Query 043577
Match_columns 402
No_of_seqs 257 out of 1522
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0654 G2/Mitotic-specific cy 100.0 3.7E-41 8.1E-46 334.5 10.2 227 157-402 87-341 (359)
2 COG5024 Cyclin [Cell division 100.0 7.2E-38 1.6E-42 318.5 12.1 227 155-402 162-417 (440)
3 KOG0653 Cyclin B and related k 100.0 1.4E-36 3E-41 309.6 17.1 228 155-402 108-366 (391)
4 KOG0655 G1/S-specific cyclin E 100.0 3.2E-31 6.9E-36 256.3 14.6 186 172-384 112-336 (408)
5 KOG0656 G1/S-specific cyclin D 99.9 1.1E-25 2.3E-30 222.4 15.0 192 170-377 42-268 (335)
6 PF00134 Cyclin_N: Cyclin, N-t 99.8 5.7E-19 1.2E-23 151.2 7.6 105 175-296 1-105 (127)
7 PF02984 Cyclin_C: Cyclin, C-t 99.7 9.7E-17 2.1E-21 135.1 10.2 104 297-402 5-108 (118)
8 TIGR00569 ccl1 cyclin ccl1. Un 99.5 1.1E-12 2.5E-17 129.8 16.6 131 207-351 54-221 (305)
9 KOG0835 Cyclin L [General func 99.4 2.4E-12 5.2E-17 125.7 15.0 180 202-385 16-231 (367)
10 KOG0834 CDK9 kinase-activating 99.4 8.6E-13 1.9E-17 131.0 8.2 184 198-387 28-249 (323)
11 cd00043 CYCLIN Cyclin box fold 99.2 3.9E-11 8.4E-16 94.3 5.1 74 208-295 1-74 (88)
12 KOG0794 CDK8 kinase-activating 99.1 2.1E-10 4.6E-15 107.6 10.5 173 209-386 41-241 (264)
13 smart00385 CYCLIN domain prese 98.9 1.4E-09 3.1E-14 84.6 4.3 68 214-295 1-68 (83)
14 COG5333 CCL1 Cdk activating ki 98.8 1.8E-08 3.9E-13 98.5 10.6 151 204-359 40-213 (297)
15 PRK00423 tfb transcription ini 98.7 9.7E-07 2.1E-11 88.0 17.2 156 211-383 124-304 (310)
16 smart00385 CYCLIN domain prese 98.5 4.6E-07 9.9E-12 70.3 8.8 80 298-380 2-82 (83)
17 cd00043 CYCLIN Cyclin box fold 98.1 3.3E-05 7.2E-10 60.2 9.7 80 297-379 7-87 (88)
18 KOG2496 Cdk activating kinase 97.9 0.00027 5.9E-09 69.4 13.7 57 211-267 58-116 (325)
19 KOG1597 Transcription initiati 97.7 0.00054 1.2E-08 67.1 12.9 151 216-383 111-288 (308)
20 COG1405 SUA7 Transcription ini 97.4 0.0036 7.8E-08 61.9 14.6 172 209-383 97-279 (285)
21 PF08613 Cyclin: Cyclin; Inte 95.1 0.038 8.3E-07 49.3 5.3 68 212-292 54-126 (149)
22 KOG1598 Transcription initiati 94.7 0.18 4E-06 53.3 9.8 133 215-350 73-223 (521)
23 PF00382 TFIIB: Transcription 93.0 0.18 3.9E-06 39.0 4.6 47 216-262 1-47 (71)
24 PF00382 TFIIB: Transcription 91.3 1.9 4E-05 33.3 8.5 59 312-372 13-71 (71)
25 KOG4164 Cyclin ik3-1/CABLES [C 90.1 0.061 1.3E-06 54.8 -1.1 69 207-289 381-449 (497)
26 PF00134 Cyclin_N: Cyclin, N-t 78.9 20 0.00043 29.9 9.3 83 297-381 36-120 (127)
27 PRK00423 tfb transcription ini 76.9 27 0.00058 35.0 10.9 71 312-384 141-211 (310)
28 PF02984 Cyclin_C: Cyclin, C-t 56.2 14 0.00031 30.1 3.6 50 213-262 4-53 (118)
29 COG1405 SUA7 Transcription ini 46.3 34 0.00074 34.0 5.0 52 211-262 193-244 (285)
30 KOG1597 Transcription initiati 44.5 51 0.0011 32.9 5.8 51 333-385 144-194 (308)
31 KOG0834 CDK9 kinase-activating 37.9 23 0.00051 35.8 2.4 54 209-262 152-205 (323)
32 KOG1674 Cyclin [General functi 36.8 42 0.00091 32.0 3.8 51 212-262 78-138 (218)
33 KOG0835 Cyclin L [General func 36.1 54 0.0012 33.4 4.5 54 222-288 151-206 (367)
34 PF08613 Cyclin: Cyclin; Inte 35.8 3E+02 0.0066 24.1 10.0 44 331-375 94-137 (149)
35 PF09080 K-cyclin_vir_C: K cyc 26.1 3.8E+02 0.0082 22.2 7.7 66 320-385 32-101 (106)
36 cd04443 DEP_GPR155 DEP (Dishev 22.4 97 0.0021 25.0 3.0 32 209-241 33-64 (83)
37 PF14376 Haem_bd: Haem-binding 21.2 1E+02 0.0022 27.1 3.2 40 172-218 94-135 (137)
38 cd04438 DEP_dishevelled DEP (D 21.1 1.1E+02 0.0024 24.7 3.2 37 209-245 32-68 (84)
39 cd04441 DEP_2_DEP6 DEP (Dishev 20.6 1.1E+02 0.0025 24.8 3.1 33 209-242 35-67 (85)
40 TIGR00569 ccl1 cyclin ccl1. Un 20.3 7.2E+02 0.016 24.9 9.4 37 314-350 79-115 (305)
No 1
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-41 Score=334.49 Aligned_cols=227 Identities=56% Similarity=0.870 Sum_probs=213.5
Q ss_pred cCccCCCCCchhhhhhHHHHHHHHHHhhhhhhc-CCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 043577 157 VDIDDNIKDPQFCATIACDIYKNLRASEDFQAK-KRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVN 235 (402)
Q Consensus 157 ~~id~~~~dp~~~~eY~~eI~~~L~~~E~~~~~-~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~ 235 (402)
.++|.+..||++|..|+.+|++|++..| .+ .+|.++||+.+|.++++.||.++|||+++|++++++..+|||++++
T Consensus 87 ~~~ds~~~dp~~c~~~~~~I~~~~r~~e---i~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~ 163 (359)
T KOG0654|consen 87 MRIDSVGEDPQMCLKIAAKIYNTLRVSD---IKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVN 163 (359)
T ss_pred cchhhcccchHHHHHHHHHHhhcccccc---hhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHH
Confidence 6888899999999999999999999999 77 9999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch-------------------
Q 043577 236 YIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT------------------- 296 (402)
Q Consensus 236 ~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~------------------- 296 (402)
++||||....+.+.++|++|++|++|| +||||+.+|.+++||+++|+.
