Query 043578
Match_columns 639
No_of_seqs 136 out of 159
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11443 DUF2828: Domain of un 100.0 6E-179 1E-183 1460.6 52.1 511 55-628 1-534 (534)
2 cd01461 vWA_interalpha_trypsin 98.9 7.5E-08 1.6E-12 90.1 15.1 157 457-627 3-170 (171)
3 cd01462 VWA_YIEM_type VWA YIEM 98.6 3.3E-07 7.1E-12 85.4 12.0 102 458-563 2-105 (152)
4 PRK10997 yieM hypothetical pro 98.6 2.3E-07 5.1E-12 103.5 11.1 106 457-567 324-431 (487)
5 cd01465 vWA_subgroup VWA subgr 98.6 2.7E-06 5.7E-11 79.8 15.8 148 458-613 2-152 (170)
6 COG2425 Uncharacterized protei 98.5 8.1E-07 1.8E-11 97.9 11.2 140 420-567 236-381 (437)
7 PF05762 VWA_CoxE: VWA domain 98.4 7.2E-07 1.6E-11 89.9 8.7 144 422-582 31-178 (222)
8 PF13768 VWA_3: von Willebrand 98.1 1.1E-05 2.3E-10 75.5 8.4 140 458-612 2-147 (155)
9 cd01463 vWA_VGCC_like VWA Volt 98.1 2.5E-05 5.3E-10 76.1 11.1 107 456-563 13-134 (190)
10 cd00198 vWFA Von Willebrand fa 98.0 0.00012 2.5E-09 65.6 12.9 106 458-565 2-114 (161)
11 cd01470 vWA_complement_factors 98.0 0.00011 2.4E-09 71.8 13.7 154 458-613 2-177 (198)
12 cd01464 vWA_subfamily VWA subf 98.0 7.2E-05 1.6E-09 71.8 11.9 145 458-613 5-160 (176)
13 cd01450 vWFA_subfamily_ECM Von 97.9 0.00017 3.7E-09 66.0 12.0 109 458-566 2-117 (161)
14 smart00327 VWA von Willebrand 97.8 0.0002 4.2E-09 66.4 11.4 106 458-563 3-116 (177)
15 cd01451 vWA_Magnesium_chelatas 97.8 0.00017 3.6E-09 69.6 11.4 106 460-566 4-112 (178)
16 cd01456 vWA_ywmD_type VWA ywmD 97.8 0.00016 3.5E-09 71.2 11.0 106 455-566 19-148 (206)
17 cd01482 vWA_collagen_alphaI-XI 97.7 0.00035 7.6E-09 66.4 10.9 107 458-565 2-116 (164)
18 cd01474 vWA_ATR ATR (Anthrax T 97.7 0.00043 9.3E-09 67.1 11.4 107 458-564 6-115 (185)
19 cd01472 vWA_collagen von Wille 97.7 0.00041 8.9E-09 65.5 10.9 105 458-563 2-114 (164)
20 cd01454 vWA_norD_type norD typ 97.6 0.00057 1.2E-08 65.4 11.2 105 459-567 3-118 (174)
21 TIGR03788 marine_srt_targ mari 97.6 0.00026 5.6E-09 81.1 10.4 142 457-612 272-419 (596)
22 cd01480 vWA_collagen_alpha_1-V 97.6 0.00052 1.1E-08 66.8 11.1 104 458-563 4-120 (186)
23 cd01471 vWA_micronemal_protein 97.6 0.00077 1.7E-08 65.0 11.4 163 458-629 2-184 (186)
24 cd01466 vWA_C3HC4_type VWA C3H 97.5 0.00085 1.8E-08 63.5 10.3 104 458-564 2-110 (155)
25 cd01476 VWA_integrin_invertebr 97.4 0.0023 5E-08 60.0 11.7 108 458-565 2-116 (163)
26 PF13519 VWA_2: von Willebrand 97.2 0.0012 2.6E-08 60.9 8.2 100 458-563 1-110 (172)
27 PF09967 DUF2201: VWA-like dom 97.2 0.00077 1.7E-08 62.8 6.7 96 460-568 2-98 (126)
28 cd01457 vWA_ORF176_type VWA OR 97.2 0.0037 8E-08 61.5 11.4 106 457-566 3-121 (199)
29 TIGR02031 BchD-ChlD magnesium 97.2 0.0033 7.2E-08 72.4 12.3 110 456-567 407-518 (589)
30 cd01467 vWA_BatA_type VWA BatA 97.1 0.0027 5.8E-08 60.5 9.7 103 458-565 4-115 (180)
31 TIGR02442 Cob-chelat-sub cobal 97.1 0.0054 1.2E-07 71.2 13.3 119 449-567 458-579 (633)
32 PF00092 VWA: von Willebrand f 97.0 0.0034 7.3E-08 58.6 8.4 108 458-566 1-117 (178)
33 PRK13685 hypothetical protein; 96.9 0.0092 2E-07 63.6 11.9 156 456-612 88-264 (326)
34 cd01475 vWA_Matrilin VWA_Matri 96.8 0.01 2.2E-07 59.5 10.8 106 458-563 4-119 (224)
35 PRK13406 bchD magnesium chelat 96.8 0.012 2.5E-07 68.0 12.5 111 455-567 400-512 (584)
36 PTZ00441 sporozoite surface pr 96.7 0.014 3E-07 67.0 11.9 106 458-564 44-161 (576)
37 cd01469 vWA_integrins_alpha_su 96.6 0.021 4.5E-07 55.3 11.3 105 459-564 3-115 (177)
38 TIGR03436 acidobact_VWFA VWFA- 96.4 0.025 5.4E-07 58.9 11.0 102 458-563 55-175 (296)
39 PF10138 vWA-TerF-like: vWA fo 96.2 0.027 5.9E-07 57.0 9.3 101 459-567 4-119 (200)
40 COG3552 CoxE Protein containin 96.0 0.014 3E-07 63.6 6.8 100 456-562 218-321 (395)
41 TIGR00868 hCaCC calcium-activa 95.9 0.039 8.6E-07 66.2 10.7 105 459-565 307-417 (863)
42 cd01473 vWA_CTRP CTRP for CS 95.7 0.076 1.7E-06 52.6 10.3 108 459-566 3-122 (192)
43 COG1240 ChlD Mg-chelatase subu 95.7 0.29 6.4E-06 51.4 14.7 152 457-610 79-237 (261)
44 cd01477 vWA_F09G8-8_type VWA F 95.6 0.13 2.7E-06 51.4 11.2 105 458-563 21-142 (193)
45 COG4245 TerY Uncharacterized p 94.6 0.1 2.3E-06 52.5 7.2 103 458-564 5-119 (207)
46 cd01481 vWA_collagen_alpha3-VI 93.8 0.85 1.8E-05 44.1 11.7 106 458-563 2-117 (165)
47 cd01460 vWA_midasin VWA_Midasi 93.4 0.75 1.6E-05 48.6 11.3 110 456-567 60-181 (266)
48 cd01453 vWA_transcription_fact 92.4 1.4 3E-05 43.4 11.0 106 454-563 1-118 (183)
49 cd01458 vWA_ku Ku70/Ku80 N-ter 90.2 2.5 5.4E-05 42.3 10.4 107 457-565 2-140 (218)
50 KOG2353 L-type voltage-depende 86.9 3 6.6E-05 51.8 10.0 91 449-540 218-318 (1104)
51 cd01452 VWA_26S_proteasome_sub 85.4 8.3 0.00018 38.8 10.6 86 456-541 3-97 (187)
52 COG3864 Uncharacterized protei 84.0 4.5 9.8E-05 43.9 8.5 90 456-567 261-357 (396)
53 PF11775 CobT_C: Cobalamin bio 83.3 1.4 2.9E-05 45.5 4.1 42 461-502 17-59 (219)
54 KOG4465 Uncharacterized conser 74.6 12 0.00026 41.4 8.1 135 459-610 431-590 (598)
55 PF04285 DUF444: Protein of un 74.0 10 0.00022 42.8 7.7 107 456-579 244-355 (421)
56 COG2945 Predicted hydrolase of 73.5 2 4.2E-05 43.9 1.8 66 79-149 42-115 (210)
57 TIGR01651 CobT cobaltochelatas 71.8 11 0.00025 44.0 7.6 42 461-502 397-439 (600)
58 COG4547 CobT Cobalamin biosynt 65.5 3.9 8.5E-05 46.3 2.2 26 461-486 418-443 (620)
59 COG4867 Uncharacterized protei 65.1 20 0.00043 40.7 7.4 94 455-564 462-564 (652)
60 cd01455 vWA_F11C1-5a_type Von 60.8 32 0.00069 35.0 7.4 105 459-567 3-126 (191)
61 COG2304 Uncharacterized protei 54.2 1.1E+02 0.0025 32.6 10.8 108 456-565 37-147 (399)
62 PRK05325 hypothetical protein; 50.6 17 0.00038 40.7 4.0 111 455-579 219-331 (401)
63 PF13446 RPT: A repeated domai 50.2 27 0.00059 28.5 4.2 26 74-99 11-36 (62)
64 TIGR02877 spore_yhbH sporulati 44.6 24 0.00053 39.2 4.0 139 456-610 200-343 (371)
65 PF13618 Gluconate_2-dh3: Gluc 43.5 67 0.0015 29.5 6.2 84 313-413 4-88 (131)
66 cd00006 PTS_IIA_man PTS_IIA, P 35.5 3.1E+02 0.0068 25.0 9.2 67 454-543 55-121 (122)
67 COG2718 Uncharacterized conser 26.0 81 0.0017 35.5 4.2 100 456-562 244-345 (423)
68 smart00467 GS GS motif. Aa app 25.6 39 0.00084 24.8 1.1 13 465-477 11-23 (30)
69 COG5610 Predicted hydrolase (H 23.8 55 0.0012 37.7 2.5 61 554-623 116-178 (635)
No 1
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=100.00 E-value=6.5e-179 Score=1460.56 Aligned_cols=511 Identities=56% Similarity=0.912 Sum_probs=487.4
Q ss_pred ccCCCccccCCCCcccccccccCCCCChhhHHHHHHHHHhcCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHhhChh
Q 043578 55 TENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPK 134 (639)
Q Consensus 55 TENga~t~~SSgs~~lD~F~~v~~~t~~~~l~~ll~~AW~eDpl~tLKlif~lR~IRg~GKgeR~~Fy~a~~WL~~~HP~ 134 (639)
||||++||.|||||||||||++++.++.+++.+||.+||+|||++|||||||+||||| |||||++||++++|||++||+
T Consensus 1 TENga~t~~SS~~~~lDlF~~v~~~~~~~~l~~l~~~Aw~eDp~~aLKiif~lRdIR~-GkgeR~~F~~~~~wL~~~hP~ 79 (534)
T PF11443_consen 1 TENGAVTYASSGSPCLDLFFHVGPRTSPERLKKLFEAAWAEDPLTALKIIFYLRDIRG-GKGEREGFYRALKWLAENHPR 79 (534)
T ss_pred CCCCccchhccCChHHHhhhhcCCCCChHHHHHHHHHHHhcCHHHHHHHHHHccCCCC-CCccHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999999999999999999999999999999995 999999999999999999999
Q ss_pred hHHHhhHhhhhcCCCCChHHHHHHHhcCCchhhhhHHHHHHhhcCCcccccccccccccchhhhhhccccccccCccccc
Q 043578 135 TFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWERRKRGGSRVVKKGIYSRRGRKFRMIMSRSRNCKQQPKRRK 214 (639)
Q Consensus 135 Tl~~NL~~l~~~GywKDLl~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (639)
|+++|++.+++|||||||++||+++++|...+..++..+
T Consensus 80 tl~~nl~~i~e~GywkDLl~ll~~~~e~~~~~~~~~~~~----------------------------------------- 118 (534)
T PF11443_consen 80 TLAKNLPHIPEYGYWKDLLELLYTILEGKLSRKIDPKEV----------------------------------------- 118 (534)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHhcCccccccCHHHH-----------------------------------------
Confidence 999999999999999999999999999987764333332
Q ss_pred CCCcccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 043578 215 KKPAVADTRELRVANAMQRNKLEKERASALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVT 294 (639)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~~~d~~yraL~~~va~lfa~qL~~D~~~L~~g~~~ 294 (639)
...++.+++.+.+++..++++|+++|+++++++++++ .+||+||+||++|+++|++||++|+++|++|+.+
T Consensus 119 -----~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~----~~d~~yr~L~~~v~~lfa~qL~~D~~~l~~~~~~ 189 (534)
T PF11443_consen 119 -----LLRREERVANSEEKNQEEKAEAKEERKEKRAQLAKRA----SNDPFYRALHDTVARLFAEQLKKDLEALNSGKKE 189 (534)
T ss_pred -----hhhhHHHHhhHHHhhhHhHHHhHHHHHHHHHHHHHHh----ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1125678888888899999999999999999999999 8999999999999999999999999999999888
Q ss_pred cccccccccCCCCCCcchhhhHHHHHHHHhCCCCcccccCCCchHHHHHHHHHHHHHHHhHHhhhhcCcccccccccCCC
Q 043578 295 KISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWD 374 (639)
Q Consensus 295 ~iSLaAKW~PS~~~s~Dr~t~i~~~IA~~Lfp~~s~~~~~~~~~~~Y~~~~R~~lRr~~LspLRk~L~l~E~~msa~~w~ 374 (639)
+||||||||||+++|||++|+||++||++|||+++ ++++|++|||++||||||+|+|||++||+++|+
T Consensus 190 ~iSLaAKW~PS~~~s~d~~t~~a~~ia~~lfp~~~------------l~~~~~~yRK~~Ls~LRk~l~ivE~~ms~~~w~ 257 (534)
T PF11443_consen 190 KISLAAKWAPSENSSHDRSTLIAKAIARLLFPRES------------LGRARKEYRKEVLSPLRKALEIVERYMSANDWD 257 (534)
T ss_pred ccchHHhhCCCCCCCcchHHHHHHHHHHHhCchhh------------hhhHHHHHHHHHHHHHHHhhcccHHHhhhcccc
Confidence 99999999999999999999999999999999865 789999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHhHHHHhhcCHHHHHHHHHHHhcccccccccccchHHHHhhhcCCC-CcchHHHHHHHHHHHHHhhc
Q 043578 375 SLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPF-DGGQVAELQWKRIVDDLMQK 453 (639)
Q Consensus 375 ~I~Y~rVpSvAMk~Yk~aF~khD~eRf~~YL~~V~~GkaKI~a~aLlPheIi~~~~~~~-~~~~vae~QWk~lvd~l~~~ 453 (639)
+|+|+||||+||++|+++|.|||+|||++||++|++||+|||||+|||||||++++.+. +.+.++|+||++|||+++++
T Consensus 258 ~i~Y~rVpS~Am~~y~~aF~k~D~erf~~yl~~v~~G~~ki~~~~L~P~eiv~~~~~~~~~~~~~~e~qWk~lv~~~~~~ 337 (534)
T PF11443_consen 258 EIDYSRVPSVAMKKYKKAFLKHDEERFQEYLEDVKKGKAKINAGTLLPHEIVASALKGDSDDSEVAELQWKTLVDYLKDS 337 (534)
T ss_pred CCCccccccHHHHHHHHHHHhhCHHHHHHHHHHHhcCcceecCCCCCHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999998761 23468999999999999999
Q ss_pred CCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCCCCCccHHH
Q 043578 454 GKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQK 533 (639)
Q Consensus 454 G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~a 533 (639)
|+++||||||||||||+|+||+|||||||||||+++|||||+|||||++|+||+|+|.||.||+++|++++|||||||+|
T Consensus 338 g~l~n~iav~DvSGSM~~~pm~vaiaLgll~ae~~~~pf~~~~ITFs~~P~~~~i~g~~l~ekv~~~~~~~wg~nTn~~a 417 (534)
T PF11443_consen 338 GSLENCIAVCDVSGSMSGPPMDVAIALGLLIAELNKGPFKGRFITFSENPQLHKIKGDTLREKVRFIRRMDWGMNTNFQA 417 (534)
T ss_pred CCccceEEEEecCCccCccHHHHHHHHHHHHHHhcccccCCeEEeecCCceEEEecCCCHHHHHHHHHhCCcccCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccceEEEEecCCcccccC---CCCchhHHHHHHh-----------------cC-CCCCcccC
Q 043578 534 VFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASA---NPWETDYQVIVNK-----------------DS-RSTPVLGT 592 (639)
Q Consensus 534 VFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~---~~w~T~ye~ik~k-----------------~s-~~~PVt~~ 592 (639)
|||+||++||+|||+||||||+||||||||||+|++ ++|+|+||.|+++ ++ ..+||+++
T Consensus 418 VFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~~P~iVFWNl~~~~~~~PV~~~ 497 (534)
T PF11443_consen 418 VFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYELPEIVFWNLRGRSSNKPVTAN 497 (534)
T ss_pred HHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCCCCceEEeecCCCCCCCCceeC
Confidence 999999999999999999999999999999999988 5699999999999 33 45999999
Q ss_pred CCCeEEeccCCHHHHHHHHcCCC-CCCHHHHHHHhhc
Q 043578 593 QKGVALVSGFSKNMLTLFLDNEG-VINPEQVMEAAIS 628 (639)
Q Consensus 593 ~~GvaLVSGfS~~llK~fLe~~g-~~~P~~vm~~aI~ 628 (639)
++||||||||||+|||+||++|| .+||+++|++||+
T Consensus 498 ~~GvaLVSGfS~~llk~~l~~~~~~~~P~~~m~~ai~ 534 (534)
T PF11443_consen 498 EKGVALVSGFSPNLLKMFLEGGGKEMDPYSVMLKAIS 534 (534)
T ss_pred CCCeEEEecCCHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 99999999999999999999987 8999999999996
No 2
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.85 E-value=7.5e-08 Score=90.10 Aligned_cols=157 Identities=15% Similarity=0.247 Sum_probs=108.3
