Query 043580
Match_columns 665
No_of_seqs 620 out of 3687
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 06:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.1E-88 1.1E-92 735.0 70.4 643 19-665 47-732 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7.7E-74 1.7E-78 623.9 66.2 600 6-619 70-720 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.1E-69 2.4E-74 577.1 57.7 485 117-665 84-569 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.5E-65 3.2E-70 545.9 55.9 518 55-585 367-907 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.2E-64 1.6E-68 533.0 58.3 541 74-660 353-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-63 3.7E-68 529.7 51.2 471 20-556 84-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-38 1.4E-42 352.0 67.5 619 21-651 225-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-37 6.3E-42 346.8 68.5 626 19-656 189-869 (899)
9 PRK11447 cellulose synthase su 100.0 3.2E-28 6.9E-33 272.3 64.9 615 23-652 28-739 (1157)
10 PRK11447 cellulose synthase su 100.0 7.4E-26 1.6E-30 253.3 62.0 593 20-625 59-749 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.3E-24 4.9E-29 229.8 62.8 594 34-654 55-741 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-24 4.2E-29 230.3 56.4 571 66-655 52-708 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.7E-21 3.6E-26 184.1 32.3 436 195-642 53-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.9E-21 4.1E-26 183.8 32.2 423 224-655 51-487 (966)
15 KOG2002 TPR-containing nuclear 99.9 6.2E-20 1.4E-24 182.9 42.7 535 26-585 165-743 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.3E-20 9.2E-25 194.5 41.4 253 397-654 307-572 (615)
17 KOG2002 TPR-containing nuclear 99.9 2E-18 4.3E-23 172.4 47.6 603 41-656 26-748 (1018)
18 PRK11788 tetratricopeptide rep 99.9 7.5E-20 1.6E-24 183.3 28.9 296 361-661 43-355 (389)
19 PRK15174 Vi polysaccharide exp 99.9 2.5E-18 5.5E-23 180.1 39.3 350 253-653 43-403 (656)
20 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-17 4.6E-22 174.1 42.2 253 366-625 307-577 (615)
21 PRK15174 Vi polysaccharide exp 99.8 1.4E-17 3E-22 174.6 38.1 294 355-656 78-384 (656)
22 PRK11788 tetratricopeptide rep 99.8 2.6E-18 5.7E-23 172.1 31.1 295 260-559 43-354 (389)
23 PRK10049 pgaA outer membrane p 99.8 4.1E-17 8.9E-22 175.0 41.6 398 224-655 18-458 (765)
24 KOG0495 HAT repeat protein [RN 99.8 2.3E-14 5E-19 137.3 53.4 605 37-664 265-889 (913)
25 PRK10049 pgaA outer membrane p 99.8 5.5E-17 1.2E-21 174.0 40.9 407 194-626 19-463 (765)
26 KOG2076 RNA polymerase III tra 99.8 9.3E-15 2E-19 145.6 50.0 626 20-650 136-892 (895)
27 KOG2003 TPR repeat-containing 99.8 1.7E-17 3.6E-22 151.6 26.6 457 166-639 212-709 (840)
28 PRK14574 hmsH outer membrane p 99.8 1E-15 2.3E-20 160.6 43.6 436 167-626 46-520 (822)
29 KOG4318 Bicoid mRNA stability 99.8 2.7E-15 5.8E-20 148.5 38.9 581 44-654 11-809 (1088)
30 PRK14574 hmsH outer membrane p 99.8 7.2E-15 1.6E-19 154.4 43.5 435 196-655 40-515 (822)
31 KOG2076 RNA polymerase III tra 99.8 8.7E-14 1.9E-18 138.8 47.5 584 67-654 148-850 (895)
32 KOG4422 Uncharacterized conser 99.8 5.2E-15 1.1E-19 134.5 35.5 437 22-535 115-609 (625)
33 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.5E-19 132.3 35.5 432 120-585 116-588 (625)
34 KOG0495 HAT repeat protein [RN 99.7 1E-11 2.2E-16 119.6 48.4 542 39-633 331-894 (913)
35 PF13429 TPR_15: Tetratricopep 99.7 2.9E-17 6.4E-22 155.2 10.4 257 391-652 15-276 (280)
36 KOG4318 Bicoid mRNA stability 99.7 2.1E-13 4.5E-18 135.4 36.9 195 6-205 8-286 (1088)
37 KOG2003 TPR repeat-containing 99.7 4E-14 8.8E-19 129.8 26.9 455 187-654 198-690 (840)
38 KOG0547 Translocase of outer m 99.7 2E-13 4.4E-18 126.6 30.4 218 431-652 338-565 (606)
39 KOG1155 Anaphase-promoting com 99.7 4.6E-13 1E-17 123.5 30.0 327 319-652 161-494 (559)
40 KOG1126 DNA-binding cell divis 99.7 1.3E-14 2.8E-19 140.1 21.0 281 367-655 333-622 (638)
41 KOG1155 Anaphase-promoting com 99.6 6.6E-12 1.4E-16 116.0 32.4 287 360-654 234-537 (559)
42 KOG1915 Cell cycle control pro 99.6 7.4E-11 1.6E-15 109.4 38.8 466 123-618 76-584 (677)
43 KOG1173 Anaphase-promoting com 99.6 7.9E-12 1.7E-16 118.6 32.9 265 383-653 243-518 (611)
44 KOG1915 Cell cycle control pro 99.6 1.2E-10 2.6E-15 108.1 39.7 439 203-652 86-584 (677)
45 PRK10747 putative protoheme IX 99.6 1.9E-12 4.1E-17 128.1 29.3 278 366-653 97-390 (398)
46 KOG1126 DNA-binding cell divis 99.6 2E-13 4.3E-18 132.0 20.5 245 399-653 334-586 (638)
47 PRK10747 putative protoheme IX 99.6 4.7E-12 1E-16 125.3 30.8 278 335-620 97-391 (398)
48 KOG0547 Translocase of outer m 99.6 7.1E-12 1.5E-16 116.6 26.9 190 463-657 335-536 (606)
49 PF13429 TPR_15: Tetratricopep 99.5 3.4E-14 7.4E-19 134.4 12.0 253 359-618 14-276 (280)
50 TIGR00540 hemY_coli hemY prote 99.5 7.2E-12 1.6E-16 124.8 28.8 280 366-652 97-398 (409)
51 KOG2376 Signal recognition par 99.5 3.7E-10 7.9E-15 108.0 35.7 439 160-649 17-516 (652)
52 TIGR00540 hemY_coli hemY prote 99.5 4.1E-11 8.9E-16 119.4 31.2 225 360-618 160-398 (409)
53 KOG2047 mRNA splicing factor [ 99.5 2.2E-08 4.9E-13 96.9 45.7 507 60-574 104-710 (835)
54 KOG3785 Uncharacterized conser 99.5 9.6E-10 2.1E-14 98.3 31.8 152 469-623 338-494 (557)
55 TIGR02521 type_IV_pilW type IV 99.5 1.5E-11 3.4E-16 113.8 22.2 198 454-653 31-232 (234)
56 KOG1173 Anaphase-promoting com 99.5 1.1E-09 2.3E-14 104.5 33.7 270 363-635 254-534 (611)
57 COG2956 Predicted N-acetylgluc 99.4 3.9E-10 8.5E-15 99.7 27.9 290 265-617 48-345 (389)
58 COG3071 HemY Uncharacterized e 99.4 4.8E-10 1E-14 102.4 29.4 286 265-617 97-388 (400)
59 KOG2047 mRNA splicing factor [ 99.4 2.8E-08 6.2E-13 96.3 42.3 599 20-646 40-716 (835)
60 KOG1156 N-terminal acetyltrans 99.4 1.4E-07 3.1E-12 91.8 46.2 612 20-660 4-695 (700)
61 KOG4162 Predicted calmodulin-b 99.4 8.4E-09 1.8E-13 102.2 36.3 483 132-655 239-785 (799)
62 COG3071 HemY Uncharacterized e 99.4 4.7E-10 1E-14 102.5 25.7 279 366-652 97-389 (400)
63 KOG1129 TPR repeat-containing 99.4 1.8E-11 4E-16 107.9 16.1 226 424-654 228-459 (478)
64 KOG3785 Uncharacterized conser 99.4 2.8E-09 6.1E-14 95.4 29.8 443 99-562 32-498 (557)
65 COG3063 PilF Tfp pilus assembl 99.4 2.9E-11 6.3E-16 101.8 16.5 162 490-655 38-204 (250)
66 COG2956 Predicted N-acetylgluc 99.4 3.9E-10 8.4E-15 99.7 24.0 291 366-661 48-355 (389)
67 KOG0985 Vesicle coat protein c 99.4 8.9E-07 1.9E-11 90.5 52.2 415 224-656 609-1165(1666)
68 KOG1174 Anaphase-promoting com 99.3 1.9E-08 4.1E-13 92.2 33.0 277 348-630 227-511 (564)
69 KOG2376 Signal recognition par 99.3 1.9E-08 4E-13 96.7 34.3 473 24-548 13-517 (652)
70 KOG0985 Vesicle coat protein c 99.3 7.7E-07 1.7E-11 90.9 46.8 577 26-650 513-1246(1666)
71 PRK11189 lipoprotein NlpI; Pro 99.3 1.9E-10 4.1E-15 108.9 19.5 230 396-633 38-280 (296)
72 PRK12370 invasion protein regu 99.3 2.2E-10 4.8E-15 118.7 21.7 247 398-654 275-536 (553)
73 KOG1129 TPR repeat-containing 99.3 1.1E-10 2.4E-15 103.1 16.1 238 388-630 227-469 (478)
74 KOG3616 Selective LIM binding 99.3 1.1E-06 2.4E-11 86.8 44.3 87 563-649 1297-1387(1636)
75 PRK12370 invasion protein regu 99.3 8.6E-10 1.9E-14 114.4 25.0 177 400-584 320-499 (553)
76 KOG1840 Kinesin light chain [C 99.3 4.5E-10 9.7E-15 110.4 20.2 232 421-652 201-478 (508)
77 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.7E-16 80.9 5.9 50 118-167 1-50 (50)
78 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.2E-14 99.7 22.6 163 456-621 67-234 (234)
79 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.2E-16 80.6 5.8 50 250-299 1-50 (50)
80 KOG4162 Predicted calmodulin-b 99.2 9.1E-08 2E-12 95.1 33.8 430 179-626 312-790 (799)
81 KOG1174 Anaphase-promoting com 99.2 7.9E-08 1.7E-12 88.3 30.6 268 382-656 230-503 (564)
82 KOG3616 Selective LIM binding 99.2 2E-07 4.3E-12 91.9 33.4 46 130-178 454-500 (1636)
83 KOG3617 WD40 and TPR repeat-co 99.2 2.2E-06 4.8E-11 85.8 40.9 400 31-481 736-1172(1416)
84 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.8E-12 94.7 32.4 51 599-649 465-516 (517)
85 KOG1156 N-terminal acetyltrans 99.1 3.8E-06 8.2E-11 82.2 39.1 124 524-650 373-508 (700)
86 KOG0548 Molecular co-chaperone 99.1 3.7E-08 8E-13 93.8 24.7 98 198-297 10-114 (539)
87 KOG1127 TPR repeat-containing 99.1 4.5E-07 9.8E-12 92.6 33.3 575 58-650 492-1135(1238)
88 PRK11189 lipoprotein NlpI; Pro 99.1 3.2E-08 6.9E-13 93.7 24.3 217 434-655 41-267 (296)
89 COG3063 PilF Tfp pilus assembl 99.1 2.1E-08 4.5E-13 84.9 19.5 191 459-650 40-233 (250)
90 KOG0624 dsRNA-activated protei 99.1 3.5E-07 7.6E-12 82.0 28.0 190 325-515 41-251 (504)
91 KOG1125 TPR repeat-containing 99.1 3.8E-09 8.2E-14 101.3 16.8 198 455-654 320-528 (579)
92 PF12569 NARP1: NMDA receptor- 99.1 1.7E-07 3.7E-12 93.8 28.8 126 524-652 196-333 (517)
93 KOG0548 Molecular co-chaperone 99.1 3.8E-07 8.3E-12 87.1 29.2 438 163-649 10-485 (539)
94 KOG4340 Uncharacterized conser 99.1 1.1E-06 2.4E-11 77.3 28.7 409 223-657 12-447 (459)
95 KOG1840 Kinesin light chain [C 99.1 7.8E-08 1.7E-12 94.9 24.4 95 523-617 368-477 (508)
96 KOG3617 WD40 and TPR repeat-co 99.1 2.5E-06 5.5E-11 85.5 34.0 390 22-472 756-1189(1416)
97 KOG4340 Uncharacterized conser 99.0 4.8E-07 1E-11 79.5 25.7 306 92-444 13-335 (459)
98 PF04733 Coatomer_E: Coatomer 99.0 5.4E-09 1.2E-13 97.2 14.7 143 499-651 114-263 (290)
99 KOG0624 dsRNA-activated protei 99.0 8.5E-07 1.8E-11 79.6 27.2 314 286-627 37-378 (504)
100 PRK10370 formate-dependent nit 99.0 2.8E-08 6.1E-13 87.2 16.2 147 495-656 24-176 (198)
101 cd05804 StaR_like StaR_like; a 99.0 1E-06 2.2E-11 87.1 28.8 259 391-654 50-337 (355)
102 KOG1127 TPR repeat-containing 98.9 5.6E-06 1.2E-10 85.0 32.4 467 136-651 474-994 (1238)
103 PRK15359 type III secretion sy 98.9 3.4E-08 7.5E-13 81.9 11.4 90 564-653 30-121 (144)
104 TIGR03302 OM_YfiO outer membra 98.8 2E-07 4.3E-12 85.9 17.5 183 452-653 31-232 (235)
105 KOG1128 Uncharacterized conser 98.8 2.3E-07 4.9E-12 91.8 17.9 222 416-656 395-619 (777)
106 PF04733 Coatomer_E: Coatomer 98.8 1.5E-07 3.2E-12 87.7 16.0 217 358-585 40-263 (290)
107 PLN02789 farnesyltranstransfer 98.8 3.7E-07 8.1E-12 86.1 17.6 118 430-549 48-169 (320)
108 PRK15179 Vi polysaccharide bio 98.8 5.9E-07 1.3E-11 93.6 20.4 132 518-652 82-216 (694)
109 COG5010 TadD Flp pilus assembl 98.8 6E-07 1.3E-11 78.1 16.8 153 491-647 70-225 (257)
110 PRK15359 type III secretion sy 98.8 6.9E-08 1.5E-12 80.1 10.8 122 508-636 14-138 (144)
111 PRK04841 transcriptional regul 98.8 1.5E-05 3.2E-10 89.7 32.5 324 331-654 383-761 (903)
112 KOG3060 Uncharacterized conser 98.8 4.5E-07 9.8E-12 78.0 15.3 195 432-629 25-230 (289)
113 PLN02789 farnesyltranstransfer 98.8 3.1E-06 6.7E-11 80.0 22.2 230 386-650 39-299 (320)
114 KOG3060 Uncharacterized conser 98.7 2.3E-06 4.9E-11 73.8 18.7 184 397-585 25-218 (289)
115 KOG1125 TPR repeat-containing 98.7 1E-06 2.2E-11 85.1 17.9 137 507-646 414-564 (579)
116 TIGR02552 LcrH_SycD type III s 98.7 2E-07 4.4E-12 77.2 11.4 102 553-654 11-115 (135)
117 PRK15363 pathogenicity island 98.7 2E-07 4.3E-12 75.4 10.5 102 553-654 28-133 (157)
118 COG5010 TadD Flp pilus assembl 98.7 1E-06 2.2E-11 76.7 15.4 133 519-655 63-199 (257)
119 KOG1128 Uncharacterized conser 98.7 1.4E-06 3E-11 86.5 17.4 189 449-654 393-583 (777)
120 PRK10370 formate-dependent nit 98.7 3.2E-06 7E-11 74.3 18.3 153 461-627 23-181 (198)
121 cd05804 StaR_like StaR_like; a 98.7 3.3E-06 7.2E-11 83.5 20.8 196 421-622 8-218 (355)
122 TIGR03302 OM_YfiO outer membra 98.6 3.7E-06 8E-11 77.4 18.1 185 417-622 31-235 (235)
123 KOG3081 Vesicle coat complex C 98.6 2.7E-05 5.8E-10 68.0 21.2 190 427-625 80-277 (299)
124 COG4783 Putative Zn-dependent 98.6 1.6E-05 3.4E-10 75.7 21.6 116 532-650 316-434 (484)
125 PRK04841 transcriptional regul 98.6 0.0001 2.3E-09 83.0 32.8 264 361-625 460-766 (903)
126 KOG2053 Mitochondrial inherita 98.6 0.0015 3.2E-08 67.3 37.0 159 490-651 439-606 (932)
127 KOG1070 rRNA processing protei 98.6 5.5E-06 1.2E-10 88.0 19.4 233 416-652 1454-1699(1710)
128 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.6E-12 55.3 3.6 33 53-85 2-34 (34)
129 PRK14720 transcript cleavage f 98.5 1.3E-05 2.8E-10 84.6 20.7 161 456-650 118-280 (906)
130 KOG1914 mRNA cleavage and poly 98.5 0.0016 3.5E-08 63.1 37.1 174 400-574 347-526 (656)
131 KOG0553 TPR repeat-containing 98.5 4.5E-06 9.8E-11 74.3 13.6 109 530-641 89-200 (304)
132 TIGR02552 LcrH_SycD type III s 98.5 3E-06 6.5E-11 70.2 11.8 114 509-627 5-122 (135)
133 PF12854 PPR_1: PPR repeat 98.4 2.5E-07 5.4E-12 54.0 3.6 32 553-584 2-33 (34)
134 KOG3081 Vesicle coat complex C 98.4 4.9E-05 1.1E-09 66.4 18.5 143 493-645 114-262 (299)
135 PRK14720 transcript cleavage f 98.4 1.4E-05 3E-10 84.4 18.3 207 419-659 31-258 (906)
136 PF09976 TPR_21: Tetratricopep 98.4 6.7E-06 1.4E-10 68.7 12.9 124 525-650 15-144 (145)
137 KOG1070 rRNA processing protei 98.4 8.4E-05 1.8E-09 79.5 23.4 220 319-539 1455-1688(1710)
138 PRK15179 Vi polysaccharide bio 98.4 4.6E-05 1E-09 79.8 21.4 133 486-623 85-221 (694)
139 COG4783 Putative Zn-dependent 98.4 5.1E-05 1.1E-09 72.4 19.0 144 490-654 309-455 (484)
140 COG4235 Cytochrome c biogenesi 98.4 5.2E-06 1.1E-10 74.5 11.9 110 554-663 151-266 (287)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 6.5E-06 1.4E-10 79.3 13.0 122 524-650 171-294 (395)
142 PF13414 TPR_11: TPR repeat; P 98.3 1.3E-06 2.7E-11 62.2 5.4 65 589-653 2-67 (69)
143 PF07079 DUF1347: Protein of u 98.3 0.0038 8.2E-08 59.3 31.8 126 464-594 389-529 (549)
144 PF12895 Apc3: Anaphase-promot 98.3 4.5E-07 9.8E-12 67.4 2.8 79 571-650 2-84 (84)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.4E-05 7.4E-10 74.5 14.8 126 456-587 171-297 (395)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.3E-05 2.8E-10 64.7 10.4 96 560-655 4-107 (119)
147 PF13432 TPR_16: Tetratricopep 98.2 3E-06 6.4E-11 59.4 5.4 60 596-655 3-62 (65)
148 cd00189 TPR Tetratricopeptide 98.2 1.2E-05 2.5E-10 62.0 9.5 95 560-654 2-98 (100)
149 PLN03088 SGT1, suppressor of 98.2 6E-06 1.3E-10 80.2 9.1 108 527-637 7-117 (356)
150 PF09976 TPR_21: Tetratricopep 98.2 9E-05 2E-09 61.9 14.6 117 499-617 23-145 (145)
151 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.5E-11 49.8 4.3 35 121-155 1-35 (35)
152 KOG0553 TPR repeat-containing 98.1 6.7E-06 1.5E-10 73.2 7.0 94 565-658 88-183 (304)
153 PRK15331 chaperone protein Sic 98.1 3.7E-05 8E-10 62.8 9.8 100 553-652 31-133 (165)
154 PF13812 PPR_3: Pentatricopept 98.1 6.2E-06 1.3E-10 48.7 4.1 33 121-153 2-34 (34)
155 PRK02603 photosystem I assembl 98.1 3.6E-05 7.7E-10 66.6 10.5 98 557-654 34-150 (172)
156 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 49.0 4.3 34 253-286 1-34 (35)
157 PRK10153 DNA-binding transcrip 98.1 7.6E-05 1.7E-09 75.7 14.1 63 591-654 421-483 (517)
158 PLN03088 SGT1, suppressor of 98.0 4.4E-05 9.5E-10 74.3 11.6 97 493-593 8-106 (356)
159 PF13812 PPR_3: Pentatricopept 98.0 7.9E-06 1.7E-10 48.2 3.9 33 253-285 2-34 (34)
160 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.2E-05 1.8E-09 59.9 10.9 104 524-627 4-113 (119)
161 KOG2053 Mitochondrial inherita 98.0 0.033 7.1E-07 57.9 40.0 117 526-645 440-562 (932)
162 KOG0550 Molecular chaperone (D 97.9 0.00018 3.8E-09 67.0 12.3 157 496-656 178-353 (486)
163 PRK10153 DNA-binding transcrip 97.9 0.00036 7.7E-09 71.0 15.4 121 503-626 358-489 (517)
164 PF14559 TPR_19: Tetratricopep 97.9 1.3E-05 2.7E-10 56.8 3.5 54 601-654 2-55 (68)
165 CHL00033 ycf3 photosystem I as 97.9 0.0001 2.2E-09 63.5 9.8 94 557-650 34-139 (168)
166 PF13371 TPR_9: Tetratricopept 97.9 4.3E-05 9.3E-10 55.0 6.2 58 598-655 3-60 (73)
167 PF14938 SNAP: Soluble NSF att 97.9 0.0023 5E-08 60.4 19.4 96 531-626 123-232 (282)
168 cd00189 TPR Tetratricopeptide 97.8 0.00016 3.4E-09 55.5 9.1 93 526-621 4-99 (100)
169 PRK15363 pathogenicity island 97.8 0.0005 1.1E-08 56.1 11.7 97 524-623 37-136 (157)
170 PF07079 DUF1347: Protein of u 97.7 0.044 9.6E-07 52.4 32.8 115 532-650 389-521 (549)
171 KOG1130 Predicted G-alpha GTPa 97.7 0.0002 4.3E-09 66.6 9.4 131 523-653 196-344 (639)
172 PF13432 TPR_16: Tetratricopep 97.7 4.6E-05 9.9E-10 53.3 4.3 61 564-624 3-65 (65)
173 PF12895 Apc3: Anaphase-promot 97.7 7.6E-05 1.6E-09 55.4 5.6 80 536-615 3-83 (84)
174 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 43.5 3.6 31 121-151 1-31 (31)
175 PRK02603 photosystem I assembl 97.7 0.00093 2E-08 57.7 12.9 126 489-638 37-165 (172)
176 PRK10803 tol-pal system protei 97.7 0.00027 5.9E-09 64.8 10.0 83 570-652 155-245 (263)
177 PF05843 Suf: Suppressor of fo 97.7 0.00083 1.8E-08 63.0 13.3 134 489-625 3-142 (280)
178 PRK10866 outer membrane biogen 97.7 0.0038 8.2E-08 57.0 17.0 174 460-650 38-238 (243)
179 PF01535 PPR: PPR repeat; Int 97.7 5.8E-05 1.3E-09 43.3 3.4 31 253-283 1-31 (31)
180 PF13431 TPR_17: Tetratricopep 97.7 2.4E-05 5.1E-10 45.6 1.7 34 612-645 1-34 (34)
181 PF14559 TPR_19: Tetratricopep 97.6 6.1E-05 1.3E-09 53.3 4.0 48 535-585 4-52 (68)
182 PF12688 TPR_5: Tetratrico pep 97.6 0.00052 1.1E-08 54.0 9.4 90 563-652 6-103 (120)
183 PF13414 TPR_11: TPR repeat; P 97.6 9.4E-05 2E-09 52.4 4.8 65 557-621 2-69 (69)
184 KOG1914 mRNA cleavage and poly 97.6 0.082 1.8E-06 51.9 37.0 210 435-647 309-533 (656)
185 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00027 5.9E-09 67.9 8.7 63 557-619 74-141 (453)
186 COG4700 Uncharacterized protei 97.6 0.0083 1.8E-07 49.7 15.1 132 518-652 85-221 (251)
187 CHL00033 ycf3 photosystem I as 97.5 0.0012 2.6E-08 56.9 11.3 98 526-624 39-154 (168)
188 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.6E-08 49.8 9.4 80 123-202 28-116 (120)
189 PF04840 Vps16_C: Vps16, C-ter 97.5 0.088 1.9E-06 50.1 25.5 108 524-648 179-286 (319)
190 PF13281 DUF4071: Domain of un 97.5 0.025 5.5E-07 54.0 20.4 164 459-625 146-340 (374)
191 KOG0550 Molecular chaperone (D 97.5 0.022 4.8E-07 53.6 19.2 217 427-647 177-437 (486)
192 COG3898 Uncharacterized membra 97.4 0.12 2.5E-06 48.7 25.5 65 553-617 323-390 (531)
193 PF10037 MRP-S27: Mitochondria 97.4 0.0025 5.3E-08 62.2 12.5 123 413-535 60-186 (429)
194 PF13428 TPR_14: Tetratricopep 97.4 0.00023 5E-09 44.7 3.7 42 591-632 2-43 (44)
195 PRK10803 tol-pal system protei 97.4 0.0026 5.7E-08 58.4 11.5 100 524-626 145-253 (263)
196 PF08579 RPM2: Mitochondrial r 97.4 0.0028 6.1E-08 47.8 9.4 81 254-334 27-116 (120)
197 PF13424 TPR_12: Tetratricopep 97.3 0.00027 5.8E-09 51.6 4.0 62 591-652 6-74 (78)
198 PF14938 SNAP: Soluble NSF att 97.3 0.0062 1.3E-07 57.4 14.2 94 560-653 116-225 (282)
199 PF13525 YfiO: Outer membrane 97.3 0.012 2.7E-07 52.2 15.1 167 460-645 11-199 (203)
200 KOG4555 TPR repeat-containing 97.3 0.002 4.4E-08 49.6 8.2 90 566-655 51-146 (175)
201 PF13371 TPR_9: Tetratricopept 97.3 0.00071 1.5E-08 48.5 5.7 65 565-629 2-68 (73)
202 KOG1538 Uncharacterized conser 97.3 0.023 5E-07 56.6 17.2 99 288-413 748-846 (1081)
203 PF10037 MRP-S27: Mitochondria 97.3 0.0043 9.3E-08 60.6 12.5 123 345-467 58-186 (429)
204 PF05843 Suf: Suppressor of fo 97.3 0.0035 7.6E-08 58.8 11.6 129 523-653 2-136 (280)
205 PF13512 TPR_18: Tetratricopep 97.3 0.0051 1.1E-07 49.4 10.6 90 563-652 15-127 (142)
206 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.2 4.4E-06 48.1 27.0 85 44-130 30-119 (660)
207 KOG2280 Vacuolar assembly/sort 97.2 0.32 6.9E-06 50.0 29.6 338 281-650 426-796 (829)
208 PF12688 TPR_5: Tetratrico pep 97.2 0.0072 1.6E-07 47.6 11.2 93 492-584 6-101 (120)
209 COG3898 Uncharacterized membra 97.2 0.19 4.1E-06 47.3 25.0 285 355-653 84-392 (531)
210 KOG0543 FKBP-type peptidyl-pro 97.2 0.0032 7E-08 59.3 10.5 95 559-653 258-355 (397)
211 PRK11906 transcriptional regul 97.2 0.0052 1.1E-07 59.5 12.1 144 502-649 273-432 (458)
212 KOG0543 FKBP-type peptidyl-pro 97.2 0.0013 2.9E-08 61.8 7.7 67 590-656 257-323 (397)
213 PF09205 DUF1955: Domain of un 97.2 0.026 5.7E-07 43.9 13.0 141 497-656 12-152 (161)
214 PF06239 ECSIT: Evolutionarily 97.1 0.0034 7.3E-08 53.9 8.7 89 118-206 45-154 (228)
215 COG4235 Cytochrome c biogenesi 97.1 0.02 4.3E-07 52.1 13.7 105 519-626 153-263 (287)
216 KOG2041 WD40 repeat protein [G 97.1 0.45 9.8E-06 48.4 29.4 235 152-412 689-951 (1189)
217 PRK10866 outer membrane biogen 97.0 0.058 1.3E-06 49.3 16.7 57 257-313 180-238 (243)
218 KOG1130 Predicted G-alpha GTPa 97.0 0.0017 3.7E-08 60.6 6.6 245 392-652 25-303 (639)
219 COG1729 Uncharacterized protei 97.0 0.0042 9E-08 55.6 8.7 83 570-652 153-243 (262)
220 COG4700 Uncharacterized protei 97.0 0.16 3.6E-06 42.4 17.4 129 451-582 86-217 (251)
221 KOG2796 Uncharacterized conser 97.0 0.03 6.4E-07 49.4 13.3 135 157-293 179-325 (366)
222 PF13525 YfiO: Outer membrane 96.9 0.014 2.9E-07 51.9 11.6 48 605-652 105-169 (203)
223 PF06239 ECSIT: Evolutionarily 96.9 0.011 2.4E-07 50.9 10.2 98 475-573 35-153 (228)
224 KOG2796 Uncharacterized conser 96.9 0.12 2.7E-06 45.7 16.3 140 489-628 179-324 (366)
225 COG1729 Uncharacterized protei 96.8 0.0091 2E-07 53.5 8.9 102 524-626 144-251 (262)
226 PF13424 TPR_12: Tetratricopep 96.8 0.0012 2.5E-08 48.1 2.9 62 558-619 5-75 (78)
227 PRK11906 transcriptional regul 96.7 0.092 2E-06 51.2 15.9 143 470-617 274-434 (458)
228 PF04840 Vps16_C: Vps16, C-ter 96.7 0.57 1.2E-05 44.6 30.6 103 493-613 183-285 (319)
229 COG0457 NrfG FOG: TPR repeat [ 96.7 0.47 1E-05 43.5 25.2 85 568-652 177-264 (291)
230 KOG2280 Vacuolar assembly/sort 96.7 0.91 2E-05 46.8 33.1 133 147-280 424-574 (829)
231 PF04184 ST7: ST7 protein; In 96.6 0.15 3.3E-06 49.8 16.2 20 607-626 363-382 (539)
232 PF10300 DUF3808: Protein of u 96.6 0.091 2E-06 53.4 15.9 160 490-652 191-375 (468)
233 KOG1538 Uncharacterized conser 96.6 0.13 2.8E-06 51.5 15.7 223 24-281 599-846 (1081)
234 PF03704 BTAD: Bacterial trans 96.5 0.011 2.4E-07 49.4 7.3 68 591-658 63-135 (146)
235 COG3118 Thioredoxin domain-con 96.5 0.11 2.4E-06 47.1 13.6 118 532-653 144-265 (304)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.015 3.2E-07 56.4 8.4 65 589-653 74-141 (453)
237 PRK15331 chaperone protein Sic 96.4 0.041 9E-07 45.4 9.6 87 498-588 48-135 (165)
238 COG4785 NlpI Lipoprotein NlpI, 96.3 0.35 7.6E-06 41.6 14.9 179 466-653 77-266 (297)
239 KOG2041 WD40 repeat protein [G 96.3 1.6 3.4E-05 44.8 26.8 176 55-248 689-879 (1189)
240 PF03704 BTAD: Bacterial trans 96.3 0.14 3.1E-06 42.7 13.0 71 490-561 65-139 (146)
241 PF07719 TPR_2: Tetratricopept 96.3 0.01 2.2E-07 34.6 4.3 33 591-623 2-34 (34)
242 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.3 2.8E-05 42.9 30.3 137 487-627 397-539 (660)
243 COG0457 NrfG FOG: TPR repeat [ 96.2 0.96 2.1E-05 41.4 24.9 199 419-622 59-268 (291)
244 COG4105 ComL DNA uptake lipopr 96.2 0.91 2E-05 40.7 17.6 175 464-658 44-237 (254)
245 KOG4234 TPR repeat-containing 96.1 0.015 3.2E-07 48.9 5.9 123 530-654 103-234 (271)
246 PF08631 SPO22: Meiosis protei 96.1 1.2 2.6E-05 41.9 22.2 126 395-521 46-191 (278)
247 PF00515 TPR_1: Tetratricopept 96.1 0.0096 2.1E-07 34.7 3.6 32 591-622 2-33 (34)
248 PF13512 TPR_18: Tetratricopep 96.1 0.12 2.6E-06 41.7 10.5 21 606-626 115-135 (142)
249 PF13281 DUF4071: Domain of un 96.0 1 2.2E-05 43.5 18.1 76 389-464 146-227 (374)
250 COG4105 ComL DNA uptake lipopr 95.9 1.2 2.6E-05 40.0 18.6 133 497-653 44-196 (254)
251 KOG1258 mRNA processing protei 95.8 2.5 5.4E-05 42.8 27.8 181 455-638 298-489 (577)
252 PF12921 ATP13: Mitochondrial 95.8 0.093 2E-06 41.9 9.0 98 454-569 2-99 (126)
253 KOG0890 Protein kinase of the 95.7 3.5 7.6E-05 48.9 23.7 312 327-656 1388-1734(2382)
254 KOG1941 Acetylcholine receptor 95.7 0.16 3.5E-06 47.2 11.0 224 395-618 17-274 (518)
255 KOG2610 Uncharacterized conser 95.7 0.33 7.2E-06 44.7 12.7 157 466-627 115-286 (491)
256 PF09205 DUF1955: Domain of un 95.5 0.75 1.6E-05 36.2 12.4 59 492-551 91-149 (161)
257 PF02259 FAT: FAT domain; Int 95.4 2.9 6.4E-05 41.1 21.9 148 487-637 146-305 (352)
258 KOG1585 Protein required for f 95.4 1.5 3.2E-05 38.8 15.2 87 560-647 152-250 (308)
259 smart00299 CLH Clathrin heavy 95.3 1.3 2.9E-05 36.4 14.9 127 489-635 9-136 (140)
260 KOG1920 IkappaB kinase complex 95.2 6.2 0.00013 43.6 24.4 154 367-549 894-1053(1265)
261 PF13176 TPR_7: Tetratricopept 95.2 0.036 7.8E-07 32.8 3.7 26 627-652 2-27 (36)
262 KOG2114 Vacuolar assembly/sort 95.2 5.1 0.00011 42.4 26.8 176 224-410 337-516 (933)