T Consensus 164 ~~drfl~~~~~~~~k~ql~g~s~m~I~-------------sk~ee~~~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~ 230 (359)
T KOG0654|consen 164 YRDRFLSYKEVNKQKLQLVGISAMLIA-------------SKYEEIKEPRVEEFCYITDNTYTYWQVLRMEIDILNALTF 230 (359)
T ss_pred HHHHHhccCccHHHHHHHhCcccceee-------------ccchhhcchHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999 999999999999999999998
Q ss_pred --------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCC
Q 043577 297 --------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQ 368 (402)
Q Consensus 297 --------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~ 368 (402)
.|++.+......+..+++.++.||.|++++|+.|++|.||+|||||+++|+.+++ ..+|+..|+++|||+
T Consensus 231 ~~~~pt~~~~l~~~~~~~~~~~~~~e~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~--~~pW~~~L~~~T~y~ 308 (359)
T KOG0654|consen 231 ELVRPTSKTFLRRFLRVAQTPELQVEPLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLD--FHPWNQTLEDYTGYK 308 (359)
T ss_pred HHhCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhcc--CCCCchhhHHhhccc
Confidence 3454443333335667899999999999999999999999999999999999994 889999999999999
Q ss_pred hhhHHHHHHHHHHHHhhCCCCChhHHHHhhcCCC
Q 043577 369 PSDLCDCVKALHRLFCDGGLSNLSAIREKYSQHK 402 (402)
Q Consensus 369 ~~~L~~C~~~L~~l~~~~~~~~~~aIr~KYs~~k 402 (402)
.++|..|+..|+ ++.+.++..+++||+||+++|
T Consensus 309 ~edl~~~v~~L~-~~l~~~~~~l~air~ky~~~k 341 (359)
T KOG0654|consen 309 AEDLKPCVLDLH-LYLNASGTDLPAIREKYKQSK 341 (359)
T ss_pred HHHHHHHHHHHh-cccCCCCCchHHHHHHhhhhh
Confidence 999999999999 999999999999999999987
No 2
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.2e-38 Score=318.47 Aligned_cols=227 Identities=35% Similarity=0.572 Sum_probs=209.2
Q ss_pred CccCcc-CCCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHH
Q 043577 155 DFVDID-DNIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLA 233 (402)
Q Consensus 155 ~~~~id-~~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LA 233 (402)
...|+| .+.+||.|+.||+.+||.||+++| ..+.|.++||.+ |+.+...||.+|||||++||..|++.+||||||
T Consensus 162 ~~~dld~~~~~d~~mv~Ey~~~Ife~l~k~e---~~~lp~~~yl~k-q~~~~~~mR~~Lv~wlvevH~~F~llpeTL~la 237 (440)
T COG5024 162 SWQDLDATDQEDPLMVPEYASDIFEYLLKLE---LIDLPNPNYLIK-QSLYEWSMRSILVDWLVEVHGKFGLLPETLFLA 237 (440)
T ss_pred CccccccccccCccchHHHHHHHHHHHHHHH---HHhcCcHHHHhh-cchhHHhHHHHHHHHHHHhcccccccchHHHHH
Confidence 456777 688999999999999999999999 999999999887 899999999999999999999999999999999
Q ss_pred HHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch-----------------
Q 043577 234 VNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT----------------- 296 (402)
Q Consensus 234 V~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~----------------- 296 (402)
||+|||||+.+++.-+++||+|++||||| +||||+..|.+.+|+++++++
T Consensus 238 iniiDrfLs~~~v~l~k~QLvg~s~LfIa-------------~K~EE~~~p~i~~l~~~t~g~~t~~~i~~aE~~ml~~l 304 (440)
T COG5024 238 INIIDRFLSSRVVSLEKYQLVGISALFIA-------------SKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVL 304 (440)
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHHH-------------HhHhHhcCHHHHHHHHHHcccccHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999 999999999999999999988
Q ss_pred ----------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhC
Q 043577 297 ----------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTF 366 (402)
Q Consensus 297 ----------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tg 366 (402)
.|||++...... ..+.++++.|++|++++++.|.+++||.+|+||+++++.+++ ...|...|.+++|
T Consensus 305 ~f~is~P~P~sFLRriSka~dy-d~~srt~~k~~~e~s~~~~~f~~~~~S~~~aaa~~~s~~~~~--~~~w~~~l~~ySg 381 (440)
T COG5024 305 DFNISWPSPMSFLRRISKASDY-DIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILS--QNQWDRTLIHYSG 381 (440)
T ss_pred ccccCCCChHHHHHHHHhhccc-chhhhhhHhhhCCchHhhhhhccCCchHHHHHHHHHHHhhhc--cCCCCccccccCC
Confidence 789988877653 446788999999999999999999999999999999999994 4459999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhCCCCChhHHHHhhcCCC
Q 043577 367 -YQPSDLCDCVKALHRLFCDGGLSNLSAIREKYSQHK 402 (402)
Q Consensus 367 -y~~~~L~~C~~~L~~l~~~~~~~~~~aIr~KYs~~k 402 (402)
|+.+++.++...+.+.+.....+ +.+++.||...|
T Consensus 382 ~y~~~~l~~~~~~~~~~l~~~~~~-~~~i~~Ky~~~~ 417 (440)
T COG5024 382 NYTNPDLKPLNESNKENLQNPSVH-HDAIFPKYPSPT 417 (440)
T ss_pred CCCchhHHHHHHHHHHHhcccchh-hhhhhhcccccc
Confidence 99999999999999988666554 489999998754
No 3
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-36 Score=309.56 Aligned_cols=228 Identities=40% Similarity=0.613 Sum_probs=202.2
Q ss_pred CccCcc-CCCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHH
Q 043577 155 DFVDID-DNIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLA 233 (402)
Q Consensus 155 ~~~~id-~~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LA 233 (402)
.+.|+| .+..+|+++.+|..+||.++++.| ..+.|...+ .. |.+++..||.++||||++||..|+|.+||||||
T Consensus 108 ~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e---~~~~p~~~~-~~-~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~La 182 (391)
T KOG0653|consen 108 SILDLDSEDKSDPSMIVEYVQDIFEYLRQLE---LEFLPLSYD-IS-QSEIRAKMRAILVDWLVEVHEKFGLSPETLYLA 182 (391)
T ss_pred CccCcchhcccCcHHHHHHHHHHHHHHHHHH---HhhCchhhh-cc-cccccHHHHHHHHHHHHHhhhhcCcCHHHHHHH
Confidence 366777 588999999999999999999999 566776554 43 889999999999999999999999999999999
Q ss_pred HHHHhhhhccccccccccchhhHHHHH-hhcccccccccccccccccccCCccccchhhhccch----------------
Q 043577 234 VNYIDRYLSGNVIIRQQLQLLGVACMM-ISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT---------------- 296 (402)
Q Consensus 234 V~~lDRfLs~~~v~~~~LQLvgitCL~-IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~---------------- 296 (402)
||++||||++..+.+.++||||++||| || +||||+.+|.++||+++++++
T Consensus 183 VnliDRfL~~~~v~~~~lqLvgvsalf~IA-------------~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~ 249 (391)
T KOG0653|consen 183 VNLIDRFLSKVKVPLKKLQLVGVSALLSIA-------------CKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNV 249 (391)
T ss_pred HHHHHHHHHHhcccHHHhhHHhHHHHHHHH-------------HhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhc
Confidence 999999999988999999999999966 99 999999999999999999988
Q ss_pred -----------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhh
Q 043577 297 -----------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYT 365 (402)
Q Consensus 297 -----------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~t 365 (402)
.||+++..... .....+.+++|++|++++|+.++.++||.+|+|++++++.+.. ....|...+.+++
T Consensus 250 L~f~l~~p~~~~FLrr~~ka~~-~d~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~-~~~~w~~~~~~~s 327 (391)
T KOG0653|consen 250 LEFDLSVPTPLSFLRRFLKAAD-YDIKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLS-KGDVWSPTLEHYS 327 (391)
T ss_pred cCeeecCCchHHHHHHHHHhhh-cchhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhc-cCCccCCCCeecc
Confidence 78888877765 5567789999999999999999999999999999999999983 2236999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC-CCCChhH-HHHhhcCCC
Q 043577 366 FYQPSDLCDCVKALHRLFCDG-GLSNLSA-IREKYSQHK 402 (402)
Q Consensus 366 gy~~~~L~~C~~~L~~l~~~~-~~~~~~a-Ir~KYs~~k 402 (402)
||...++.+|...+..+.... .+..... +++||+..|
T Consensus 328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~~~~ 366 (391)
T KOG0653|consen 328 GYSESYLFECARSLSALSLSSLQNPSLRASVLNKYNSSK 366 (391)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcccchhHHHHHHHhcccc
Confidence 999999999999999955544 3445554 999999764
No 4
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.2e-31 Score=256.33 Aligned_cols=186 Identities=31% Similarity=0.552 Sum_probs=158.3
Q ss_pred hHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhcc-ccccccc
Q 043577 172 IACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSG-NVIIRQQ 250 (402)
Q Consensus 172 Y~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~-~~v~~~~ 250 (402)
-..+++..|..+| ..+..+..|+.. +|++.++||++|+|||+|||+.|+|.+||||||+.||||||.. ..+.+.+
T Consensus 112 n~~eVW~lM~kke---e~~l~~~~~l~q-Hpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~v~kt~ 187 (408)
T KOG0655|consen 112 NSKEVWLLMLKKE---ERYLRDKHFLEQ-HPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVEVSKTN 187 (408)
T ss_pred CHHHHHHHHHccc---hhhhhhhHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3569999999999 888887788876 8999999999999999999999999999999999999999987 6799999
Q ss_pred cchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch---------------------------HHHHHHH
Q 043577 251 LQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT---------------------------RFIRAAQ 303 (402)
Q Consensus 251 LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~---------------------------~FL~~~~ 303 (402)
|||||+|||||| +|+|||+||++.+|.|+||++ .||..+.