Q ss_pred cceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCCeEEeeCCCCceee-----cCCCCHHHHHHHHHhCCCCCCcc
Q 043578 457 RNCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKGKLITFSENPELQV-----LEGDSLRSRTDFVTEMEWGMNTD 530 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~~fITFS~~P~l~~-----i~g~~L~ekv~~i~~~~wg~nTn 530 (639)
.|.+.|+|+||||.|.+++.+. +|..++..+..+.. =.+|+|++++.... ....++.+.++++.++..++.||
T Consensus 3 ~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~-~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~ 81 (171)
T cd01461 3 KEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDY-FNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTN 81 (171)
T ss_pred ceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCE-EEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCcC
Confidence 4688999999999999888654 67777787765542 26899999977542 12346777888888888899999
Q ss_pred HHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEeccCCHHHHHHH
Q 043578 531 FQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLF 610 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVSGfS~~llK~f 610 (639)
+.+.++..++.... ++.-++.|+||||.+-+. ...-++.+++.....+||.. +.+=++....+|+.+
T Consensus 82 l~~al~~a~~~l~~----~~~~~~~iillTDG~~~~-----~~~~~~~~~~~~~~~i~i~~----i~~g~~~~~~~l~~i 148 (171)
T cd01461 82 MNDALEAALELLNS----SPGSVPQIILLTDGEVTN-----ESQILKNVREALSGRIRLFT----FGIGSDVNTYLLERL 148 (171)
T ss_pred HHHHHHHHHHhhcc----CCCCccEEEEEeCCCCCC-----HHHHHHHHHHhcCCCceEEE----EEeCCccCHHHHHHH
Confidence 99999888776644 245689999999998321 12334555544444555543 333356888899888
Q ss_pred HcC-CCC----CCHHHHHHHhh
Q 043578 611 LDN-EGV----INPEQVMEAAI 627 (639)
Q Consensus 611 Le~-~g~----~~P~~vm~~aI 627 (639)
-+. +|. -++.++-.+.+
T Consensus 149 a~~~gG~~~~~~~~~~~~~~~~ 170 (171)
T cd01461 149 AREGRGIARRIYETDDIESQLL 170 (171)
T ss_pred HHcCCCeEEEecChHHHHHHhc
Confidence 863 333 45666655543
No 3
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.64 E-value=3.3e-07 Score=85.36 Aligned_cols=102 Identities=22% Similarity=0.341 Sum_probs=78.6
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCC-CCeEEeeCCCCceeecC-CCCHHHHHHHHHhCCCCCCccHHHHH
Q 043578 458 NCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPW-KGKLITFSENPELQVLE-GDSLRSRTDFVTEMEWGMNTDFQKVF 535 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf-~~~fITFS~~P~l~~i~-g~~L~ekv~~i~~~~wg~nTn~~aVF 535 (639)
+.+.++|+||||.+.+++.+..+...+.+....+- +=.+|+|++..+...+. ..++.+-++.+....++++||+..+|
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~ggT~l~~al 81 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGGTDINKAL 81 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCCcCHHHHH
Confidence 46789999999999888888887777777654321 23689999996555554 35788888888888899999999999
Q ss_pred HHHHHHHHhCCCCcccccceEEEEecCC
Q 043578 536 DLILQVAVNGNLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 536 dlIL~~Av~~~l~~e~M~k~lfVfSDMe 563 (639)
..++....+... -...|+||||.+
T Consensus 82 ~~a~~~l~~~~~----~~~~ivliTDG~ 105 (152)
T cd01462 82 RYALELIERRDP----RKADIVLITDGY 105 (152)
T ss_pred HHHHHHHHhcCC----CCceEEEECCCC
Confidence 988877655432 246899999996
No 4
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.59 E-value=2.3e-07 Score=103.49 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=82.1
Q ss_pred cceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCC-eEEeeCCCCceeecC-CCCHHHHHHHHHhCCCCCCccHHHH
Q 043578 457 RNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKG-KLITFSENPELQVLE-GDSLRSRTDFVTEMEWGMNTDFQKV 534 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~-~fITFS~~P~l~~i~-g~~L~ekv~~i~~~~wg~nTn~~aV 534 (639)
...|+++|+||||+|.|.+.|.++++.++..+...-.. ++|.||+...-..+. ..++.+-++++... .|+.|||..+
T Consensus 324 GpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GGTDl~~a 402 (487)
T PRK10997 324 GPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGGTDLAPC 402 (487)
T ss_pred CcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCCCcHHHH
Confidence 45799999999999999877777666655554322222 599999977654566 46899999999755 7899999999
Q ss_pred HHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 535 FDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 535 FdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
++.++....+......+ ||||||...+..
T Consensus 403 L~~al~~l~~~~~r~ad----IVVISDF~~~~~ 431 (487)
T PRK10997 403 LRAIIEKMQGREWFDAD----AVVISDFIAQRL 431 (487)
T ss_pred HHHHHHHHcccccCCce----EEEECCCCCCCC
Confidence 99999988877666666 899999986543
No 5
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.56 E-value=2.7e-06 Score=79.77 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=96.3
Q ss_pred ceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCCeEEeeCCCCcee-ecC-CCCHHHHHHHHHhCCCCCCccHHHH
Q 043578 458 NCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKGKLITFSENPELQ-VLE-GDSLRSRTDFVTEMEWGMNTDFQKV 534 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~~fITFS~~P~l~-~i~-g~~L~ekv~~i~~~~wg~nTn~~aV 534 (639)
|.+.|+|+||||.+..++.+. ++.+++..+..+. +=.+|+|+.+++.. ... +.+...-.+.+.++.+++.|++...
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~-~v~li~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~T~~~~a 80 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDD-RLAIVTYDGAAETVLPATPVRDKAAILAAIDRLTAGGSTAGGAG 80 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCC-EEEEEEecCCccEEecCcccchHHHHHHHHHcCCCCCCCCHHHH
Confidence 567899999999987676665 5556666665433 45799999998854 222 3455444556778888999999999
Q ss_pred HHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEeccCCHHHHHHHHcC
Q 043578 535 FDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDN 613 (639)
Q Consensus 535 FdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVSGfS~~llK~fLe~ 613 (639)
+...+....+..-+. =++.||+|||.+-+... ..|+.-.+.+++.....++|. - +++=+++...+|+.+-..
T Consensus 81 l~~a~~~~~~~~~~~--~~~~ivl~TDG~~~~~~-~~~~~~~~~~~~~~~~~v~i~--~--i~~g~~~~~~~l~~ia~~ 152 (170)
T cd01465 81 IQLGYQEAQKHFVPG--GVNRILLATDGDFNVGE-TDPDELARLVAQKRESGITLS--T--LGFGDNYNEDLMEAIADA 152 (170)
T ss_pred HHHHHHHHHhhcCCC--CeeEEEEEeCCCCCCCC-CCHHHHHHHHHHhhcCCeEEE--E--EEeCCCcCHHHHHHHHhc
Confidence 998888776543222 24789999999866432 234433344433222333332 1 222267788888888753
No 6
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.47 E-value=8.1e-07 Score=97.87 Aligned_cols=140 Identities=20% Similarity=0.173 Sum_probs=102.8
Q ss_pred cchHHHHhhhcCCCCcchHHHHHHHHHHHH-HhhcCCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCC-eEE
Q 043578 420 LLPHEIIGSLDDPFDGGQVAELQWKRIVDD-LMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKG-KLI 497 (639)
Q Consensus 420 LlPheIi~~~~~~~~~~~vae~QWk~lvd~-l~~~G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~-~fI 497 (639)
|+|-|.+.-....+.-.=-..+-|+.|..+ ++. .+-.-.|+.+|-||||+|.|+.+|=|.++-+.++..--.++ .+|
T Consensus 236 Llp~E~~~l~~~~L~~eFy~kl~e~kLl~Yr~~g-k~~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~ 314 (437)
T COG2425 236 LLPIERASLADPILSVEFYRKLVEKKLLTYRLQG-KSEGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVI 314 (437)
T ss_pred cCcHHHHHhhhHHHHHHHHHHhhhccchhhhhhc-CCCCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEE
Confidence 556555553332211112334445555443 332 33366889999999999999999888888888887777777 678
Q ss_pred eeCCCCceeec--CC--CCHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 498 TFSENPELQVL--EG--DSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 498 TFS~~P~l~~i--~g--~~L~ekv~~i~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
-|++ +++++ .. .++.|-++++...-=|+ |||.+++...|+.+...++-+ -.|+|+||-+++-.
T Consensus 315 lF~s--~~~~~el~~k~~~~~e~i~fL~~~f~GG-TD~~~~l~~al~~~k~~~~~~----adiv~ITDg~~~~~ 381 (437)
T COG2425 315 LFDS--EVIEYELYEKKIDIEELIEFLSYVFGGG-TDITKALRSALEDLKSRELFK----ADIVVITDGEDERL 381 (437)
T ss_pred Eecc--cceeeeecCCccCHHHHHHHHhhhcCCC-CChHHHHHHHHHHhhcccccC----CCEEEEeccHhhhh
Confidence 8888 55555 23 38999999999988888 999999999999999998888 45899999998765
No 7
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.42 E-value=7.2e-07 Score=89.93 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=87.9
Q ss_pred hHHHHhhhcCCCCcchHHHHHHHHHHHHHhhcCCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCC
Q 043578 422 PHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSE 501 (639)
Q Consensus 422 PheIi~~~~~~~~~~~vae~QWk~lvd~l~~~G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~ 501 (639)
+..|-+.+..+ +.+.+..|+.=.. ..-...|++|||||||.+-.- +.|.++.+=....+ +=+++.|+.
T Consensus 31 rrTir~~~r~~---g~~~~l~~r~~r~-----~~~~~lvvl~DvSGSM~~~s~---~~l~~~~~l~~~~~-~~~~f~F~~ 98 (222)
T PF05762_consen 31 RRTIRASLRTG---GEPLRLVRRRRRP-----RKPRRLVVLCDVSGSMAGYSE---FMLAFLYALQRQFR-RVRVFVFST 98 (222)
T ss_pred HHHHHHHHhcC---CCcceeecccccc-----CCCccEEEEEeCCCChHHHHH---HHHHHHHHHHHhCC-CEEEEEEee
Confidence 34444444433 3355556654211 222368999999999997432 23333333223333 778999998
Q ss_pred CCceee--cCCCCHHHHHHHHH--hCCCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHH
Q 043578 502 NPELQV--LEGDSLRSRTDFVT--EMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQ 577 (639)
Q Consensus 502 ~P~l~~--i~g~~L~ekv~~i~--~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye 577 (639)
.-.-+. +...+..+.+..+. ...||+.|||..+|...++......+.. ..|+|+||.. +......+....+
T Consensus 99 ~l~~vT~~l~~~~~~~~l~~~~~~~~~~~GgTdi~~aL~~~~~~~~~~~~~~----t~vvIiSDg~-~~~~~~~~~~~l~ 173 (222)
T PF05762_consen 99 RLTEVTPLLRRRDPEEALARLSALVQSFGGGTDIGQALREFLRQYARPDLRR----TTVVIISDGW-DTNDPEPLAEELR 173 (222)
T ss_pred ehhhhhhhhccCCHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccC----cEEEEEeccc-ccCChHHHHHHHH
Confidence 644222 23456777777765 4569999999999999888886665533 3589999973 2222233456666
Q ss_pred HHHHh
Q 043578 578 VIVNK 582 (639)
Q Consensus 578 ~ik~k 582 (639)
.|+++
T Consensus 174 ~l~~r 178 (222)
T PF05762_consen 174 RLRRR 178 (222)
T ss_pred HHHHh
Confidence 66666
No 8
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.11 E-value=1.1e-05 Score=75.49 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=98.0
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCce-----eecCCCCHHHHHHHHHhCCC-CCCccH
Q 043578 458 NCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPEL-----QVLEGDSLRSRTDFVTEMEW-GMNTDF 531 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l-----~~i~g~~L~ekv~~i~~~~w-g~nTn~ 531 (639)
|.+.|+|+||||.|.+-.+--+|-+++.+|..+- +=.+|+|++++.. +..+..++.+-+++|...+- ++.||+
T Consensus 2 ~vvilvD~S~Sm~g~~~~~k~al~~~l~~L~~~d-~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~l 80 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEKELVKDALRAILRSLPPGD-RFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTDL 80 (155)
T ss_pred eEEEEEeCCCCCCCcHHHHHHHHHHHHHhCCCCC-EEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCccH
Confidence 6789999999999987666778888889988765 4578999998662 23345688888999998877 889999
Q ss_pred HHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEeccCCHHHHHHHH
Q 043578 532 QKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFL 611 (639)
Q Consensus 532 ~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVSGfS~~llK~fL 611 (639)
.+..+.++... ....=+..||++||-.+++.. .--.+.+++ ....+++-. +.+=++.++.+|+.+-
T Consensus 81 ~~aL~~a~~~~-----~~~~~~~~IilltDG~~~~~~----~~i~~~v~~-~~~~~~i~~----~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 81 LAALRAALALL-----QRPGCVRAIILLTDGQPVSGE----EEILDLVRR-ARGHIRIFT----FGIGSDADADFLRELA 146 (155)
T ss_pred HHHHHHHHHhc-----ccCCCccEEEEEEeccCCCCH----HHHHHHHHh-cCCCceEEE----EEECChhHHHHHHHHH
Confidence 99998777543 233348899999999985321 122343433 223455433 4444566677777665
Q ss_pred c
Q 043578 612 D 612 (639)
Q Consensus 612 e 612 (639)
+
T Consensus 147 ~ 147 (155)
T PF13768_consen 147 R 147 (155)
T ss_pred H
Confidence 4
No 9
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.10 E-value=2.5e-05 Score=76.05 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=74.7
Q ss_pred CcceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCCCCeEEeeCCCCceeec---------CCCCHHHHHHHHHhCCC
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPWKGKLITFSENPELQVL---------EGDSLRSRTDFVTEMEW 525 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf~~~fITFS~~P~l~~i---------~g~~L~ekv~~i~~~~w 525 (639)
-.|++.|.|+||||.+..++.+-. +..++..+..+. +=.+|+|+.+++...= ...+..+-.+.+..+..
