BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043578
(639 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UNY4|YL728_MIMIV Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L728 PE=4 SV=1
Length = 572
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 182/352 (51%), Gaps = 52/352 (14%)
Query: 296 ISLAAKWCPSIDSSFDRA-TLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVL 354
ISL AKW PS +++A LI +SI ++ G+ Y +++L
Sbjct: 157 ISLCAKWAPSEKQHYNKAPLLIADSIRSQM----------GLTPRQY---------RKML 197
Query: 355 VPLRKALELPEVYIGANRWDSLPYNRVASVA-MKL------------YKDKFLMHDPERF 401
LR L++ E+ + +++D + ++++ SVA MK+ K F ++ +
Sbjct: 198 TKLRSHLQVLEMLMSTHQYDKIDFSKLPSVALMKMKNAFNRDTNSQGIKSDFRVNLHTSY 257
Query: 402 KKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMA 461
KYL+D+ GK K+ + PHE++G D Q+ E QW I + G N A
Sbjct: 258 TKYLQDLSKGKTKVNTKGIQPHELVGQYLSSSDFDQLVESQWDAIKKGVSDSGTFNNVTA 317
Query: 462 ICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVT 521
+ DVSGSMHG PM+V++ALG+LV+E + P+ G++ITF E P L G +L + +
Sbjct: 318 VVDVSGSMHGQPMQVAIALGILVAECTSGPYHGRVITFHEKPSWHHLTGSNLMEKVKCMR 377
Query: 522 EMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQV--- 578
+ WG +T+ + VFDL+LQ A+N LKP +MI LF+F+DM+F+Q + E+ ++
Sbjct: 378 DAPWGGSTNMKSVFDLVLQNAINAKLKPHEMIDTLFIFTDMQFNQCDCSGLESTFEYGQR 437
Query: 579 ----------------IVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNE 614
+ +S+S P++ +G ++SGFS +L ++ E
Sbjct: 438 KFTEAGYTFPKVVCWNLRTSNSKSLPLMKNDEGYVMLSGFSAELLKCIMNAE 489
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 52 MGFTENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVR 111
+ FTENG + +SG+ C+DFF + S+ +W + +K++ NLR +R
Sbjct: 4 LSFTENGDKAYNTSGSACIDFFVRITRSSQLTDYISTFGKAWNEDKNIAMKILYNLRDIR 63
Query: 112 GTGKSDKEGFYTAALWLH-SLHPKTFACNVALFAE-FGYFKDLPEII 156
TGK +K +L L+ + V F +G +KDL +I+
Sbjct: 64 -TGKGEKIIPVAIMTYLKFHLNSDIYNSIVTDFVTMYGCWKDLLKIV 109
>sp|Q5FVB0|ATX10_XENTR Ataxin-10 OS=Xenopus tropicalis GN=atxn10 PE=2 SV=1
Length = 485
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 236 LEKERASALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAEC 280
+ +E+ S L+ K+D A + YS PD ++Y V DHF C
Sbjct: 193 INREKVSTLQDPSKLDVALSVVTAYSKYPDAEWMYLIVMDHFLLC 237
>sp|O14160|SYVM_SCHPO Valine--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vas1 PE=3 SV=2
Length = 950
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 25/193 (12%)
Query: 285 MKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYR 344
+ L+ +G + + + WCP ++S+ + + I + P T Y + +E + Y
Sbjct: 182 ISLFNAGLIYRANRFVNWCPKLESAVSDIEVESQQINK---PVTKYVDNTPVEFG-WLYE 237
Query: 345 VRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKY 404
+ +L L + PE G +R +V+ HD ER+KKY
Sbjct: 238 ISYQLEGSDNEQLNVSTTRPETIFG---------DRAIAVS---------PHD-ERYKKY 278
Query: 405 LEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICD 464
+ + K + L+P ++D F G + IVD + K +C++I D
