.7 46 83-131 6-57 (69)
10 PF11772 EpuA: DNA-directed RN 53.7 7.3 0.00016 23.2 1.0 19 110-128 8-26 (47)
11 PRK00523 hypothetical protein; 53.5 15 0.00032 23.9 2.5 17 110-126 11-27 (72)
12 PF06376 DUF1070: Protein of u 53.2 11 0.00025 20.9 1.6 11 94-104 17-27 (34)
13 PRK11431 multidrug efflux syst 46.2 95 0.0021 21.3 8.9 46 85-130 31-83 (105)
14 PRK13664 hypothetical protein; 42.3 72 0.0016 19.9 4.1 26 25-50 5-30 (62)
15 PF06612 DUF1146: Protein of u 40.7 31 0.00067 20.4 2.3 12 37-48 4-15 (48)
16 TIGR02327 int_mem_ywzB conserv 38.6 29 0.00062 22.2 2.0 17 110-126 40-56 (68)
17 PRK00753 psbL photosystem II r 36.8 54 0.0012 18.6 2.7 20 23-42 15-34 (39)
18 PF13829 DUF4191: Domain of un 36.1 1.1E+02 0.0024 24.1 5.4 37 94-130 40-76 (224)
19 PRK10929 putative mechanosensi 35.8 4.3E+02 0.0093 25.9 11.0 44 80-123 871-916 (1109)
20 PRK02898 cobalt transport prot 35.8 25 0.00053 24.3 1.5 26 83-124 65-90 (100)
21 PHA00024 IX minor coat protein 35.1 62 0.0014 17.8 2.7 22 104-125 2-23 (33)
22 CHL00038 psbL photosystem II p 34.9 63 0.0014 18.2 2.8 20 23-42 14-33 (38)
23 PF01307 Plant_vir_prot: Plant 33.8 37 0.0008 23.5 2.1 30 109-138 9-38 (104)
24 PRK10255 PTS system N-acetyl g 32.8 74 0.0016 29.0 4.4 33 92-124 75-112 (648)
25 PF06127 DUF962: Protein of un 32.6 1.5E+02 0.0033 19.7 5.6 28 101-128 37-68 (95)
26 PRK10650 multidrug efflux syst 31.2 1.8E+02 0.0039 20.1 8.9 46 85-130 37-89 (109)
27 COG2076 EmrE Membrane transpor 30.6 1.9E+02 0.0041 20.1 8.5 46 85-130 32-84 (106)
28 PF12273 RCR: Chitin synthesis 30.2 58 0.0013 22.9 2.8 8 30-37 7-14 (130)
29 PF02419 PsbL: PsbL protein; 28.4 69 0.0015 18.0 2.2 20 23-42 13-32 (37)
30 PRK02919 oxaloacetate decarbox 28.3 1.4E+02 0.0031 19.6 4.2 23 96-119 10-32 (82)
31 COG0472 Rfe UDP-N-acetylmuramy 27.8 1E+02 0.0023 25.3 4.2 26 106-131 188-213 (319)
32 PF10031 DUF2273: Small integr 27.4 1.4E+02 0.0031 17.8 5.2 30 94-123 15-48 (51)
33 PF03818 MadM: Malonate/sodium 27.0 52 0.0011 20.6 1.8 13 111-123 43-55 (60)
34 COG3256 NorB Nitric oxide redu 26.4 2.7E+02 0.0059 25.5 6.7 77 21-101 200-276 (717)
35 COG5336 Uncharacterized protei 25.9 2.4E+02 0.0053 19.9 7.7 49 80-130 49-97 (116)
36 PF08611 DUF1774: Fungal prote 24.4 2E+02 0.0043 19.8 4.4 10 62-71 88-97 (97)
37 PF07291 MauE: Methylamine uti 24.3 3.1E+02 0.0068 20.6 7.0 59 80-142 49-107 (184)
38 PRK09541 emrE multidrug efflux 24.2 2.5E+02 0.0053 19.3 8.6 45 86-130 33-84 (110)
39 PF13980 UPF0370: Uncharacteri 23.8 1.3E+02 0.0029 18.8 3.1 19 32-50 11-29 (63)
40 PRK10452 multidrug efflux syst 22.7 2.8E+02 0.0061 19.5 8.4 45 86-130 33-84 (120)
41 PF06084 Cytomega_TRL10: Cytom 22.3 72 0.0016 22.8 2.0 33 108-140 62-96 (150)
42 PF07219 HemY_N: HemY protein 22.2 1.7E+02 0.0038 19.7 3.9 22 12-33 3-24 (108)
43 TIGR02230 ATPase_gene1 F0F1-AT 22.1 2.7E+02 0.0059 19.1 5.9 14 109-122 76-89 (100)
44 PRK02935 hypothetical protein; 21.9 1.8E+02 0.0039 20.4 3.8 33 96-132 36-68 (110)
45 PF14362 DUF4407: Domain of un 21.7 1.9E+02 0.004 23.2 4.6 27 103-129 38-64 (301)
46 COG3086 RseC Positive regulato 21.7 3.2E+02 0.0069 20.2 5.3 42 85-129 78-125 (150)
47 PF08114 PMP1_2: ATPase proteo 21.6 1E+02 0.0022 17.9 2.1 30 25-54 8-37 (43)
48 PF09997 DUF2238: Predicted me 21.3 1E+02 0.0022 22.6 2.7 37 15-51 80-117 (143)
49 PF12732 YtxH: YtxH-like prote 20.9 1.1E+02 0.0023 19.3 2.5 19 108-126 3-21 (74)
No 1