T Consensus 13 p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d-~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 91 (190)
T cd01463 13 PKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDND-FFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLEA 91 (190)
T ss_pred CceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCC-EEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCCC
Confidence 457889999999999988887653 344445553321 2368999999886521 11234455566777888
Q ss_pred CCCccHHHHHHHHHHHHHhCCC-----CcccccceEEEEecCC
Q 043578 526 GMNTDFQKVFDLILQVAVNGNL-----KPEQMIKRLFVFSDME 563 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~~l-----~~e~M~k~lfVfSDMe 563 (639)
++.||+..++...++...+++. ...+.++.|+||||-+
T Consensus 92 ~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~ 134 (190)
T cd01463 92 KGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGV 134 (190)
T ss_pred CCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCC
Confidence 9999999999887776665221 2346788999999987
No 10
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.01 E-value=0.00012 Score=65.59 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=75.1
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhccc--CCCCCeEEeeCCCCceeecCC--CCHHHHHHHHHhCC--CCCCcc
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSELSE--EPWKGKLITFSENPELQVLEG--DSLRSRTDFVTEME--WGMNTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~--~pf~~~fITFS~~P~l~~i~g--~~L~ekv~~i~~~~--wg~nTn 530 (639)
+.+.|+|+||||....++.+.. +..++..+.. +..+=.+|+|+..+....-.. .+..+-.+.+.... .+..||
T Consensus 2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 81 (161)
T cd00198 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKGLGGGTN 81 (161)
T ss_pred cEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhcccCCCCCcc
Confidence 4678999999996666666555 4444444444 456668999999877554422 24555555555555 789999
Q ss_pred HHHHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 531 FQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
+..+|...++...... ...-.+.|+||||-...
T Consensus 82 ~~~al~~~~~~~~~~~--~~~~~~~lvvitDg~~~ 114 (161)
T cd00198 82 IGAALRLALELLKSAK--RPNARRVIILLTDGEPN 114 (161)
T ss_pred HHHHHHHHHHHhcccC--CCCCceEEEEEeCCCCC
Confidence 9999999888887655 44568899999997644
No 11
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.00 E-value=0.00011 Score=71.84 Aligned_cols=154 Identities=11% Similarity=0.114 Sum_probs=90.9
Q ss_pred ceEEEEcCCCCCCCChhHHH-HHHHHHHhhcccCC--CCCeEEeeCCCCceee-c---CCCCHHHHHHHHHhCC-----C
Q 043578 458 NCMAICDVSGSMHGTPMEVS-VALGVLVSELSEEP--WKGKLITFSENPELQV-L---EGDSLRSRTDFVTEME-----W 525 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~va-iaLgLl~aE~~~~p--f~~~fITFS~~P~l~~-i---~g~~L~ekv~~i~~~~-----w 525 (639)
|.+.|+|+||||.+.+++.+ -++.-++..+...+ .+=.+|+|+++++.+. + ...+..+-++.+.+++ +
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHGD 81 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccCCCCCHHHHHHHHHhCCcccccC
Confidence 57789999999998777654 45566666665432 4557899999998643 2 1234444555555554 4
Q ss_pred CCCccHHHHHHHHHHHHHhCCC-C---cccccceEEEEecCCcccccCCCCchhHHHHHHh-cCCCCCcccCCCCeEEe-
Q 043578 526 GMNTDFQKVFDLILQVAVNGNL-K---PEQMIKRLFVFSDMEFDQASANPWETDYQVIVNK-DSRSTPVLGTQKGVALV- 599 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~~l-~---~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k-~s~~~PVt~~~~GvaLV- 599 (639)
++.||+...++..++.....+. + ....++.|+||||-+-+... .+....+.++.. .....++.....||.+.
T Consensus 82 ~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 159 (198)
T cd01470 82 KTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGG--SPLPTVDKIKNLVYKNNKSDNPREDYLDVYV 159 (198)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCC--ChhHHHHHHHHHHhcccccccchhcceeEEE
Confidence 5789999998776654321111 1 13457889999999866431 223334444433 22222333344444333
Q ss_pred ----ccCCHHHHHHHHcC
Q 043578 600 ----SGFSKNMLTLFLDN 613 (639)
Q Consensus 600 ----SGfS~~llK~fLe~ 613 (639)
+++.+..|+-+=+.
T Consensus 160 iGvG~~~~~~~L~~iA~~ 177 (198)
T cd01470 160 FGVGDDVNKEELNDLASK 177 (198)
T ss_pred EecCcccCHHHHHHHhcC
Confidence 34566677666653
No 12
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.99 E-value=7.2e-05 Score=71.82 Aligned_cols=145 Identities=20% Similarity=0.233 Sum_probs=90.8
Q ss_pred ceEEEEcCCCCCCCChhHHH-HHHHHHHhhcccCCC-----CCeEEeeCCCCceeecCCCCHHHHHHHHHhCCCCCCccH
Q 043578 458 NCMAICDVSGSMHGTPMEVS-VALGVLVSELSEEPW-----KGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDF 531 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~va-iaLgLl~aE~~~~pf-----~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~ 531 (639)
+.+.|+|+||||.|.+++-+ -++-.++..+...+. +=.+|+|+++.+.+. +-..+.+. .+.....++.||+
T Consensus 5 ~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~-~l~~~~~~--~~~~l~~~GgT~l 81 (176)
T cd01464 5 PIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIV-PLTPLESF--QPPRLTASGGTSM 81 (176)
T ss_pred CEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEec-CCccHHhc--CCCcccCCCCCcH
Confidence 56789999999999887654 456667777766554 346999999987542 21222211 1334456788999
Q ss_pred HHHHHHHHHHHHhCC-----CCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEeccCCHHH
Q 043578 532 QKVFDLILQVAVNGN-----LKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNM 606 (639)
Q Consensus 532 ~aVFdlIL~~Av~~~-----l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVSGfS~~l 606 (639)
...+...++...... -.+...++.|+++||-+-. +.|.+..+.++......++|. .+++=+++....
T Consensus 82 ~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~----~~~~~~~~~~~~~~~~~~~i~----~igiG~~~~~~~ 153 (176)
T cd01464 82 GAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPT----DDLTAAIERIKEARDSKGRIV----ACAVGPKADLDT 153 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCC----chHHHHHHHHHhhcccCCcEE----EEEeccccCHHH
Confidence 999987776654321 1234567899999998732 224444455554432233433 233333577888
Q ss_pred HHHHHcC
Q 043578 607 LTLFLDN 613 (639)
Q Consensus 607 lK~fLe~ 613 (639)
|+.+-++
T Consensus 154 L~~ia~~ 160 (176)
T cd01464 154 LKQITEG 160 (176)
T ss_pred HHHHHCC
Confidence 8888765
No 13
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.89 E-value=0.00017 Score=66.04 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=78.8
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccC--CCCCeEEeeCCCCcee-ecC-CCCHHHHHHHHHhCCCC--CCcc
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEE--PWKGKLITFSENPELQ-VLE-GDSLRSRTDFVTEMEWG--MNTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~--pf~~~fITFS~~P~l~-~i~-g~~L~ekv~~i~~~~wg--~nTn 530 (639)
|++.|+|+||||.+..++.+.. +.-++..+... --+-.+|+|++++... ... ..+..+-.+.+....+. ..||
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~ 81 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGGGGTN 81 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCCCHHHHHHHHHhcccCCCCCcc
Confidence 5678999999999877776665 67777777754 3445689999988754 333 33566666777766553 3799
Q ss_pred HHHHHHHHHHHHHhCCCCcccccceEEEEecCCccc
Q 043578 531 FQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~ 566 (639)
+..++....+...+..-...+-.+.+++|||-+-+.
T Consensus 82 ~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~ 117 (161)
T cd01450 82 TGKALQYALEQLFSESNARENVPKVIIVLTDGRSDD 117 (161)
T ss_pred HHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCC
Confidence 999998877777655333446678999999997554
No 14
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=97.83 E-value=0.0002 Score=66.40 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=74.0
Q ss_pred ceEEEEcCCCCCCCChhHHHHHH-HHHHhhcccC--CCCCeEEeeCCCCceeecC--CCCHHHHHHHHHhCC--CCCCcc
Q 043578 458 NCMAICDVSGSMHGTPMEVSVAL-GVLVSELSEE--PWKGKLITFSENPELQVLE--GDSLRSRTDFVTEME--WGMNTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaL-gLl~aE~~~~--pf~~~fITFS~~P~l~~i~--g~~L~ekv~~i~~~~--wg~nTn 530 (639)
+.+.|+|+||||.+.+++.+.+. .-++.++... -.+=.+|+|++......-- ..+..+-...+.... ++..|+
T Consensus 3 ~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (177)
T smart00327 3 DVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEALASLSYKLGGGTN 82 (177)
T ss_pred cEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEcccccCCHHHHHHHHHhcCCCCCCCch
Confidence 56789999999998888888774 5555555544 5566789999977644332 456666666677777 588999
Q ss_pred HHHHHHHHHHHHHhCCC-CcccccceEEEEecCC
Q 043578 531 FQKVFDLILQVAVNGNL-KPEQMIKRLFVFSDME 563 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l-~~e~M~k~lfVfSDMe 563 (639)
+..++...+....+..- ....=.+.|+||||-+
T Consensus 83 ~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~ 116 (177)
T smart00327 83 LGAALQYALENLFSKSAGSRRGAPKVLILITDGE 116 (177)
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCC
Confidence 99999887777642111 1111267899999965
No 15
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.83 E-value=0.00017 Score=69.63 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=70.0
Q ss_pred EEEEcCCCCCCCC-hhHHHHHHHHHHhhcc-cCCCCCeEEeeCCC-CceeecCCCCHHHHHHHHHhCCCCCCccHHHHHH
Q 043578 460 MAICDVSGSMHGT-PMEVSVALGVLVSELS-EEPWKGKLITFSEN-PELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFD 536 (639)
Q Consensus 460 iav~DvSGSM~g~-Pm~vaiaLgLl~aE~~-~~pf~~~fITFS~~-P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~aVFd 536 (639)
+.|+|+||||.+. .++.+......+.... .+--+=.+|+|+++ ++++.-...+..+-.+.+....-++.|++.....
T Consensus 4 ~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T~l~~aL~ 83 (178)
T cd01451 4 IFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGTPLAAGLL 83 (178)
T ss_pred EEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCCcHHHHHH
Confidence 5689999999975 7887776655444322 22123357999976 4433222345555556777888899999999998
Q ss_pred HHHHHHHhCCCCcccccceEEEEecCCccc
Q 043578 537 LILQVAVNGNLKPEQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 537 lIL~~Av~~~l~~e~M~k~lfVfSDMeFD~ 566 (639)
..++... ...+...-.+.|||+||.+-++
T Consensus 84 ~a~~~l~-~~~~~~~~~~~ivliTDG~~~~ 112 (178)
T cd01451 84 AAYELAA-EQARDPGQRPLIVVITDGRANV 112 (178)
T ss_pred HHHHHHH-HHhcCCCCceEEEEECCCCCCC
Confidence 7777652 2222223478999999997554
No 16
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.80 E-value=0.00016 Score=71.21 Aligned_cols=106 Identities=15% Similarity=0.032 Sum_probs=71.1
Q ss_pred CCcceEEEEcCCCCCC------CChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCc--------------eeecCCC---
Q 043578 455 KLRNCMAICDVSGSMH------GTPMEVSVALGVLVSELSEEPWKGKLITFSENPE--------------LQVLEGD--- 511 (639)
Q Consensus 455 ~l~n~iav~DvSGSM~------g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~--------------l~~i~g~--- 511 (639)
.-.|.+.|+|+||||. +..|+.+.....-+.+.-.+.-+=.+++|+++.. ...+.+.
T Consensus 19 ~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 98 (206)
T cd01456 19 LPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPSA 98 (206)
T ss_pred CCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCCcc
Confidence 3468999999999998 4678877665555555443444557999999531 1222232
Q ss_pred CHHHHHHHHHhCC-CCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCccc
Q 043578 512 SLRSRTDFVTEME-WGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 512 ~L~ekv~~i~~~~-wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~ 566 (639)
+...-.+.+.... +++.|++.......++... ..-++.|+++||-+-+.
T Consensus 99 ~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~------~~~~~~iillTDG~~~~ 148 (206)
T cd01456 99 QRSALDAALNSLQTPTGWTPLAAALAEAAAYVD------PGRVNVVVLITDGEDTC 148 (206)
T ss_pred cHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC------CCCcceEEEEcCCCccC
Confidence 3333344566666 8899999999887665542 12358899999998553
No 17
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.68 E-value=0.00035 Score=66.35 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCC--CCCeEEeeCCCCceee-cC-CCCHHHHHHHHHhCC-CCCCccH
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEP--WKGKLITFSENPELQV-LE-GDSLRSRTDFVTEME-WGMNTDF 531 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~p--f~~~fITFS~~P~l~~-i~-g~~L~ekv~~i~~~~-wg~nTn~ 531 (639)
+.+.|+|.||||.+..+.-+.. +.-++..+.-+| -+=.+|+||+.|+.+. +. ..+..+-.+.+.++. .|++||+
T Consensus 2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~~~~~l~~~l~~~~~~~g~T~~ 81 (164)
T cd01482 2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTRT 81 (164)
T ss_pred CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCCCHHHHHHHHHhCcCCCCCChH
Confidence 5678999999999766665554 334444444333 3447899999998543 22 356666666666766 4889999
Q ss_pred HHHHHHHHHHHHh--CCCCcccccceEEEEecCCcc
Q 043578 532 QKVFDLILQVAVN--GNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 532 ~aVFdlIL~~Av~--~~l~~e~M~k~lfVfSDMeFD 565 (639)
...++..++.... .+ ...+.+|.|+||||-+.+
T Consensus 82 ~~aL~~a~~~~~~~~~~-~r~~~~k~iillTDG~~~ 116 (164)
T cd01482 82 GKALTHVREKNFTPDAG-ARPGVPKVVILITDGKSQ 116 (164)
T ss_pred HHHHHHHHHHhcccccC-CCCCCCEEEEEEcCCCCC
Confidence 9999876654322 12 234689999999998753
No 18
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.66 E-value=0.00043 Score=67.13 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=66.9
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCC---CHHHHHHHHHhCCCCCCccHHHH
Q 043578 458 NCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGD---SLRSRTDFVTEMEWGMNTDFQKV 534 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~---~L~ekv~~i~~~~wg~nTn~~aV 534 (639)
|.+.|.|+||||.+......-.+--++..+..+--+=.+||||++++.+.=-.. .+...++.+....-++.|++...
