BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043577
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M R Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 7 DIHTYLR---EMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 109
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 110 DTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLID 169
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PSLIA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 170 ADPYLKYLPSLIAGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKA 227
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 228 PQHAQQSIREKYKHSK 243
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M R Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 7 DIHTYLR---EMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 109
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 110 DTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLID 169
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PSLIA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 170 ADPYLKYLPSLIAGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKA 227
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 228 PQHAQQSIREKYKHSK 243
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M R Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 10 DIHTYLR---EMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 66 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 112
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 113 DTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLID 172
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PSLIA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 173 ADPYLKYLPSLIAGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKA 230
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 231 PQHAQQSIREKYKHSK 246
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 131/256 (51%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 132/256 (51%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NTRFIRAAQRSNK-----------APSM-QF---------------ECLANYILELSLLD 327
+T + R AP++ QF E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 132/256 (51%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NTRFIRAAQRSNK-----------APSM-QF---------------ECLANYILELSLLD 327
+T + R AP++ QF E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 132/256 (51%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NTRFIRAAQRSNK-----------APSM-QF---------------ECLANYILELSLLD 327
+T + R AP++ QF E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 132/256 (51%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NTRFIRAAQRSNK-----------APSM-QF---------------ECLANYILELSLLD 327
+T + R AP++ QF E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 132/256 (51%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NTRFIRAAQRSNK-----------APSM-QF---------------ECLANYILELSLLD 327
+T + R AP++ QF E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 132/256 (51%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NTRFIRAAQRSNK-----------APSM-QF---------------ECLANYILELSLLD 327
+T + R AP++ QF E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 9 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 65 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 111
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 112 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 171
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 172 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 229
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 230 PQHAQQSIREKYKNSK 245
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 10 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 66 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 112
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 113 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 172
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 173 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 230
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 231 PQHAQQSIREKYKNSK 246
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 5 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 60
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 61 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 107
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 108 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 167
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 168 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 225
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 226 PQHAQQSIREKYKNSK 241
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 7 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 109
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 110 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 169
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 170 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 227
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 228 PQHAQQSIREKYKNSK 243
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 8 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 63
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 64 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 110
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 111 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 170
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 171 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 228
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 229 PQHAQQSIREKYKNSK 244
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 14 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 69
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 70 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 116
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 117 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 176
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 177 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 234
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 235 PQHAQQSIREKYKNSK 250
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 9 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 65 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 111
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 112 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 171