263 PF10300 DUF3808: Protein of u 95.2 0.57 1.2E-05 47.7 14.4 115 501-617 247-374 (468)
264 COG3118 Thioredoxin domain-con 95.1 2.5 5.4E-05 38.8 16.3 150 496-647 143-295 (304)
265 PF07035 Mic1: Colon cancer-as 95.1 1.4 3.1E-05 37.0 13.8 135 140-280 14-148 (167)
266 PF12921 ATP13: Mitochondrial 95.0 0.087 1.9E-06 42.1 6.5 52 149-200 46-98 (126)
267 PF04053 Coatomer_WDAD: Coatom 94.9 0.49 1.1E-05 47.4 12.7 159 461-650 268-428 (443)
268 KOG2114 Vacuolar assembly/sort 94.9 6.3 0.00014 41.7 23.3 177 90-278 335-516 (933)
269 KOG4555 TPR repeat-containing 94.8 0.1 2.2E-06 40.7 5.9 58 597-654 50-107 (175)
270 PF04053 Coatomer_WDAD: Coatom 94.8 1.3 2.8E-05 44.5 15.3 156 128-311 269-426 (443)
271 KOG4648 Uncharacterized conser 94.7 0.062 1.3E-06 49.4 5.2 109 528-643 103-214 (536)
272 PF02259 FAT: FAT domain; Int 94.6 0.9 2E-05 44.8 14.2 68 588-655 144-215 (352)
273 PF13181 TPR_8: Tetratricopept 94.6 0.058 1.2E-06 31.3 3.4 30 592-621 3-32 (34)
274 COG2976 Uncharacterized protei 94.5 0.85 1.8E-05 38.8 11.1 90 564-654 95-189 (207)
275 KOG4642 Chaperone-dependent E3 94.5 0.11 2.4E-06 45.3 6.0 88 566-653 18-107 (284)
276 PRK09687 putative lyase; Provi 94.4 4.4 9.6E-05 38.0 24.1 121 188-315 140-262 (280)
277 KOG1586 Protein required for f 94.4 3.3 7.2E-05 36.4 15.0 21 602-622 166-186 (288)
278 PF13428 TPR_14: Tetratricopep 94.4 0.081 1.8E-06 33.0 3.9 31 625-655 2-32 (44)
279 PF07035 Mic1: Colon cancer-as 94.3 2.8 6.2E-05 35.3 13.8 131 309-447 16-148 (167)
280 PF07719 TPR_2: Tetratricopept 94.2 0.066 1.4E-06 31.0 3.0 30 625-654 2-31 (34)
281 KOG1941 Acetylcholine receptor 94.1 0.34 7.5E-06 45.1 8.8 219 429-651 16-273 (518)
282 KOG3941 Intermediate in Toll s 94.0 0.47 1E-05 42.7 9.1 99 474-573 54-173 (406)
283 KOG4648 Uncharacterized conser 94.0 0.14 3E-06 47.2 5.9 93 494-591 104-199 (536)
284 PRK11619 lytic murein transgly 93.9 10 0.00022 40.4 31.7 126 499-631 253-383 (644)
285 KOG3941 Intermediate in Toll s 93.8 0.55 1.2E-05 42.2 9.0 108 373-480 54-185 (406)
286 KOG2610 Uncharacterized conser 93.7 0.69 1.5E-05 42.8 9.7 162 497-661 113-284 (491)
287 PF13176 TPR_7: Tetratricopept 93.6 0.11 2.3E-06 30.7 3.2 28 592-619 1-28 (36)
288 KOG1920 IkappaB kinase complex 93.6 15 0.00032 40.9 26.8 190 263-481 862-1053(1265)
289 KOG1258 mRNA processing protei 93.5 9.7 0.00021 38.8 33.2 179 352-533 296-486 (577)
290 KOG4234 TPR repeat-containing 93.5 0.85 1.8E-05 38.9 9.2 86 496-585 104-195 (271)
291 PF13170 DUF4003: Protein of u 93.4 2.9 6.4E-05 39.4 13.9 101 471-574 120-233 (297)
292 PF00515 TPR_1: Tetratricopept 93.4 0.11 2.3E-06 30.2 3.0 30 625-654 2-31 (34)
293 PF04184 ST7: ST7 protein; In 93.1 2.6 5.7E-05 41.7 13.2 77 555-631 256-337 (539)
294 COG1747 Uncharacterized N-term 93.1 10 0.00022 37.7 21.0 174 453-633 65-248 (711)
295 PF09613 HrpB1_HrpK: Bacterial 93.0 2.6 5.7E-05 34.9 11.3 50 533-585 21-71 (160)
296 COG3629 DnrI DNA-binding trans 93.0 0.52 1.1E-05 43.3 8.1 57 595-651 158-214 (280)
297 PF13181 TPR_8: Tetratricopept 92.9 0.22 4.8E-06 28.8 3.8 29 625-653 2-30 (34)
298 COG2909 MalT ATP-dependent tra 92.7 17 0.00036 39.2 21.0 52 499-550 470-525 (894)
299 smart00299 CLH Clathrin heavy 92.7 4.9 0.00011 33.0 15.5 41 389-430 12-52 (140)
300 PF13431 TPR_17: Tetratricopep 92.6 0.08 1.7E-06 30.7 1.6 26 553-578 7-33 (34)
301 PF13174 TPR_6: Tetratricopept 92.5 0.22 4.7E-06 28.5 3.4 26 627-652 3-28 (33)
302 COG4649 Uncharacterized protei 92.4 5.8 0.00013 33.2 14.8 119 497-618 68-195 (221)
303 TIGR03504 FimV_Cterm FimV C-te 92.0 0.31 6.7E-06 30.2 3.6 27 628-654 3-29 (44)
304 PF00637 Clathrin: Region in C 91.9 0.48 1E-05 39.3 6.1 85 29-116 13-97 (143)
305 KOG1585 Protein required for f 91.9 5.8 0.00013 35.3 12.4 176 457-652 34-218 (308)
306 COG3629 DnrI DNA-binding trans 91.8 1.5 3.2E-05 40.5 9.4 76 456-531 155-236 (280)
307 PF13174 TPR_6: Tetratricopept 91.7 0.24 5.2E-06 28.3 3.0 26 592-617 2-27 (33)
308 TIGR02561 HrpB1_HrpK type III 91.7 1.2 2.5E-05 36.2 7.5 71 570-640 22-94 (153)
309 PF09613 HrpB1_HrpK: Bacterial 91.4 1.4 3.1E-05 36.5 7.9 82 559-640 8-94 (160)
310 PF06552 TOM20_plant: Plant sp 91.3 0.33 7.1E-06 40.7 4.3 30 607-636 52-81 (186)
311 COG3947 Response regulator con 91.3 12 0.00026 34.4 15.6 60 593-652 282-341 (361)
312 PRK12798 chemotaxis protein; R 91.2 16 0.00035 35.7 21.1 181 467-650 125-321 (421)
313 PF00637 Clathrin: Region in C 91.1 0.39 8.5E-06 39.8 4.8 86 161-249 13-98 (143)
314 PF10602 RPN7: 26S proteasome 91.0 2.9 6.3E-05 36.0 10.0 65 121-185 37-103 (177)
315 PF10345 Cohesin_load: Cohesin 91.0 25 0.00054 37.7 22.5 49 600-648 371-428 (608)
316 PF07721 TPR_4: Tetratricopept 90.9 0.32 7E-06 26.1 2.6 23 626-648 3-25 (26)
317 COG4785 NlpI Lipoprotein NlpI, 90.6 1.9 4.2E-05 37.3 8.2 90 533-625 76-168 (297)
318 KOG0545 Aryl-hydrocarbon recep 90.6 1.4 3E-05 38.9 7.5 58 597-654 237-294 (329)
319 TIGR02561 HrpB1_HrpK type III 90.3 8 0.00017 31.6 11.0 50 535-587 23-73 (153)
320 PF13374 TPR_10: Tetratricopep 90.2 0.54 1.2E-05 28.6 3.7 27 626-652 4-30 (42)
321 COG2976 Uncharacterized protei 90.1 12 0.00025 32.3 15.3 117 505-624 70-193 (207)
322 PF14853 Fis1_TPR_C: Fis1 C-te 90.0 1 2.2E-05 29.3 4.8 36 593-628 4-39 (53)
323 smart00028 TPR Tetratricopepti 90.0 0.6 1.3E-05 26.0 3.7 29 593-621 4-32 (34)
324 PF06552 TOM20_plant: Plant sp 89.8 3.2 6.9E-05 35.1 8.7 83 540-653 53-136 (186)
325 PF10602 RPN7: 26S proteasome 89.5 1.8 3.9E-05 37.2 7.6 60 524-584 38-99 (177)
326 COG4649 Uncharacterized protei 88.9 13 0.00028 31.3 13.8 22 394-415 68-89 (221)
327 KOG4507 Uncharacterized conser 88.9 1.6 3.4E-05 43.8 7.3 107 176-282 196-313 (886)
328 PF14561 TPR_20: Tetratricopep 88.7 1 2.2E-05 33.5 4.7 53 589-641 21-75 (90)
329 PF08631 SPO22: Meiosis protei 88.7 22 0.00047 33.5 24.6 121 396-516 5-150 (278)
330 KOG1550 Extracellular protein 88.6 18 0.00039 38.1 15.5 115 537-658 308-431 (552)
331 PF09986 DUF2225: Uncharacteri 88.6 3.3 7.2E-05 36.9 8.7 68 591-658 119-199 (214)
332 PRK09687 putative lyase; Provi 88.3 23 0.00049 33.4 26.0 36 460-496 241-276 (280)
333 KOG4507 Uncharacterized conser 88.3 2.4 5.2E-05 42.6 8.1 86 570-655 619-707 (886)
334 KOG1550 Extracellular protein 87.9 39 0.00085 35.6 22.3 274 370-654 229-539 (552)
335 PF11207 DUF2989: Protein of u 87.9 4 8.7E-05 35.3 8.3 77 567-644 116-198 (203)
336 PRK10941 hypothetical protein; 87.7 3 6.6E-05 38.6 8.2 61 593-653 184-244 (269)
337 COG2909 MalT ATP-dependent tra 87.3 48 0.001 35.9 27.8 182 465-649 469-684 (894)
338 PF13374 TPR_10: Tetratricopep 87.1 1.2 2.7E-05 27.0 3.8 28 591-618 3-30 (42)
339 KOG2066 Vacuolar assembly/sort 86.9 46 0.001 35.4 22.3 72 193-264 395-467 (846)
340 COG4455 ImpE Protein of avirul 86.8 2.4 5.1E-05 36.9 6.2 64 562-625 5-70 (273)
341 PF13170 DUF4003: Protein of u 86.6 29 0.00064 32.9 18.9 157 504-663 79-255 (297)
342 KOG0276 Vesicle coat complex C 86.4 13 0.00028 37.9 11.8 100 465-584 648-747 (794)
343 KOG4570 Uncharacterized conser 86.4 7 0.00015 36.2 9.3 102 448-551 58-164 (418)
344 PF13929 mRNA_stabil: mRNA sta 86.2 28 0.00062 32.3 13.9 66 150-215 197-263 (292)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 5 0.00011 29.8 6.6 61 504-566 24-84 (103)
346 PF04097 Nic96: Nup93/Nic96; 85.7 55 0.0012 35.1 21.9 43 257-300 116-158 (613)
347 COG4455 ImpE Protein of avirul 85.5 24 0.00052 31.1 11.5 124 490-624 4-139 (273)
348 PRK15180 Vi polysaccharide bio 85.4 6.8 0.00015 38.5 9.2 132 493-628 295-429 (831)
349 COG0790 FOG: TPR repeat, SEL1 85.1 36 0.00077 32.4 18.4 116 537-656 128-269 (292)
350 PF12862 Apc5: Anaphase-promot 84.5 3.1 6.7E-05 31.3 5.5 54 600-653 8-70 (94)
351 TIGR02508 type_III_yscG type I 84.3 12 0.00027 28.0 8.0 60 98-160 48-107 (115)
352 PF10345 Cohesin_load: Cohesin 84.3 64 0.0014 34.6 38.1 49 603-651 547-604 (608)
353 KOG1308 Hsp70-interacting prot 84.2 0.78 1.7E-05 42.7 2.5 84 534-620 126-212 (377)
354 PF02284 COX5A: Cytochrome c o 84.1 4.9 0.00011 30.1 6.0 60 505-566 28-87 (108)
355 smart00028 TPR Tetratricopepti 83.5 2.1 4.5E-05 23.6 3.5 29 625-653 2-30 (34)
356 COG1747 Uncharacterized N-term 83.4 53 0.0012 33.1 20.6 163 418-585 65-232 (711)
357 COG4976 Predicted methyltransf 83.1 2.3 5.1E-05 37.2 4.7 57 569-625 6-64 (287)
358 KOG3364 Membrane protein invol 82.6 11 0.00024 30.2 7.7 72 555-626 29-107 (149)
359 KOG3364 Membrane protein invol 82.6 8.3 0.00018 30.8 7.0 69 587-655 29-102 (149)
360 KOG4570 Uncharacterized conser 82.1 5.9 0.00013 36.6 7.0 105 343-448 54-164 (418)
361 KOG1586 Protein required for f 82.0 37 0.00081 30.3 16.3 58 569-626 165-231 (288)
362 KOG2066 Vacuolar assembly/sort 81.9 77 0.0017 33.9 25.4 37 571-610 674-710 (846)
363 KOG1464 COP9 signalosome, subu 81.6 41 0.0009 30.6 19.2 186 386-572 67-286 (440)
364 COG5159 RPN6 26S proteasome re 81.2 14 0.00031 33.7 8.9 32 493-524 9-40 (421)
365 cd00923 Cyt_c_Oxidase_Va Cytoc 80.8 14 0.00031 27.5 7.2 50 267-316 22-71 (103)
366 KOG2471 TPR repeat-containing 80.8 65 0.0014 32.3 13.8 40 265-304 30-69 (696)
367 KOG0376 Serine-threonine phosp 80.6 1.2 2.5E-05 43.7 2.3 100 528-630 10-112 (476)
368 PF11207 DUF2989: Protein of u 80.4 11 0.00023 32.8 7.7 21 589-609 177-197 (203)
369 PF07721 TPR_4: Tetratricopept 80.3 2.8 6.1E-05 22.4 2.8 18 564-581 7-24 (26)
370 KOG0530 Protein farnesyltransf 80.3 36 0.00079 30.9 11.0 52 608-659 131-182 (318)
371 PF04097 Nic96: Nup93/Nic96; 80.0 90 0.002 33.5 21.7 40 94-133 116-158 (613)
372 PF02284 COX5A: Cytochrome c o 79.7 15 0.00032 27.7 7.1 48 269-316 27-74 (108)
373 COG5159 RPN6 26S proteasome re 79.3 52 0.0011 30.3 12.3 51 390-440 9-66 (421)
374 KOG0276 Vesicle coat complex C 79.3 26 0.00056 35.9 10.8 165 86-278 578-747 (794)
375 PF14853 Fis1_TPR_C: Fis1 C-te 78.5 4 8.7E-05 26.6 3.6 31 626-656 3-33 (53)
376 KOG1498 26S proteasome regulat 78.0 70 0.0015 31.1 14.1 98 561-658 134-246 (439)
377 KOG4279 Serine/threonine prote 78.0 87 0.0019 33.3 14.2 185 437-625 181-401 (1226)
378 PF04190 DUF410: Protein of un 77.2 62 0.0014 30.1 16.0 158 101-281 2-170 (260)
379 PRK11619 lytic murein transgly 77.1 1.1E+02 0.0024 32.9 40.7 419 157-616 36-465 (644)
380 COG3947 Response regulator con 77.1 48 0.001 30.7 10.9 56 526-584 283-339 (361)
381 PF08311 Mad3_BUB1_I: Mad3/BUB 76.5 20 0.00042 28.8 7.8 34 2-35 21-54 (126)
382 TIGR02508 type_III_yscG type I 75.8 32 0.00069 25.9 8.8 60 360-422 46-105 (115)
383 PF04910 Tcf25: Transcriptiona 75.8 85 0.0018 30.9 14.2 53 529-584 110-165 (360)
384 KOG1464 COP9 signalosome, subu 74.3 70 0.0015 29.2 16.0 188 397-584 40-258 (440)
385 PF07163 Pex26: Pex26 protein; 73.8 30 0.00066 31.8 8.9 86 460-545 89-181 (309)
386 KOG2422 Uncharacterized conser 73.5 1.2E+02 0.0025 31.4 15.5 154 494-652 349-515 (665)
387 smart00777 Mad3_BUB1_I Mad3/BU 73.4 17 0.00036 29.0 6.5 98 2-113 21-123 (125)
388 KOG3807 Predicted membrane pro 73.0 85 0.0018 29.6 11.8 24 607-630 379-402 (556)
389 PF09670 Cas_Cas02710: CRISPR- 72.8 47 0.001 32.9 11.1 54 463-516 140-198 (379)
390 PF10579 Rapsyn_N: Rapsyn N-te 72.4 7.7 0.00017 27.6 3.9 47 601-647 17-66 (80)
391 KOG0403 Neoplastic transformat 72.0 1.1E+02 0.0024 30.4 13.7 263 1-264 192-586 (645)
392 KOG2063 Vacuolar assembly/sort 71.5 1.7E+02 0.0037 32.5 18.1 27 386-412 506-532 (877)
393 PF04910 Tcf25: Transcriptiona 71.1 1E+02 0.0022 30.3 12.8 57 596-652 109-167 (360)
394 KOG2471 TPR repeat-containing 70.9 80 0.0017 31.7 11.5 107 532-638 250-383 (696)
395 PF13762 MNE1: Mitochondrial s 70.8 28 0.00062 28.5 7.4 90 59-170 40-130 (145)
396 PF10255 Paf67: RNA polymerase 70.6 25 0.00055 34.7 8.4 28 623-650 163-190 (404)
397 smart00386 HAT HAT (Half-A-TPR 70.4 7.8 0.00017 21.5 3.3 29 604-632 1-29 (33)
398 KOG3824 Huntingtin interacting 69.6 6.8 0.00015 36.1 4.0 49 602-650 128-176 (472)
399 PRK10941 hypothetical protein; 69.5 27 0.00058 32.5 8.0 67 561-627 184-252 (269)
400 PF07720 TPR_3: Tetratricopept 69.4 15 0.00033 21.6 4.2 18 595-612 6-23 (36)
401 KOG0890 Protein kinase of the 69.1 3E+02 0.0064 34.3 33.6 107 523-633 1671-1798(2382)
402 KOG3636 Uncharacterized conser 68.7 1.3E+02 0.0027 29.8 12.8 83 553-635 178-271 (669)
403 TIGR03504 FimV_Cterm FimV C-te 68.7 11 0.00024 23.4 3.6 26 257-282 4-29 (44)
404 PF10366 Vps39_1: Vacuolar sor 68.7 41 0.0009 26.1 7.7 27 489-515 41-67 (108)
405 PRK13800 putative oxidoreducta 67.2 2.3E+02 0.005 32.3 25.4 255 374-652 625-880 (897)
406 COG4976 Predicted methyltransf 67.2 11 0.00024 33.3 4.6 51 532-585 5-56 (287)
407 KOG0376 Serine-threonine phosp 67.1 10 0.00023 37.5 5.0 103 494-601 11-116 (476)
408 PF14561 TPR_20: Tetratricopep 67.1 50 0.0011 24.6 8.2 40 613-652 11-50 (90)
409 PF12968 DUF3856: Domain of Un 66.4 38 0.00081 26.5 6.7 56 596-651 61-127 (144)
410 PF09477 Type_III_YscG: Bacter 66.2 58 0.0013 25.0 7.8 76 38-116 21-96 (116)
411 KOG0551 Hsp90 co-chaperone CNS 65.7 29 0.00062 32.8 7.2 91 559-649 82-178 (390)
412 cd00280 TRFH Telomeric Repeat 65.4 22 0.00048 30.2 5.9 38 598-636 119-156 (200)
413 PF13762 MNE1: Mitochondrial s 65.1 55 0.0012 26.9 8.0 52 251-302 78-130 (145)
414 PF08424 NRDE-2: NRDE-2, neces 64.8 1.4E+02 0.003 28.9 14.0 146 476-625 8-189 (321)
415 cd08819 CARD_MDA5_2 Caspase ac 64.5 29 0.00063 25.4 5.6 33 235-268 50-82 (88)
416 PF10579 Rapsyn_N: Rapsyn N-te 64.5 16 0.00035 26.1 4.2 47 534-580 18-65 (80)
417 KOG4814 Uncharacterized conser 64.5 22 0.00048 36.6 6.7 60 594-653 398-457 (872)
418 KOG2581 26S proteasome regulat 64.2 1.5E+02 0.0033 29.1 12.6 92 531-622 178-279 (493)
419 KOG3783 Uncharacterized conser 64.2 1.8E+02 0.0038 29.9 19.2 68 587-654 444-521 (546)
420 PF04781 DUF627: Protein of un 63.8 35 0.00075 26.4 6.2 45 607-651 61-105 (111)
421 PHA02875 ankyrin repeat protei 63.7 1.7E+02 0.0037 29.5 16.8 115 32-155 8-130 (413)
422 PF07163 Pex26: Pex26 protein; 63.3 78 0.0017 29.3 9.2 85 391-477 90-181 (309)
423 KOG2034 Vacuolar sorting prote 62.5 2.4E+02 0.0053 30.9 28.2 258 196-469 364-643 (911)
424 cd08819 CARD_MDA5_2 Caspase ac 61.8 61 0.0013 23.8 6.8 65 175-241 22-86 (88)
425 PF11846 DUF3366: Domain of un 61.1 26 0.00057 30.8 6.2 34 588-621 142-175 (193)
426 PRK10564 maltose regulon perip 60.8 17 0.00037 33.8 4.9 50 16-65 249-299 (303)
427 KOG4642 Chaperone-dependent E3 58.5 96 0.0021 28.0 8.7 120 463-584 19-143 (284)
428 PF11846 DUF3366: Domain of un 58.3 34 0.00073 30.1 6.4 59 527-585 113-171 (193)
429 PRK13342 recombination factor 58.2 1.8E+02 0.0038 29.5 12.2 48 122-169 229-279 (413)
430 PF04190 DUF410: Protein of un 57.8 1.6E+02 0.0035 27.4 18.9 159 233-413 2-170 (260)
431 PF11848 DUF3368: Domain of un 57.4 44 0.00096 21.2 5.0 34 262-295 12-45 (48)
432 cd00280 TRFH Telomeric Repeat 57.0 47 0.001 28.4 6.3 23 64-86 117-139 (200)
433 PF10366 Vps39_1: Vacuolar sor 56.7 91 0.002 24.2 9.1 27 122-148 41-67 (108)
434 PF08424 NRDE-2: NRDE-2, neces 56.4 2E+02 0.0042 27.9 18.5 75 474-549 51-129 (321)
435 PF00244 14-3-3: 14-3-3 protei 55.6 1.5E+02 0.0033 27.0 10.2 50 606-655 142-200 (236)
436 KOG4077 Cytochrome c oxidase, 55.0 60 0.0013 25.7 6.1 58 506-565 68-125 (149)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 55.0 93 0.002 25.0 7.8 42 608-649 81-124 (126)
438 PF14689 SPOB_a: Sensor_kinase 54.7 18 0.00039 24.6 3.1 21 528-548 29-49 (62)
439 COG0735 Fur Fe2+/Zn2+ uptake r 54.6 60 0.0013 26.8 6.8 64 141-205 7-70 (145)
440 KOG0687 26S proteasome regulat 54.6 1.4E+02 0.0031 28.3 9.5 131 501-656 36-176 (393)
441 KOG0292 Vesicle coat complex C 53.6 31 0.00067 37.1 5.9 44 570-616 655-698 (1202)
442 PF10516 SHNi-TPR: SHNi-TPR; 53.3 34 0.00073 20.5 3.7 28 626-653 3-30 (38)
443 PHA02537 M terminase endonucle 53.3 93 0.002 28.1 8.1 24 602-625 190-213 (230)
444 KOG2396 HAT (Half-A-TPR) repea 53.3 2.7E+02 0.0057 28.5 32.8 242 402-652 300-558 (568)
445 KOG0551 Hsp90 co-chaperone CNS 52.6 2.2E+02 0.0047 27.3 10.7 89 494-585 88-180 (390)
446 TIGR02710 CRISPR-associated pr 51.8 2E+02 0.0043 28.4 10.6 25 496-520 139-163 (380)
447 PF14863 Alkyl_sulf_dimr: Alky 51.7 60 0.0013 26.6 6.2 63 575-640 58-120 (141)
448 PF11848 DUF3368: Domain of un 50.8 60 0.0013 20.6 4.8 33 131-163 13-45 (48)
449 KOG4077 Cytochrome c oxidase, 50.3 70 0.0015 25.4 5.9 46 438-483 68-113 (149)
450 COG4941 Predicted RNA polymera 49.9 1.8E+02 0.0039 27.9 9.4 119 503-626 272-401 (415)
451 PF12862 Apc5: Anaphase-promot 49.2 48 0.001 24.8 5.1 26 595-620 46-71 (94)
452 PF13934 ELYS: Nuclear pore co 49.1 2.1E+02 0.0045 26.0 11.1 107 489-604 78-186 (226)
453 PF12968 DUF3856: Domain of Un 48.5 78 0.0017 24.9 5.8 64 601-664 20-100 (144)
454 COG2912 Uncharacterized conser 48.3 71 0.0015 29.5 6.7 55 598-652 189-243 (269)
455 PF12583 TPPII_N: Tripeptidyl 47.7 61 0.0013 25.8 5.3 40 598-637 84-123 (139)
456 PF15469 Sec5: Exocyst complex 47.6 1E+02 0.0022 26.7 7.6 26 639-664 154-179 (182)
457 PF11817 Foie-gras_1: Foie gra 47.0 56 0.0012 30.1 6.1 56 560-615 180-243 (247)
458 KOG1308 Hsp70-interacting prot 46.9 7 0.00015 36.8 0.2 89 569-657 125-215 (377)
459 KOG3807 Predicted membrane pro 46.9 2E+02 0.0043 27.4 9.2 54 564-617 281-338 (556)
460 KOG2062 26S proteasome regulat 46.6 4.1E+02 0.0089 28.7 37.1 179 463-656 510-694 (929)
461 COG0735 Fur Fe2+/Zn2+ uptake r 46.5 1.5E+02 0.0032 24.6 7.9 65 273-338 7-71 (145)
462 KOG0545 Aryl-hydrocarbon recep 46.3 1.1E+02 0.0024 27.7 7.2 68 560-627 232-301 (329)
463 PRK10564 maltose regulon perip 45.7 40 0.00087 31.5 4.8 42 253-294 258-299 (303)
464 TIGR02270 conserved hypothetic 45.6 3.3E+02 0.0073 27.4 23.5 98 30-131 45-142 (410)
465 KOG2063 Vacuolar assembly/sort 44.9 4.9E+02 0.011 29.2 25.9 29 252-280 504-532 (877)
466 KOG4521 Nuclear pore complex, 44.4 5.5E+02 0.012 29.6 13.3 112 460-575 926-1071(1480)
467 PHA02875 ankyrin repeat protei 44.3 3.5E+02 0.0076 27.3 19.4 210 65-287 6-230 (413)
468 PF07575 Nucleopor_Nup85: Nup8 43.9 4.3E+02 0.0093 28.2 18.6 26 89-115 149-174 (566)
469 PF14689 SPOB_a: Sensor_kinase 43.3 46 0.00099 22.6 3.7 45 471-515 7-51 (62)
470 KOG2422 Uncharacterized conser 43.2 4.1E+02 0.0089 27.7 11.8 117 499-616 250-404 (665)
471 PF11663 Toxin_YhaV: Toxin wit 42.9 32 0.00069 27.6 3.2 31 264-296 107-137 (140)
472 PF11768 DUF3312: Protein of u 42.7 3.2E+02 0.0069 28.4 10.7 25 459-483 413-437 (545)
473 KOG4567 GTPase-activating prot 42.5 1.9E+02 0.0041 27.3 8.3 76 43-119 263-348 (370)
474 PF11663 Toxin_YhaV: Toxin wit 42.4 29 0.00063 27.8 2.9 32 132-165 107-138 (140)
475 PRK13342 recombination factor 42.4 3.8E+02 0.0082 27.1 18.7 47 387-433 230-279 (413)
476 PRK13800 putative oxidoreducta 41.1 6E+02 0.013 29.1 27.4 184 351-550 696-880 (897)
477 cd08326 CARD_CASP9 Caspase act 40.9 62 0.0013 23.7 4.3 31 236-266 45-75 (84)
478 cd08326 CARD_CASP9 Caspase act 40.7 50 0.0011 24.2 3.8 35 70-104 42-76 (84)
479 KOG2659 LisH motif-containing 40.0 2.8E+02 0.0061 24.9 9.9 64 519-585 23-91 (228)
480 KOG3824 Huntingtin interacting 38.9 49 0.0011 30.8 4.2 47 534-583 128-175 (472)
481 KOG1497 COP9 signalosome, subu 38.8 3.5E+02 0.0077 25.8 13.9 22 595-616 149-170 (399)
482 PF14669 Asp_Glu_race_2: Putat 38.5 2.7E+02 0.0058 24.3 17.3 96 373-478 96-205 (233)
483 KOG2396 HAT (Half-A-TPR) repea 38.4 4.6E+02 0.0099 26.9 33.1 68 19-87 101-169 (568)
484 PF04762 IKI3: IKI3 family; I 38.3 6.6E+02 0.014 28.8 13.7 199 358-584 699-927 (928)
485 PF13934 ELYS: Nuclear pore co 38.1 3.1E+02 0.0067 24.9 12.3 95 466-572 90-186 (226)
486 KOG2300 Uncharacterized conser 37.9 4.6E+02 0.0099 26.8 30.2 161 498-660 334-520 (629)
487 COG5191 Uncharacterized conser 37.1 56 0.0012 30.6 4.3 72 557-628 106-180 (435)
488 KOG0292 Vesicle coat complex C 36.2 6E+02 0.013 28.3 11.8 131 462-618 651-781 (1202)
489 PRK11639 zinc uptake transcrip 36.1 1.1E+02 0.0024 26.2 5.8 61 146-207 17-77 (169)
490 PF12926 MOZART2: Mitotic-spin 35.9 1.8E+02 0.0038 21.4 7.2 42 176-217 29-70 (88)
491 PRK09857 putative transposase; 35.8 2.1E+02 0.0046 27.2 8.2 64 594-657 210-273 (292)
492 COG0790 FOG: TPR repeat, SEL1 34.1 4.1E+02 0.0088 25.1 18.1 130 469-604 92-236 (292)
493 KOG0686 COP9 signalosome, subu 33.8 4.9E+02 0.011 25.9 13.4 169 255-427 153-352 (466)
494 PRK09462 fur ferric uptake reg 33.8 2E+02 0.0044 23.8 7.0 62 144-206 6-68 (148)
495 PF02184 HAT: HAT (Half-A-TPR) 33.7 73 0.0016 18.2 2.8 23 538-563 3-25 (32)
496 COG5191 Uncharacterized conser 33.3 1E+02 0.0022 29.0 5.2 69 588-656 105-174 (435)
497 KOG4279 Serine/threonine prote 33.0 6.5E+02 0.014 27.4 11.2 101 385-488 202-321 (1226)
498 cd07153 Fur_like Ferric uptake 32.7 95 0.0021 24.3 4.7 44 126-169 6-49 (116)
499 PF03745 DUF309: Domain of unk 32.6 1.5E+02 0.0032 20.2 4.8 34 131-164 10-43 (62)
500 COG5187 RPN7 26S proteasome re 32.1 2.1E+02 0.0047 26.6 7.0 96 557-652 114-220 (412)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.1e-88 Score=735.04 Aligned_cols=643 Identities=28% Similarity=0.479 Sum_probs=595.7
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcC----CCCcchhhH
Q 043580 19 NSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCS----TLDPVACNI 94 (665)
Q Consensus 19 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 94 (665)
..|+..+++.+++++.+.|++++|..+++.|.+.|++|+..+|..++.+|...+.++.+.+++..+. .++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999998654 367789999
Q ss_pred HHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 95 MISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 95 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
++..|++.|+++.|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|...+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Q 043580 175 RMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS----K 250 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~ 250 (665)
.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|..+||++|.+|++.|+.++|.++|++|.. |
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999853 6
Q ss_pred CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHH-------------------------------HHHHHHhhc
Q 043580 251 DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMI-------------------------------VDLISACGR 299 (665)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------------------------------~~ll~~~~~ 299 (665)
|..+|+.++.++.+.|+.+.+.+++..|.+.|+.||..+| +.+|.+|.+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 6666666666666666666666666666666655555555 555555555
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH----hccCCchhhHHHHHHHHHhcCCHHHHHHH
Q 043580 300 AMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE----LGIKDHIASWNALIAGFIRNGMIEDARQL 375 (665)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 375 (665)
.|++++|.++|++|.+.|+.|+..++..++.+|++.|+++.+.++++ .+..|+..+|+.|++.|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666667777777777888888888888888888888888877774 46778889999999999999999999999
Q ss_pred HhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh
Q 043580 376 FNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN 455 (665)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 455 (665)
|+.|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+.|+.++..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999986 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
++++++++|+++|++++|.++|+.+ .+|..+|+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 9999999999999999999999998 4999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|..+|+..+|++|+.+|...|+.+.++...++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999666999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCccccC
Q 043580 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 665 (665)
+++++|+++..|..|+++|...|+|++|.++.+.|++.|++|+||+||+|
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999986
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.7e-74 Score=623.86 Aligned_cols=600 Identities=19% Similarity=0.259 Sum_probs=561.6
Q ss_pred hhHhhhhhhhcCCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcC
Q 043580 6 FHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCS 85 (665)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (665)
+..++..+. ..+.+|+..+|..++++|...+.+..+.+++..+++.+..++...+|.++.+|++.|+++.|.++|++|.
