Query 043578
Match_columns 639
No_of_seqs 136 out of 159
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yvr_A RO autoantigen, 60-kDa 99.9 1.7E-22 5.8E-27 223.2 19.5 371 84-612 106-532 (538)
2 2nvo_A RO sixty-related protei 99.9 8.1E-21 2.8E-25 210.3 21.9 226 370-612 259-528 (535)
3 2x31_A Magnesium-chelatase 60 98.4 2.4E-06 8.3E-11 80.0 11.5 110 456-567 5-116 (189)
4 1shu_X Anthrax toxin receptor 97.8 4.7E-05 1.6E-09 70.3 9.1 107 457-565 7-116 (182)
5 1q0p_A Complement factor B; VO 97.8 7.3E-05 2.5E-09 71.1 10.5 111 456-566 15-141 (223)
6 2xgg_A Microneme protein 2; A/ 97.8 0.00015 5.2E-09 67.7 11.4 110 456-565 17-135 (178)
7 3ibs_A Conserved hypothetical 97.8 0.00012 4E-09 69.7 10.7 148 456-612 11-186 (218)
8 3n2n_F Anthrax toxin receptor 97.7 6E-05 2.1E-09 69.8 7.8 107 458-564 9-118 (185)
9 1atz_A VON willebrand factor; 97.7 0.00035 1.2E-08 65.5 12.2 106 457-563 6-119 (189)
10 4hqo_A Sporozoite surface prot 97.6 0.00022 7.7E-09 71.3 10.3 108 457-565 19-138 (266)
11 1ijb_A VON willebrand factor; 97.5 0.00073 2.5E-08 64.5 12.0 108 457-565 14-128 (202)
12 4hqf_A Thrombospondin-related 97.5 0.00046 1.6E-08 69.3 10.8 109 456-565 21-141 (281)
13 4fx5_A VON willebrand factor t 97.4 0.00036 1.2E-08 76.2 9.2 146 454-612 75-231 (464)
14 1mf7_A Integrin alpha M; cell 97.3 0.00013 4.5E-09 68.6 4.4 104 458-565 7-119 (194)
15 1v7p_C Integrin alpha-2; snake 97.1 0.0032 1.1E-07 59.6 11.3 106 457-565 7-121 (200)
16 1n3y_A Integrin alpha-X; alpha 97.1 0.00025 8.7E-09 66.4 3.2 106 457-565 10-123 (198)
17 1pt6_A Integrin alpha-1; cell 97.0 0.0024 8.1E-08 61.1 9.9 106 457-565 8-122 (213)
18 3hrz_D Complement factor B; se 97.0 0.0061 2.1E-07 68.6 14.5 155 457-613 244-420 (741)
19 2b2x_A Integrin alpha-1; compu 97.0 0.0029 1E-07 61.0 10.2 107 456-565 22-137 (223)
20 1rrk_A Complement factor B; BB 97.0 0.0019 6.5E-08 69.2 9.7 154 458-613 3-178 (497)
21 4b4t_W RPN10, 26S proteasome r 96.9 0.0047 1.6E-07 63.3 11.4 109 456-566 3-120 (268)
22 1mjn_A Integrin alpha-L; rossm 96.9 0.00066 2.2E-08 63.6 4.6 105 458-565 4-116 (179)
23 2odp_A Complement C2; C3/C5 co 96.8 0.0017 5.8E-08 70.0 7.6 111 457-567 10-139 (509)
24 3zqk_A VON willebrand factor; 96.8 0.0017 5.7E-08 61.8 6.7 108 455-563 20-136 (199)
25 3rag_A Uncharacterized protein 95.7 0.063 2.2E-06 54.4 11.3 95 445-542 124-225 (242)
26 2x5n_A SPRPN10, 26S proteasome 93.6 0.4 1.4E-05 46.1 10.7 107 456-564 2-117 (192)
27 3k6s_A Integrin alpha-X; cell 93.0 0.086 2.9E-06 63.3 5.9 105 458-564 132-243 (1095)
28 1jey_B KU80; double-strand DNA 88.8 1.6 5.5E-05 48.5 10.5 112 453-566 4-142 (565)
29 2ww8_A RRGA, cell WALL surface 88.2 1.9 6.4E-05 50.9 11.0 36 526-563 354-389 (893)
30 2iue_A Pactolus I-domain; memb 71.4 7 0.00024 38.6 6.7 106 459-567 6-119 (212)
31 1jey_A KU70; double-strand DNA 63.1 18 0.00063 40.5 8.8 104 457-563 36-173 (609)
32 3vi3_B Integrin beta-1; beta p 58.5 11 0.00037 41.4 5.6 138 419-568 93-266 (454)
33 3fcs_B Integrin beta-3; beta p 58.1 8.7 0.0003 44.1 5.1 109 457-567 112-257 (690)
34 3k6s_B Integrin beta-2; cell r 57.0 6.7 0.00023 45.1 3.9 108 457-567 105-248 (687)
35 3v4v_B Integrin beta-7; cell a 48.8 13 0.00043 41.4 4.2 140 418-568 102-277 (503)
36 3bed_A PTS system, IIA compone 48.7 1E+02 0.0035 27.8 9.7 74 446-545 52-125 (142)
37 3t3p_B Integrin beta-3; integr 46.3 25 0.00086 38.7 6.1 141 418-568 81-258 (472)
38 1pdo_A Mannose permease; phosp 45.3 1.3E+02 0.0044 26.8 9.8 79 445-546 47-125 (135)
39 4fbj_A CIF, hypothetical prote 31.1 16 0.00054 36.6 1.3 25 599-623 75-100 (261)
40 3mtq_A Putative phosphoenolpyr 30.0 1.4E+02 0.0047 27.9 7.6 75 446-545 67-141 (159)
41 3lfh_A Manxa, phosphotransfera 24.5 3.4E+02 0.012 24.6 9.1 77 445-546 49-126 (144)
No 1
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.89 E-value=1.7e-22 Score=223.21 Aligned_cols=371 Identities=14% Similarity=0.161 Sum_probs=251.1
Q ss_pred hHHHHHHHHHh---cCHHHHHHHHHHhhcCCCCCCc----hhHHHHHHHHHHHhhChhhHHHhhHhhhhcCCC--CChHH
Q 043578 84 TLTGFLNASWA---HNPLTTLKLICNLRGVRGTGKS----DKEGFYTAALWLHSLHPKTFACNVALFAEFGYF--KDLPE 154 (639)
Q Consensus 84 ~l~~ll~~AW~---eDpl~tLKlif~lR~IRg~GKg----eR~~Fy~a~~WL~~~HP~Tl~~NL~~l~~~Gyw--KDLl~ 154 (639)
.-..++.++|. .+|...+.++.+.|++|| |+| .|..+.....|+.+.+|..|+.+|......|.| +|++.
T Consensus 106 ~~r~~~~~~~~~v~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~~r~av~~w~~~~~~~~la~~l~ky~~~~~~~~~Dll~ 184 (538)
T 1yvr_A 106 KTKQAAFRAVPEVCRIPTHLFTFIQFKKDLKE-GMKCGMWGRALRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLR 184 (538)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHTSCHHHHHHHHTSCCCSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchHHHHHHHHHHHHHh-ccCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCcHHHHhh
Confidence 44667778888 899999999999999997 777 899999999999999999999999999999999 89886
Q ss_pred HHHHHhcCCchhhhhHHHHHHhhcCCcccccccccccccchhhhhhccccccccCcccccCCCcccchHHHHHHHHHHhh
Q 043578 155 IIYRLLEGSDVRQIQKAEWERRKRGGSRVVKKGIYSRRGRKFRMIMSRSRNCKQQPKRRKKKPAVADTRELRVANAMQRN 234 (639)
Q Consensus 155 ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (639)
+.+... .
T Consensus 185 l~h~~~---------------------------------------------------------~---------------- 191 (538)
T 1yvr_A 185 LSHIKP---------------------------------------------------------A---------------- 191 (538)
T ss_dssp HTTCCC---------------------------------------------------------S----------------
T ss_pred hcCCCC---------------------------------------------------------c----------------
Confidence 533100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccCCCCCCcchhh
Q 043578 235 KLEKERASALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRAT 314 (639)
Q Consensus 235 ~~~~~~a~~~r~~~~~~~~~~~~~~~~~d~~yraL~~~va~lfa~qL~~D~~~L~~g~~~~iSLaAKW~PS~~~s~Dr~t 314 (639)
.....+|..+|.+|.+. ++||.|+...+++...
T Consensus 192 ------------------------------------~~~~~l~~~~l~~~~~~-----------~~k~~~~~~~~~~~~~ 224 (538)
T 1yvr_A 192 ------------------------------------NEGLTMVAKYVSKGWKE-----------VQEAYKEKELSPETEK 224 (538)
T ss_dssp ------------------------------------SHHHHHHHHHHHTCHHH-----------HHHHTTTCCCCHHHHH
T ss_pred ------------------------------------HHHHHHHHHHhcCCHHH-----------HHHhhccccccccHHH
Confidence 00123455555554433 2899999987764211
Q ss_pred hHHHHHHHHhCCCCcccccCCCch-HHHHHHHHHHHHHHHhHHhhhhcCcccc-----cccccCCCCCCCcchhHHHHHH
Q 043578 315 LICESIARKVFPKTLYTEYEGIED-AHYAYRVRDRLRKQVLVPLRKALELPEV-----YIGANRWDSLPYNRVASVAMKL 388 (639)
Q Consensus 315 ~i~~~IA~~Lfp~~s~~~~~~~~~-~~Y~~~~R~~lRr~~LspLRk~L~l~E~-----~msa~~w~~I~Y~rVpSvAMk~ 388 (639)
+.+.|.... .+.. ..| ++++..|+++--..|. .++.+.|+.| +.++|..||.+
T Consensus 225 -~~~~~~~~~----------~~~~~~~~---------~~~~~~i~~~~~t~E~~~~~l~~~~~~we~l-~~~~~~~allr 283 (538)
T 1yvr_A 225 -VLKYLEATE----------RVKRTKDE---------LEIIHLIDEYRLVREHLLTIHLKSKEIWKSL-LQDMPLTALLR 283 (538)
T ss_dssp -HHHHHHHHH----------HHHTCCCH---------HHHHHHHHHHCCCGGGSCTTGGGCHHHHHHH-HHTCCHHHHHH
T ss_pred -HHHHHHHHH----------HHHhcCCH---------HHHHHHHHhcCCCHhhchhhhcCCHHHHHHH-HhcCCHHHHHH
Confidence 112121111 0000 112 4567888887666677 7888999988 78999999999
Q ss_pred hHHHHhhcC-----HHHHHHHHHHHhcccccccccccchHHHHhhhc---CCCCcchHHHHHHH------HHHHH--Hhh
Q 043578 389 YKDKFLMHD-----PERFKKYLEDVKAGKAKIAAGALLPHEIIGSLD---DPFDGGQVAELQWK------RIVDD--LMQ 452 (639)
Q Consensus 389 Yk~aF~khD-----~eRf~~YL~~V~~GkaKI~a~aLlPheIi~~~~---~~~~~~~vae~QWk------~lvd~--l~~ 452 (639)
+-..|++++ .++++++++.+.. +.++..+.++|+.++.++. .+ .+......|+ ...+. .+.