T Consensus 188 lQLIGitsLFIA-------------AK~EEIYpPKl~eFAyvTDgAcs~ddIltmE~iilkal~W~l~PiTii~WL~vyl 254 (408)
T KOG0655|consen 188 LQLIGITSLFIA-------------AKLEEIYPPKLIEFAYVTDGACSEDDILTMELIILKALKWELSPITIISWLNVYL 254 (408)
T ss_pred HHHhhHHHHHHH-------------HHHhhccCccccceeeeccCccchHHHHHHHHHHHHHhcccccceehHHHHHHHH
Confidence 999999999999 999999999999999999998 4444443
Q ss_pred hhC---CCC--------cHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhH
Q 043577 304 RSN---KAP--------SMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDL 372 (402)
Q Consensus 304 ~~~---~~~--------~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L 372 (402)
.+. +.+ ...+..+| .|++++++|...+.|..++||||||+.-... ....+.+|+...++
T Consensus 255 Qv~~~n~~~k~l~Pq~~~~efiqia-qlLDlc~ldids~~fsYrilaAAal~h~~s~---------e~v~kaSG~~w~~i 324 (408)
T KOG0655|consen 255 QVDALNDAPKVLLPQYSQEEFIQIA-QLLDLCILDIDSLEFSYRILAAAALCHFTSI---------EVVKKASGLEWDSI 324 (408)
T ss_pred HHHhcCCCCceeccccchHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHHhHH---------HHHHHcccccHHHH
Confidence 322 111 12223344 3788999999999999999999999875433 46788999999999
Q ss_pred HHHHHHHHHHHh
Q 043577 373 CDCVKALHRLFC 384 (402)
Q Consensus 373 ~~C~~~L~~l~~ 384 (402)
++|++.|.-+++
T Consensus 325 e~cv~wm~Pf~r 336 (408)
T KOG0655|consen 325 EECVDWMVPFVR 336 (408)
T ss_pred HHHHHHHHHHHH
Confidence 999999987655
No 5
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-25 Score=222.38 Aligned_cols=192 Identities=32% Similarity=0.451 Sum_probs=149.1
Q ss_pred hhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhcccccccc
Q 043577 170 ATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQ 249 (402)
Q Consensus 170 ~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~ 249 (402)
.-+.++++..|.+.| ..+.|..+|...+|..+++.||.+.++||.+||.++++.++|++||+|||||||+.+++++.
T Consensus 42 ~~~~e~~i~~ll~kE---e~~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~ 118 (335)
T KOG0656|consen 42 LLWDERVLANLLEKE---EQHNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKD 118 (335)
T ss_pred ccccHHHHHHHHHHH---HHhCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCC
Confidence 346678999999999 89999999888889999999999999999999999999999999999999999999999999
Q ss_pred c---cchhhHHHHHhhcccccccccccccccccccCCccccch-hhhccch---------------------------HH
Q 043577 250 Q---LQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEEL-CYITDNT---------------------------RF 298 (402)
Q Consensus 250 ~---LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df-~~itd~~---------------------------~F 298 (402)
+ +||+|++||+|| ||+||+..|.+.|+ +..+++. +|
T Consensus 119 k~W~lQLlAvaCLsLA-------------sKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF 185 (335)
T KOG0656|consen 119 KPWMLQLLAVACLSLA-------------SKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSF 185 (335)
T ss_pred chHHHHHHHHHHHHHH-------------HhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHH
Confidence 9 999999999999 99999987777776 3334443 55
Q ss_pred HHHHHhhCCC---CcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCC-CChHHHHHhhCCChhhHHH
Q 043577 299 IRAAQRSNKA---PSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKK-PWNSTLGHYTFYQPSDLCD 374 (402)
Q Consensus 299 L~~~~~~~~~---~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~-~W~~~L~~~tgy~~~~L~~ 374 (402)
++.+...-.. ....+..-+.-++-.+..|..|+.|+||+||+|++.++...+.+... .....+..+..++.+.+..
T Consensus 186 ~~~fl~ki~~~~~~~~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~~l~~e~~~~ 265 (335)
T KOG0656|consen 186 IDHFLSKISQKDHNKHLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLLSLSKEKVNR 265 (335)
T ss_pred HHHHHHHcCcccchHHHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhHHhhhc
Confidence 5544322111 11122333444444788999999999999999999888777643221 1124555666777777777
Q ss_pred HHH
Q 043577 375 CVK 377 (402)
Q Consensus 375 C~~ 377 (402)
|..
T Consensus 266 ~~~ 268 (335)
T KOG0656|consen 266 CYD 268 (335)
T ss_pred chh
Confidence 776
No 6
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.77 E-value=5.7e-19 Score=151.19 Aligned_cols=105 Identities=43% Similarity=0.810 Sum_probs=95.3
Q ss_pred HHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchh
Q 043577 175 DIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLL 254 (402)
Q Consensus 175 eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLv 254 (402)
|||++|++.| .++.+.+.|++. |++++..+|..+++||.+++..++++++|+++|+.|||||+.+..+.+.+++++
T Consensus 1 ~i~~~~~~~e---~~~~~~~~~~~~-~~~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~~li 76 (127)
T PF00134_consen 1 DIFRYLLEKE---LKYKPNPDYLEQ-QPEITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKLQLI 76 (127)
T ss_dssp HHHHHHHHHH---HHTTCCTTHGTG-TSSHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGHHHH
T ss_pred CHHHHHHHHH---HHHCcCcccccc-ChhcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchhhhh
Confidence 7999999999 888999999985 778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccccccccccccccccCCccccchhhhccch
Q 043577 255 GVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT 296 (402)
Q Consensus 255 gitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~ 296 (402)
|++||+|| +|++|..+|.+.+++.++++.