T Consensus 70 A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~ 148 (857)
T PLN03077 70 ALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP 148 (857)
T ss_pred HHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC
Confidence 344555443 3568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHhcCChhhHHHhhhcCC----CCC-----------------------------------cccHHHH
Q 043580 86 TLDPVACNIMISGYIRNDRLNDAREVFDKTP----IKC-----------------------------------CVSYTSM 126 (665)
Q Consensus 86 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~-----------------------------------~~~~~~l 126 (665)
++|..+||.+|.+|++.|++++|.++|++|. .|| ..+||+|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 9999999999999999999999999999874 344 4456777
Q ss_pred HHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 127 IMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 127 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
|.+|++.|+++.|.++|++|. .||..+|+++|.+|.+.|+.++|.++|.+|.+.|+.||..+|+.++.++++.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 788888888888888888886 4688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC----CCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCC
Q 043580 207 VEARSLFDEMKE----RNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDG 282 (665)
Q Consensus 207 ~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 282 (665)
+.|.+++..+.+ ||..+|+.++.+|++.|++++|.++|++|..||..+|++++.+|++.|++++|+++|++|.+.|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999999998874 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHH
Q 043580 283 IAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAG 362 (665)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 362 (665)
+.||..||+.++.+|++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|+++.|.++|+....+|..+|+.+|.+
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~ 464 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHH
Q 043580 363 FIRNGMIEDARQLFNNMQ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGR 439 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 439 (665)
|++.|+.++|..+|++|. .||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++..|++.|++++|.
T Consensus 465 ~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999997 56999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH-Hc
Q 043580 440 WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLE-KR 516 (665)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~ 516 (665)
++|+.+ .+|..+|++++.+|++.|+.++|.++|++|... .||..+|+.++.+|.+.|++++|.++|+.|. +.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999886 689999999999999999999999999999886 8999999999999999999999999999999 78
Q ss_pred CCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 043580 517 NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWG 594 (665)
Q Consensus 517 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 594 (665)
|+.|+..+|+.++.+|++.|++++|.+++++| .+.||..+|++|+.+|...|+.+.+....+++. ..| +...|.
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 99999999999999999999999999999998 578999999999999999999999888877764 445 567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.+.+.|...|+.++|.++.+.|.+.
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHc
Confidence 8888999999999999999999653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-69 Score=577.09 Aligned_cols=485 Identities=30% Similarity=0.486 Sum_probs=459.6
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcC-CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHH
Q 043580 117 IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILG-VIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTN 195 (665)
Q Consensus 117 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (665)
..+..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 196 LLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 196 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
|+.+|++.|++++|.++|++|.+|| ..+|++++.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~-------------------------------~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERN-------------------------------LASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCC-------------------------------eeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999988888888887766 889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhh
Q 043580 276 RAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIAS 355 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (665)
++|.+.|+.|+..||..++.+|++.|..+.+.+++..+.+.|+.++. .+
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~-------------------------------~~ 261 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT-------------------------------FV 261 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc-------------------------------ee
Confidence 99999999999999999999999999999999999988887765544 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcH
Q 043580 356 WNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTL 435 (665)
Q Consensus 356 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 435 (665)
|++|+++|++.|++++|.++|+.|.++|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 55666666666777777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
+.|.+++..|.+.|+.|+..++++|+++|+++|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|+++|++|.+
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 043580 516 RNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT 595 (665)
Q Consensus 516 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 595 (665)
.|+.||..||+.++.+|++.|+.++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.++++++..+|+..+|+.
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~ 499 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA 499 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999998779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCccccC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 665 (665)
++.+|...|+++.|..+++++.++.|++...|..|+++|.+.|++++|.+++++|.+.|++|.||+||++
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-65 Score=545.86 Aligned_cols=518 Identities=14% Similarity=0.143 Sum_probs=382.9
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCc-----chhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHH
Q 043580 55 ESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDP-----VACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMG 129 (665)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 129 (665)
.++...|..++..|++.|++++|.++|++|..++. ..++.++..|.+.|.+++|..+|+.|..|+..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44455555566666666666666666666654332 2334445556666666666666666666666666666666
Q ss_pred HhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHH
Q 043580 130 FAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEA 209 (665)
Q Consensus 130 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 209 (665)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+.+.|.+++++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhccC----CCcccHHHHHHHHHhcCCHHHHHHHHhhCC------CCCeeeHHHHHHHHhhcCChhHHHHHHHHHH
Q 043580 210 RSLFDEMKE----RNIVSWNVMLNGFAKAGLVELARELFERIP------SKDVVSWGTMIDGYLQVERLSEALTMYRAML 279 (665)
Q Consensus 210 ~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 279 (665)
.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++|+.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666642 566666666666666666666666666663 3666777777777777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH----hccCCchhh
Q 043580 280 CDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE----LGIKDHIAS 355 (665)
Q Consensus 280 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~ 355 (665)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+++.|.++++ .++.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777776664 356788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc
Q 043580 356 WNALIAGFIRNGMIEDARQLFNNMQ----KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS 431 (665)
Q Consensus 356 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 431 (665)
|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8888888888889999999999885 579999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 043580 432 SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYS 511 (665)
Q Consensus 432 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 511 (665)
.|+++.|.+++..|.+.|+.|+..+|++++.++. +++++|..+.+.+..- +. .......+..+.|+.+|+
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f-------~~-g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF-------DS-GRPQIENKWTSWALMVYR 836 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh-------hc-cccccccchHHHHHHHHH
Confidence 9999999999999999999999999999987654 2466665554433321 10 011112233467999999
Q ss_pred HHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 512 DLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 512 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
+|++.|+.||..||+.++.++++.+..+.+..+++.|... +..|+..+|+++++++.+. .++|..++++|.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9999999999999999998888999999999999988766 7778899999999998432 468999999996
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-64 Score=532.95 Aligned_cols=541 Identities=15% Similarity=0.197 Sum_probs=340.3
Q ss_pred chHHHHHHhhcCC--CCcchhhHHHHHHHhcCChhhHHHhhhcCCCCCc-----ccHHHHHHHHhhcCChHHHHHHHHHh
Q 043580 74 ISQAKSMFDSCST--LDPVACNIMISGYIRNDRLNDAREVFDKTPIKCC-----VSYTSMIMGFAQNDCWREALEVFRDM 146 (665)
Q Consensus 74 ~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m 146 (665)
...+....+.... ++...|..++..+++.|++++|.++|++|..++. ..++.++.+|.+.|..++|..+|+.|
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 353 EENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 3444455555543 4677899999999999999999999999986654 45677888899999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHH
Q 043580 147 RILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNV 226 (665)
Q Consensus 147 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (665)
.. ||..+|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.+
T Consensus 433 ~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------ 502 (1060)
T PLN03218 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------ 502 (1060)
T ss_pred CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------
Confidence 74 99999999999999999999999999999999999999999999999999999999999999998522
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhH
Q 043580 227 MLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEG 306 (665)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 306 (665)
..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 503 ---------------------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 503 ---------------------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred ---------------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 12335555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH--hCCCCchhHHHHHHHHHHhcCChHHHHHHHH----hccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043580 307 LQIHSIIVK--AGFDCYDFIQATIIHFYAACGRINLARLQFE----LGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQ 380 (665)
Q Consensus 307 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 380 (665)
.+++.+|.+ .|+.|+..+++.++.+|++.|++++|.++|+ .++.|+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555554 2333333333333333333333333332222 1223334444444444444444444445555554
Q ss_pred ----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhH
Q 043580 381 ----KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNL 456 (665)
Q Consensus 381 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 456 (665)
.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 2355555556666655555566666666655555555555666666666666666666656655555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
|+.++.+|++.|++++|.++|++|... .||..+|+.++.+|++.|+.+.|.+++++|.+.|+.||..+|+.++..|.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~- 800 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL- 800 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Confidence 555555555555555555555555543 45555555555555555555555555555555555555555555554332
Q ss_pred cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP---MKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
++++++.++.+.+.. +.+ .......+..++|..+|++|. ..|+..+|..++.++.+.++.+.+..
T Consensus 801 -~~y~ka~~l~~~v~~---f~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~ 868 (1060)
T PLN03218 801 -RRFEKACALGEPVVS---FDS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR 868 (1060)
T ss_pred -HHHHHHhhhhhhhhh---hhc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH
Confidence 123333322222211 000 000111123456778888776 55888888888877777777777777
Q ss_pred HHHHHh-ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCC
Q 043580 612 AAKSLA-GLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPG 660 (665)
Q Consensus 612 ~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 660 (665)
+++.+. .-.+.+..+|..|+..+.+ ..++|..++++|...|+.+...
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 776653 2233444556677666522 1357888888888888766553
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-63 Score=529.65 Aligned_cols=471 Identities=22% Similarity=0.354 Sum_probs=436.7
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-CCCCcchHHHHHHHHHhcCCchHHHHHHhhcC----CCCcchhhH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSG-LESNTFIQNSLINLYAKCGLISQAKSMFDSCS----TLDPVACNI 94 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 94 (665)
.++..+++.+|.++.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..+. .||+.+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3445689999999999999999999999999875 78999999999999999999999999998875 479999999
Q ss_pred HHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 95 MISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 95 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
++..|++.|+++.|.++|++|.+||..+||+++.+|++.|++++|.++|++|.+.|+.||..||..++.+|...|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee
Q 043580 175 RMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVS 254 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (665)
.+++..+.+.|+.+|..++++|+.+|+++|++++|.++|+.|.++| +.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~-------------------------------~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT-------------------------------TVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC-------------------------------hhH
Confidence 9999999999999999999999999999888888888888877666 788
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043580 255 WGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAA 334 (665)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (665)
||+|+.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++++..
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~----------- 361 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV----------- 361 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-----------
Confidence 999999999999999999999999999999999999999999999999999999999999887665554
Q ss_pred cCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 043580 335 CGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG 414 (665)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 414 (665)
+|++|+++|++.|++++|.++|+.|.++|..+||.||.+|++.|+.++|+++|++|.+.|
T Consensus 362 --------------------~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 362 --------------------ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred --------------------ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555556666666666666789999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHH
Q 043580 415 VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN-NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAI 493 (665)
Q Consensus 415 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 493 (665)
+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++++++.. .|+..+|+.|
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~-~p~~~~~~~L 500 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF-KPTVNMWAAL 500 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC-CCCHHHHHHH
Confidence 999999999999999999999999999999975 69999999999999999999999999999998864 4889999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
+.+|...|+.+.|..+++++.+. .| +..+|..++..|++.|++++|.++++.|.+. |+.+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99999999999999999999764 55 5679999999999999999999999999998 8765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-38 Score=352.00 Aligned_cols=619 Identities=12% Similarity=0.034 Sum_probs=319.8
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcc---hhhHHHH
Q 043580 21 DYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPV---ACNIMIS 97 (665)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~ 97 (665)
.+..++..+...+...|++++|...++.+.+.. +.+...+......+...|++++|...|+++.+.++. .+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 225 NNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 445666667777777777788877777777665 223333434444555666777777666665543322 1222333
Q ss_pred HHHhcCChhhHHHhhhcCCC---CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 98 GYIRNDRLNDAREVFDKTPI---KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 98 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
.+...|++++|...|++..+ .+...+..+...+.+.|++++|...++.+.+.+ ..+...+..+...+...|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44555666666666554431 223344455555555555555555555555442 22344555555555555555555
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC------------------------------------
Q 043580 175 RMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE------------------------------------ 218 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------------------ 218 (665)
.++++.+.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 55555554433 12333444444455555555555555544442
Q ss_pred -CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043580 219 -RNIVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLI 294 (665)
Q Consensus 219 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 294 (665)
++..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 1223444444444444444444444444332 122333444444444455555555555444421 22334444444
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHHH
Q 043580 295 SACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIED 371 (665)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 371 (665)
..+.+.|+.++|...+..+.+.+ +.+...+..++..+...|+++.|...++... +.+...|..+...+...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44444555555555555444432 2233334444555555555555555554322 2334455555555555555555
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 043580 372 ARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN 448 (665)
Q Consensus 372 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (665)
|...|+.+.+ .++..+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555554432 133445555555555555555555555555432 223444455555555555555555555555444
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 449 SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
. +.+...+..+...+...|++++|...|+.+....|+..++..++.++...|++++|.+.++++.+.. +.+...+..+
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3 2333444555555555555666655555555554444555555555555566666665555555543 3344555555
Q ss_pred HHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGN 605 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 605 (665)
...|...|++++|.++|+++.+. .| ++.+++.++..+...|+ .+|+.+++++. .+.++..+..+..++...|+
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 55555556666666666655532 33 45555555555555555 55555555543 11234445555555566666
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 606 VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
+++|...++++++.+|.++.++..++.+|.+.|++++|.+++++++
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666666666666666656666666666666666666665554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-37 Score=346.83 Aligned_cols=626 Identities=12% Similarity=0.032 Sum_probs=447.4
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHH
Q 043580 19 NSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIM 95 (665)
Q Consensus 19 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l 95 (665)
.+++...+..+...+...|+++.|...++..++.+ +.+..++..++..+...|++++|...++.+.+.+ +..+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK 267 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 35566788888889999999999999999999876 5677889999999999999999999999886532 2333333
Q ss_pred HHHHHhcCChhhHHHhhhcCCCCC---cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChH
Q 043580 96 ISGYIRNDRLNDAREVFDKTPIKC---CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIW 172 (665)
Q Consensus 96 l~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 172 (665)
...+.+.|++++|...|++..+.+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+.+
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHH
Confidence 445668899999999999876433 2345556677889999999999999998763 335667788888999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC--C-CcccHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 043580 173 ECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--R-NIVSWNVMLNGFAKAGLVELARELFERIPS 249 (665)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (665)
.|...+..+.+.. +.+...+..+...+.+.|++++|.++|+.+.+ | +...+..+...+...|++++|.+.|+.+.+
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999999998765 44677888899999999999999999998875 3 334566667777777888877777776543
Q ss_pred C---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCC--------
Q 043580 250 K---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGF-------- 318 (665)
Q Consensus 250 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------- 318 (665)
. +......++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...++++.+...
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 504 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 1 2223344445555555555555555555442 233444445555555555555555555555444321
Q ss_pred -------------------------CCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHH
Q 043580 319 -------------------------DCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIE 370 (665)
Q Consensus 319 -------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 370 (665)
+.+...+..+...+.+.|+.+.|...+++.. +.+...+..++..+...|+++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 2233344444455555555555555554322 222334455555666666666
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 043580 371 DARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN 447 (665)
Q Consensus 371 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (665)
+|..+++.+.+ .+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666665542 244566666666666777777777776666542 23344555666666667777777777766665
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 043580 448 NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFI 526 (665)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 526 (665)
.. +.+...+..++..+...|++++|.++++.+... +.+...+..+...+...|++++|...++++... .|+..++.
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 43 233456666677777777777777777777665 334556777777788888888888888888775 45556777
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH 603 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 603 (665)
.++.++.+.|++++|.+.++++.+. .| +...+..++..|...|++++|.+.++++. .++++..+..++..+...
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 7888888888888888888888753 55 78888889999999999999999999886 345778889999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++++.+..
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99 88999999999999999999999999999999999999999999987654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.2e-28 Score=272.31 Aligned_cols=615 Identities=12% Similarity=0.018 Sum_probs=462.8
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcch---h-------
Q 043580 23 ELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVA---C------- 92 (665)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~------- 92 (665)
...+....+.+-..++.+.|.+.+.+++... +.++.++..++..+.+.|+.++|.+.++++.+.+|.. .
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 3447778889999999999999999999886 5578888999999999999999999999997643332 1
Q ss_pred ---------hHHHHHHHhcCChhhHHHhhhcCCCCCcccHH----HHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHH
Q 043580 93 ---------NIMISGYIRNDRLNDAREVFDKTPIKCCVSYT----SMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLA 159 (665)
Q Consensus 93 ---------~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 159 (665)
..+.+.+.+.|++++|...|++..+.+..... .........|+.++|.+.|+++.+.. +-+...+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 22234678899999999999987643322211 11122234589999999999999874 23566778
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCC----------------c---hhHHHHHHHHHhccCCHHHHHHHHhhccC--
Q 043580 160 SVISSSVHLGGIWECRMLHGLVIKLMIDG----------------F---VIISTNLLNMYCVCSSLVEARSLFDEMKE-- 218 (665)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 218 (665)
.+...+...|+.++|...++++.+..... + ...+...+..+-.......|...+.....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 88888999999999999999986542110 0 01111112222222234445555544332
Q ss_pred CCccc-HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCC-CHHHH---
Q 043580 219 RNIVS-WNVMLNGFAKAGLVELARELFERIPS--K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAP-NDVMI--- 290 (665)
Q Consensus 219 ~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~--- 290 (665)
.+... .......+...|++++|+..|++... | +...+..+..++.+.|++++|+..|++..+..-.. +...+
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 12111 12335567789999999999998765 3 66788899999999999999999999998743211 11111
Q ss_pred ---------HHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC--C-chhhHHH
Q 043580 291 ---------VDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK--D-HIASWNA 358 (665)
Q Consensus 291 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 358 (665)
......+.+.|++++|...++++.+.. +.+...+..+..++...|+++.|++.|++.+. | +...+..
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 122345678899999999999999875 44566777889999999999999999987653 3 3456666
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC------------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhHHHHH
Q 043580 359 LIAGFIRNGMIEDARQLFNNMQKRD------------VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKP-NEITMVSV 425 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 425 (665)
+...+. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~L 501 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRL 501 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 666664 567899999998765321 234556777888999999999999999985 44 45566778
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-----------chHHHHH
Q 043580 426 FCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-----------SPWNAII 494 (665)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~ 494 (665)
...+...|++++|...++.+.+.. +.+...+..+...+...++.++|...++.+.....+. ..+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 889999999999999999998754 2344445555566788999999999999876542111 1123456
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 573 (665)
..+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+ ..| +...+..++.+|...|+
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC
Confidence 778899999999999872 255667788889999999999999999999995 478 78999999999999999
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCChhHHHH
Q 043580 574 LEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP------SRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 574 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~ 645 (665)
+++|++.++.+. ..| +...+..+..++...|++++|..+++++++..|+++. .+..++.++...|++++|++
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999876 334 5667788888999999999999999999998877654 45677999999999999999
Q ss_pred HHHHHHh
Q 043580 646 IRKEMRD 652 (665)
Q Consensus 646 ~~~~~~~ 652 (665)
.|++++.
T Consensus 733 ~y~~Al~ 739 (1157)
T PRK11447 733 TYKDAMV 739 (1157)
T ss_pred HHHHHHh
Confidence 9999975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=7.4e-26 Score=253.34 Aligned_cols=593 Identities=9% Similarity=0.015 Sum_probs=434.1
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchH----------------HHHHHHHHhcCCchHHHHHHhh
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQ----------------NSLINLYAKCGLISQAKSMFDS 83 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~ 83 (665)
|-+...+..+.+.+...|+.++|.+.++.+.+.. +.+.... ..+...+...|++++|.+.|+.
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3356778888999999999999999999999987 3333222 3334578899999999999999
Q ss_pred cCCCCcchhhH---HHHH-HHhcCChhhHHHhhhcCCC--C-CcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCC---
Q 043580 84 CSTLDPVACNI---MISG-YIRNDRLNDAREVFDKTPI--K-CCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIP--- 153 (665)
Q Consensus 84 ~~~~~~~~~~~---ll~~-~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--- 153 (665)
..+.++..... .... ....|+.++|++.|+++.. | +...+..+...+...|+.++|+..++++.+.....
T Consensus 138 ~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 138 LFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred HccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 88754433221 1111 2245999999999998874 3 44578888899999999999999999987642110
Q ss_pred -------------CHh---hHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhcc
Q 043580 154 -------------NEV---TLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMK 217 (665)
Q Consensus 154 -------------~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 217 (665)
+.. .+...+..+........+...+.........|+... ......+...|++++|+..|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 111112222222233445555554443333333221 234567788999999999999887
Q ss_pred C--C-CcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee---eHH------------HHHHHHhhcCChhHHHHHHHH
Q 043580 218 E--R-NIVSWNVMLNGFAKAGLVELARELFERIPS--KDVV---SWG------------TMIDGYLQVERLSEALTMYRA 277 (665)
Q Consensus 218 ~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~------------~l~~~~~~~~~~~~a~~~~~~ 277 (665)
+ | +...+..+...+.+.|++++|+..|++..+ |+.. .|. .....+.+.|++++|+..|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5 4 556788889999999999999999998765 3221 121 224467789999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCc-----
Q 043580 278 MLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDH----- 352 (665)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 352 (665)
..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+. .++.++|...++......
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 99852 3355667778888999999999999999999875 334555666677664 467888988876433211
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH
Q 043580 353 -------IASWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 353 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
...+..+...+...|++++|.+.|++..+. ++..+..+...|.+.|++++|...++++.+.. +.+...+
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~ 532 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQV 532 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 223455677888999999999999987643 55677889999999999999999999998743 2233334
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHH
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLND---------NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAI 493 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 493 (665)
..+...+...++.++|...++.+......+.. ..+..+...+...|+.++|..+++. .+.+...+..+
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~~~~~~~~L 609 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCCCchHHHHH
Confidence 44445567789999999988876433222221 1223456778899999999999882 34566678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...+...|++++|+..+++..+.. +.+...+..++..+...|++++|.+.++.+. ...| +..++..+..++...|
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCC
Confidence 999999999999999999999864 4577889999999999999999999999887 4467 5677788899999999
Q ss_pred ChHHHHHHHHhCCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCCc
Q 043580 573 QLEDAEEVIRSMPMK-----A---DVVIWGTLLAASRIHGNVEVGERAAKSLAG---LQPSHGP 625 (665)
Q Consensus 573 ~~~~A~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~ 625 (665)
++++|.++++++... | +...+..+...+...|+.++|+..|++++. +.|..+.
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 999999999998621 1 224566778889999999999999999974 4455444
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.3e-24 Score=229.78 Aligned_cols=594 Identities=10% Similarity=0.015 Sum_probs=412.4
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcc--hhhHHHHHHHhcCChhhHHHh
Q 043580 34 SAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPV--ACNIMISGYIRNDRLNDAREV 111 (665)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~ 111 (665)
...|++++|...|+..++.. |-+..++..|...|.+.|+.++|+..+++..+.++. .|..++. .-+++++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La---~i~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA---AIPVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH---HhccChhHHHH
Confidence 33499999999999999987 444889999999999999999999999999876553 3333332 22899999999
Q ss_pred hhcCCC--C-CcccHHHHHHH--------HhhcCChHHHHHHHHHhHHcCCCCCHhhHHHH-HHHHhccCChHHHHHHHH
Q 043580 112 FDKTPI--K-CCVSYTSMIMG--------FAQNDCWREALEVFRDMRILGVIPNEVTLASV-ISSSVHLGGIWECRMLHG 179 (665)
Q Consensus 112 ~~~~~~--~-~~~~~~~ll~~--------~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~ 179 (665)
++++.. | +..++..+... |.+. ++|.+.++ .......|+..+.... .+.+...++++.+...+.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 998863 3 34455555555 5554 66666666 4444444455555555 899999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhc-cCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCee
Q 043580 180 LVIKLMIDGFVIISTNLLNMYCV-CSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS-----KDVV 253 (665)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~ 253 (665)
.+.+.++. +......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++.. |...
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 99999743 35556667778887 466 8888887765556788899999999999999999999998863 1111
Q ss_pred e------------------------------HHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccch
Q 043580 254 S------------------------------WGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAF 303 (665)
Q Consensus 254 ~------------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 303 (665)
+ .-.++..+.+.++++.+.++. ++.|.......-..+....+..
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccccCch
Confidence 1 112245556666666554441 2455544422222222344677
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC------CchhhHHHHHHHHHhcCC---HHHHHH
Q 043580 304 GEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK------DHIASWNALIAGFIRNGM---IEDARQ 374 (665)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~---~~~a~~ 374 (665)
.++...+..+.+.. +-+......+.....+.|+.++|..+++.... .+.....-++..|.+.+. ..+++.
T Consensus 359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 77888787777653 44666777777788899999999999986554 122334467777777766 333333
Q ss_pred HHh-------------------------hcCC---C--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH
Q 043580 375 LFN-------------------------NMQK---R--DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424 (665)
Q Consensus 375 ~~~-------------------------~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (665)
+-. .... . +...|..+..++.. +++++|+..+.+.... .|+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 311 1111 1 34456666666665 6777788877776653 455544444
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-chHHHHHHHHHhcCCh
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-SPWNAIICGLAMHGDA 503 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 503 (665)
+...+...|++++|...++.+... +|+......+...+.+.|++++|...++......|+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 445556778888888888776443 3333445556677778888888888888777753332 2222333344455888
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
++|...+++..+. .|+...+..+...+.+.|++++|+..+++.. ...| +...+..+..++...|++++|+..++
T Consensus 593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888774 4567777778888888888888888888887 4477 67777778888888888888888887
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 583 SMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 583 ~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.. ..| ++..+..+..++...|++++|+..+++++++.|+........+++.....+++.|.+.+++.-.-+
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 765 334 567778888888888888888888888888888888888888888888888888888777665433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2e-24 Score=230.27 Aligned_cols=571 Identities=10% Similarity=-0.006 Sum_probs=397.7
Q ss_pred HHHHhcCCchHHHHHHhhcCCC---CcchhhHHHHHHHhcCChhhHHHhhhcCCC--CCcccHHHHHHHHhhcCChHHHH
Q 043580 66 NLYAKCGLISQAKSMFDSCSTL---DPVACNIMISGYIRNDRLNDAREVFDKTPI--KCCVSYTSMIMGFAQNDCWREAL 140 (665)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~ 140 (665)
..+...|++++|...|++..+. ++..+..+...|.+.|++++|+..+++..+ |+...|..++..+ +++++|.
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHH
Confidence 3344559999999999998764 345677888999999999999999998874 4334444444333 8899999
Q ss_pred HHHHHhHHcCCCCCHhhHHHHHHHH-----hccCChHHHHHHHHHHHHHhcCCchhHHHHH-HHHHhccCCHHHHHHHHh
Q 043580 141 EVFRDMRILGVIPNEVTLASVISSS-----VHLGGIWECRMLHGLVIKLMIDGFVIISTNL-LNMYCVCSSLVEARSLFD 214 (665)
Q Consensus 141 ~~~~~m~~~g~~p~~~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~ 214 (665)
.+++++.+.... +...+..+.... ......+++.+.++ .......|+..+.... .+.|.+.|+++.|++++.
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999987432 344454444440 12334477777776 4444444455544444 899999999999999999
Q ss_pred hccCCCc---ccHHHHHHHHHh-cCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCC-CCHHH
Q 043580 215 EMKERNI---VSWNVMLNGFAK-AGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIA-PNDVM 289 (665)
Q Consensus 215 ~~~~~~~---~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~ 289 (665)
.+.+.+. .....+..+|.. .++ +++..+++...+.+...+..+...|.+.|+.++|..+++++...-.. |...+
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 9987432 235556667777 366 88888877655567888999999999999999999999998754322 55555
Q ss_pred HHHHHHHhhcccchhhHHHHHHH-HHHhCCCCchhHHHHHHHHHHhcCChHHHHHH------------------------
Q 043580 290 IVDLISACGRAMAFGEGLQIHSI-IVKAGFDCYDFIQATIIHFYAACGRINLARLQ------------------------ 344 (665)
Q Consensus 290 ~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~------------------------ 344 (665)
+..++.-..... ..+..-+.. ... .-....-.++..+.+.+.++.++++
T Consensus 286 ~~~~l~r~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 286 WLYLLSKYSANP--VQALANYTVQFAD----NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHHhccCch--hhhccchhhhhHH----HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 544433222110 000000000 000 0000111123334444444433333
Q ss_pred -----HHhccC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----CcchHHHHHHHHHhCCC---chHHHHH-
Q 043580 345 -----FELGIK---DHIASWNALIAGFIRNGMIEDARQLFNNMQK-R-----DVYSWSAMISGYAQNEQ---PNMALEL- 406 (665)
Q Consensus 345 -----~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~a~~~- 406 (665)
++...+ .+.....-+.-...+.|+.++|.++|+.... + +.....-++..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 222221 1333344444456788999999999998765 2 22344567777777766 3333333
Q ss_pred ---------------------HHHHHH-CCC-CC--ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 043580 407 ---------------------FHGMVD-AGV-KP--NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAII 461 (665)
Q Consensus 407 ---------------------~~~m~~-~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (665)
++.... .+. ++ +...+..+..++.. ++.++|...+....... |+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHH
Confidence 111111 112 22 44556666666655 78888999888777654 4544444455
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
..+...|++++|...|+++...+|+...+..+...+...|+.++|...+++..+.. +++...+..+.......|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 66678999999999999987776666777788888999999999999999999864 33334444444455567999999
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
...+++..+ +.|+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++...|++++|+..+++++++
T Consensus 596 l~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999984 57888899999999999999999999999986 445 6778888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 620 QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 620 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|+++..+..++.++...|++++|+..++++.+...
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999987653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-21 Score=184.15 Aligned_cols=436 Identities=13% Similarity=0.118 Sum_probs=338.7
Q ss_pred HHHHHHhccCCHHHHHHHHhhccCCCcc---cHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCCh
Q 043580 195 NLLNMYCVCSSLVEARSLFDEMKERNIV---SWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERL 268 (665)
Q Consensus 195 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 268 (665)
.|..-..+.|++..|++....+-+.|.. ..-.+-..+.+..+.+....--....+ .-..+|+.+...+-..|++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 4555566778888888877666543321 122222445555555544333222222 2456788888888889999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCChHHHHHHHH
Q 043580 269 SEALTMYRAMLCDGIAP-NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDF-IQATIIHFYAACGRINLARLQFE 346 (665)
Q Consensus 269 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 346 (665)
++|+.+|+.+.+ ++| ....|..+..++...|+.+.|.+.+.+.++.+ |+.. ....+.......|+.++|...+.
T Consensus 133 ~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999999887 455 45678888888888899999998888887753 3333 33455566667888888888887
Q ss_pred hccC--Cc-hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-
Q 043580 347 LGIK--DH-IASWNALIAGFIRNGMIEDARQLFNNMQKRDV---YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE- 419 (665)
Q Consensus 347 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~- 419 (665)
+.+. |. ...|+.|...+-..|+...|+..|++..+-|+ ..|-.|...|...+.++.|+..|.+... ..|+.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcch
Confidence 6654 33 34688888888999999999999998876654 4788889999999999999999988877 45554
Q ss_pred hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHH
Q 043580 420 ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLA 498 (665)
Q Consensus 420 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 498 (665)
..+..+...|...|.++.|+..+++.++... .-+..|+.+..++...|+..+|.+.+.+.....| ...+.+.|...+.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5677777778889999999999999887542 2246788899999999999999999999888744 4678899999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHH
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 576 (665)
..|.++.|..+|....+- .|. ...++.|...|-+.|++++|+..+++.. .+.|+ ...|+.+...|...|+.+.
T Consensus 366 E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999998884 554 4578899999999999999999999998 67895 7789999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhH
Q 043580 577 AEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWED 642 (665)
Q Consensus 577 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 642 (665)
|.+.+.++. .+| -.+..+.|...|...|+..+|+..|+.++.+.|+.+.++..|..++.-..+|.+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999998876 556 467788999999999999999999999999999999998888777655555444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-21 Score=183.76 Aligned_cols=423 Identities=11% Similarity=0.109 Sum_probs=347.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
...+..-..+.|++++|++.-...-.. +....-.+-..+.+..+.+.....-....+. .+--..+|+.+...+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 445566677889999999877665542 2223333344566666676655544433332 334568899999999999
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch--hhHH-HHHHHHHhcCCHHHHHHHHh
Q 043580 301 MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI--ASWN-ALIAGFIRNGMIEDARQLFN 377 (665)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-~l~~~~~~~~~~~~a~~~~~ 377 (665)
|++++|+..++.+++.. +.....+..+..++...|+.+.|...|...++.++ .... .+...+-..|++.+|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999875 44567788899999999999999999987766554 3333 34455566899999999888
Q ss_pred hcCCCC---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 043580 378 NMQKRD---VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLN 453 (665)
Q Consensus 378 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 453 (665)
+..+.+ .+.|+.|...+-..|+...|+..|++..+ +.|+ ...|..+...+...+.++.|...+.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 766443 46899999999999999999999999987 4565 3578888889999999999998888876643 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+.-.|..+|.++-|++.+++..+..|+ +..|+.|..++...|+..+|...+.+..... +.-....+.|...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 456677888899999999999999999998666 5689999999999999999999999999863 44567899999999
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A 609 (665)
...|.++.|..+|.... .+.| -....+.|...|-.+|++++|+..++++. .+|+ ...|+.++..|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999988 5688 47789999999999999999999999986 6674 68899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+..+.+++.++|.-..++..|+.+|...|+..+|+.-|+.++....
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999987543
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.2e-20 Score=182.93 Aligned_cols=535 Identities=12% Similarity=0.079 Sum_probs=341.1
Q ss_pred HHHHHHHhhcc--CChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHH---
Q 043580 26 LVSALRYCSAH--IAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYI--- 100 (665)
Q Consensus 26 ~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~--- 100 (665)
...+.++|..- +++..|..+|...+......-+...-....++.+.|+.+.|...|+...+.||...++++....
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 34466666654 5999999999998876543333333445678889999999999999999988877766654322
Q ss_pred ---hcCChhhHHHhhhcCC---CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCC--CCHhhHHHHHHHHhccCChH
Q 043580 101 ---RNDRLNDAREVFDKTP---IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVI--PNEVTLASVISSSVHLGGIW 172 (665)
Q Consensus 101 ---~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~ 172 (665)
....+..+..++...- ..|++..+.|...|...|+++.++++...+...... .-+..|..+.+++-..|+++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 2345566677776543 457889999999999999999999999998875311 12345788899999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC--CC-cccHHHHHHHHHhcC----CHHHHHHHHh
Q 043580 173 ECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--RN-IVSWNVMLNGFAKAG----LVELARELFE 245 (665)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~----~~~~a~~~~~ 245 (665)
.|..++.+..+......+..+..|...|.+.|+++.+...|+.+.+ || ..+...+...|...+ ..+.|..++.
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999998888776554455566788999999999999999998885 33 345555555555543 4577777777
Q ss_pred hCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh--
Q 043580 246 RIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAM----LCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA-- 316 (665)
Q Consensus 246 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 316 (665)
+..++ |...|-.+...+-. ++...++..|... ...+-.+.+...+.+.......|+++.|...+......