T Consensus 284 nlr~~~~~g~~~~~~~~~~~v~~~L~~-~~~v~~s~~~P~~~~~a~r~y~~g--~~~~~~i~w~~~~r~~~al~~~~~~~ 360 (538)
T 1yvr_A 284 NLGKMTADSVLAPASSEVSSVCERLTN-EKLLKKARIHPFHILVALETYKKG--HGNRGKLRWIPDTSIVEALDNAFYKS 360 (538)
T ss_dssp HHHHHHHTTTTCTTCHHHHHHHHHHTC-HHHHHHTTCCHHHHHHHHHHHHHC--C-----CCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcC-HHhHhhccCCcHHHHHHHHHhhcc--CCcCCCcCCCcchhHHHHHHHHHHHH
Confidence 999999987 6799999999998 7889999999999988876 22 1111112232 11111 111
Q ss_pred c----CCCcceEEEEcCCCCCCC-------ChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecC-CCCHHHHHHHH
Q 043578 453 K----GKLRNCMAICDVSGSMHG-------TPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLE-GDSLRSRTDFV 520 (639)
Q Consensus 453 ~----G~l~n~iav~DvSGSM~g-------~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~-g~~L~ekv~~i 520 (639)
. ..-.+.+.|+|+||||.+ ...++|.+|++.....+. +-.+|+|++....+.+. ..++.+.++.+
T Consensus 361 ~~~~~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d---~vglv~Fs~~~~~~~~t~~~~l~~~l~~l 437 (538)
T 1yvr_A 361 FKLVEPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEK---DSHMVAFSDEMLPCPITVNMLLHEVVEKM 437 (538)
T ss_dssp SCCCCCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCS---SEEEEEESSSEECCSCCTTSCHHHHHHHH
T ss_pred HhhcCCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCC---ceEEEEECCCceEcCCCCcccHHHHHHHH
Confidence 1 234578889999999985 235556667665554332 46889999844333444 44799999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHh------------c-CCCC
Q 043578 521 TEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNK------------D-SRST 587 (639)
Q Consensus 521 ~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k------------~-s~~~ 587 (639)
..+ ++++||+.......++ . ..-++.|+||||++++.....+ ....+.++++ + ....
T Consensus 438 ~~~-~~GgT~i~~aL~~a~~----~----~~~~~~iIliTDg~~~~g~~~~-~~~l~~~~~~~~~~v~l~~igig~~~~~ 507 (538)
T 1yvr_A 438 SDI-TMGSTDCALPMLWAQK----T----NTAADIFIVFTDCETNVEDVHP-ATALKQYREKMGIPAKLIVCAMTSNGFS 507 (538)
T ss_dssp TTC-CCSCCCTTHHHHHHHH----T----TCCCSEEEEEECCCCCSSSCCH-HHHHHHHHHHHTCCCEEEEEECSSSSEE
T ss_pred hcC-CCCCCcHHHHHHHHHh----c----cCCCCEEEEEcCCCCCCCCCCH-HHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 876 7889999886654443 3 2346889999999988643211 1222233333 2 2345
Q ss_pred CcccCCCCeEEeccCCHHHHHHHHc
Q 043578 588 PVLGTQKGVALVSGFSKNMLTLFLD 612 (639)
Q Consensus 588 PVt~~~~GvaLVSGfS~~llK~fLe 612 (639)
|+..+..|+..++|||..+|+++=+
T Consensus 508 ~~~~~~~~~~~i~g~~e~~l~~Ia~ 532 (538)
T 1yvr_A 508 IADPDDRGMLDICGFDSGALDVIRN 532 (538)
T ss_dssp SSCTTCTTEEEEETTCTTHHHHHHH
T ss_pred ccCCCCCCceeeccCCHHHHHHHHH
Confidence 6667889999999999999998764
No 2
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.86 E-value=8.1e-21 Score=210.33 Aligned_cols=226 Identities=17% Similarity=0.181 Sum_probs=170.9
Q ss_pred ccCCCCCCCcchhHHHHHHhHHHHhhc------CHHHHHHHHHHHhcccccccccccchHHHHhhhc---CCCCcchHHH
Q 043578 370 ANRWDSLPYNRVASVAMKLYKDKFLMH------DPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLD---DPFDGGQVAE 440 (639)
Q Consensus 370 a~~w~~I~Y~rVpSvAMk~Yk~aF~kh------D~eRf~~YL~~V~~GkaKI~a~aLlPheIi~~~~---~~~~~~~vae 440 (639)
++.|+.| +.++|+.||.+|-..|.+| |++|+++|++.+. ++.+|+.+.++|++++.++. .| .+++-.
T Consensus 259 ~~~W~~L-i~~mp~~AllrNlr~~~~~g~~~~~~~~~~e~v~~~L~-d~~~v~~s~~~Pf~~~~a~r~y~~G--~dd~r~ 334 (535)
T 2nvo_A 259 AEVYRAA-MQTNGLTWLLRNLGNLGRVGVLTPNDSATVQAVIERLT-DPAALKRGRIHPLDALKARLVYAQG--QGVRGK 334 (535)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHHTTSSCTTCHHHHHHHHHHHT-CHHHHHHTTCCHHHHHHHHHHHHTS--BCSTTC
T ss_pred HHHHHHH-HHCCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhC-CHhhHhhcCCCcHHHHHHHHHhhcc--cCccCC
Confidence 8999999 6699999999999999999 6779999999998 77899999999999998877 22 222333
Q ss_pred HHH---HHHHHHHhh-------c--CCCcceEEEEcCCCCCCC---------ChhHHHHHHHHHHhhcccCCCCCeEEee
Q 043578 441 LQW---KRIVDDLMQ-------K--GKLRNCMAICDVSGSMHG---------TPMEVSVALGVLVSELSEEPWKGKLITF 499 (639)
Q Consensus 441 ~QW---k~lvd~l~~-------~--G~l~n~iav~DvSGSM~g---------~Pm~vaiaLgLl~aE~~~~pf~~~fITF 499 (639)
.+| .++++.+.+ . ..-.+.++++||||||.+ +++++|.+|+++....+. +-.+|+|
T Consensus 335 idW~~~ar~~~al~~a~~~~~~~~~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d---~v~lv~F 411 (535)
T 2nvo_A 335 GTWLPVPRVVDALEEAFTLAFGNVQPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP---DALTMGF 411 (535)
T ss_dssp CBCCCCHHHHHHHHHHHHHHGGGCCCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSS---EEEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHHhhcCCCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCC---ceEEEEE
Confidence 456 232221111 1 123457778899999975 468899999988887766 6799999
Q ss_pred CCCCceeecC-CCCHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHH
Q 043578 500 SENPELQVLE-GDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQV 578 (639)
Q Consensus 500 S~~P~l~~i~-g~~L~ekv~~i~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ 578 (639)
|..+..+.+. ..++.+.++.|.... +++||+..+. ..|.+.+. -++.||||||+||+.+...+ .+-.+.
T Consensus 412 s~~~~~~~~~~~~~l~~~l~~l~~~~-~ggTdi~~~l----~~a~~~~~----~~~~vIliTD~~~~~g~~~~-~~al~~ 481 (535)
T 2nvo_A 412 AEQFRPLGITPRDTLESAMQKAQSVS-FGGTDCAQPI----LWAAQERL----DVDTFVVYTDNETWAGQVHP-TVALDQ 481 (535)
T ss_dssp BSSEEECCCCTTCCHHHHHHHTCCSS-BCCCCTTHHH----HHHHHTTC----CCSEEEEEESSCCCCCSSCH-HHHHHH
T ss_pred CCcceEcCCCcchhHHHHHHHHhhCC-CCCccHHHHH----HHHHHhcC----CCCEEEEEeCCCccCCCCCH-HHHHHH
Confidence 9976555565 578999999997776 5699999984 45566554 36889999999999875322 223333
Q ss_pred HHHh-------------cCCCCCcccCCCCeEEeccCCHHHHHHHHc
Q 043578 579 IVNK-------------DSRSTPVLGTQKGVALVSGFSKNMLTLFLD 612 (639)
Q Consensus 579 ik~k-------------~s~~~PVt~~~~GvaLVSGfS~~llK~fLe 612 (639)
.+++ ..+..|++.+.+|+++|||||.++|+.+=+
T Consensus 482 ~r~~~~~~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~ 528 (535)
T 2nvo_A 482 YAQKMGRAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTA 528 (535)
T ss_dssp HHHHHSCCCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHH
T ss_pred HHHhhCCCCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHH
Confidence 3433 346788888999999999999999998764
No 3
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.35 E-value=2.4e-06 Score=80.01 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=79.7
Q ss_pred CcceEEEEcCCCCCCCChhHHHHHHHHHHh-hcccCCCCCeEEeeCC-CCceeecCCCCHHHHHHHHHhCCCCCCccHHH
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVALGVLVS-ELSEEPWKGKLITFSE-NPELQVLEGDSLRSRTDFVTEMEWGMNTDFQK 533 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaiaLgLl~a-E~~~~pf~~~fITFS~-~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~a 533 (639)
-.+.+.|+|+||||.|..++.+......+. .+..+.-+=.+|+|++ .+++..=...+..+-.+.+.....++.||+..
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~T~~~~ 84 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGTPLAS 84 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCBCCCCHH
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCCCCCHHH
Confidence 357889999999999988888766655555 4424445667999997 55533222456766677788888889999999
Q ss_pred HHHHHHHHHHhCCCCcccccceEEEEecCCcccc
Q 043578 534 VFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 534 VFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
.+...++......- .+-++.|+||||-+.+..
T Consensus 85 al~~a~~~l~~~~~--~~~~~~ivliTDG~~~~~ 116 (189)
T 2x31_A 85 GMEMAMVTAKQARS--RGMTPTIALLTDGRGNIA 116 (189)
T ss_dssp HHHHHHHHHHTCTT--TCSSEEEEECCBSCCSSC
T ss_pred HHHHHHHHHHhccC--CCCceEEEEECCCCCCCC
Confidence 99988888776432 256889999999987653
No 4
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.85 E-value=4.7e-05 Score=70.32 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=72.8
Q ss_pred cceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCcee-ecC--CCCHHHHHHHHHhCCCCCCccHHH
Q 043578 457 RNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQ-VLE--GDSLRSRTDFVTEMEWGMNTDFQK 533 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~-~i~--g~~L~ekv~~i~~~~wg~nTn~~a 533 (639)
-+.+.|+|+||||.+..+..--.+.-++..+-.+.-+=.+|+|+++++.+ .+. -..+.+.++.+.....++.||+..
T Consensus 7 ~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~T~~~~ 86 (182)
T 1shu_X 7 FDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 86 (182)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHH
T ss_pred eeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCCCCHHHHHHHHHhcccCCCCCCchHHH
Confidence 36789999999999865532222222333333333334679999998854 333 235777788887767788999999
Q ss_pred HHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 534 VFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 534 VFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
.+...++...... ...-++.|+||||-+-+
T Consensus 87 al~~a~~~l~~~~--~~~~~~~iiliTDG~~~ 116 (182)
T 1shu_X 87 GLKLANEQIQKAG--GLKTSSIIIALTDGKLD 116 (182)
T ss_dssp HHHHHHHHHHHHT--GGGSCEEEEEEECCCCC
T ss_pred HHHHHHHHHHhcc--CCCCCeEEEEECCCCcC
Confidence 9988777665432 34568899999998854
No 5
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.84 E-value=7.3e-05 Score=71.12 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=75.5
Q ss_pred CcceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCC--CCCeEEeeCCCCceee----cCCCCHHHHHHHHHhCCC---
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEP--WKGKLITFSENPELQV----LEGDSLRSRTDFVTEMEW--- 525 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~p--f~~~fITFS~~P~l~~----i~g~~L~ekv~~i~~~~w--- 525 (639)
--+.+.|+|+||||.+..++.+.. +.-++..+...+ -+=.+|+|++.+..+. ....+..+-.+.+..+.+
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 94 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH 94 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSC
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcccccc
Confidence 347888999999999877776654 344555554423 2346899999998764 222233445555666664
Q ss_pred --CCCccHHHHHHHHHHHHHhCCC-Cc---ccccceEEEEecCCccc
Q 043578 526 --GMNTDFQKVFDLILQVAVNGNL-KP---EQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 526 --g~nTn~~aVFdlIL~~Av~~~l-~~---e~M~k~lfVfSDMeFD~ 566 (639)
++.||+...+...++.....+- .+ ..-++.|++|||-+-+.