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=240.68 Aligned_cols=140 Identities=35% Similarity=0.485 Sum_probs=114.7
Q ss_pred CeeeEEEcccceeEEecCceeCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccccCcccH
Q 043576 1 MMHMTFYWGRQVTLLFDFWRTDSWPSYALTLLACFLFSAFYQYLEDRRVRLNRIAVGQKPAIADVETPLLQRKVVGKFSA 80 (143)
Q Consensus 1 mM~M~F~~~~~~~lLF~~W~~~s~~~~~~s~i~vf~la~~~e~l~~~r~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (143)
||.|+|||++++++||++|+++|+++|+++|+++|++++++|+||+.|+.++++.+.+.++.++.+.|..+++ +...+.
T Consensus 15 ~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~ 93 (155)
T KOG3386|consen 15 MMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPS-KLLNSA 93 (155)
T ss_pred ceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcc-hhhhhH
Confidence 6899999999999999999999999999999999999999999999999988775332211111222221111 111157
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccccCCCcccccCCCccc
Q 043576 81 ARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAVVLGLMIGYLVFRSESDDVTLVVDNPCAC 142 (143)
Q Consensus 81 ~~~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aVvlG~~~G~~~f~~~~~~~~~~~~~~c~~ 142 (143)
.|++|+++|.+|+++||+|||++||||+|+++||++|+++||++|+.+.. .+..++++|+|
T Consensus 94 ~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~-~~~~~~~~c~~ 154 (155)
T KOG3386|consen 94 SHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF-TPTSEAEHCHA 154 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc-cCCCccccccC
Confidence 89999999999999999999999999999999999999999999999977 44446777776
No 2
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=100.00 E-value=6.6e-39 Score=232.94 Aligned_cols=124 Identities=31% Similarity=0.556 Sum_probs=58.6
Q ss_pred eeeEEEccc-ceeEEecCceeCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----C----CCCCC----c-
Q 043576 2 MHMTFYWGR-QVTLLFDFWRTDSWPSYALTLLACFLFSAFYQYLEDRRVRLNRIAVGQKP----A----IADVE----T- 67 (143)
Q Consensus 2 M~M~F~~~~-~~~lLF~~W~~~s~~~~~~s~i~vf~la~~~e~l~~~r~~l~~~~~~~~~----~----~~~~~----~- 67 (143)
|+|+|||++ ++++||++|+++|.++|+++|+++|++|+++|++|.+|++++++...+.. + .++.+ +
T Consensus 1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T PF04145_consen 1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS 80 (144)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence 899999998 89999999999999999999999999999999999999999887632110 0 00000 0
Q ss_pred -cc-----ccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhc
Q 043576 68 -PL-----LQRKVVGKFSAARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAVVLGLMIGYLVF 125 (143)
Q Consensus 68 -~~-----l~~~~~~~~~~~~~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aVvlG~~~G~~~f 125 (143)
+. ......+.++..|++|+++|++|++++|+|||+|||||+|+|+||++|.++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F 144 (144)
T PF04145_consen 81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF 144 (144)
T ss_dssp ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence 00 00001123468999999999999999999999999999999999999999999998
No 3
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=92.97 E-value=0.076 Score=32.81 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.0
Q ss_pred HhhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 104 MSFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 104 MTyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
||.|+|+++.+++|..+|...-=+.+.