T Consensus 405 K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 76654 34455555544443 3444446665543 34555567777777777778888888888877776654
Q ss_pred -CCCCch------hHHHHHHHHHHhcCChHHHHHHHHhccCCchh---hHHHHHHHHHhcCCHHHHHHHHhhcC---CCC
Q 043580 317 -GFDCYD------FIQATIIHFYAACGRINLARLQFELGIKDHIA---SWNALIAGFIRNGMIEDARQLFNNMQ---KRD 383 (665)
Q Consensus 317 -~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~ 383 (665)
...++. .+--.+...+-..++.+.|.+++...+...+. .|.-+.......+...+|...+.... ..+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 112222 12334445555555666666655544432222 12222211122244555555555443 224
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAG-VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
+..+..+...+.+...+..|.+-|....+.- ..+|..+...|.+.|... +....-.|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~------------l~~~~rn~---------- 621 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA------------LHNPSRNP---------- 621 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH------------hcccccCh----------
Confidence 5555555555555555555555444443321 123333333333322110 00000000
Q ss_pred HHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
-...+..++|+++|.++... +.+..+-|.+.-.++..|++..|..+|.+..+.. ..+..+|..+.++|...|++-.|
T Consensus 622 -ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 -EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 11234567777777777765 4556666777777788888888888888887764 34556677788888888888888
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
+++|+...+.+.-.-++.+...|.+++.+.|++.+|.+.+..+.
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888887765544577778888888888888888887766654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.3e-20 Score=194.51 Aligned_cols=253 Identities=13% Similarity=0.066 Sum_probs=205.2
Q ss_pred CCCchHHHHHHHHHHHCC-CCCC-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 043580 397 NEQPNMALELFHGMVDAG-VKPN-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF 474 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (665)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..++.. +.....+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467889999999988765 2343 3456667777788999999999999988753 223456777888899999999999
Q ss_pred HHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 475 EVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 475 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
..|+++... +.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 999998877 4456788889999999999999999999999864 44567788888899999999999999999985
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HH-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VV-------IWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
..| ++..++.+..++...|++++|+..+++.. ..|+ .. .++..+..+...|++++|..+++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 367 68889999999999999999999999865 3332 11 12222223445799999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 624 GPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 624 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...+..++.++...|++++|++.|+++.+..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999997753
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2e-18 Score=172.38 Aligned_cols=603 Identities=10% Similarity=0.071 Sum_probs=320.1
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCC------CCcc-----hhhHHHHHHHhcC------
Q 043580 41 QGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCST------LDPV-----ACNIMISGYIRND------ 103 (665)
Q Consensus 41 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~-----~~~~ll~~~~~~~------ 103 (665)
++-+++..+...+ ....+|......|.+.|+.++...+++.... .++. .++.+...+...+
T Consensus 26 D~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555554 2334566677778888888888888877661 1111 1111111121111
Q ss_pred -----ChhhHHHhhhcCC-----CCCcccHHHHHHHHhhcC--ChHHHHHHHHHhHHcCCCCCHhhHHHHHHHH--hccC
Q 043580 104 -----RLNDAREVFDKTP-----IKCCVSYTSMIMGFAQND--CWREALEVFRDMRILGVIPNEVTLASVISSS--VHLG 169 (665)
Q Consensus 104 -----~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~ 169 (665)
-+..|..+|+... .+....+.. ..|...| +++.|...|....+.. ++|.-. .+.+++ ...+
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~--LlGkA~i~ynkk 178 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQS-PDNILA--LLGKARIAYNKK 178 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhC-CcchHH--HHHHHHHHhccc
Confidence 1223333333211 111111111 1112222 2466666666665542 223222 233443 3555
Q ss_pred ChHHHHHHHHHHHHHhc--CCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHH------HhcCCHHHHH
Q 043580 170 GIWECRMLHGLVIKLMI--DGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGF------AKAGLVELAR 241 (665)
Q Consensus 170 ~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~------~~~~~~~~a~ 241 (665)
++..|..+|.......+ .+|+. -.+-..+.+.|+.+.|+..|....+-|+..-++++... .....++.+.
T Consensus 179 dY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~ 256 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGV 256 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHH
Confidence 66677777766555543 33332 22334455666666666666666654443222222111 1223344455
Q ss_pred HHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 043580 242 ELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIA--PNDVMIVDLISACGRAMAFGEGLQIHSIIVKA 316 (665)
Q Consensus 242 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 316 (665)
.++...-. .|+...+.|...|.-.|++..++.+...+...-.. .-...|-.+.+++...|++++|...|.+..+.
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 55444332 35556666666666666666666666666543210 11233555666666666666666666665554
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcC----CHHHHHHHHhhcCCC---Ccch
Q 043580 317 GFDCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNG----MIEDARQLFNNMQKR---DVYS 386 (665)
Q Consensus 317 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~---~~~~ 386 (665)
........+..+..++.+.|+.+.+...|++.. +.+..+...|...|...+ ..+.|..++....++ |...
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a 416 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEA 416 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence 433323334455666666666666666665433 223334444444444443 334444444444333 2333
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH----HHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc---CCCCCh-----
Q 043580 387 WSAMISGYAQNEQPNMALELFHGM----VDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN---SITLND----- 454 (665)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----- 454 (665)
|-.+...+-. +++..++.+|... ...+-.+.....+.+.......|++..|...|+..... ...++.
T Consensus 417 ~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 417 WLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 3333333332 2222224443332 22333344445555555555555555555555554332 111111
Q ss_pred -hHHHHHHHHHHhcCCHHHH----------------------------------HHHHHHchhC-CCCcchHHHHHHHHH
Q 043580 455 -NLSAAIIDMYAKCGSINTA----------------------------------FEVFYHIRDR-TTSVSPWNAIICGLA 498 (665)
Q Consensus 455 -~~~~~l~~~~~~~~~~~~A----------------------------------~~~~~~~~~~-~~~~~~~~~l~~~~~ 498 (665)
.+-..+..++-..++.+.| ...++.+... ..++..+..+...+.
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHL 575 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHH
Confidence 1111233333334444444 4444444443 333444444444555
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHhcc------------cChHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 043580 499 MHGDANLTLKIYSDLEKRNI-KLNSITFIGVLSTCCH------------AGLVDLGERYFKSMKSVYNVEP-DLKHYGCM 564 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 564 (665)
+...+..|.+-|....+.-. .+|..+...|.+.|.. .+..++|+++|.++. ...| |...-|-+
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGI 652 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGI 652 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccch
Confidence 55555555554444443211 2455555555554433 234667888888877 4578 88888999
Q ss_pred hhHhhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCCh
Q 043580 565 VDLLGRAGQLEDAEEVIRSMPM--KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ--PSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~ 640 (665)
.-+++..|++.+|..+|.+... .....+|..+..+|...|++-.|+++|+..+... .+++.....|+.++.+.|++
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 9999999999999999988862 2456789999999999999999999999987533 34566678899999999999
Q ss_pred hHHHHHHHHHHhCCCc
Q 043580 641 EDAFSIRKEMRDCGMK 656 (665)
Q Consensus 641 ~~A~~~~~~~~~~~~~ 656 (665)
.+|.+.+..++...+.
T Consensus 733 ~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999888876553
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=7.5e-20 Score=183.27 Aligned_cols=296 Identities=12% Similarity=0.115 Sum_probs=229.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHccCc
Q 043580 361 AGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN---EITMVSVFCAIASSGT 434 (665)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~ 434 (665)
..+...|++++|...|.++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777888777643 344677778888888888888888888776432221 2346677778888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc------chHHHHHHHHHhcCChHHHHH
Q 043580 435 LKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV------SPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~ 508 (665)
++.|..+++.+.+.. +.+...+..++..+.+.|++++|.+.++.+....|.. ..+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887652 3455677888888888999999998888887763332 134567777888999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 509 IYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
.++++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|...|++++|...++++.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998864 345667888889999999999999999999854 453 4668889999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh--cCChhHHHHHHHHHHhCCCccCCCc
Q 043580 586 MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD--AGRWEDAFSIRKEMRDCGMKRLPGF 661 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~ 661 (665)
..|+...+..++..+.+.|++++|..+++++++..|++......+...+.. .|+.++|...++++.+++++++|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 457777778888999999999999999999999999987644444333322 5699999999999999999888875
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.5e-18 Score=180.14 Aligned_cols=350 Identities=10% Similarity=0.018 Sum_probs=228.2
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFY 332 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (665)
.-...++..+.+.|++++|..+++........+ ...+..+..+....|+++.|...++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344455666777788888888877777653222 3333344455556777777777777776653 22333344444444
Q ss_pred HhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHH
Q 043580 333 AACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHG 409 (665)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (665)
...|++++|...++.... .+...+..+...+...|++++|...++.
T Consensus 121 -------------------------------~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 121 -------------------------------LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred -------------------------------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 444444444455544432 2344566666667777777777777766
Q ss_pred HHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCcc
Q 043580 410 MVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT-TSVS 488 (665)
Q Consensus 410 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 488 (665)
+.... |+.......+..+...|++++|...++.+.+....++......+...+...|++++|...+++..... .+..
T Consensus 170 ~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 170 QAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 65532 22222111123356667777777777766554333333344445667777888888888888877763 3455
Q ss_pred hHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 043580 489 PWNAIICGLAMHGDANL----TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGC 563 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 563 (665)
.+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+ ..| +...+..
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~ 323 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 67777888888888875 788888888753 34566788888888889999999999998884 467 5677778
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKADVVI-WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+..+|.+.|++++|...++++. ..|+... +..+..++...|+.++|...++++++..|++.. ..++
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~------------~~~~ 391 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP------------QSFE 391 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch------------hhHH
Confidence 8888889999999999988876 4465433 344566788899999999999999999888753 3334
Q ss_pred HHHHHHHHHHhC
Q 043580 642 DAFSIRKEMRDC 653 (665)
Q Consensus 642 ~A~~~~~~~~~~ 653 (665)
+|...+.++.+.
T Consensus 392 ea~~~~~~~~~~ 403 (656)
T PRK15174 392 EGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHHh
Confidence 555556555553
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.1e-17 Score=174.13 Aligned_cols=253 Identities=10% Similarity=0.025 Sum_probs=202.3
Q ss_pred cCCHHHHHHHHhhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHccCcHHHH
Q 043580 366 NGMIEDARQLFNNMQKR------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIASSGTLKEG 438 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 438 (665)
.+++++|.+.|+...+. ....++.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888876532 3456788888888999999999999998874 454 45677788888899999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043580 439 RWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRN 517 (665)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 517 (665)
...++.+.+.. +.+..++..+..++...|++++|...|++.....| +...+..+...+.+.|++++|+..+++..+..
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999988764 34467788899999999999999999999988744 45678888889999999999999999998753
Q ss_pred CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhH-------HHHHhhHhhhcCChHHHHHHHHhCC-CCC
Q 043580 518 IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKH-------YGCMVDLLGRAGQLEDAEEVIRSMP-MKA 588 (665)
Q Consensus 518 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 588 (665)
+.+...+..+...+...|++++|++.|++... +.|+ ... ++.....+...|++++|.+++++.. ..|
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 44677889999999999999999999999884 3442 111 1222233444699999999999864 445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 589 -DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 589 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
+...+..++..+...|++++|+..++++.++.+....
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 4567888999999999999999999999998876444
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.4e-17 Score=174.61 Aligned_cols=294 Identities=10% Similarity=-0.022 Sum_probs=239.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHH
Q 043580 355 SWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIA 430 (665)
Q Consensus 355 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 430 (665)
.+..++.+....|++++|...++.+... +...+..+...+...|++++|+..++++... .|+ ...+..+...+.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~ 155 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV 155 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 3444445555677777777777776532 5567888899999999999999999999885 444 566777888999
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC--CCcchHHHHHHHHHhcCChHHHHH
Q 043580 431 SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT--TSVSPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 508 (665)
..|++++|...++.+......+.. .+..+ ..+...|++++|...++.+.... ++...+..+...+...|++++|+.
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999988765533332 33233 34788999999999999987752 233344556678889999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHhcccChHHH----HHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHh
Q 043580 509 IYSDLEKRNIKLNSITFIGVLSTCCHAGLVDL----GERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRS 583 (665)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (665)
.++++.+.. +.+...+..+...+...|++++ |...|+++. .+.| +...+..++..+...|++++|+..+++
T Consensus 234 ~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 234 TGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999864 4467788889999999999986 899999998 4578 788999999999999999999999999
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 584 MP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 584 ~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+. ..| +...+..+..++...|++++|+..++++.+..|+++..+..++.++...|++++|.+.|+++++...+
T Consensus 310 al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 310 SLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 86 345 56778888999999999999999999999999998877777889999999999999999999887554
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.6e-18 Score=172.15 Aligned_cols=295 Identities=11% Similarity=0.053 Sum_probs=151.9
Q ss_pred HHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcC
Q 043580 260 DGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCY---DFIQATIIHFYAACG 336 (665)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 336 (665)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666667777777766632 22334556666666666666666666666655321111 123344455555555
Q ss_pred ChHHHHHHHHhccC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--------chHHHHHHHHHhCCCchHHHH
Q 043580 337 RINLARLQFELGIK---DHIASWNALIAGFIRNGMIEDARQLFNNMQKRDV--------YSWSAMISGYAQNEQPNMALE 405 (665)
Q Consensus 337 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~ 405 (665)
+++.|...|+.... .+..++..++..+.+.|++++|.+.++.+.+.++ ..+..+...+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555544332 2334455555555555555555555555432211 123344445555566666666
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC
Q 043580 406 LFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT 485 (665)
Q Consensus 406 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 485 (665)
.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+......++..++.+|...|++++|...++++....|
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666555432 1123344444555555555555555555555433222233445555555556666666665555555444
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc---cChHHHHHHHHHHhHhhcCCCCChh
Q 043580 486 SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH---AGLVDLGERYFKSMKSVYNVEPDLK 559 (665)
Q Consensus 486 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~ 559 (665)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.++ ++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 4444455555555556666666666555553 4555555555544432 33555555555555554 4444433
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=4.1e-17 Score=174.99 Aligned_cols=398 Identities=9% Similarity=0.017 Sum_probs=232.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
..-.+......|+.++|++++.+... .+...+..+...+...|++++|..+|++..+. -+.+......+...+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHC
Confidence 34455666677777777777777653 22334677777777777777777777777663 122344555666666777
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC--C-chhhHHHHHHHHHhcCCHHHHHHHHh
Q 043580 301 MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK--D-HIASWNALIAGFIRNGMIEDARQLFN 377 (665)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 377 (665)
|++++|...++.+.+.. +.+.. +..+..++...|+.+.|...+++.+. | +...+..+...+...+..++|.+.++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 77777777777777653 33333 55566666666666666666654332 2 22333444555555555555665555
Q ss_pred hcCCCCcc--------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcH---HHHHHHHHHHH
Q 043580 378 NMQKRDVY--------SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTL---KEGRWAHEYVL 446 (665)
Q Consensus 378 ~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~ 446 (665)
.... ++. ....++......+. ...+++ +.|...++.+.
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRALAQYDALE 223 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHHHHHHHHHH
Confidence 5443 111 00011111100000 011112 44455555554
Q ss_pred Hc-CCCCChh-HH----HHHHHHHHhcCCHHHHHHHHHHchhCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043580 447 NN-SITLNDN-LS----AAIIDMYAKCGSINTAFEVFYHIRDRTTSVS--PWNAIICGLAMHGDANLTLKIYSDLEKRNI 518 (665)
Q Consensus 447 ~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 518 (665)
+. ...|+.. .+ ...+..+...|++++|+..|+.+....+... ....+...|...|++++|+..|+++.....
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 32 1122111 11 0112233455777777777777666532211 112245567777777777777777665321
Q ss_pred CC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----------CCCCC---hhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 519 KL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY----------NVEPD---LKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 519 ~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
.. .......+..++...|++++|.++++.+.+.. .-.|+ ...+..++..+...|++++|+++++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 12334555556677777777777777776430 01122 1244556777778888888888888
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 583 SMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 583 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
++. .+.+...+..++..+...|+.++|+..++++++++|++...+..++.++...|++++|.++++++++...
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 875 2235677777888888888888888888888888888888888888888888888888888888876543
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=2.3e-14 Score=137.31 Aligned_cols=605 Identities=12% Similarity=0.076 Sum_probs=431.9
Q ss_pred CChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhHHHhhhcCC
Q 043580 37 IAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTP 116 (665)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 116 (665)
+|...|+-++....+.+ +.++..|-+-...--..|++..|..+.....+..+.+-...+.+ +|-...+.|..+.-...
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea-iRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA-IRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH-HhcCChHHHHHHHHHHH
Confidence 47778888888888887 45555666666666677889999888887766433333333322 24444555555554333
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 043580 117 IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNL 196 (665)
Q Consensus 117 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (665)
...+.+-..-+.+---..+...=.+++....+. ++-+...|. +.....+.+.|+.++....+.= +.+...|
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvecc-p~s~dLw--- 413 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVECC-PQSMDLW--- 413 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHhc-cchHHHH---
Confidence 221111111111111112223334556666654 222333443 3344556666777777766652 3333333
Q ss_pred HHHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCeeeHHHHHHHHhhc
Q 043580 197 LNMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS--------KDVVSWGTMIDGYLQV 265 (665)
Q Consensus 197 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~ 265 (665)
-+|.+..-++.|.+++....+ .+...|.+-...--..|+.+.+..++.+... -+...|-.=...+-..
T Consensus 414 -lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 -LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 345555667777777777765 3555666666666677888888777766442 2333455555566666
Q ss_pred CChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 043580 266 ERLSEALTMYRAMLCDGIAPN--DVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARL 343 (665)
Q Consensus 266 ~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 343 (665)
|..-.+..+.+....-|+.-. ..|+..-...|.+.+.++-+..+|...++. ++....++.....+--..|..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 777777777777777666543 367777788888888888888888888775 35666777777777777888888888
Q ss_pred HHHhcc---CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 043580 344 QFELGI---KDHIASWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKP 417 (665)
Q Consensus 344 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 417 (665)
++++.+ +.....|......+-..|++..|..++...-+. +...|-.-+..-..+.+++.|..+|.+... ..|
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sg 649 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISG 649 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCC
Confidence 888654 334556677777788889999999998877543 455777778888889999999999998877 467
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHH
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICG 496 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 496 (665)
+...|..-++.---.++.++|.+++++.++.- +.-...|..+...+-+.++++.|.+.|..-....| .+..|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 77777766666667788999999998887752 33346778888899999999999999887777644 45567777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
--+.|.+-+|..++++..-.+ +-+...|...+..-.+.|+.+.|..+..+..+. +..+...|..-|....+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchH
Confidence 788899999999999998876 668889999999999999999999999998874 44478888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
....+++.... +-....+...+....++++|...|++++..+|+...++..+-..+...|.-++-.+++.+.... +
T Consensus 806 s~DALkkce~d--phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--E 881 (913)
T KOG0495|consen 806 SIDALKKCEHD--PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--E 881 (913)
T ss_pred HHHHHHhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--C
Confidence 88888888744 4455566677788889999999999999999999999999989999999999999999888765 4
Q ss_pred cCCCcccc
Q 043580 657 RLPGFSGV 664 (665)
Q Consensus 657 ~~~~~~~~ 664 (665)
+.-|..|.
T Consensus 882 P~hG~~W~ 889 (913)
T KOG0495|consen 882 PTHGELWQ 889 (913)
T ss_pred CCCCcHHH
Confidence 56666664
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=5.5e-17 Score=174.04 Aligned_cols=407 Identities=9% Similarity=0.006 Sum_probs=250.1
Q ss_pred HHHHHHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCC
Q 043580 194 TNLLNMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVER 267 (665)
Q Consensus 194 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 267 (665)
...+.+....|+.++|++++..... .....+..+...+.+.|++++|.+.+++... .+...+..+...+...|+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 3344455555666666655555543 1122355555556666666666666665332 234456667777777888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 043580 268 LSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFEL 347 (665)
Q Consensus 268 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 347 (665)
+++|+..+++..+. -+.+.. +..+...+...|+.++|...++++.+.. +.+......+..++...+..+.|...++.
T Consensus 99 ~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 88888888887764 222334 6666667777788888888888877764 33444555667777778888888887775
Q ss_pred ccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCc---hHHHHHHHHHHHC-CCCCChh-HH
Q 043580 348 GIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQP---NMALELFHGMVDA-GVKPNEI-TM 422 (665)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~-~~~p~~~-~~ 422 (665)
... ++.....+ ....+....... +.......+++ ++|++.++.+.+. ...|+.. .+
T Consensus 176 ~~~-~p~~~~~l--------~~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 176 ANL-TPAEKRDL--------EADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred CCC-CHHHHHHH--------HHHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 554 22110000 000000111100 00011111222 5555555555542 1122211 11
Q ss_pred H----HHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-----chHHH
Q 043580 423 V----SVFCAIASSGTLKEGRWAHEYVLNNSIT-LNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-----SPWNA 492 (665)
Q Consensus 423 ~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ 492 (665)
. ..+..+...|+.++|...|+.+.+.+.+ |+. ....+...|...|++++|...|+++....|.. .....
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 1122334556666666666666655422 221 11224556777777777777777766543322 23445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-C
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRN-----------IKLNS---ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-D 557 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~ 557 (665)
+..++...|++++|..+++++.... -.|+. ..+..+...+...|+.++|++.++++... .| +
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n 392 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGN 392 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 5556677777888877777777642 12332 24556777888899999999999999854 67 7
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
...+..++.++...|++++|++.++++. ..|+ ...+...+..+...|++++|+..++++++..|+++..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8899999999999999999999999986 4464 6677777888999999999999999999999999974
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=9.3e-15 Score=145.60 Aligned_cols=626 Identities=12% Similarity=0.044 Sum_probs=373.4
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhc---CCCCcchhhHHH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSC---STLDPVACNIMI 96 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~ll 96 (665)
+|...............|++++|.+++.++++.. +.....|..|...|-+.|+.+++...+=-. .+.|...|..+-
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3334445555555555699999999999999997 667779999999999999999998766443 344667788888
Q ss_pred HHHHhcCChhhHHHhhhcCCCCCcccH---HHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhH----HHHHHHHhccC
Q 043580 97 SGYIRNDRLNDAREVFDKTPIKCCVSY---TSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTL----ASVISSSVHLG 169 (665)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~~ 169 (665)
....+.|++++|.-.|.+..+-++.-| ---...|-+.|+...|.+.|.++.+.....|..-. ..+++.+...+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 888899999999999998775444333 33456788999999999999999887432222222 33455666777
Q ss_pred ChHHHHHHHHHHHHHh-cCCchhHHHHHHHHHhccCCHHHHHHHHhhccC----C----------------------Ccc
Q 043580 170 GIWECRMLHGLVIKLM-IDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----R----------------------NIV 222 (665)
Q Consensus 170 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~----------------------~~~ 222 (665)
+.+.|.+.++.....+ -..+...++.++..|.+...++.|......+.. + +..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 7788888887777633 345667778888888888888888877655542 1 111
Q ss_pred cHHHH----HHHHH--hcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043580 223 SWNVM----LNGFA--KAGLVELARELFERIP----SKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVD 292 (665)
Q Consensus 223 ~~~~l----l~~~~--~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 292 (665)
+|..- .-++. +.+...+++.-|-... ..++..|.-+..+|...|++.+|+.+|..+...-.--+...|..
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 12111 11122 2233333333222111 12445677777778888888888888887776544445667777
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch------------hhHHHHH
Q 043580 293 LISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI------------ASWNALI 360 (665)
Q Consensus 293 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~l~ 360 (665)
+.+.+...|..++|.+.|..++... +.+..+...+...+.+.|+.++|.+.++....||. .......
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 7777777788888888887777654 34455566677777778888888777776554441 2222334
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC--------------------------CcchHHHHHHHHHhCCCchHHHHH------HH
Q 043580 361 AGFIRNGMIEDARQLFNNMQKR--------------------------DVYSWSAMISGYAQNEQPNMALEL------FH 408 (665)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~~~------~~ 408 (665)
..+...|+.++=..+...|..+ +......++.+-.+.++......- +.
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 4555666655533333322210 111111222222222221111110 11
Q ss_pred HHHHCCCCCChh--HHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCCh----hHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 409 GMVDAGVKPNEI--TMVSVFCAIASSGTLKEGRWAHEYVLNNSI-TLND----NLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 409 ~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
--...|+..+.. .+.-++.++++.+++++|..+...+..... ..+. ..-...+.+....+++..|...+..+.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 111122222221 244555667777777777777776654322 1111 122344455566777777777777766
Q ss_pred hC-----CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCC
Q 043580 482 DR-----TT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVE 555 (665)
Q Consensus 482 ~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 555 (665)
.. .+ -...|+..++...+.++-.--.+.+..+......-+........+-....+.+..|+..+-++.. ..
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~ 770 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QN 770 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hC
Confidence 64 11 12345555555555554443344433333321111122222222333446777788887776663 46
Q ss_pred CChhHHH-HHhhHhhh----------cCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 556 PDLKHYG-CMVDLLGR----------AGQLEDAEEVIRSMP--MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 556 p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
|+....+ +++-++.. .-..-.+..++.+.. ..+ ...++..++.+|...|=..-|+.+|+++++..
T Consensus 771 pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 7533333 33333321 112334445554443 223 56788889999999999999999999999987
Q ss_pred CCCCc------------hHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 621 PSHGP------------SRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 621 p~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
|.... +-+.|.-+|...|+.+-|.+++++-
T Consensus 851 p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 851 PKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred ccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 64322 1345666899999999999988654
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.7e-17 Score=151.58 Aligned_cols=457 Identities=13% Similarity=0.062 Sum_probs=284.9
Q ss_pred hccCChHHHHHHHHHHHHHhcCCchhHH-HHHHHHHhccCCHHHHHHHHhhccC--CCc------ccHHHHHHHHHhcCC
Q 043580 166 VHLGGIWECRMLHGLVIKLMIDGFVIIS-TNLLNMYCVCSSLVEARSLFDEMKE--RNI------VSWNVMLNGFAKAGL 236 (665)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~--~~~------~~~~~ll~~~~~~~~ 236 (665)
.......+|...++-+++...-|+.... -.+...+.+...+.+|+++++.... |++ ...+.+.-.+.+.|.
T Consensus 212 ~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 212 EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEeccc
Confidence 3344455566666666655544443222 1244556666677777777665543 221 122333333556677
Q ss_pred HHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHH------------HHHHHHHH-----h
Q 043580 237 VELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV------------MIVDLISA-----C 297 (665)
Q Consensus 237 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------~~~~ll~~-----~ 297 (665)
++.|+..|+.+.+ ||..+--.|+-++..-|+.++..+.|..|..--..||.. ..+..|.. +
T Consensus 292 y~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 292 YDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred chhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 7777777766554 555444444445555667777777777776432222222 11111110 0
Q ss_pred hccc--chhhHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHH
Q 043580 298 GRAM--AFGEGLQIHSIIVKAGFDCYDFI-QATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQ 374 (665)
Q Consensus 298 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 374 (665)
-+.+ +.+.++-.-..+..--+.|+-.. +...+...-.....+.|.. .-..-...+.++|+++.|.+
T Consensus 372 ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d-----------lei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID-----------LEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh-----------hhhhHHHHHHhccCHHHHHH
Confidence 0000 00000000001111111111100 0001111111101111100 00111234789999999999
Q ss_pred HHhhcCCCCcchHHHHH-----HHHHh-CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 043580 375 LFNNMQKRDVYSWSAMI-----SGYAQ-NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN 448 (665)
Q Consensus 375 ~~~~~~~~~~~~~~~l~-----~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (665)
+++-..++|..+-.+.. .-|.+ ..++..|..+-+...... +-+....+.--+.....|++++|...+++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 99988877554332222 12222 345667777666554432 223333333334445678999999999999876
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 043580 449 SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIG 527 (665)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 527 (665)
.-.-....|+ +.-.+-..|++++|++.|-++... ..+..+...+...|-...++..|++++-+.... ++.|+..+..
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 5444444444 445677899999999999988876 566777888889999999999999999887765 4668889999
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAAS-RIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~g 604 (665)
|...|.+.|+-..|.+.+-.-- ..-| |..+...|...|....-+++|+.+|++.. ..|+..-|..++..| .+.|
T Consensus 598 l~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 9999999999999998766543 4566 89999999999999999999999999975 789999998888765 5789
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
++.+|..+|+......|.+...+..|..++...|-
T Consensus 675 nyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999998888774
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1e-15 Score=160.61 Aligned_cols=436 Identities=9% Similarity=0.000 Sum_probs=262.4
Q ss_pred ccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHH-H--HHHHHhcCCHHHHHHH
Q 043580 167 HLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNV-M--LNGFAKAGLVELAREL 243 (665)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-l--l~~~~~~~~~~~a~~~ 243 (665)
+.|+.+.|...+++..+..+.....++ .++..+...|+.++|+..+++...|+...+.. + ...+...|++++|+++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444443322211222 44445555555555555555555443322222 2 2244444555555555
Q ss_pred HhhCCC--C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCC
Q 043580 244 FERIPS--K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDC 320 (665)
Q Consensus 244 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 320 (665)
|+++.+ | +...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|++.++++.+.. +.
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~ 201 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PT 201 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CC
Confidence 555543 2 234444555666666667777777666655 34554444333333333444444666666666654 44
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCC-
Q 043580 321 YDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQ- 399 (665)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~- 399 (665)
+...+..++.++.+.|-...|.+..+... +..+-..... =+.+.|-+..+....++. ...++
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~----------~~~~r~ 264 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ-----LERDAAAEQVRMAVLPTR----------SETERF 264 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH-----HHHHHHHHHHhhcccccc----------cchhhH
Confidence 45555666666666666666665554321 1100000000 000111111111000000 00112
Q ss_pred --chHHHHHHHHHHHC-CCCCCh-h----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 043580 400 --PNMALELFHGMVDA-GVKPNE-I----TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSIN 471 (665)
Q Consensus 400 --~~~a~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (665)
.+.|+.-++.+... +..|.. . ...-.+-++...++..++.+.++.+...+.+....+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34555555555542 122321 1 222345677788888899999999888887766667788889999999999
Q ss_pred HHHHHHHHchhCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCC--hH-HHHHHHH
Q 043580 472 TAFEVFYHIRDRTT-------SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-----------KLN--SI-TFIGVLS 530 (665)
Q Consensus 472 ~A~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~--~~-~~~~l~~ 530 (665)
+|..++..+....+ +......|.-++...+++++|..+++++.+.-. .|| .. .+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999988866421 222246788888899999999999999887321 122 22 3445566
Q ss_pred HhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 043580 531 TCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVE 607 (665)
Q Consensus 531 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~ 607 (665)
.+...|+..+|++.++++.. ..| |......+..++...|++.+|++.++.+. ..| +.......+.++...|++.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 77889999999999999984 478 89999999999999999999999998865 345 5666777888888999999
Q ss_pred HHHHHHHHHhccCCCCCch
Q 043580 608 VGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~ 626 (665)
+|..+.+.+.+..|+++..
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhhCCCchhH
Confidence 9999999999999999863
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.79 E-value=2.7e-15 Score=148.49 Aligned_cols=581 Identities=13% Similarity=0.047 Sum_probs=285.4
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCC----CcchhhHHHHHHHhcCChhhHHHhhhcCCCCC
Q 043580 44 QIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL----DPVACNIMISGYIRNDRLNDAREVFDKTPIKC 119 (665)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 119 (665)
.+|..+...|+.|+..||.+++.-||..|+.+.|- +|.-|.-. +...|+.++.++.+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56777788888888888888888888888888887 77766532 4567777887777777776554 667
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHH-HHhcCCchhHHHHHHH
Q 043580 120 CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVI-KLMIDGFVIISTNLLN 198 (665)
Q Consensus 120 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 198 (665)
..+|..|+.+|.+.||...-..+=+.|.. ++..+...|.......++..+. .-+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 77888888888888876652222221221 1111122221111111111100 00001111 11222
Q ss_pred HHhccCCHHHHHHHHhhccCCCcc-cHHHHHHHHHhc-CCHHHHHHHHhhCCC-CCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 199 MYCVCSSLVEARSLFDEMKERNIV-SWNVMLNGFAKA-GLVELARELFERIPS-KDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
...-.|-++.+++++..++-.... +...+++-.... ..+++-..+-....+ ++..+|..++.+-...|+.+.|..++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 222333344444444333310000 000011111111 122222222233333 45555555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH----------------
Q 043580 276 RAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRIN---------------- 339 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---------------- 339 (665)
.+|+++|++.+.+.|..++-+ .++...+..+++-|...|+.|+..++...+..+...|...
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAav 304 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAV 304 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHH
Confidence 555555555555555555544 4555555555555555555555555544443333322211
Q ss_pred --------HHHHHHHh----------------ccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CcchHH
Q 043580 340 --------LARLQFEL----------------GIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR-------DVYSWS 388 (665)
Q Consensus 340 --------~a~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~ 388 (665)
.|-+.++. +......+|...++ ...+|+-++.+++...+..+ ++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 11111111 11112223322222 22245555555555544432 222222
Q ss_pred HHHHHHH-------------------------------------------------------------------------
Q 043580 389 AMISGYA------------------------------------------------------------------------- 395 (665)
Q Consensus 389 ~l~~~~~------------------------------------------------------------------------- 395 (665)
.++.-|.
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 2222221
Q ss_pred -------hCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHh
Q 043580 396 -------QNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN--NSITLNDNLSAAIIDMYAK 466 (665)
Q Consensus 396 -------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 466 (665)
+.-+..+++..-++.... .-| ..|..++.-++.....+.|..+.+++.. ..+..+...+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 111111111111111000 000 2345556666666666666666666642 3344556667778888888
Q ss_pred cCCHHHHHHHHHHchhC---CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------------------
Q 043580 467 CGSINTAFEVFYHIRDR---TTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI------------------------ 518 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------ 518 (665)
.+...++..++.++.+. .+. ..++..++...+..|+.+...++.+-+...|+
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcch
Confidence 88888888888777765 121 22344455555566666666555555444432
Q ss_pred ------CCChHHHHHHHHHhcc--cChHHHHHHH------HHHhHh---------hcC---------------CCC----
Q 043580 519 ------KLNSITFIGVLSTCCH--AGLVDLGERY------FKSMKS---------VYN---------------VEP---- 556 (665)
Q Consensus 519 ------~p~~~~~~~l~~~~~~--~~~~~~a~~~------~~~~~~---------~~~---------------~~p---- 556 (665)
+|.+.....+.+.+.+ ..+++.+..+ |.+.-+ ..| +.|
T Consensus 621 ~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll 700 (1088)
T KOG4318|consen 621 PEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELL 700 (1088)
T ss_pred HHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHH
Confidence 2222222222222111 1112221111 111100 001 111
Q ss_pred -----ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCCch--
Q 043580 557 -----DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQPSHGPS-- 626 (665)
Q Consensus 557 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~-- 626 (665)
+..-...|+..|.+.|+++.|..++.++...|++.+...|...+.+.. ++-++....+++.+..|..++.