T Consensus 6 Dvv~llD~SgSm~~~~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~l~~~~~~g~T~~~~a 85 (185)
T cd01474 6 DLYFVLDKSGSVAANWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPSGQTYIHEG 85 (185)
T ss_pred eEEEEEeCcCchhhhHHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccccHHHHHHHHHHHhccCCCCCCcHHHH
Confidence 678899999999985544432222233444444456679999999985432221 23334444666656788999999
Q ss_pred HHHHHHHHHhCCCCcccccceEEEEecCCc
Q 043578 535 FDLILQVAVNGNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 535 FdlIL~~Av~~~l~~e~M~k~lfVfSDMeF 564 (639)
++..++..-+..-....-.+.|+++||-+=
T Consensus 86 L~~a~~~l~~~~~~~r~~~~~villTDG~~ 115 (185)
T cd01474 86 LENANEQIFNRNGGGRETVSVIIALTDGQL 115 (185)
T ss_pred HHHHHHHHHhhccCCCCCCeEEEEEcCCCc
Confidence 987766553221111111388999999984
No 19
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.66 E-value=0.00041 Score=65.54 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=70.8
Q ss_pred ceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCC--CCCeEEeeCCCCceeec-C-CCCHHHHHHHHHhCCC-CCCccH
Q 043578 458 NCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEP--WKGKLITFSENPELQVL-E-GDSLRSRTDFVTEMEW-GMNTDF 531 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~p--f~~~fITFS~~P~l~~i-~-g~~L~ekv~~i~~~~w-g~nTn~ 531 (639)
|.+.|.|+||||.+..++.+. ++.-++..+...+ -+=.+|+|+++++...- . ..+..+-.+.+..+.+ |..||+
T Consensus 2 Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~T~~ 81 (164)
T cd01472 2 DIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTNT 81 (164)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCCHHHHHHHHHhCcCCCCCchH
Confidence 578899999999986666554 3555556665333 23467999999986533 2 2454444455556665 788999
Q ss_pred HHHHHHHHHHHHhC--CCCcccccceEEEEecCC
Q 043578 532 QKVFDLILQVAVNG--NLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 532 ~aVFdlIL~~Av~~--~l~~e~M~k~lfVfSDMe 563 (639)
..++....+.-... . ....-++.++|+||-+
T Consensus 82 ~~al~~a~~~l~~~~~~-~~~~~~~~iiliTDG~ 114 (164)
T cd01472 82 GKALKYVRENLFTEASG-SREGVPKVLVVITDGK 114 (164)
T ss_pred HHHHHHHHHHhCCcccC-CCCCCCEEEEEEcCCC
Confidence 99998776654432 2 2234588899999984
No 20
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.61 E-value=0.00057 Score=65.41 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=71.2
Q ss_pred eEEEEcCCCCCCC-ChhHHHHHHHHHHhhcccC-CCCCeEEeeCCCC------ceeec-CCC-CHH-HHHHHHHhCCCCC
Q 043578 459 CMAICDVSGSMHG-TPMEVSVALGVLVSELSEE-PWKGKLITFSENP------ELQVL-EGD-SLR-SRTDFVTEMEWGM 527 (639)
Q Consensus 459 ~iav~DvSGSM~g-~Pm~vaiaLgLl~aE~~~~-pf~~~fITFS~~P------~l~~i-~g~-~L~-ekv~~i~~~~wg~ 527 (639)
++.++|+||||.+ ..++.|-.....+++.... --+=.+++|+++. .+... +.. .+. +-.+.+..+.-++
T Consensus 3 v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 82 (174)
T cd01454 3 VTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPGG 82 (174)
T ss_pred EEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCCC
Confidence 5678999999998 5888887777776665443 2344789999983 23332 222 222 2233455666788
Q ss_pred CccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 528 NTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 528 nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
.|++.......++.-.+. .+-.+.||||||.+-+..
T Consensus 83 ~T~~~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~~ 118 (174)
T cd01454 83 NTRDGAAIRHAAERLLAR----PEKRKILLVISDGEPNDL 118 (174)
T ss_pred CCcHHHHHHHHHHHHhcC----CCcCcEEEEEeCCCcCcc
Confidence 999999997776665432 234788999999987643
No 21
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.61 E-value=0.00026 Score=81.09 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=92.3
Q ss_pred cceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCCeEEeeCCCCcee-----ecCCCCHHHHHHHHHhCCCCCCcc
Q 043578 457 RNCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKGKLITFSENPELQ-----VLEGDSLRSRTDFVTEMEWGMNTD 530 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~~fITFS~~P~l~-----~i~g~~L~ekv~~i~~~~wg~nTn 530 (639)
.|.+.|+|+||||.|.+|+.+- +|.+++..+..+- +=.+|+|++..... .....++.+-.+++..+..++.||
T Consensus 272 ~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d-~~~ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~ 350 (596)
T TIGR03788 272 RELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGD-RFNIIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGTE 350 (596)
T ss_pred ceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCC-EEEEEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCCCcc
Confidence 4789999999999998887554 4445566665432 33689999988743 223456777777888888888999
Q ss_pred HHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEeccCCHHHHHHH
Q 043578 531 FQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLF 610 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVSGfS~~llK~f 610 (639)
+....+..++.. .-..+..++.|+++||-+... -..-++.++.. ....++. -+.+=++.+..+|+.+
T Consensus 351 l~~aL~~a~~~~---~~~~~~~~~~iillTDG~~~~-----~~~~~~~~~~~-~~~~ri~----tvGiG~~~n~~lL~~l 417 (596)
T TIGR03788 351 MAGALSAALRDD---GPESSGALRQVVFLTDGAVGN-----EDALFQLIRTK-LGDSRLF----TVGIGSAPNSYFMRKA 417 (596)
T ss_pred HHHHHHHHHHhh---cccCCCceeEEEEEeCCCCCC-----HHHHHHHHHHh-cCCceEE----EEEeCCCcCHHHHHHH
Confidence 999988777652 222345688999999987421 01233444332 2223332 1344455677888877
Q ss_pred Hc
Q 043578 611 LD 612 (639)
Q Consensus 611 Le 612 (639)
-+
T Consensus 418 A~ 419 (596)
T TIGR03788 418 AQ 419 (596)
T ss_pred HH
Confidence 65
No 22
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.60 E-value=0.00052 Score=66.79 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHH-HHhhcc--------cCCCCCeEEeeCCCCceeec-C--CCCHHHHHHHHHhCCC
Q 043578 458 NCMAICDVSGSMHGTPMEVSVALGV-LVSELS--------EEPWKGKLITFSENPELQVL-E--GDSLRSRTDFVTEMEW 525 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaLgL-l~aE~~--------~~pf~~~fITFS~~P~l~~i-~--g~~L~ekv~~i~~~~w 525 (639)
+.+.|.|+||||.+.+++.+..... ++..+. .+-.+=.+|+||+.|+++.- . ..+..+-.+.|.+..+
T Consensus 4 dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~~~~~~~l~~~i~~l~~ 83 (186)
T cd01480 4 DITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAVDNLEY 83 (186)
T ss_pred eEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccccCCHHHHHHHHHhCcc
Confidence 5678999999999888887664332 223332 22255689999999986543 3 2566666666777765
Q ss_pred -CCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCC
Q 043578 526 -GMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 526 -g~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMe 563 (639)
|+.|++...+....+....+ ....-++.|+++||-+
T Consensus 84 ~gg~T~~~~AL~~a~~~l~~~--~~~~~~~~iillTDG~ 120 (186)
T cd01480 84 IGGGTFTDCALKYATEQLLEG--SHQKENKFLLVITDGH 120 (186)
T ss_pred CCCCccHHHHHHHHHHHHhcc--CCCCCceEEEEEeCCC
Confidence 78899999987776665542 2345789999999986
No 23
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=97.56 E-value=0.00077 Score=64.99 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=97.1
Q ss_pred ceEEEEcCCCCCCCCh-hHHHHH-HHHHHhhcccCCCCC--eEEeeCCCCcee-ecCC---CC---HHHHHHHHHhCCC-
Q 043578 458 NCMAICDVSGSMHGTP-MEVSVA-LGVLVSELSEEPWKG--KLITFSENPELQ-VLEG---DS---LRSRTDFVTEMEW- 525 (639)
Q Consensus 458 n~iav~DvSGSM~g~P-m~vaia-LgLl~aE~~~~pf~~--~fITFS~~P~l~-~i~g---~~---L~ekv~~i~~~~w- 525 (639)
+.+.|.|+||||.+.. ++.+.. +.-++..+.-.|-.. .+|+|++.++.+ .+.. .+ +.+.++.+..+..
T Consensus 2 Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~ 81 (186)
T cd01471 2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYYP 81 (186)
T ss_pred cEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcCC
Confidence 4567999999999877 665544 556666665444333 479999999854 3432 12 2224555555432
Q ss_pred CCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEeccCCHH
Q 043578 526 GMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKN 605 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVSGfS~~ 605 (639)
++.||+..+++...+.-.+.+-...+-++.|+|+||-+=+.. ....+.+++-....+.|. - +++=+|....
T Consensus 82 ~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~-----~~~~~~a~~l~~~gv~v~--~--igiG~~~d~~ 152 (186)
T cd01471 82 NGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSK-----FRTLKEARKLRERGVIIA--V--LGVGQGVNHE 152 (186)
T ss_pred CCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCC-----cchhHHHHHHHHCCCEEE--E--EEeehhhCHH
Confidence 557999999987766655423344567899999999973321 112233332222212111 1 3444678888
Q ss_pred HHHHHHcCCC--------CCCHHHHHHHhhcc
Q 043578 606 MLTLFLDNEG--------VINPEQVMEAAISG 629 (639)
Q Consensus 606 llK~fLe~~g--------~~~P~~vm~~aI~~ 629 (639)
.|+.+-.+.. ...|++-+..+|++
T Consensus 153 ~l~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T cd01471 153 ENRSLVGCDPDDSPCPLYLQSSWSEVQNVIKP 184 (186)
T ss_pred HHHHhcCCCCCCCCCCeeecCCHHHHHHHhhc
Confidence 8888877531 13466666666543
No 24
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.48 E-value=0.00085 Score=63.45 Aligned_cols=104 Identities=24% Similarity=0.332 Sum_probs=69.3
Q ss_pred ceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCCeEEeeCCCCceee-cC--CC-CHHHHHHHHHhCCCCCCccHH
Q 043578 458 NCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKGKLITFSENPELQV-LE--GD-SLRSRTDFVTEMEWGMNTDFQ 532 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~~fITFS~~P~l~~-i~--g~-~L~ekv~~i~~~~wg~nTn~~ 532 (639)
+++.|.|+||||.+..++.+- ++..++.++.... +=.+|+|++.+.... +. .. +...-.+.+....-++.|++.
T Consensus 2 ~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~-~~~li~F~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~ 80 (155)
T cd01466 2 DLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDAD-RLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVVDGLQAGGGTNVV 80 (155)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcc-eEEEEEecCCccccCCCcccCHHHHHHHHHHHHhccCCCCccHH
Confidence 567899999999987666544 4666666666543 356899999877432 21 11 112223345566668899999
Q ss_pred HHHHHHHHHHHhCCCCcccccceEEEEecCCc
Q 043578 533 KVFDLILQVAVNGNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 533 aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeF 564 (639)
..+....+..... .+...++.|+|+||-+=
T Consensus 81 ~al~~a~~~~~~~--~~~~~~~~iillTDG~~ 110 (155)
T cd01466 81 GGLKKALKVLGDR--RQKNPVASIMLLSDGQD 110 (155)
T ss_pred HHHHHHHHHHhhc--ccCCCceEEEEEcCCCC
Confidence 9998777665332 23346789999999863
No 25
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.36 E-value=0.0023 Score=60.02 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCC--eEEeeCCCCcee-e--cC-CCCHHHHHHHHHhCCC-CCCcc
Q 043578 458 NCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKG--KLITFSENPELQ-V--LE-GDSLRSRTDFVTEMEW-GMNTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~--~fITFS~~P~l~-~--i~-g~~L~ekv~~i~~~~w-g~nTn 530 (639)
|.+.|.|+||||.+.--..--.+.-++..+...|-.. .+|+|++.++-+ . +. ..+..+-.+.+..... |+.|+
T Consensus 2 dv~~llD~S~Sm~~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~gg~T~ 81 (163)
T cd01476 2 DLLFVLDSSGSVRGKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFIGGTTA 81 (163)
T ss_pred CEEEEEeCCcchhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccCCCCcc
Confidence 4678999999998732112222333455555444344 579999964432 2 22 3344444455555554 77899
Q ss_pred HHHHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 531 FQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
+..+.....+...+..-.+.+.++.++|+||=..+
T Consensus 82 l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~ 116 (163)
T cd01476 82 TGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSH 116 (163)
T ss_pred HHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCC
Confidence 99999877766543323334567999999997543
No 26
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.24 E-value=0.0012 Score=60.85 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=62.9
Q ss_pred ceEEEEcCCCCCCCC-----hhHHHH-HHHHHHhhcccCCCCCeEEeeCCCCceee-cC--CCCHHHHHHHHH-hCCCCC
Q 043578 458 NCMAICDVSGSMHGT-----PMEVSV-ALGVLVSELSEEPWKGKLITFSENPELQV-LE--GDSLRSRTDFVT-EMEWGM 527 (639)
Q Consensus 458 n~iav~DvSGSM~g~-----Pm~vai-aLgLl~aE~~~~pf~~~fITFS~~P~l~~-i~--g~~L~ekv~~i~-~~~wg~ 527 (639)
|.+.|.|+||||.+. -++.+. +|.-++.++. +- +=.+++|++++.+.. +. -..+.+.++.+. ...++.
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~l~~f~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~ 78 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GD-RVGLVSFSDSSRTLSPLTSDKDELKNALNKLSPQGMPGG 78 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TS-EEEEEEESTSCEEEEEEESSHHHHHHHHHTHHHHG--SS
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CC-EEEEEEecccccccccccccHHHHHHHhhcccccccCcc
Confidence 568899999999975 344443 4555666642 12 337899999987432 22 234555665554 345689
Q ss_pred CccHHHHHHHHHHHHHhCCCCcccccceEEEEecCC
Q 043578 528 NTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 528 nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMe 563 (639)
+|++.......++.....+ .=.+.|+||||-+
T Consensus 79 ~t~~~~al~~a~~~~~~~~----~~~~~iv~iTDG~ 110 (172)
T PF13519_consen 79 GTNLYDALQEAAKMLASSD----NRRRAIVLITDGE 110 (172)
T ss_dssp S--HHHHHHHHHHHHHC-S----SEEEEEEEEES-T
T ss_pred CCcHHHHHHHHHHHHHhCC----CCceEEEEecCCC
Confidence 9999999988877776554 3467899999964
No 27
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.22 E-value=0.00077 Score=62.81 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=57.4
Q ss_pred EEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeec-CCCCHHHHHHHHHhCCCCCCccHHHHHHHH
Q 043578 460 MAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVL-EGDSLRSRTDFVTEMEWGMNTDFQKVFDLI 538 (639)
Q Consensus 460 iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i-~g~~L~ekv~~i~~~~wg~nTn~~aVFdlI 538 (639)
.+++|+||||+..-+.-.++--.-+.+. -+.+=++|.|...=+-+.. .. +.+.+..+ +..=|+.|||+.||+.+
T Consensus 2 ~vaiDtSGSis~~~l~~fl~ev~~i~~~--~~~~v~vi~~D~~v~~~~~~~~--~~~~~~~~-~~~GgGGTdf~pvf~~~ 76 (126)
T PF09967_consen 2 VVAIDTSGSISDEELRRFLSEVAGILRR--FPAEVHVIQFDAEVQDVQVFRS--LEDELRDI-KLKGGGGTDFRPVFEYL 76 (126)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEECCEeeeeeEEec--cccccccc-ccCCCCCCcchHHHHHH
Confidence 4689999999875443333322222222 2667789999887664333 33 11112222 22336789999999988
Q ss_pred HHHHHhCCCCcccccceEEEEecCCccccc
Q 043578 539 LQVAVNGNLKPEQMIKRLFVFSDMEFDQAS 568 (639)
Q Consensus 539 L~~Av~~~l~~e~M~k~lfVfSDMeFD~a~ 568 (639)
.+. +. -+.-|++|||.+.....
T Consensus 77 ~~~----~~----~~~~vi~fTDg~~~~~~ 98 (126)
T PF09967_consen 77 EEN----RP----RPSVVIYFTDGEGWPPE 98 (126)
T ss_pred Hhc----CC----CCCEEEEEeCCCCCCCC
Confidence 643 21 13447789999986543
No 28
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=97.18 E-value=0.0037 Score=61.50 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=60.6
Q ss_pred cceEEEEcCCCCCCCCh-------hHHHHHHHHHHhhc-ccCCCCC-eEEeeCCCCceeecCCCCHHHHHHHHHhCCCCC
Q 043578 457 RNCMAICDVSGSMHGTP-------MEVSVALGVLVSEL-SEEPWKG-KLITFSENPELQVLEGDSLRSRTDFVTEMEWGM 527 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~P-------m~vaiaLgLl~aE~-~~~pf~~-~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~ 527 (639)
.+++.++|+||||...- ++.+.-+..-+++. ..-...| .++.|+..+... ..-+..+-.+.+.+..+++
T Consensus 3 ~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~--~~~~~~~v~~~~~~~~p~G 80 (199)
T cd01457 3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRY--DNVNSSKVDQLFAENSPDG 80 (199)
T ss_pred cCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc--CCcCHHHHHHHHhcCCCCC
Confidence 47899999999998531 33333333333332 2222223 368888876422 1223333334456676777
Q ss_pred CccHHHHHHHHHHH-HHh--C-CCCcccccceEEEEecCCccc
Q 043578 528 NTDFQKVFDLILQV-AVN--G-NLKPEQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 528 nTn~~aVFdlIL~~-Av~--~-~l~~e~M~k~lfVfSDMeFD~ 566 (639)
.||+..+....+.. +.. . .-+| =.+-|+||||.+.+.
