Query 043577
Match_columns 402
No_of_seqs 257 out of 1522
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 3.5E-44 1.2E-48 344.8 18.6 215 169-402 3-245 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 2.1E-43 7.1E-48 341.3 15.3 215 167-402 1-244 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 2.7E-41 9.3E-46 324.1 18.1 217 158-393 6-256 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 1.1E-40 3.7E-45 319.4 20.9 210 159-387 8-250 (254)
5 3g33_B CCND3 protein; Ser/Thr 100.0 7.5E-39 2.6E-43 315.1 19.2 206 162-386 29-268 (306)
6 1f5q_B Gamma herpesvirus cycli 100.0 1.5E-38 5E-43 305.2 14.4 204 157-388 8-245 (252)
7 1w98_B Cyclin E, G1/S-specific 100.0 1.6E-37 5.6E-42 302.3 17.1 212 162-400 7-259 (283)
8 2w96_A G1/S-specific cyclin-D1 100.0 3.7E-37 1.3E-41 297.6 18.3 211 159-388 13-260 (271)
9 2i53_A Cyclin K; cell cycle, t 99.9 1.7E-27 5.9E-32 227.5 11.9 182 193-388 25-254 (258)
10 2ivx_A Cyclin-T2; transcriptio 99.9 5.7E-27 2E-31 224.1 13.9 185 197-399 19-253 (257)
11 3rgf_B Cyclin-C; protein kinas 99.9 4.8E-26 1.6E-30 221.6 12.4 180 205-402 39-263 (285)
12 2pk2_A Cyclin-T1, protein TAT; 99.9 1.9E-25 6.4E-30 224.2 10.9 181 198-396 27-257 (358)
13 1zp2_A RNA polymerase II holoe 99.9 2E-24 6.8E-29 204.1 11.0 161 209-387 28-222 (235)
14 1jkw_A Cyclin H; cell cycle, c 99.9 2.8E-23 9.6E-28 205.6 15.1 180 204-397 52-276 (323)
15 1c9b_A General transcription f 99.8 3.7E-18 1.3E-22 157.9 15.8 161 207-384 3-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.6 2E-14 6.7E-19 132.0 16.1 161 207-384 7-194 (200)
17 3k7a_M Transcription initiatio 99.1 2.8E-11 9.7E-16 120.5 5.1 158 209-383 126-320 (345)
18 4bbr_M Transcription initiatio 98.2 2E-06 6.8E-11 85.6 7.1 157 210-383 127-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 93.5 0.11 3.7E-06 50.3 6.3 67 211-290 76-145 (293)
20 1ais_B TFB TFIIB, protein (tra 92.7 0.8 2.7E-05 40.9 10.7 85 297-384 14-98 (200)
21 1c9b_A General transcription f 90.7 1.6 5.5E-05 39.1 10.4 85 297-384 10-94 (207)
22 1zp2_A RNA polymerase II holoe 80.5 13 0.00043 33.9 10.9 85 297-384 33-126 (235)
23 4bbr_M Transcription initiatio 71.4 14 0.00049 36.0 9.0 71 312-384 145-215 (345)
24 2b9r_A Human cyclin B1; cell c 68.8 33 0.0011 31.9 10.6 86 297-384 43-130 (269)
25 2w96_A G1/S-specific cyclin-D1 64.4 48 0.0017 30.6 10.8 86 297-384 62-149 (271)
26 3k7a_M Transcription initiatio 61.9 6.3 0.00022 38.4 4.2 71 312-384 145-215 (345)
27 3rgf_B Cyclin-C; protein kinas 60.4 61 0.0021 30.3 10.7 86 297-384 48-149 (285)
28 2cch_B Cyclin A2, cyclin-A; co 60.3 36 0.0012 31.3 9.0 86 297-384 44-131 (260)
29 2f2c_A Cyclin homolog, V-cycli 59.0 49 0.0017 30.2 9.7 86 297-384 57-144 (254)
30 1g3n_C V-cyclin; cyclin-depend 58.5 47 0.0016 30.4 9.5 86 297-384 56-143 (257)
31 2i53_A Cyclin K; cell cycle, t 54.1 18 0.0006 33.2 5.7 52 214-265 153-208 (258)
32 3g33_B CCND3 protein; Ser/Thr 53.8 62 0.0021 30.7 9.7 71 313-384 91-163 (306)
33 1w98_B Cyclin E, G1/S-specific 51.9 84 0.0029 29.3 10.2 86 297-384 55-143 (283)
34 1jkw_A Cyclin H; cell cycle, c 47.8 1.3E+02 0.0044 28.7 10.9 53 297-350 62-116 (323)
35 2pmi_B PHO85 cyclin PHO80, ami 43.3 1.6E+02 0.0056 28.1 10.6 85 297-383 79-166 (293)
36 3h4c_A Transcription factor TF 41.6 2.1E+02 0.0071 26.2 12.4 52 211-262 14-68 (260)
37 2ivx_A Cyclin-T2; transcriptio 40.2 64 0.0022 29.4 7.1 53 297-350 36-88 (257)
38 2pk2_A Cyclin-T1, protein TAT; 38.1 62 0.0021 31.6 7.0 53 297-350 43-95 (358)
39 3m03_A ORC6, origin recognitio 29.3 1.3E+02 0.0044 23.9 6.2 52 332-385 42-93 (95)
40 1f5q_B Gamma herpesvirus cycli 27.2 3.3E+02 0.011 24.9 9.7 71 313-384 69-141 (252)
41 2igp_A Retinoblastoma-associat 24.2 1.4E+02 0.0047 24.5 5.8 51 170-223 69-119 (120)
42 1fs1_B SKP1, cyclin A/CDK2-ass 21.6 86 0.003 26.1 4.1 29 223-262 87-118 (141)
43 1uhw_A Pleckstrin; three-helix 21.2 80 0.0027 25.7 3.6 32 209-241 40-71 (109)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=3.5e-44 Score=344.81 Aligned_cols=215 Identities=43% Similarity=0.671 Sum_probs=200.6
Q ss_pred hhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccc
Q 043577 169 CATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIR 248 (402)
Q Consensus 169 ~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~ 248 (402)
|.+|++|||.||+++| .++.|+++||+. |++|++.||.++||||++|+..|+|.++|+|+||+|||||+++..+.+
T Consensus 3 ~~eY~~di~~~l~~~E---~~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~ 78 (260)
T 2cch_B 3 VPDYHEDIHTYLREME---VKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLR 78 (260)
T ss_dssp CCTTHHHHHHHHHHHH---HHTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCH
T ss_pred hHhHHHHHHHHHHHHH---hhcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCH
Confidence 6799999999999999 899999999997 999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch---------------------------HHHHH
Q 043577 249 QQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT---------------------------RFIRA 301 (402)
Q Consensus 249 ~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~---------------------------~FL~~ 301 (402)
.++||+|+|||||| +|+||+.+|.++||++++++. +|+..
T Consensus 79 ~~lqlv~~acl~iA-------------~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~ 145 (260)
T 2cch_B 79 GKLQLVGTAAMLLA-------------SKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 145 (260)
T ss_dssp HHHHHHHHHHHHHH-------------HHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHhHHHHHHHHHH-------------HHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999 999999999999999999865 67777
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHhccccc-ccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHH
Q 043577 302 AQRSNKAPSMQFECLANYILELSLLDYK-MLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALH 380 (402)
Q Consensus 302 ~~~~~~~~~~~l~~la~yllElsL~d~~-fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~ 380 (402)
+.........++..+|+|++|+++.|+. |++|+||.||+|||++|+.+++ .+.|...|.+++||+.++|++|++.|.