T Consensus 77 ~~~cl~lA-------------~K~~e~~~~~~~~~~~~~~~~ 105 (127)
T PF00134_consen 77 ALACLFLA-------------SKMEEDNPPSISDLIRISDNT 105 (127)
T ss_dssp HHHHHHHH-------------HHHHTSS--HHHHHHHHTTTS
T ss_pred hhhHHHHh-------------hhhhccccchHHHHHHHHcCC
Confidence 99999999 999999999999998887543
No 7
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=99.69 E-value=9.7e-17 Score=135.08 Aligned_cols=104 Identities=41% Similarity=0.671 Sum_probs=91.2
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCV 376 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~ 376 (402)
+||+.+....+ ....+..+++||+|++++|+.|++|+||+||+||+++|+.+++ ....|+..|..++||+.++|.+|+
T Consensus 5 ~Fl~~~~~~~~-~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~-~~~~~~~~l~~~t~~~~~~l~~c~ 82 (118)
T PF02984_consen 5 DFLRRFLKISN-ADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILG-KEPPWPESLEKLTGYDKEDLKECI 82 (118)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHH-SSTCSHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHcC-CcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhC-ccccCCccchhhcCCCHHHHHHHH
Confidence 68888855432 3556899999999999999999999999999999999999994 446999999999999999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHhhcCCC
Q 043577 377 KALHRLFCDGGLSNLSAIREKYSQHK 402 (402)
Q Consensus 377 ~~L~~l~~~~~~~~~~aIr~KYs~~k 402 (402)
+.|..++.+..+..+++|++||++++
T Consensus 83 ~~i~~~~~~~~~~~~~ai~~Kys~~~ 108 (118)
T PF02984_consen 83 ELIQELLSKASNSKLQAIRKKYSSQK 108 (118)
T ss_dssp HHHHHHHHHCCGSSCTHHHHHTTSGG
T ss_pred HHHHHHHHhcCCccchHHHHHhCccc
Confidence 99999999888888999999999864
No 8
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.47 E-value=1.1e-12 Score=129.80 Aligned_cols=131 Identities=17% Similarity=0.244 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHHhcC--cchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCc
Q 043577 207 GMRAILIDWLVEVSEEYR--LVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPP 284 (402)
Q Consensus 207 ~~R~~LVdWL~eV~~~~~--L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p 284 (402)
.+|....++|.++|..|+ |..+|+.+|+.||+||+.++++..-+.++||+|||||| +|+||.. .
T Consensus 54 ~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA-------------~KvEE~~-~ 119 (305)
T TIGR00569 54 DLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLA-------------CKVEEFN-V 119 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHH-------------HhccccC-c
Confidence 788888999999999999 99999999999999999999999999999999999999 5555542 2
Q ss_pred cccchhhhccch-----------------------------HHHHHH----HhhC--CCCcHHHHHHHHHHHHHhccccc
Q 043577 285 QVEELCYITDNT-----------------------------RFIRAA----QRSN--KAPSMQFECLANYILELSLLDYK 329 (402)
Q Consensus 285 ~l~df~~itd~~-----------------------------~FL~~~----~~~~--~~~~~~l~~la~yllElsL~d~~ 329 (402)
.+.+|+....+. +||..+ .... ......+...++.++.-+++..-
T Consensus 120 si~~fv~~~~~~~~~~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~~~~~~l~q~a~~~lndsl~Td~ 199 (305)
T TIGR00569 120 SIDQFVGNLKETPLKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLNRTLLTDA 199 (305)
T ss_pred CHHHHHhhccCCchhhHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCc
Confidence 344444322111 333322 2110 01112344555555555655555
Q ss_pred ccCCCHHHHHHHHHHHHHHHhC
Q 043577 330 MLCYSPSLIAASATFLANFILY 351 (402)
Q Consensus 330 fl~~~PS~IAaAai~lA~~~l~ 351 (402)
++.|+||.||+|||++|.+.++
T Consensus 200 ~L~y~Ps~IAlAAI~lA~~~~~ 221 (305)
T TIGR00569 200 YLLYTPSQIALAAILHTASRAG 221 (305)
T ss_pred eecCCHHHHHHHHHHHHHHHhC
Confidence 8889999999999999999884
No 9
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=99.43 E-value=2.4e-12 Score=125.70 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=132.6
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccc----ccc
Q 043577 202 KDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYV----VSK 277 (402)
Q Consensus 202 ~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~----vsK 277 (402)
.+-....|..-++||.+-+--++|...+.+.+..+|-||+....+-+-++..++++|++||.|+||+..++-. +..
T Consensus 16 ~e~e~el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~ 95 (367)
T KOG0835|consen 16 LETEEELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEEPRRIRDVINVFHY 95 (367)
T ss_pred cchHHHHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccccccHhHHHHHHHH
Confidence 3556788999999999999999999999999999999999999999999999999999999666666532111 000
Q ss_pred cccc----C-Cccc--------------------cchhhhccch----HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccc
Q 043577 278 YEEI----C-PPQV--------------------EELCYITDNT----RFIRAAQRSNKAPSMQFECLANYILELSLLDY 328 (402)
Q Consensus 278 ~EEi----~-~p~l--------------------~df~~itd~~----~FL~~~~~~~~~~~~~l~~la~yllElsL~d~ 328 (402)
+++. . .+.+ +++-+.++-. .|+.+++.+.-.+...+.+.++-++..++-.-
T Consensus 96 L~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~ 175 (367)
T KOG0835|consen 96 LEQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTD 175 (367)
T ss_pred HHHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccc
Confidence 1110 0 0000 0000000000 33344444444445567889999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHhC---CCCCCChHHHHHhhCCChhhHHHHHHHHHHHHhh
Q 043577 329 KMLCYSPSLIAASATFLANFILY---PLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCD 385 (402)
Q Consensus 329 ~fl~~~PS~IAaAai~lA~~~l~---~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~ 385 (402)
-|..|+|+.||+|||++|.+.+. +..+.| -.+.+.+.+++.+.+-.+..+|..
T Consensus 176 v~vry~pe~iACaciyLaAR~~eIpLp~~P~W----f~~Fd~~k~eid~ic~~l~~lY~~ 231 (367)
T KOG0835|consen 176 VFVRYSPESIACACIYLAARNLEIPLPFQPHW----FKAFDTTKREIDEICYRLIPLYKR 231 (367)
T ss_pred eeeecCHHHHHHHHHHHHHhhhcCCCCCCccH----HHHcCCcHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999985 344455 556689999999999999999987
No 10
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=8.6e-13 Score=130.95 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=133.9
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhccccccccccccccc
Q 043577 198 DRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSK 277 (402)
Q Consensus 198 ~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK 277 (402)
.++..+-....|.....||.+++..+++..-|+..|+.|++||+...++.....+.+|++|||||+|+||.. -|
T Consensus 28 ~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEetp------~k 101 (323)
T KOG0834|consen 28 DGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEETP------RK 101 (323)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcccCc------cc
Confidence 333444556889999999999999999999999999999999999999999999999999999998888776 44
Q ss_pred ccccC-------Cc---cccch-------hhhcc--------------c-hHHH-HHHHhhCCCCc--HHHHHHHHHHHH
Q 043577 278 YEEIC-------PP---QVEEL-------CYITD--------------N-TRFI-RAAQRSNKAPS--MQFECLANYILE 322 (402)
Q Consensus 278 ~EEi~-------~p---~l~df-------~~itd--------------~-~~FL-~~~~~~~~~~~--~~l~~la~yllE 322 (402)
++++. .| ...+. +...+ . ..|| +.........+ ..+..+|+.++.
T Consensus 102 l~dIi~~s~~~~~~~~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~~~~a~~Aw~~~n 181 (323)
T KOG0834|consen 102 LEDIIKVSYRYLNPKDLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLKQPLAQAAWNFVN 181 (323)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhccccHHHHHHHHhc
Confidence 44431 11 01000 00000 0 0222 33333332222 246788999998
Q ss_pred HhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHH-HHHhhC--CChhhHHHHHHHHHHHHhhCC
Q 043577 323 LSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNST-LGHYTF--YQPSDLCDCVKALHRLFCDGG 387 (402)
Q Consensus 323 lsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~-L~~~tg--y~~~~L~~C~~~L~~l~~~~~ 387 (402)
-++...-.++|.|.+||+|||++|....+-..+.|... .....+ ++.++|.+.+..+..+|.+..