T Consensus 81 ~T~l~~~l~~a~~~~~~~~~~~~~~p--~~~~vIiiTDG~~~d 121 (199)
T cd01457 81 GTNLAAVLQDALNNYFQRKENGATCP--EGETFLVITDGAPDD 121 (199)
T ss_pred cCcHHHHHHHHHHHHHHHHhhccCCC--CceEEEEEcCCCCCc
Confidence 89999998765532 221 1 1111 157899999999763
No 29
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.15 E-value=0.0033 Score=72.41 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=77.6
Q ss_pred CcceEEEEcCCCCCCCChhHHHHHHHHHHhh-cccCCCCCeEEeeCCCCceeecC-CCCHHHHHHHHHhCCCCCCccHHH
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVALGVLVSE-LSEEPWKGKLITFSENPELQVLE-GDSLRSRTDFVTEMEWGMNTDFQK 533 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE-~~~~pf~~~fITFS~~P~l~~i~-g~~L~ekv~~i~~~~wg~nTn~~a 533 (639)
...++.|+|.||||.+..|..+-.+...+.. .-..-=+=.+|+|+....-+.+. ..++..-.+.+..+..|+.|++..
T Consensus 407 ~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGgTpL~~ 486 (589)
T TIGR02031 407 GRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGGTPLAA 486 (589)
T ss_pred CceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCCCcHHH
Confidence 4458899999999998778776555433333 21111134689999776434444 346666667788999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 534 VFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 534 VFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
.+.+.++.+....-+ ...+.|+++||-+.+..
T Consensus 487 gL~~A~~~~~~~~~~--~~~~~ivllTDG~~nv~ 518 (589)
T TIGR02031 487 GLAAAFQTALQARSS--GGTPTIVLITDGRGNIP 518 (589)
T ss_pred HHHHHHHHHHHhccc--CCceEEEEECCCCCCCC
Confidence 999888887654322 46789999999988754
No 30
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.14 E-value=0.0027 Score=60.46 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=63.7
Q ss_pred ceEEEEcCCCCCCCC------hhHHHHHHHHHHhhcccCCCCCeEEeeCCCCcee-ecC-C-CCHHHHHHHHHhCCCCCC
Q 043578 458 NCMAICDVSGSMHGT------PMEVSVALGVLVSELSEEPWKGKLITFSENPELQ-VLE-G-DSLRSRTDFVTEMEWGMN 528 (639)
Q Consensus 458 n~iav~DvSGSM~g~------Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~-~i~-g-~~L~ekv~~i~~~~wg~n 528 (639)
|.+.|+|+||||.+. -++.+..+..-+.+.. +--+=.+|+|+..+..+ .+. + ..+.+.++.+....-+..
T Consensus 4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~ 82 (180)
T cd01467 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLTLDRESLKELLEDIKIGLAGQG 82 (180)
T ss_pred eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCCccHHHHHHHHHHhhhcccCCC
Confidence 678899999999752 2455554443333332 11123689999987643 222 2 245555666653333678
Q ss_pred ccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 529 TDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 529 Tn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
||+...+...++...+.. .-.+.|+|+||.+-+
T Consensus 83 T~l~~al~~a~~~l~~~~----~~~~~iiliTDG~~~ 115 (180)
T cd01467 83 TAIGDAIGLAIKRLKNSE----AKERVIVLLTDGENN 115 (180)
T ss_pred CcHHHHHHHHHHHHHhcC----CCCCEEEEEeCCCCC
Confidence 999888877776654432 224889999999743
No 31
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.09 E-value=0.0054 Score=71.21 Aligned_cols=119 Identities=19% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHhhcCCCcceEEEEcCCCCCCCC-hhHHHHHHHHHHhhcc-cCCCCCeEEeeCCCCceeecC-CCCHHHHHHHHHhCCC
Q 043578 449 DLMQKGKLRNCMAICDVSGSMHGT-PMEVSVALGVLVSELS-EEPWKGKLITFSENPELQVLE-GDSLRSRTDFVTEMEW 525 (639)
Q Consensus 449 ~l~~~G~l~n~iav~DvSGSM~g~-Pm~vaiaLgLl~aE~~-~~pf~~~fITFS~~P~l~~i~-g~~L~ekv~~i~~~~w 525 (639)
.+++..+-..++.|+|+||||.+. -|..+.+..+-+.... ..--+=.+|+|+.+..-+.+. ..+...-.+.+..+.-
T Consensus 458 ~~~~~r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~ 537 (633)
T TIGR02442 458 KIRAGRAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPT 537 (633)
T ss_pred HHhcCCCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCC
Confidence 344445556788999999999873 6666555443333221 121233679998654333444 3455444467788889
Q ss_pred CCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 526 GMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
|+.|+|...+.+.++.......+.....+.||||||-+-+..
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~ 579 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA 579 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC
Confidence 999999999988777766432222346788999999987653
No 32
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=96.96 E-value=0.0034 Score=58.62 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhc--ccCCCCCeEEeeCCCCce-eecC-CCCHHHHHHHH-HhCCC-CCCcc
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSEL--SEEPWKGKLITFSENPEL-QVLE-GDSLRSRTDFV-TEMEW-GMNTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~--~~~pf~~~fITFS~~P~l-~~i~-g~~L~ekv~~i-~~~~w-g~nTn 530 (639)
|.+.|+|+||||.+.-+..+.. +.-++..+ ..+-.+=.+|+|++.+.. +.+. ..+..+..+.+ ....+ ++.||
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~t~ 80 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAINDSIPSSGGGTN 80 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHHHTTGGCCBSSB-
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccccccccccchhhh
Confidence 4578999999999854444433 34444444 344455689999999983 3443 34666666766 45444 78999
Q ss_pred HHHHHHHHHHHHHhC--CCCcccccceEEEEecCCccc
Q 043578 531 FQKVFDLILQVAVNG--NLKPEQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~--~l~~e~M~k~lfVfSDMeFD~ 566 (639)
+..+++.+++.-... +..+ .-++-|+||||-....
T Consensus 81 ~~~aL~~a~~~l~~~~~~~r~-~~~~~iiliTDG~~~~ 117 (178)
T PF00092_consen 81 LGAALKFAREQLFSSNNGGRP-NSPKVIILITDGNSND 117 (178)
T ss_dssp HHHHHHHHHHHTTSGGGTTGT-TSEEEEEEEESSSSSS
T ss_pred HHHHHhhhhhccccccccccc-ccccceEEEEeecccC
Confidence 999998877775433 3334 6799999999977654
No 33
>PRK13685 hypothetical protein; Provisional
Probab=96.89 E-value=0.0092 Score=63.63 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=90.8
Q ss_pred CcceEEEEcCCCCCCC-----ChhHHHHHHHH-HHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCCCCCc
Q 043578 456 LRNCMAICDVSGSMHG-----TPMEVSVALGV-LVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNT 529 (639)
Q Consensus 456 l~n~iav~DvSGSM~g-----~Pm~vaiaLgL-l~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~nT 529 (639)
..+.+.|.|+||||.+ .-++.|..... ++.++..+ -+=.+|+|+.++.++.=...+...-...+.+.+.+..|
T Consensus 88 ~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~-d~vglv~Fa~~a~~~~p~t~d~~~l~~~l~~l~~~~~T 166 (326)
T PRK13685 88 RAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPG-INLGLIAFAGTATVLVSPTTNREATKNAIDKLQLADRT 166 (326)
T ss_pred CceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCC-CeEEEEEEcCceeecCCCCCCHHHHHHHHHhCCCCCCc
Confidence 4578899999999986 34666554444 34444322 23368999999875433344555566667788888999
Q ss_pred cHHHHHHHHHHHHHh--CCCCc--ccccceEEEEecCCcccccCC-CCchhHHHHHHhcCCCCCc-----cc-----CCC
Q 043578 530 DFQKVFDLILQVAVN--GNLKP--EQMIKRLFVFSDMEFDQASAN-PWETDYQVIVNKDSRSTPV-----LG-----TQK 594 (639)
Q Consensus 530 n~~aVFdlIL~~Av~--~~l~~--e~M~k~lfVfSDMeFD~a~~~-~w~T~ye~ik~k~s~~~PV-----t~-----~~~ 594 (639)
++......-++.+.+ +.+.+ +.-+++|+++||-+-+..... .-...++.++......++| .. +.+
T Consensus 167 ~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~ 246 (326)
T PRK13685 167 ATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEIN 246 (326)
T ss_pred chHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcC
Confidence 997766655555442 11221 223688999999875432110 0012344433321112221 11 224
Q ss_pred CeEEeccCCHHHHHHHHc
Q 043578 595 GVALVSGFSKNMLTLFLD 612 (639)
Q Consensus 595 GvaLVSGfS~~llK~fLe 612 (639)
|...++-.-+..|+-+-+
T Consensus 247 g~~~~~~~d~~~L~~iA~ 264 (326)
T PRK13685 247 GQRQPVPVDDESLKKIAQ 264 (326)
T ss_pred CceeeecCCHHHHHHHHH
Confidence 544556677788888776
No 34
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.79 E-value=0.01 Score=59.54 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCC--CCeEEeeCCCCceeec-C-CCCHHHHHHHHHhCC-CCCCccH
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPW--KGKLITFSENPELQVL-E-GDSLRSRTDFVTEME-WGMNTDF 531 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf--~~~fITFS~~P~l~~i-~-g~~L~ekv~~i~~~~-wg~nTn~ 531 (639)
+.+-|.|+||||.+..++-+.. +.-++..+.-+|- +=.+|+||++|+.+.- . ..+..+..+.+.++. ++..|+.
T Consensus 4 DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~~~~~~t~t 83 (224)
T cd01475 4 DLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETGTMT 83 (224)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHHHhCcCCCCCChH
Confidence 4677999999999888877766 4445666665553 4468999999986432 2 345555556666665 3678888
Q ss_pred HHHHHHHHHHHH--hCCCCcc--cccceEEEEecCC
Q 043578 532 QKVFDLILQVAV--NGNLKPE--QMIKRLFVFSDME 563 (639)
Q Consensus 532 ~aVFdlIL~~Av--~~~l~~e--~M~k~lfVfSDMe 563 (639)
.++++..+..+- ..+..++ +-+|-|+||||-.
T Consensus 84 g~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~ 119 (224)
T cd01475 84 GLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGR 119 (224)
T ss_pred HHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCC
Confidence 777765554432 1233332 3478889999985
No 35
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.78 E-value=0.012 Score=68.02 Aligned_cols=111 Identities=17% Similarity=0.122 Sum_probs=81.5
Q ss_pred CCcceEEEEcCCCCCCCChhHHHHHHHHH-HhhcccCCCCCeEEeeCCC-CceeecCCCCHHHHHHHHHhCCCCCCccHH
Q 043578 455 KLRNCMAICDVSGSMHGTPMEVSVALGVL-VSELSEEPWKGKLITFSEN-PELQVLEGDSLRSRTDFVTEMEWGMNTDFQ 532 (639)
Q Consensus 455 ~l~n~iav~DvSGSM~g~Pm~vaiaLgLl-~aE~~~~pf~~~fITFS~~-P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~ 532 (639)
.-.+.+.|+|+||||.+..|..+-+.... +.+.-.+-=+=.+|+|+.+ .+++.-...++..-.+.+..++-|+.|+|.
T Consensus 400 ~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGgTpL~ 479 (584)
T PRK13406 400 SETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGGTPLA 479 (584)
T ss_pred CCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCCChHH
Confidence 44677889999999988888887765433 3343222223468999876 554433456888888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 533 KVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 533 aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
..+.+-++.+....- ....+.|+++||-+.+..
T Consensus 480 ~gL~~A~~~l~~~~~--~~~~~~iVLlTDG~~n~~ 512 (584)
T PRK13406 480 AGLDAAAALALQVRR--KGMTPTVVLLTDGRANIA 512 (584)
T ss_pred HHHHHHHHHHHHhcc--CCCceEEEEEeCCCCCCC
Confidence 999888877765432 246789999999997754
No 36
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=96.67 E-value=0.014 Score=66.97 Aligned_cols=106 Identities=15% Similarity=0.039 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCCC-CChhHHH-HHHHHHHhhcccCCCCCe--EEeeCCCCcee-ecC-CC-----CHHHHHHHHHh-CCC
Q 043578 458 NCMAICDVSGSMH-GTPMEVS-VALGVLVSELSEEPWKGK--LITFSENPELQ-VLE-GD-----SLRSRTDFVTE-MEW 525 (639)
Q Consensus 458 n~iav~DvSGSM~-g~Pm~va-iaLgLl~aE~~~~pf~~~--fITFS~~P~l~-~i~-g~-----~L~ekv~~i~~-~~w 525 (639)
+.+.|+|+||||. +..++-+ -.+.-++.-+..++-.=+ +|+||+.++.+ .+. +. .+..+|..+.. ..-
T Consensus 44 DIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~~~p 123 (576)
T PTZ00441 44 DLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKTYLP 123 (576)
T ss_pred eEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhhccC
Confidence 6788999999996 3233323 233344444444443334 48999999844 443 33 35556665543 345
Q ss_pred CCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCc
Q 043578 526 GMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeF 564 (639)
++.|++.+++..+....... ...+.-++-||||||..-
T Consensus 124 gGgTnig~AL~~Aae~L~sr-~~R~nvpKVVILLTDG~s 161 (576)
T PTZ00441 124 YGKTNMTDALLEVRKHLNDR-VNRENAIQLVILMTDGIP 161 (576)
T ss_pred CCCccHHHHHHHHHHHHhhc-ccccCCceEEEEEecCCC
Confidence 67899999998877665432 245667899999999984
No 37
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=96.64 E-value=0.021 Score=55.34 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=72.0
Q ss_pred eEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCCCC--eEEeeCCCCceee-cC-CCCHHHHHHHHHhCC-CCCCccHH
Q 043578 459 CMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPWKG--KLITFSENPELQV-LE-GDSLRSRTDFVTEME-WGMNTDFQ 532 (639)
Q Consensus 459 ~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf~~--~fITFS~~P~l~~-i~-g~~L~ekv~~i~~~~-wg~nTn~~ 532 (639)
.+-|.|+||||.+..++-+.. +.-++..++-+|-.. .+|+||++|+.+. +. -.+..+-.+.+..+. .++.|++.
T Consensus 3 i~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~T~~~ 82 (177)
T cd01469 3 IVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTNTA 82 (177)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHHHHhCccCCCCccHH
Confidence 467999999999766666654 466667777767444 6799999998653 32 234455555565565 46679999
Q ss_pred HHHHHHHHHH--HhCCCCcccccceEEEEecCCc
Q 043578 533 KVFDLILQVA--VNGNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 533 aVFdlIL~~A--v~~~l~~e~M~k~lfVfSDMeF 564 (639)
.+.+..++.. .+++-.+ +-+|.++|+||-+=
T Consensus 83 ~AL~~a~~~l~~~~~g~R~-~~~kv~illTDG~~ 115 (177)
T cd01469 83 TAIQYVVTELFSESNGARK-DATKVLVVITDGES 115 (177)
T ss_pred HHHHHHHHHhcCcccCCCC-CCCeEEEEEeCCCC
Confidence 8887766553 2233233 56999999999773
No 38
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.42 E-value=0.025 Score=58.90 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=55.9
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHHHHhhc-ccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCC-----------
Q 043578 458 NCMAICDVSGSMHGTPMEVSVALGVLVSEL-SEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEW----------- 525 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~-~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~w----------- 525 (639)
+++.|+|+||||.+. +..+....+-+.+. -.+-=+=.+|+|+..+.+..=-..+...-.+.+.....