T Consensus 146 ~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~--~~~w~~~l~~~~g~~~~~i~~~~~~l~ 223 (260)
T 2cch_B 146 YFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT--GQSWPESLIRKTGYTLESLKPCLMDLH 223 (260)
T ss_dssp HHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHH--SCCSCHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhC--CCcchHHHHHHhCcCHHHHHHHHHHHH
Confidence 7665544444788999999999999999 9999999999999999999994 478999999999999999999999999
Q ss_pred HHHhhCCCCChhHHHHhhcCCC
Q 043577 381 RLFCDGGLSNLSAIREKYSQHK 402 (402)
Q Consensus 381 ~l~~~~~~~~~~aIr~KYs~~k 402 (402)
.++.+....++++|++||+++|
T Consensus 224 ~~~~~~~~~~~~~i~~Ky~~~~ 245 (260)
T 2cch_B 224 QTYLKAPQHAQQSIREKYKNSK 245 (260)
T ss_dssp HHHHHGGGSSCCHHHHHHTSGG
T ss_pred HHHHhcCCcchHHHHHHHCccc
Confidence 9999888888999999999875
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.1e-43 Score=341.29 Aligned_cols=215 Identities=36% Similarity=0.641 Sum_probs=193.4
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccc
Q 043577 167 QFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVI 246 (402)
Q Consensus 167 ~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v 246 (402)
|+|.+|++|||+||+++| .++.|+++|+++ | ++++.||.+++|||++|+..|++.++|+++|++|||||+++..+
T Consensus 1 ~~~~eY~~di~~~l~~~E---~~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v 75 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLE---AAQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSV 75 (269)
T ss_dssp ------CCTTTTTHHHHH---HTTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CChHHHHHHHHHHHHHHH---HhhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 578999999999999999 999999999986 6 99999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch---------------------------HHH
Q 043577 247 IRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT---------------------------RFI 299 (402)
Q Consensus 247 ~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~---------------------------~FL 299 (402)
.+.++||+|+|||||| +|+||+.+|.++||++++++. +|+
T Consensus 76 ~~~~lqlv~~acL~iA-------------~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl 142 (269)
T 2b9r_A 76 PKKMLQLVGVTAMFIA-------------SKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFL 142 (269)
T ss_dssp CGGGHHHHHHHHHHHH-------------HHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHH
T ss_pred cHHHhhHHHHHHHHHH-------------HhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHH
Confidence 9999999999999999 999999999999999999875 788
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHH
Q 043577 300 RAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKAL 379 (402)
Q Consensus 300 ~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L 379 (402)
+.+....+ ....+..+|+|++|+++.++.|++|+||.||+|||++|+.+++ ...|...|.+++||+.++|.+|++.|
T Consensus 143 ~~~~~~~~-~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~--~~~w~~~l~~~tg~~~~~l~~~~~~l 219 (269)
T 2b9r_A 143 RRASKIGE-VDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILD--NGEWTPTLQHYLSYTEESLLPVMQHL 219 (269)
T ss_dssp HHHHHSSC-CCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHT--CCCSCTTHHHHSCCCSSTTTTHHHHH
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 87766554 3456788999999999999999999999999999999999994 45899999999999999999999999
Q ss_pred HHHHhhCCC--CChhHHHHhhcCCC
Q 043577 380 HRLFCDGGL--SNLSAIREKYSQHK 402 (402)
Q Consensus 380 ~~l~~~~~~--~~~~aIr~KYs~~k 402 (402)
.+++..... .++++|++||+++|
T Consensus 220 ~~~~~~~~~~~~~~~ai~~Ky~~~~ 244 (269)
T 2b9r_A 220 AKNVVMVNQGLTKHMTVKNKYATSK 244 (269)
T ss_dssp HHHHHHTTTSCCSCCHHHHHTTSGG
T ss_pred HHHHHHhcCCCcchHHHHHHhcchh
Confidence 999876543 58999999999875
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.7e-41 Score=324.12 Aligned_cols=217 Identities=22% Similarity=0.274 Sum_probs=183.0
Q ss_pred CccCCCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 043577 158 DIDDNIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYI 237 (402)
Q Consensus 158 ~id~~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~l 237 (402)
+++.+..||+++.+ +||| +|+++| .++.|+++|+...|++|++.||.++||||++|+.+|++.++|+|+||+||
T Consensus 6 ~~~~~~~dp~~~~~--~~i~-~l~~~E---~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~ 79 (257)
T 1g3n_C 6 NPPSGLLDPTLCED--RIFY-NILEIE---PRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLL 79 (257)
T ss_dssp ----------CHHH--HHHH-HHHHHG---GGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCccCCCCCccccH--HHHH-HHHHHH---HHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45678899999998 9999 999999 89999999997669999999999999999999999999999999999999
Q ss_pred hhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch---------------------
Q 043577 238 DRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT--------------------- 296 (402)
Q Consensus 238 DRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~--------------------- 296 (402)
||||+++.+.+.++||+|+|||||| +|+||+.+|.+++|++++++.
T Consensus 80 DRfls~~~v~~~~lqLv~~acl~iA-------------~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l 146 (257)
T 1g3n_C 80 DRLLLIKQVSKEHFQKTGSACLLVA-------------SKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRT 146 (257)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHHH-------------HHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHH-------------HHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 9999999999999999999999999 999999999999999998875
Q ss_pred ------HHHHHHHhhCCCC---cHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCC----CCCChHHHHH
Q 043577 297 ------RFIRAAQRSNKAP---SMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPL----KKPWNSTLGH 363 (402)
Q Consensus 297 ------~FL~~~~~~~~~~---~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~----~~~W~~~L~~ 363 (402)
+|++.+....... ...+..+|+|++++++.|+.|++|+||.||+|||++|+..++.. ...|...|.+
T Consensus 147 ~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~ 226 (257)
T 1g3n_C 147 EAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLAS 226 (257)
T ss_dssp CCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHH
Confidence 6776654433222 12346789999999999999999999999999999999998521 2579999999
Q ss_pred hhCCChhhHHHHHHHHHHHHhhCCCCChhH
Q 043577 364 YTFYQPSDLCDCVKALHRLFCDGGLSNLSA 393 (402)
Q Consensus 364 ~tgy~~~~L~~C~~~L~~l~~~~~~~~~~a 393 (402)
++||+.++|++|++.|.+++.+.....+++
T Consensus 227 ~t~~~~~~l~~c~~~i~~l~~~~~~~~l~~ 256 (257)
T 1g3n_C 227 ILGCDVSVLQAAVEQILTSVSDFDLRILDS 256 (257)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHCCCCC---
T ss_pred HHCcCHHHHHHHHHHHHHHHHHCCHHhhcc
Confidence 999999999999999999999887766654
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.1e-40 Score=319.41 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=184.4
Q ss_pred ccCCCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHh
Q 043577 159 IDDNIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYID 238 (402)
Q Consensus 159 id~~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lD 238 (402)
.+.+..||+++.+ +|||+ |+++| .++.|+++|++..|+++++.||.++||||++|+.+|++.++|+|+||+|||
T Consensus 8 ~~~~~~dp~l~~~--~~i~~-l~~~E---~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~D 81 (254)
T 2f2c_A 8 LNRAKIDSTTMKD--PRVLN-NLKLR---ELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILD 81 (254)
T ss_dssp CCBCCCCHHHHTC--HHHHH-HHHHH---HTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCCCCCCcccccH--HHHHH-HHHHH---HhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 4567889999988 99999 99999 999999999986699999999999999999999999999999999999999
Q ss_pred hhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch----------------------
Q 043577 239 RYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT---------------------- 296 (402)
Q Consensus 239 RfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~---------------------- 296 (402)
|||+++.+.+.++||+|+|||||| +|+||+.+|.+++|++++++.
T Consensus 82 Rfls~~~v~~~~lqLv~~acl~iA-------------~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~ 148 (254)
T 2f2c_A 82 RYLCKKQGTKKTLQKIGAACVLIG-------------SKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTE 148 (254)
T ss_dssp HHTTTSCCCTTTHHHHHHHHHHHH-------------HHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHccCCcCHHHccHHHHHHHHHH-------------HHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 999999999999999999999999 999999999999999998875
Q ss_pred -----HHHHHHHhhCCCCc---HHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCC---hHHHHHhh
Q 043577 297 -----RFIRAAQRSNKAPS---MQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPW---NSTLGHYT 365 (402)
Q Consensus 297 -----~FL~~~~~~~~~~~---~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W---~~~L~~~t 365 (402)
+|++.+........ ..++.+|+|++++++.|+.|++|+||.||+||+++|+..+.+....| ...|.+++
T Consensus 149 ~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t 228 (254)
T 2f2c_A 149 AVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL 228 (254)
T ss_dssp CCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 56666544433222 12467899999999999999999999999999999999863222246 78999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCC
Q 043577 366 FYQPSDLCDCVKALHRLFCDGG 387 (402)
Q Consensus 366 gy~~~~L~~C~~~L~~l~~~~~ 387 (402)
||+.++|++|++.|.+++.+.+
T Consensus 229 g~~~~~l~~c~~~i~~~~~~~~ 250 (254)
T 2f2c_A 229 NFSTNTVRTVKDQVSEAFSLYD 250 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987664
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-39 Score=315.15 Aligned_cols=206 Identities=31% Similarity=0.419 Sum_probs=177.7
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhh
Q 043577 162 NIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYL 241 (402)
Q Consensus 162 ~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfL 241 (402)
...||.++ |.+|||++|+++| .++.|+++|++..|++|++.||.++||||++|+..|+|.++|+|+||+||||||
T Consensus 29 a~~dp~l~--~~~~i~~~l~~~E---~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfl 103 (306)
T 3g33_B 29 AGPDPRLL--GDQRVLQSLLRLE---ERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYL 103 (306)
T ss_dssp ----------CHHHHHHHHHHHG---GGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred cCCCCccc--chHHHHHHHHHHH---HHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHH
Confidence 46788876 8899999999999 999999999997799999999999999999999999999999999999999999
Q ss_pred ccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch-------------------------
Q 043577 242 SGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT------------------------- 296 (402)
Q Consensus 242 s~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~------------------------- 296 (402)
+++.+.+.++||+|+|||||| +|+||+.+|.+++|++++++.