T Consensus 701 ~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~ 780 (1088)
T KOG4318|consen 701 LELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTC 780 (1088)
T ss_pred HHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchH
Confidence 001112366678888889999999988887788888877777776544 5667777777787777766654
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 627 -RVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 627 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.-.+.+..+-.+.+.|.+++.+..+..
T Consensus 781 ~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 781 YYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 3333344555556668888888887763
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=7.2e-15 Score=154.39 Aligned_cols=435 Identities=12% Similarity=0.045 Sum_probs=286.3
Q ss_pred HHHHHhccCCHHHHHHHHhhccCCCcc---cHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee-HHHH--HHHHhhcCChh
Q 043580 196 LLNMYCVCSSLVEARSLFDEMKERNIV---SWNVMLNGFAKAGLVELARELFERIPSKDVVS-WGTM--IDGYLQVERLS 269 (665)
Q Consensus 196 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~ 269 (665)
-+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++...|+... +..+ ...+...|+++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344567899999999999998863332 23377788888899999999998888764433 3333 34677778999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 043580 270 EALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI 349 (665)
Q Consensus 270 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 349 (665)
+|+++|+++.+.. +-++..+..++..+...++.++|++.++.+.+.. |+...+..++..+...++...|.+.+++.+
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999988752 2234555566667777788888888777776653 223333333333333344434555555433
Q ss_pred --CC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHH
Q 043580 350 --KD-HIASWNALIAGFIRNGMIEDARQLFNNMQKR-DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSV 425 (665)
Q Consensus 350 --~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 425 (665)
.| +...+..+..++.+.|-...|+++...-+.- +...+..+ +.+.|.+..+ .+..|+..
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr----~a~~~~~~----- 259 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVR----MAVLPTRS----- 259 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHh----hccccccc-----
Confidence 12 2334445555555555555555555443211 00000000 0111111111 11111100
Q ss_pred HHHHHccCc---HHHHHHHHHHHHH-cCCCCCh-hH----HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc--hHHHHH
Q 043580 426 FCAIASSGT---LKEGRWAHEYVLN-NSITLND-NL----SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS--PWNAII 494 (665)
Q Consensus 426 l~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~-~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~l~ 494 (665)
...+ .+.+..-++.+.. .+-.|.. .. ..-.+-++...|++.++++.|+.+...+..+. +-..+.
T Consensus 260 -----~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 260 -----ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred -----chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0112 2344444444443 1222322 22 22345567889999999999999997643333 556788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-----CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC----------CCCC--
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRN-----IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN----------VEPD-- 557 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~-- 557 (665)
.+|...+++++|+.+++++.... ..++......|.-++...+++++|..+++.+.+... -.||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122344467889999999999999999999986311 0132
Q ss_pred -hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 558 -LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 558 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
...+..++..+.-.|++.+|++.++++. ..| +...+..+...+...|...+|+..++.+..++|++......++.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 2334456788889999999999999986 335 7888899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...|++++|.++.+.+.+.-.
T Consensus 495 l~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCC
Confidence 999999999999988876543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=8.7e-14 Score=138.82 Aligned_cols=584 Identities=12% Similarity=0.003 Sum_probs=399.9
Q ss_pred HHHhcCCchHHHHHHhhcCCC---CcchhhHHHHHHHhcCChhhHHHhhhc---CCCCCcccHHHHHHHHhhcCChHHHH
Q 043580 67 LYAKCGLISQAKSMFDSCSTL---DPVACNIMISGYIRNDRLNDAREVFDK---TPIKCCVSYTSMIMGFAQNDCWREAL 140 (665)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 140 (665)
.+...|+.++|..++.+++.. ++..|..|...|-..|+.+++...+-. ..+.|..-|..+.....+.|++.+|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 333449999999999998764 557899999999999999999887743 44566788999999999999999999
Q ss_pred HHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHH----HHHHHhccCCHHHHHHHHhhc
Q 043580 141 EVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTN----LLNMYCVCSSLVEARSLFDEM 216 (665)
Q Consensus 141 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~ 216 (665)
-+|.+.++.. +++...+.--...|.+.|+...|..-+.++.....+.|..-... .++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999874 34555555667788899999999999999998876555444443 455666777778898888877
Q ss_pred cC-----CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------------CCeeeHH----HHHHH
Q 043580 217 KE-----RNIVSWNVMLNGFAKAGLVELARELFERIPS--------------------------KDVVSWG----TMIDG 261 (665)
Q Consensus 217 ~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~----~l~~~ 261 (665)
.. -+...++.++..+.+...++.|......+.. ++..+|. -++-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 64 2334688888889988888888776654432 1111222 23334
Q ss_pred HhhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 043580 262 YLQVERLSEALTMYRAMLCDGIAP--NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRIN 339 (665)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 339 (665)
+...+..+....+........+.| +...|.-+..++...|.+..|+.++..+.......+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444555555555556655444 556788999999999999999999999998877777889999999999999999
Q ss_pred HHHHHHHhccCCch---hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc------------hHHHHHHHHHhCCCchHHH
Q 043580 340 LARLQFELGIKDHI---ASWNALIAGFIRNGMIEDARQLFNNMQKRDVY------------SWSAMISGYAQNEQPNMAL 404 (665)
Q Consensus 340 ~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~a~ 404 (665)
.|.+.+++.+..++ ..-..|...+.+.|+.++|.+.+..+..+|.. ........+.+.|+.++-+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999998765443 34456677899999999999999998765421 2233445566777777655
Q ss_pred HHHHHHHHCC-----C-----------------CCChhHHHHHHHHHHccCcHHHHHHHHHH------HHHcCCCCCh--
Q 043580 405 ELFHGMVDAG-----V-----------------KPNEITMVSVFCAIASSGTLKEGRWAHEY------VLNNSITLND-- 454 (665)
Q Consensus 405 ~~~~~m~~~~-----~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~~~~-- 454 (665)
.+-..|+... + .-...+...+..+-.+.++.....+-... -...++..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5544443211 1 11222233334444444432222211111 1123444333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CC-ChH
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR----TTSV---SPWNAIICGLAMHGDANLTLKIYSDLEKR-NI--KL-NSI 523 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~p-~~~ 523 (665)
..+..++..+++.+++++|..+...+... .++. ..-...+.+....+++..|...++.|... +. .| -..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 35567888999999999999999887775 2222 12345566778899999999999999875 11 22 223
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-C-hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH-
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-D-LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAA- 599 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~- 599 (665)
.|+...+...+.++-.--.+++..+. ..+| + +..+..-...+..++.+..|+..+-++- ..|+.+..+-++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555566665544445444443 2344 2 3333334455567889999998776653 44654444333322
Q ss_pred HH----------hcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 600 SR----------IHGNVEVGERAAKSLAGLQPS--HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 600 ~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+. ++-..-+++.++++..++... .-.+.+.+|.+|...|-.--|..+|+++++-.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 21 222466778888888766544 66779999999999999999999999998853
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5.2e-15 Score=134.54 Aligned_cols=437 Identities=10% Similarity=0.098 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHH--hcCCchHH-HHHHhhc--------------
Q 043580 22 YELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYA--KCGLISQA-KSMFDSC-------------- 84 (665)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~-------------- 84 (665)
...+-|+|++.- .+|...++--+++.|.+.|++.+...--.|+...+ .+.++.-| .+.|-.|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 345567776654 45788999999999999998888877666654333 33333222 1222222
Q ss_pred ---------CCCCcchhhHHHHHHHhcCChhhHHHhhhcCCC----CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCC
Q 043580 85 ---------STLDPVACNIMISGYIRNDRLNDAREVFDKTPI----KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGV 151 (665)
Q Consensus 85 ---------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 151 (665)
....+.++.++|.++|+--..+.|.+++++... -+..+||.+|.+-.-. .-.+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 223445555555555555555555555554432 2334555555433211 11455555555555
Q ss_pred CCCHhhHHHHHHHHhccCChHH----HHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHH-HHHHHhhccCCCcccHHH
Q 043580 152 IPNEVTLASVISSSVHLGGIWE----CRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVE-ARSLFDEMKERNIVSWNV 226 (665)
Q Consensus 152 ~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~ 226 (665)
+||..|+|+++++..+.|+++. |.+++.+|.+.|++|...+|..+|..+++.++..+ |..++.++.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~--------- 340 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ--------- 340 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH---------
Confidence 5666666666655555554443 33455555555566665555555555555555432 222222222
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC--------CCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHC----CCCCC---HHHHH
Q 043580 227 MLNGFAKAGLVELARELFERIP--------SKDVVSWGTMIDGYLQVERLSEALTMYRAMLCD----GIAPN---DVMIV 291 (665)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~---~~~~~ 291 (665)
+.+. ..|...|...+..|.+..+.+-|.++-.-+... -+.|+ ...|.
T Consensus 341 ------------------N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 341 ------------------NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred ------------------HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 1110 012334444555555555555554443333211 02222 22345
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHH
Q 043580 292 DLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIED 371 (665)
Q Consensus 292 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (665)
.+....+.....+.....|+.|+-.-.-|...+...++++....+.++-.-+++
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw-------------------------- 456 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIW-------------------------- 456 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHH--------------------------
Confidence 555555556666666666666655554455555444444444444443333222
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc--cCcHHHHHHHHHHHHHcC
Q 043580 372 ARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS--SGTLKEGRWAHEYVLNNS 449 (665)
Q Consensus 372 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~ 449 (665)
..+.. |...-+-+--.+++..|......|+...-..+-....+ ..-.+..+..-.++++.
T Consensus 457 -----~D~~~------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 457 -----KDSKE------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred -----HHHHH------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 21110 00011111222333333333333432211111111111 00111111122223332
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcchHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 043580 450 ITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVSPWN---AIICGLAMHGDANLTLKIYSDLEKRNIKLNSI 523 (665)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 523 (665)
..+....+.+.-.+.+.|+.++|.++|..+... -|.....+ .++......+++..|..+++-|...+.+.-..
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 334445666777788888899888888877543 33344445 45556667788888888888887665322222
Q ss_pred HHHHHHHHhccc
Q 043580 524 TFIGVLSTCCHA 535 (665)
Q Consensus 524 ~~~~l~~~~~~~ 535 (665)
.-+.+...|.-.
T Consensus 598 La~RI~e~f~iN 609 (625)
T KOG4422|consen 598 LAQRIMEDFAIN 609 (625)
T ss_pred HHHHHHHhcCcC
Confidence 333444444333
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.2e-14 Score=132.34 Aligned_cols=432 Identities=13% Similarity=0.071 Sum_probs=284.0
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHh--ccCChHHHH-HHHHHHHHHhcCCchhHHHHH
Q 043580 120 CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSV--HLGGIWECR-MLHGLVIKLMIDGFVIISTNL 196 (665)
Q Consensus 120 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 196 (665)
+.+-|.|++.. ..|.+..+.-+|+.|...|+..+...-..+++..+ ...+.--++ +.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 34666766654 46788889999999999988777766555555433 223322221 1222222222 2222222
Q ss_pred HHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeeeHHHHHHHHhhcCChhHHH
Q 043580 197 LNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK----DVVSWGTMIDGYLQVERLSEAL 272 (665)
Q Consensus 197 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 272 (665)
+.|...+ ++-+...+...+|..+|.++|+-...+.|.+++++.... +..+||.+|.+-.- ..-.
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3444433 444555556678999999999999999999999987753 55677777766443 3337
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhH----HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHHH-
Q 043580 273 TMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEG----LQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLAR-LQFE- 346 (665)
Q Consensus 273 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~- 346 (665)
+++.+|....+.||..||++++....+.|+++.+ .+++.+|.+.|+.|....|..++..+++.++..+.. .++.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 8999999999999999999999999999987765 567888999999999999999999999988875432 2221
Q ss_pred -------h---ccCC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------CcchHHHHHHHHHhCCCchHHH
Q 043580 347 -------L---GIKD-HIASWNALIAGFIRNGMIEDARQLFNNMQKR-----------DVYSWSAMISGYAQNEQPNMAL 404 (665)
Q Consensus 347 -------~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~ 404 (665)
+ .+.| +...|...+..|.+..+.+-|.++..-+... ...-|..+....|+....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122 3445677888888989988888887766532 2234667778888888999999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 043580 405 ELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT 484 (665)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 484 (665)
..|+.|.-.-+-|+..+...++++....+.++-.-++|..++..|..........+...+++..- .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~--------------h 484 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL--------------H 484 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC--------------C
Confidence 99999998888999999999999999999999999999999988866555554444444444330 0
Q ss_pred CCcch---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHH
Q 043580 485 TSVSP---WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHY 561 (665)
Q Consensus 485 ~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 561 (665)
|+... +.....-++ ..-.+.....-.+|.... ......+..+-.+.+.|..++|.++|..+.+...--|-....
T Consensus 485 p~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 11111 111111110 001111222333444433 333445555666677777777777777775442333433344
Q ss_pred HH---HhhHhhhcCChHHHHHHHHhCC
Q 043580 562 GC---MVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 562 ~~---l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
++ +++.-.+.+....|...++-+.
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 43 3444445566777777766663
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1e-11 Score=119.57 Aligned_cols=542 Identities=11% Similarity=0.041 Sum_probs=343.9
Q ss_pred hhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCC---CcchhhHHHHHHHhcCChhhHHHhhhcC
Q 043580 39 VSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL---DPVACNIMISGYIRNDRLNDAREVFDKT 115 (665)
Q Consensus 39 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 115 (665)
.+.|..+.....++- +.++..|-.....-. +...=.+++.+..+. ++..|.+ -..-...++|.-++.+.
T Consensus 331 ~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rA 402 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFL-PTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERA 402 (913)
T ss_pred hHHHHHHHHHHHHhC-CCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHH
Confidence 355666666666553 444444433332221 122223444444432 2333332 23344555566666654
Q ss_pred CCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHH----HHHhcCCchh
Q 043580 116 PIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLV----IKLMIDGFVI 191 (665)
Q Consensus 116 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~ 191 (665)
.+-.+ +-.-|.-++++..-++.|.+++...++. ++.+...|.+....--..|+.+...++.+.. ...|+..+..
T Consensus 403 veccp-~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 403 VECCP-QSMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred HHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 43111 1123444566666677778888777765 5667777766666666777777766665543 3456777777
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhhccC-----CC-cccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHH
Q 043580 192 ISTNLLNMYCVCSSLVEARSLFDEMKE-----RN-IVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGY 262 (665)
Q Consensus 192 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 262 (665)
-|-.=...+-..|..-.+..+...+.. .| ..+|..-...|.+.+.++-|..+|....+ .+...|......-
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e 560 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 777767777777777776666665553 11 23555555556666666666665555443 1334454444444
Q ss_pred hhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 043580 263 LQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLAR 342 (665)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 342 (665)
-..|..++...+|++.... ++-....+.......-..|+...|..++....+..
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~------------------------- 614 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN------------------------- 614 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-------------------------
Confidence 4556666666666666653 23233333333444444566666665555555443
Q ss_pred HHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-
Q 043580 343 LQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE- 419 (665)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~- 419 (665)
+.+...|..-+.....+.+++.|..+|.+... ++...|.--+..---.++.++|++++++..+. -|+-
T Consensus 615 -------pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~ 685 (913)
T KOG0495|consen 615 -------PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH 685 (913)
T ss_pred -------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH
Confidence 12334555555666666666666677766543 34455555555555567788888888777763 4443
Q ss_pred hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHH
Q 043580 420 ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLA 498 (665)
Q Consensus 420 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 498 (665)
..|..+...+.+.++.+.|...|..-.+. .+..+..+-.|...--+.|.+-+|..++++..-. +.+...|-..|..-.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 34555556666667777776655443322 2334466777777778888999999999988776 556778999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHH
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
+.|..+.|..+..+.++. ++.+...|.--|...-+.++-..+...+++ ..-|+...-.+...+....++++|.
T Consensus 765 R~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999998888875 466777888888877777775555554444 3567788888999999999999999
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 579 EVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 579 ~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
+.|.+.. ..| ..++|..+...+..+|.-+.-.+++.+....+|.+...|....+-
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 9999986 334 568898899999999999999999999999999999987766543
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=2.9e-17 Score=155.25 Aligned_cols=257 Identities=17% Similarity=0.157 Sum_probs=114.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH-HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 043580 391 ISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS-VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGS 469 (665)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (665)
...+.+.|++++|++++++......+|+...|.. +.......++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455566667777776654443322344333333 333444566677777777766654432 44455556666 68888
Q ss_pred HHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHhcccChHHHHHHHHHHh
Q 043580 470 INTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLNSITFIGVLSTCCHAGLVDLGERYFKSM 548 (665)
Q Consensus 470 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 548 (665)
+++|.+++....+..+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887776666677778888888999999999999999977543 3457778888999999999999999999999
Q ss_pred HhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 549 KSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 549 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+. .| |......++..+...|+.+++.++++... .+.++..|..+..++...|+.++|...++++...+|+++.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 965 88 68889999999999999999888887765 2356678889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+++.++...|+.++|.++++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988754
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.71 E-value=2.1e-13 Score=135.42 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=121.4
Q ss_pred hhHhhhhhhhcCCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCC------------------------CCCcchH
Q 043580 6 FHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGL------------------------ESNTFIQ 61 (665)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------~~~~~~~ 61 (665)
+.+=||...+..++.|++.||..+|..|+..|+.+.|- +|.-|.-... .|.++||
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDty 86 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTY 86 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHH
Confidence 44556777788899999999999999999999988887 6665553222 4566788
Q ss_pred HHHHHHHHhcCCchHHH---HHHhhcCC---------------------C--CcchhhHHHHHHHhcCChhhHHHhhhcC
Q 043580 62 NSLINLYAKCGLISQAK---SMFDSCST---------------------L--DPVACNIMISGYIRNDRLNDAREVFDKT 115 (665)
Q Consensus 62 ~~l~~~~~~~g~~~~a~---~~~~~~~~---------------------~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 115 (665)
+.|+.+|+..||+.--. +-++.+.. | .+..- ..+....-.|-|+.+..++..+
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence 88888888888765422 21211111 0 01111 1222223333444444443222
Q ss_pred C----------------------------------CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHH
Q 043580 116 P----------------------------------IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASV 161 (665)
Q Consensus 116 ~----------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 161 (665)
+ .+++.+|..++.+-...|+.+.|..++.+|++.|...+.+-|-.+
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1 145556777777777777777777777777777777666655555
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 162 ISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
+-+ .++...+..++.-|...|+.|+..|+..-+..+..+|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 544 66666677777777777777777777665555555443
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=4e-14 Score=129.75 Aligned_cols=455 Identities=13% Similarity=0.061 Sum_probs=287.5
Q ss_pred CCchhHHHHHHHHHhccCCHHHHHHHHhhccC----CCcc-cHHHHHHHHHhcCCHHHHHHHHhhCCC--CC------ee
Q 043580 187 DGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----RNIV-SWNVMLNGFAKAGLVELARELFERIPS--KD------VV 253 (665)
Q Consensus 187 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~------~~ 253 (665)
..+-.+...|..-|..+....+|+..++-+.+ ||.- .-..+...+.+...+.+|+..++-... |+ +.
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 33444555677777777788888888887775 3322 112234556677788888888765443 21 23
Q ss_pred eHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHH--------
Q 043580 254 SWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQ-------- 325 (665)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 325 (665)
..+.+.-.+.+.|+++.|+..|+...+ ..|+-.+-..|+-.+.-.|+-+...+.|..|......++..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 445555567788999999999888776 4688777666776777788888888888888765333322111
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCch----hhHHHHHHHHHh---cCCHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 043580 326 ATIIHFYAACGRINLARLQFELGIKDHI----ASWNALIAGFIR---NGMIEDARQLFNNMQKR--DVYSWSAMISGYAQ 396 (665)
Q Consensus 326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~ 396 (665)
..++.-..+.... +-+++.-+.+. .|-..+|.-... .--.+-+++.++.-... -...--.-...+.+
T Consensus 356 ~~ll~eai~nd~l----k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 356 DNLLNEAIKNDHL----KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred hHHHHHHHhhHHH----HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 0111111111000 00000000000 000001100000 00011111111111100 00011112345778
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH--ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 043580 397 NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA--SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF 474 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (665)
.|+++.|+++++-+.+..-+.....-+.+-..+. -..++..|.++-+..+... .-++.....-.......|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 9999999999998877553333333333322222 2346667777766665422 222233333334455689999999
Q ss_pred HHHHHchhCCCCcchHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 475 EVFYHIRDRTTSVSPWNA---IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
+.+++... .+..+-.+ +.-.+...|+.++|+..|-++..- +..+...+..+...|....+...|++++.+..
T Consensus 511 ~~ykeal~--ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~-- 585 (840)
T KOG2003|consen 511 EFYKEALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN-- 585 (840)
T ss_pred HHHHHHHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--
Confidence 99999988 44443333 334567889999999999887653 35567788888999999999999999999887
Q ss_pred cCCCC-ChhHHHHHhhHhhhcCChHHHHHHH-HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 552 YNVEP-DLKHYGCMVDLLGRAGQLEDAEEVI-RSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 552 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
.+-| |+.+...|.+.|-+.|+...|.+.. +... .+.+..+...|...|....-.++|+.+++++.-++|+....-.
T Consensus 586 -slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 586 -SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred -ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 5577 8999999999999999999999875 4444 4446667666666666666679999999999999999999888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 629 LLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+++.++.+.|+|.+|..+|+....+-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999999999999999987653
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2e-13 Score=126.63 Aligned_cols=218 Identities=10% Similarity=0.086 Sum_probs=177.1
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHH
Q 043580 431 SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
-.|+.-.+..-++..++....+.. .|--+..+|....+.++....|++.... +.++.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357777888888888876544333 2666777889999999999999999887 56788899888888889999999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC
Q 043580 510 YSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA 588 (665)
Q Consensus 510 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 588 (665)
|++.+... +-+...|..+.-+..+.+.++++...|++.+++ ++-.++.|+....++...++++.|.+.|+... ..|
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999853 335667777777778899999999999999975 33368999999999999999999999999875 233
Q ss_pred C-------HHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 589 D-------VVIW-GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 589 ~-------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
. ...+ +.-+..+...+++..|+.+++++++++|....++..|+.+-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 2121 22222344569999999999999999999999999999999999999999999998754
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.6e-13 Score=123.50 Aligned_cols=327 Identities=12% Similarity=0.056 Sum_probs=231.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc-hHHHHHHHHHhC
Q 043580 319 DCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVY-SWSAMISGYAQN 397 (665)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~ 397 (665)
..|...+-.....+.+.|....|+..|...+..-+..|.+-+....-..+.+.+..+.......+.. .--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3444444444555666677777777666544433333333332222222333332222222221111 111244556666
Q ss_pred CCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-C-CChhHHHHHHHHHHhcCCHHH-HH
Q 043580 398 EQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSI-T-LNDNLSAAIIDMYAKCGSINT-AF 474 (665)
Q Consensus 398 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~-A~ 474 (665)
.+.++++.-.+.....|++-+...-+....+.....+++.|+.+|+++++... . -|..+|..++-....+.++.- |.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 67888888888888888766665555566666778899999999999987632 1 234566555433222222211 22
Q ss_pred HHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCC
Q 043580 475 EVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNV 554 (665)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 554 (665)
.++ .+. +-.+.|..++..-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|++-++++. .+
T Consensus 321 ~v~-~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di 393 (559)
T KOG1155|consen 321 NVS-NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DI 393 (559)
T ss_pred HHH-Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hc
Confidence 221 111 2455677778888888999999999999999875 4456788889999999999999999999998 67
Q ss_pred CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 555 EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 555 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
.| |...|-.|..+|.-.+.+.-|+-.|+++. .+| |+..|.+|+.+|.+.++.++|+..|++++.....+...+..|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 89 99999999999999999999999999986 455 8999999999999999999999999999999888889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 043580 632 NIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++|-+.++.++|.++|++..+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998876
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.3e-14 Score=140.15 Aligned_cols=281 Identities=10% Similarity=0.020 Sum_probs=227.4
Q ss_pred CCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCChhHHHHHHHHHHccCcHHHHHHH
Q 043580 367 GMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAG--VKPNEITMVSVFCAIASSGTLKEGRWA 441 (665)
Q Consensus 367 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 441 (665)
-+..+|...|..+... ...+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+ +-+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3467888888886543 34566778899999999999999999988743 12355677777665432 122222
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 442 HEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
+..-+-.--+..+.+|.++..+|.-+++.+.|++.|++..+..| ...+|+.+..-+.....+|.|...|+..+... +-
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch
Confidence 32222222356678999999999999999999999999999755 56788888888899999999999999887642 23
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...|-.+...|.+.++++.|+-.|+++. .++| +..+...+...+.+.|+.++|+.+++++. ...++..-..-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 45577888899999999999999999998 7899 88889999999999999999999999986 334666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..+...+++++|...++++.++.|++...+..+|++|.+.|+.+.|+.-|.=+.+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 7888999999999999999999999999999999999999999999999888877654
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.6e-12 Score=116.02 Aligned_cols=287 Identities=10% Similarity=0.072 Sum_probs=209.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCChhHHHHHHHHHHccC
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKR----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGV--KPNEITMVSVFCAIASSG 433 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~ 433 (665)
..++....+.+++..-.+..... +...-+....+.-...++++|+.+|+++.+... --|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34454555555555544444322 222333334444556788999999998887631 124556666654432221
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSD 512 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 512 (665)
. ..++..-.-.--+..+.++..+.+.|.-.++.++|...|++..+..| ....|+.|..-|...++...|++-+++
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 12222222221234456677788888889999999999999988744 456788888999999999999999999
Q ss_pred HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC--CC
Q 043580 513 LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK--AD 589 (665)
Q Consensus 513 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 589 (665)
.++-+ +.|-..|-.+.++|.-.+...-|+-+|++.. .+.| |...|.+|.++|.+.++.++|+..|.+...- .+
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99864 5588899999999999999999999999988 6689 8999999999999999999999999998633 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 590 VVIWGTLLAASRIHGNVEVGERAAKSLAG-------LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...+..|...+.+.++.++|..++++.++ ..|.-..+...|+.-+.+.+++++|-.+......-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 58889999999999999999999999876 344444556678888888899988887766665543
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7.4e-11 Score=109.44 Aligned_cols=466 Identities=12% Similarity=0.074 Sum_probs=288.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 043580 123 YTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCV 202 (665)
Q Consensus 123 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (665)
|-...+-=-..+++..|.++|++..+.. .-+...|...+.+-.+......|+.+++..+..-+..|..= -..+.+--.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHH
Confidence 3333333345667778888888888765 33566677777777777888888888888877655544432 223334445
Q ss_pred cCCHHHHHHHHhhccC--CCcccHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHhhcCChhHHHHHHHHH
Q 043580 203 CSSLVEARSLFDEMKE--RNIVSWNVMLNGFAKAGLVELARELFERIP--SKDVVSWGTMIDGYLQVERLSEALTMYRAM 278 (665)
Q Consensus 203 ~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 278 (665)
.|++..|.++|+...+ |+...|.+.|+--.+.+.++.|..++++.. .|++.+|--....=.++|+...+..+|...
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6778888888877764 777777777777777777777777776654 366666666666666666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHh----hcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhccCCch
Q 043580 279 LCDGIAPNDVMIVDLISAC----GRAMAFGEGLQIHSIIVKAGFDCY-DFIQATIIHFYAACGRINLARLQFELGIKDHI 353 (665)
Q Consensus 279 ~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 353 (665)
.+. --|...-..++.++ .+...++.|.-+|+..+..-.... ...+...+..--+.|+.......+-
T Consensus 234 ie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv------- 304 (677)
T KOG1915|consen 234 IEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV------- 304 (677)
T ss_pred HHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh-------
Confidence 542 11222222222222 233445555555555544321110 2223333333333333222111110
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-------HHH
Q 043580 354 ASWNALIAGFIRNGMIEDARQLFNNMQKRDV---YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI-------TMV 423 (665)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~ 423 (665)
.+-.--++.+.+.|+ .+|--.+..--..|+.+...++|++.... ++|-.. .|.
T Consensus 305 ----------------~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 305 ----------------GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred ----------------hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 000001222223333 35555555556678888888888887764 455321 111
Q ss_pred HHHHHH---HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHHchhCCCCcchHHHHHHH
Q 043580 424 SVFCAI---ASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMY----AKCGSINTAFEVFYHIRDRTTSVSPWNAIICG 496 (665)
Q Consensus 424 ~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 496 (665)
-+=-+| ....+.+.+.++++..++ -++....++..+--+| .++.++..|.+++.......|....|...|..
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 111111 345678888888888877 3444445665544444 46788889999999888888888888888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
-.+.+.++.+..++++.++-+ +-|..+|......-...|+.+.|..+|+-..+...+......|.+.|+.-...|.++.
T Consensus 447 ElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 888999999999999999864 4477788888887788899999999999988763333345567777777778899999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc
Q 043580 577 AEEVIRSMP-MKADVVIWGTLLAASR-----IHG-----------NVEVGERAAKSLAG 618 (665)
Q Consensus 577 A~~~~~~~~-~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 618 (665)
|..+++++. ..+...+|.++..--. ..| +...|..+|+++..
T Consensus 526 aR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 999998886 2344456655554322 333 56778888888853
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.9e-12 Score=118.60 Aligned_cols=265 Identities=11% Similarity=0.034 Sum_probs=197.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
++.......+-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+++. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44445555566667788888888888877653 445555555555666667666655555555554 3445567777777
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
.|...|+..+|++.|.+.....|. ...|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 777788899999998888776333 457888888888888899988888777664 122223344455567888889999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043580 542 ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--------MKA-DVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.++|.+.. ++.| |+..++-+.-.....+.+.+|..+|+... .++ ...+++.|+.+|.+.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99998887 7788 78888888888888888999998887764 112 44567888888999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+++++.+.|.++.++..+|-+|...|+.+.|.+.|.+++..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998888664
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.2e-10 Score=108.12 Aligned_cols=439 Identities=14% Similarity=0.083 Sum_probs=275.1
Q ss_pred cCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee-eHHHHHHHHhhcCChhHHHHHHH
Q 043580 203 CSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS--KDVV-SWGTMIDGYLQVERLSEALTMYR 276 (665)
Q Consensus 203 ~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 276 (665)
++++..|.++|+.... +++..|--.+..-.+...+..|..++++... |.+. .|---+..=-..|+...|.++|.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445555555555553 2333444444444555555555555554433 2111 11111222223455556666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC------
Q 043580 277 AMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK------ 350 (665)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 350 (665)
+..+ ..|+...+.+.|..-.+.+.++.|..+++..+-. .|+...+-..+..-.+.|+...+..+++..+.
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 5554 4566666666665555555666666666555432 24555555555555556666655555554332
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHhCCCchHHHHH--------HHHHHHCCCCC
Q 043580 351 DHIASWNALIAGFIRNGMIEDARQLFNNMQKR-----DVYSWSAMISGYAQNEQPNMALEL--------FHGMVDAGVKP 417 (665)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~p 417 (665)
.+...+.++..--.++..++.|.-+|+-..+. ....|......=-+-|+.....+. |+.+.+.+ +-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 12223444444445566667776666544322 122343333333344554433332 34444443 45
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh-HHHHHHH--------HHHhcCCHHHHHHHHHHchhCCC-Cc
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN-LSAAIID--------MYAKCGSINTAFEVFYHIRDRTT-SV 487 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~~A~~~~~~~~~~~~-~~ 487 (665)
|-.++-..++.....|+.+...++++.++..-.+.+.. .+.-.|- .-....+.+.+.++++...+.-| ..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 66677778888888899999999999998754332221 1111111 11356789999999999888733 44
Q ss_pred chHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHH
Q 043580 488 SPWNA----IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYG 562 (665)
Q Consensus 488 ~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 562 (665)
.+|.. ......++.+...|.+++...+. .-|-..+|...|..-.+.+++|....++++.. ...| |..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHH
Confidence 45444 34444578899999999988764 58888999999999999999999999999999 5688 899999
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH---
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMKADV----VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA--- 635 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--- 635 (665)
..+..-...|+.+.|..+|+-+...|.. ..|.+.+.--...|.+++|..+|+++++..+... .+...++.-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcccc
Confidence 9999889999999999999999877643 4566666666789999999999999998877655 4665555433
Q ss_pred --hcC-----------ChhHHHHHHHHHHh
Q 043580 636 --DAG-----------RWEDAFSIRKEMRD 652 (665)
Q Consensus 636 --~~g-----------~~~~A~~~~~~~~~ 652 (665)
..| ....|+++|+++..