T Consensus 55 ~vvlvlD~SgSM~~~-~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t~~~~~l~~~l~~l~~~~~~~~~~~~~ 133 (296)
T TIGR03436 55 TVGLVIDTSGSMRND-LDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFTSDPRLLEAALNRLKPPLRTDYNSSGA 133 (296)
T ss_pred eEEEEEECCCCchHH-HHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCCCCHHHHHHHHHhccCCCccccccccc
Confidence 578899999999974 33333333333322 22222336899999887532112233333333444433
Q ss_pred ----CCCccHHHHHH-HHHHHHHhCCCCcccc--cceEEEEecCC
Q 043578 526 ----GMNTDFQKVFD-LILQVAVNGNLKPEQM--IKRLFVFSDME 563 (639)
Q Consensus 526 ----g~nTn~~aVFd-lIL~~Av~~~l~~e~M--~k~lfVfSDMe 563 (639)
++.|++..... ..++...+. +. .| .|.|++|||.+
T Consensus 134 ~~~~~g~T~l~~al~~aa~~~~~~~-~~--~~p~rk~iIllTDG~ 175 (296)
T TIGR03436 134 FVRDGGGTALYDAITLAALEQLANA-LA--GIPGRKALIVISDGG 175 (296)
T ss_pred cccCCCcchhHHHHHHHHHHHHHHh-hc--CCCCCeEEEEEecCC
Confidence 77899887742 233333221 11 11 36799999985
No 39
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=96.17 E-value=0.027 Score=56.95 Aligned_cols=101 Identities=22% Similarity=0.323 Sum_probs=71.0
Q ss_pred eEEEEcCCCCCCCC--------hhHHHHHHHHHHhhcccCCCCC--eEEeeCCCCc-eeecCCCCHHHHHHHHHhC--CC
Q 043578 459 CMAICDVSGSMHGT--------PMEVSVALGVLVSELSEEPWKG--KLITFSENPE-LQVLEGDSLRSRTDFVTEM--EW 525 (639)
Q Consensus 459 ~iav~DvSGSM~g~--------Pm~vaiaLgLl~aE~~~~pf~~--~fITFS~~P~-l~~i~g~~L~ekv~~i~~~--~w 525 (639)
...|.|.||||++. -.+=.++|+.- +-. .| .+.+||.++. +-.|.-.++..-|+.+..- +|
T Consensus 4 V~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~---~Dd---DG~i~v~~Fs~~~~~~~~vt~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 4 VYLVLDISGSMRPLYKDGTVQRVVERILALAAQ---FDD---DGEIDVWFFSTEFDRLPDVTLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred EEEEEeCCCCCchhhhCccHHHHHHHHHHHHhh---cCC---CCceEEEEeCCCCCcCCCcCHHHHHHHHHHHhcccccc
Confidence 35689999999852 33334455442 221 23 6889999877 5566666777777776442 33
Q ss_pred C--CCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 526 G--MNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 526 g--~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
+ +.||...|-+.|++.-.+.+ +...|--|++++|-+.+.-
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~--~~~~P~~VlFiTDG~~~~~ 119 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKRE--PSDAPALVLFITDGGPDDR 119 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcC--CCCCCeEEEEEecCCccch
Confidence 3 44999999999998888655 4567999999999987743
No 40
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.02 E-value=0.014 Score=63.62 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=70.6
Q ss_pred CcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCc--eeecCCCCHHHHHHHHHh--CCCCCCccH
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPE--LQVLEGDSLRSRTDFVTE--MEWGMNTDF 531 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~--l~~i~g~~L~ekv~~i~~--~~wg~nTn~ 531 (639)
-..-|++|||||||++ ...+=|.|+-| +.+.+.+.++.+|+..=. -+++.-.++.+-++.|.. -+|+|.|.+
T Consensus 218 ~~~lvvL~DVSGSm~~---ys~~~L~l~hA-l~q~~~R~~~F~F~TRLt~vT~~l~~rD~~~Al~~~~a~v~dw~ggTri 293 (395)
T COG3552 218 KPPLVVLCDVSGSMSG---YSRIFLHLLHA-LRQQRSRVHVFLFGTRLTRVTHMLRERDLEDALRRLSAQVKDWDGGTRI 293 (395)
T ss_pred CCCeEEEEecccchhh---hHHHHHHHHHH-HHhcccceeEEEeechHHHHHHHhccCCHHHHHHHHHhhcccccCCcch
Confidence 3457999999999997 22333444433 456677889999998643 233344578888888854 489999999
Q ss_pred HHHHHHHHHHHHhCCCCcccccceEEEEecC
Q 043578 532 QKVFDLILQVAVNGNLKPEQMIKRLFVFSDM 562 (639)
Q Consensus 532 ~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDM 562 (639)
-..|.-.+..=--+-|.+- ..|+|+||-
T Consensus 294 g~tl~aF~~~~~~~~L~~g---A~VlilsDg 321 (395)
T COG3552 294 GNTLAAFLRRWHGNVLSGG---AVVLILSDG 321 (395)
T ss_pred hHHHHHHHccccccccCCc---eEEEEEecc
Confidence 9999877766455555552 358999995
No 41
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=95.93 E-value=0.039 Score=66.19 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=65.7
Q ss_pred eEEEEcCCCCCCC-ChhHHH-HHHHHHHhhcccCCCCCeEEeeCCCCcee----ecCCCCHHHHHHHHHhCCCCCCccHH
Q 043578 459 CMAICDVSGSMHG-TPMEVS-VALGVLVSELSEEPWKGKLITFSENPELQ----VLEGDSLRSRTDFVTEMEWGMNTDFQ 532 (639)
Q Consensus 459 ~iav~DvSGSM~g-~Pm~va-iaLgLl~aE~~~~pf~~~fITFS~~P~l~----~i~g~~L~ekv~~i~~~~wg~nTn~~ 532 (639)
++.|.|+||||.| .+++.+ -|+..++.++-.+--.=.+|+|++++.+. .+...+-.+.+.......-++.|+|.
T Consensus 307 VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L~~~A~GGT~I~ 386 (863)
T TIGR00868 307 VCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANLPTAASGGTSIC 386 (863)
T ss_pred EEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhhccccCCCCcHH
Confidence 6678999999986 466654 34455555553332333689999998853 22322233333333333346789999
Q ss_pred HHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 533 KVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 533 aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
....+-++...+.. ...-.+.|+++||-+-+
T Consensus 387 ~GL~~Alq~L~~~~--~~~~~~~IILLTDGedn 417 (863)
T TIGR00868 387 SGLKAAFQVIKKSY--QSTDGSEIVLLTDGEDN 417 (863)
T ss_pred HHHHHHHHHHHhcc--cccCCCEEEEEeCCCCC
Confidence 99877666655433 12346899999998744
No 42
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=95.74 E-value=0.076 Score=52.57 Aligned_cols=108 Identities=15% Similarity=0.050 Sum_probs=69.4
Q ss_pred eEEEEcCCCCCCCC-hh-HHHHHHHHHHhhcccCCCCC--eEEeeCCCCcee-ecC---CC---CHHHHHHHHHhCCC-C
Q 043578 459 CMAICDVSGSMHGT-PM-EVSVALGVLVSELSEEPWKG--KLITFSENPELQ-VLE---GD---SLRSRTDFVTEMEW-G 526 (639)
Q Consensus 459 ~iav~DvSGSM~g~-Pm-~vaiaLgLl~aE~~~~pf~~--~fITFS~~P~l~-~i~---g~---~L~ekv~~i~~~~w-g 526 (639)
.+-++|.||||... .. .+---+--++..++-+|=+- .+|+||+.|+++ .+. .. .+...++.+...-+ |
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~ 82 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRSG 82 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCCC
Confidence 46789999999853 11 12113344577777666444 679999999854 222 12 34455655554334 7
Q ss_pred CCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCccc
Q 043578 527 MNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 527 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~ 566 (639)
+.||+..+.+..++.-....=..++-+|-++|++|-+-+.
T Consensus 83 g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~ 122 (192)
T cd01473 83 GETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTS 122 (192)
T ss_pred CcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCC
Confidence 8999998887776664433323345699999999988654
No 43
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=95.71 E-value=0.29 Score=51.37 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=100.7
Q ss_pred cceEEEEcCCCCCCCC-hhHHHHH--HHHHHhhcccCCCCCeEEeeC-CCCceeecCCCCHHHHHHHHHhCCCCCCccHH
Q 043578 457 RNCMAICDVSGSMHGT-PMEVSVA--LGVLVSELSEEPWKGKLITFS-ENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQ 532 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~-Pm~vaia--LgLl~aE~~~~pf~~~fITFS-~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~ 532 (639)
.-.|.|+|.||||.+. -|..|=+ ++||-.-... -=+=.+|+|. +..+++.=.-.++.+--+.+++++-|+-|.+-
T Consensus 79 ~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~-RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~TPL~ 157 (261)
T COG1240 79 NLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQR-RDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGKTPLA 157 (261)
T ss_pred CcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHc-cceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCCchH
Confidence 3468899999999985 5666544 4444332221 1123589999 66666655567899889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCC-CchhHHHHHHhcCCCC--CcccCCCCeEEeccCCHHHHHH
Q 043578 533 KVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANP-WETDYQVIVNKDSRST--PVLGTQKGVALVSGFSKNMLTL 609 (639)
Q Consensus 533 aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~-w~T~ye~ik~k~s~~~--PVt~~~~GvaLVSGfS~~llK~ 609 (639)
..+.+-.++....+-...+-.-.++|+||-+=+.....+ |....+...+-.-... -|...+.+- .--|+...|-..
T Consensus 158 ~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~-~~~g~~~~iA~~ 236 (261)
T COG1240 158 DALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE-VRLGLAEEIARA 236 (261)
T ss_pred HHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-ccccHHHHHHHH
Confidence 999887777777766555667789999999955554444 4444444444433333 333444443 556666666555
Q ss_pred H
Q 043578 610 F 610 (639)
Q Consensus 610 f 610 (639)
+
T Consensus 237 ~ 237 (261)
T COG1240 237 S 237 (261)
T ss_pred h
Confidence 4
No 44
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=95.59 E-value=0.13 Score=51.38 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCCCCChhHHH-HHHHHHHhhccc---C---CCCC--eEEeeCCCCceee-cC-CCCHHHHHHHHHh----
Q 043578 458 NCMAICDVSGSMHGTPMEVS-VALGVLVSELSE---E---PWKG--KLITFSENPELQV-LE-GDSLRSRTDFVTE---- 522 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~va-iaLgLl~aE~~~---~---pf~~--~fITFS~~P~l~~-i~-g~~L~ekv~~i~~---- 522 (639)
+.+-|.|+||||...=++-+ -.+.-++..+.- . |-.. .+|+||+.|+++. +. ..++.+..+.|..
T Consensus 21 DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~~~~~~ 100 (193)
T cd01477 21 DIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQGSLTD 100 (193)
T ss_pred eEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHHHHhhc
Confidence 45779999999974323322 123344455443 2 3334 6899999998653 33 4566777666663
Q ss_pred CCCCCCccHHHHHHHHHHHHHh--CCCCcccccceEEEEecCC
Q 043578 523 MEWGMNTDFQKVFDLILQVAVN--GNLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 523 ~~wg~nTn~~aVFdlIL~~Av~--~~l~~e~M~k~lfVfSDMe 563 (639)
..-++.||+.+...+.++.-.. ++- ....+|-|+|++|-+
T Consensus 101 ~~~~ggT~ig~aL~~A~~~l~~~~~~~-R~~v~kvvIllTDg~ 142 (193)
T cd01477 101 VSSTNASYLDTGLQAAEQMLAAGKRTS-RENYKKVVIVFASDY 142 (193)
T ss_pred cccCCcchHHHHHHHHHHHHHhhhccc-cCCCCeEEEEEecCc
Confidence 3334579999988765555432 222 245688899999754
No 45
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=94.57 E-value=0.1 Score=52.47 Aligned_cols=103 Identities=22% Similarity=0.390 Sum_probs=70.4
Q ss_pred ceEEEEcCCCCCCCChhHH-HHHHHHHHhhcccCCCCC-----eEEeeCCCCceeecCCCCHHHHHHHH-HhCCCCCCcc
Q 043578 458 NCMAICDVSGSMHGTPMEV-SVALGVLVSELSEEPWKG-----KLITFSENPELQVLEGDSLRSRTDFV-TEMEWGMNTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~v-aiaLgLl~aE~~~~pf~~-----~fITFS~~P~l~~i~g~~L~ekv~~i-~~~~wg~nTn 530 (639)
-|+-+.|+||||.|.|+++ =.+|-.++++|-+.|++= .+|||.+ |.-+.++ |.+-.+|- -...-++.|-
T Consensus 5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~-~a~~~~p---f~~~~nF~~p~L~a~GgT~ 80 (207)
T COG4245 5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGG-PARVIQP---FTDAANFNPPILTAQGGTP 80 (207)
T ss_pred CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecC-cceEEec---hhhHhhcCCCceecCCCCc
Confidence 3888999999999999876 578888999999999875 5799998 4433333 23333321 2223357899
Q ss_pred HHHHHHHHHHHHHhCCCC-----cccccceEEEEecCCc
Q 043578 531 FQKVFDLILQVAVNGNLK-----PEQMIKRLFVFSDMEF 564 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~-----~e~M~k~lfVfSDMeF 564 (639)
+-+.|.+.+++--+-+=+ .-+-=--+|++||-+=
T Consensus 81 lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~P 119 (207)
T COG4245 81 LGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEP 119 (207)
T ss_pred hHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCc
Confidence 999998888765433111 1222335899999763
No 46
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=93.82 E-value=0.85 Score=44.06 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCC--CCeEEeeCCCCceee-cC-CCCHHHHHHHHHhCCC-CC-Ccc
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPW--KGKLITFSENPELQV-LE-GDSLRSRTDFVTEMEW-GM-NTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf--~~~fITFS~~P~l~~-i~-g~~L~ekv~~i~~~~w-g~-nTn 530 (639)
+.+-+.|.||||...-++-... +.-++..++-+|= +=.+|+||+.|+.+- +. -.+..+-.+.+.++.+ |+ -||
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i~~~~g~~t~ 81 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRGGSQLN 81 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHHHHHHHHhcccCCCCccc
Confidence 4677999999998543333333 3334445554442 336899999998542 22 3455666666666665 34 378
Q ss_pred HHHHHHHHHHHH--HhCCCC-cccccceEEEEecCC
Q 043578 531 FQKVFDLILQVA--VNGNLK-PEQMIKRLFVFSDME 563 (639)
Q Consensus 531 ~~aVFdlIL~~A--v~~~l~-~e~M~k~lfVfSDMe 563 (639)
..++.+...+.. ..++-. .+..||.|+||||-+
T Consensus 82 t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~ 117 (165)
T cd01481 82 TGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGK 117 (165)
T ss_pred HHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCC
Confidence 888776554432 122322 257899999999976
No 47
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=93.42 E-value=0.75 Score=48.56 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred CcceEEEEcCCCCCCC-----ChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHH--HHHHHHHhCCCC-C
Q 043578 456 LRNCMAICDVSGSMHG-----TPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLR--SRTDFVTEMEWG-M 527 (639)
Q Consensus 456 l~n~iav~DvSGSM~g-----~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~--ekv~~i~~~~wg-~ 527 (639)
--+.+.+.|+|.||.- .+++.=..|+=.++.+..+.+ .++.|+++|.++.==+.+.. .-++.+.....+ .
T Consensus 60 ~~qIvlaID~S~SM~~~~~~~~aleak~lIs~al~~Le~g~v--gVv~Fg~~~~~v~Plt~d~~~~a~~~~l~~~~f~~~ 137 (266)
T cd01460 60 DYQILIAIDDSKSMSENNSKKLALESLCLVSKALTLLEVGQL--GVCSFGEDVQILHPFDEQFSSQSGPRILNQFTFQQD 137 (266)
T ss_pred CceEEEEEecchhcccccccccHHHHHHHHHHHHHhCcCCcE--EEEEeCCCceEeCCCCCCchhhHHHHHhCcccCCCC
Confidence 4467888999999963 345522222333444555444 69999999984432233433 344444443443 6
Q ss_pred CccHHHHHHHHHHHHHhCCCCccc--ccceEEEEecCC--cccc
Q 043578 528 NTDFQKVFDLILQVAVNGNLKPEQ--MIKRLFVFSDME--FDQA 567 (639)
Q Consensus 528 nTn~~aVFdlIL~~Av~~~l~~e~--M~k~lfVfSDMe--FD~a 567 (639)
+||+.+..+..+..-...+..+.. .-+-++|+||-+ |++.