T Consensus 104 s~~~v~~~~lqLv~~tcL~lA-------------sK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~t 170 (306)
T 3g33_B 104 SCVPTRKAQLQLLGAVCMLLA-------------SKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVI 170 (306)
T ss_dssp HHCCCCGGGHHHHHHHHHHHH-------------HHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred hcCCCcHHHHHHHHHHHHHHH-------------HHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCC
Confidence 999999999999999999999 999999999999999999875
Q ss_pred --HHHHHHHhhCCCC---cHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCC----hHHHHHhhCC
Q 043577 297 --RFIRAAQRSNKAP---SMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPW----NSTLGHYTFY 367 (402)
Q Consensus 297 --~FL~~~~~~~~~~---~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W----~~~L~~~tgy 367 (402)
+|++.+....... ...+...++|++++++.++.|+.|+||+||+|||++|+..++ ....| ...|.+++||
T Consensus 171 p~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~-~~~~w~~~w~~~L~~~tg~ 249 (306)
T 3g33_B 171 AHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG-ACSMSGDELTELLAGITGT 249 (306)
T ss_dssp GGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc-CCCCchhhHHHHHHHHHCC
Confidence 6777665433221 123567899999999999999999999999999999999995 33444 6788999999
Q ss_pred ChhhHHHHHHHHHHHHhhC
Q 043577 368 QPSDLCDCVKALHRLFCDG 386 (402)
Q Consensus 368 ~~~~L~~C~~~L~~l~~~~ 386 (402)
+.++|++|++.|.+++.+.
T Consensus 250 ~~~~l~~c~~~I~~l~~~~ 268 (306)
T 3g33_B 250 EVDCLRACQEQIEAALRES 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.5e-38 Score=305.24 Aligned_cols=204 Identities=18% Similarity=0.253 Sum_probs=176.0
Q ss_pred cCccCCCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 043577 157 VDIDDNIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNY 236 (402)
Q Consensus 157 ~~id~~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~ 236 (402)
..++.+..||+++.+ +||++|+++| .++.| + ..|+++++.||.++||||++|+.+|+|.++|+|+||+|
T Consensus 8 ~~~~~~~~dp~l~~d---~i~~~l~~~E---~~~~p----~-~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~ 76 (252)
T 1f5q_B 8 GFLDSSLLNEEDCRQ---MIYRSEREHD---ARMVG----V-NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVAL 76 (252)
T ss_dssp SSCSCTTCCHHHHHH---HHHHHHHHHH---HHHSS----S-SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred CCCCcCcCCHHHhHH---HHHHHHHHHH---HHhCc----C-ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 356778889999855 9999999999 77877 2 24788999999999999999999999999999999999
Q ss_pred HhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch--------------------
Q 043577 237 IDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT-------------------- 296 (402)
Q Consensus 237 lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~-------------------- 296 (402)
|||||+++.+.++++||+|+|||||| +|+||+.||.+++|++++++.
T Consensus 77 lDRfLs~~~v~~~~lqLvg~tcl~iA-------------sK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~ 143 (252)
T 1f5q_B 77 LDELFLSTRIDRENYQSTAAVALHIA-------------GKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWV 143 (252)
T ss_dssp HHHHHHHSCCCGGGHHHHHHHHHHHH-------------HHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCcCHHHHHHHHHHHHHHH-------------HHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999 999999999999999999887
Q ss_pred -------HHHHHHHhhCCCCc---HHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCC----hHHHH
Q 043577 297 -------RFIRAAQRSNKAPS---MQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPW----NSTLG 362 (402)
Q Consensus 297 -------~FL~~~~~~~~~~~---~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W----~~~L~ 362 (402)
+|++.+........ ..+..+++|+++++++|+.|+.|+||+||+||+.++. + ....| ...|.
T Consensus 144 l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~-~~~~~~~~~~~~L~ 219 (252)
T 1f5q_B 144 ADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM---N-QKYDYYENRIDGVC 219 (252)
T ss_dssp CCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH---T-TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh---c-cCCCchhhHHHHHH
Confidence 67777655433222 2456789999999999999999999999999965543 2 33444 67789
Q ss_pred HhhCCChhhHHHHHHHHHHHHhhCCC
Q 043577 363 HYTFYQPSDLCDCVKALHRLFCDGGL 388 (402)
Q Consensus 363 ~~tgy~~~~L~~C~~~L~~l~~~~~~ 388 (402)
+++||+.++|.+|++.|.+++.....
T Consensus 220 ~~t~~~~~~l~~C~~~i~~~l~~~~~ 245 (252)
T 1f5q_B 220 KSLYITKEELHQCCDLVDIAIVSFDE 245 (252)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999876543
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-37 Score=302.27 Aligned_cols=212 Identities=28% Similarity=0.469 Sum_probs=181.9
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhh
Q 043577 162 NIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYL 241 (402)
Q Consensus 162 ~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfL 241 (402)
...||+++.+|.+|||++|+++| .++.|+++|++. |++|++.||.+++|||++|+.+|++.++|+|+||+|||||+
T Consensus 7 ~~~~p~l~~~y~~~i~~~l~~~E---~~~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl 82 (283)
T 1w98_B 7 GSPLPVLSWANREEVWKIMLNKE---KTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYM 82 (283)
T ss_dssp -CCSCCCSSSCHHHHHHHHHHHT---TTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhcCHHHHHHHHHHHH---HHhCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 46789999999999999999999 899999999996 99999999999999999999999999999999999999999
Q ss_pred cc-ccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch------------------------
Q 043577 242 SG-NVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT------------------------ 296 (402)
Q Consensus 242 s~-~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~------------------------ 296 (402)
++ ..+.+.++||+|+|||||| +|+||+.+|.+++|++++++.
T Consensus 83 s~~~~v~~~~lqlv~~acL~iA-------------~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~ 149 (283)
T 1w98_B 83 ATQENVVKTLLQLIGISSLFIA-------------AKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPL 149 (283)
T ss_dssp HHCCCCCGGGHHHHHHHHHHHH-------------HHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HhCCCCCHHHHHHHHHHHHHHH-------------HHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCC
Confidence 98 6899999999999999999 999999999999999999865
Q ss_pred ---HHHHHHHhhCCC--------C--cHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHH
Q 043577 297 ---RFIRAAQRSNKA--------P--SMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGH 363 (402)
Q Consensus 297 ---~FL~~~~~~~~~--------~--~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~ 363 (402)
+|++.+...... . .......+.+++|+++.|+.|++|+||.||+|||++|. |...+.+
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~---------~~~~l~~ 220 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS---------SSELMQK 220 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS---------CHHHHHH
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH---------ChHHHHH
Confidence 677665442111 0 11233457789999999999999999999999999973 6788999
Q ss_pred hhCCChhhHHHHHHHHHHHHhh---CCCCChhHHHHhhcC
Q 043577 364 YTFYQPSDLCDCVKALHRLFCD---GGLSNLSAIREKYSQ 400 (402)
Q Consensus 364 ~tgy~~~~L~~C~~~L~~l~~~---~~~~~~~aIr~KYs~ 400 (402)
++||+.++|++|++.|..++.. ...+++.. ++||+.
T Consensus 221 ~tg~~~~~i~~c~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 259 (283)
T 1w98_B 221 VSGYQWCDIENCVKWMVPFAMVIRETGSSKLKH-FRGVAD 259 (283)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CTTSCG
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhcChHhhcc-hhccCH
Confidence 9999999999999999887663 23344443 456654
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.7e-37 Score=297.57 Aligned_cols=211 Identities=29% Similarity=0.424 Sum_probs=176.4
Q ss_pred ccCCCCCchhhhhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHh
Q 043577 159 IDDNIKDPQFCATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYID 238 (402)
Q Consensus 159 id~~~~dp~~~~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lD 238 (402)
++.+..||+++ .+|||++|++.| .++.|+++|+...|++|++.||.+++|||++|+.+|++.++|+|+||+|||
T Consensus 13 ~~~~~~dp~~~---~~~i~~~l~~~E---~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lD 86 (271)
T 2w96_A 13 IRRAYPDANLL---NDRVLRAMLKAE---ETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLD 86 (271)
T ss_dssp C--------------CHHHHHHHHHH---HHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred cccCCCCCccc---HHHHHHHHHHHH---HHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHH
Confidence 45577888887 679999999999 999999999987799999999999999999999999999999999999999
Q ss_pred hhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccchhhhccch----------------------
Q 043577 239 RYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEELCYITDNT---------------------- 296 (402)
Q Consensus 239 RfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df~~itd~~---------------------- 296 (402)
||+++.++.+.++||+|+|||||| +|+||+.||.+++|++++++.