T Consensus 95 ~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 141 (223)
T 1q0p_A 95 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 141 (223)
T ss_dssp SCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCS
T ss_pred cCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCC
Confidence 7899999999988877653221 11 36788999999987654
No 6
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.78 E-value=0.00015 Score=67.72 Aligned_cols=110 Identities=19% Similarity=0.153 Sum_probs=76.0
Q ss_pred CcceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCC--CCCeEEeeCCCCceeec-C-CC--CHHHHHHHHHhCC-CCC
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEP--WKGKLITFSENPELQVL-E-GD--SLRSRTDFVTEME-WGM 527 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~p--f~~~fITFS~~P~l~~i-~-g~--~L~ekv~~i~~~~-wg~ 527 (639)
--+.+.|+|+||||.+..++.+. ++.-++..+..+| .+=.+|+|++++..+.- . .. +..+-.+.+.++. .++
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g 96 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYKKG 96 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCCCCCC
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCCCCCC
Confidence 45678899999999876555443 4455666666444 34468999999985432 2 12 5566666677777 578
Q ss_pred CccHHHHHHHHHHHHHhC-CCCcccccceEEEEecCCcc
Q 043578 528 NTDFQKVFDLILQVAVNG-NLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 528 nTn~~aVFdlIL~~Av~~-~l~~e~M~k~lfVfSDMeFD 565 (639)
.||+.+.++..++..... +-..+.-++.|+|+||-+-+
T Consensus 97 ~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~ 135 (178)
T 2xgg_A 97 STNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESD 135 (178)
T ss_dssp CCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCC
T ss_pred CccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCC
Confidence 999999998887764322 11234678999999997754
No 7
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=0.00012 Score=69.75 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=91.5
Q ss_pred CcceEEEEcCCCCCCCC-----hhHHHHHHHHH-HhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCC----
Q 043578 456 LRNCMAICDVSGSMHGT-----PMEVSVALGVL-VSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEW---- 525 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~-----Pm~vaiaLgLl-~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~w---- 525 (639)
--+.+.|+|+||||.+. .++.+.....- +..+. --+=.+|+|+.++..+.=-..+.....+.+.....
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~--~~~v~lv~F~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 88 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD--NDKVGMIVFAGDAFTQLPITSDYISAKMFLESISPSLIS 88 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS--SCEEEEEEESSSEEEEEEEESCHHHHHHHHHTCCGGGCC
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC--CCeEEEEEECCCceEeCCCCCCHHHHHHHHHhcCcccCC
Confidence 45788999999999974 67766554443 44442 12336899999988553323344444445555554
Q ss_pred CCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHh---------cC---CCCCcc---
Q 043578 526 GMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNK---------DS---RSTPVL--- 590 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k---------~s---~~~PVt--- 590 (639)
++.||+...+...++..... ..-.+.|++|||-+-+.. .+...-+.+++. .. ..+|+.
T Consensus 89 ~g~T~l~~al~~a~~~l~~~----~~~~~~ivllTDG~~~~~---~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~ 161 (218)
T 3ibs_A 89 KQGTAIGEAINLATRSFTPQ----EGVGRAIIVITDGENHEG---GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTN 161 (218)
T ss_dssp SCSCCHHHHHHHHHTTSCSC----SSCCEEEEEEECCTTCCS---CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSS
T ss_pred CCCCcHHHHHHHHHHHHhhC----CCCCcEEEEEcCCCCCCC---cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCC
Confidence 68899999987665433222 356789999999875532 122222333333 11 112222
Q ss_pred ---cCCCCeEEeccCCHHHHHHHHc
Q 043578 591 ---GTQKGVALVSGFSKNMLTLFLD 612 (639)
Q Consensus 591 ---~~~~GvaLVSGfS~~llK~fLe 612 (639)
.++.|-.++|......|+-+-+
T Consensus 162 ~~~~~~~g~~~~~~~~~~~L~~iA~ 186 (218)
T 3ibs_A 162 DYRRDREGNVIVTRLNEGMCQEIAK 186 (218)
T ss_dssp CBCBCTTSCBCEECCCHHHHHHHHH
T ss_pred ceeEcCCCCEeEecCCHHHHHHHHH
Confidence 3456677788899999998876
No 8
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.73 E-value=6e-05 Score=69.79 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceee-cC--CCCHHHHHHHHHhCCCCCCccHHHH
Q 043578 458 NCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQV-LE--GDSLRSRTDFVTEMEWGMNTDFQKV 534 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~-i~--g~~L~ekv~~i~~~~wg~nTn~~aV 534 (639)
|.+.|+|+||||.+.--..--.+--++..+-.+--+=.+|+|+++++.+. +. ...+.+.++.+.....|+.||+...
T Consensus 9 div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~g~T~~~~a 88 (185)
T 3n2n_F 9 DLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEG 88 (185)
T ss_dssp EEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHH
T ss_pred eEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCCCHHHHHHHHHHHhhhcCCCCccHHHH
Confidence 57889999999986311111122223333333333447899999998653 33 2367777888887666889999999
Q ss_pred HHHHHHHHHhCCCCcccccceEEEEecCCc
Q 043578 535 FDLILQVAVNGNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 535 FdlIL~~Av~~~l~~e~M~k~lfVfSDMeF 564 (639)
++..++......-....-++.|+|+||-+-
T Consensus 89 l~~a~~~l~~~~~~~~~~~~~iillTDG~~ 118 (185)
T 3n2n_F 89 FERASEQIYYENRQGYRTASVIIALTDGEL 118 (185)
T ss_dssp HHHHHHHHHHHHTTCBCEEEEEEEEECCCC
T ss_pred HHHHHHHHhhccccCCCCCcEEEEEcCCCC
Confidence 987766543211112236899999999764
No 9
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.67 E-value=0.00035 Score=65.48 Aligned_cols=106 Identities=9% Similarity=0.116 Sum_probs=73.1
Q ss_pred cceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCC--CCCeEEeeCCCCceeec-C-CCCHHHHHHHHHhCCC-CCCcc
Q 043578 457 RNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEP--WKGKLITFSENPELQVL-E-GDSLRSRTDFVTEMEW-GMNTD 530 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~p--f~~~fITFS~~P~l~~i-~-g~~L~ekv~~i~~~~w-g~nTn 530 (639)
-+.+.|+|+||||.+..++.+.. +.-++..+..+| -+=.+|+|+++++.+.- . ..+..+-.+.+..+.+ |+.||
T Consensus 6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T~ 85 (189)
T 1atz_A 6 LDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQ 85 (189)
T ss_dssp EEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCCCCC
T ss_pred eeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCcCCCCcch
Confidence 36788999999999877766553 455666665444 33468999999986432 1 4455666666777775 88999
Q ss_pred HHHHHHHHHHHHHhC--CCCcccccceEEEEecCC
Q 043578 531 FQKVFDLILQVAVNG--NLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 531 ~~aVFdlIL~~Av~~--~l~~e~M~k~lfVfSDMe 563 (639)
+...+...++..... +-. ...++.++|++|-.
T Consensus 86 ~~~aL~~a~~~l~~~~~g~r-~~~~~~vivltdg~ 119 (189)
T 1atz_A 86 IGDALGFAVRYLTSEMHGAR-PGASKAVVILVTDV 119 (189)
T ss_dssp HHHHHHHHHHHHHSCCTTCC-TTSEEEEEEEECSC
T ss_pred HHHHHHHHHHHHhccccCCC-CCCCcEEEEEeCCC
Confidence 999998887766542 112 24577788888853
No 10
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.60 E-value=0.00022 Score=71.35 Aligned_cols=108 Identities=16% Similarity=0.073 Sum_probs=74.4
Q ss_pred cceEEEEcCCCCCCCChh--HHHHHHHHHHhhcccCCCCCe--EEeeCCCCceee-cCC------CCHHHHHHHHH-hCC
Q 043578 457 RNCMAICDVSGSMHGTPM--EVSVALGVLVSELSEEPWKGK--LITFSENPELQV-LEG------DSLRSRTDFVT-EME 524 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm--~vaiaLgLl~aE~~~~pf~~~--fITFS~~P~l~~-i~g------~~L~ekv~~i~-~~~ 524 (639)
-|.+.|+|+||||.+..+ .+--++.-++..+.-+|-..+ +|+|+++++.+. +.. ..+.+.++.+. ...
T Consensus 19 ~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~ 98 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTYT 98 (266)
T ss_dssp EEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHHHCC
T ss_pred eeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhhccC
Confidence 367889999999997655 355566777788876665554 599999998643 321 12344444443 114
Q ss_pred CCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 525 WGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 525 wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
-++.||+.+.+....+.-...+ ....-++.|+||||-+-+
T Consensus 99 ~~G~T~~~~AL~~a~~~l~~~~-~r~~~~~~iIllTDG~~~ 138 (266)
T 4hqo_A 99 PYGTTSMTAALDEVQKHLNDRV-NREKAIQLVILMTDGVPN 138 (266)
T ss_dssp CCSCCCHHHHHHHHHHHHHTTC-SCTTSEEEEEEEECSCCS
T ss_pred CCCCCCHHHHHHHHHHHHhhcc-ccCCCCeEEEEEccCCCC
Confidence 5779999999988766655543 334568999999998765
No 11
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.51 E-value=0.00073 Score=64.48 Aligned_cols=108 Identities=9% Similarity=0.096 Sum_probs=71.4
Q ss_pred cceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCCCC--eEEeeCCCCceee-cC-CCCHHHHHHHHHhCCC-CC-Cc
Q 043578 457 RNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPWKG--KLITFSENPELQV-LE-GDSLRSRTDFVTEMEW-GM-NT 529 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf~~--~fITFS~~P~l~~-i~-g~~L~ekv~~i~~~~w-g~-nT 529 (639)
-+.+.|+|+||||.+..++.+.. +.-++..+.-+|=.. .+|+|+++++.+. +. -.+..+-.+.+.++.+ |+ .|
T Consensus 14 ~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~~T 93 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVA 93 (202)
T ss_dssp EEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSCC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCcCCCCCcC
Confidence 46788999999999866655443 445566666444333 5699999998643 32 2455555666777776 44 39
Q ss_pred cHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 530 DFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 530 n~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
|+.+.+...++..-..+ ....-+|.|+|+||-+-+
T Consensus 94 ~~~~aL~~a~~~~~~~~-~r~~~~~~iillTDG~~~ 128 (202)
T 1ijb_A 94 STSEVLKYTLFQIFSKI-DRPEASRIALLLMASQEP 128 (202)
T ss_dssp CHHHHHHHHHHHTSSSC-SCTTSEEEEEEEECCCCC
T ss_pred cHHHHHHHHHHHHhccC-CCCCCCeEEEEEccCCCC
Confidence 99999876654322222 123578999999998754
No 12
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.48 E-value=0.00046 Score=69.28 Aligned_cols=109 Identities=12% Similarity=-0.033 Sum_probs=75.2
Q ss_pred CcceEEEEcCCCCCCCChh-H-HHHHHHHHHhhcccCC--CCCeEEeeCCCCcee-ecC-CC-----CHHHHHHHHHhC-
Q 043578 456 LRNCMAICDVSGSMHGTPM-E-VSVALGVLVSELSEEP--WKGKLITFSENPELQ-VLE-GD-----SLRSRTDFVTEM- 523 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm-~-vaiaLgLl~aE~~~~p--f~~~fITFS~~P~l~-~i~-g~-----~L~ekv~~i~~~- 523 (639)
--|.+.|+|+||||.+..+ + +--++.-++..+...+ -+=.+|+|+++++.+ .+. .. .+.+.++.+...