T Consensus 138 ~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~ 181 (266)
T cd01460 138 KTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEG 181 (266)
T ss_pred CCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCcc
Confidence 799999998777665444322211 236789999999 7754
No 48
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=92.43 E-value=1.4 Score=43.37 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=60.4
Q ss_pred CCCcceEEEEcCCCCCCC-----ChhHHHHHHH-HHHhhc-ccCCCC-CeEEee-CCCCceeecCCCCHHHHHHHHHhC-
Q 043578 454 GKLRNCMAICDVSGSMHG-----TPMEVSVALG-VLVSEL-SEEPWK-GKLITF-SENPELQVLEGDSLRSRTDFVTEM- 523 (639)
Q Consensus 454 G~l~n~iav~DvSGSM~g-----~Pm~vaiaLg-Ll~aE~-~~~pf~-~~fITF-S~~P~l~~i~g~~L~ekv~~i~~~- 523 (639)
|=+.+.+.|.|+|+||.. +-++.|--.. -++..+ ...|-. =.+|+| +..|.++.=-..+...-+..+...
T Consensus 1 ~~~r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~ 80 (183)
T cd01453 1 GIMRHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTAR 80 (183)
T ss_pred CceeEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhccc
Confidence 346788999999999984 2455554333 333333 233433 368999 788865432222333333444332
Q ss_pred CCCCCccHHHHHHHHHHHHHhCCCCcccc-cc-eEEEEecCC
Q 043578 524 EWGMNTDFQKVFDLILQVAVNGNLKPEQM-IK-RLFVFSDME 563 (639)
Q Consensus 524 ~wg~nTn~~aVFdlIL~~Av~~~l~~e~M-~k-~lfVfSDMe 563 (639)
.-++.||+..+..+.+..-...+ .. .+ -|+|+||++
T Consensus 81 ~~~G~t~l~~aL~~A~~~l~~~~----~~~~~~iiil~sd~~ 118 (183)
T cd01453 81 ECSGEPSLQNGLEMALESLKHMP----SHGSREVLIIFSSLS 118 (183)
T ss_pred CCCCchhHHHHHHHHHHHHhcCC----ccCceEEEEEEcCCC
Confidence 44567999999887666554321 12 23 366677754
No 49
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=90.15 E-value=2.5 Score=42.33 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=59.8
Q ss_pred cceEEEEcCCCCCC----C---ChhHHHHHHHHHHhhc---ccCCCCCeEEeeCCCC-----cee---ec-C-CCCHHHH
Q 043578 457 RNCMAICDVSGSMH----G---TPMEVSVALGVLVSEL---SEEPWKGKLITFSENP-----ELQ---VL-E-GDSLRSR 516 (639)
Q Consensus 457 ~n~iav~DvSGSM~----g---~Pm~vaiaLgLl~aE~---~~~pf~~~fITFS~~P-----~l~---~i-~-g~~L~ek 516 (639)
+..+.+.|||.||. | .+++.|.....-+-+. +.+-=.=.+|.|+... .+. .+ + +..-.+.
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~ 81 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAER 81 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHH
Confidence 45688999999994 2 4555555443333321 1222233678888864 121 11 1 2222233
Q ss_pred HHHHHh---CC---------CCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 517 TDFVTE---ME---------WGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 517 v~~i~~---~~---------wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
++.+.. .. -+..|+|..++..-+++-.. ..+...-|+||+|||=+-.
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~--~~~~~~~k~IvL~TDg~~p 140 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSK--GKKKKSHKRIFLFTNNDDP 140 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHh--ccccccccEEEEECCCCCC
Confidence 333322 21 24579999999766665544 2333468999999996644
No 50
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.92 E-value=3 Score=51.82 Aligned_cols=91 Identities=11% Similarity=0.220 Sum_probs=61.0
Q ss_pred HHhhcCCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhc-ccCCCCCeEEeeCCCCceee-------cCC--CCHHHHHH
Q 043578 449 DLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSEL-SEEPWKGKLITFSENPELQV-------LEG--DSLRSRTD 518 (639)
Q Consensus 449 ~l~~~G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~-~~~pf~~~fITFS~~P~l~~-------i~g--~~L~ekv~ 518 (639)
+|....+-.+.+.+.|+||||+|..|++|-+.--.+=+. +..-|= .++||++.=..+. |.+ .++.+-.+
T Consensus 218 yi~aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfv-ni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~ 296 (1104)
T KOG2353|consen 218 YIQAATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFV-NILTFNSEVNPVSPCFNGTLVQATMRNKKVFKE 296 (1104)
T ss_pred cccccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeE-EEEeeccccCcccccccCceeecchHHHHHHHH
Confidence 444455677889999999999999999987765554443 343333 4789999877554 222 24555555
Q ss_pred HHHhCCCCCCccHHHHHHHHHH
Q 043578 519 FVTEMEWGMNTDFQKVFDLILQ 540 (639)
Q Consensus 519 ~i~~~~wg~nTn~~aVFdlIL~ 540 (639)
.+....--++||+.++|+.-++
T Consensus 297 ~i~~l~~k~~a~~~~~~e~aF~ 318 (1104)
T KOG2353|consen 297 AIETLDAKGIANYTAALEYAFS 318 (1104)
T ss_pred HHhhhccccccchhhhHHHHHH
Confidence 5566666678888877754333
No 51
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=85.36 E-value=8.3 Score=38.76 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=57.9
Q ss_pred CcceEEEEcCCCCCCC---Ch--hHHHH-HHHHHHhhcccCCC--CCeEEeeCC-CCceeecCCCCHHHHHHHHHhCCCC
Q 043578 456 LRNCMAICDVSGSMHG---TP--MEVSV-ALGVLVSELSEEPW--KGKLITFSE-NPELQVLEGDSLRSRTDFVTEMEWG 526 (639)
Q Consensus 456 l~n~iav~DvSGSM~g---~P--m~vai-aLgLl~aE~~~~pf--~~~fITFS~-~P~l~~i~g~~L~ekv~~i~~~~wg 526 (639)
++-++.+.|+|.||-- .| ++++. ++..++.|..+.-= +=.+|+|.. .|.+..=-..+...-...+...+-+
T Consensus 3 ~ea~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~~~ 82 (187)
T cd01452 3 LEATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQPK 82 (187)
T ss_pred ceEEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCCCC
Confidence 5678999999999963 34 45544 34444433322211 337999999 7775544455677777777888888
Q ss_pred CCccHHHHHHHHHHH
Q 043578 527 MNTDFQKVFDLILQV 541 (639)
Q Consensus 527 ~nTn~~aVFdlIL~~ 541 (639)
+.|||+...++-+..
T Consensus 83 g~~~l~~AL~~A~~~ 97 (187)
T cd01452 83 GKANFITGIQIAQLA 97 (187)
T ss_pred CcchHHHHHHHHHHH
Confidence 999999999765433
No 52
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.05 E-value=4.5 Score=43.94 Aligned_cols=90 Identities=28% Similarity=0.279 Sum_probs=54.0
Q ss_pred CcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCC-------CCC
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEW-------GMN 528 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~w-------g~n 528 (639)
|--+++++|.||||.---++.+|+=-.=|+ ..+| -++-.|..++..-..-.++.-.| |++
T Consensus 261 l~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il-----~~~~--------~eltli~~D~~v~~~~~~r~g~~~~~~~~ggG~ 327 (396)
T COG3864 261 LIKIVVAVDTSGSMTDAEIDAAMTEIFDIL-----KNKN--------YELTLIECDNIVRRMYRVRKGRDMKKKLDGGGG 327 (396)
T ss_pred hhheEEEEecCCCccHHHHHHHHHHHHHHH-----hCCC--------cEEEEEEecchhhhhhccCCcccCCcccCCCCC
Confidence 444678999999999766666554222111 1122 23444455554444444444333 678
Q ss_pred ccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 529 TDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 529 Tn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
|||+-||+.+=. -.|-.-+++|+|--=|+-
T Consensus 328 Tdf~Pvfeylek---------~~~~~~lIyfTDG~gd~p 357 (396)
T COG3864 328 TDFSPVFEYLEK---------NRMECFLIYFTDGMGDQP 357 (396)
T ss_pred ccccHHHHHHHh---------hcccceEEEEccCCCCcc
Confidence 999999997532 234467899999765543
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=83.33 E-value=1.4 Score=45.52 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=32.0
Q ss_pred EEEcCCCCCCCChhHHHHHHHHHHhhcc-cCCCCCeEEeeCCC
Q 043578 461 AICDVSGSMHGTPMEVSVALGVLVSELS-EEPWKGKLITFSEN 502 (639)
Q Consensus 461 av~DvSGSM~g~Pm~vaiaLgLl~aE~~-~~pf~~~fITFS~~ 502 (639)
.++|-||||.|.|+++|+..+.++++-- .--.+-.++-|+..
T Consensus 17 lLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~ 59 (219)
T PF11775_consen 17 LLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTR 59 (219)
T ss_pred EEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecC
Confidence 4789999999999999987777666643 33466677777766
No 54
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.63 E-value=12 Score=41.44 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=81.5
Q ss_pred eEEEEcCCCCCCC----Ch---hHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeec-CCCCHHHHHHHHHhCCCCCCcc
Q 043578 459 CMAICDVSGSMHG----TP---MEVSVALGVLVSELSEEPWKGKLITFSENPELQVL-EGDSLRSRTDFVTEMEWGMNTD 530 (639)
Q Consensus 459 ~iav~DvSGSM~g----~P---m~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i-~g~~L~ekv~~i~~~~wg~nTn 530 (639)
|+ ..||||||+. .| -++|.|+.|..-- |+ =.-+++.|+..-.-.-+ +..+|.+-..+|.+.+.|+ ||
T Consensus 431 ~l-aldvs~sm~~rv~~s~ln~reaaa~m~linlh-ne--ad~~~vaf~d~lte~pftkd~kigqv~~~~nni~~g~-td 505 (598)
T KOG4465|consen 431 CL-ALDVSASMNQRVLGSILNAREAAAAMCLINLH-NE--ADSRCVAFCDELTECPFTKDMKIGQVLDAMNNIDAGG-TD 505 (598)
T ss_pred EE-EEecchhhhhhhhccccchHHHHhhhheeeec-cc--cceeEEEeccccccCCCcccccHHHHHHHHhcCCCCC-Cc
Confidence 45 5699999984 34 4556666665422 21 23578899875432222 3568888888998888874 54
Q ss_pred HHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHh----------------cC-CCCCcccCC
Q 043578 531 FQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNK----------------DS-RSTPVLGTQ 593 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k----------------~s-~~~PVt~~~ 593 (639)
-. +=.--|.+||++.+- .+||+|-+=-... ---+++|+.- .+ +-.-...+.
T Consensus 506 cg----lpm~wa~ennlk~dv----fii~tdndt~age----ihp~~aik~yrea~~i~dakliv~amqa~d~siadp~d 573 (598)
T KOG4465|consen 506 CG----LPMIWAQENNLKADV----FIIFTDNDTFAGE----IHPAEAIKEYREAMDIHDAKLIVCAMQANDFSIADPDD 573 (598)
T ss_pred cC----CceeehhhcCCCccE----EEEEecCcccccc----cCHHHHHHHHHHhcCCCcceEEEEEeecCCceecCccc
Confidence 21 222348999998753 5678886522211 2446777654 11 112223556
Q ss_pred CCeEEeccCCHHHHHHH
Q 043578 594 KGVALVSGFSKNMLTLF 610 (639)
Q Consensus 594 ~GvaLVSGfS~~llK~f 610 (639)
.|.-=+.||--..+..+
T Consensus 574 agmldi~gfdsa~~~ii 590 (598)
T KOG4465|consen 574 AGMLDICGFDSAALDII 590 (598)
T ss_pred ccceeeccccchHHHHH
Confidence 77777888876666554
No 55
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=73.98 E-value=10 Score=42.76 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=69.8
Q ss_pred CcceEEEE--cCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEee---CCCCceeecCCCCHHHHHHHHHhCCCCCCcc
Q 043578 456 LRNCMAIC--DVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITF---SENPELQVLEGDSLRSRTDFVTEMEWGMNTD 530 (639)
Q Consensus 456 l~n~iav~--DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITF---S~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn 530 (639)
-.||+++| ||||||...--++|-..-+++--.-+.-|.+-=|.| +..- ..|+ | +..=...-++.|-
T Consensus 244 ~s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A--~EVd-----E--e~FF~~~esGGT~ 314 (421)
T PF04285_consen 244 ESNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEA--KEVD-----E--EEFFHSRESGGTR 314 (421)
T ss_pred cCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCce--EEec-----H--HHhcccCCCCCeE
Confidence 45776555 999999998888888888887777777787744444 3332 2222 3 2223445677899
Q ss_pred HHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHH
Q 043578 531 FQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVI 579 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~i 579 (639)
+..++++.+++-. ...++++-==-+|-|||- ++|.++=+..
T Consensus 315 vSSA~~l~~~ii~-erypp~~wNiY~~~~SDG-------DN~~~D~~~~ 355 (421)
T PF04285_consen 315 VSSAYELALEIIE-ERYPPSDWNIYVFHASDG-------DNWSSDNERC 355 (421)
T ss_pred ehHHHHHHHHHHH-hhCChhhceeeeEEcccC-------ccccCCCHHH
Confidence 9999999888654 455666654445556663 4677654443
No 56
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=73.55 E-value=2 Score=43.91 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=55.0
Q ss_pred CCChhhHHHHHHHHHhcCHHHHHHHHHHhhcC------CCCCCchhHHHHHHHHHHHhhChhhHHHhhHhhh--hcCCC
Q 043578 79 STPPQTLTGFLNASWAHNPLTTLKLICNLRGV------RGTGKSDKEGFYTAALWLHSLHPKTFACNVALFA--EFGYF 149 (639)
Q Consensus 79 ~t~~~~l~~ll~~AW~eDpl~tLKlif~lR~I------Rg~GKgeR~~Fy~a~~WL~~~HP~Tl~~NL~~l~--~~Gyw 149 (639)
++-...+...+.+++.+.=.+||| ||.|+| ..+|-||++-=.+|+.||...||.+-. -||. +||-|
T Consensus 42 Gtm~nkvv~~la~~l~~~G~atlR--fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp~s~~---~~l~GfSFGa~ 115 (210)
T COG2945 42 GTMNNKVVQTLARALVKRGFATLR--FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHPDSAS---CWLAGFSFGAY 115 (210)
T ss_pred CccCCHHHHHHHHHHHhCCceEEe--ecccccccccCcccCCcchHHHHHHHHHHHHhhCCCchh---hhhcccchHHH
Confidence 566678899999999999999987 899985 346999999999999999999999876 3444 67754
No 57
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=71.84 E-value=11 Score=44.03 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=30.7
Q ss_pred EEEcCCCCCCCChhHHHHHHHHHHhhccc-CCCCCeEEeeCCC
Q 043578 461 AICDVSGSMHGTPMEVSVALGVLVSELSE-EPWKGKLITFSEN 502 (639)
Q Consensus 461 av~DvSGSM~g~Pm~vaiaLgLl~aE~~~-~pf~~~fITFS~~ 502 (639)
.++|-||||.|.|..||..-+.++++--+ --..-.++-|++.
T Consensus 397 LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~ 439 (600)
T TIGR01651 397 LLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTR 439 (600)
T ss_pred EEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeeccc
Confidence 47899999999999988765666666433 3356677777764
No 58
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=65.54 E-value=3.9 Score=46.34 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.2
Q ss_pred EEEcCCCCCCCChhHHHHHHHHHHhh
Q 043578 461 AICDVSGSMHGTPMEVSVALGVLVSE 486 (639)
Q Consensus 461 av~DvSGSM~g~Pm~vaiaLgLl~aE 486 (639)
-|+|-||||.|+|+.||..-+-.+|-
T Consensus 418 lviDnSGSMrGRpItvAatcAdilAr 443 (620)
T COG4547 418 LVIDNSGSMRGRPITVAATCADILAR 443 (620)
T ss_pred eeeccCCCcCCcceehhHHHHHHHHH
Confidence 48999999999999999888888774
No 59
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=65.08 E-value=20 Score=40.67 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCcceEEEEcCCCCCC--C--Chh-HHHHHHHHHHhhcccCCCCC---eEEeeCCCCceeecCCCCHHHHHHHHHhCCCC
Q 043578 455 KLRNCMAICDVSGSMH--G--TPM-EVSVALGVLVSELSEEPWKG---KLITFSENPELQVLEGDSLRSRTDFVTEMEWG 526 (639)
Q Consensus 455 ~l~n~iav~DvSGSM~--g--~Pm-~vaiaLgLl~aE~~~~pf~~---~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg 526 (639)
+..-..+++|.|=||- | +|| .+|+||.-||+-. |.| +||+|...-+=+.|. ++..+... ..