T Consensus 87 Rfls~~~v~~~~lqlv~~acL~iA-------------sK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~ 153 (271)
T 2w96_A 87 RFLSLEPVKKSRLQLLGATCMFVA-------------SKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLA 153 (271)
T ss_dssp HHHTTSCCCTTTHHHHHHHHHHHH-------------HHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HhCCcCCcCHHHHHHHHHHHHHHH-------------HHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccC
Confidence 999999999999999999999999 999999999999999998865
Q ss_pred -----HHHHHHHhhCCCCcH---HHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhC---CCCCCC----hHHH
Q 043577 297 -----RFIRAAQRSNKAPSM---QFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILY---PLKKPW----NSTL 361 (402)
Q Consensus 297 -----~FL~~~~~~~~~~~~---~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~---~~~~~W----~~~L 361 (402)
+|+..+......... .+...+.+++++++.|+.|++|+||.||+|||++|+..++ +....| ...|
T Consensus 154 ~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l 233 (271)
T 2w96_A 154 AMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFL 233 (271)
T ss_dssp CCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHH
Confidence 677776554433322 1345788999999999999999999999999999998884 223344 4679
Q ss_pred HHhhCCChhhHHHHHHHHHHHHhhCCC
Q 043577 362 GHYTFYQPSDLCDCVKALHRLFCDGGL 388 (402)
Q Consensus 362 ~~~tgy~~~~L~~C~~~L~~l~~~~~~ 388 (402)
.+++||+.++|++|++.|.+++.....
T Consensus 234 ~~~~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 234 SRVIKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986543
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=1.7e-27 Score=227.52 Aligned_cols=182 Identities=17% Similarity=0.231 Sum_probs=148.3
Q ss_pred CcchhhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccc
Q 043577 193 SLDFMDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSD 272 (402)
Q Consensus 193 ~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~ 272 (402)
.|++.++++++++..||..+++||.+|+..|+|.++|+++|++|||||++++.+.+.++|++|+||||||
T Consensus 25 ~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA---------- 94 (258)
T 2i53_A 25 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLA---------- 94 (258)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHH----------
T ss_pred CchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHH----------
Confidence 3566666777888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCccccchhhhc-----cc---------h------------------------HHHHHHHhhCCCCc---H
Q 043577 273 YVVSKYEEICPPQVEELCYIT-----DN---------T------------------------RFIRAAQRSNKAPS---M 311 (402)
Q Consensus 273 ~~vsK~EEi~~p~l~df~~it-----d~---------~------------------------~FL~~~~~~~~~~~---~ 311 (402)
+|+||. ++.+++|+.++ ++ . .|+..+........ .
T Consensus 95 ---~K~eE~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~ 170 (258)
T 2i53_A 95 ---GKVEET-PKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQ 170 (258)
T ss_dssp ---HHHTTC-CCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHH
T ss_pred ---Hccccc-cccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHH
Confidence 888884 77777776422 10 1 56666655443332 2
Q ss_pred HHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHH-------HHHhhCCChhhHHHHHHHHHHHHh
Q 043577 312 QFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNST-------LGHYTFYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 312 ~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~-------L~~~tgy~~~~L~~C~~~L~~l~~ 384 (402)
.+..+|+++++.++.++.++.|+||.||+|||++|..+++...+.|... ...++|++.++|++|++.|.++|.
T Consensus 171 ~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 171 KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999985322334321 122469999999999999999997
Q ss_pred hCCC
Q 043577 385 DGGL 388 (402)
Q Consensus 385 ~~~~ 388 (402)
+...
T Consensus 251 ~~~~ 254 (258)
T 2i53_A 251 QGKQ 254 (258)
T ss_dssp SSCC
T ss_pred cccc
Confidence 7654
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.94 E-value=5.7e-27 Score=224.12 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=150.9
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccc
Q 043577 197 MDRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVS 276 (402)
Q Consensus 197 l~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vs 276 (402)
..+++++....||..+++||.+|+..|+|.++|+++|++|||||++++.+.+.++|++|+|||||| +
T Consensus 19 ~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA-------------~ 85 (257)
T 2ivx_A 19 RCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLA-------------A 85 (257)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHH-------------H
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHH-------------h
Confidence 344455566799999999999999999999999999999999999999999999999999999999 8
Q ss_pred cccccCCccccchhhhc--------------cch-----------------------------HHHHHHHhhCCCCcHHH
Q 043577 277 KYEEICPPQVEELCYIT--------------DNT-----------------------------RFIRAAQRSNKAPSMQF 313 (402)
Q Consensus 277 K~EEi~~p~l~df~~it--------------d~~-----------------------------~FL~~~~~~~~~~~~~l 313 (402)
|+||+ ++.+++|+.++ ++. .|+..+...... ...+
T Consensus 86 K~EE~-p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~-~~~~ 163 (257)
T 2ivx_A 86 KVEEQ-ARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA-SKDL 163 (257)
T ss_dssp HHTTC-CCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC-CHHH
T ss_pred ccccC-CcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCC-CcHH
Confidence 88888 77888886433 111 566655444332 3467
Q ss_pred HHHHHHHHHHhccc-ccccCCCHHHHHHHHHHHHHHHhCCC------CCCChHHHHHhhCCChhhHHHHHHHHHHHHhhC
Q 043577 314 ECLANYILELSLLD-YKMLCYSPSLIAASATFLANFILYPL------KKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG 386 (402)
Q Consensus 314 ~~la~yllElsL~d-~~fl~~~PS~IAaAai~lA~~~l~~~------~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~~ 386 (402)
..+|+++++.++.+ ..++.|+||.||+|||++|..+++.. ...|...+ .+||+.++|++|++.|.+++.+.
T Consensus 164 ~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 164 AQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp HHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhC
Confidence 88999999999864 44899999999999999999998521 24687755 45899999999999999999776
Q ss_pred CCCChhHHHHhhc
Q 043577 387 GLSNLSAIREKYS 399 (402)
Q Consensus 387 ~~~~~~aIr~KYs 399 (402)
+. .++.||.+|-
T Consensus 242 ~~-~l~~~~~~~~ 253 (257)
T 2ivx_A 242 PN-RLKKIRNWRA 253 (257)
T ss_dssp HH-HHHHHHHHHH
T ss_pred hH-HhhHHHHhhh
Confidence 65 5788888764
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.93 E-value=4.8e-26 Score=221.61 Aligned_cols=180 Identities=15% Similarity=0.182 Sum_probs=150.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCc
Q 043577 205 NPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPP 284 (402)
Q Consensus 205 t~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p 284 (402)
...+|..+++||.+|+..|+|.++|+++|++|||||++++.+.+.++|+||+|||||| +|+||+..|
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA-------------~K~EE~~~~ 105 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLA-------------SKVEEFGVV 105 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHH-------------HHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHH-------------Hhhhccccc
Confidence 3579999999999999999999999999999999999999999999999999999999 888888777
Q ss_pred cccchhhhcc------------c------h-----------------------HHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 043577 285 QVEELCYITD------------N------T-----------------------RFIRAAQRSNKAPSMQFECLANYILEL 323 (402)
Q Consensus 285 ~l~df~~itd------------~------~-----------------------~FL~~~~~~~~~~~~~l~~la~yllEl 323 (402)
.+++++.++. + . +||..+..... ....+..+|+++++.
T Consensus 106 ~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~-~~~~~~~~A~~~l~~ 184 (285)
T 3rgf_B 106 SNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMG-QEDMLLPLAWRIVND 184 (285)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 7777765431 1 0 45555443332 234678999999999
Q ss_pred hcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHhhC----CCCChhHHHHhhc
Q 043577 324 SLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDG----GLSNLSAIREKYS 399 (402)
Q Consensus 324 sL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~~----~~~~~~aIr~KYs 399 (402)
++.++.++.|+||.||+|||++|..+++.....|... .|++.++|.+|+..|.++|.+. .....+.+..||.