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~~ 100 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLSTN 100 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHTT
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhcc
Confidence 3467899999999998655 4 3445556666666543 333689999999754 343 21 266667777642
Q ss_pred CCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcc
Q 043578 524 EWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 524 ~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD 565 (639)
.-++.||+.+.+...+......+-.+ .-++.|+||||-+-+
T Consensus 101 ~~~G~T~~~~aL~~a~~~l~~~~~r~-~~~~~iillTDG~~~ 141 (281)
T 4hqf_A 101 LPYGKTSLTDALLQVRKHLNDRINRE-NANQLVVILTDGIPD 141 (281)
T ss_dssp GGGCSCCHHHHHHHHHHHHHTSCCCT-TCEEEEEEEESSCCS
T ss_pred CCCCCccHHHHHHHHHHHHHhccCCC-CCCEEEEEEecCCCC
Confidence 23678999999988877665544333 458999999998754
No 13
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.38 E-value=0.00036 Score=76.21 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=91.8
Q ss_pred CCCcceEEEEcCCCCCC--CChhHHHHHH-HHHHhhcccCCCCCeEEeeCCCCceeec--------CCCCHHHHHHHHHh
Q 043578 454 GKLRNCMAICDVSGSMH--GTPMEVSVAL-GVLVSELSEEPWKGKLITFSENPELQVL--------EGDSLRSRTDFVTE 522 (639)
Q Consensus 454 G~l~n~iav~DvSGSM~--g~Pm~vaiaL-gLl~aE~~~~pf~~~fITFS~~P~l~~i--------~g~~L~ekv~~i~~ 522 (639)
+.--+.+.|+|+||||. |..|+.+... ..++..+..+- +=.+|+|+++++.+.= ...+..+-.+.|.+
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~d-rv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~ 153 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGA-FFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGR 153 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTC-EEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHT
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCC-EEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHc
Confidence 34457889999999999 8888876544 44455554332 3358999999986532 12355566667788
Q ss_pred CCCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcccCCCCeEEeccC
Q 043578 523 MEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGF 602 (639)
Q Consensus 523 ~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt~~~~GvaLVSGf 602 (639)
...++.||+...+...++..... ..-++.||+|||-+-+.. ......+.++. ....++|.. +.+=+++
T Consensus 154 L~~~GgT~l~~aL~~A~~~l~~~----~~~~~~IILLTDG~~~~~---~~~~l~~~~~a-~~~~i~i~t----iGiG~~~ 221 (464)
T 4fx5_A 154 LHANGGTAMGRWLAQAGRIFDTA----PSAIKHAILLTDGKDESE---TPADLARAIQS-SIGNFTADC----RGIGEDW 221 (464)
T ss_dssp CCCCSCCCHHHHHHHHHHHHTTC----TTSEEEEEEEESSCCTTS---CHHHHHHHHHH-HTTTCEEEE----EEESSSS
T ss_pred CCCCCCCcHHHHHHHHHHHHhcC----CCCCCEEEEEcCCCCCCC---ChHHHHHHHHH-hcCCCeEEE----EEeCCcc
Confidence 88899999999998887766542 244789999999874421 11222232222 122233311 2222456
Q ss_pred CHHHHHHHHc
Q 043578 603 SKNMLTLFLD 612 (639)
Q Consensus 603 S~~llK~fLe 612 (639)
....|+.+-+
T Consensus 222 d~~~L~~IA~ 231 (464)
T 4fx5_A 222 EPKELRKIAD 231 (464)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7778877765
No 14
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.33 E-value=0.00013 Score=68.57 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCCeEEeeCCCCceeec-C----CCCHHHHHHHHHhCCC-CCCcc
Q 043578 458 NCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKGKLITFSENPELQVL-E----GDSLRSRTDFVTEMEW-GMNTD 530 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~~fITFS~~P~l~~i-~----g~~L~ekv~~i~~~~w-g~nTn 530 (639)
+.+.|+|+||||.+..++.+. ++.-++..+..+..+=.+|+|+++++.+.- . -..+.+. +.++.+ ++.||
T Consensus 7 div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~~~~~~~~~~---i~~l~~~~g~T~ 83 (194)
T 1mf7_A 7 DIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSL---VKPITQLLGRTH 83 (194)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHHHSCCHHHH---HTTCCCCCSCBC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCcCCHHHHHHH---HHhCcCCCCCch
Confidence 678899999999986555443 344555666622345578999999985422 1 1344444 455554 88999
Q ss_pred HHHHHHHHHHHHHh--CCCCcccccceEEEEecCCcc
Q 043578 531 FQKVFDLILQVAVN--GNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 531 ~~aVFdlIL~~Av~--~~l~~e~M~k~lfVfSDMeFD 565 (639)
+...++..++.... ++- ..+-++.|+|+||-+-+
T Consensus 84 ~~~aL~~a~~~l~~~~~~~-r~~~~~~iillTDG~~~ 119 (194)
T 1mf7_A 84 TATGIRKVVRELFNITNGA-RKNAFKILVVITDGEKF 119 (194)
T ss_dssp HHHHHHHHHHTTTSGGGTC-CTTSEEEEEEEESSCCB
T ss_pred HHHHHHHHHHHhcCcccCC-CCCCCeEEEEEcCCCCC
Confidence 99998877653211 121 23468899999998865
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.10 E-value=0.0032 Score=59.55 Aligned_cols=106 Identities=20% Similarity=0.179 Sum_probs=70.2
Q ss_pred cceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCC--eEEeeCCCCcee-ecC-CCCHHHHHHHHHhCCC-CC-Cc
Q 043578 457 RNCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKG--KLITFSENPELQ-VLE-GDSLRSRTDFVTEMEW-GM-NT 529 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~--~fITFS~~P~l~-~i~-g~~L~ekv~~i~~~~w-g~-nT 529 (639)
-+.+.|+|+||||.. ++.+. .+.-++..+..+|=.. .+|+|+++++.+ .+. ..+..+-.+.+.++.+ ++ .|
T Consensus 7 ~div~vlD~SgSm~~--~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~T 84 (200)
T 1v7p_C 7 IDVVVVCDESNSIYP--WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLT 84 (200)
T ss_dssp EEEEEEEECCTTCCC--HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCC
T ss_pred ccEEEEEECCCCccc--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHHhhhccCCCCC
Confidence 367889999999984 44433 3444555565444333 569999999854 333 3466666777777764 45 69
Q ss_pred cHHHHHHHHHHHHH--hCCCCcccccceEEEEecCCcc
Q 043578 530 DFQKVFDLILQVAV--NGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 530 n~~aVFdlIL~~Av--~~~l~~e~M~k~lfVfSDMeFD 565 (639)
|+.+.+...++..- .++- ....++.|+++||-+-+
T Consensus 85 ~~~~al~~a~~~~~~~~~g~-r~~~~~~ivllTDG~~~ 121 (200)
T 1v7p_C 85 NTFGAIQYARKYAYSAASGG-RRSATKVMVVVTDGESH 121 (200)
T ss_dssp CHHHHHHHHHHHTTSGGGTC-CTTSEEEEEEEESSCCS
T ss_pred cHHHHHHHHHHhhcccccCC-CCCCCeEEEEEccCCCC
Confidence 99999988776421 1121 23678999999998743
No 16
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.06 E-value=0.00025 Score=66.41 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=66.3
Q ss_pred cceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCCCCeEEeeCCCCceeec-C----CCCHHHHHHHHHhCCCCCCcc
Q 043578 457 RNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPWKGKLITFSENPELQVL-E----GDSLRSRTDFVTEMEWGMNTD 530 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf~~~fITFS~~P~l~~i-~----g~~L~ekv~~i~~~~wg~nTn 530 (639)
-+.+.|+|+||||.+..+..... +.-++..+..+.-+=.+|+|+++++.+.- . -..+.+.++.+. ..++.||
T Consensus 10 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~i~~l~--~~~g~T~ 87 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVH--QLQGFTY 87 (198)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHHHHHCSSGGGGGTTCC--CCCSCBC
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCccCCHHHHHHHHhcCc--CCCCCch
Confidence 36788999999999865544333 33445555533344478999999875422 1 134444444332 2577999
Q ss_pred HHHHHHHHHHHH-Hh-CCCCcccccceEEEEecCCcc
Q 043578 531 FQKVFDLILQVA-VN-GNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 531 ~~aVFdlIL~~A-v~-~~l~~e~M~k~lfVfSDMeFD 565 (639)
+...+...++.. .. ++- ...-++.|+||||-+-+
T Consensus 88 ~~~al~~a~~~l~~~~~~~-r~~~~~~iillTDG~~~ 123 (198)
T 1n3y_A 88 TATAIQNVVHRLFHASYGA-RRDAAKILIVITDGKKE 123 (198)
T ss_dssp HHHHHHHHHTTTTSGGGTC-CTTSEEEEEEEESSCCB
T ss_pred HHHHHHHHHHHHhCcccCC-CCCCceEEEEECCCCCC
Confidence 999987766322 11 111 13468899999998865
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.04 E-value=0.0024 Score=61.08 Aligned_cols=106 Identities=18% Similarity=0.132 Sum_probs=69.3
Q ss_pred cceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCC--CCCeEEeeCCCCceee-cC-CCCHHHHHHHHHhCCC-CC-Cc
Q 043578 457 RNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEP--WKGKLITFSENPELQV-LE-GDSLRSRTDFVTEMEW-GM-NT 529 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~p--f~~~fITFS~~P~l~~-i~-g~~L~ekv~~i~~~~w-g~-nT 529 (639)
-+.+.|+|+||||. +++.+.. +.-++..+.-.| -+=.+|+|++++..+. +. ..+..+-++.+..+.. |+ .|
T Consensus 8 ~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~T 85 (213)
T 1pt6_A 8 LDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQT 85 (213)
T ss_dssp EEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSC
T ss_pred ccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHHhccCCCCCcc
Confidence 36788999999999 4555443 344455554223 3346799999998543 32 3466666777777653 55 69
Q ss_pred cHHHHHHHHHHHHHh--CCCCcccccceEEEEecCCcc
Q 043578 530 DFQKVFDLILQVAVN--GNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 530 n~~aVFdlIL~~Av~--~~l~~e~M~k~lfVfSDMeFD 565 (639)
|+...+...++..-. ++ ....-++.|+++||-+-+
T Consensus 86 ~~~~aL~~a~~~l~~~~~~-~r~~~~~~iillTDG~~~ 122 (213)
T 1pt6_A 86 MTALGTDTARKEAFTEARG-ARRGVKKVMVIVTDGESH 122 (213)
T ss_dssp CHHHHHHHHHHTTTSGGGT-CCTTCEEEEEEEESSCCS
T ss_pred cHHHHHHHHHHHhcCcccC-CCCCCCeEEEEEcCCCCC
Confidence 999988776653211 11 224678999999998643
No 18
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.02 E-value=0.0061 Score=68.62 Aligned_cols=155 Identities=13% Similarity=0.072 Sum_probs=99.6
Q ss_pred cceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCC--eEEeeCCCCceeecCC----CCHHHHHHHHHhCC-----
Q 043578 457 RNCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKG--KLITFSENPELQVLEG----DSLRSRTDFVTEME----- 524 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~--~fITFS~~P~l~~i~g----~~L~ekv~~i~~~~----- 524 (639)
-|.+.|+|+||||.+..++.+. ++.-++..+...+-+. .+|+|++++..+.--. .+..+-.+.|.++.