Sbjct: 279 VG--RFVKHPLIDDLLIPVICDNAVDRHFGTGVLKITPMHSIVDYEIAKRHNIDCVSIMD 336
Query: 465 VSGSMHGTPMEVS 477
SG++ EV+
Sbjct: 337 KSGNLINCSKEVN 349
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 18 SKQSDPTAAISDPFMNLMAANFNKTAMATPTPPPMGFTENGSGTFLSSGNPCLDFFFHVV 77
S S P + PF +++++ +M+ PT P +GF +G+P L+ + V
Sbjct: 57 STLSSPINGMGPPF-SVISSPMGPHSMSVPTTPTLGF---------GTGSPQLNSPMNPV 106
Query: 78 PST----PPQTLTGFLN--ASWAHNPLTTLKLICNLRGVRGTGK 115
ST PP L G L A + N + K IC + G R +GK
Sbjct: 107 SSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 150
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 18 SKQSDPTAAISDPFMNLMAANFNKTAMATPTPPPMGFTENGSGTFLSSGNPCLDFFFHVV 77
S S P + PF +++++ +M+ PT P +GF S+G+P L + V
Sbjct: 52 STLSSPINGMGPPF-SVISSPMGPHSMSVPTTPTLGF---------STGSPQLSSPMNPV 101
Query: 78 PST----PPQTLTGFLN--ASWAHNPLTTLKLICNLRGVRGTGK 115
S+ PP L G L A + N + K IC + G R +GK
Sbjct: 102 SSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 145
>sp|A6LJM9|SYL_THEM4 Leucine--tRNA ligase OS=Thermosipho melanesiensis (strain BI429 /
DSM 12029) GN=leuS PE=3 SV=1
Length = 823
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 10/139 (7%)
Query: 217 PAVADTRELRVANAMQRNKLEKERASALRKEKKIDTAKKAIARYSSDPDF-RFLYDHVSD 275
P D L NA +NK+ E + K ID + I + D+ R + +
Sbjct: 75 PFGYDAFGLPAENAAIKNKIHPEVWTF----KNIDIIRNQIKKIGISYDWSREVITCTEE 130
Query: 276 HFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLI---CESIARKVFPKTLYTE 332
++ +KLYE+G K A WCPS + ++ CE +V K L
Sbjct: 131 YYKWTQWIFLKLYENGLAYKKKAAVNWCPSCQTVLANEQVVDGKCERCGTEVTMKHLEQW 190
Query: 333 YEGIEDAHYAYRVRDRLRK 351
Y I D YA ++ + + K
Sbjct: 191 YFKITD--YAEKLLNDIDK 207
>sp|Q86TW2|ADCK1_HUMAN Uncharacterized aarF domain-containing protein kinase 1 OS=Homo
sapiens GN=ADCK1 PE=2 SV=2
Length = 530
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 358 RKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAA 417
RKAL+L W S+ +A+ + Y +K+L DP F V+ G+A +A
Sbjct: 3 RKALKLAS-------WTSMA---LAASGIYFYSNKYL--DPNDFGA----VRVGRA-VAT 45
Query: 418 GALLPHEIIGSLDD-PFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEV 476
A++ ++ + SL P+ + +L+ K + + LR+ +C++ + GT ++V
Sbjct: 46 TAVISYDYLTSLKSVPYGSEEYLQLRSKSW--PVFLQVHLRSARRLCELCCANRGTFIKV 103
Query: 477 SVALGVLVSELSEEPWKGKLITFSENPE 504
LG L L EE + S+ P+
Sbjct: 104 GQHLGALDYLLPEEYTSTLKVLHSQAPQ 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,611,938
Number of Sequences: 539616
Number of extensions: 10596518
Number of successful extensions: 28751
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 28639
Number of HSP's gapped (non-prelim): 140
length of query: 639
length of database: 191,569,459
effective HSP length: 124
effective length of query: 515
effective length of database: 124,657,075
effective search space: 64198393625
effective search space used: 64198393625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)