T Consensus 185 sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~~----~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~ 260 (285)
T 3rgf_B 185 TYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAE----LSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMP 260 (285)
T ss_dssp HTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHT----SCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSC
T ss_pred HHccChhhccCHHHHHHHHHHHHHHHcCCChhhHHHH----HCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCC
Confidence 9999999999999999999999999985444567654 4899999999999999999863 3456888999998
Q ss_pred CCC
Q 043577 400 QHK 402 (402)
Q Consensus 400 ~~k 402 (402)
..|
T Consensus 261 ~~~ 263 (285)
T 3rgf_B 261 KPK 263 (285)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.92 E-value=1.9e-25 Score=224.16 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=145.7
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhccccccccccccccc
Q 043577 198 DRVQKDINPGMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSK 277 (402)
Q Consensus 198 ~~~q~~it~~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK 277 (402)
..++.+....||..+++||++|+..|+|.++|+++|++|||||++++.+.+.++||||+|||||| +|
T Consensus 27 dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA-------------~K 93 (358)
T 2pk2_A 27 FGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLA-------------AK 93 (358)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHH-------------HH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH-------------Hh
Confidence 34445566789999999999999999999999999999999999999999999999999999999 77
Q ss_pred ccccCCccccchhhhc--------------cch-----------------------------HHHHHHHhhCCCCcHHHH
Q 043577 278 YEEICPPQVEELCYIT--------------DNT-----------------------------RFIRAAQRSNKAPSMQFE 314 (402)
Q Consensus 278 ~EEi~~p~l~df~~it--------------d~~-----------------------------~FL~~~~~~~~~~~~~l~ 314 (402)
+||+ ++.+++|+.++ ++. .||..+...... ...+.
T Consensus 94 ~EE~-p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~-~~~l~ 171 (358)
T 2pk2_A 94 VEEQ-PKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA-SKDLA 171 (358)
T ss_dssp HTTC-CCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC-CHHHH
T ss_pred hccC-CCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC-CHHHH
Confidence 7777 66777776432 111 566665544432 34678
Q ss_pred HHHHHHHHHhccccc-ccCCCHHHHHHHHHHHHHHHhCC------CCCCChHHHHHhhCCChhhHHHHHHHHHHHHhhCC
Q 043577 315 CLANYILELSLLDYK-MLCYSPSLIAASATFLANFILYP------LKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDGG 387 (402)
Q Consensus 315 ~la~yllElsL~d~~-fl~~~PS~IAaAai~lA~~~l~~------~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~~~ 387 (402)
.+|+++++.++.++. ++.|+||.||+|||++|..+++. ....|...+ ..+|+.++|++|+..|.++|...+
T Consensus 172 ~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~ 249 (358)
T 2pk2_A 172 QTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTP 249 (358)
T ss_dssp HHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCc
Confidence 899999999997554 89999999999999999999852 124687755 357999999999999999997766
Q ss_pred CCChhHHHH
Q 043577 388 LSNLSAIRE 396 (402)
Q Consensus 388 ~~~~~aIr~ 396 (402)
. .++.|+.
T Consensus 250 ~-~L~~i~~ 257 (358)
T 2pk2_A 250 N-RLKRIWN 257 (358)
T ss_dssp T-HHHHHHH
T ss_pred c-cccchhc
Confidence 5 4666654
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2e-24 Score=204.15 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccc-cccchhhHHHHHhhcccccccccccccccccccCCcccc
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIR-QQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVE 287 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~-~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~ 287 (402)
|..+++||.+++..|+|.++|+++|++|||||++++.+.+ .++|+||+|||||| +|+||. ++.++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA-------------~K~Ee~-~~~l~ 93 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLS-------------CKVEEC-PVHIR 93 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHH-------------HHHTTC-CCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHH-------------hccccC-cccHH
Confidence 9999999999999999999999999999999999999999 99999999999999 888884 67888
Q ss_pred chhhhccc------h---------------------------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCC
Q 043577 288 ELCYITDN------T---------------------------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYS 334 (402)
Q Consensus 288 df~~itd~------~---------------------------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~ 334 (402)
+|+.++++ . .|+..+....+. ...+..+|.++++.++.++.++.|+
T Consensus 94 d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~-~~~~~~~A~~~l~~s~~~~~~l~~~ 172 (235)
T 1zp2_A 94 TICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII-NQKQLEFAWSIVNDSYASSLCLMAH 172 (235)
T ss_dssp HHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTTTGGGTSC
T ss_pred HHHHHHHHHccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCchhccC
Confidence 88876642 1 566665544332 3567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHhhCC
Q 043577 335 PSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCDGG 387 (402)
Q Consensus 335 PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~~~ 387 (402)
||.||+|||++|..+++...+.|...+. |++.++|.+|++.|.++|....
T Consensus 173 Ps~IAaAai~lA~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 173 PHQLAYAALLISCCNDENTIPKLLDLIK---STDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp HHHHHHHHHHHHHTSCTTHHHHHHHHCC---HHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchhh---cCCHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999887321123544443 8999999999999999998654
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.90 E-value=2.8e-23 Score=205.61 Aligned_cols=180 Identities=15% Similarity=0.126 Sum_probs=147.4
Q ss_pred CChhhHHHHHHHHHHHHHhcC--cchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhccccccccccccccccccc
Q 043577 204 INPGMRAILIDWLVEVSEEYR--LVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEI 281 (402)
Q Consensus 204 it~~~R~~LVdWL~eV~~~~~--L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi 281 (402)
-...+|...++||.+||..|+ |.++|+++|++|||||++.+.+.+.++|+||+|||||| +|+||+
T Consensus 52 eE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA-------------~K~EE~ 118 (323)
T 1jkw_A 52 EEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLA-------------CKVDEF 118 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHH-------------HHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHH-------------HhhhcC
Confidence 335789999999999999999 99999999999999999999999999999999999999 888887
Q ss_pred CCccccchhhhcc-c--------h-----------------------HHHHHHHh-h----CC-CCcHHHHHHHHHHHHH
Q 043577 282 CPPQVEELCYITD-N--------T-----------------------RFIRAAQR-S----NK-APSMQFECLANYILEL 323 (402)
Q Consensus 282 ~~p~l~df~~itd-~--------~-----------------------~FL~~~~~-~----~~-~~~~~l~~la~yllEl 323 (402)
++.+++|++.+. + . +||..+.. + .. .....+..+|+++++.
T Consensus 119 -~~~l~d~v~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~ 197 (323)
T 1jkw_A 119 -NVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNR 197 (323)
T ss_dssp -CCCHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 567888876542 1 0 44543321 1 11 1224577899999999
Q ss_pred hcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHh--hCCChhhHHHHHHHHHHHHhhCCC---CChhHHHHh
Q 043577 324 SLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHY--TFYQPSDLCDCVKALHRLFCDGGL---SNLSAIREK 397 (402)
Q Consensus 324 sL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~--tgy~~~~L~~C~~~L~~l~~~~~~---~~~~aIr~K 397 (402)
++.++.++.|+||.||+|||++|...++...+.|...+.++ ++++.++|.+|+..|..++..... ..+.+|.+|
T Consensus 198 sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~K 276 (323)
T 1jkw_A 198 IALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQK 276 (323)
T ss_dssp HTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred HHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999964457899988765 789999999999999999987532 355666666
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.77 E-value=3.7e-18 Score=157.89 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=137.3
Q ss_pred hhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccc
Q 043577 207 GMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQV 286 (402)
Q Consensus 207 ~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l 286 (402)
.......+||.+++..++|+..|+.+|+.|++||+..+.+...+.+++|++||||| +|+||. |.++
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylA-------------cK~ee~-p~~l 68 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIA-------------CRQEGV-PRTF 68 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHH-------------HHHTTC-CCCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH-------------HHhcCC-CCCH
Confidence 34667889999999999999999999999999999999999999999999999999 888877 6777
Q ss_pred cchhhhccch-------------------------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHH
Q 043577 287 EELCYITDNT-------------------------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAAS 341 (402)
Q Consensus 287 ~df~~itd~~-------------------------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaA 341 (402)
+|++.+++-. .|+..+....+. ...+..+|+++++.++.+.-+++++|+.||+|
T Consensus 69 ~di~~~~~~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l-~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaA 147 (207)
T 1c9b_A 69 KEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCL-PKQVQMAATHIARKAVELDLVPGRSPISVAAA 147 (207)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCccCCCChHHHHHH
Confidence 7777665433 566655544433 34678899999999998888899999999999
Q ss_pred HHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHh
Q 043577 342 ATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 342 ai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~ 384 (402)
||++|.+++ +.+.|...+..++|++..+|+.|.+.|.+...
T Consensus 148 aiylA~~~~--~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 148 AIYMASQAS--AEKRTQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHTS--SSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHH--CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 999999987 46678889999999999999999999987544
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.59 E-value=2e-14 Score=132.04 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccc
Q 043577 207 GMRAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQV 286 (402)
Q Consensus 207 ~~R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l 286 (402)
.......+||.+++..++|++.+...|..|++||+....+.....+.+|++||+|| +|.++. |.++
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylA-------------cr~~~~-p~~l 72 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAA-------------CRLLKV-PRTL 72 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHH-------------HHHHTC-CCCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHH-------------HHHcCC-CCCH
Confidence 34567889999999999999999999999999999998888889999999999999 666653 5555
Q ss_pred cchhhhccch---------------------------HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHH
Q 043577 287 EELCYITDNT---------------------------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIA 339 (402)
Q Consensus 287 ~df~~itd~~---------------------------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IA 339 (402)
+|++.+++-. .|+..+....+. ...+...|+++++.+..+.-+.+++|+.||
T Consensus 73 ~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l-~~~v~~~A~~i~~~~~~~~~~~gr~P~~iA 151 (200)
T 1ais_B 73 DEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL-SEKVRRRAIEILDEAYKRGLTSGKSPAGLV 151 (200)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTC-CHHHHHHHHHHHHHHHHTTCCTTSCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCcccCCCHHHHH
Confidence 5554443322 333333222222 235778999999999988889999999999
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHh
Q 043577 340 ASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 340 aAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~ 384 (402)
+||||+|.++. +.+.|...+..++|++..+++.|.+.|.+.+.