T Consensus 182 D~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~l~~y~~~~ 249 (323)
T KOG0834|consen 182 DSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEFLDLYEQTP 249 (323)
T ss_pred hhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHHHHHHhhcc
Confidence 89998899999999999999999999986333333333 344556 899999999999999997653
No 11
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.16 E-value=3.9e-11 Score=94.33 Aligned_cols=74 Identities=36% Similarity=0.598 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCcccc
Q 043577 208 MRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVE 287 (402)
Q Consensus 208 ~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~ 287 (402)
+|..+++||.+++..++++++|+++|+.|+|||+....+.+.+++++|++||+|| +|++|. ++..+
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA-------------~k~~~~-~~~~~ 66 (88)
T cd00043 1 MRPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLA-------------AKVEEI-PPWLK 66 (88)
T ss_pred CcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH-------------HHHcCC-CCCHH
Confidence 3778999999999999999999999999999999999999999999999999999 999888 78888
Q ss_pred chhhhccc
Q 043577 288 ELCYITDN 295 (402)
Q Consensus 288 df~~itd~ 295 (402)
+++.+++.
T Consensus 67 ~~~~~~~~ 74 (88)
T cd00043 67 DLVHVTGY 74 (88)
T ss_pred HHhHHhCC
Confidence 88877655
No 12
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=99.15 E-value=2.1e-10 Score=107.59 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhccccccc-ccccc-----------cc
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKW-KSDYV-----------VS 276 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~-~~~~~-----------vs 276 (402)
+--.-+.+..+++++++...++..|+.||-||+.++++..-.+.|+|.||+++|+|+||-- ...-. .+
T Consensus 41 ~i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~ 120 (264)
T KOG0794|consen 41 KIFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFS 120 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcc
Confidence 4444566888999999999999999999999999999988899999999999997777653 10000 00
Q ss_pred cccccCCcccc-------------chhhhccch--HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHH
Q 043577 277 KYEEICPPQVE-------------ELCYITDNT--RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAAS 341 (402)
Q Consensus 277 K~EEi~~p~l~-------------df~~itd~~--~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaA 341 (402)
-..|..++... |.+.+..+. ..++.++... ..+..+.++++.+..-++...-.+-|+|-+||.|
T Consensus 121 ~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~g-i~d~~~l~~~W~ivNDSyr~Dl~Ll~PPh~IalA 199 (264)
T KOG0794|consen 121 YWPEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMG-INDQKLLQLAWSIVNDSYRMDLCLLYPPHQIALA 199 (264)
T ss_pred cchhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhc-ccchhhhhhhHhhhcchhhcceeeecCHHHHHHH
Confidence 01122222221 112222222 2223333322 2345577899999988888888889999999999
Q ss_pred HHHHHHHHhCCCC-CCChHHHHHhhCCChhhHHHHHHHHHHHHhhC
Q 043577 342 ATFLANFILYPLK-KPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386 (402)
Q Consensus 342 ai~lA~~~l~~~~-~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~~ 386 (402)
||++|....+.+. ..|...+ ..+.+.+.+|++.+..+|..-
T Consensus 200 cl~Ia~~~~~k~~~~~w~~el----~vD~ekV~~~v~~I~~lYe~w 241 (264)
T KOG0794|consen 200 CLYIACVIDEKDIPKAWFAEL----SVDMEKVKDIVQEILKLYELW 241 (264)
T ss_pred HHHHHHhhcCCChHHHHHHHH----hccHHHHHHHHHHHHHHHHHH
Confidence 9999998875333 4465555 589999999999999988754
No 13
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.90 E-value=1.4e-09 Score=84.57 Aligned_cols=68 Identities=38% Similarity=0.529 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhc
Q 043577 214 DWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYIT 293 (402)
Q Consensus 214 dWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~it 293 (402)
+||.+++..++++++|.++|+.++|||+....+.+.+.+++|++|++|| +|++|.. +...+++.++
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA-------------~k~~~~~-~~~~~~~~~~ 66 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLA-------------AKTEEIP-PWTKELVHYT 66 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHH-------------HHHhcCC-CCchhHhHhh
Confidence 5999999999999999999999999999987777899999999999999 8888875 4556666555
Q ss_pred cc
Q 043577 294 DN 295 (402)
Q Consensus 294 d~ 295 (402)
+.
T Consensus 67 ~~ 68 (83)
T smart00385 67 GY 68 (83)
T ss_pred CC
Confidence 44
No 14
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=98.84 E-value=1.8e-08 Score=98.50 Aligned_cols=151 Identities=15% Similarity=0.204 Sum_probs=105.6
Q ss_pred CChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccc--ccccccc-cc--c
Q 043577 204 INPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNK--WKSDYVV-SK--Y 278 (402)
Q Consensus 204 it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~--~~~~~~v-sK--~ 278 (402)
-+.+.|..-..|+..+|.+++|...++.+||.+++||+.+..+..-.++-|+.||+++|+|+||. .=++-.. .+ +
T Consensus 40 ~e~~l~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~ 119 (297)
T COG5333 40 KELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLW 119 (297)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccccchhhHHHHHhhccc
Confidence 34567777789999999999999999999999999999999999999999999999999666662 1100000 00 0
Q ss_pred ccc---CCcccc----------chhhhccch-----HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHH
Q 043577 279 EEI---CPPQVE----------ELCYITDNT-----RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAA 340 (402)
Q Consensus 279 EEi---~~p~l~----------df~~itd~~-----~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAa 340 (402)
-|. ..-.+- +|-+...+. .|+..++.... .+...+|+-++.-++...-++.|+|..||+
T Consensus 120 se~~~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~---~~~~~~aw~~inDa~~t~~~llypphiIA~ 196 (297)
T COG5333 120 SEEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDK---YKLLQIAWKIINDALRTDLCLLYPPHIIAL 196 (297)
T ss_pred cccccccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhccH---HHHHHHHHHHHHhhhhceeeeecChHHHHH
Confidence 000 000010 110011111 34444433322 456788998998899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCChH
Q 043577 341 SATFLANFILYPLKKPWNS 359 (402)
Q Consensus 341 Aai~lA~~~l~~~~~~W~~ 359 (402)
||++.|...+ +.+.|..
T Consensus 197 a~l~ia~~~~--~~~~~~~ 213 (297)
T COG5333 197 AALLIACEVL--GMPIIKL 213 (297)
T ss_pred HHHHHHHHhc--CCccchh
Confidence 9999999998 4455544
No 15
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=98.67 E-value=9.7e-07 Score=88.04 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchh
Q 043577 211 ILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELC 290 (402)
Q Consensus 211 ~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~ 290 (402)
....-|.+++..++|+..+.-.|..|+.++.....+.......++++|||+| +|.++. |-+++|++
T Consensus 124 ~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiA-------------CR~~~~-prtl~eI~ 189 (310)
T PRK00423 124 FALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAA-------------CRRCKV-PRTLDEIA 189 (310)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH-------------HHHcCC-CcCHHHHH
Confidence 3445678899999999999999999999999998888888999999999999 554443 33444443
Q ss_pred hhccch-------------------------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHH
Q 043577 291 YITDNT-------------------------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFL 345 (402)
Q Consensus 291 ~itd~~-------------------------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~l 345 (402)
.++.-. .|+..+....+.+ ..+...|.+++..+.-.--..+..|..|||||||+
T Consensus 190 ~~~~v~~k~i~~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~-~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYl 268 (310)
T PRK00423 190 EVSRVSRKEIGRCYRFLLRELNLKLPPTDPIDYVPRFASELGLS-GEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYI 268 (310)
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 332211 5555554443332 35677888888766544345689999999999999
Q ss_pred HHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHH
Q 043577 346 ANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLF 383 (402)
Q Consensus 346 A~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~ 383 (402)
|.+.. +.+.-...+...+|++...++..++.|.+.+
T Consensus 269 A~~~~--g~~~t~keIa~v~~Vs~~tI~~~ykel~~~l 304 (310)
T PRK00423 269 ASLLL--GERRTQREVAEVAGVTEVTVRNRYKELAEKL 304 (310)
T ss_pred HHHHh--CCCCCHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 99887 3444566788899999999999999998754
No 16
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.55 E-value=4.6e-07 Score=70.28 Aligned_cols=80 Identities=38% Similarity=0.472 Sum_probs=68.0
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCC-ChhhHHHHH
Q 043577 298 FIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFY-QPSDLCDCV 376 (402)
Q Consensus 298 FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy-~~~~L~~C~ 376 (402)
|++.+....+. ...+..+|.++++..+.++.+.+++|+.+|+||+++|.++. +...|...+..++|+ +.+++.+|.