T Consensus 462 t~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~Tr----frGD~l~~i~Fgr~A~~v~v~------eLt~l~~v-~e 530 (652)
T COG4867 462 TQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTR----FRGDALQIIAFGRYARTVTAA------ELTGLAGV-YE 530 (652)
T ss_pred cccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhc----CCCcceEEEeccchhcccCHH------HHhcCCCc-cc
Confidence 3444466789999994 5 576 6899999999865 566 799999988765542 11111111 22
Q ss_pred CCccHHHHHHHHHHH-HHhCCCCcccccceEEEEecCCc
Q 043578 527 MNTDFQKVFDLILQV-AVNGNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 527 ~nTn~~aVFdlIL~~-Av~~~l~~e~M~k~lfVfSDMeF 564 (639)
..||+.-..-+-=.. +..++ |-+.|+|++|-+=
T Consensus 531 qgTNlhhaL~LA~r~l~Rh~~-----~~~~il~vTDGeP 564 (652)
T COG4867 531 QGTNLHHALALAGRHLRRHAG-----AQPVVLVVTDGEP 564 (652)
T ss_pred cccchHHHHHHHHHHHHhCcc-----cCceEEEEeCCCc
Confidence 568887776443222 33444 6788999999864
No 60
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=60.80 E-value=32 Score=34.97 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=48.0
Q ss_pred eEEEEcCCCCCC------CCh---hHHHHHHHHHHhhcccCCCCCeEEeeCCCC---ceeecCC--CCHHHHH----HHH
Q 043578 459 CMAICDVSGSMH------GTP---MEVSVALGVLVSELSEEPWKGKLITFSENP---ELQVLEG--DSLRSRT----DFV 520 (639)
Q Consensus 459 ~iav~DvSGSM~------g~P---m~vaiaLgLl~aE~~~~pf~~~fITFS~~P---~l~~i~g--~~L~ekv----~~i 520 (639)
-+.+.|+||||+ |.+ ++++....=-|.+. ..-+.|-.|-|+... .++.+.- ..-.+.. +.+
T Consensus 3 l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f-~~~r~~DriG~~g~~~~~~~lt~d~p~t~d~~~~~~l~~~l 81 (191)
T cd01455 3 LKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGF-EDKIQYDIIGHSGDGPCVPFVKTNHPPKNNKERLETLKMMH 81 (191)
T ss_pred eEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHH-HHhCccceeeecCcccccCccccccCcccchhHHHHHHHHH
Confidence 367899999993 432 33433332222221 122333333354444 3433322 1112211 222
Q ss_pred HhCCCCCCccHHHHHHHHHHHHHhCCC-CcccccceEEEEecCCcccc
Q 043578 521 TEMEWGMNTDFQKVFDLILQVAVNGNL-KPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 521 ~~~~wg~nTn~~aVFdlIL~~Av~~~l-~~e~M~k~lfVfSDMeFD~a 567 (639)
..+..||.-+-.+ |-| ..|++.=- ..+.=.|-|+++||-+.+..
T Consensus 82 ~~~q~g~ag~~Ta--dAi-~~av~rl~~~~~a~~kvvILLTDG~n~~~ 126 (191)
T cd01455 82 AHSQFCWSGDHTV--EAT-EFAIKELAAKEDFDEAIVIVLSDANLERY 126 (191)
T ss_pred HhcccCccCccHH--HHH-HHHHHHHHhcCcCCCcEEEEEeCCCcCCC
Confidence 3555565544444 433 33442211 11222678899999986543
No 61
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=54.21 E-value=1.1e+02 Score=32.58 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=73.9
Q ss_pred CcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecC-C-CCHHHHHHHHHh-CCCCCCccHH
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLE-G-DSLRSRTDFVTE-MEWGMNTDFQ 532 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~-g-~~L~ekv~~i~~-~~wg~nTn~~ 532 (639)
-.|-..+.|.||||.+-++.-+..-....-..-.+-+.=.++||..+.....-. + .+-......+.. ..+++.|+..
T Consensus 37 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 116 (399)
T COG2304 37 PANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTGATNKESITAAIDQSLQAGGATAVE 116 (399)
T ss_pred CcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcccccCHHHHHHHHhhhhccccccHHH
Confidence 345677999999999977776665555555555555556788888855432221 2 333444455555 7888999999
Q ss_pred HHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 533 KVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 533 aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
..-..+...+-+... .+.+.+++...|+++.
T Consensus 117 ~~~~~~~~~~~~~~~--~~~~~~~~~~tdg~~~ 147 (399)
T COG2304 117 ASLSLAVELAAKALP--RGTLNRILLLTDGENN 147 (399)
T ss_pred HHHHHHHHHhhhcCC--ccceeeEeeeccCccc
Confidence 999888887766543 4578899999996664
No 62
>PRK05325 hypothetical protein; Provisional
Probab=50.61 E-value=17 Score=40.72 Aligned_cols=111 Identities=18% Similarity=0.267 Sum_probs=70.8
Q ss_pred CCcceEEEE--cCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCCCCCccHH
Q 043578 455 KLRNCMAIC--DVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQ 532 (639)
Q Consensus 455 ~l~n~iav~--DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~ 532 (639)
.-+|++++| ||||||....-++|-..-+++--.-+--|++-=|-|=.+-. ..+-.-| -+| =...-++.|=+.
T Consensus 219 p~s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t----~AkEVdE-eeF-F~~~esGGT~vS 292 (401)
T PRK05325 219 PESQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHT----EAKEVDE-EEF-FYSRESGGTIVS 292 (401)
T ss_pred ccCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecC----ceeEcCH-HHc-cccCCCCCeEeh
Confidence 346776555 99999999999999999988888888888775555533222 1222222 222 234456789999
Q ss_pred HHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHH
Q 043578 533 KVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVI 579 (639)
Q Consensus 533 aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~i 579 (639)
.++++.+++-. ...++++-==-+|=+|| +++|.++=+..
T Consensus 293 SA~~l~~eIi~-~rYpp~~wNIY~f~aSD-------GDNw~~D~~~~ 331 (401)
T PRK05325 293 SAYKLALEIIE-ERYPPAEWNIYAFQASD-------GDNWSSDNPRC 331 (401)
T ss_pred HHHHHHHHHHH-hhCCHhHCeeEEEEccc-------CCCcCCCCHHH
Confidence 99999887654 44455554334444555 35687665443
No 63
>PF13446 RPT: A repeated domain in UCH-protein
Probab=50.16 E-value=27 Score=28.47 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=21.7
Q ss_pred cccCCCCChhhHHHHHHHHHhcCHHH
Q 043578 74 FHVVPSTPPQTLTGFLNASWAHNPLT 99 (639)
Q Consensus 74 ~~v~~~t~~~~l~~ll~~AW~eDpl~ 99 (639)
+.|.++++.+.|+..|...|..||..
T Consensus 11 Lgi~~~~~Dd~Ii~~f~~~~~~~P~~ 36 (62)
T PF13446_consen 11 LGIDEDTDDDFIISAFQSKVNDDPSQ 36 (62)
T ss_pred hCcCCCCCHHHHHHHHHHHHHcChHh
Confidence 34677889999999999999998843
No 64
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=44.59 E-value=24 Score=39.19 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=82.5
Q ss_pred CcceEEEE--cCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCc-eeecCCCCHHHHHHHHHhCCCCCCccHH
Q 043578 456 LRNCMAIC--DVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPE-LQVLEGDSLRSRTDFVTEMEWGMNTDFQ 532 (639)
Q Consensus 456 l~n~iav~--DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~-l~~i~g~~L~ekv~~i~~~~wg~nTn~~ 532 (639)
-+||+++| ||||||....-++|-..-+++--.-+--|++-=|-|=.+-. -..|+ | -+| =....++.|=+.
T Consensus 200 ~s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~AkEVd-----E-eeF-F~~~EsGGT~vS 272 (371)
T TIGR02877 200 ESNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAKEVT-----E-EEF-FHKGESGGTYCS 272 (371)
T ss_pred cCcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeEEcC-----H-HHh-cccCCCCCeEeh
Confidence 45675554 99999999999999999988888778888876555543332 22332 2 222 234456789999
Q ss_pred HHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEec--cCCHHHHHHH
Q 043578 533 KVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVS--GFSKNMLTLF 610 (639)
Q Consensus 533 aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVS--GfS~~llK~f 610 (639)
.++++.++.- +...++++-==-.|=||| +++|.++=+...+--..-.|+. +.=|..=|. +.+.+|+..+
T Consensus 273 SA~~l~~eII-~~rYpp~~wNIY~f~aSD-------GDNw~~D~~~c~~ll~~llp~~-~~f~Y~Ei~~~~~~~~l~~~y 343 (371)
T TIGR02877 273 SGYKKALEII-DERYNPARYNIYAFHFSD-------GDNLTSDNERAVKLVRKLLEVC-NLFGYGEIMPYGYSNTLKNKF 343 (371)
T ss_pred HHHHHHHHHH-HhhCChhhCeeEEEEccc-------CCCccCCcHHHHHHHHHHHHhh-heEEEEEecCCCCcchHHHHH
Confidence 9999888764 445555554434455555 3568766554433311133432 222222233 4456666555
No 65
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=43.54 E-value=67 Score=29.51 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHhCCCCcccccCCCchHHHHHHH-HHHHHHHHhHHhhhhcCcccccccccCCCCCCCcchhHHHHHHhHH
Q 043578 313 ATLICESIARKVFPKTLYTEYEGIEDAHYAYRV-RDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKD 391 (639)
Q Consensus 313 ~t~i~~~IA~~Lfp~~s~~~~~~~~~~~Y~~~~-R~~lRr~~LspLRk~L~l~E~~msa~~w~~I~Y~rVpSvAMk~Yk~ 391 (639)
...+..+|++.|+|.+..|.-..+.-..|+-+. .+.+..+--..+|.-| ..+-+.|+++|.+
T Consensus 4 e~~~L~ai~~~iiP~~~~pgA~~~~v~~fId~~l~~~~~~~~~~~~~~gl-----------------~~ld~~a~~~~g~ 66 (131)
T PF13618_consen 4 EAATLAAIADTIIPADDTPGASDAGVPEFIDRMLADCYMPEDRRAFRAGL-----------------AALDAYAQKRYGK 66 (131)
T ss_pred HHHHHHHHHHHhcCCCCCCChhhcChHHHHHHHHhcCCCHHHHHHHHHHH-----------------HHHHHHHHHHhCC
Confidence 445567899999999877665444444443211 1112122222233333 2345788999999
Q ss_pred HHhhcCHHHHHHHHHHHhcccc
Q 043578 392 KFLMHDPERFKKYLEDVKAGKA 413 (639)
Q Consensus 392 aF~khD~eRf~~YL~~V~~Gka 413 (639)
-|.+-+.+...+.|.++..++.
T Consensus 67 ~F~~l~~~~~~~lL~~~~~~~~ 88 (131)
T PF13618_consen 67 SFAELSPAQREALLDALEKSEA 88 (131)
T ss_pred ChhhCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999987
No 66
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=35.51 E-value=3.1e+02 Score=25.02 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=45.3
Q ss_pred CCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCCCCCccHHH
Q 043578 454 GKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQK 533 (639)
Q Consensus 454 G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~a 533 (639)
..-+..|+++|.= .|+|..++..+.. ..+.++.|.|-+|.=-++.+.....+ .+++.
T Consensus 55 ~~~~~viil~Dl~---GGSp~n~~~~~~~------------------~~~~~~visG~nlpmlle~~~~~~~~--~~~~e 111 (122)
T cd00006 55 DSGEGVLILTDLF---GGSPNNAAARLSM------------------EHPPVEVIAGVNLPMLLEAARARELG--LSLDE 111 (122)
T ss_pred CCCCcEEEEEeCC---CCCHHHHHHHHHh------------------cCCCEEEEEccCHHHHHHHHHccccC--CCHHH
Confidence 4456799999983 4678887654431 12457788999888777777666553 46777
Q ss_pred HHHHHHHHHH
Q 043578 534 VFDLILQVAV 543 (639)
Q Consensus 534 VFdlIL~~Av 543 (639)
+-+.+++.|+
T Consensus 112 ~~~~~~~~~~ 121 (122)
T cd00006 112 LVENALEAGR 121 (122)
T ss_pred HHHHHHHhcc
Confidence 7776666553
No 67
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=26.03 E-value=81 Score=35.52 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=50.0
Q ss_pred CcceEEEE--cCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCCCCCccHHH
Q 043578 456 LRNCMAIC--DVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQK 533 (639)
Q Consensus 456 l~n~iav~--DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~a 533 (639)
-+|++++| ||||||...--+.|=..=+++.=.-..-|.+-=|.|=.+..- +. -++-.+|. ...-++.|=+..
T Consensus 244 es~AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~----A~-EVdE~dFF-~~~esGGTivSS 317 (423)
T COG2718 244 ESNAVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTE----AK-EVDETDFF-YSQESGGTIVSS 317 (423)
T ss_pred ccceEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCc----ce-ecchhhce-eecCCCCeEeHH
Confidence 35665554 999999975555554333333333345555555555333221 11 11122222 123345677777
Q ss_pred HHHHHHHHHHhCCCCcccccceEEEEecC
Q 043578 534 VFDLILQVAVNGNLKPEQMIKRLFVFSDM 562 (639)
Q Consensus 534 VFdlIL~~Av~~~l~~e~M~k~lfVfSDM 562 (639)
++++.+++-.+ ..++.+-=--.|=+||-
T Consensus 318 Al~~m~evi~E-rYp~aeWNIY~fqaSDG 345 (423)
T COG2718 318 ALKLMLEVIKE-RYPPAEWNIYAFQASDG 345 (423)
T ss_pred HHHHHHHHHHh-hCChhheeeeeeeecCC
Confidence 88777776443 34444433334445553
No 68
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=25.61 E-value=39 Score=24.83 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=10.9
Q ss_pred CCCCCCCChhHHH
Q 043578 465 VSGSMHGTPMEVS 477 (639)
Q Consensus 465 vSGSM~g~Pm~va 477 (639)
.|||++|.|.-|=
T Consensus 11 tSGSGSG~p~Lvq 23 (30)
T smart00467 11 TSGSGSGLPLLVQ 23 (30)
T ss_pred cCCCCCCchhHHH
Confidence 6899999998663
No 69
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=23.83 E-value=55 Score=37.71 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=40.5
Q ss_pred ceEEEEecCCcccccCCCCchhHHHHHHh--cCCCCCcccCCCCeEEeccCCHHHHHHHHcCCCCCCHHHHH
Q 043578 554 KRLFVFSDMEFDQASANPWETDYQVIVNK--DSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVM 623 (639)
Q Consensus 554 k~lfVfSDMeFD~a~~~~w~T~ye~ik~k--~s~~~PVt~~~~GvaLVSGfS~~llK~fLe~~g~~~P~~vm 623 (639)
|||+++|||=|-.+-= -+..... +-.+.||-+ .|--..|--|.+|+|.+|..+ .+||-..|
T Consensus 116 krVIlISDMYlps~Il------~~~L~s~g~d~~nipiY~--S~e~rl~KnSg~LFk~Vlk~E-nVd~~~w~ 178 (635)
T COG5610 116 KRVILISDMYLPSSIL------RTFLNSFGPDFNNIPIYM--SSEFRLKKNSGNLFKAVLKLE-NVDPKKWI 178 (635)
T ss_pred CeEEEEecccCcHHHH------HHHHHhcCCCccCceeee--cceeehhcccchHHHHHHhhc-CCChhheE
Confidence 7999999999875421 0011111 335677743 345678888999999999763 67776654
Done!