T Consensus 244 ~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~ 323 (741)
T 3hrz_D 244 MNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK 323 (741)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGGS
T ss_pred eeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhccccccc
Confidence 4678899999999987666554 3445566666555443 7899999998654322 25555666677777
Q ss_pred CCCCccHHHHHHHHHHHHH----hCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCc-ccCCCCeEEe
Q 043578 525 WGMNTDFQKVFDLILQVAV----NGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPV-LGTQKGVALV 599 (639)
Q Consensus 525 wg~nTn~~aVFdlIL~~Av----~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PV-t~~~~GvaLV 599 (639)
-++.||+.+.++..++... ...-..++-++.|++|||-+-+... .+...-+.|+....-..+. ...+.||.+.
T Consensus 324 ~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~--~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~ 401 (741)
T 3hrz_D 324 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--DPITVIDEIRDLLYIGKDRKNPREDYLDVY 401 (741)
T ss_dssp SSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS--CTHHHHHHHHHHTTCSSCTTCCCGGGEEEE
T ss_pred CCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC--CchHHHHHHHHHhhcccccccccccCeeEE
Confidence 5889999999988887762 1122335678899999999877543 2344444555443322233 2344565443
Q ss_pred c-c----CCHHHHHHHHcC
Q 043578 600 S-G----FSKNMLTLFLDN 613 (639)
Q Consensus 600 S-G----fS~~llK~fLe~ 613 (639)
. | +....|+.+-+.
T Consensus 402 ~igvG~~~~~~~L~~ia~~ 420 (741)
T 3hrz_D 402 VFGVGPLVNQVNINALASK 420 (741)
T ss_dssp EEECSSSCCHHHHHHHSCC
T ss_pred EEeCCCcCCHHHHHHHhcC
Confidence 2 2 567778877763
No 19
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.00 E-value=0.0029 Score=60.96 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=69.5
Q ss_pred CcceEEEEcCCCCCCCChhHHHHH-HHHHHhhccc--CCCCCeEEeeCCCCceee-cC-CCCHHHHHHHHHhCCC-CC-C
Q 043578 456 LRNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSE--EPWKGKLITFSENPELQV-LE-GDSLRSRTDFVTEMEW-GM-N 528 (639)
Q Consensus 456 l~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~--~pf~~~fITFS~~P~l~~-i~-g~~L~ekv~~i~~~~w-g~-n 528 (639)
--+.+.|+|+||||.. ++.+.. +.-++..+.. +--+=.+|+|+++++.+. +. -.+..+-++.+..+.+ |+ .
T Consensus 22 ~~div~vlD~SgSM~~--~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~gG~~ 99 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP--WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQ 99 (223)
T ss_dssp CEEEEEEEECSTTCCC--HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSS
T ss_pred cceEEEEEECCCChhh--HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHHHHHHHHhhhccCCCC
Confidence 3567889999999994 554433 4445555542 234446799999998543 32 3466666677777654 55 6
Q ss_pred ccHHHHHHHHHHHHHh--CCCCcccccceEEEEecCCcc
Q 043578 529 TDFQKVFDLILQVAVN--GNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 529 Tn~~aVFdlIL~~Av~--~~l~~e~M~k~lfVfSDMeFD 565 (639)
||+...++..++..-. ++ ....-++.|++|||-+-+
T Consensus 100 T~~~~aL~~a~~~l~~~~~~-~~~~~~~~iillTDG~~~ 137 (223)
T 2b2x_A 100 TMTALGIDTARKEAFTEARG-ARRGVKKVMVIVTDGESH 137 (223)
T ss_dssp CCHHHHHHHHHHTTSSGGGT-CCTTSEEEEEEEESSCCT
T ss_pred ccHHHHHHHHHHHhcCcccC-CCCCCCeEEEEEcCCCCC
Confidence 9999998776653211 11 224578999999997643
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.00 E-value=0.0019 Score=69.24 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=90.6
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCCCC--eEEeeCCCCceee----cCCCCHHHHHHHHHhCCC-----
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPWKG--KLITFSENPELQV----LEGDSLRSRTDFVTEMEW----- 525 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf~~--~fITFS~~P~l~~----i~g~~L~ekv~~i~~~~w----- 525 (639)
+.+.|+|+||||.+..++.+.. +.-++.++...+=.. .+|+|+.+++.+. ....+..+-.+.+.....
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 82 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKL 82 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGSCC
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccccc
Confidence 4678999999999877776654 455556655444333 5699999998765 222334444445555553
Q ss_pred CCCccHHHHHHHHHHHHHh--CCC--CcccccceEEEEecCCcccccCCCCchhHHHHHHhcCCCCCcc-cCCCCeEEec
Q 043578 526 GMNTDFQKVFDLILQVAVN--GNL--KPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVL-GTQKGVALVS 600 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~--~~l--~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k~s~~~PVt-~~~~GvaLVS 600 (639)
++.||+.+.+...++.... .+. ....-++.|+|+||=+-+... .....-+.+++...-..|.. ..+.|+.+.+
T Consensus 83 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 160 (497)
T 1rrk_A 83 KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--DPITVIDEIRDLLYIGKDRKNPREDYLDVYV 160 (497)
T ss_dssp TTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS--CTHHHHHHHHHHTTCSSCC-CCCGGGEEEEE
T ss_pred cCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC--ChhHHHHHHHHHhhhhcccccchhcCeeEEE
Confidence 5689999999988877621 111 114567899999999866432 12333344444311112221 1233444332
Q ss_pred -----cCCHHHHHHHHcC
Q 043578 601 -----GFSKNMLTLFLDN 613 (639)
Q Consensus 601 -----GfS~~llK~fLe~ 613 (639)
.+....|+.+-+.
T Consensus 161 igvG~~~~~~~L~~iA~~ 178 (497)
T 1rrk_A 161 FGVGPLVNQVNINALASK 178 (497)
T ss_dssp EECSSSCCHHHHHHHSCC
T ss_pred ecCCCccCHHHHHHHhcC
Confidence 2566788887763
No 21
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0047 Score=63.31 Aligned_cols=109 Identities=9% Similarity=0.060 Sum_probs=77.9
Q ss_pred CcceEEEEcCCCCCCC---Ch--hHHH-HHHHHHHhhccc-CCC-CCeEEeeCCC-CceeecCCCCHHHHHHHHHhCCCC
Q 043578 456 LRNCMAICDVSGSMHG---TP--MEVS-VALGVLVSELSE-EPW-KGKLITFSEN-PELQVLEGDSLRSRTDFVTEMEWG 526 (639)
Q Consensus 456 l~n~iav~DvSGSM~g---~P--m~va-iaLgLl~aE~~~-~pf-~~~fITFS~~-P~l~~i~g~~L~ekv~~i~~~~wg 526 (639)
|+.+|.|+|+||||.. .| ++.+ -++.+++..+.+ .|- +=.+|||+.. +.+..-...+...-...|.+...+
T Consensus 3 lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~~~ 82 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIE 82 (268)
T ss_dssp CEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCCCC
T ss_pred ceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcCcC
Confidence 6778999999999964 35 5544 356677776643 342 2267999765 554332356777788888999999
Q ss_pred CCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCccc
Q 043578 527 MNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQ 566 (639)
Q Consensus 527 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~ 566 (639)
+.|++.....+-+..++... ...-.+||+||+|-.|+.
T Consensus 83 G~T~l~~gL~~A~~aLk~~~--~k~~~~rIIlf~ds~~~~ 120 (268)
T 4b4t_W 83 GKLHMATALQIAQLTLKHRQ--NKVQHQRIVAFVCSPISD 120 (268)
T ss_dssp SCCCHHHHHHHHHHHHHTCS--CTTSEEEEEEEECSCCSS
T ss_pred CCCChHHHHHHHHHHHHhcc--cCCCceEEEEEECCCCCC
Confidence 99999999988777766443 233478899999988774
No 22
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.91 E-value=0.00066 Score=63.57 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCCCCCeEEeeCCCCceee-cC----CCCHHHHHHHHHhCCCCCCccH
Q 043578 458 NCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEPWKGKLITFSENPELQV-LE----GDSLRSRTDFVTEMEWGMNTDF 531 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~pf~~~fITFS~~P~l~~-i~----g~~L~ekv~~i~~~~wg~nTn~ 531 (639)
+.+.|+|+||||.+..++-+. ++.-++..+.....+=.+|+||++++.+. +. -.++.+.++.+..+ ++.||+
T Consensus 4 divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~~~--~g~T~~ 81 (179)
T 1mjn_A 4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHM--LLLTNT 81 (179)
T ss_dssp EEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCC--CBCCCH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcccC--CCCChH
Confidence 567899999999986554332 34445555543334557899999998652 21 12344444444433 568999
Q ss_pred HHHHHHHHHHHH--hCCCCcccccceEEEEecCCcc
Q 043578 532 QKVFDLILQVAV--NGNLKPEQMIKRLFVFSDMEFD 565 (639)
Q Consensus 532 ~aVFdlIL~~Av--~~~l~~e~M~k~lfVfSDMeFD 565 (639)
.+.+...++..- .++- ....+|.|+++||-+-+
T Consensus 82 ~~aL~~a~~~~~~~~~g~-r~~~~~~iillTDG~~~ 116 (179)
T 1mjn_A 82 FGAINYVATEVFREELGA-RPDATKVLIIITDGEAT 116 (179)
T ss_dssp HHHHHHHHHHTSSGGGTC-CTTSEEEEEEEESSCCS
T ss_pred HHHHHHHHHHhcccccCC-CCCCCeEEEEEcCCCCC
Confidence 998877664221 1121 23578999999998743
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=96.83 E-value=0.0017 Score=70.03 Aligned_cols=111 Identities=11% Similarity=0.133 Sum_probs=74.3
Q ss_pred cceEEEEcCCCCCCCChhHHHHH-HHHHHhhccc--CCCCCeEEeeCCCCceeecCC----CCHHHHHHHHHhCCCC---
Q 043578 457 RNCMAICDVSGSMHGTPMEVSVA-LGVLVSELSE--EPWKGKLITFSENPELQVLEG----DSLRSRTDFVTEMEWG--- 526 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~--~pf~~~fITFS~~P~l~~i~g----~~L~ekv~~i~~~~wg--- 526 (639)
-+.+.|+|+||||.+..++.+.. +.-++..+.. +--+=.+|+|+++++.+.=-. .+..+-.+.+.++..+
T Consensus 10 ~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 89 (509)
T 2odp_A 10 LNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHE 89 (509)
T ss_dssp EEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGGT
T ss_pred eeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhcccccCC
Confidence 36788999999999877765543 4445555542 234446799999998643211 1556666667777664
Q ss_pred --CCccHHHHHHHHHHHHHhCC----C---CcccccceEEEEecCCcccc
Q 043578 527 --MNTDFQKVFDLILQVAVNGN----L---KPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 527 --~nTn~~aVFdlIL~~Av~~~----l---~~e~M~k~lfVfSDMeFD~a 567 (639)
+.||+.+.++..++.....+ . ..++.++.|+++||=+.+..