T Consensus 2 ~l~~~~~~~~~-~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (83)
T smart00385 2 FLRRVCKALNL-DPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTE--EIPPWTKELVHYTGYFTEEEILRME 78 (83)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHh--cCCCCchhHhHhhCCCCHHHHHHHH
Confidence 56665554443 34678999999999999999999999999999999999998 345899999999999 999999998
Q ss_pred HHHH
Q 043577 377 KALH 380 (402)
Q Consensus 377 ~~L~ 380 (402)
..|.
T Consensus 79 ~~il 82 (83)
T smart00385 79 KLLL 82 (83)
T ss_pred HHHh
Confidence 8775
No 17
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.09 E-value=3.3e-05 Score=60.23 Aligned_cols=80 Identities=35% Similarity=0.429 Sum_probs=67.3
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCC-ChhhHHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFY-QPSDLCDC 375 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy-~~~~L~~C 375 (402)
.|++.+....+. ......+|.++++..+....+..+.|+.+|+||+++|.++. +...|...+..++++ +.+++..+
T Consensus 7 ~~l~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~--~~~~~~~~~~~~~~~~~~~~i~~~ 83 (88)
T cd00043 7 DFLRRVAKALGL-SPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVE--EIPPWLKDLVHVTGYATEEEILRM 83 (88)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHc--CCCCCHHHHhHHhCCCCHHHHHHH
Confidence 466665554433 34678899999999999999999999999999999999998 348999999999999 99999988
Q ss_pred HHHH
Q 043577 376 VKAL 379 (402)
Q Consensus 376 ~~~L 379 (402)
...|
T Consensus 84 e~~i 87 (88)
T cd00043 84 EKLL 87 (88)
T ss_pred HHHh
Confidence 7665
No 18
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=97.88 E-value=0.00027 Score=69.36 Aligned_cols=57 Identities=12% Similarity=0.320 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhc--CcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhccccc
Q 043577 211 ILIDWLVEVSEEY--RLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDN 267 (402)
Q Consensus 211 ~LVdWL~eV~~~~--~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee 267 (402)
.-..-+++.+..| .+.+.++..|+.+|-||+-.+++..-....|-+||+|+|+|++|
T Consensus 58 ~~E~~l~~f~~k~~p~lp~~Vv~TA~~fFkRffL~nsvme~~pk~I~~tc~flA~Kiee 116 (325)
T KOG2496|consen 58 EEELSLVNFYSKFKPNLPTSVVSTAIEFFKRFFLENSVMEYSPKIIMATCFFLACKIEE 116 (325)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHhhhHh
Confidence 3344456666665 67899999999999999999999888999999999999955554
No 19
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=97.72 E-value=0.00054 Score=67.09 Aligned_cols=151 Identities=16% Similarity=0.131 Sum_probs=112.1
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccc
Q 043577 216 LVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDN 295 (402)
Q Consensus 216 L~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~ 295 (402)
+..+++..+|..-.--.|-.+|-++-..+.......+-++++||+|| ++-++. |-++++++.++.-
T Consensus 111 I~~m~d~~~Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiA-------------CRq~~~-pRT~kEI~~~anv 176 (308)
T KOG1597|consen 111 ITAMCDRLSLPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIA-------------CRQEDV-PRTFKEISAVANV 176 (308)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHH-------------HHhcCC-CchHHHHHHHHcC
Confidence 56788999999999999999999999777788888999999999999 444433 3344444333321
Q ss_pred ---------------------------hHHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHH
Q 043577 296 ---------------------------TRFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANF 348 (402)
Q Consensus 296 ---------------------------~~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~ 348 (402)
.+|+.+|-..... ..+....|.++.+-+---....+=.|=.||||+||++.+
T Consensus 177 ~kKEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L-~~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisq 255 (308)
T KOG1597|consen 177 SKKEIGRCVKLIGEALETSVDLISISTGDFMPRFCSNLGL-PKSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQ 255 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHH
Confidence 1677766554433 345667788888755433334457899999999999998
Q ss_pred HhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHH
Q 043577 349 ILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLF 383 (402)
Q Consensus 349 ~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~ 383 (402)
+. ..+.-...+...+|+.+..++.-++.|+...
T Consensus 256 ls--~~kkt~keI~~vtgVaE~TIr~sYK~Lyp~~ 288 (308)
T KOG1597|consen 256 LS--DEKKTQKEIGEVTGVAEVTIRNSYKDLYPHA 288 (308)
T ss_pred hc--cCcccHHHHHHHhhhhHHHHHHHHHHHhhch
Confidence 87 4666778899999999999999999888643
No 20
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=97.44 E-value=0.0036 Score=61.91 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccc
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEE 288 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~d 288 (402)
-.....-|-.++..++|+....-.|..++=+.+.+.-+.....+-++++|+++|++..+......-+++.-.+....+..