T Consensus 152 aAaly~A~~~~--~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 152 AAALYIASLLE--GEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 99999999997 56779999999999999999999999998764
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.8e-11 Score=120.52 Aligned_cols=158 Identities=12% Similarity=0.047 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccc
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEE 288 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~d 288 (402)
.......|.+++..++|+..+.-.|..|+.|++..+.+.....+.++++||||| +|.+++ |.++.|
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiA-------------cR~e~~-prtl~e 191 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG-------------CRRAEV-ARTFKE 191 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTT-------------SBTTBS-SCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH-------------HHHcCC-CccHHH
Confidence 346678889999999999999999999999999998898889999999999999 776665 566666
Q ss_pred hhhhccch-------------------------------------HHHHHHHhhCCCCcHHHHHHHHHHHHHhccccccc
Q 043577 289 LCYITDNT-------------------------------------RFIRAAQRSNKAPSMQFECLANYILELSLLDYKML 331 (402)
Q Consensus 289 f~~itd~~-------------------------------------~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl 331 (402)
++.+++-. .|+.++....+ ...++..+|++|++.+.-+.-+.
T Consensus 192 i~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~-l~~~v~~~A~~i~~~~~~~~l~~ 270 (345)
T 3k7a_M 192 IQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG-LPMQVTTSAEYTAKKCKEIKEIA 270 (345)
T ss_dssp HHHSSSCCSHHHHHHHHHHHHHHTCC------------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhchhc
Confidence 65554422 11111111111 11345678899998888877788
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHH
Q 043577 332 CYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLF 383 (402)
Q Consensus 332 ~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~ 383 (402)
+++|+.||+||||+|.+++ +...|...+...+|++...|+.+++.|....
T Consensus 271 Gr~P~~IAaAaIylAa~~~--~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 271 GKSPITIAVVSIYLNILLF--QIPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987 4567889999999999999999999988754
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.19 E-value=2e-06 Score=85.60 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccccccccccchhhHHHHHhhcccccccccccccccccccCCccccch
Q 043577 210 AILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVEEL 289 (402)
Q Consensus 210 ~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~df 289 (402)
......|.+++..++|+..+.-.|..|+.+++....+.......++++|+|||+|.++.. -++.|+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~p--------------rtl~eI 192 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVA--------------RTFKEI 192 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCB--------------CCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCC--------------ccHHHH
Confidence 345567789999999999999999999999999888888889999999999995554433 333333
Q ss_pred hhhccc-------------------------------------hHHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccC
Q 043577 290 CYITDN-------------------------------------TRFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLC 332 (402)
Q Consensus 290 ~~itd~-------------------------------------~~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~ 332 (402)
+.++.- ..|+.++....+. ..++...|..|++.+.-+--..+
T Consensus 193 ~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l-~~~v~~~A~~i~~~~~~~~i~~G 271 (345)
T 4bbr_M 193 QSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL-PMQVTTSAEYTAKKCKEIKEIAG 271 (345)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcccccC
Confidence 222211 1233322221111 22456677777766665544568
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHH
Q 043577 333 YSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLF 383 (402)
Q Consensus 333 ~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~ 383 (402)
-+|+.||+||||+|.++.+ ...-...+...+|++...++..++.|.+..
T Consensus 272 R~P~~IAAAaIylAa~l~g--~~~t~~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 272 KSPITIAVVSIYLNILLFQ--IPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------------------
T ss_pred CChHHHHHHHHHHHHHHhC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998873 333456677888888888887777776543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=93.46 E-value=0.11 Score=50.28 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHhhhhccc---cccccccchhhHHHHHhhcccccccccccccccccccCCcccc
Q 043577 211 ILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSGN---VIIRQQLQLLGVACMMISATMDNKWKSDYVVSKYEEICPPQVE 287 (402)
Q Consensus 211 ~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~~---~v~~~~LQLvgitCL~IAaK~ee~~~~~~~vsK~EEi~~p~l~ 287 (402)
-+-+|+.++...-+++.+++-+|+.|+||+..+. .+......-+-++||.+| +|+-+-....-+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlA-------------sK~ldD~~ysN~ 142 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVA-------------TKGLCDSFSTNA 142 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHH-------------HHHHCSSCCCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHH-------------HHhccccccChh
Confidence 3667899999999999999999999999998752 345566777889999999 777665444433
Q ss_pred chh
Q 043577 288 ELC 290 (402)
Q Consensus 288 df~ 290 (402)
.+.
T Consensus 143 ~wA 145 (293)
T 2pmi_B 143 HYA 145 (293)
T ss_dssp HHH
T ss_pred Hhh
Confidence 333
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=92.73 E-value=0.8 Score=40.88 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=63.3
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCV 376 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~ 376 (402)
.+++.+....+.+ ..+...|..+...++....+-+.++..+|+||+|+|.+.. +.+.-...+...++++..++..+.
T Consensus 14 ~~I~~~~~~L~L~-~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~--~~p~~l~di~~~~~v~~~~i~~~~ 90 (200)
T 1ais_B 14 SELDRITAQLKLP-RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLL--KVPRTLDEIADIARVDKKEIGRSY 90 (200)
T ss_dssp HHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHH--TCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHH
Confidence 4444443333333 3566777777777766655778999999999999999998 344455677888999999999999
Q ss_pred HHHHHHHh
Q 043577 377 KALHRLFC 384 (402)
Q Consensus 377 ~~L~~l~~ 384 (402)
+.|.+.+.
T Consensus 91 ~~l~~~L~ 98 (200)
T 1ais_B 91 RFIARNLN 98 (200)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99988664
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=90.70 E-value=1.6 Score=39.12 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=62.7
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCV 376 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~ 376 (402)
.+++.+....+.+ ..+...|..+....+....+.++.+-.+|+||+|+|.+.- ..+.--..+...++++..++..+.
T Consensus 10 ~~I~~~~~~L~L~-~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~e--e~p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 10 KEITTMADRINLP-RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE--GVPRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHT--TCCCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHCCCHHHHHHHH
Confidence 4455544444444 3455667667666766667888999999999999999997 334555677888899999999998
Q ss_pred HHHHHHHh
Q 043577 377 KALHRLFC 384 (402)
Q Consensus 377 ~~L~~l~~ 384 (402)
..|.+.+.
T Consensus 87 ~~ll~~L~ 94 (207)
T 1c9b_A 87 KLILKALE 94 (207)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHC
Confidence 88887654
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=80.49 E-value=13 Score=33.87 Aligned_cols=85 Identities=9% Similarity=0.032 Sum_probs=58.8
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccC-CCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhh--------CC
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLC-YSPSLIAASATFLANFILYPLKKPWNSTLGHYT--------FY 367 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~-~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~t--------gy 367 (402)
+|+..+....+.+ ..+..+|..+.+-.+....+.+ +.+-.+|+|||++|.+.-. . +.--..+...+ .+
T Consensus 33 ~~i~~v~~~l~L~-~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~-~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 33 KVVQTFGDRLRLR-QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-C-PVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-C-CCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-C-cccHHHHHHHHHHHccchhhc
Confidence 5565555444444 3456677777777777777888 9999999999999999973 2 22233444444 57
Q ss_pred ChhhHHHHHHHHHHHHh
Q 043577 368 QPSDLCDCVKALHRLFC 384 (402)
Q Consensus 368 ~~~~L~~C~~~L~~l~~ 384 (402)
+.++|..+=..|.+.+.
T Consensus 110 ~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 110 SRSNISEIEFEIISVLD 126 (235)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 88898888777777654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=71.41 E-value=14 Score=36.03 Aligned_cols=71 Identities=7% Similarity=-0.031 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHh
Q 043577 312 QFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 312 ~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~ 384 (402)
.+...|..+...++-.-.+-+.+...+||||||+|.+.. ..+.-...+...++++..+|..+.+.|.+.+.
T Consensus 145 ~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~--~~prtl~eI~~~~~v~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 145 IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA--EVARTFKEIQSLIHVKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHT--CCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhc--CCCccHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 455667777766655444557889999999999999987 33444456778889999999999999988654
No 24
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=68.80 E-value=33 Score=31.87 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=61.6
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhC--CChhhHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTF--YQPSDLCD 374 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~~L~~ 374 (402)
+|+......-+.. .....+|..+++--+....+-....-.+|+||+++|.+.-. ..++--..+..+++ |+.+++..