T Consensus 1 ~~~~~wlIIviVlgvIigNia~LK~sA 27 (55)
T PF11446_consen 1 STWNPWLIIVIVLGVIIGNIAALKYSA 27 (55)
T ss_pred CcchhhHHHHHHHHHHHhHHHHHHHhc
Confidence 689999999999999999998766655
No 4
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=73.56 E-value=3.1 Score=26.45 Aligned_cols=19 Identities=32% Similarity=0.756 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 043576 109 GVFLAVVLGLMIGYLVFRS 127 (143)
Q Consensus 109 ~i~~aVvlG~~~G~~~f~~ 127 (143)
.++++.++|..+|+|+-.+
T Consensus 2 ~iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARK 20 (64)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5788999999999998554
No 5
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.67 E-value=6.9 Score=25.31 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhhhhcccc
Q 043576 108 GGVFLAVVLGLMIGYLVFRSE 128 (143)
Q Consensus 108 ~~i~~aVvlG~~~G~~~f~~~ 128 (143)
.++.+|.++|...|||+-...
T Consensus 8 l~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999987543
No 6
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.34 E-value=5.9 Score=25.82 Aligned_cols=21 Identities=43% Similarity=0.808 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHhhhhccc
Q 043576 107 NGGVFLAVVLGLMIGYLVFRS 127 (143)
Q Consensus 107 N~~i~~aVvlG~~~G~~~f~~ 127 (143)
..++|+.|++|.++||.+=..
T Consensus 7 tFg~Fllvi~gMsiG~I~krk 27 (77)
T COG2991 7 TFGIFLLVIAGMSIGYIFKRK 27 (77)
T ss_pred HHHHHHHHHHHHhHhhheecc
Confidence 357899999999999976543
No 7
>PRK01844 hypothetical protein; Provisional
Probab=59.65 E-value=10 Score=24.64 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhcc
Q 043576 110 VFLAVVLGLMIGYLVFR 126 (143)
Q Consensus 110 i~~aVvlG~~~G~~~f~ 126 (143)
++++.++|..+|+|+-.
T Consensus 10 ~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 10 GVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788899999998854
No 8
>PF02512 UK: Virulence determinant
Probab=58.58 E-value=4.8 Score=26.79 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=7.1
Q ss_pred ccCCCcccC
Q 043576 135 VVDNPCACA 143 (143)
Q Consensus 135 ~~~~~c~~~ 143 (143)
..|.||||+
T Consensus 62 gndvpcccp 70 (96)
T PF02512_consen 62 GNDVPCCCP 70 (96)
T ss_pred CCCCCccCC
Confidence 368899995
No 9
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=56.77 E-value=22 Score=22.65 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHhhhhccccCCC
Q 043576 83 IAGTALFGINSGVGYLLMLAIMSFN------GGVFLAVVLGLMIGYLVFRSESDD 131 (143)
Q Consensus 83 ~~~~~l~~~q~~l~Y~LMLivMTyN------~~i~~aVvlG~~~G~~~f~~~~~~ 131 (143)
..|..+...-.. .++++..... ....+|++++..++|++|.+.+++
T Consensus 6 l~Rl~lfv~~~~---vi~~v~~~~~~~~p~~~~~l~A~vis~~lS~~ll~~~R~~ 57 (69)
T PF14012_consen 6 LARLGLFVVLFA---VIWLVGLLIGVEVPLLVAALLALVISMPLSYVLLRRLRDR 57 (69)
T ss_pred HHHHHHHHHHHH---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444333 3556666555 678999999999999999987763
No 10
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=53.74 E-value=7.3 Score=23.18 Aligned_cols=19 Identities=47% Similarity=0.775 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 043576 110 VFLAVVLGLMIGYLVFRSE 128 (143)
Q Consensus 110 i~~aVvlG~~~G~~~f~~~ 128 (143)
.+++.++|..+||-+.|..
