Query 043576
Match_columns 143
No_of_seqs 104 out of 731
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 98.9 3.1E-13 1.1E-17 72.5 0.0 28 81-108 1-28 (29)
2 2ls4_A High affinity copper up 98.2 9.2E-10 3.2E-14 57.3 0.0 25 106-130 1-25 (26)
3 2ls2_A High affinity copper up 97.2 9.6E-07 3.3E-11 45.9 0.0 25 22-46 2-26 (26)
4 3arc_L Photosystem II reaction 37.5 43 0.0015 18.0 3.2 20 23-42 13-32 (37)
5 2jwa_A Receptor tyrosine-prote 30.1 49 0.0017 18.5 2.8 20 109-128 20-39 (44)
6 2k9p_A Pheromone alpha factor 25.9 1E+02 0.0035 19.3 4.1 21 80-100 16-36 (80)
7 1iij_A ERBB-2 receptor protein 21.2 39 0.0013 18.0 1.2 17 109-125 16-32 (35)
8 2vv5_A MSCS, small-conductance 20.3 2.8E+02 0.0097 20.9 7.8 29 17-45 21-49 (286)
9 3udc_A Small-conductance mecha 19.6 2.9E+02 0.01 20.7 11.1 43 81-123 65-109 (285)
10 2i68_A Protein EMRE; transmemb 15.8 2.7E+02 0.0093 18.8 7.2 23 106-128 60-82 (137)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.94 E-value=3.1e-13 Score=72.47 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043576 81 ARIAGTALFGINSGVGYLLMLAIMSFNG 108 (143)
Q Consensus 81 ~~~~~~~l~~~q~~l~Y~LMLivMTyN~ 108 (143)
+|++|+++|++|.++||+|||++||||+
T Consensus 1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 1 KHLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 4789999999999999999999999996
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.23 E-value=9.2e-10 Score=57.27 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHhhhhccccCC
Q 043576 106 FNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 106 yN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
||+|+++||++|+++||++|+++++
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKKX 25 (26)
Confidence 8999999999999999999999754
No 3
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.22 E-value=9.6e-07 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 043576 22 DSWPSYALTLLACFLFSAFYQYLED 46 (143)
Q Consensus 22 ~s~~~~~~s~i~vf~la~~~e~l~~ 46 (143)
+|++++++||+++|+++++||++|.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 5789999999999999999999983
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=37.46 E-value=43 Score=17.96 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 043576 23 SWPSYALTLLACFLFSAFYQ 42 (143)
Q Consensus 23 s~~~~~~s~i~vf~la~~~e 42 (143)
+..+.++.++.+|.+|++..
T Consensus 13 NRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 13 NRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhh
Confidence 56788888999999998764
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=30.05 E-value=49 Score=18.53 Aligned_cols=20 Identities=45% Similarity=0.891 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhhcccc
Q 043576 109 GVFLAVVLGLMIGYLVFRSE 128 (143)
Q Consensus 109 ~i~~aVvlG~~~G~~~f~~~ 128 (143)
++++.+++|..++.++=.+.
T Consensus 20 Gvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhheehhh
Confidence 35677888888877765554
No 6
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=25.91 E-value=1e+02 Score=19.34 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043576 80 AARIAGTALFGINSGVGYLLM 100 (143)
Q Consensus 80 ~~~~~~~~l~~~q~~l~Y~LM 100 (143)
...+-.++.|++|.+.+-++.
T Consensus 16 ~~~~~~~I~~G~~iGAs~lll 36 (80)
T 2k9p_A 16 NSTVTQAILFGVRSGAAALTL 36 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466778999999999884443
No 7
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.23 E-value=39 Score=18.04 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhhc
Q 043576 109 GVFLAVVLGLMIGYLVF 125 (143)
Q Consensus 109 ~i~~aVvlG~~~G~~~f 125 (143)
++++.+++|..+|.++=
T Consensus 16 glll~vii~l~~~~~iR 32 (35)
T 1iij_A 16 GVLLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHhheEEe
Confidence 37778888888887653
No 8
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=20.25 E-value=2.8e+02 Score=20.86 Aligned_cols=29 Identities=3% Similarity=-0.158 Sum_probs=12.3
Q ss_pred cCceeCChHHHHHHHHHHHHHHHHHHHHH
Q 043576 17 DFWRTDSWPSYALTLLACFLFSAFYQYLE 45 (143)
Q Consensus 17 ~~W~~~s~~~~~~s~i~vf~la~~~e~l~ 45 (143)
.+|-.+.....+.+.+.+++.-++.+.++
T Consensus 21 ~~~~~~~~~~i~~~~~i~~i~~~~~~~~~ 49 (286)
T 2vv5_A 21 QALLLSYAVNIVAALAIIIVGLIIARMIS 49 (286)
T ss_dssp ----CGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434444455555555444444445444
No 9
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=19.57 E-value=2.9e+02 Score=20.74 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhhh
Q 043576 81 ARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAV--VLGLMIGYL 123 (143)
Q Consensus 81 ~~~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aV--vlG~~~G~~ 123 (143)
..+++.++..+-..++.+..|-..-.|..-+++. ++|.++|+.
T Consensus 65 ~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a 109 (285)
T 3udc_A 65 TSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFG 109 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555556666544443 345555543
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=15.83 E-value=2.7e+02 Score=18.79 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHhhhhcccc
Q 043576 106 FNGGVFLAVVLGLMIGYLVFRSE 128 (143)
Q Consensus 106 yN~~i~~aVvlG~~~G~~~f~~~ 128 (143)
|..|..+..++...+|.++|+..
T Consensus 60 y~iw~~l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 60 YAIWSGVGIVLISLLSWGFFGQR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444555555555555555543
Done!