T Consensus 97 l~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~V~~kei~r 176 (285)
T COG1405 97 LITALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALGVSKKEIGR 176 (285)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHH
Confidence 34556667788999999999999999999999998888888899999999999955554432111111111111100000
Q ss_pred --------h---hhhccchHHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 043577 289 --------L---CYITDNTRFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPW 357 (402)
Q Consensus 289 --------f---~~itd~~~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W 357 (402)
+ .-..+...|+..+....+.+ ..+...|..|+..+.-.-.-.+=.|+-||+||+|+|..+. +...-
T Consensus 177 tyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~-~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as~l~--~~~~t 253 (285)
T COG1405 177 TYRLLVRELKLKIPPVDPSDYIPRFASKLGLS-DEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLASLLL--GERRT 253 (285)
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHh--CCchH
Confidence 0 00012226666665555444 5677888888888777767779999999999999999988 46667
Q ss_pred hHHHHHhhCCChhhHHHHHHHHHHHH
Q 043577 358 NSTLGHYTFYQPSDLCDCVKALHRLF 383 (402)
Q Consensus 358 ~~~L~~~tgy~~~~L~~C~~~L~~l~ 383 (402)
......++|+++..|+.=.+.|.+.+
T Consensus 254 q~eva~v~~vtevTIrnrykel~~~~ 279 (285)
T COG1405 254 QKEVAKVAGVTEVTIRNRYKELADAL 279 (285)
T ss_pred HHHHHHHhCCeeeHHHHHHHHHHHhh
Confidence 77889999999999988776666543
No 21
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=95.12 E-value=0.038 Score=49.27 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHhhhhc---c--ccccccccchhhHHHHHhhcccccccccccccccccccCCccc
Q 043577 212 LIDWLVEVSEEYRLVPETLFLAVNYIDRYLS---G--NVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQV 286 (402)
Q Consensus 212 LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs---~--~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l 286 (402)
+.+|+.++....+++++++.+|..|+||+.. . ..+......-+-++||.+| +||-+-....-
T Consensus 54 i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA-------------~K~~~D~~~~n 120 (149)
T PF08613_consen 54 IRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILA-------------SKFLDDNTYSN 120 (149)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHH-------------HHHH-SS---H
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHH-------------HhhcccccccH
Confidence 7889999999999999999999999999998 2 2356666788889999999 88766555444
Q ss_pred cchhhh
Q 043577 287 EELCYI 292 (402)
Q Consensus 287 ~df~~i 292 (402)
+.|+.+
T Consensus 121 ~~~a~v 126 (149)
T PF08613_consen 121 KSWAKV 126 (149)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 444443
No 22
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription]
Probab=94.73 E-value=0.18 Score=53.30 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=91.0
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCcccc-ch----
Q 043577 215 WLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVE-EL---- 289 (402)
Q Consensus 215 WL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~-df---- 289 (402)
-|-+++..+++.. .+-.|.++|-.-++.+=.+....++|-.+||+|+++.+....-.-.++-|..+....+- .|
T Consensus 73 ~i~~~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vcR~e~t~hlliDfS~~Lqv~Vy~LG~~~l~l~ 151 (521)
T KOG1598|consen 73 LIEELTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVCRLEKTDHLLIDFSSYLQVSVYDLGSNFLEVT 151 (521)
T ss_pred HHHHHHHhcCcch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhhCCceEEEEeccceEEehhhhhHHHHHHH
Confidence 3568889999998 88899999998888877888889999999999997777665422111222222221111 11
Q ss_pred --hhhccch-----------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHh
Q 043577 290 --CYITDNT-----------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFIL 350 (402)
Q Consensus 290 --~~itd~~-----------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l 350 (402)
.++..+- +|...+...... ..+...|.+|+.-..-|--+..=+|+-|+-|||++|.++.
T Consensus 152 ~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~--~~Vv~~a~~L~~rMkrdwm~tGRRPsglcGAaLliAar~h 223 (521)
T KOG1598|consen 152 DSLSIGENVSPLVDPSLYIVRFSCRLLFGDKT--EDVAKTATRLAQRMKRDWMQTGRRPSGLCGAALLIAARMH 223 (521)
T ss_pred HHhccccccccccCcceeeechhHhhhcCCch--HHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHHc
Confidence 1122111 555555443332 4566778888876667777788999999999999999997
No 23
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=92.98 E-value=0.18 Score=39.01 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhh
Q 043577 216 LVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMIS 262 (402)
Q Consensus 216 L~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IA 262 (402)
|-+++..++|+..+.-.|..++++-....-.......-++++|+++|
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~a 47 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLA 47 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHH
Confidence 45789999999999999999999988877677777899999999999
No 24
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=91.27 E-value=1.9 Score=33.26 Aligned_cols=59 Identities=15% Similarity=-0.024 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhH
Q 043577 312 QFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDL 372 (402)
Q Consensus 312 ~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L 372 (402)
.+...|..+.+.+.-..-..+-.|..+|+||+|+|.+.. +.+.-...+...+|++..++
T Consensus 13 ~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~--~~~~t~~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 13 DVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLN--GVPRTLKEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHT--TSSSSHHHHHHHCTSSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHc--CCCcCHHHHHHHhCCCCCcC
Confidence 567788888876655554567889999999999999987 44445566777777776543
No 25
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=90.08 E-value=0.061 Score=54.84 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccc
Q 043577 207 GMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQV 286 (402)
Q Consensus 207 ~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l 286 (402)
++|. |-.=|.++....++..-|+..|..||....-+..+++.+-.|+|-+||++| +||.+..--.+
T Consensus 381 KirS-lKREMr~l~~d~~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAclLla-------------aKmnD~Kks~v 446 (497)
T KOG4164|consen 381 KIRS-LKREMRELGEDCGIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACLLLA-------------AKMNDLKKSTV 446 (497)
T ss_pred HHHH-HHHHHHHhhhccCccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-------------HHhhhhhhHHH
Confidence 4444 445588999999999999999999999999999999999999999999999 66665544444
Q ss_pred cch
Q 043577 287 EEL 289 (402)
Q Consensus 287 ~df 289 (402)
+.+
T Consensus 447 Ksl 449 (497)
T KOG4164|consen 447 KSL 449 (497)
T ss_pred HHH
Confidence 443
No 26
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=78.86 E-value=20 Score=29.87 Aligned_cols=83 Identities=20% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhh--CCChhhHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYT--FYQPSDLCD 374 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~t--gy~~~~L~~ 374 (402)
+|+.......+ .......+|.++.+.-+.........+..+|++|+++|.++.. ...++...+..++ .|+.++|..
T Consensus 36 ~~i~~~~~~~~-l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~e-~~~~~~~~~~~~~~~~~~~~~i~~ 113 (127)
T PF00134_consen 36 DWIIELCQRLK-LSPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKMEE-DNPPSISDLIRISDNTFTKKDILE 113 (127)
T ss_dssp HHHHHHHHHTT--BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHHT-SS--HHHHHHHHTTTSSHHHHHHH
T ss_pred HHHHHHHHhcc-cchhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhhc-cccchHHHHHHHHcCCCCHHHHHH
Confidence 45544444333 2345667787788777776678889999999999999999983 4456677777766 367777765
Q ss_pred HHHHHHH
Q 043577 375 CVKALHR 381 (402)
Q Consensus 375 C~~~L~~ 381 (402)
.=..+..
T Consensus 114 ~E~~iL~ 120 (127)
T PF00134_consen 114 MEREILS 120 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 27
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=76.87 E-value=27 Score=34.95 Aligned_cols=71 Identities=13% Similarity=-0.017 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHh
Q 043577 312 QFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 312 ~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~ 384 (402)
.+...|..+...+.-...+-+...-.+||||||+|.+.. +.+.--..+..+++.+..+|..+.+.|.+.+.
T Consensus 141 ~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~--~~prtl~eI~~~~~v~~k~i~~~~~~l~k~L~ 211 (310)
T PRK00423 141 SVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRC--KVPRTLDEIAEVSRVSRKEIGRCYRFLLRELN 211 (310)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHc--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 345566666655554444567889999999999999986 33444456788889999999999999998774
No 28
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=56.24 E-value=14 Score=30.11 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhh
Q 043577 213 IDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMIS 262 (402)
Q Consensus 213 VdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IA 262 (402)
.+||.......+...++-++|-.+++..+....+-.-.--+||++|+++|
T Consensus 4 ~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA 53 (118)
T PF02984_consen 4 YDFLRRFLKISNADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLA 53 (118)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHH
Confidence 45666664445567788899999999877776777777889999999999
No 29
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=46.30 E-value=34 Score=34.04 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhh
Q 043577 211 ILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMIS 262 (402)
Q Consensus 211 ~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IA 262 (402)
.-.+++-..+..++|+.++--.|+.+++..............=+|++|++||
T Consensus 193 ~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~a 244 (285)
T COG1405 193 DPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLA 244 (285)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHH
Confidence 3467788999999999999999999999999887777778889999999999
No 30
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=44.45 E-value=51 Score=32.94 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHhh
Q 043577 333 YSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCD 385 (402)
Q Consensus 333 ~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~ 385 (402)
-.--.|+|||||.|.+.. ..+--...+..+++++..++..|++.|.+-+..