T Consensus 8 ~~~~l~iGlmIGY~viG~G 26 (47)
T PF11772_consen 8 AILALAIGLMIGYGVIGDG 26 (47)
T ss_pred HHHHHHHHHHeeeeeeCCC
Confidence 5678899999999999876
No 11
>PRK00523 hypothetical protein; Provisional
Probab=53.53 E-value=15 Score=23.89 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhhcc
Q 043576 110 VFLAVVLGLMIGYLVFR 126 (143)
Q Consensus 110 i~~aVvlG~~~G~~~f~ 126 (143)
++++.++|..+|+|+-.
T Consensus 11 ~i~~li~G~~~Gffiar 27 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678889999988844
No 12
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=53.20 E-value=11 Score=20.87 Aligned_cols=11 Identities=45% Similarity=1.065 Sum_probs=8.6
Q ss_pred HHHHHHHHHHH
Q 043576 94 GVGYLLMLAIM 104 (143)
Q Consensus 94 ~l~Y~LMLivM 104 (143)
.++|+||+++-
T Consensus 17 giay~Lm~~Al 27 (34)
T PF06376_consen 17 GIAYMLMLVAL 27 (34)
T ss_pred HHHHHHHHHHH
Confidence 67899998763
No 13
>PRK11431 multidrug efflux system protein; Provisional
Probab=46.20 E-value=95 Score=21.30 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 85 GTALFGINSGVGYLLMLAIM-------SFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 85 ~~~l~~~q~~l~Y~LMLivM-------TyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
-+++..+-..+||.++-.+| .|-.|--+.++.-..+|.++|+.+-+
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~ 83 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34444556677777776666 68888889999999999999998754
No 14
>PRK13664 hypothetical protein; Provisional
Probab=42.25 E-value=72 Score=19.89 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043576 25 PSYALTLLACFLFSAFYQYLEDRRVR 50 (143)
Q Consensus 25 ~~~~~s~i~vf~la~~~e~l~~~r~~ 50 (143)
..|...+++++++|++.-++|.+|+.
T Consensus 5 adyWWilill~lvG~i~N~iK~l~Rv 30 (62)
T PRK13664 5 AKYWWILVLVFLVGVLLNVIKDLKRV 30 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777789999999999999999874
No 15
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=40.74 E-value=31 Score=20.45 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 043576 37 FSAFYQYLEDRR 48 (143)
Q Consensus 37 la~~~e~l~~~r 48 (143)
+++.+-++..+|
T Consensus 4 I~la~~aLq~l~ 15 (48)
T PF06612_consen 4 IALAFWALQSLR 15 (48)
T ss_pred HHHHHHHHHhcC
Confidence 344444555543
No 16
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=38.55 E-value=29 Score=22.24 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhcc
Q 043576 110 VFLAVVLGLMIGYLVFR 126 (143)
Q Consensus 110 i~~aVvlG~~~G~~~f~ 126 (143)
+++|+.+|..++.|+.+
T Consensus 40 vllaIalGylvs~FfL~ 56 (68)
T TIGR02327 40 VLIAIALGYTVSHFFLE 56 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777777654
No 17
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=36.81 E-value=54 Score=18.58 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 043576 23 SWPSYALTLLACFLFSAFYQ 42 (143)
Q Consensus 23 s~~~~~~s~i~vf~la~~~e 42 (143)
+..+.++.++.+|.+|++..
T Consensus 15 NRTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 15 NRTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 45678888899999998764
No 18
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=36.10 E-value=1.1e+02 Score=24.11 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 94 GVGYLLMLAIMSFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 94 ~l~Y~LMLivMTyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
.+..++.++.=+.=.|+++++.+|..++.++|+++..
T Consensus 40 ~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 40 AVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554455567899999999999999998753
No 19
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=35.83 E-value=4.3e+02 Score=25.86 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHhhh
Q 043576 80 AARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAVV--LGLMIGYL 123 (143)
Q Consensus 80 ~~~~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aVv--lG~~~G~~ 123 (143)
...++.+++..+-..++.+..|-.+-+|+.-+.+++ +|.++|+.