T Consensus 90 ~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~ 139 (509)
T 2odp_A 90 NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMG 139 (509)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSS
T ss_pred CCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCC
Confidence 78999999987766553321 1 01246788999999887643
No 24
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.83 E-value=0.0017 Score=61.81 Aligned_cols=108 Identities=8% Similarity=0.089 Sum_probs=71.5
Q ss_pred CCcceEEEEcCCCCCCCChhHHHH-HHHHHHhhcccCC--CCCeEEeeCCCCceee-cC-CCCHHHHHHHHHhCCC-CC-
Q 043578 455 KLRNCMAICDVSGSMHGTPMEVSV-ALGVLVSELSEEP--WKGKLITFSENPELQV-LE-GDSLRSRTDFVTEMEW-GM- 527 (639)
Q Consensus 455 ~l~n~iav~DvSGSM~g~Pm~vai-aLgLl~aE~~~~p--f~~~fITFS~~P~l~~-i~-g~~L~ekv~~i~~~~w-g~- 527 (639)
.--+.+.|+|+||||.+..++-+. ++.-++..+.-+| -+=.+|+||++++.+. +. -.+..+-.+.|.++.+ |+
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~ 99 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIRYQGGN 99 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCCCCCCS
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCcCCCCC
Confidence 445788899999999986555443 3455666676444 3336899999999653 32 3466666677777776 44
Q ss_pred CccHHHHHHHHHHHHH--hCCCCcccccceEEEEecCC
Q 043578 528 NTDFQKVFDLILQVAV--NGNLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 528 nTn~~aVFdlIL~~Av--~~~l~~e~M~k~lfVfSDMe 563 (639)
.||+...++..++..- .++- ..+.+|.|+++||-+
T Consensus 100 ~T~~~~aL~~a~~~l~~~~~g~-r~~~~~~iillTDG~ 136 (199)
T 3zqk_A 100 RTNTGLALRYLSDHSFLVSQGD-REQAPNLVYMVTGNP 136 (199)
T ss_dssp CCCHHHHHHHCCCCCTCGGGTC-CTTSCEEEEEEECSC
T ss_pred cChHHHHHHHHHHHhhCcccCC-CCCCCeEEEEEeCCC
Confidence 4999998866544211 1111 235689999999975
No 25
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.69 E-value=0.063 Score=54.36 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=61.6
Q ss_pred HHHHHHhhcCCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCC--eEEeeCCCC--ceeec---CCCCHHHHH
Q 043578 445 RIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKG--KLITFSENP--ELQVL---EGDSLRSRT 517 (639)
Q Consensus 445 ~lvd~l~~~G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~--~fITFS~~P--~l~~i---~g~~L~ekv 517 (639)
..||.+-+... -+|+.++|+||||.+.=-.+--++--++..+...+-++ .+|||+.+| ....+ .... +..
T Consensus 124 ~~~~~l~e~~~-~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~--~~~ 200 (242)
T 3rag_A 124 QVVEKLEDEVA-LHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV--NVA 200 (242)
T ss_dssp HHHHHHHHHSC-EEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC--CHH
T ss_pred hhhhhhcccCC-CCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH--HHH
Confidence 35666555444 57899999999998642223334444455554444455 579999998 33333 3332 444
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHH
Q 043578 518 DFVTEMEWGMNTDFQKVFDLILQVA 542 (639)
Q Consensus 518 ~~i~~~~wg~nTn~~aVFdlIL~~A 542 (639)
..+.....|+.|.+-+..+..++..
T Consensus 201 ~~l~~L~agG~Tplg~AL~~A~~~~ 225 (242)
T 3rag_A 201 ALEAELVARGGTPTGPAIDHAADLL 225 (242)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcHHHHHHHHHHHH
Confidence 5667778899999999987766654
No 26
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=93.64 E-value=0.4 Score=46.09 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=66.9
Q ss_pred CcceEEEEcCCCCCCC---Ch--hHHHHHH-HHHHhhc-ccCC-CCCeEEeeCCC-CceeecCCCCHHHHHHHHHhCCCC
Q 043578 456 LRNCMAICDVSGSMHG---TP--MEVSVAL-GVLVSEL-SEEP-WKGKLITFSEN-PELQVLEGDSLRSRTDFVTEMEWG 526 (639)
Q Consensus 456 l~n~iav~DvSGSM~g---~P--m~vaiaL-gLl~aE~-~~~p-f~~~fITFS~~-P~l~~i~g~~L~ekv~~i~~~~wg 526 (639)
++..+.++|+||||.. .| ++.+... ..++.+. ...| =+=.+|+|... +.++.=...+...-...+....-+
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~~ 81 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVR 81 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCCC
T ss_pred ceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCCC
Confidence 5678899999999974 23 5555443 3334332 2222 23379999984 776532234566666667777778
Q ss_pred CCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCc
Q 043578 527 MNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 527 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeF 564 (639)
+.|++.....+.........-+ .-.+||+||.+-.+
T Consensus 82 g~t~l~~aL~~A~~~l~~~~~~--~~~~riiil~~~~~ 117 (192)
T 2x5n_A 82 GNAKFGDGIQIAQLALKHRENK--IQRQRIVAFVGSPI 117 (192)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCT--TSEEEEEEEECSCC
T ss_pred CCchHHHHHHHHHHHHHhcccc--CCCceEEEEEECCC
Confidence 8999999998877766653311 12346666654333
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=93.02 E-value=0.086 Score=63.35 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCCCCChhHHHHH-HHHHHhhcccCCCCCeEEeeCCCCceee-c----CCCCHHHHHHHHHhCCCCCCccH
Q 043578 458 NCMAICDVSGSMHGTPMEVSVA-LGVLVSELSEEPWKGKLITFSENPELQV-L----EGDSLRSRTDFVTEMEWGMNTDF 531 (639)
Q Consensus 458 n~iav~DvSGSM~g~Pm~vaia-LgLl~aE~~~~pf~~~fITFS~~P~l~~-i----~g~~L~ekv~~i~~~~wg~nTn~ 531 (639)
+.+.|+|+||||.+..++.+.. +.-++..+..+--+=.+|+||++++.+. + +-..+.+.++.+... ++.|++
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~~~--gG~T~~ 209 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQL--QGFTYT 209 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCCCC--CSCBCH
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhhcc--cCCChH
Confidence 5688999999999876655443 3445555553224447999999998653 2 234666666655443 678999
Q ss_pred HHHHHHHHHHHHh-CCCCcccccceEEEEecCCc
Q 043578 532 QKVFDLILQVAVN-GNLKPEQMIKRLFVFSDMEF 564 (639)
Q Consensus 532 ~aVFdlIL~~Av~-~~l~~e~M~k~lfVfSDMeF 564 (639)
....+..++..-. .+-...+-+|.|+|+||-+-
T Consensus 210 g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~ 243 (1095)
T 3k6s_A 210 ATAIQNVVHRLFHASYGARRDAAKILIVITDGKK 243 (1095)
T ss_dssp HHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCC
T ss_pred HHHHHHHHHhhccccccCCCCCCeEEEEEeCCCc
Confidence 9888766553321 11122456899999999886
No 28
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=88.84 E-value=1.6 Score=48.46 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred cCCCcceEEEEcCCCCCCC------ChhHHHHHH-HHHHhh--cccCCCCCeEEeeCCCCc---------------eeec
Q 043578 453 KGKLRNCMAICDVSGSMHG------TPMEVSVAL-GVLVSE--LSEEPWKGKLITFSENPE---------------LQVL 508 (639)
Q Consensus 453 ~G~l~n~iav~DvSGSM~g------~Pm~vaiaL-gLl~aE--~~~~pf~~~fITFS~~P~---------------l~~i 508 (639)
+|.-+..+.++||||||.. ++++.|.-. ..++.. .+.+-=.=.+|+|..+.. +..+
T Consensus 4 ~~~ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l 83 (565)
T 1jey_B 4 SGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHL 83 (565)
T ss_dssp --CCEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEE
T ss_pred CCCceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecC
Confidence 3555677888899999963 467666544 334443 233323337899987652 1122
Q ss_pred CCCCHHHHHHHHHh-CCCC-CCccHHHHHHHHHHHHHhCCCCcccc-cceEEEEecCCccc
Q 043578 509 EGDSLRSRTDFVTE-MEWG-MNTDFQKVFDLILQVAVNGNLKPEQM-IKRLFVFSDMEFDQ 566 (639)
Q Consensus 509 ~g~~L~ekv~~i~~-~~wg-~nTn~~aVFdlIL~~Av~~~l~~e~M-~k~lfVfSDMeFD~ 566 (639)
+..-.+.++.+.. ..-| ..|+|..+..+-..+..+.-.+ ... -|+||+|||-++..