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 334 56678888888754
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.9e-12 Score=128.13 Aligned_cols=278 Identities=10% Similarity=0.080 Sum_probs=173.6
Q ss_pred cCCHHHHHHHHhhcCCC--CcchHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHH--HHHHHHHccCcHHHHHH
Q 043580 366 NGMIEDARQLFNNMQKR--DVYSWSA-MISGYAQNEQPNMALELFHGMVDAGVKPNEITMV--SVFCAIASSGTLKEGRW 440 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~--~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 440 (665)
.|+++.|++.+....+. ++..+.. ...+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544332 1222222 233335666666666666666552 34433222 22445566666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cc--------hHHHHHHHHHhcCChHHHHHHHH
Q 043580 441 AHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VS--------PWNAIICGLAMHGDANLTLKIYS 511 (665)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~--------~~~~l~~~~~~~~~~~~a~~~~~ 511 (665)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.... .. +|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 333455566666777777777777777666665211 11 22333333334455566666666
Q ss_pred HHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C
Q 043580 512 DLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D 589 (665)
Q Consensus 512 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~ 589 (665)
.+.+. .+.+......+..++...|+.++|.+.+++..+. .|+..... +......++.+++.+.+++.. ..| +
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65443 2456677778888888888888888888877743 44553322 233335588888888887775 334 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 590 VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+..+..+...|.+.|++++|...++++++..|++.. +..|+.++.+.|+.++|.++|++.+..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556777888888888888888888888888888765 667888888888888888888877653
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2e-13 Score=132.05 Aligned_cols=245 Identities=12% Similarity=0.096 Sum_probs=200.6
Q ss_pred CchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHH
Q 043580 399 QPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSI--TLNDNLSAAIIDMYAKCGSINTAFEV 476 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 476 (665)
+..+|+..|.++... +.-+......+..+|...++++++.++|+.+.+... .-+..+|.+.+-.+-+. -+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467899999995554 333446667788999999999999999999986432 23557777766443221 12222
Q ss_pred H-HHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 477 F-YHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 477 ~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
+ +.+... +..+.+|.++..+|.-+++.+.|++.|++.+.. .| ...+|+.+..-+.....+|.|...|+... +
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~ 483 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G 483 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c
Confidence 2 223333 466889999999999999999999999999985 55 67888888888889999999999999988 6
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+.| +-..|-.|.-.|.+.++++.|+-.|+++. ..| +......++..+.+.|+.|+|+.+++++.-++|.++...+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 677 56667778999999999999999999987 556 566777888889999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 043580 631 SNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+.++...+++++|+..++++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=4.7e-12 Score=125.35 Aligned_cols=278 Identities=10% Similarity=-0.013 Sum_probs=196.2
Q ss_pred cCChHHHHHHHHhccCC--chh-hHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc--hHH--HHHHHHHhCCCchHHHHHH
Q 043580 335 CGRINLARLQFELGIKD--HIA-SWNALIAGFIRNGMIEDARQLFNNMQKRDVY--SWS--AMISGYAQNEQPNMALELF 407 (665)
Q Consensus 335 ~g~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~l~~~~~~~~~~~~a~~~~ 407 (665)
.|+++.|++........ ++. .|.....+..+.|+++.|...+.++.+.++. ... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35555555555433321 122 2222334446677777777777776543222 122 2245667778888888888
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHc
Q 043580 408 HGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN-------LSAAIIDMYAKCGSINTAFEVFYHI 480 (665)
Q Consensus 408 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~ 480 (665)
+++.+.. +-+...+..+...+.+.|+++++..++..+.+.+..++.. .+..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8777753 2344556666777777788888888888877765543221 2223333334455667777788877
Q ss_pred hhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-Ch
Q 043580 481 RDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DL 558 (665)
Q Consensus 481 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~ 558 (665)
... +.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+. .| |+
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~ 328 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTP 328 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCH
Confidence 665 557778889999999999999999999999884 5555322 233444569999999999999854 78 78
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
..+..+...+.+.|++++|.+.|+.+. ..|+...+..+..++.+.|+.++|..++++.+.+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888899999999999999999999986 66999999999999999999999999999998754
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.1e-12 Score=116.59 Aligned_cols=190 Identities=10% Similarity=0.019 Sum_probs=158.2
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVSP-WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
.+.-.|+.-.|..-|+..+...|.... |--+...|...++.++....|.+..+.+ +-|+.+|..-.+...-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 345578889999999999887444444 8888899999999999999999999875 55788888888888889999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 542 ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
..-|++.+ .+.| +...|-.+.-+..+.+++++++..|++...+ .-+..|+-....+...+++++|.+.|.++++
T Consensus 414 ~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999998 5689 7888888888889999999999999998733 4578888899999999999999999999999
Q ss_pred cCCC------CCchHHHHH--HHHHhcCChhHHHHHHHHHHhCCCcc
Q 043580 619 LQPS------HGPSRVLLS--NIYADAGRWEDAFSIRKEMRDCGMKR 657 (665)
Q Consensus 619 ~~p~------~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~ 657 (665)
+.|. ++..+.+-+ .+-++ +++..|.++++++++.+.+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 9999 554444322 22233 89999999999998876543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.4e-14 Score=134.37 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=106.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhc-CC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccC
Q 043580 359 LIAGFIRNGMIEDARQLFNNM-QK----RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSG 433 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 433 (665)
+...+.+.|++++|+++++.. .. .++..|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 455666677777777777432 21 24555666666666778888888888888765422 34445555555 6778
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcchHHHHHHHHHhcCChHHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVSPWNAIICGLAMHGDANLTLKIY 510 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 510 (665)
++++|.+++....+.. +++..+..++..+.+.++++++.++++.+... +.+...|..+...+.+.|++++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888777665433 45555667778888889999998888887654 345667788888889999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCC
Q 043580 511 SDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKA 588 (665)
Q Consensus 511 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 588 (665)
++..+.. +.|......++..+...|+.+++.++++...+. . ..|+..+..++.+|...|+.++|...+++.. .+.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999863 335778888999999999999999999888865 2 3377788889999999999999999999876 334
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
|+.....+..++...|+.++|..+.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 788888899999999999999999988765
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=7.2e-12 Score=124.82 Aligned_cols=280 Identities=12% Similarity=0.058 Sum_probs=160.5
Q ss_pred cCCHHHHHHHHhhcCCC--Cc-chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh--HHHHHHHHHHccCcHHHHHH
Q 043580 366 NGMIEDARQLFNNMQKR--DV-YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI--TMVSVFCAIASSGTLKEGRW 440 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 440 (665)
.|+++.|++.+....+. ++ ..+-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444332 11 12223334455556666666666665543 23322 22223455555666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 043580 441 AHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWN----AIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
.++.+.+.. +-++.+...+...+...|+++.|.+.+..+.+. ..+...+. ....+....+..+.+.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 223345555666666666666666666666654 12222221 111111222222222334444433
Q ss_pred cC---CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhH---HHHHhhHhhhcCChHHHHHHHHhCC-CCC
Q 043580 516 RN---IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKH---YGCMVDLLGRAGQLEDAEEVIRSMP-MKA 588 (665)
Q Consensus 516 ~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 588 (665)
.. .+.+...+..+...+...|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++.. ..|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 21 1236677777778888888888888888888754 554331 1111112233467777788777765 334
Q ss_pred -CH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 589 -DV--VIWGTLLAASRIHGNVEVGERAAK--SLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 589 -~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++ ....++++.+.+.|++++|.+.++ ++.+..|++.. +.+|+.++.+.|+.++|.++|++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34 566788888889999999999998 57778887766 55889999999999999999988755
No 51
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.7e-10 Score=108.05 Aligned_cols=439 Identities=12% Similarity=0.090 Sum_probs=232.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHH--HHHHHH--hcC
Q 043580 160 SVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNV--MLNGFA--KAG 235 (665)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--ll~~~~--~~~ 235 (665)
+=++.+.+.|++++|.+....++..+ +.+...+..-+-++.+.+++++|+.+.+.-.... +++. +=++|| +.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 34455566677777777777777666 4455555555556666777777775544332211 1111 123332 455
Q ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcccchhhHHHHHHHHH
Q 043580 236 LVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV-MIVDLISACGRAMAFGEGLQIHSIIV 314 (665)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 314 (665)
..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+++..--.. .-..++.+-.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------------- 157 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------------- 157 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----------------
Confidence 66666666654444443344444455555666666666666665543221111 0111111000
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHH---HHHHHhcCCHHHHHHHHhhcC--------CCC
Q 043580 315 KAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNAL---IAGFIRNGMIEDARQLFNNMQ--------KRD 383 (665)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~--------~~~ 383 (665)
...+. +.+........+|..+ ...++..|++.+|+++++... ..|
T Consensus 158 -----------------------~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 158 -----------------------ALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred -----------------------hhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 00000 1111111111122222 233455666666666666551 111
Q ss_pred c----------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHH---HHHHccCcHHH--HHHHHHHH---
Q 043580 384 V----------YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVF---CAIASSGTLKE--GRWAHEYV--- 445 (665)
Q Consensus 384 ~----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~~--- 445 (665)
. ..--.+.-.+...|+..+|..++...+... .+|........ .++..-.++-. ....++..
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~ 292 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK 292 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH
Confidence 0 122345556777889999999888888765 44443322222 22222211111 11111111
Q ss_pred --------HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHH-H-hcCChHHHHHHHHHHHH
Q 043580 446 --------LNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGL-A-MHGDANLTLKIYSDLEK 515 (665)
Q Consensus 446 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~a~~~~~~~~~ 515 (665)
......-....-+.++.+| .+..+.+.++...+....|.. .+.+++..+ . +...+..+.+++...-+
T Consensus 293 l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 1000000011112233333 355566666666655543333 334444333 2 23357788888888776
Q ss_pred cCCCCChHHHHHHHHHhcccChHHHHHHHHH--------HhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--
Q 043580 516 RNIKLNSITFIGVLSTCCHAGLVDLGERYFK--------SMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-- 585 (665)
Q Consensus 516 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (665)
.............+......|+++.|.+++. .+.+ +.-.+.+...+...|.+.++.+.|..++.+..
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 5322234566667777888999999999999 4443 23345666778888888888887887777664
Q ss_pred ---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 586 ---MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 586 ---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
..+. ...+..+...-.+.|+-++|...++++++.+|++......|..+|+.. +.+.|..+-+.
T Consensus 447 ~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 447 WRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 1122 223333444445779999999999999999999999999998888876 44666555433
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=4.1e-11 Score=119.43 Aligned_cols=225 Identities=11% Similarity=0.032 Sum_probs=131.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHH-HHHHHccCcH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSV-FCAIASSGTL 435 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~ 435 (665)
...+...|+++.|...++.+.+. ++.....+...+...|++++|.+.+..+.+.++. +...+..+ ..+.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------ 232 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------ 232 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH------
Confidence 33344444444444555544422 4455666666677777777777777777666532 22222111 0000
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLE 514 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 514 (665)
..++..-......+...+.++..... +.++..+..+...+...|+.++|.+++++..
T Consensus 233 ----------------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 233 ----------------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred ----------------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 00010001111222333333333322 2355667777777777777888888777777
Q ss_pred HcCCCCChHH---HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-Ch--hHHHHHhhHhhhcCChHHHHHHHHh--C-C
Q 043580 515 KRNIKLNSIT---FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DL--KHYGCMVDLLGRAGQLEDAEEVIRS--M-P 585 (665)
Q Consensus 515 ~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~ 585 (665)
+. .||... ...........++.+.+.+.+++..+. .| |+ ....++...+.+.|++++|.+.|+. . .
T Consensus 291 ~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 291 KK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred hh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 75 333331 111122223346777888888887754 66 55 6677888888888999999998884 3 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 586 MKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
..|+...+..+...+.+.|+.++|.++++++++
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568888888888888889999999988888754
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=2.2e-08 Score=96.94 Aligned_cols=507 Identities=12% Similarity=0.112 Sum_probs=245.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCC-----CCcchhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcC
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCST-----LDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQND 134 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 134 (665)
+|-.-+..+.++|++......|+.... .....|...+...-..+-++-+..++++..+-++..-+-.|..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 344444445555555555555544322 123344444444444455555555555544444444455555555555
Q ss_pred ChHHHHHHHHHhHHcC------CCCCHhhHHHHHHHHhccCChHHHHH---HHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 135 CWREALEVFRDMRILG------VIPNEVTLASVISSSVHLGGIWECRM---LHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 135 ~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
++++|-+.+....... .+-+...|.-+-....+..+...... ++..+...-...--..|.+|.+.|.+.|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 5555555554443211 12233344444444333333322221 12121111111123455566666666666
Q ss_pred HHHHHHHHhhccCC--CcccHHHHHHHHHhc----------------C------CHHHHHHHHhhCCC------------
Q 043580 206 LVEARSLFDEMKER--NIVSWNVMLNGFAKA----------------G------LVELARELFERIPS------------ 249 (665)
Q Consensus 206 ~~~a~~~~~~~~~~--~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~------------ 249 (665)
+++|..++++..+. .+.-++.+.++|++- + +++-....|+.+..
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 66666666555431 112233333332211 1 12222333333321
Q ss_pred ---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCC
Q 043580 250 ---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPN------DVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDC 320 (665)
Q Consensus 250 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 320 (665)
.++..|..-+ -+..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+...+.
T Consensus 344 Qn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 344 QNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred cCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 1222333222 22356667777777777654 3332 2345566667777888888888888777765443
Q ss_pred c---hhHHHHHHHHHHhcCChHHHHHHHHhccC---------------------CchhhHHHHHHHHHhcCCHHHHHHHH
Q 043580 321 Y---DFIQATIIHFYAACGRINLARLQFELGIK---------------------DHIASWNALIAGFIRNGMIEDARQLF 376 (665)
Q Consensus 321 ~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~a~~~~ 376 (665)
- ..++.....+-.+..+++.|.++.+.... .+...|...++..-..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 34555555666667777777777754221 12234555555556666777777777
Q ss_pred hhcCCCCcchH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-HHHHHHHHH---HccCcHHHHHHHHHHHHHcC
Q 043580 377 NNMQKRDVYSW---SAMISGYAQNEQPNMALELFHGMVDAGVKPNEI-TMVSVFCAI---ASSGTLKEGRWAHEYVLNNS 449 (665)
Q Consensus 377 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~ 449 (665)
+.+.+-.+.+= -.....+-.+.-++++.++|++-...-..|+.. .++..+.-+ .....++.|..+|+.+++ |
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 76655422222 122222333445666666666544433334432 223323222 223356777777777776 4
Q ss_pred CCCChh--HHHHHHHHHHhcCCHHHHHHHHHHchhCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 043580 450 ITLNDN--LSAAIIDMYAKCGSINTAFEVFYHIRDRTT---SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSIT 524 (665)
Q Consensus 450 ~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 524 (665)
.+|... +|-.....--+-|-...|+.++++.....+ -...|+..|.-....=.+.....+|++.++. -|+...
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~ 657 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKA 657 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHH
Confidence 443331 111112222234566666777766555411 1235666665544444455555666666663 454433
Q ss_pred HH---HHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCCh
Q 043580 525 FI---GVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 525 ~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 574 (665)
-. .....-++.|..+.|..++....+- +.| +...|.+.=..=.+.|+-
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~--~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQI--CDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhc--CCCcCChHHHHHHHHHHHhcCCH
Confidence 22 2233445567777777776665542 334 555566655555566663
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=9.6e-10 Score=98.34 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHchhC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHH
Q 043580 469 SINTAFEVFYHIRDR---TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
++.-|...|+.+-+. ..++..-..+.+.+.-..++++++-++.....-- ..|...--.+.++.+..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 344455555554443 2233344556666666667777777777666543 333333334677888888888888888
Q ss_pred HHhHhhcCCCCChhHHH-HHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 546 KSMKSVYNVEPDLKHYG-CMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLA-ASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 546 ~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
-++... .++ |..+|. .|+++|.+.++++-|.+++-++..+.+..++..++. -|.+.+.+--|.+.+..+-.++|..
T Consensus 417 ~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 417 IRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 877632 222 444444 467788888888888888877765555556555554 4888888888888888877777754
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.5e-11 Score=113.80 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=166.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRT-TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|.+.+++..... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 4556677888888999999999998887763 345677888888999999999999999998864 44667788888889
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|.+.+++..+. ...| ....+..+..++...|++++|...+++.. ..| +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999864 2233 56677788999999999999999999876 233 567888899999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888888999999999999999998887553
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-09 Score=104.48 Aligned_cols=270 Identities=12% Similarity=0.071 Sum_probs=176.4
Q ss_pred HHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHH
Q 043580 363 FIRNGMIEDARQLFNNMQKRDV---YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGR 439 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 439 (665)
+...+++.+..++++.+.+.++ ..+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.--|...|+..+|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 3344444555555555443322 23344444555566655555555555553 2334455555555555566666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043580 440 WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI 518 (665)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 518 (665)
++|.+......... ..+-.....|.-.|..+.|+..+....+.-| ....+--+..-|.+.++.+.|.+.|.+.....
T Consensus 333 ry~SKat~lD~~fg-paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 333 RYFSKATTLDPTFG-PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHHHhhcCcccc-HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 66666544321111 2345566667777777777777766655522 22234445556777788888888888777642
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVY----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVV 591 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 591 (665)
+.|+..++-+.-.....+.+.+|..+|+...... .-.+ ...+++.|..+|.+.+++++|+..+++.. .+.+..
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 4466677777777777888888888888776311 1112 45568888999999999999999998876 445788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
++.+++..|...|+++.|+..|.+++.+.|++..+...|+.+..
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 88899999999999999999999999999999887777766543
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=3.9e-10 Score=99.68 Aligned_cols=290 Identities=11% Similarity=0.137 Sum_probs=185.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQ 344 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (665)
+++.++|.++|-+|.+. -+-+..+-.+|-+.+.+.|..|.|+++.+.+.++. |...-..
T Consensus 48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr----------------- 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQR----------------- 106 (389)
T ss_pred hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHH-----------------
Confidence 56788888888888763 12233444566667777788888888877776642 1111000
Q ss_pred HHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhH
Q 043580 345 FELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRD---VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 421 (665)
....-.|.+-|...|-+|.|+.+|..+.+.+ ......++..|....+|++|+++-+++.+.+-.+..+-
T Consensus 107 --------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 107 --------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred --------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 0122345566777788888888888877643 34566788888889999999999888887665444322
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH 500 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 500 (665)
.. ..|..+...+....+.+.|...+.+..+. +..+..--.+...+...
T Consensus 179 IA-------------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 179 IA-------------------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK 227 (389)
T ss_pred HH-------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc
Confidence 11 11333444555556677777777776665 33344555566677778
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 580 (665)
|+++.|.+.|+...+.+..--+.+...|..+|.+.|+.++....+.++.+. .+....-..+.+.-....-.+.|...
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHH
Confidence 888888888888887754444567777888888888888888888887743 45555555555555444445555554
Q ss_pred -HHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHh
Q 043580 581 -IRSMPMKADVVIWGTLLAASRI---HGNVEVGERAAKSLA 617 (665)
Q Consensus 581 -~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 617 (665)
.+.+..+|+...+..|+..... .|...+....++.++
T Consensus 305 l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 305 LTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 4555677888888777766543 333455555555554
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=4.8e-10 Score=102.38 Aligned_cols=286 Identities=12% Similarity=0.030 Sum_probs=176.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQ 344 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (665)
.|++..|.++..+-.+++-.| ...|..-..+....|+.+.+...+.++.+..-.++..+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt----------------- 158 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT----------------- 158 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH-----------------
Confidence 677888888877776665443 34555566666677777777777777666532333333333
Q ss_pred HHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhc---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhH
Q 043580 345 FELGIKDHIASWNALIAGFIRNGMIEDARQLFNNM---QKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 421 (665)
..+.....|+++.|..-++++ ...++........+|.+.|++.....++..|.+.|.--+...
T Consensus 159 --------------rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 159 --------------RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 333444444444444444433 344677788888888888888888888888888875544322
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH 500 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 500 (665)
-.. ...++..+++-....+..+.-...|+..... ..++..-..++.-+...
T Consensus 225 ~~l----------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 225 ARL----------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHH----------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 100 0112222333333333333344455555544 34455566666667777
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEE 579 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 579 (665)
|+.++|.++.++..+++..|+ ....-.+.+-++...-++..++..+. .| ++..+.+|...|.+.+.|.+|.+
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~---h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ---HPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred CChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777777666665 12222445566666666666666643 34 45677777777777777777777
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 580 VIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 580 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
.|+... ..|+..+|..+..++.+.|+.+.|.+..++++
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777654 55777777777777777777777777777765
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=2.8e-08 Score=96.26 Aligned_cols=599 Identities=12% Similarity=0.075 Sum_probs=340.2
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHH------HhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhh
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIF------KSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACN 93 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 93 (665)
.|+.......=++|+..- .--.+|..-+ -.+..|+...|-.+-+++ +.+.-.+.+| +..|-
T Consensus 40 sp~k~~~~lYERal~~lp---~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~------er~lv~mHkm----pRIwl 106 (835)
T KOG2047|consen 40 SPDKQRNLLYERALKELP---GSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCF------ERCLVFMHKM----PRIWL 106 (835)
T ss_pred CChHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHhhccCCCChHHHHHHHHH------HHHHHHHhcC----CHHHH
Confidence 666666655557777752 2223333333 135567777776666555 3445555555 55787
Q ss_pred HHHHHHHhcCChhhHHHhhhcCCC-----CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhcc
Q 043580 94 IMISGYIRNDRLNDAREVFDKTPI-----KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHL 168 (665)
Q Consensus 94 ~ll~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 168 (665)
..+..+.++|++......|++... .....|...+......+-++-+..++.+..+. ++..-.--|..++..
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhc
Confidence 888888999999999998886432 34467888999888999999999999999865 333456667788899
Q ss_pred CChHHHHHHHHHHHHHh------cCCchhHHHHHHHHHhccCCH---HHHHHHHhhccC--CCc--ccHHHHHHHHHhcC
Q 043580 169 GGIWECRMLHGLVIKLM------IDGFVIISTNLLNMYCVCSSL---VEARSLFDEMKE--RNI--VSWNVMLNGFAKAG 235 (665)
Q Consensus 169 ~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~--~~~--~~~~~ll~~~~~~~ 235 (665)
+++++|.+.+...+... -+.+...|..+-+..++.-+. -....+++.+.. +|. ..|++|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 99999999888776432 345666777776666655432 234456666654 443 47999999999999
Q ss_pred CHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHH--HCCCCCCHHHHHHHHHHhhcccchhhHHHHHH
Q 043580 236 LVELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAML--CDGIAPNDVMIVDLISACGRAMAFGEGLQIHS 311 (665)
Q Consensus 236 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 311 (665)
+++.|..++++... -++..|..+.++|++-....-+..+ + +. +.|-+-+.......+..+...-+.. -.++.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr--~~~lN 338 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLELHMARFESLMNRR--PLLLN 338 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHHHHHHHHHHHHhcc--chHHH
Confidence 99999999998775 3555677777777643221111111 0 11 1111111111111111110000000 00000
Q ss_pred H-HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc---cCC------chhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 043580 312 I-IVKAGFDCYDFIQATIIHFYAACGRINLARLQFELG---IKD------HIASWNALIAGFIRNGMIEDARQLFNNMQK 381 (665)
Q Consensus 312 ~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 381 (665)
. +...+ +.+...+..-+ -...|+..+....+... +.| -...|..+.+.|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn-~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQN-PHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcC-CccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 0 00100 11111111111 11122222222222211 111 112344555555555555555555555443
Q ss_pred CCcc-------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-----------------CChhHHHHHHHHHHccCcHHH
Q 043580 382 RDVY-------SWSAMISGYAQNEQPNMALELFHGMVDAGVK-----------------PNEITMVSVFCAIASSGTLKE 437 (665)
Q Consensus 382 ~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------------p~~~~~~~ll~~~~~~~~~~~ 437 (665)
-+-. +|......=.++.+++.|+++.+......-. -+...+...+..-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 2211 2333333333445555555555544321101 122234444444555677888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCc-chHHHHHHHHHh---cCChHHHHHHHH
Q 043580 438 GRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSV-SPWNAIICGLAM---HGDANLTLKIYS 511 (665)
Q Consensus 438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~ 511 (665)
...+++.+++..+.....+.| ....+-...-++++.+++++-... .|++ ..|+..+.-+.+ ....+.|..+|+
T Consensus 496 tk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 888999998877654333332 333445666788899999887776 3333 357766665543 346889999999
Q ss_pred HHHHcCCCCChHH--HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-C
Q 043580 512 DLEKRNIKLNSIT--FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-M 586 (665)
Q Consensus 512 ~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 586 (665)
+.++ |.+|...- |......-.+.|....|+.+++++.. ++++ -...|+..|.--...=-......+++++. .
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 9998 66664432 22222223346888899999999875 5666 35667776665444433444555565554 2
Q ss_pred CCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHhccC-CC-CCchHHHHHHHHHhcCChhHHHHH
Q 043580 587 KADVVIWGT---LLAASRIHGNVEVGERAAKSLAGLQ-PS-HGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 587 ~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
-|+...-.. +...-.+.|..+.|..+|....++- |. +...|...-..-.+.|+.+.-++.
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 255444333 2333457899999999998887764 43 344577777777888884444433
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.4e-07 Score=91.83 Aligned_cols=612 Identities=10% Similarity=0.009 Sum_probs=348.0
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCC---CcchhhHHH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL---DPVACNIMI 96 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll 96 (665)
+|-..++---+--|-+.+.+.......+.+++ +.+-...+.....-.+...|+-++|.......... +.++|..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 44444444444556677778888888888887 44444555555566666778899998888877664 456777666
Q ss_pred HHHHhcCChhhHHHhhhcCC---CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHH
Q 043580 97 SGYIRNDRLNDAREVFDKTP---IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWE 173 (665)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 173 (665)
-.+-...++++|...+.... +.|...|.-+.-.-++.++++..........+.. .-....|.....+..-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 66666778999999888644 3344566666666677788888888777777652 2234466777777778888888
Q ss_pred HHHHHHHHHHHhc-CCchhHHHHH------HHHHhccCCHHHHHHHHhhccCC--Ccc-cHHHHHHHHHhcCCHHHHHHH
Q 043580 174 CRMLHGLVIKLMI-DGFVIISTNL------LNMYCVCSSLVEARSLFDEMKER--NIV-SWNVMLNGFAKAGLVELAREL 243 (665)
Q Consensus 174 a~~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~--~~~-~~~~ll~~~~~~~~~~~a~~~ 243 (665)
|..+++...+... .|+...+... .......|.++.|.+.+...... |.. .-..-...+.+.++.++|..+
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8888888887763 4555544432 23455677788888777665531 211 223345567788899999999
Q ss_pred HhhCCC--CCeeeHHHHH-HHHhhcCChhHHH-HHHHHHHHCCCCCCHHHHH-HHHHHhhcccchhhHHHHHHHHHHhCC
Q 043580 244 FERIPS--KDVVSWGTMI-DGYLQVERLSEAL-TMYRAMLCDGIAPNDVMIV-DLISACGRAMAFGEGLQIHSIIVKAGF 318 (665)
Q Consensus 244 ~~~~~~--~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~ 318 (665)
+..+.. ||...|...+ .++.+-.+.-+++ .+|...-+. .|...... .=+.......-.+....++....+.|+
T Consensus 242 y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 242 YRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 888875 4444444443 4443333333333 555555432 12111111 111111112223334455666666666
Q ss_pred CCchhHHHHHHHHHHhcCChHHH---HHHHH-------------hc--cCCchhh--HHHHHHHHHhcCCHHHHHHHHhh
Q 043580 319 DCYDFIQATIIHFYAACGRINLA---RLQFE-------------LG--IKDHIAS--WNALIAGFIRNGMIEDARQLFNN 378 (665)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a---~~~~~-------------~~--~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 378 (665)
++-- ..+...|-.-...+-. ...+. .+ -+|.... +-.++..+-+.|+++.|+..++.
T Consensus 320 p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5432 2222222221111110 11111 11 1344443 34577888899999999999998
Q ss_pred cCCCCcch---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CC
Q 043580 379 MQKRDVYS---WSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT--LN 453 (665)
Q Consensus 379 ~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~ 453 (665)
.....+.. |-.-...+...|+++.|..++++..+.. .||...-..-..-..+++..++|.++...+.+.|.. .+
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 88776554 4444577888899999999999888764 455544445566677888899999888888776641 01
Q ss_pred hh----HH--HHHHHHHHhcCCHHHHHHHHHHchhC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 454 DN----LS--AAIIDMYAKCGSINTAFEVFYHIRDR-------TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 454 ~~----~~--~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
.. +| ..=..+|.+.|++..|.+-|..+... +-|..+| |.+.|-+..=+++++.--.. ..
T Consensus 476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhty------c~rk~tlrsYv~ll~~~d~L--~~ 547 (700)
T KOG1156|consen 476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTY------CMRKGTLRSYVELLEWEDNL--RS 547 (700)
T ss_pred HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHH------HHhcCcHHHHHHHHHHHHhh--cc
Confidence 00 11 11234566777777777666555443 1111111 22333332222222211111 11
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCC-CChhHHHH----HhhHhhhc-CChHHHHHHHHhCC---------
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVE-PDLKHYGC----MVDLLGRA-GQLEDAEEVIRSMP--------- 585 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~----l~~~~~~~-g~~~~A~~~~~~~~--------- 585 (665)
.+.-+. -...|++++-+|.+..... +....... .-+...+. .+-.+|...-+.+.
T Consensus 548 ~p~y~~----------Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s 617 (700)
T KOG1156|consen 548 SPYYLR----------AAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKS 617 (700)
T ss_pred ChHHHH----------HHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111111 1234555555555431000 10111111 11111111 11112221111110
Q ss_pred -----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 043580 586 -----MKADVVIWGTLLAASRIHGN-VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLP 659 (665)
Q Consensus 586 -----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 659 (665)
..||.+ -++..+.+..+ .++|..++.......++.+..+..-..+|.+.|++.-|.+.++++.......++
T Consensus 618 ~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~ 694 (700)
T KOG1156|consen 618 QSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPS 694 (700)
T ss_pred ccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Confidence 113333 34555666665 578999999999999999999999999999999999999999888765554444
Q ss_pred C
Q 043580 660 G 660 (665)
Q Consensus 660 ~ 660 (665)
-
T Consensus 695 l 695 (700)
T KOG1156|consen 695 L 695 (700)
T ss_pred c
Confidence 3
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=8.4e-09 Score=102.20 Aligned_cols=483 Identities=15% Similarity=0.097 Sum_probs=272.0
Q ss_pred hcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHh---ccCChHHHHHHHHHHHHHhcCCch-----hHHHHHHHHHhcc
Q 043580 132 QNDCWREALEVFRDMRILGVIPNEVTLASVISSSV---HLGGIWECRMLHGLVIKLMIDGFV-----IISTNLLNMYCVC 203 (665)
Q Consensus 132 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~ 203 (665)
..++.+.++.-+.....++...+..++..+...+. ..++.+++ ++-..+.....|.. ..+..++.-..+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766655443 44555555 33333333222221 1111111111111
Q ss_pred CCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHH
Q 043580 204 SSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLC 280 (665)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 280 (665)
+++ +.|...|..+--++...|+++.+.+.|++... .....|..+...|...|.-..|+.+++.-..
T Consensus 317 ~~~-----------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 317 KKF-----------QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hhh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 211 24566777777888888999999999988765 3456788888889999998899999887665
Q ss_pred CCCCCCHHH-HHHHHHHhh-cccchhhHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchh
Q 043580 281 DGIAPNDVM-IVDLISACG-RAMAFGEGLQIHSIIVKAG--F--DCYDFIQATIIHFYAACGRINLARLQFELGIKDHIA 354 (665)
Q Consensus 281 ~g~~p~~~~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (665)
..-.|+..+ +...-..|. +.+..+++..+...+.... . ...+..+..+.-+|...-.. ++..
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~------------a~~~ 453 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ------------ANLK 453 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc------------CCCh
Confidence 433354433 333333343 4567777777666665521 1 11112222222222211100 0000
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc
Q 043580 355 SWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS 431 (665)
Q Consensus 355 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 431 (665)
+ .+.....++.+.+++..+ .|+.+..-+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+..
T Consensus 454 s--------eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa 525 (799)
T KOG4162|consen 454 S--------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA 525 (799)
T ss_pred H--------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 0 000012233344444322 13333223333344555666666666666655444555555555555556
Q ss_pred cCcHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH--------------------------chhC-
Q 043580 432 SGTLKEGRWAHEYVLN-NSITLNDNLSAAIIDMYAKCGSINTAFEVFYH--------------------------IRDR- 483 (665)
Q Consensus 432 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------------------------~~~~- 483 (665)
.+++.+|+.+.+...+ .|...... ..-+..-..-++.+++...... +.-.
T Consensus 526 ~kr~~~Al~vvd~al~E~~~N~~l~--~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 526 QKRLKEALDVVDAALEEFGDNHVLM--DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhHHHHHHHHHHHHHhhhhhhhc--hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 6666666666555542 22110000 0001111112333333222111 1111
Q ss_pred --CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C------hHHHHHHHHHhcccChHHHHHHHHHHhHhhc
Q 043580 484 --TTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL--N------SITFIGVLSTCCHAGLVDLGERYFKSMKSVY 552 (665)
Q Consensus 484 --~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 552 (665)
+.+ +.++..+..-....+....-... +...-+.| + ...|......+.+.+..++|...+.+..