T Consensus 871 ~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfA 916 (1109)
T PRK10929 871 TGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG 916 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 455666666666667777777777778766554443 44444443
No 20
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=35.78 E-value=25 Score=24.33 Aligned_cols=26 Identities=27% Similarity=0.649 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q 043576 83 IAGTALFGINSGVGYLLMLAIMSFNGGVFLAVVLGLMIGYLV 124 (143)
Q Consensus 83 ~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aVvlG~~~G~~~ 124 (143)
=+.++|+.+|..++ |.++|..+||.-
T Consensus 65 EiESLLFaLQAAiG----------------AgiIgY~lG~~~ 90 (100)
T PRK02898 65 EIESLLFALQAALG----------------AGIIGYILGYYK 90 (100)
T ss_pred hHHHHHHHHHHHHh----------------hhhhheeeeehh
Confidence 36899999999877 667777777764
No 21
>PHA00024 IX minor coat protein
Probab=35.12 E-value=62 Score=17.79 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=16.5
Q ss_pred HhhhhHHHHHHHHHHHHhhhhc
Q 043576 104 MSFNGGVFLAVVLGLMIGYLVF 125 (143)
Q Consensus 104 MTyN~~i~~aVvlG~~~G~~~f 125 (143)
|.+=++.|-|-++|-++||-+.
T Consensus 2 ~~~l~~ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 2 MSYLGYFFGAYILGWALFYGIL 23 (33)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888654
No 22
>CHL00038 psbL photosystem II protein L
Probab=34.91 E-value=63 Score=18.25 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 043576 23 SWPSYALTLLACFLFSAFYQ 42 (143)
Q Consensus 23 s~~~~~~s~i~vf~la~~~e 42 (143)
+..+.++.++.+|.+|++..
T Consensus 14 NRTSLy~GLLlifvl~vlfs 33 (38)
T CHL00038 14 NRTSLYWGLLLIFVLAVLFS 33 (38)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 45678888899999998764
No 23
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=33.75 E-value=37 Score=23.49 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhhhccccCCCcccccCC
Q 043576 109 GVFLAVVLGLMIGYLVFRSESDDVTLVVDN 138 (143)
Q Consensus 109 ~i~~aVvlG~~~G~~~f~~~~~~~~~~~~~ 138 (143)
+.++++++|.+++-+++-..+...+.+.|+
T Consensus 9 k~~l~~aiG~~lal~i~~ltr~tlPhvGDn 38 (104)
T PF01307_consen 9 KSYLAAAIGVSLALIIFTLTRSTLPHVGDN 38 (104)
T ss_pred cchhHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 467788888888888888777666665554
No 24
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=32.84 E-value=74 Score=28.99 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHhhhh
Q 043576 92 NSGVGYLLMLAIM-----SFNGGVFLAVVLGLMIGYLV 124 (143)
Q Consensus 92 q~~l~Y~LMLivM-----TyN~~i~~aVvlG~~~G~~~ 124 (143)
.-.++|++|..+| +.|.++|..+++|...++.-
T Consensus 75 a~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~l~ 112 (648)
T PRK10255 75 AGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAY 112 (648)
T ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHHHH
Confidence 3456777776664 45889999999999988743
No 25
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=32.58 E-value=1.5e+02 Score=19.71 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=16.2
Q ss_pred HHHHhhhhHHHHHHHH----HHHHhhhhcccc
Q 043576 101 LAIMSFNGGVFLAVVL----GLMIGYLVFRSE 128 (143)
Q Consensus 101 LivMTyN~~i~~aVvl----G~~~G~~~f~~~ 128 (143)
+...+-+.++.+++.+ ...+|+++|+..
T Consensus 37 ~~~~~~~~~~~l~~~~~g~~~q~~GH~~~E~~ 68 (95)
T PF06127_consen 37 LLLARIPWWLALAVFVVGWGLQFIGHFFFEKN 68 (95)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 3444445555555433 246788888875
No 26
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=31.20 E-value=1.8e+02 Score=20.10 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 85 GTALFGINSGVGYLLMLAIM-------SFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 85 ~~~l~~~q~~l~Y~LMLivM-------TyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
-++...+-..+||.++-.+| .|-.|--+.++.-..+|.++|+..-+
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~ 89 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN 89 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 35556667777888887776 67788888888888999999988644
No 27
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=30.56 E-value=1.9e+02 Score=20.11 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 85 GTALFGINSGVGYLLMLAIM-------SFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 85 ~~~l~~~q~~l~Y~LMLivM-------TyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
.+++-.+-..+||.+.-.+| .|-+|--+.++....+|.++|+.+-+
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~ 84 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS 84 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence 34555555566666654444 57888889999999999999988754
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.21 E-value=58 Score=22.91 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043576 30 TLLACFLF 37 (143)
Q Consensus 30 s~i~vf~l 37 (143)
.+|+++++
T Consensus 7 iii~~i~l 14 (130)
T PF12273_consen 7 IIIVAILL 14 (130)
T ss_pred HHHHHHHH
Confidence 33333333
No 29
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=28.38 E-value=69 Score=18.03 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=14.8
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 043576 23 SWPSYALTLLACFLFSAFYQ 42 (143)
Q Consensus 23 s~~~~~~s~i~vf~la~~~e 42 (143)
+..+.++.++.+|+++++.-
T Consensus 13 NRTSLY~GLllifvl~vLFs 32 (37)
T PF02419_consen 13 NRTSLYWGLLLIFVLAVLFS 32 (37)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHhh
Confidence 34567778889999998764
No 30
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=28.29 E-value=1.4e+02 Score=19.65 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Q 043576 96 GYLLMLAIMSFNGGVFLAVVLGLM 119 (143)
Q Consensus 96 ~Y~LMLivMTyN~~i~~aVvlG~~ 119 (143)
+--||++-|.+ +.+|+++++...
