Query 043576
Match_columns 143
No_of_seqs 104 out of 731
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 10:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043576.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043576hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 42.3 16 0.0011 18.3 3.2 20 23-42 13-32 (37)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 29.0 14 0.001 17.4 1.5 14 27-40 8-22 (30)
3 d2vv5a3 f.34.1.1 (A:27-112) Me 19.9 75 0.0055 17.9 7.9 43 80-122 39-83 (86)
4 d1ozbi_ g.74.1.1 (I:) Preprote 18.9 19 0.0014 16.7 0.8 8 136-143 3-10 (26)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 14.7 54 0.0039 15.4 1.9 13 110-122 10-22 (32)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 13.4 1.9E+02 0.014 19.9 5.7 46 85-130 5-50 (248)
7 d2i9wa3 g.74.1.1 (A:159-183) H 12.0 39 0.0028 15.3 0.9 9 135-143 4-12 (26)
8 d2axti1 f.23.37.1 (I:1-35) Pho 10.0 1.1E+02 0.0081 14.8 2.7 21 112-132 8-28 (35)
9 d2axth1 f.23.33.1 (H:2-65) Pho 9.9 68 0.005 17.9 1.7 22 16-37 21-42 (64)
10 d1vtxa_ g.3.6.2 (A:) Atracotox 9.7 51 0.0037 16.7 0.9 8 136-143 10-17 (42)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=42.27 E-value=16 Score=18.32 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 043576 23 SWPSYALTLLACFLFSAFYQ 42 (143)
Q Consensus 23 s~~~~~~s~i~vf~la~~~e 42 (143)
+....++.++.+|.+|++..
T Consensus 13 NrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 46778888999999998764
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.97 E-value=14 Score=17.40 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=6.9
Q ss_pred HHHHH-HHHHHHHHH
Q 043576 27 YALTL-LACFLFSAF 40 (143)
Q Consensus 27 ~~~s~-i~vf~la~~ 40 (143)
++++| +++|+.+++
T Consensus 8 ~ifac~i~lfffaif 22 (30)
T d2axtt1 8 FIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 34555 445555544
No 3
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=19.92 E-value=75 Score=17.88 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhh
Q 043576 80 AARIAGTALFGINSGVGYLLMLAIMSFNGGVFLAV--VLGLMIGY 122 (143)
Q Consensus 80 ~~~~~~~~l~~~q~~l~Y~LMLivMTyN~~i~~aV--vlG~~~G~ 122 (143)
..+++..+.+..-..++.+..|-.+-.|..-+++. ++|.++|+
T Consensus 39 ~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 39 VADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666677777777655444 34555554
No 4
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=18.89 E-value=19 Score=16.74 Aligned_cols=8 Identities=38% Similarity=1.352 Sum_probs=5.5
Q ss_pred cCCCcccC
Q 043576 136 VDNPCACA 143 (143)
Q Consensus 136 ~~~~c~~~ 143 (143)
..+||-|+
T Consensus 3 RN~~CpCg 10 (26)
T d1ozbi_ 3 RNEPCPCG 10 (26)
T ss_dssp TTSBCTTT
T ss_pred CCCcCCCC
Confidence 45678775
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.66 E-value=54 Score=15.37 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhh
Q 043576 110 VFLAVVLGLMIGY 122 (143)
Q Consensus 110 i~~aVvlG~~~G~ 122 (143)
+|+|...|.++|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4566666666664
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=13.37 E-value=1.9e+02 Score=19.93 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccccCC
Q 043576 85 GTALFGINSGVGYLLMLAIMSFNGGVFLAVVLGLMIGYLVFRSESD 130 (143)
Q Consensus 85 ~~~l~~~q~~l~Y~LMLivMTyN~~i~~aVvlG~~~G~~~f~~~~~ 130 (143)
..++-.+..+..|.+.++..-=+.++.+.+++-..++.++|...+.
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~ 50 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKA 50 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccCc
Confidence 4567777888888888888777777777777777777777766543
No 7
>d2i9wa3 g.74.1.1 (A:159-183) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=12.03 E-value=39 Score=15.31 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=5.7
Q ss_pred ccCCCcccC
Q 043576 135 VVDNPCACA 143 (143)
Q Consensus 135 ~~~~~c~~~ 143 (143)
+.+.||-||
T Consensus 4 tqkqpcicg 12 (26)
T d2i9wa3 4 TQKQPCICG 12 (26)
T ss_dssp CTTSBCTTS
T ss_pred cccCCeeec
Confidence 356677775
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.02 E-value=1.1e+02 Score=14.81 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhhccccCCCc
Q 043576 112 LAVVLGLMIGYLVFRSESDDV 132 (143)
Q Consensus 112 ~aVvlG~~~G~~~f~~~~~~~ 132 (143)
.-+++-..++-|+||-.++++
T Consensus 8 Vy~vV~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 8 VYIVVTFFVLLFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHHHhhccCCC
Confidence 334455566777887665433
No 9
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.88 E-value=68 Score=17.87 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=13.5
Q ss_pred ecCceeCChHHHHHHHHHHHHH
Q 043576 16 FDFWRTDSWPSYALTLLACFLF 37 (143)
Q Consensus 16 F~~W~~~s~~~~~~s~i~vf~l 37 (143)
-++|-++-.-..+.+++.+|++
T Consensus 21 aPGWGTTplMgv~m~Lf~vfl~ 42 (64)
T d2axth1 21 APGWGTTPLMAVFMGLFLVFLL 42 (64)
T ss_dssp CSTTTTHHHHHHHHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHHHHH
Confidence 4677776666666666555443
No 10
>d1vtxa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=9.66 E-value=51 Score=16.68 Aligned_cols=8 Identities=25% Similarity=0.929 Sum_probs=4.9
Q ss_pred cCCCcccC
Q 043576 136 VDNPCACA 143 (143)
Q Consensus 136 ~~~~c~~~ 143 (143)
+.+.|||+
T Consensus 10 ktedcccp 17 (42)
T d1vtxa_ 10 KTEDCCCP 17 (42)
T ss_dssp SSCCCSTT
T ss_pred Cccccccc
Confidence 45667774
Done!