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~--- 677 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS--- 677 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---
Confidence 111 11222222211111110000000 11111122 2 1245556677788889999998888887
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCCchH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGER--AAKSLAGLQPSHGPSR 627 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~ 627 (665)
++.| ....|......+...|++++|.+.|.... ..| .+.+...+..++.+.|+...|.. ++..+++++|.++.+|
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 5567 78888888899999999999999998875 455 57888999999999999888888 9999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+.||.++.+.|+.+.|.+.|.-+.+..-
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999988654
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=4.7e-10 Score=102.47 Aligned_cols=279 Identities=11% Similarity=0.113 Sum_probs=207.8
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHH
Q 043580 366 NGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAH 442 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 442 (665)
.|++.+|+++..+-.+. ....|-.-+.+..+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 47777777777765433 333455555666777888888888888877533555556666677778888888888888
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC--CC-------cchHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 443 EYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT--TS-------VSPWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
+.+.+.+ +-.+.+.....++|.+.|++.....++..+.+.+ .+ ..+|..++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8877765 3344566777888888888888888888887751 11 225777777777777777777778777
Q ss_pred HHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHH
Q 043580 514 EKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVV 591 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 591 (665)
-.+ .+.++..-.+++.-+...|+.++|.++.++..++ +..|+ ...++ ...+-++.+.=++..++.. .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 654 3566777788888899999999999999999877 66665 22222 2335566666555555543 223568
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+.+|+..|.+.+.+.+|...++.++...|+... +..++.++.+.|+..+|.++.++.+-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8899999999999999999999999999998777 89999999999999999999999874
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.8e-11 Score=107.87 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=168.2
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCC
Q 043580 424 SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGD 502 (665)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 502 (665)
.+..+|.+.|.+.+|.+.++..++.. |-+.+|..|-+.|.+..++..|..++.+-.+..|. +.....+...+...++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 34445555555555555555444432 33344555666777777777777777776666343 3334456667777788
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 503 ANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 503 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
.+.|.++++...+.. +.+.....++...|.-.++++-|+.+++++.+. |+ .++..|+.+.-+|.-.+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888888764 456667777778888888899999999998876 54 367788888888888899999888888
Q ss_pred hCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 583 SMP---MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 583 ~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.. ..| ..+.|..+.......||+..|.+.++-++.-+|++...+..|+-+-.+.|+.++|+.++..+.+..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 875 223 467888888888899999999999999999999999999999999999999999999998886643
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.8e-09 Score=95.44 Aligned_cols=443 Identities=10% Similarity=0.041 Sum_probs=236.4
Q ss_pred HHhcCChhhHHHhhhcCCCC----CcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 99 YIRNDRLNDAREVFDKTPIK----CCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 99 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
+...+++..|..+++--..- ...+--.+..++...|++++|...++.+.+.. .|+...+..+.-+..-.|...+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34445555555555432211 11122334455566677777777777766643 34444444444444455555555
Q ss_pred HHHHHHHHHHhcCCchhHHH-HHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC--C
Q 043580 175 RMLHGLVIKLMIDGFVIIST-NLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK--D 251 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~ 251 (665)
+.+-... |+..... -|.+.-.+.|+-++-..+-..+.+.. .---++.+...-...+++|++++.++... +
T Consensus 111 ~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5544332 2222222 23344445555555554444443311 22223334444445567777777766543 2
Q ss_pred eeeHHH-HHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043580 252 VVSWGT-MIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIH 330 (665)
Q Consensus 252 ~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (665)
-...|. +.-+|.+..-++-+.++++--.+. ++-++...+.......+.-+-..|.+-.+.+.+.+-..-+ .+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~ 257 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIE 257 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHH
Confidence 223332 334566666677777777666653 3333333333333333322222233333333332211111 111
Q ss_pred HHHhc-----CChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCC------
Q 043580 331 FYAAC-----GRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQ------ 399 (665)
Q Consensus 331 ~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 399 (665)
-+++. .+-+.|.+++-..+..-+..-..|+-.|.+++++.+|..+.+++...++.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 12221 2234444444333333344455667778899999999999998876666655444444444443
Q ss_pred -chHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 043580 400 -PNMALELFHGMVDAGVKPNE-ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVF 477 (665)
Q Consensus 400 -~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 477 (665)
..-|...|+..-+.+..-|. ..-.++...+.-..+++++.-++..+...-...|...++ +..+++..|++.+|+++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHH
Confidence 33455555554444433222 223344455555567778887777776655445555444 778888889999999998
Q ss_pred HHchhC-CCCcchHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChHH-HHHHHHHhcccChHHHHHHHHHHhHhhcCC
Q 043580 478 YHIRDR-TTSVSPWNA-IICGLAMHGDANLTLKIYSDLEKRNIKLNSIT-FIGVLSTCCHAGLVDLGERYFKSMKSVYNV 554 (665)
Q Consensus 478 ~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 554 (665)
-.+... -.+..+|.. |..+|.+.++++.|..++-++ +-+.+..+ ...+..-|.+.+.+--|-+.|+.+. .+
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~l 490 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE---IL 490 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---cc
Confidence 887764 134445554 556778888888887665433 32333333 3444567788888888888888887 45
Q ss_pred CCChhHHH
Q 043580 555 EPDLKHYG 562 (665)
Q Consensus 555 ~p~~~~~~ 562 (665)
.|+++.|.
T Consensus 491 DP~pEnWe 498 (557)
T KOG3785|consen 491 DPTPENWE 498 (557)
T ss_pred CCCccccC
Confidence 78777663
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=2.9e-11 Score=101.77 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=139.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
...|.-+|...|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++.. .+.| +....|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 4456678888899999999998888864 4456688888899999999999999999988 5588 788889999999
Q ss_pred hhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH
Q 043580 569 GRAGQLEDAEEVIRSMPMKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 644 (665)
|..|++++|...|+++...| -..+|..++.+..+.|+++.|...++++++++|+.+.....++....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999987554 36788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 043580 645 SIRKEMRDCGM 655 (665)
Q Consensus 645 ~~~~~~~~~~~ 655 (665)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99988877654
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.9e-10 Score=99.73 Aligned_cols=291 Identities=10% Similarity=0.113 Sum_probs=189.4
Q ss_pred cCCHHHHHHHHhhcCCCCcchH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHccCcHHHHH
Q 043580 366 NGMIEDARQLFNNMQKRDVYSW---SAMISGYAQNEQPNMALELFHGMVDAGVKPNE---ITMVSVFCAIASSGTLKEGR 439 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~ 439 (665)
.++.++|.++|-+|.+.|+.++ -++.+.|-+.|..|.|+.+-+.+.++.--+.. ...-.+..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3556666666666665554443 34666666677777777776666653211111 12223445556667777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 440 WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS------PWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
.+|..+.+.+ ..-......|+..|-...++++|+++-.++...++... .|..+...+....+.+.|..++++.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777666533 22233445677788888888888888877776533321 3566677777788889999999988
Q ss_pred HHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH
Q 043580 514 EKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV 590 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 590 (665)
.+.+ +.....-..+.......|+++.|.+.++.+.+. +| -..+...|..+|...|+.++....+.++. ..+..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8764 333444445667778889999999999998876 45 46677888899999999999998887765 44555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCChhHHHHHHHHHHhCCCccCCCc
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA--DAGRWEDAFSIRKEMRDCGMKRLPGF 661 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 661 (665)
..-..+...-....-.+.|...+.+-+...|+--..+..+.--+. .-|...+-+-.++.|....++..|.|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555555555444455677777777777777776554433332232 23457777788888887777766654
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=8.9e-07 Score=90.49 Aligned_cols=415 Identities=12% Similarity=0.127 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHH-----HHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPS-KDVVSWG-----TMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISAC 297 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (665)
+..+...|.+.|-.+.|++.+..+.+ ....... -.+-.|...-.++.+.+.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677778899999999988877654 1111111 12234445567889999999999988888888777777666
Q ss_pred hcccchhhHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch-------------
Q 043580 298 GRAMAFGEGLQIHSIIVK-----------AGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI------------- 353 (665)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------- 353 (665)
...=..+...++|+.... .++..|+.+....+.+.++.|++.+.+++.+..---|+
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 665555555666655443 14567888888999999999999998888753221111
Q ss_pred -----------hhHHHHHHHHHhcCCHHHHHHHHhhcCCC----------------------------CcchHHHHHHHH
Q 043580 354 -----------ASWNALIAGFIRNGMIEDARQLFNNMQKR----------------------------DVYSWSAMISGY 394 (665)
Q Consensus 354 -----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~l~~~~ 394 (665)
..+..=+-.|.-.++..+-.++|-+-..| .......+..-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 11111111222223333333333222211 111222223333
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHH----------HHHHHHHHHHc-----------C----
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKE----------GRWAHEYVLNN-----------S---- 449 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~-----------~---- 449 (665)
-+.++..--+.+++.....| .-+..+++.+...|...++-.+ ...+-+...+. |
T Consensus 849 EkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 34445555555666666666 3467777777777765543221 11111111111 1
Q ss_pred ----CCCChhHHHHHHHHHHhcCCHHHH-----------HHHHHHchhC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 043580 450 ----ITLNDNLSAAIIDMYAKCGSINTA-----------FEVFYHIRDR----TTSVSPWNAIICGLAMHGDANLTLKIY 510 (665)
Q Consensus 450 ----~~~~~~~~~~l~~~~~~~~~~~~A-----------~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 510 (665)
+......|....+.+.+..+.+-= ..+++...+. ..|+.....-+.++...+-+.+.++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 111112333333333333333221 1233333332 455666677777777777788888888
Q ss_pred HHHHHcCCCC--ChHHHHHHHHHhc---------------------------ccChHHHHHHHHHHhHhhcCCCCChhHH
Q 043580 511 SDLEKRNIKL--NSITFIGVLSTCC---------------------------HAGLVDLGERYFKSMKSVYNVEPDLKHY 561 (665)
Q Consensus 511 ~~~~~~~~~p--~~~~~~~l~~~~~---------------------------~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 561 (665)
+++.-.+-.. +...-+.++-... ..+-+++|..+|++. ..+....
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf------~~n~~A~ 1081 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF------DMNVSAI 1081 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh------cccHHHH
Confidence 7776432111 1112222222222 233344444444432 2233333
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+.|++ .-+..+.|.++-++. ..+..|..+..+-...|.+.+|++-|-++ ++|..|.-.+.+..+.|+|+
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHH
Confidence 33333 334455555555444 35677888888888888888888877644 67777888888888888888
Q ss_pred HHHHHHHHHHhCCCc
Q 043580 642 DAFSIRKEMRDCGMK 656 (665)
Q Consensus 642 ~A~~~~~~~~~~~~~ 656 (665)
+-.+++..++.+.-+
T Consensus 1151 dLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVRE 1165 (1666)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888888888776443
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.9e-08 Score=92.21 Aligned_cols=277 Identities=9% Similarity=-0.023 Sum_probs=203.8
Q ss_pred ccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHH---HHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH
Q 043580 348 GIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSA---MISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424 (665)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (665)
..+-|......+.+.+...|+.++|+..|++...-|+.+... ..-.+.+.|+.+....+...+.... .-+...+..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 456677788889999999999999999999877655543322 2334467788888877777776532 112222222
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCCh
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDA 503 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 503 (665)
-........+++.|..+-++.++.+ +.+...+-.-..++...|+.+.|.-.|+..... +.+..+|..|+..|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 2334455677888888877777654 223344444556778889999999999888877 45678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHH-HHhc-ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHH
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVL-STCC-HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 580 (665)
.+|...-....+. ++.+..++..+. ..|. ...--++|.+++++.. .++| -....+.++..+...|+.++++.+
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 9999888776664 345666665552 2332 2334578999999887 5688 477788889999999999999999
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 581 IRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 581 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+++.. .-||...-+.|...+...+.+.+|...|..++.++|++..+..-|
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99876 558888888999999999999999999999999999987765555
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.9e-08 Score=96.68 Aligned_cols=473 Identities=11% Similarity=0.039 Sum_probs=238.5
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHH--h
Q 043580 24 LALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYI--R 101 (665)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~--~ 101 (665)
..+-+=+......|++++|.+....++..+ +.+...+.+=+.++.+.+++++|+.+.+.-........-.+=++|| +
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 344555677888899999999999999888 7778888888899999999999998777655432222222445554 7
Q ss_pred cCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCC-HhhHHHHHHHHhccCChHHHHHHHHH
Q 043580 102 NDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPN-EVTLASVISSSVHLGGIWECRMLHGL 180 (665)
Q Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (665)
.++.++|+..++-..+.+..+-..-.+.+.+.|++++|+++|+.+.+++..-- ...-..++.+-.. ... +.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HH
Confidence 89999999999855555555666667888899999999999999987754311 1111111111100 000 01
Q ss_pred HHHHhcCCchhHHH---HHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCH--HHHHHHHhhCCCCCeeeH
Q 043580 181 VIKLMIDGFVIIST---NLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLV--ELARELFERIPSKDVVSW 255 (665)
Q Consensus 181 ~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~ 255 (665)
+.... .....+|. ...-.+...|++..|+++++....-... .+. .++. |+-.+-+ ...-
T Consensus 164 ~q~v~-~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-------~l~-~~d~~eEeie~el-------~~Ir 227 (652)
T KOG2376|consen 164 LQSVP-EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-------KLE-DEDTNEEEIEEEL-------NPIR 227 (652)
T ss_pred HHhcc-CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-------hhc-ccccchhhHHHHH-------HHHH
Confidence 11111 11122222 2344455667777777776655210000 000 0000 0000000 0122
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHhhcccchhh--HHHHHHHHHHhCCCCchhHHHHHHH
Q 043580 256 GTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLI---SACGRAMAFGE--GLQIHSIIVKAGFDCYDFIQATIIH 330 (665)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (665)
..|..++-..|+.++|..+|...++.. .+|........ -+.....++-. .+..++......
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l------------- 293 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL------------- 293 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh-------------
Confidence 345556667888888888888887763 33432221111 11211111111 111111110000
Q ss_pred HHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC-cchHHHHHHHHHh--CCCchHHHHHH
Q 043580 331 FYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRD-VYSWSAMISGYAQ--NEQPNMALELF 407 (665)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~ 407 (665)
.+.....+...-. ...+..........+..+.+.++........ ...+.+++....+ ...+..+.+++
T Consensus 294 -------~~~~l~~Ls~~qk--~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L 364 (652)
T KOG2376|consen 294 -------AEFLLSKLSKKQK--QAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELL 364 (652)
T ss_pred -------HHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 0000000000000 0001111111112233334444444443322 1222233322221 11244444444
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH--------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 408 HGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE--------YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYH 479 (665)
Q Consensus 408 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 479 (665)
...-+....-........+......|+++.|.+++. .+.+.+.. +.+..++...+.+.++.+.|..++..
T Consensus 365 ~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 365 LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHH
Confidence 444332111112223333444455566666666555 33333333 33445566666666666666666655
Q ss_pred chhC----CCCcch----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHh
Q 043580 480 IRDR----TTSVSP----WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSM 548 (665)
Q Consensus 480 ~~~~----~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 548 (665)
.... .+.... +..+...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-..+
T Consensus 443 Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 443 AIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 5443 222222 3333334456788888999999988865 77888888888888875 356666655444
No 70
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=7.7e-07 Score=90.93 Aligned_cols=577 Identities=12% Similarity=0.106 Sum_probs=305.5
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCC-------------------
Q 043580 26 LVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCST------------------- 86 (665)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------- 86 (665)
|..+|+...+ -.++.+.++...|.+.. |...-++.+...+-.......+.+.+=....
T Consensus 513 ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~ 589 (1666)
T KOG0985|consen 513 YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLV 589 (1666)
T ss_pred HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhc
Confidence 4455565555 45677777777776643 2333445555555555544444443322221
Q ss_pred --C------------CcchhhHHHHHHHhcCChhhHHHhhhcCCCC--Cc-----ccHHHHHHHHhhcCChHHHHHHHHH
Q 043580 87 --L------------DPVACNIMISGYIRNDRLNDAREVFDKTPIK--CC-----VSYTSMIMGFAQNDCWREALEVFRD 145 (665)
Q Consensus 87 --~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~-----~~~~~ll~~~~~~~~~~~a~~~~~~ 145 (665)
| ...-+..+.+.+-+.|-..+|++.+..+..- .+ ..=..+ ..|.-.-.++.+.+.+..
T Consensus 590 ~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclka 668 (1666)
T KOG0985|consen 590 HAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKA 668 (1666)
T ss_pred cchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHH
Confidence 1 0112344556667778888888777665421 11 011112 233334467778888888
Q ss_pred hHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-----------hcCCchhHHHHHHHHHhccCCHHHHHHHHh
Q 043580 146 MRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-----------MIDGFVIISTNLLNMYCVCSSLVEARSLFD 214 (665)
Q Consensus 146 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 214 (665)
|...+++.|..+...+..-|...=..+...++|+..... ++..|+.+.-..|.+-|+.|++.+.+++.+
T Consensus 669 ml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 669 MLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 888877777776666655555544445555555544332 244555666667788888888877777665
Q ss_pred hccC---------------CC---------cccHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------Cee------
Q 043580 215 EMKE---------------RN---------IVSWNVMLNGFAKAGLVELARELFERIPSK-----------DVV------ 253 (665)
Q Consensus 215 ~~~~---------------~~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~------ 253 (665)
+-.- +| ..-+-.=+-.|.-.++..+-++++-+-..| |+.
T Consensus 749 esn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~i 828 (1666)
T KOG0985|consen 749 ESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFI 828 (1666)
T ss_pred ccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHH
Confidence 4431 11 011111112223333333333333222211 111
Q ss_pred -----------eHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCch
Q 043580 254 -----------SWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYD 322 (665)
Q Consensus 254 -----------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 322 (665)
.-.-|..-.-+.++..-....++.....|. -|..+++++...|..+++-.+.. +..++
T Consensus 829 k~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~f----------LkeN~ 897 (1666)
T KOG0985|consen 829 KNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERF----------LKENP 897 (1666)
T ss_pred HHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHh----------cccCC
Confidence 111122222233444444444555555553 35566666666655443322110 00111
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccC--------CchhhHHHHHHHHHhcCCHHHHHHHHhhc-----------C---
Q 043580 323 FIQATIIHFYAACGRINLARLQFELGIK--------DHIASWNALIAGFIRNGMIEDARQLFNNM-----------Q--- 380 (665)
Q Consensus 323 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~--- 380 (665)
..-...+.-||...++-.|.-.+++|.- ..-..|....+.+.+..+.+-=.+++.+- .
T Consensus 898 yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~ta 977 (1666)
T KOG0985|consen 898 YYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTA 977 (1666)
T ss_pred cchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhc
Confidence 1112222233333333222222222211 11122333444444444433322222111 0
Q ss_pred ---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCChhHHHHHHH---------------------------H
Q 043580 381 ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV--KPNEITMVSVFC---------------------------A 428 (665)
Q Consensus 381 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~---------------------------~ 428 (665)
..|+...+.-+.++...+-+.+-+++++++.-.+- .-+...-+.++- .
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~i 1057 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEI 1057 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHH
Confidence 12555555666666666667777777766653221 111111111111 1
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHH
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 508 (665)
+...+-+++|..+|+.. ..+......|++ .-+..+.|.++-++. ..+..|..+..+-.+.|...+|++
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~----n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC----NEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh----CChHHHHHHHHHHHhcCchHHHHH
Confidence 12222233333333332 111111222221 223444444444433 345689999999999999998887
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCC
Q 043580 509 IYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKA 588 (665)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (665)
-|-+ ..|+..|.-++..+.+.|.|++-.+++...+++ .-.|... ..|+.+|++.++..+-++++ ..|
T Consensus 1126 Syik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gp 1192 (1666)
T KOG0985|consen 1126 SYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGP 1192 (1666)
T ss_pred HHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCC
Confidence 6633 346778999999999999999999999988876 5556544 46888999999988765554 568
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+......++.-|...|.++.|.-+|... ..+..|+..+...|++..|...-+++
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888889999999999999998888644 44778888888888888887665554
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=1.9e-10 Score=108.86 Aligned_cols=230 Identities=10% Similarity=-0.023 Sum_probs=131.1
Q ss_pred hCCCchHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 043580 396 QNEQPNMALELFHGMVDAG-VKPN--EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINT 472 (665)
Q Consensus 396 ~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (665)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...+....+.. +.+...++.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777776532 2222 2335555566677777777777777776654 2345667777777777777777
Q ss_pred HHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 473 AFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 473 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
|...|++..+..| +..+|..+..++...|++++|++.+++..+. .|+..........+...++.++|...|++...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 7777777776634 3456666777777777777777777777764 34332111112223345667777777765443
Q ss_pred cCCCCChhHHHHHhhHhhhcCChHHH--HHHHHhCC-CC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-C
Q 043580 552 YNVEPDLKHYGCMVDLLGRAGQLEDA--EEVIRSMP-MK----A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP-S 622 (665)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~-~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~ 622 (665)
...|+...+ .+. +...|+..++ .+.+.+.. .. | ....|..++..+.+.|++++|+..|+++++.+| +
T Consensus 194 -~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 223332221 222 2233444332 22222211 11 1 234677777777777777777777777777775 4
Q ss_pred CCchHHHHHHH
Q 043580 623 HGPSRVLLSNI 633 (665)
Q Consensus 623 ~~~~~~~l~~~ 633 (665)
.....+.+..+
T Consensus 270 ~~e~~~~~~e~ 280 (296)
T PRK11189 270 FVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=2.2e-10 Score=118.73 Aligned_cols=247 Identities=12% Similarity=-0.000 Sum_probs=177.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHc---------cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 043580 398 EQPNMALELFHGMVDAGVKPNE-ITMVSVFCAIAS---------SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC 467 (665)
Q Consensus 398 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (665)
+..++|+.+|++..+. .|+. ..+..+..++.. .+++++|...++++.+.. +.+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467899999999874 5554 345445444432 234788999999888765 33556777788888999
Q ss_pred CCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHH
Q 043580 468 GSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
|++++|...|++.....|+ ...+..+...+...|++++|+..+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999887454 5678888889999999999999999999864 43 333344455566688999999999
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVV-IWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
+++... ..| ++..+..+..+|...|++++|...++++. ..|+.. .++.+...+...| +.|...++++.+..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998753 235 56667788889999999999999998876 335433 3445555567777 4777777777654333
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 623 HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.+.....+..+|.-.|+.+.+.-. +++.+.|
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333333366778888988887766 7776653
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.1e-10 Score=103.08 Aligned_cols=238 Identities=12% Similarity=0.094 Sum_probs=181.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 043580 388 SAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC 467 (665)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (665)
+.+.++|.+.|.+.+|...|+.-.+. .|-+.||..+-.+|.+..++..|..++..-++. ++.+.....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44566666666666666666655553 444455555666666666666666666555543 233333344566677778
Q ss_pred CCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHH
Q 043580 468 GSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
++.++|.++++...+. +.++.+...+...|.-.++++.|+.+++++...| .-++..|+.+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8899999999988876 5567777888888999999999999999999999 5678889999999999999999999999
Q ss_pred HhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 547 SMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 547 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
+..+. --.| -...|-.+.......|++.-|.+.|+-.. .. .....++.|.-.-.+.|+.++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98875 4445 35678888888899999999999999886 33 45788999998899999999999999999999998
Q ss_pred CCchHHHH
Q 043580 623 HGPSRVLL 630 (665)
Q Consensus 623 ~~~~~~~l 630 (665)
-......|
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 76655444
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.30 E-value=1.1e-06 Score=86.79 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=60.8
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHh-ccCCCCCchHHHHH-HHHHhcC-
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAA-SRIHGNVEVGERAAKSLA-GLQPSHGPSRVLLS-NIYADAG- 638 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~-~~~~~~g- 638 (665)
+-++.+...++|++|++.-.+-..+|-..-|..+-.+ +.+.|+..+++.++++-- ..+|.+-.+|..+- ..+.+-|
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt 1376 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGT 1376 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCc
Confidence 3467888999999999998887777877777776655 678999999999998763 45676666554432 2333333
Q ss_pred ChhHHHHHHHH
Q 043580 639 RWEDAFSIRKE 649 (665)
Q Consensus 639 ~~~~A~~~~~~ 649 (665)
+.++|..-+-.
T Consensus 1377 ~~~eay~e~a~ 1387 (1636)
T KOG3616|consen 1377 NCAEAYHEIAD 1387 (1636)
T ss_pred chHHHHHHHHH
Confidence 55655544433
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=8.6e-10 Score=114.37 Aligned_cols=177 Identities=11% Similarity=-0.001 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 400 PNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYH 479 (665)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 479 (665)
+++|...+++..+.. +-+...+..+...+...|++++|...++++.+.+ +.+...+..+..++...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666655532 2233344444455555566666666666665543 22234445555556666666666666666
Q ss_pred chhCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-
Q 043580 480 IRDRTTSVS-PWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP- 556 (665)
Q Consensus 480 ~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p- 556 (665)
.....|+.. .+..++..+...|++++|...++++.... +| +...+..+..++...|+.++|...+.++.. ..|
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~ 473 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEIT 473 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccch
Confidence 555533322 22233333444556666666666555432 23 233344455555556666666666655542 233
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
+....+.+...|...| ++|...++.+
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 2333344444444444 2444444443
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=4.5e-10 Score=110.44 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=157.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc-----C-CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CCC--
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNN-----S-ITLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TTS-- 486 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-- 486 (665)
+...+...|...|+++.|...++...+. | ..|.. ...+.+...|...+++.+|..+|+++... +++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555555555555555555432 1 11222 22234566677777777777777766554 222
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCh-HHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CC
Q 043580 487 --VSPWNAIICGLAMHGDANLTLKIYSDLEKR-----NI-KLNS-ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VE 555 (665)
Q Consensus 487 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 555 (665)
..+++.|..+|.+.|++++|...+++..+- |. .|.. ..++.+...|+..+++++|..++....+.+. +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 224666667777778777777766655431 11 2222 2466677788889999999998887765432 22
Q ss_pred C----ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---
Q 043580 556 P----DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------M--KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAG--- 618 (665)
Q Consensus 556 p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 618 (665)
+ -..+++.|...|...|++++|.++++++. . .+ ....++.+...|.+.++++.|..+|.++..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 25689999999999999999999998875 1 12 245678889999999999999999988854
Q ss_pred -cCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 619 -LQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 619 -~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..|+++.. |..|+.+|..+|++++|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45666544 77899999999999999999988864
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.3e-11 Score=80.92 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhc
Q 043580 118 KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVH 167 (665)
Q Consensus 118 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 167 (665)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999988864
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=1.9e-09 Score=99.68 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCC 533 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 533 (665)
.+..+...+...|++++|.+.+++.... +.+...+..+...+...|++++|.+.+++.......+ ....+..+...+.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 3344455555556666666665555544 2233455555666666667777777666666532222 3345555666677
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
..|++++|...+++..+. .| +...+..++..+...|++++|...+++.. .+.+...+..+...+...|+.+.|.
T Consensus 147 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 777777777777777643 45 45667777777777777777777777654 2234555556666677777877777
Q ss_pred HHHHHHhccCC
Q 043580 611 RAAKSLAGLQP 621 (665)
Q Consensus 611 ~~~~~~~~~~p 621 (665)
.+.+.+.+..|
T Consensus 224 ~~~~~~~~~~~ 234 (234)
T TIGR02521 224 RYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhCc
Confidence 77776655443
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.5e-11 Score=80.60 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=48.0
Q ss_pred CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043580 250 KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGR 299 (665)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (665)
||+.+||++|.+|++.|++++|.++|++|++.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=9.1e-08 Score=95.08 Aligned_cols=430 Identities=12% Similarity=0.049 Sum_probs=257.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCC--ee
Q 043580 179 GLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPSKD--VV 253 (665)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~ 253 (665)
.++....+..|..+|..|.-+....|++..+.+.|++... .....|+.+-..+...|.--.|..+++....+. +.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 3334444678888999999999999999999999998875 345678888888999999999999998765432 32
Q ss_pred eHHHHH---HHHh-hcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHhhc----c-------cchhhHHHHHHH
Q 043580 254 SWGTMI---DGYL-QVERLSEALTMYRAMLCD------GIAPNDVMIVDLISACGR----A-------MAFGEGLQIHSI 312 (665)
Q Consensus 254 ~~~~l~---~~~~-~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~----~-------~~~~~a~~~~~~ 312 (665)
....++ ..|. +-+..++++++-.+.... .+.|-. |..+--+|.. . ....++.+.++.
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~--~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG--YLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH--HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 222222 2233 345566666665555441 133333 3333323221 1 123455666666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc----cCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ccc
Q 043580 313 IVKAGFDCYDFIQATIIHFYAACGRINLARLQFELG----IKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR---DVY 385 (665)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 385 (665)
.++.+ +.|+.+...+.--|.-.++.+.|....++. ...+...|..|.-.+...+++.+|+.+.+..... |-.
T Consensus 470 av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 66655 334455555556666777777776666543 3445667777777777777777777777655432 111
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH--cCCCCChhHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN--NSITLNDNLSAAIIDM 463 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 463 (665)
....-+..-..-++.++++.....+..- --+.... ...++-....+....+.- ....-.+.++..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111111122235555555555444321 0000000 000000011111111100 0001111222222211
Q ss_pred HHhcC---CHHHHHHHHHHchhCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 464 YAKCG---SINTAFEVFYHIRDRTTSV------SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 464 ~~~~~---~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
....+ ..+.....+.... .|+. ..|......+.+.+..++|...+.+..... +-....|......+..
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHhhhhhcccccccCcccccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 11111 1111100000000 1221 235566677888899999998888877642 4456677777778888
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHH--HHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEE--VIRSMP-MKA-DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 609 (665)
.|...+|.+.|.... .+.| ++.+..+++.++.+.|+..-|.. ++..+. ..| +...|..++..+.+.|+.++|
T Consensus 697 ~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 999999999999988 6799 68899999999999998888877 887775 444 789999999999999999999
Q ss_pred HHHHHHHhccCCCCCch
Q 043580 610 ERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~ 626 (665)
.+.|.-+.++++.+|.-
T Consensus 774 aecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 774 AECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHhhccCCCcc
Confidence 99999999999988753
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.9e-08 Score=88.27 Aligned_cols=268 Identities=7% Similarity=-0.022 Sum_probs=200.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHH-HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 043580 382 RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMV-SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAI 460 (665)
Q Consensus 382 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 460 (665)
.|+.....+.+++...|+.+.|+..|++... +.|...+-. ...-.+.+.|+++....+...+.... +.....+-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3788899999999999999999999999876 345443321 12233456778888777777765432 1122222233
Q ss_pred HHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH
Q 043580 461 IDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 539 (665)
.......++++.|..+-++.+.. +.+...+-.-...+...|++++|.-.|+..+... +-+...|..++.+|...|...
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 34455678899999999888875 3445555555577888999999999999988752 347789999999999999999
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHh-hHhh-hcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 540 LGERYFKSMKSVYNVEPDLKHYGCMV-DLLG-RAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
+|.-+-....+. +.-+..+...+. ..+. ...--++|.+++++.. .+|+ ....+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999888877753 222666666553 3332 3345688999998875 5665 45667777889999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
.+...|+... +..||+++...+.+++|.+.|..++..+.+
T Consensus 464 ~L~~~~D~~L-H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 464 HLIIFPDVNL-HNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhccccHH-HHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 9999998766 899999999999999999999999887654
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.20 E-value=2e-07 Score=91.87 Aligned_cols=46 Identities=7% Similarity=0.148 Sum_probs=28.9
Q ss_pred HhhcCChHHHHHHHHHhHHcCCCCCHh-hHHHHHHHHhccCChHHHHHHH
Q 043580 130 FAQNDCWREALEVFRDMRILGVIPNEV-TLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 130 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~ 178 (665)
....|+++.|..+++... ..|+.. .|..+.......|++-.|...|
T Consensus 454 aid~~df~ra~afles~~---~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLE---MGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred ccccCchHHHHHHHHhhc---cCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 345788999988887654 356655 4555555555666655555444
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.2e-06 Score=85.85 Aligned_cols=400 Identities=10% Similarity=0.043 Sum_probs=204.2
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCC-----------CCcchhhHHHHHH
Q 043580 31 RYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCST-----------LDPVACNIMISGY 99 (665)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~ll~~~ 99 (665)
..+..-|+.+.|.+-.+.+... .+|..+..+|.+..+++-|.-.+..|.. .|+.--.+-+.++
T Consensus 736 SfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 3455567777777655554433 4788888888888888888877777653 1222222222233
Q ss_pred -HhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHH
Q 043580 100 -IRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 100 -~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 178 (665)
..-|.+++|+.++.+.++ |..|=..|-..|.+++|.++-+.=-+..+ ..||.....-+...+|.+.|.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 466888888888877654 44555666777888888887765433222 245666666666777888887777
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Q 043580 179 GLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTM 258 (665)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 258 (665)
+..-...++ ...++. .++....++.+.+.+ ...|......+-..|+++.|+.+++. ...|-++
T Consensus 882 EK~~~hafe-----v~rmL~-----e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~-----A~D~fs~ 944 (1416)
T KOG3617|consen 882 EKAGVHAFE-----VFRMLK-----EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSS-----AKDYFSM 944 (1416)
T ss_pred HhcCChHHH-----HHHHHH-----hChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHH-----hhhhhhh
Confidence 654222111 000111 112222233333332 23444444444556777777777665 3345555
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhC----CCCchhHHHHHHHHHHh
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAG----FDCYDFIQATIIHFYAA 334 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 334 (665)
++..+-.|+.++|-++-++- -|....-.+.+.|-..|++.+|..+|....... +-.....-..+......
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 56666666666666655442 233444455566666666666666555443210 00000111112222222
Q ss_pred cCCh--HHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--------------CCcchHHHHHHHHHhCC
Q 043580 335 CGRI--NLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--------------RDVYSWSAMISGYAQNE 398 (665)
Q Consensus 335 ~g~~--~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~l~~~~~~~~ 398 (665)
.|.- -.|-++|+..- ......+..|-+.|.+.+|+++-=.-.+ .|+...+.-...++...
T Consensus 1019 s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred cCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2211 12222222100 0112233445566666666554322211 25556666667777777
Q ss_pred CchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCCh----hHHHHHHHHHHhcCCHHHH
Q 043580 399 QPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN-NSITLND----NLSAAIIDMYAKCGSINTA 473 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~~~~~~A 473 (665)
++++|..++-...+ |...+..| ...+..-..++-+.|.- ..-.|+. .+...+.+.+.++|.+..|
T Consensus 1095 qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 77777777655443 22222222 22222233333333321 1112222 3455666777777877777
Q ss_pred HHHHHHch
Q 043580 474 FEVFYHIR 481 (665)
Q Consensus 474 ~~~~~~~~ 481 (665)
-+-|...-
T Consensus 1165 tKKfTQAG 1172 (1416)
T KOG3617|consen 1165 TKKFTQAG 1172 (1416)
T ss_pred HHHHhhhh
Confidence 76665443
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=1.3e-07 Score=94.69 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=44.4
Q ss_pred HHHhcCC-HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 599 ASRIHGN-VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 599 ~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
-+.+..+ .++|.++++-+.+..|++..++..--.+|.+.|++--|++.+.+
T Consensus 465 kL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 465 KLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3445555 69999999999999999999999999999999999999988765
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=3.8e-06 Score=82.24 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=82.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
++-.++..+.+.|+++.|..+++... +..|+ ++.|..-++++...|++++|..++++.. ..||...-...+.-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34456667778888888888888887 55774 6667777788888888888888888876 334544444555556
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCc-------hHHH--HHHHHHhcCChhHHHHHHHHH
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGP-------SRVL--LSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~--l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.+.++.++|..++-+-....-+... .|+. =|.+|.++|++.+|++-+..+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 6778888888877766543321111 1222 355678888887777655443
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.7e-08 Score=93.84 Aligned_cols=98 Identities=20% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-eeeHHHHHHHHhhcCChhHH
Q 043580 198 NMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS--KD-VVSWGTMIDGYLQVERLSEA 271 (665)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 271 (665)
.+.+..|+++.|...|.+... +|.+.|..-..+|+..|++++|++--.+..+ |+ ...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 456678888888888877664 5666777778888888888888776655543 43 34677788888888888888
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 043580 272 LTMYRAMLCDGIAP-NDVMIVDLISAC 297 (665)
Q Consensus 272 ~~~~~~m~~~g~~p-~~~~~~~ll~~~ 297 (665)
+.-|.+-++. .| +...+..+..+.