T Consensus 10 gl~lMvlGMg~-VfvFL~lLI~~i 32 (82)
T PRK02919 10 GFTLMFLGMGF-VLAFLFLLIFAI 32 (82)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45678888888 788888887764
No 31
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=27.85 E-value=1e+02 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHhhhhccccCCC
Q 043576 106 FNGGVFLAVVLGLMIGYLVFRSESDD 131 (143)
Q Consensus 106 yN~~i~~aVvlG~~~G~~~f~~~~~~ 131 (143)
+...++.+.++|+.+||+.|+...++
T Consensus 188 ~~~~~~~~al~ga~LGFL~~N~~PAk 213 (319)
T COG0472 188 GELALICAALAGACLGFLWFNFYPAK 213 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCChhh
Confidence 45558899999999999999998654
No 32
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.43 E-value=1.4e+02 Score=17.78 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhH----HHHHHHHHHHHhhh
Q 043576 94 GVGYLLMLAIMSFNGG----VFLAVVLGLMIGYL 123 (143)
Q Consensus 94 ~l~Y~LMLivMTyN~~----i~~aVvlG~~~G~~ 123 (143)
.++.++=++++++-.| +++.+++|..+|..
T Consensus 15 ~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~ 48 (51)
T PF10031_consen 15 LIGLILALLILTFGFWKTLFILLFAAIGYYIGKY 48 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777666 56677778888765
No 33
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.97 E-value=52 Score=20.59 Aligned_cols=13 Identities=46% Similarity=1.012 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhh
Q 043576 111 FLAVVLGLMIGYL 123 (143)
Q Consensus 111 ~~aVvlG~~~G~~ 123 (143)
-+|+++|+.++|+
T Consensus 43 AIAI~lGLvLAy~ 55 (60)
T PF03818_consen 43 AIAIVLGLVLAYI 55 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777664
No 34
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=26.38 E-value=2.7e+02 Score=25.54 Aligned_cols=77 Identities=16% Similarity=0.031 Sum_probs=40.1
Q ss_pred eCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 043576 21 TDSWPSYALTLLACFLFSAFYQYLEDRRVRLNRIAVGQKPAIADVETPLLQRKVVGKFSAARIAGTALFGINSGVGYLLM 100 (143)
Q Consensus 21 ~~s~~~~~~s~i~vf~la~~~e~l~~~r~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~q~~l~Y~LM 100 (143)
+.+...+..+...+++|.+..-.+.....+.+++++. |.++ +.|.++..+...-...-.....+..+|..++++.|
T Consensus 200 ~~~~~~~~wsi~svilLl~~i~l~~wv~~~~~dhee~-~~~~---~~P~~k~~sQkva~lyf~~A~~Lf~vQiLlG~~~~ 275 (717)
T COG3256 200 PPTTVNYMWSITSVILLLVGIALLLWVYLKLTDHEEV-PRPS---EDPPLKYQSQKVALLYFFLAVALFVVQILLGGLTA 275 (717)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-cccC---CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 3345567777777777777776666666555544311 1111 11211110000001233445688888988888766
Q ss_pred H
Q 043576 101 L 101 (143)
Q Consensus 101 L 101 (143)
.
