BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043578
         (639 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
           Thermus Thermophilus Hb8
          Length = 552

 Score = 33.9 bits (76), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 256 AIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATL 315
            + R  +   F     H +D  A     ++ L  SGE T +   A+     D  + RA  
Sbjct: 18  GLGRALAQGGFTLTLVHTNDTHAHLEPVELTL--SGEKTPVGGVARRVALFDRVWARAKN 75

Query: 316 ICESIARKVFPKTLY-TEYEGIEDAHYAYRVRDR 348
                A  VF  TLY  +Y G+ D ++ +R+R R
Sbjct: 76  PLFLDAGDVFQGTLYFNQYRGLADRYFMHRLRYR 109


>pdb|2G6T|A Chain A, Crystal Structure Of An Uncharacterized Protein From
           Clostridium Acetobutylicum
 pdb|2G6T|B Chain B, Crystal Structure Of An Uncharacterized Protein From
           Clostridium Acetobutylicum
          Length = 306

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 525 WGMNTDFQKVFDLILQVAVNGNLKPEQMIKR----LFVFSDMEFDQASANPWETDYQVIV 580
           WG+N ++   +D +L     GNL  E +I +     ++      D+   + +E DY +I 
Sbjct: 7   WGVNDEYTLAYDKLLFEISKGNLSIEALISKDKYAKYIDGKEVIDKTEISNYEFDYIIIF 66

Query: 581 NKDSRS 586
           NK+  S
Sbjct: 67  NKERYS 72


>pdb|4EAZ|A Chain A, Vgll1-Tead4 Structure
 pdb|4EAZ|B Chain B, Vgll1-Tead4 Structure
          Length = 223

 Score = 29.6 bits (65), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 313 ATLICESIARKVFPKTLYTEYEGIEDAHYAYRV-RDRLRKQVLVPLRKALELPEVYI 368
           +T +C S  ++V  K + TEY   E+ HY YR+ R  L + ++  + K   LPE Y+
Sbjct: 120 STKVC-SFGKQVVEK-VETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLPEKYM 174


>pdb|3JUA|A Chain A, Structural Basis Of Yap Recognition By Tead4 In The Hippo
           Pathway
 pdb|3JUA|C Chain C, Structural Basis Of Yap Recognition By Tead4 In The Hippo
           Pathway
 pdb|3JUA|E Chain E, Structural Basis Of Yap Recognition By Tead4 In The Hippo
           Pathway
 pdb|3JUA|G Chain G, Structural Basis Of Yap Recognition By Tead4 In The Hippo
           Pathway
          Length = 220

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 313 ATLICESIARKVFPKTLYTEYEGIEDAHYAYRV-RDRLRKQVLVPLRKALELPEVYI 368
           +T +C S  ++V  K + TEY   E+ HY YR+ R  L + ++  + K   LPE Y+
Sbjct: 117 STKVC-SFGKQVVEK-VETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLPEKYM 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,764,621
Number of Sequences: 62578
Number of extensions: 703519
Number of successful extensions: 1281
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 6
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)