T Consensus 84 -~~~~~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~-~k~~~krIiLlTDg~~~~ 142 (565)
T 1jey_B 84 -MLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIG-KKFEKRHIEIFTDLSSRF 142 (565)
T ss_dssp -ECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSS-SCCSEEEEEEECCCCSCC
T ss_pred -CCCCHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhc-ccccccEEEEEeCCCCCC
Confidence 1222345555655 3333 5899988876655555443111 012 38999999998774
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=88.25 E-value=1.9 Score=50.95 Aligned_cols=36 Identities=17% Similarity=-0.026 Sum_probs=25.7
Q ss_pred CCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCC
Q 043578 526 GMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMe 563 (639)
++.|++...+.+-+++..... ...-.|.|+++||-+
T Consensus 354 ~GGT~i~~AL~~A~~lL~~~~--~~~~~kvIILLTDG~ 389 (893)
T 2ww8_A 354 FGATFTQKALMKADEILTQQA--RQNSQKVIFHITDGV 389 (893)
T ss_dssp GCSCCHHHHHHHHHHHHHHHS--CSSSEEEEEEEESSC
T ss_pred CCCChHHHHHHHHHHHHHhhc--ccCCCeEEEEEcCCC
Confidence 568999999987776664321 123468899999975
No 30
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=71.39 E-value=7 Score=38.61 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=64.5
Q ss_pred eEEEEcCCCCCCCChh---HHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecC-CCCHHHHHHHHHhCCCCCCcc-HHH
Q 043578 459 CMAICDVSGSMHGTPM---EVSVALGVLVSELSEEPWKGKLITFSENPELQVLE-GDSLRSRTDFVTEMEWGMNTD-FQK 533 (639)
Q Consensus 459 ~iav~DvSGSM~g~Pm---~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~-g~~L~ekv~~i~~~~wg~nTn-~~a 533 (639)
..-|+|.||||...=- +....|.-=+.+++ .-|+=.|.+|-...-.+.++ -.+..+=.+.+.+..-++|-| =++
T Consensus 6 l~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~-~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~~D~PE~ 84 (212)
T 2iue_A 6 LYFLMGLSGSAQGHLSNVQTLGSDLLKALNEIS-RSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGKLATPKG 84 (212)
T ss_dssp EEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHC-SCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCCSSSSBC
T ss_pred EEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhC-cCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCCCCCCch
Confidence 4568999999997421 12222222223333 34666788898775444444 345555666666676655544 478
Q ss_pred HHHHHHHHHHh---CCCCcccccceEEEEecCCcccc
Q 043578 534 VFDLILQVAVN---GNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 534 VFdlIL~~Av~---~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
+|+.|+..++. -+-.+ =-+-|++++|=.|..+
T Consensus 85 g~dal~qa~~c~~~i~Wr~--a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 85 QLDAVVQVAICLGEIGWRN--GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp HHHHHHHHHHCHHHHTCCS--SEEEEEEECSSCBCCT
T ss_pred HHHHHHHHHHhhhhcccCC--ccEEEEEECcCCcccc
Confidence 89988888864 12333 2355777889988665
No 31
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=63.15 E-value=18 Score=40.49 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=58.6
Q ss_pred cceEEEEcCCCCCCC-------ChhHHHHHHHHHHhhc---ccCCCCCeEEeeCCCCc-----------eeecCCCCHHH
Q 043578 457 RNCMAICDVSGSMHG-------TPMEVSVALGVLVSEL---SEEPWKGKLITFSENPE-----------LQVLEGDSLRS 515 (639)
Q Consensus 457 ~n~iav~DvSGSM~g-------~Pm~vaiaLgLl~aE~---~~~pf~~~fITFS~~P~-----------l~~i~g~~L~e 515 (639)
+..|.++|||+||.. .+++.|.-...-+-.. +.+--.=.+|.|..... +..+.--+ .+
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~-~~ 114 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPG-AK 114 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCC-HH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCC-HH
Confidence 457777899999963 3677776543333221 22212236788887762 22332112 22
Q ss_pred HHHHHHhC-------------CCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCC
Q 043578 516 RTDFVTEM-------------EWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDME 563 (639)
Q Consensus 516 kv~~i~~~-------------~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMe 563 (639)
-++.+... .-+..|+|-.++-+-..+-.+.+-+. --|+||+|||-+
T Consensus 115 ~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~--~~k~IiL~TDg~ 173 (609)
T 1jey_A 115 RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKM--SHKRIMLFTNED 173 (609)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCE--EEEEEEEEESCS
T ss_pred HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhh--cCCEEEEEcCCC
Confidence 33333322 11457999999977666665542221 258999999954
No 32
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=58.54 E-value=11 Score=41.42 Aligned_cols=138 Identities=22% Similarity=0.238 Sum_probs=78.8
Q ss_pred ccchHHHHhhhcCCCCcchHHHHHHHHHHHHHhhcCCCcceEEEEcCCCCCCCC---hhHHHHHHHHHHhhcccCCCCCe
Q 043578 419 ALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGT---PMEVSVALGVLVSELSEEPWKGK 495 (639)
Q Consensus 419 aLlPheIi~~~~~~~~~~~vae~QWk~lvd~l~~~G~l~n~iav~DvSGSM~g~---Pm~vaiaLgLl~aE~~~~pf~~~ 495 (639)
.+.|..|--.++-| +......+.+. ..+.-=+-.-+.|+||||..- =-..+..|.--++++++ -|+=.
T Consensus 93 Qi~PQ~v~l~LRpG--~~~~f~v~~~~------~~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~-~~riG 163 (454)
T 3vi3_B 93 QIQPQQLVLRLRSG--EPQTFTLKFKR------AEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITS-DFRIG 163 (454)
T ss_dssp CEECCEEEEEECTT--CCCCEEEEEEC------CSCCCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCS-SEEEE
T ss_pred eecCceEEEEecCC--CeEEEEEEEec------CCCCceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCC-CeEEE
Confidence 46676666666655 21111111111 112233567799999999851 22223334444445543 57777
Q ss_pred EEeeCCCCce---------------------------eecC-CCCHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHH---
Q 043578 496 LITFSENPEL---------------------------QVLE-GDSLRSRTDFVTEMEWGMNTD-FQKVFDLILQVAV--- 543 (639)
Q Consensus 496 fITFS~~P~l---------------------------~~i~-g~~L~ekv~~i~~~~wg~nTn-~~aVFdlIL~~Av--- 543 (639)
|.+|-..|-+ |.++ -.+..+=.+.+.+..-++|-| -+++||.|+.+|+
T Consensus 164 fGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~ 243 (454)
T 3vi3_B 164 FGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGS 243 (454)
T ss_dssp EEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHH
T ss_pred EEEEeccccCCcccCChHHhcCCCcCccCCCCCcceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhcccc
Confidence 8888765321 2232 234555566677777777755 4889999999998
Q ss_pred hCCCCcccccceE-EEEecCCccccc
Q 043578 544 NGNLKPEQMIKRL-FVFSDMEFDQAS 568 (639)
Q Consensus 544 ~~~l~~e~M~k~l-fVfSDMeFD~a~ 568 (639)
+-+-.. -.|| ++++|--|.-|.
T Consensus 244 ~igWR~---a~rllV~~TDa~fH~ag 266 (454)
T 3vi3_B 244 LIGWRN---VTRLLVFSTDAGFHFAG 266 (454)
T ss_dssp HHTCCS---SEEEEEEEESSCBCCTT
T ss_pred ccCCcc---ceEEEEEECCCCcCcCC
Confidence 234433 4444 557899888763
No 33
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=58.12 E-value=8.7 Score=44.13 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=66.5
Q ss_pred cceEEEEcCCCCCCCC---hhHHHHHHHHHHhhcccCCCCCeEEeeCCCCce----------------------------
Q 043578 457 RNCMAICDVSGSMHGT---PMEVSVALGVLVSELSEEPWKGKLITFSENPEL---------------------------- 505 (639)
Q Consensus 457 ~n~iav~DvSGSM~g~---Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l---------------------------- 505 (639)
=+-.-+.|+||||..- --..+..|.--++++++ -|+=.|.+|...|.+
T Consensus 112 vDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~-~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f 190 (690)
T 3fcs_B 112 VDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTS-NLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGY 190 (690)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCS-CEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSE
T ss_pred ccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCc-CceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccc
Confidence 3567899999999741 11112223333344443 477788888875421
Q ss_pred -eecC-CCCHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHH---hCCCCcccccceEEEEecCCcccc
Q 043578 506 -QVLE-GDSLRSRTDFVTEMEWGMNTD-FQKVFDLILQVAV---NGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 506 -~~i~-g~~L~ekv~~i~~~~wg~nTn-~~aVFdlIL~~Av---~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
|.++ ..+..+=.+.+.+..-.+|-| -+++||.|+.+|+ +-+-.+ +--+-|++++|--|..|
T Consensus 191 ~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~-~a~rllv~~TDa~~H~a 257 (690)
T 3fcs_B 191 KHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN-DASHLLVFTTDAKTHIA 257 (690)
T ss_dssp EEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SSEEEEEEEESSCBCCT
T ss_pred eeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCC-CceEEEEEECCCccccC
Confidence 2232 345555566666666656654 4789999999996 334443 23456677899999865
No 34
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=56.95 E-value=6.7 Score=45.06 Aligned_cols=108 Identities=20% Similarity=0.150 Sum_probs=65.5
Q ss_pred cceEEEEcCCCCCCC---ChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCce----------------------------
Q 043578 457 RNCMAICDVSGSMHG---TPMEVSVALGVLVSELSEEPWKGKLITFSENPEL---------------------------- 505 (639)
Q Consensus 457 ~n~iav~DvSGSM~g---~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l---------------------------- 505 (639)
=+-..+.|+||||.. .--..+..|.--++++++ -|+=.|.+|...|.+
T Consensus 105 vDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~-~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~ 183 (687)
T 3k6s_B 105 IDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITE-SGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFR 183 (687)
T ss_dssp CEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCC-SCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCE
T ss_pred eeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCc-CcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccce
Confidence 356789999999974 111111222233344443 478888899874321
Q ss_pred eecC-CCCHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHH---hCCCCcccccceEEEEecCCcccc
Q 043578 506 QVLE-GDSLRSRTDFVTEMEWGMNTD-FQKVFDLILQVAV---NGNLKPEQMIKRLFVFSDMEFDQA 567 (639)
Q Consensus 506 ~~i~-g~~L~ekv~~i~~~~wg~nTn-~~aVFdlIL~~Av---~~~l~~e~M~k~lfVfSDMeFD~a 567 (639)
|.++ ..+..+=.+.+.+..-.+|-| -++.||.|+.+|+ +.+-.+ --+-|++++|--|..|
T Consensus 184 ~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~--a~rllV~~TDa~~H~a 248 (687)
T 3k6s_B 184 HVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN--VTRLLVFATDDGFHFA 248 (687)
T ss_dssp EEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS--SCCEEEEECSSCCCCT
T ss_pred eecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc--ceEEEEEECCCccccC
Confidence 2222 334455555666666666654 4789999999995 555554 3455666889888865
No 35
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=48.77 E-value=13 Score=41.36 Aligned_cols=140 Identities=23% Similarity=0.205 Sum_probs=76.9
Q ss_pred cccchHHHHhhhcCCCCcchHHHHHHHHHHHHHhhcCCCcceEEEEcCCCCCCCC---hhHHHHHHHHHHhhcccCCCCC
Q 043578 418 GALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGT---PMEVSVALGVLVSELSEEPWKG 494 (639)
Q Consensus 418 ~aLlPheIi~~~~~~~~~~~vae~QWk~lvd~l~~~G~l~n~iav~DvSGSM~g~---Pm~vaiaLgLl~aE~~~~pf~~ 494 (639)
-.+.|..|--.++-| +......+.+.- .+.==+-.-+.|+||||..- =-..+..|.--+++++ .-|+=
T Consensus 102 ~Qi~PQ~v~l~LRpG--~~~~f~v~~~~~------~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t-~~~Ri 172 (503)
T 3v4v_B 102 TQLAPQRVRVTLRPG--EPQQLQVRFLRA------EGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVT-HSVRI 172 (503)
T ss_dssp BCEECCEEEEECBTT--BCEEEEEEEECC------SSCCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTC-SCEEE
T ss_pred ceecCceEEEEecCC--CcEEEEEEEEcc------CCCceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhC-cCcEE
Confidence 356777776666655 222222111111 12233466799999999751 1111222333334443 35677
Q ss_pred eEEeeCCCCce----------------------------eecC-CCCHHHHHHHHHhCCCCCCccH-HHHHHHHHHHHH-
Q 043578 495 KLITFSENPEL----------------------------QVLE-GDSLRSRTDFVTEMEWGMNTDF-QKVFDLILQVAV- 543 (639)
Q Consensus 495 ~fITFS~~P~l----------------------------~~i~-g~~L~ekv~~i~~~~wg~nTn~-~aVFdlIL~~Av- 543 (639)
.|.+|-..|.+ |.++ -.+..+=.+.+.+..-.+|-|. +++||.|+.+|+
T Consensus 173 GfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC 252 (503)
T 3v4v_B 173 GFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALC 252 (503)
T ss_dssp EEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHC
T ss_pred eeeeecccccCCcccCCHHHhcCCCcCCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhc
Confidence 78888664321 1222 2344444455566666666554 889999999997
Q ss_pred --hCCCCcccccceEEEEecCCccccc
Q 043578 544 --NGNLKPEQMIKRLFVFSDMEFDQAS 568 (639)
Q Consensus 544 --~~~l~~e~M~k~lfVfSDMeFD~a~ 568 (639)
+-+-.. . -+-|++++|--|..|.