T Consensus 276 h 276 (717)
T COG3256 276 H 276 (717)
T ss_pred e
Confidence 3
No 35
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.91 E-value=2.4e+02 Score=19.88 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 80 AARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 80 ~~~~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
...++..++. -+.++|+|==.+=|=-+++++-.++|.+.|.+..-+...
T Consensus 49 ssefIsGilV--Ga~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rsag 97 (116)
T COG5336 49 SSEFISGILV--GAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRSAG 97 (116)
T ss_pred HHHHHHHHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666553 457889998889999999999999999999998876654
No 36
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=24.45 E-value=2e+02 Score=19.76 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=6.1
Q ss_pred CCCCCccccc
Q 043576 62 IADVETPLLQ 71 (143)
Q Consensus 62 ~~~~~~~~l~ 71 (143)
.|.|++|+++
T Consensus 88 ~d~EraPLLn 97 (97)
T PF08611_consen 88 TDRERAPLLN 97 (97)
T ss_pred CccccccccC
Confidence 4566677653
No 37
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=24.28 E-value=3.1e+02 Score=20.58 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccccCCCcccccCCCccc
Q 043576 80 AARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAVVLGLMIGYLVFRSESDDVTLVVDNPCAC 142 (143)
Q Consensus 80 ~~~~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aVvlG~~~G~~~f~~~~~~~~~~~~~~c~~ 142 (143)
..+....++=.++..++-.|.+-...--..+..+.++....++......+++ .+.+|.|
T Consensus 49 ~~~~~A~~lP~~El~~gl~Ll~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~----~~idCGC 107 (184)
T PF07291_consen 49 LVRPVAWALPWLELALGLLLLFPPTRRWAALLAAALLLVFTAAIAINLLRGR----TDIDCGC 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCCCC
Confidence 3445556666778887765555544333445555555555555555544332 3457888
No 38
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=24.18 E-value=2.5e+02 Score=19.34 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 86 TALFGINSGVGYLLMLAIM-------SFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 86 ~~l~~~q~~l~Y~LMLivM-------TyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
.++..+-..++|.++-.+| .|-.|--+.++.-..+|.+.|+..-+
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~ 84 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344555566666665555 46667777777778889999987643
No 39
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=23.75 E-value=1.3e+02 Score=18.79 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043576 32 LACFLFSAFYQYLEDRRVR 50 (143)
Q Consensus 32 i~vf~la~~~e~l~~~r~~ 50 (143)
++++++|++.-++|.+|+.
T Consensus 11 iLl~lvG~i~n~iK~L~Rv 29 (63)
T PF13980_consen 11 ILLILVGMIINGIKELRRV 29 (63)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999863
No 40
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=22.67 E-value=2.8e+02 Score=19.47 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 86 TALFGINSGVGYLLMLAIM-------SFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 86 ~~l~~~q~~l~Y~LMLivM-------TyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
.++..+-..+||.++-.+| .|-.|--+.++.-..+|.++|+..-+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s 84 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455556666777776666 46666667777777888888876543
No 41
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=22.35 E-value=72 Score=22.79 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhhhccccC-C-CcccccCCCc
Q 043576 108 GGVFLAVVLGLMIGYLVFRSES-D-DVTLVVDNPC 140 (143)
Q Consensus 108 ~~i~~aVvlG~~~G~~~f~~~~-~-~~~~~~~~~c 140 (143)
.|-|+|.++=+.+=+|+.-.++ . ++++++.+||
T Consensus 62 agsfiatliillviffviy~re~~~~~~gt~~d~~ 96 (150)
T PF06084_consen 62 AGSFIATLIILLVIFFVIYSREEEKNNNGTEVDQC 96 (150)
T ss_pred cchHHHHHHHHHHHhheeEeccccccCCCceechh
Confidence 3466666666666666654443 3 5667888887
No 42
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.17 E-value=1.7e+02 Score=19.71 Aligned_cols=22 Identities=27% Similarity=0.248 Sum_probs=14.6
Q ss_pred eeEEecCceeCChHHHHHHHHH
Q 043576 12 VTLLFDFWRTDSWPSYALTLLA 33 (143)
Q Consensus 12 ~~lLF~~W~~~s~~~~~~s~i~ 33 (143)
+.+-+.+|.++++...+...++
T Consensus 3 V~I~~~~~~ie~sl~~~~~~l~ 24 (108)
T PF07219_consen 3 VLISWGGYRIETSLWVALILLL 24 (108)
T ss_pred EEEEECCEEEEeeHHHHHHHHH
Confidence 4577899999976555444433
No 43
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.10 E-value=2.7e+02 Score=19.08 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhh
Q 043576 109 GVFLAVVLGLMIGY 122 (143)
Q Consensus 109 ~i~~aVvlG~~~G~ 122 (143)
|.++-+++|.++|.