T Consensus 43 ~wl~~v~~~~~l~-~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE-~~~p~~~d~~~~~~~~~~~~eI~~ 120 (269)
T 2b9r_A 43 DWLVQVQMKFRLL-QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEE-MYPPEIGDFAFVTDNTYTKHQIRQ 120 (269)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhccc-ccCccHHHHHHHhcCCCCHHHHHH
Confidence 5665555444333 34566777777777766677788899999999999999873 33444556777774 89999998
Q ss_pred HHHHHHHHHh
Q 043577 375 CVKALHRLFC 384 (402)
Q Consensus 375 C~~~L~~l~~ 384 (402)
+=..|.+.+.
T Consensus 121 mE~~IL~~L~ 130 (269)
T 2b9r_A 121 MEMKILRALN 130 (269)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8888877665
No 25
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=64.41 E-value=48 Score=30.62 Aligned_cols=86 Identities=17% Similarity=0.045 Sum_probs=57.0
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhC--CChhhHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTF--YQPSDLCD 374 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~~L~~ 374 (402)
+|+.......+.. .....+|-.+++--+.-..+.....-.+|+||+++|.+.-. ..++--..+..+++ |+.+++..
T Consensus 62 ~wl~~v~~~~~l~-~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE-~~p~~~~~~~~~~~~~~~~~eI~~ 139 (271)
T 2w96_A 62 TWMLEVCEEQKCE-EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE-TIPLTAEKLCIYTDNSIRPEELLQ 139 (271)
T ss_dssp HHHHHHHHHTTCC-TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHHCCc-hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHhcCCCCHHHHHH
Confidence 4554443333322 23345666666666655667788999999999999999973 32333455666664 89999988
Q ss_pred HHHHHHHHHh
Q 043577 375 CVKALHRLFC 384 (402)
Q Consensus 375 C~~~L~~l~~ 384 (402)
+=..|.+.+.
T Consensus 140 mE~~IL~~L~ 149 (271)
T 2w96_A 140 MELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 8777777654
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=61.91 E-value=6.3 Score=38.44 Aligned_cols=71 Identities=7% Similarity=-0.031 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHh
Q 043577 312 QFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 312 ~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~ 384 (402)
.+...|..|...++....+-+.+...+|+||||+|.+.. ..+.--..+..+++++..+|..+...|.+.+.
T Consensus 145 ~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e--~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 145 IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA--EVARTFKEIQSLIHVKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTT--BSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHc--CCCccHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 345556666666655555667899999999999998875 33444456778889999999999999998775
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=60.36 E-value=61 Score=30.33 Aligned_cols=86 Identities=21% Similarity=0.197 Sum_probs=54.8
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhh-----------
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYT----------- 365 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~t----------- 365 (402)
+|+.......+.+. ....+|..+.+--+....+..+.+-.+|+|||++|.+.-. ...+-...+...+
T Consensus 48 ~~I~~v~~~l~L~~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE-~~~~~~~di~~~~~~~~k~~~~~~ 125 (285)
T 3rgf_B 48 NVIQALGEHLKLRQ-QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE-FGVVSNTRLIAAATSVLKTRFSYA 125 (285)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhc-cccccHHHHHHHHHHHHccccccc
Confidence 55555544444443 4556676777677777778899999999999999999862 2222122332211
Q ss_pred -----CCChhhHHHHHHHHHHHHh
Q 043577 366 -----FYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 366 -----gy~~~~L~~C~~~L~~l~~ 384 (402)
.+..++|..+=..|.+.+.
T Consensus 126 ~~~~~~~~~~~Il~~E~~iL~~L~ 149 (285)
T 3rgf_B 126 FPKEFPYRMNHILECEFYLLELMD 149 (285)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHTT
T ss_pred CchhhHHHHHHHHHHHHHHHHHcC
Confidence 2566788777666666554
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=60.32 E-value=36 Score=31.29 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=56.9
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhh--CCChhhHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYT--FYQPSDLCD 374 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~t--gy~~~~L~~ 374 (402)
+|+......-+.. .....+|-.+++--+.-..+.....-.+|+||+++|.+.-. ..++--..+..++ .|+.+++..
T Consensus 44 dwl~~v~~~~~l~-~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee-~~~~~~~d~~~i~~~~~~~~~i~~ 121 (260)
T 2cch_B 44 DWLVEVGEEYKLQ-NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEE-IYPPEVAEFVYITDDTYTKKQVLR 121 (260)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcc-cCCCCHHHHHHHHcCCcCHHHHHH
Confidence 5555544433322 33445566666555555556667788999999999999973 3344455666677 489999988
Q ss_pred HHHHHHHHHh
Q 043577 375 CVKALHRLFC 384 (402)
Q Consensus 375 C~~~L~~l~~ 384 (402)
+=..|.+.+.
T Consensus 122 mE~~iL~~L~ 131 (260)
T 2cch_B 122 MEHLVLKVLT 131 (260)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8877777654
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=59.04 E-value=49 Score=30.25 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=58.2
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhC--CChhhHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTF--YQPSDLCD 374 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~~L~~ 374 (402)
+|+......-+.. .....+|-.+++-.+.-........-.+|+||+++|.+.-. ..++--..+..+++ |+.+++..
T Consensus 57 dwl~~v~~~~~l~-~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE-~~~p~~~d~~~~~~~~~~~~~i~~ 134 (254)
T 2f2c_A 57 TWMHLLCESFELD-KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRT-VKPMTVSKLTYLSCDCFTNLELIN 134 (254)
T ss_dssp HHHHHHHHHTTCC-TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHC-SSCCCHHHHSTTC---CCHHHHHH
T ss_pred HHHHHHHHHHCCC-chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcc-cCCCCHHHHHHHhCCCCCHHHHHH
Confidence 5555444333322 23456777777777766677788999999999999999973 33333445666653 88899988
Q ss_pred HHHHHHHHHh
Q 043577 375 CVKALHRLFC 384 (402)
Q Consensus 375 C~~~L~~l~~ 384 (402)
+=..|.+.+.
T Consensus 135 mE~~IL~~L~ 144 (254)
T 2f2c_A 135 QEKDILEALK 144 (254)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 7777776554
No 30
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=58.48 E-value=47 Score=30.42 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=57.8
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhC--CChhhHHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTF--YQPSDLCD 374 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~~L~~ 374 (402)
+|+......-+. ......+|-.+++-.+....+.....-.+|++|+++|.+.-. ..++--..+..+++ |+.+++..
T Consensus 56 dwl~ev~~~~~l-~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE-~~~p~~~d~~~~~~~~~~~~~i~~ 133 (257)
T 1g3n_C 56 TWMFSVCQEYNL-EPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRS-LTPISTSSLCYAAADSFSRQELID 133 (257)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHhCC-CccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcc-ccCCCHHHHHHHHCCCCCHHHHHH
Confidence 555554443332 234556777777766666666677788999999999999873 33344456677764 89999988
Q ss_pred HHHHHHHHHh
Q 043577 375 CVKALHRLFC 384 (402)
Q Consensus 375 C~~~L~~l~~ 384 (402)
+=..|.+.+.
T Consensus 134 mE~~iL~~L~ 143 (257)
T 1g3n_C 134 QEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 7777776554
No 31
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=54.06 E-value=18 Score=33.21 Aligned_cols=52 Identities=12% Similarity=0.314 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCcch----HHHHHHHHHHhhhhccccccccccchhhHHHHHhhccc
Q 043577 214 DWLVEVSEEYRLVP----ETLFLAVNYIDRYLSGNVIIRQQLQLLGVACMMISATM 265 (402)
Q Consensus 214 dWL~eV~~~~~L~~----eTl~LAV~~lDRfLs~~~v~~~~LQLvgitCL~IAaK~ 265 (402)
++|......++.+. +...+|..+++.-+.....-.-.-..||++|+++|+++
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~ 208 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRL 208 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHH
Confidence 56677777888876 57888999998887766666667889999999999443
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=53.79 E-value=62 Score=30.69 Aligned_cols=71 Identities=20% Similarity=-0.011 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhC--CChhhHHHHHHHHHHHHh
Q 043577 313 FECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTF--YQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 313 l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~~L~~C~~~L~~l~~ 384 (402)
...+|-.+++--+.-..+.....-++|++|+++|.++-. ..++--..+..+++ |+.++|..+=..|.+.+.
T Consensus 91 t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE-~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~ 163 (306)
T 3g33_B 91 VFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRE-TTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHC-SSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcC
Confidence 345565666555555567788899999999999999863 33333345666665 888998887777766554
No 33
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=51.86 E-value=84 Score=29.30 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhccc-ccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhh--CCChhhHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLD-YKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYT--FYQPSDLC 373 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d-~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~t--gy~~~~L~ 373 (402)
+|+......-+. ......+|-.+++--+.- ........-.+|+||+++|.+.-. ..++--..+..++ .|+.+++.