T Consensus 144 ks~eai~AAclyiACRq~--~~pRT~kEI~~~anv~kKEIgr~~K~i~~~l~~ 194 (308)
T KOG1597|consen 144 KSVEALAAACLYIACRQE--DVPRTFKEISAVANVSKKEIGRCVKLIGEALET 194 (308)
T ss_pred ccHHHHHHHHHHHHHHhc--CCCchHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 444678999999999886 444455667778899999999999999886553
No 31
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=37.94 E-value=23 Score=35.83 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhh
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMIS 262 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IA 262 (402)
-.-|++|+..+-..-+........|.+++...+...-+-+-..+-||++||+||
T Consensus 152 y~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA 205 (323)
T KOG0834|consen 152 YKYLLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLA 205 (323)
T ss_pred hHHHHHHHHHhhhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHH
Confidence 456778888777776666667788888888888776677778899999999999
No 32
>KOG1674 consensus Cyclin [General function prediction only]
Probab=36.78 E-value=42 Score=31.96 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHhhhhcccc---cc------ccc-cchhhHHHHHhh
Q 043577 212 LIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNV---II------RQQ-LQLLGVACMMIS 262 (402)
Q Consensus 212 LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~---v~------~~~-LQLvgitCL~IA 262 (402)
+-+++.++..+-+.+++++.+|..|||||....+ +. --. ..-+=++|+.+|
T Consensus 78 i~~yleri~k~~~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs 138 (218)
T KOG1674|consen 78 IRQYLERIFKYSKCSPECLVLALVYLDRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVS 138 (218)
T ss_pred hHHHHHHHHHHhcCCchhhhhhhhhhhhhhhhhcccccCcccccccchhHHHHHHHHHHHH
Confidence 3456678888999999999999999999998622 11 111 333567899999
No 33
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=36.09 E-value=54 Score=33.36 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=40.2
Q ss_pred hcCcchHH--HHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccc
Q 043577 222 EYRLVPET--LFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEE 288 (402)
Q Consensus 222 ~~~L~~eT--l~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~d 288 (402)
.+++.++- +..+.|||.--|.....-+..-.+||++|.++| ++-.||-.|....
T Consensus 151 tL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyLa-------------AR~~eIpLp~~P~ 206 (367)
T KOG0835|consen 151 TLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYLA-------------ARNLEIPLPFQPH 206 (367)
T ss_pred HhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHHH-------------HhhhcCCCCCCcc
Confidence 34554433 677788888888887888888999999999999 7777765444443
No 34
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=35.81 E-value=3e+02 Score=24.13 Aligned_cols=44 Identities=14% Similarity=-0.054 Sum_probs=31.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHH
Q 043577 331 LCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDC 375 (402)
Q Consensus 331 l~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C 375 (402)
.....--+=++|+.+|.++++ +...|+.....++|++..+|...
T Consensus 94 ~~~~~~Rl~l~alilA~K~~~-D~~~~n~~~a~v~gis~~eln~l 137 (149)
T PF08613_consen 94 NSSNIHRLFLTALILASKFLD-DNTYSNKSWAKVGGISLKELNEL 137 (149)
T ss_dssp STTTHHHHHHHHHHHHHHHH--SS---HHHHHHHHTS-HHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhcc-cccccHHHHHhhcCCCHHHHHHH
Confidence 345666788889999999984 66778999999999999888543
No 35
>PF09080 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IPR015164 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This domain adopts a secondary structure consisting of a five alpha-helix cyclin fold. Interaction with cyclin dependent kinases (CDKs) at a PSTAIRE sequence motif within the catalytic cleft of CDK results in the regulation of CDK activity []. ; PDB: 1G3N_C.
Probab=26.09 E-value=3.8e+02 Score=22.18 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHHHhcccccccCCCHHHHHHH-HHHHHHHHhCCCCC---CChHHHHHhhCCChhhHHHHHHHHHHHHhh
Q 043577 320 ILELSLLDYKMLCYSPSLIAAS-ATFLANFILYPLKK---PWNSTLGHYTFYQPSDLCDCVKALHRLFCD 385 (402)
Q Consensus 320 llElsL~d~~fl~~~PS~IAaA-ai~lA~~~l~~~~~---~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~ 385 (402)
+..-++.|+.--..+||+||+| |-++..-..-+... -.-..|....|.+...|..-++.+..-++.
T Consensus 32 ~v~KAiV~P~TG~Lp~SlvaAA~CAL~~~~~~~P~~~~~~~~~~~LA~~~G~~~a~L~AA~E~v~Tt~~e 101 (106)
T PF09080_consen 32 SVHKAIVNPKTGGLPPSLVAAAGCALFSLGAAAPPDTHSGGVVPQLAEALGVSAATLQAAAESVATTLRE 101 (106)
T ss_dssp HHHHHHCSTTGGGS-HHHHHHHHHHHHS-GGGS--------HHHHHHHHHT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccCCCCHHHHHHhhhhhccccccCCCccccccchHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 4445889999999999999998 55554322211100 112378889999999999999888766554
No 36
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=22.36 E-value=97 Score=24.99 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhh
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYL 241 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfL 241 (402)
=..+||||++... ..-..|.+.++-.++|.=+
T Consensus 33 GselVdWL~~~~~-~~sR~eAv~lg~~Ll~~G~ 64 (83)
T cd04443 33 GCDLVSWLIEVGL-AQDRGEAVLYGRRLLQGGV 64 (83)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCC
Confidence 4579999998532 2334578888887777633
No 37
>PF14376 Haem_bd: Haem-binding domain
Probab=21.25 E-value=1e+02 Score=27.14 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhhhhhhcCCCCcchhhhcCCC--CChhhHHHHHHHHHH
Q 043577 172 IACDIYKNLRASEDFQAKKRPSLDFMDRVQKD--INPGMRAILIDWLVE 218 (402)
Q Consensus 172 Y~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~--it~~~R~~LVdWL~e 218 (402)
...+|.+.+...| .|...|+- ++++ ++.+.|..|++|+-+
T Consensus 94 ~l~~i~~~I~~g~------MP~~~Y~~-~H~~a~Ls~~ek~~Ll~Wi~~ 135 (137)
T PF14376_consen 94 KLAKIEEVIEDGE------MPPPSYTL-LHWEAKLSEEEKQALLNWIKE 135 (137)
T ss_pred HHHHHHHHHHcCC------CChHHHhh-hCCCCCCCHHHHHHHHHHHHH
Confidence 3455555554444 78888887 4765 999999999999965
No 38
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=21.13 E-value=1.1e+02 Score=24.67 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhcccc
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNV 245 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~ 245 (402)
=..+|+||++-.....-..|++.++-.+++.=+-.+.
T Consensus 32 GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV 68 (84)
T cd04438 32 GSDLVDWLLSHVEGLTDRREARKYASSLLKLGYIRHT 68 (84)
T ss_pred chHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEEec
Confidence 4579999998666555567888888888877554433
No 39
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=20.58 E-value=1.1e+02 Score=24.80 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhc
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLS 242 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs 242 (402)
=..+||||++-. ...-..|++.++-.++|.=+-
T Consensus 35 GsElVdWL~~~~-~~~sR~eAv~lgq~Ll~~gii 67 (85)
T cd04441 35 GSEFIDWLLQEG-EAESRREAVQLCRRLLEHGII 67 (85)
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCE
Confidence 458999999965 344456777777777776443
No 40
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=20.28 E-value=7.2e+02 Score=24.94 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHh
Q 043577 314 ECLANYILELSLLDYKMLCYSPSLIAASATFLANFIL 350 (402)
Q Consensus 314 ~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l 350 (402)
...|..+..--++...+..|.|-.||++|+++|.+.-
T Consensus 79 iaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvE 115 (305)
T TIGR00569 79 VGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVE 115 (305)
T ss_pred HHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhcc
Confidence 3344444434455566778999999999999999876
Done!