T Consensus 76 ~tl~~lllGv~~G~ 89 (100)
T TIGR02230 76 WTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 44
>PRK02935 hypothetical protein; Provisional
Probab=21.90 E-value=1.8e+02 Score=20.36 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccccCCCc
Q 043576 96 GYLLMLAIMSFNGGVFLAVVLGLMIGYLVFRSESDDV 132 (143)
Q Consensus 96 ~Y~LMLivMTyN~~i~~aVvlG~~~G~~~f~~~~~~~ 132 (143)
++++|-+.|. +-+..+++..+=||--|-.+.+.
T Consensus 36 ~~~~m~ifm~----~G~l~~l~S~vvYFwiGmlStka 68 (110)
T PRK02935 36 SIIIMTIFML----LGFLAVIASTVVYFWIGMLSTKA 68 (110)
T ss_pred cHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcccc
Confidence 6777777776 23334556666677777665543
No 45
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.73 E-value=1.9e+02 Score=23.16 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=21.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhccccC
Q 043576 103 IMSFNGGVFLAVVLGLMIGYLVFRSES 129 (143)
Q Consensus 103 vMTyN~~i~~aVvlG~~~G~~~f~~~~ 129 (143)
-+.+......++.+|...|.++|.-++
T Consensus 38 ~~~~~~~~~~ai~~glvwgl~I~~lDR 64 (301)
T PF14362_consen 38 YTVFGGPVWAAIPFGLVWGLVIFNLDR 64 (301)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 344555569999999999999998776
No 46
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.71 E-value=3.2e+02 Score=20.23 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHhhhhccccC
Q 043576 85 GTALFGINSGVGYLLMLAIMSF------NGGVFLAVVLGLMIGYLVFRSES 129 (143)
Q Consensus 85 ~~~l~~~q~~l~Y~LMLivMTy------N~~i~~aVvlG~~~G~~~f~~~~ 129 (143)
..++|.+++. .+++.++++ ..+..+..++|.++||.+-.+.+
T Consensus 78 A~LvYi~PL~---~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ys 125 (150)
T COG3086 78 ALLVYIFPLV---GLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYS 125 (150)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777764 344445442 35678889999999999876554
No 47
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.56 E-value=1e+02 Score=17.87 Aligned_cols=30 Identities=17% Similarity=-0.156 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043576 25 PSYALTLLACFLFSAFYQYLEDRRVRLNRI 54 (143)
Q Consensus 25 ~~~~~s~i~vf~la~~~e~l~~~r~~l~~~ 54 (143)
++-++-++++++.++..-++-.+|+..+++
T Consensus 8 ~GVIlVF~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 8 GGVILVFCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred CCeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566777777777777778776655
No 48
>PF09997 DUF2238: Predicted membrane protein (DUF2238); InterPro: IPR014509 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins, with several transmembrane segments.
Probab=21.35 E-value=1e+02 Score=22.57 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=28.5
Q ss_pred EecCceeCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043576 15 LFDFWRTDS-WPSYALTLLACFLFSAFYQYLEDRRVRL 51 (143)
Q Consensus 15 LF~~W~~~s-~~~~~~s~i~vf~la~~~e~l~~~r~~l 51 (143)
+-+.+..+. .+.+++++..+...|.+||.+...-..+
T Consensus 80 l~r~~~~~~~~~~~~l~v~~~laiSa~YEliEw~~a~~ 117 (143)
T PF09997_consen 80 LIRKWPLRGGGWLFFLAVCVILAISAFYELIEWWAALL 117 (143)
T ss_pred HHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666 7889999999999999999998766543
No 49
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=20.93 E-value=1.1e+02 Score=19.29 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHhhhhcc
Q 043576 108 GGVFLAVVLGLMIGYLVFR 126 (143)
Q Consensus 108 ~~i~~aVvlG~~~G~~~f~ 126 (143)
.++++..++|.++|+++-.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5778888899998887543
Done!