T Consensus 55 ~wl~~v~~~~~l-~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE-~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYKL-HRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEE-IYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTTC-BHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHC-SSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhCC-CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcc-cCCCcHHHHHHHHcCCCCHHHHH
Confidence 455444433332 233445555555544443 245677889999999999999973 3344445666666 48899998
Q ss_pred HHHHHHHHHHh
Q 043577 374 DCVKALHRLFC 384 (402)
Q Consensus 374 ~C~~~L~~l~~ 384 (402)
.+=..|.+.+.
T Consensus 133 ~mE~~IL~~L~ 143 (283)
T 1w98_B 133 TMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 88777776554
No 34
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=47.80 E-value=1.3e+02 Score=28.66 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=38.9
Q ss_pred HHHHHHHhhCC--CCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHh
Q 043577 297 RFIRAAQRSNK--APSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFIL 350 (402)
Q Consensus 297 ~FL~~~~~~~~--~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l 350 (402)
.|+..+....+ .+ ..+..+|..+.+--+....+..+.|-.||+|||++|.++-
T Consensus 62 ~~I~ev~~~l~~~Lp-~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~E 116 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMP-RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVD 116 (323)
T ss_dssp HHHHHHHHHCTTTCC-HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCC-HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhh
Confidence 44554444333 33 3455677777777777778889999999999999999987
No 35
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=43.29 E-value=1.6e+02 Score=28.05 Aligned_cols=85 Identities=11% Similarity=-0.059 Sum_probs=54.5
Q ss_pred HHHHHHHhhCCCCcHHHHHHH-HHHHHHhccccc--ccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHH
Q 043577 297 RFIRAAQRSNKAPSMQFECLA-NYILELSLLDYK--MLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLC 373 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la-~yllElsL~d~~--fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~ 373 (402)
.|++++........ ...-++ .||--+...... .......-+-.+|+.+|.+.++ +...|+.....+.|++..+|.
T Consensus 79 ~Yl~RI~k~t~ls~-~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ld-D~~ysN~~wAkVgGisl~ELN 156 (293)
T 2pmi_B 79 NYFIRLTKFSSLEH-CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLC-DSFSTNAHYAKVGGVRCHELN 156 (293)
T ss_dssp HHHHHHHHTTTCCH-HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhcc-ccccChhHhhhccCcCHHHHH
Confidence 56666554443332 223333 344434433333 3456788888999999999995 667788999999999999986
Q ss_pred HHHHHHHHHH
Q 043577 374 DCVKALHRLF 383 (402)
Q Consensus 374 ~C~~~L~~l~ 383 (402)
..=..+..++
T Consensus 157 ~LE~eFL~lL 166 (293)
T 2pmi_B 157 ILENDFLKRV 166 (293)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHc
Confidence 6555554443
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=41.63 E-value=2.1e+02 Score=26.20 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHhhhhcc---ccccccccchhhHHHHHhh
Q 043577 211 ILIDWLVEVSEEYRLVPETLFLAVNYIDRYLSG---NVIIRQQLQLLGVACMMIS 262 (402)
Q Consensus 211 ~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfLs~---~~v~~~~LQLvgitCL~IA 262 (402)
.+.+-|..++.+-+++...|--||-+--.|.-. .+....+-|=||++||+||
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miA 68 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIA 68 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHH
Confidence 345556889999999999999999998888765 3566778899999999999
No 37
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=40.16 E-value=64 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=40.2
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHh
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFIL 350 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l 350 (402)
+|+.......+.+ .....+|..+.+--+....+..+.+-.+|+|||++|.+.-
T Consensus 36 ~~i~~v~~~l~l~-~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~E 88 (257)
T 2ivx_A 36 NLIQEMGQRLNVS-QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88 (257)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCc-HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccc
Confidence 5565555444433 3456677777777777778889999999999999999987
No 38
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=38.09 E-value=62 Score=31.55 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHh
Q 043577 297 RFIRAAQRSNKAPSMQFECLANYILELSLLDYKMLCYSPSLIAASATFLANFIL 350 (402)
Q Consensus 297 ~FL~~~~~~~~~~~~~l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l 350 (402)
+|+..+....+.+ .....+|..+++--+....+..+.+-.||+|||++|.++-
T Consensus 43 ~wI~ev~~~l~L~-~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~E 95 (358)
T 2pk2_A 43 NLLQDMGQRLNVS-QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVE 95 (358)
T ss_dssp HHHHHHHTTTTCC-HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhc
Confidence 5555554444433 3456677777777777778889999999999999999987
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=29.29 E-value=1.3e+02 Score=23.94 Aligned_cols=52 Identities=17% Similarity=0.001 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCChhhHHHHHHHHHHHHhh
Q 043577 332 CYSPSLIAASATFLANFILYPLKKPWNSTLGHYTFYQPSDLCDCVKALHRLFCD 385 (402)
Q Consensus 332 ~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~~L~~C~~~L~~l~~~ 385 (402)
.+.--+-++||+|.+.+.+ ....=...|...+|..+.++......+..+...
T Consensus 42 D~s~P~f~aaA~~~acr~~--K~kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKIL--KLKVDKNKMVATSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHT--TCCCCHHHHHHTTCBCHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHH--ccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 3444455677888888887 344455678899999999999999998887643
No 40
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=27.24 E-value=3.3e+02 Score=24.86 Aligned_cols=71 Identities=14% Similarity=-0.057 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHhh--CCChhhHHHHHHHHHHHHh
Q 043577 313 FECLANYILELSLLDYKMLCYSPSLIAASATFLANFILYPLKKPWNSTLGHYT--FYQPSDLCDCVKALHRLFC 384 (402)
Q Consensus 313 l~~la~yllElsL~d~~fl~~~PS~IAaAai~lA~~~l~~~~~~W~~~L~~~t--gy~~~~L~~C~~~L~~l~~ 384 (402)
...+|-.+++--+..........-++|++|+++|.+.-. ..++--..+..++ .|+.+++...=..|...+.
T Consensus 69 T~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE-~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~ 141 (252)
T 1f5q_B 69 VFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRA-YMPIKATQLAYLCGGATTADKLLTLEVKSLDTLS 141 (252)
T ss_dssp HHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCC
Confidence 345555555554444456667789999999999999873 3333345566666 4888888776666665544
No 41
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=24.19 E-value=1.4e+02 Score=24.53 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHhhhhhhcCCCCcchhhhcCCCCChhhHHHHHHHHHHHHHhc
Q 043577 170 ATIACDIYKNLRASEDFQAKKRPSLDFMDRVQKDINPGMRAILIDWLVEVSEEY 223 (402)
Q Consensus 170 ~eY~~eI~~~L~~~E~~~~~~~p~~~yl~~~q~~it~~~R~~LVdWL~eV~~~~ 223 (402)
..+.+||...|+... --+..+...|......-++..=-.+++||++++...
T Consensus 69 ~~~eeev~~~lK~L~---YP~~isKS~L~a~g~pHsWp~~L~~L~WLvel~~~~ 119 (120)
T 2igp_A 69 TKFEEEVPRIFKDLG---YPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH 119 (120)
T ss_dssp TTHHHHHHHHHHHTT---CCSCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHcC---CCceeCHHHhcCCCCCccHHHHHHHHHHHHHHHHhh
Confidence 478899999999999 666666677765444456667778899999998653
No 42
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=21.64 E-value=86 Score=26.12 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=21.7
Q ss_pred cCcchHHHH---HHHHHHhhhhccccccccccchhhHHHHHhh
Q 043577 223 YRLVPETLF---LAVNYIDRYLSGNVIIRQQLQLLGVACMMIS 262 (402)
Q Consensus 223 ~~L~~eTl~---LAV~~lDRfLs~~~v~~~~LQLvgitCL~IA 262 (402)
++++.++++ +|.+|||- -.|+-++|-++|
T Consensus 87 ~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA 118 (141)
T 1fs1_B 87 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVA 118 (141)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHH
Confidence 467777775 57777763 357889999999
No 43
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=21.18 E-value=80 Score=25.72 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhh
Q 043577 209 RAILIDWLVEVSEEYRLVPETLFLAVNYIDRYL 241 (402)
Q Consensus 209 R~~LVdWL~eV~~~~~L~~eTl~LAV~~lDRfL 241 (402)
=..+||||++-. ...-..|.++++-.++|.=+
T Consensus 40 GselVdWLi~~~-~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 40 GSGVIDWLVSNK-LVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp HHHHHHHHHHHT-SSSSHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCe
Confidence 568999999943 33345788999888887643
Done!