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 172 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 229
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 230 PQHAQQSIREKYKNSK 245
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 7 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 109
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 110 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 169
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IA +A LA + + + W +L T Y L C+ LH+ +
Sbjct: 170 ADPYLKYLPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 227
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 228 PQHAQQSIREKYKNSK 243
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y C+ LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLETSKPCMLDLHQTYLKA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DI+ LR + + K +P + +M + Q DI MRAIL+DWLVEV EEY+L ETL LAV
Sbjct: 11 DIHTYLR---EMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
NYIDR+LS ++R +LQL+G A M+++ SK+EEI PP+V E YITD
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITD 113
Query: 295 NT-----------------RFIRAAQRSNKAPSMQF----------ECLANYILELSLLD 327
+T F AA N+ + F E LA ++ ELSL+D
Sbjct: 114 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 173
Query: 328 Y-KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386
L Y PS+IAA+A LA + + + W +L T Y L + LH+ +
Sbjct: 174 ADPYLKYLPSVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPMLLDLHQTYLKA 231
Query: 387 GLSNLSAIREKYSQHK 402
+IREKY K
Sbjct: 232 PQHAQQSIREKYKNSK 247
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 48/262 (18%)
Query: 169 CATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPE 228
C+ DIY LR E+ QA + L + +++ MRAILIDWLV+V ++RL+ E
Sbjct: 1 CSEYVKDIYAYLRQLEEEQAVRPKYL-----LGREVTGNMRAILIDWLVQVQMKFRLLQE 55
Query: 229 TLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEE 288
T+++ V+ IDR++ N + ++ LQL+GV M ++ SKYEE+ PP++ +
Sbjct: 56 TMYMTVSIIDRFMQNNCVPKKMLQLVGVTAM-------------FIASKYEEMYPPEIGD 102
Query: 289 LCYITDNT-----------RFIRA-------------AQRSNKAPSMQFE--CLANYILE 322
++TDNT + +RA +R++K + E LA Y++E
Sbjct: 103 FAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLME 162
Query: 323 LSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHR- 381
L++LDY M+ + PS IAA A LA IL W TL HY Y L ++ L +
Sbjct: 163 LTMLDYDMVHFPPSQIAAGAFCLALKILD--NGEWTPTLQHYLSYTEESLLPVMQHLAKN 220
Query: 382 -LFCDGGLSNLSAIREKYSQHK 402
+ + GL+ ++ KY+ K
Sbjct: 221 VVMVNQGLTKHMTVKNKYATSK 242
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 48/256 (18%)
Query: 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAV 234
DIY LR E QA + L + +++ MRAILIDWLV+V ++RL+ ET+++ V
Sbjct: 9 DIYAYLRQLEAAQAVRPKYL-----LGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 63
Query: 235 NYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITD 294
+ IDR++ N + ++ LQL+GV M ++ SKYEE+ PP++ + ++TD
Sbjct: 64 SIIDRFMQNNSVPKKMLQLVGVTAM-------------FIASKYEEMYPPEIGDFAFVTD 110
Query: 295 NT-----------RFIRA-------------AQRSNKAPSMQFE--CLANYILELSLLDY 328
NT + +RA +R++K + E LA Y++EL++LDY
Sbjct: 111 NTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDY 170
Query: 329 KMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHR--LFCDG 386
M+ + PS IAA A LA IL W TL HY Y L ++ L + + +
Sbjct: 171 DMVHFPPSQIAAGAFSLALKILD--NGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQ 228
Query: 387 GLSNLSAIREKYSQHK 402
GL+ ++ KY+ K
Sbjct: 229 GLTKHMTVKNKYATSK 244
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 180 LRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDR 239
LRA + PS+ + VQK++ P MR I+ W++EV EE + E LA+NY+DR
Sbjct: 28 LRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDR 87
Query: 240 YLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT 296
+LS + + +LQLLG CM +V SK +E P E+LC TDN+
Sbjct: 88 FLSLEPVKKSRLQLLGATCM-------------FVASKMKETIPLTAEKLCIYTDNS 131
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 13/105 (12%)
Query: 192 PSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQL 251
PS+ + VQK++ P MR I+ W++EV EE + E LA+NY+DR+LS + + +L
Sbjct: 26 PSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 85
Query: 252 QLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT 296
QLLG CM +V SK +E P E+LC TDN+
Sbjct: 86 QLLGATCM-------------FVASKMKETIPLTAEKLCIYTDNS 117
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 192 PSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQL 251
P + VQ++I P MR +L W++EV EE R E LA+NY+DRYLS + QL
Sbjct: 54 PRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQL 113
Query: 252 QLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDN 295
QLLG CM+++ SK E P +E+LC TD+
Sbjct: 114 QLLGAVCMLLA-------------SKLRETTPLTIEKLCIYTDH 144
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 14/94 (14%)
Query: 204 INPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNV-IIRQQLQLLGVACMMIS 262
+ P MRAIL+DWL+EV E Y+L ET +LA ++ DRY++ +++ LQL+G++ + I+
Sbjct: 45 LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIA 104
Query: 263 ATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT 296
A K EEI PP++ + Y+TD
Sbjct: 105 A-------------KLEEIYPPKLHQFAYVTDGA 125
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 192 PSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQL 251
P + +Q ++ R IL+ W+ + E + L L+V+ +DRYL ++ L
Sbjct: 35 PKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTL 94
Query: 252 QLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYIT 293
Q +G AC++I SK + P V +L Y++
Sbjct: 95 QKIGAACVLIG-------------SKIRTVKPMTVSKLTYLS 123
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 192 PSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQL 251
P + +Q ++ R IL+ W+ + E + L L+V+ +DRYL ++ L
Sbjct: 14 PKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTL 73
Query: 252 QLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYIT 293
Q +G AC++I SK + P V +L Y++
Sbjct: 74 QKIGAACVLIG-------------SKIRTVKPMTVSKLTYLS 102
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 201 QKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMM 260
Q+ + MR +L W+ V +EY L P + LA+N +DR L + ++ Q G AC++
Sbjct: 43 QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLL 102
Query: 261 ISATMDNKWKSDYVVSKYEEICPPQVEELCY 291
V SK + P LCY
Sbjct: 103 -------------VASKLRSLTPISTSSLCY 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,384,764
Number of Sequences: 62578
Number of extensions: 327818
Number of successful extensions: 727
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 30
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)