T Consensus 253 ~~~IgWR~-a-~rllV~~TDA~fH~ag 277 (503)
T 3v4v_B 253 QEQIGWRN-V-SRLLVFTSDDTFHTAG 277 (503)
T ss_dssp HHHHTCCS-S-EEEEEEEESSCBCCTT
T ss_pred ccccCCCc-c-eEEEEEECCCCcCcCC
Confidence 445554 2 2555667899888763
No 36
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=48.74 E-value=1e+02 Score=27.77 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=53.8
Q ss_pred HHHHHhhcCCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCC
Q 043578 446 IVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEW 525 (639)
Q Consensus 446 lvd~l~~~G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~w 525 (639)
+.+.+++... +..|+++|.-| |+|..+|+.+. .+.+.++.|.|-||.=-++.+..
T Consensus 52 i~~~i~~~~~-~gvliLtDl~G---GSp~n~a~~~~------------------~~~~~v~vi~GvNlpmlle~~~~--- 106 (142)
T 3bed_A 52 LAAILKEAGN-VPTLVLADLXG---GTPCNVAMMAM------------------GTYPQLRVVAGLNLAMAIEAAVS--- 106 (142)
T ss_dssp HHHHHHHHCS-CCEEEEESSTT---SHHHHHHHHHT------------------TTCTTEEEEESCCHHHHHHHHHC---
T ss_pred HHHHHHhcCC-CCEEEEEECCC---CHHHHHHHHHh------------------ccCCCEEEEeCCCHHHHHHHHHc---
Confidence 3344444456 78999999844 67999865432 12357888999999877777765
Q ss_pred CCCccHHHHHHHHHHHHHhC
Q 043578 526 GMNTDFQKVFDLILQVAVNG 545 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~ 545 (639)
.+.+++.+-+.+++.++++
T Consensus 107 -~~~~l~el~~~~~~~~~~~ 125 (142)
T 3bed_A 107 -PVENVDELAAYLTQIGQSA 125 (142)
T ss_dssp -CCCCHHHHHHHHHHHHHHT
T ss_pred -cCCCHHHHHHHHHHHhhHH
Confidence 4678999989999988876
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=46.34 E-value=25 Score=38.71 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=80.8
Q ss_pred cccchHHHHhhhcCCCCcchHHHHHHHHHHHHHhhcCCCcceEEEEcCCCCCCC---ChhHHHHHHHHHHhhcccCCCCC
Q 043578 418 GALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHG---TPMEVSVALGVLVSELSEEPWKG 494 (639)
Q Consensus 418 ~aLlPheIi~~~~~~~~~~~vae~QWk~lvd~l~~~G~l~n~iav~DvSGSM~g---~Pm~vaiaLgLl~aE~~~~pf~~ 494 (639)
-.+.|..+--.++-| +......+.+. ..+.==+-.-+.|+||||.. .=-..+..|.--++++++ -|+=
T Consensus 81 ~Qi~Pq~v~l~LRpG--~~~~f~v~~~~------~~~ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~-~~ri 151 (472)
T 3t3p_B 81 TQVSPQRIALRLRPD--DSKNFSIQVRQ------VEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTS-NLRI 151 (472)
T ss_dssp CCEECCEEEEEECTT--CEEEEEEEEEC------CSSCCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCS-CEEE
T ss_pred ccccCcEEEEEecCC--CcEEEEEEeec------CCCCCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCc-CcEE
Confidence 357777776667665 22111111111 11223356779999999985 122333444444455543 5777
Q ss_pred eEEeeCCCCce-----------------------------eecC-CCCHHHHHHHHHhCCCCCCccH-HHHHHHHHHHHH
Q 043578 495 KLITFSENPEL-----------------------------QVLE-GDSLRSRTDFVTEMEWGMNTDF-QKVFDLILQVAV 543 (639)
Q Consensus 495 ~fITFS~~P~l-----------------------------~~i~-g~~L~ekv~~i~~~~wg~nTn~-~aVFdlIL~~Av 543 (639)
.|.+|-..|.+ |.++ -.+..+=.+.+.+..-.+|-|. +++||.|+.+|+
T Consensus 152 GfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaav 231 (472)
T 3t3p_B 152 GFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATV 231 (472)
T ss_dssp EEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHH
T ss_pred EEEEeeccccCccccCChhhhhcCCCcccccCCCCCcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhc
Confidence 88888765431 1222 2344444555666666666554 889999999997
Q ss_pred ---hCCCCcccccceEEEEecCCccccc
Q 043578 544 ---NGNLKPEQMIKRLFVFSDMEFDQAS 568 (639)
Q Consensus 544 ---~~~l~~e~M~k~lfVfSDMeFD~a~ 568 (639)
+-+-.++ --+-|++++|--|..|.
T Consensus 232 C~~~igWR~~-a~rllV~~TDa~~H~ag 258 (472)
T 3t3p_B 232 CDEKIGWRND-ASHLLVFTTDAKTHIAL 258 (472)
T ss_dssp CHHHHTCCSS-SEEEEEEEESSCBCCTT
T ss_pred chhhcCCCCC-ceEEEEEECCCCcCcCC
Confidence 4444442 23456668899998763
No 38
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=45.26 E-value=1.3e+02 Score=26.80 Aligned_cols=79 Identities=13% Similarity=0.299 Sum_probs=55.1
Q ss_pred HHHHHHhhcCCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCC
Q 043578 445 RIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEME 524 (639)
Q Consensus 445 ~lvd~l~~~G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~ 524 (639)
.+.+.+++..+-+..|+++|.-| |+|..+|..+. .+++.++.|.|-||.=-++.+....
T Consensus 47 ~i~~~i~~~~~~~gvliLtDl~G---GSp~n~a~~~~------------------~~~~~v~vi~GvNlpmlle~~~~~~ 105 (135)
T 1pdo_A 47 KYNAQLAKLDTTKGVLFLVDTWG---GSPFNAASRIV------------------VDKEHYEVIAGVNIPMLVETLMARD 105 (135)
T ss_dssp HHHHHHTTSCCTTCEEEEESSTT---SHHHHHHHHHH------------------TTCTTEEEEESCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCEEEEEECCC---CCHHHHHHHHH------------------hccCCEEEEeCCCHHHHHHHHHhcc
Confidence 34455555555567999999844 67999865432 1245788899999886777665332
Q ss_pred CCCCccHHHHHHHHHHHHHhCC
Q 043578 525 WGMNTDFQKVFDLILQVAVNGN 546 (639)
Q Consensus 525 wg~nTn~~aVFdlIL~~Av~~~ 546 (639)
.+.+++.+-+.+++.++++=
T Consensus 106 --~~~~l~el~~~~~~~g~~~i 125 (135)
T 1pdo_A 106 --DDPSFDELVALAVETGREGV 125 (135)
T ss_dssp --TCCCHHHHHHHHHHHHHHTC
T ss_pred --cCCCHHHHHHHHHHHhhHHh
Confidence 35688999899999998764
No 39
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=31.12 E-value=16 Score=36.58 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=21.0
Q ss_pred eccCC-HHHHHHHHcCCCCCCHHHHH
Q 043578 599 VSGFS-KNMLTLFLDNEGVINPEQVM 623 (639)
Q Consensus 599 VSGfS-~~llK~fLe~~g~~~P~~vm 623 (639)
|+|+| +++||+|+|+++.++|.+.-
T Consensus 75 vcG~sAnnIfKLmte~d~~~dp~e~~ 100 (261)
T 4fbj_A 75 VSGLSAQNIFKLMTEGEHAVDPVEMA 100 (261)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cccccHHHHHHHHhcCCcccchhhhh
Confidence 57777 57999999999999998753
No 40
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=29.95 E-value=1.4e+02 Score=27.93 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHhhcCCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCC
Q 043578 446 IVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEW 525 (639)
Q Consensus 446 lvd~l~~~G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~w 525 (639)
+.+.+++....+..|++||.-| |+|..+|..+ . +.|.+..|.|-||.=-++.+. ..
T Consensus 67 ~~~~i~~~~~~~gVLiLtDl~G---GSP~n~a~~~----~---------------~~~~v~vItGvNLpMlle~~~-~~- 122 (159)
T 3mtq_A 67 VEALVARFPAQDELIVITDIFA---GSVNNEFVRF----L---------------SRPHFHLLSGLNLPLIIDLLI-SA- 122 (159)
T ss_dssp HHHHHHTSCTTSEEEEEESCTT---SHHHHHHHGG----G---------------GSTTEEEEECCCHHHHHHHHH-TT-
T ss_pred HHHHHHhcCCCCCEEEEEeCCC---CCHHHHHHHH----h---------------cCCCeEEEeCCCHHHHHHHHH-hh-
Confidence 3344444455677999999843 6788876432 1 135688899999998888876 22
Q ss_pred CCCccHHHHHHHHHHHHHhC
Q 043578 526 GMNTDFQKVFDLILQVAVNG 545 (639)
Q Consensus 526 g~nTn~~aVFdlIL~~Av~~ 545 (639)
...+++..-+.+++.++++
T Consensus 123 -~~~~l~el~~~~i~~g~~g 141 (159)
T 3mtq_A 123 -AEDNTEKLITEALTNAKES 141 (159)
T ss_dssp -TCCCHHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHhhhh
Confidence 3457888888888888764
No 41
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=24.50 E-value=3.4e+02 Score=24.60 Aligned_cols=77 Identities=14% Similarity=0.370 Sum_probs=54.2
Q ss_pred HHHHHHhhc-CCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhC
Q 043578 445 RIVDDLMQK-GKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEM 523 (639)
Q Consensus 445 ~lvd~l~~~-G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~ 523 (639)
.+.+.+++. .+-+..|++||.-| |+|..+|..| .+ ++.+..|.|-||.=-++.+...
T Consensus 49 ~i~~~i~~~~~~~~gvliLtDl~G---GSp~n~a~~l----~~---------------~~~v~vItGvNLpMlle~~~~r 106 (144)
T 3lfh_A 49 EVEKIIKEKLQEDKEIIIVVDLFG---GSPFNIALSM----MK---------------EYDVKVITGINMPMLVELLTSI 106 (144)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSSS---SHHHHHHHHH----HH---------------HHCCEEEESCCHHHHHHHHHST
T ss_pred HHHHHHHHhhCCCCcEEEEEeCCC---CCHHHHHHHH----hc---------------CCCEEEEeCCCHHHHHHHHHhc
Confidence 333444433 44567999999844 6899988665 11 2356788999998888877653
Q ss_pred CCCCCccHHHHHHHHHHHHHhCC
Q 043578 524 EWGMNTDFQKVFDLILQVAVNGN 546 (639)
Q Consensus 524 ~wg~nTn~~aVFdlIL~~Av~~~ 546 (639)
+ +.+++..-+.+++.++++=
T Consensus 107 ~---~~~l~el~~~~~~~g~~~I 126 (144)
T 3lfh_A 107 N---VYDTTELLENISKIGKDGI 126 (144)
T ss_dssp T---TSCHHHHHHHHHHHHHHTC
T ss_pred c---CCCHHHHHHHHHHHhchhh
Confidence 2 3489999999999998764
Done!