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 8888887763 34 344444454444
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=4.5e-07 Score=92.65 Aligned_cols=575 Identities=13% Similarity=0.033 Sum_probs=287.6
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhcCChhhHHHhhhcCCCCCc-----ccHHHHHHH
Q 043580 58 TFIQNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRNDRLNDAREVFDKTPIKCC-----VSYTSMIMG 129 (665)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ll~~ 129 (665)
...|..|...|...-+...|.+.|++..+.| ...+......|++..+++.|..+.-...+... ..|....-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3478888888888888888999998887754 45677788889999999999888543333221 223334445
Q ss_pred HhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHH
Q 043580 130 FAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEA 209 (665)
Q Consensus 130 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 209 (665)
|.+.+++.+|+.-|+...+..++ |...|..+..+|...|....|.++|.......+. +....--.....+..|++.+|
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHH
Confidence 67788888888888888876433 6668888888999999988888888877665432 222222234456677888888
Q ss_pred HHHHhhccC---------CC-cccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH-HHHHHhhcC-C---hhHHHHH
Q 043580 210 RSLFDEMKE---------RN-IVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGT-MIDGYLQVE-R---LSEALTM 274 (665)
Q Consensus 210 ~~~~~~~~~---------~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-l~~~~~~~~-~---~~~a~~~ 274 (665)
...+..+.. .+ ..++-.+...+.-.|-...|...+++-.+ .+.. +....+... . ...|..+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie----~f~~~l~h~~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE----SFIVSLIHSLQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHhhhhhHHHHHHHhHHHHH
Confidence 888777663 11 11222222333333333333333333211 1111 111100000 0 0122222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcccch---h---hHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC----ChHH
Q 043580 275 YRAMLCDGIAPNDVMIVDLISACGRAMAF---G---EGLQIHSIIVKAGFDCYDFIQATIIHFYAA----CG----RINL 340 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~ 340 (665)
|-... .. .|+.+....+....-+.+.. + .+.+.+-.-. .+..+...+..+...|.+ .| +...
T Consensus 726 f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 726 FSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 32222 11 33333333333322222222 1 0111110000 111122233333332222 22 1234
Q ss_pred HHHHHHhccC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 043580 341 ARLQFELGIK---DHIASWNALIAGFIRNGMIEDARQLFNNMQ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG 414 (665)
Q Consensus 341 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 414 (665)
|...+++.++ .+..+|+.|.-. ..-|++.-|.-.|-.-. .....+|..+.-.+.+..+++.|...|...+..
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL- 879 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL- 879 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc-
Confidence 5555655543 334455554433 44466666666654432 225567777777777888888888888877663
Q ss_pred CCC-ChhHHHHHHHHHHccCcHHHHHHHHHHHH--H--cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch--------
Q 043580 415 VKP-NEITMVSVFCAIASSGTLKEGRWAHEYVL--N--NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR-------- 481 (665)
Q Consensus 415 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------- 481 (665)
.| +...+..........|+.-+...++..-. . .|-.++...+-+.......+|+.++-+...+.+.
T Consensus 880 -dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 -DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred -CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 33 33334333333344565666666665522 1 2223333333333334445555544333332222
Q ss_pred --hC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHH----HHHhcccChHHHHHHHHHHhHhhcC
Q 043580 482 --DR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKR-NIKLNSITFIGV----LSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 482 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
.. +.+...|.......-+.+.+..|.+...+.+.. ..+-+..+|+.+ ...++..|.++.|...+...-.
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~--- 1035 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM--- 1035 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---
Confidence 11 233445555555555556666666655554321 013344444432 2233334444443333222110
Q ss_pred CCCChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 554 VEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
..+..+...-+. ..-.++++++.+.|+++. ...+ ......++.+....+..+.|...+-+...+.|.+.....
T Consensus 1036 -evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll 1113 (1238)
T KOG1127|consen 1036 -EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLL 1113 (1238)
T ss_pred -hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHH
Confidence 111111111111 133466666666666654 1122 233344455555666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 043580 629 LLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.|+-++.-..+-..-....+++
T Consensus 1114 ~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred HHHHHHHHhhhhhhhHHHHHHH
Confidence 6655555444444444444444
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=3.2e-08 Score=93.75 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHHcC-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNS-ITLN--DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
..+.+...+..++... ..|+ ...+..+...|...|+.+.|...|++.... +.+...|+.+...+...|+++.|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666665422 2222 355777888899999999999999998887 44567899999999999999999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCC
Q 043580 510 YSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD 589 (665)
Q Consensus 510 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (665)
+++..+.. +-+...+..+..++...|++++|.+.|++..+ ..|+..........+...++.++|...+++....-+
T Consensus 121 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99999853 33566788888888999999999999999985 477433222222334567789999999976542212
Q ss_pred HHHHHHHHHHHHhcCCHHHH--HHHHHHH----hccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 590 VVIWGTLLAASRIHGNVEVG--ERAAKSL----AGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A--~~~~~~~----~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+..|.. .......|+...+ ...+.+. .++.|+....|..||.++...|++++|+..|+++++.++
T Consensus 197 ~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222321 2233345554333 3222222 355666778899999999999999999999999988764
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=2.1e-08 Score=84.90 Aligned_cols=191 Identities=12% Similarity=0.004 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL 537 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 537 (665)
.|.-.|...|++..|..-+++..+..| +..+|..+...|.+.|+.+.|.+-|++..... +.+....|....-+|..|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 355556666666666666666666533 34466666666666666666666666666643 3355566666666666666
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 538 VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 538 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
+++|...|++........--..+|..+..|..+.|+.+.|...+++.. ..| .+.....+.....+.|++-.|..++++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 666666666666542211135566666666666666666666666654 222 345555666666666666666666666
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
...-.+-....+...+.+-...|+.+.|.++=..+
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66555544454555555566666666665554444
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=3.5e-07 Score=82.01 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHH---HHHHhcCCHHHHHHHHhhcCCCCcchHHHHH---HHHHhCC
Q 043580 325 QATIIHFYAACGRINLARLQFELGIKDHIASWNALI---AGFIRNGMIEDARQLFNNMQKRDVYSWSAMI---SGYAQNE 398 (665)
Q Consensus 325 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~ 398 (665)
.-.+...+...|++.+|...|...+..|+..|.++. ..|...|+...|+.-+....+..+..+.+-+ ..+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 345666777778888888888877777777776654 3577777777777777776655444444333 4566778
Q ss_pred CchHHHHHHHHHHHCCCCCCh--h------------HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 043580 399 QPNMALELFHGMVDAGVKPNE--I------------TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMY 464 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~--~------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (665)
.++.|..-|+...+....-+. . .....+..+.-.|+...++.....+++.. +-+...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 888888888877775321111 0 01122223333444444444444444432 22334444444455
Q ss_pred HhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 465 AKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
...|++..|+.-++...+. ..++..+..+...+...|+.+.++...++.++
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555554444443333 23333444444444555555555555554444
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.8e-09 Score=101.27 Aligned_cols=198 Identities=15% Similarity=0.081 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CChHHH
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK--------LNSITF 525 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------p~~~~~ 525 (665)
..+..|...-...++-..|+..+.+..+. +.+......|...|...|.-..|+..++..+....+ ++...-
T Consensus 320 eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 320 EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE 399 (579)
T ss_pred HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence 34444555555555555666666666665 334556666667777777777777777776554210 000000
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIH 603 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 603 (665)
.. ..+..........++|-.+....+..+|+.+...|.-.|.-.|++++|+..|+.+. .+| |...||.|+..+...
T Consensus 400 ~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 400 NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 00 22333334455566666665543555788999999999999999999999999986 566 678899999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.+.++|+..|++++++.|.....++.||-.|...|.|+||.+.|-+++...
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999987743
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=1.7e-07 Score=93.84 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=89.5
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
++..+...|...|++++|+++.++.++ ..| .+..|..-+++|-+.|++++|.+.++.+. ..-|...-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 345556677788888888888888874 477 47788888888888888888888888876 223555555566667
Q ss_pred HhcCCHHHHHHHHHHHhccCC--CCCc-----hH--HHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 601 RIHGNVEVGERAAKSLAGLQP--SHGP-----SR--VLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p--~~~~-----~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+.|++++|...+......+- .... .| .-.|.+|.+.|++..|++.|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788888888888877755442 2211 12 3467778889999999888776643
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.8e-07 Score=87.11 Aligned_cols=438 Identities=13% Similarity=0.027 Sum_probs=230.1
Q ss_pred HHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC--CCc-ccHHHHHHHHHhcCCHHH
Q 043580 163 SSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--RNI-VSWNVMLNGFAKAGLVEL 239 (665)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~ 239 (665)
++....|+++.|...|...+...+. +...|+.-..+|...|++++|++=-....+ |+. ..|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 5567889999999999999888755 888999999999999999998876666554 443 478888888999999999
Q ss_pred HHHHHhhCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HhhcccchhhHHHHHH
Q 043580 240 ARELFERIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLIS-----ACGRAMAFGEGLQIHS 311 (665)
Q Consensus 240 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~ 311 (665)
|+..|.+-.+. |...++-+..++ ..+.+. |.. .-++..+..+.. .+.....+ ..++.
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~---~~~l~ 153 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAY---VKILE 153 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHH---HHHHH
Confidence 99999988763 344555565555 111111 111 111112211111 11111111 11111
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH---------hcc-------CCchhhHHHHHHHHHhcCC-HHHHHH
Q 043580 312 IIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE---------LGI-------KDHIASWNALIAGFIRNGM-IEDARQ 374 (665)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---------~~~-------~~~~~~~~~l~~~~~~~~~-~~~a~~ 374 (665)
.+. .+ |+. +..|.+-.++..+.-.+. .+. .|.. ......-..++ .++..
T Consensus 154 ~~~-~~--p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~- 219 (539)
T KOG0548|consen 154 IIQ-KN--PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERR- 219 (539)
T ss_pred Hhh-cC--cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchhHHHHH-
Confidence 111 11 100 111111111111111110 000 0000 00000000000 00000
Q ss_pred HHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-
Q 043580 375 LFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLN- 453 (665)
Q Consensus 375 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 453 (665)
...-......+..+..+..+++.|++-+....+.. -+..-++....++...|.+......-....+.|...-
T Consensus 220 -----~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra 292 (539)
T KOG0548|consen 220 -----VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA 292 (539)
T ss_pred -----HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH
Confidence 00011133445566666667777777777666643 2333334444555666665555544444433331100
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHH
Q 043580 454 -----DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS-ITFIG 527 (665)
Q Consensus 454 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ 527 (665)
...+..+..+|.+.++++.|...|.+......++ ....+....++++...+...-. .|.. .-...
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~ 363 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAYI--NPEKAEEERE 363 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHH
Confidence 0111223345666677777777777655431111 1122223344444444433332 2322 11222
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g 604 (665)
-...+.+.|++..|+..|.+++.. .| |...|....-+|.+.|.+..|+.-.+... ..| ....|..=+.++....
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 255667778888888888887754 57 77788888888888888888887766664 233 3444555555666677
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
++++|.+.|+++++.+|++..+...+..++..........++.++
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 788888888888888888877777776666654333334444433
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=1.1e-06 Score=77.34 Aligned_cols=409 Identities=11% Similarity=0.069 Sum_probs=220.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHhh
Q 043580 223 SWNVMLNGFAKAGLVELARELFERIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDL-ISACG 298 (665)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 298 (665)
-+++.+..+.+..++++|++++....+. +....+.|..+|....++..|-..|+++-. ..|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3667777788888999999988776653 456677888888888999999999998876 45665555432 34556
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHH----HHHhcCChHHHHHHHHhcc-CCchhhHHHHHHHHHhcCCHHHHH
Q 043580 299 RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIH----FYAACGRINLARLQFELGI-KDHIASWNALIAGFIRNGMIEDAR 373 (665)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 373 (665)
+.+.+..|+++...|... ....+..+. .....+++..+..+.++.. +.+..+.+...-...+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 777788888887776542 112221111 1223344444444444333 233333333334444555555555
Q ss_pred HHHhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH----HHHHHHHHccCcHHHHHHHHHHH
Q 043580 374 QLFNNMQKR----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM----VSVFCAIASSGTLKEGRWAHEYV 445 (665)
Q Consensus 374 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~ 445 (665)
+-|+...+- ....|+..+.. .+.++++.|++...++.++|++-.+..= +-.+.+- ..|+. ..+...
T Consensus 165 qkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~S- 238 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQS- 238 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHH-
Confidence 555544332 22334433332 2345555555555555555543211100 0000000 00000 000000
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 446 LNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.-...++.-...+.+.|+++.|.+.+..|..+ ..|+.+...+.-. -..+++....+-+.-+...+ +-..
T Consensus 239 ------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 239 ------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred ------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCCh
Confidence 00112333344567889999999999998876 4566665554322 23455666666666666653 3456
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG-RAGQLEDAEEVIRSMPMKADVVIWGTLLAAS 600 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 600 (665)
.||..++-.||+..-++.|-.++-+-... ...- +...|+.| +++. ..-..++|.+-++.+...-....-...+..-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999888888877664332 1111 44444433 3333 3346667766655543110000000111111
Q ss_pred -HhcCCH----HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 043580 601 -RIHGNV----EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKR 657 (665)
Q Consensus 601 -~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 657 (665)
.+..+- -.|++-|++.+++. .+.....+++|+...++..+.+.|+.-.+-..+.
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 111111 12223333333321 2346678899999999999999998876644433
No 95
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=7.8e-08 Score=94.94 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhc-----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--------CCC
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVY-----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--------MKA 588 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~ 588 (665)
.+++.+...|.+.|++++|.++++++.+.. +..+ ....++.|...|.+.+++.+|.++|.+.. ..|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 467777777777777777777777766531 2233 34556777888888888888888877754 223
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 589 D-VVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 589 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
+ ..+|..|...|...|++|.|+++.+++.
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 4678888888999999999999888885
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.5e-06 Score=85.45 Aligned_cols=390 Identities=12% Similarity=0.074 Sum_probs=215.8
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHh-C--------CCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchh
Q 043580 22 YELALVSALRYCSAHIAVSQGQQIHSLIFKS-G--------LESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVAC 92 (665)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 92 (665)
+...|..+.+.|.+.++++.|.-++..|... | -.|+ .+-......-...|.+++|+.+|.+....
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 3467888899999999999988888877642 1 1232 22223333444679999999999988663
Q ss_pred hHHHHHHHhcCChhhHHHhhhcCCCCC-cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCCh
Q 043580 93 NIMISGYIRNDRLNDAREVFDKTPIKC-CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGI 171 (665)
Q Consensus 93 ~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 171 (665)
..|=+.|...|+|++|.++-+.-.+-. ..||..-...+-..++.+.|++.|+..... --..+..|. .++
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p 899 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYP 899 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hCh
Confidence 345566778999999999876543322 246777777777788888888888764211 111111111 111
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 043580 172 WECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKD 251 (665)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (665)
...+.+.+.+. |...|.=-...+-..|+.+.|+.++.... .|-++++..|-.|+.++|-.+-++- .|
T Consensus 900 ~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd 966 (1416)
T KOG3617|consen 900 KQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GD 966 (1416)
T ss_pred HHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--cc
Confidence 11122211111 11222212223334677777777776543 3555666666777777777766543 34
Q ss_pred eeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc---------------chhhHHHHHHHHHHh
Q 043580 252 VVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM---------------AFGEGLQIHSIIVKA 316 (665)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~ 316 (665)
....-.|.+.|-..|++.+|..+|.+.+. |...|+.|-..+ +.-.|-+.|++.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--- 1034 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--- 1034 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---
Confidence 45555677777777888888777766532 333333332221 222222333221
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHH------------Hhcc--CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 043580 317 GFDCYDFIQATIIHFYAACGRINLARLQF------------ELGI--KDHIASWNALIAGFIRNGMIEDARQLFNNMQKR 382 (665)
Q Consensus 317 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 382 (665)
| ......+..|-+.|.+.+|.++- .+.+ ..|+...+.-.+.+....++++|..++-...+
T Consensus 1035 g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~- 1108 (1416)
T KOG3617|consen 1035 G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE- 1108 (1416)
T ss_pred c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 1 11233455677777776665443 1222 23556666667777778888888777765432
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHH-CCCCCChh----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVD-AGVKPNEI----TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLS 457 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 457 (665)
|...+. +|+..+..-..++-+.|.- +.-.|+.. .+..+...|.++|.+..|.+-|...-+.
T Consensus 1109 ----~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--------- 1174 (1416)
T KOG3617|consen 1109 ----FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--------- 1174 (1416)
T ss_pred ----HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------
Confidence 222222 2233333333333333321 11234433 3445567788888888777666544221
Q ss_pred HHHHHHHHhcCCHHH
Q 043580 458 AAIIDMYAKCGSINT 472 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~ 472 (665)
-..++++.+.|+.++
T Consensus 1175 l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1175 LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHhcCCcce
Confidence 124555666666554
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=4.8e-07 Score=79.52 Aligned_cols=306 Identities=12% Similarity=0.061 Sum_probs=179.0
Q ss_pred hhHHHHHHHhcCChhhHHHhhhcCCCC---CcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhcc
Q 043580 92 CNIMISGYIRNDRLNDAREVFDKTPIK---CCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHL 168 (665)
Q Consensus 92 ~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 168 (665)
+.+.+..+.+..++++|++++....+. +....+.|..+|....++..|-+.++.+-.. .|...-|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY------- 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY------- 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH-------
Confidence 445555555555666655555543322 2334445555555555555555555555443 2333322210
Q ss_pred CChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCC-CcccHHHHHHH--HHhcCCHHHHHHHHh
Q 043580 169 GGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKER-NIVSWNVMLNG--FAKAGLVELARELFE 245 (665)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ll~~--~~~~~~~~~a~~~~~ 245 (665)
-...+.+.+.+.+|+++...|.+. +...-..-+.+ ....+++-.+..+++
T Consensus 84 ---------------------------~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 84 ---------------------------QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred ---------------------------HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 133445666777777777777763 22222222222 234677888888888
Q ss_pred hCCC-CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhH
Q 043580 246 RIPS-KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFI 324 (665)
Q Consensus 246 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 324 (665)
+.+. .+..+.+.......+.|+++.|++-|+...+-|--.....|+..+.. .+.++.+.|++...+++++|+...+..
T Consensus 137 Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 137 QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 8874 55666666666677899999999999988876433345667666544 466889999999999999886543322
Q ss_pred HH----HHHHHHHhcCCh-HHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHH
Q 043580 325 QA----TIIHFYAACGRI-NLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR-----DVYSWSAMISGY 394 (665)
Q Consensus 325 ~~----~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~ 394 (665)
-- ..+++-+ -|+. ..+. ..-+..+|.-...+.+.|+++.|.+.+..|+.+ |+++...+.-.-
T Consensus 216 gIGm~tegiDvrs-vgNt~~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n 287 (459)
T KOG4340|consen 216 GIGMTTEGIDVRS-VGNTLVLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN 287 (459)
T ss_pred CccceeccCchhc-ccchHHHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc
Confidence 10 0000000 0000 0000 000123444445567889999999999999854 777776654332
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHH
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEY 444 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 444 (665)
..+++....+-+.-+...+. -...||..++-.||+..-++.|..++.+
T Consensus 288 -~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 288 -MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred -ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 23456555555555665533 3346888888888888888888777655
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=5.4e-09 Score=97.21 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=65.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCCh
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQL 574 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 574 (665)
..|+++.|++++++. .+.......+..|.+.++++.|.+.++.|. .+..|. +...++.++.. .+++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcH-HHHHHHHHHHHHHhCchhH
Confidence 345555555544321 233444444555555555555555555554 223332 12222222221 2245
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 043580 575 EDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW-EDAFSIRKEMR 651 (665)
Q Consensus 575 ~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 651 (665)
.+|..+|+++..+ +++.+++.+..++...|++++|...++++++.+|+++.+...++-+....|+. +.+.+++.++.
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5555555555322 44455555555555555555555555555555555555555555555555554 33444444443
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=8.5e-07 Score=79.63 Aligned_cols=314 Identities=10% Similarity=0.001 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHH---HHH
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNAL---IAG 362 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~ 362 (665)
+..-..-+-..+...|++..|+.-|...++.+. .+-..+..-...|...|+...|..-+.+.++..+..+.+- ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 334444555666667777777777776665421 1112222334456666766666655555443222222222 345
Q ss_pred HHhcCCHHHHHHHHhhcCCCCcc------------------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH
Q 043580 363 FIRNGMIEDARQLFNNMQKRDVY------------------SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (665)
+.+.|.+++|+.-|+.+.+.++. .....+..+...|+...|++....+.+.. +.+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 77888888888888777644221 12233445556778888888888877742 334555556
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChH
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDAN 504 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 504 (665)
-..+|...|.+..|+.-++..-+..-.. ...+..+-..+...|+.+.++..+.+..+..|+-...... | +...
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~---Y---Kklk 267 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF---Y---KKLK 267 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH---H---HHHH
Confidence 6677777888877776666655443222 2334445666777777777777777776654443321111 1 1112
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHhhhcCChHHHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLLGRAGQLEDAEE 579 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~ 579 (665)
+..+.++.|.+ ....++|.++.+..+.+.+. .|. ...+..+-.++...|++.+|++
T Consensus 268 Kv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 268 KVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHH
Confidence 22222222221 22334555555555555432 332 2223345555666677777777
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 580 VIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 580 ~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
...+.. ..| |..++..-..+|.-..+++.|+.-|+++.+.+|++..+.
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 766654 334 366666666666666677777777777777777665543
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.98 E-value=2.8e-08 Score=87.20 Aligned_cols=147 Identities=8% Similarity=0.075 Sum_probs=108.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 573 (665)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..| |...|..+...|...|+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCC
Confidence 456677777665444322211 11 012235666777777777764 367 78888888888889999
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 574 LEDAEEVIRSMP-MKA-DVVIWGTLLAAS-RIHGN--VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 574 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
+++|...+++.. ..| +...+..+..++ ...|+ .++|..+++++++.+|+++..+..|+..+.+.|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888875 334 677777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCCc
Q 043580 649 EMRDCGMK 656 (665)
Q Consensus 649 ~~~~~~~~ 656 (665)
++++....
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 98886543
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=1e-06 Score=87.11 Aligned_cols=259 Identities=11% Similarity=-0.007 Sum_probs=159.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChh-HHHHHHHHHH----ccCcHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHH
Q 043580 391 ISGYAQNEQPNMALELFHGMVDAGVKPNEI-TMVSVFCAIA----SSGTLKEGRWAHEYVLNNSITLND-NLSAAIIDMY 464 (665)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 464 (665)
...+...|++++|.+.+++..+. .|+.. .+.. ...+. ..+..+.+.+.+.. .....|+. .....+...+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHH
Confidence 33456678888888888887775 34332 3221 11222 23444444444433 11222332 3444566788
Q ss_pred HhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--HHHHHHHHHhcccChHHH
Q 043580 465 AKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-KLNS--ITFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~ 540 (665)
...|++++|...+++.....| +...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 889999999999999888744 456778888889999999999999998887532 1222 245567788889999999
Q ss_pred HHHHHHHhHhhcCCCCChhHH-H--HHhhHhhhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 541 GERYFKSMKSVYNVEPDLKHY-G--CMVDLLGRAGQLEDAEEV---IRS---M-PMKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
|..++++........+..... + .+...+...|....+... ... . ..............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 999999986331111111111 1 223333344433333322 111 1 11111222235666778899999999
Q ss_pred HHHHHHhccCCC---------CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 611 RAAKSLAGLQPS---------HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 611 ~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..++.+....-. ........+.++...|++++|.+.+.+++..+
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999888543211 23445677788999999999999999988753
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=5.6e-06 Score=85.00 Aligned_cols=467 Identities=13% Similarity=0.062 Sum_probs=235.8
Q ss_pred hHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhh
Q 043580 136 WREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDE 215 (665)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 215 (665)
...|+..|-+..+..+. =...|..|...|+...|...|.+.|+...+.. ..+........+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555555554443221 12356666666666556666777776665554 33445556677777777777777776444
Q ss_pred ccCCCc-----ccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCH
Q 043580 216 MKERNI-----VSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPND 287 (665)
Q Consensus 216 ~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 287 (665)
..+.+. ..|....-.|.+.++...|+.-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 433221 1222233345566777777777766654 2455666777777777777777777776654 44543
Q ss_pred HHHHHHHHH--hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHh
Q 043580 288 VMIVDLISA--CGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIR 365 (665)
Q Consensus 288 ~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 365 (665)
+|.....+ -+..|.+.++...+..+.... .........+.. ++..+...+.-
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE------------------------~~ir~akd~~~ 683 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAE------------------------SVIRDAKDSAI 683 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHH------------------------HHHHHHHHHHH
Confidence 23222222 245566667766666554421 000001111111 11111112222
Q ss_pred cCCHHHHHHHHhhcCC-------C----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCc
Q 043580 366 NGMIEDARQLFNNMQK-------R----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT 434 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 434 (665)
.|-..+|...++.-.+ . +...|-.+. .|..+|-... .. .|+......+..-....+.
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhccc
Confidence 2222222222221110 0 111111111 1111221111 00 1222222222111111111
Q ss_pred H---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHHHchhC-CCCcchHHHHHHHHHh
Q 043580 435 L---K---EGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CG----SINTAFEVFYHIRDR-TTSVSPWNAIICGLAM 499 (665)
Q Consensus 435 ~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 499 (665)
. + -+.+.+-.-.+ +..++..+..++.-|.+ ++ +...|...+.+..+. ..+...|+.|... ..
T Consensus 752 l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG 828 (1238)
T ss_pred CcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc
Confidence 1 1 00011100001 11112222222222221 11 223566667666665 3344456655444 55
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
.|++.-+...|-+-+... +-+..+|..+.-.+.+..+++-|...|...+ .+.| |...|-....+....|+.-++.
T Consensus 829 ~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred cchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 567777766666555542 4456677777778888888888888888887 4577 6777766666666778888888
Q ss_pred HHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHH----------HHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 579 EVIRSMP-------MKADVVIWGTLLAASRIHGNVEVGER----------AAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 579 ~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
.+|..-. .-|+...|..........|+.+.-+. .+++.++-.|+...+|...+...-+.+.++
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 8776621 11444444433334445555544443 445556677888888888888888888888
Q ss_pred HHHHHHHHHH
Q 043580 642 DAFSIRKEMR 651 (665)
Q Consensus 642 ~A~~~~~~~~ 651 (665)
+|.+...+++
T Consensus 985 ~a~ela~Rli 994 (1238)
T KOG1127|consen 985 AALELATRLI 994 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=3.4e-08 Score=81.89 Aligned_cols=90 Identities=9% Similarity=-0.186 Sum_probs=44.0
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+...+...|++++|...|+.+. .. .+...|..+..++...|++++|+..|+++++++|+++..+..+|.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 3444444555555555554443 11 234444444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhC
Q 043580 642 DAFSIRKEMRDC 653 (665)
Q Consensus 642 ~A~~~~~~~~~~ 653 (665)
+|++.|+++++.
T Consensus 110 eAi~~~~~Al~~ 121 (144)
T PRK15359 110 LAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=2e-07 Score=85.88 Aligned_cols=183 Identities=8% Similarity=-0.073 Sum_probs=126.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH---H
Q 043580 452 LNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV----SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSI---T 524 (665)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~ 524 (665)
.....+..++..+...|+++.|...|+++....|+. ..+..+..++...|++++|...++++.+.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 344566677778888888888888888887764432 356777788888888888888888888753 11222 3
Q ss_pred HHHHHHHhccc--------ChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 043580 525 FIGVLSTCCHA--------GLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT 595 (665)
Q Consensus 525 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 595 (665)
+..+..++... |+++.|.+.++.+.+. .|+ ...+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44455555543 6788888888888754 563 333322221111 01100 011124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+...+.+.|++++|+..++++++..|+.+ ..+..++.++...|++++|.++++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678899999999999999999988765 56889999999999999999999888654
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=2.3e-07 Score=91.80 Aligned_cols=222 Identities=13% Similarity=0.010 Sum_probs=174.4
Q ss_pred CCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHH
Q 043580 416 KPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIIC 495 (665)
Q Consensus 416 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 495 (665)
+|-...-..+...+...|-...|..++++... +..++.+|...|+..+|..+.....+.+|++..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 33333344556677777888888888877543 456888899999999999988888777788888888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCCh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 574 (665)
.....--+++|.++.+..... .-..+.......++++++.+.|+.-. .++| ...+|-.+.-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 777766778888877665432 12222223344789999999998877 5577 788898888888999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 575 EDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 575 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..|.+.|.... ..| +...|+++-.+|.+.|+-.+|...++++++.+-++..++....-+..+.|.+++|++.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999998875 455 5688999999999999999999999999999988888887777778999999999999999987
Q ss_pred CCCc
Q 043580 653 CGMK 656 (665)
Q Consensus 653 ~~~~ 656 (665)
....
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 5443
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=1.5e-07 Score=87.73 Aligned_cols=217 Identities=11% Similarity=0.079 Sum_probs=123.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH-HHHHHHHHccCcHH
Q 043580 358 ALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM-VSVFCAIASSGTLK 436 (665)
Q Consensus 358 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~ 436 (665)
.+.+++...|+++.++.-...-..+.......+...+...++-+.++.-+++....+..++..++ ......+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 34455555555554444443333334444444443333323444454444443333322222222 22234455667777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHH----HHhcCChHHHHHHHHH
Q 043580 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICG----LAMHGDANLTLKIYSD 512 (665)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~ 512 (665)
+|.+++... .+.......+.+|.+.++++.|.+.++.|.+...| .+...+..+ +...+.+..|..+|++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 776665432 34455566777888888888888888888775333 223333333 3333468888888888
Q ss_pred HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCCh-HHHHHHHHhCC
Q 043580 513 LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQL-EDAEEVIRSMP 585 (665)
Q Consensus 513 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 585 (665)
+.+. ..++..+.+.+..++...|++++|.+++.+.. ...| ++.+...++.+....|+. +.+.+++.++.
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 7654 46777888888888888888888888888876 4466 677777777777777777 55667777775
No 107
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=3.7e-07 Score=86.14 Aligned_cols=118 Identities=9% Similarity=-0.049 Sum_probs=48.4
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCCh--HH
Q 043580 430 ASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG-SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDA--NL 505 (665)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~ 505 (665)
...+..++|......+++.+. -+..+++....++...| .+++++..++++... +.+..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 334444455555554444321 11122222223333333 344455554444443 22233344333333333331 34
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhH
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMK 549 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 549 (665)
++..++++.+.. +-|...|+....++...|+++++++.++++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444432 2344444444444444455555555555544
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=5.9e-07 Score=93.64 Aligned_cols=132 Identities=13% Similarity=0.010 Sum_probs=86.9
Q ss_pred CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 043580 518 IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWG 594 (665)
Q Consensus 518 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 594 (665)
+..+...+..|.......|.+++|..+++.+. .+.| +......++.++.+.+++++|+..+++.. ..| +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34456666666666666777777777777766 3466 45556666666677777777777766665 334 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+..++.+.|++++|..+|+++...+|+++..+..++.++...|+.++|...|+++.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666777777777777777766666666677777777777777777777776655
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=6e-07 Score=78.09 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=93.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 491 NAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 491 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..+-..+...|+-+....+........ +-|.......+....+.|++..|...+.+... ..| |...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~---l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR---LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc---cCCCChhhhhHHHHHHH
Confidence 444455555666666655555544321 33444455566666666666666666666663 344 6666666666666
Q ss_pred hcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 570 RAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+.|++++|..-+.+.. .. -++...+.+...+.-.|+++.|..++..+....+.++.....|+.+....|++++|..+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6677666666665553 22 345556666666666677777777766666666666666666666666667766666554
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=6.9e-08 Score=80.08 Aligned_cols=122 Identities=7% Similarity=-0.064 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 508 KIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 508 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
.++++.++. .|+. +......+...|++++|...|+... .+.| +...+..++.++...|++++|...++++.
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345555553 4543 4556778888999999999999988 5578 78899999999999999999999999986
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
.+.++..+..++.++...|+.++|+..+++++++.|+++..+..++.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 334788899999999999999999999999999999999988888776543
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=1.5e-05 Score=89.73 Aligned_cols=324 Identities=11% Similarity=-0.019 Sum_probs=188.7
Q ss_pred HHHhcCChHHHHHHHHhcc----CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CC---c-----chHHHHHHHH
Q 043580 331 FYAACGRINLARLQFELGI----KDHIASWNALIAGFIRNGMIEDARQLFNNMQK----RD---V-----YSWSAMISGY 394 (665)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~ 394 (665)
.....|+.+.+..+++... ..++.........+...|+++++...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3444566665555554321 11122223334445566777777776664421 11 1 1112233445
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHccCcHHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNE----ITMVSVFCAIASSGTLKEGRWAHEYVLNNSI---TL--NDNLSAAIIDMYA 465 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 465 (665)
...|+++.|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5678888888888877653111111 2233444556678888888888877754211 11 1133445566778
Q ss_pred hcCCHHHHHHHHHHchhC-----CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hHHHHHHHHHh
Q 043580 466 KCGSINTAFEVFYHIRDR-----TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRN--IKLN--SITFIGVLSTC 532 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~ 532 (665)
..|+++.|...+++.... .++ ...+..+...+...|++++|...+.+..... ..+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 888888888887765543 111 1123344556667789999988888765531 1121 23444455667
Q ss_pred cccChHHHHHHHHHHhHhhcCCCCChhHH-----HHHhhHhhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEPDLKHY-----GCMVDLLGRAGQLEDAEEVIRSMPMK--ADV----VIWGTLLAASR 601 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~ 601 (665)
...|+++.|...++.......-......+ ...+..+...|+.+.|...+...... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77889999988888875421111111111 11223445578888888888776521 111 11345666778
Q ss_pred hcCCHHHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 602 IHGNVEVGERAAKSLAGLQP------SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..|+.++|...++++.+... .....+..++.++...|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999988876422 222346678888999999999999999888754
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=4.5e-07 Score=77.99 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=110.2
Q ss_pred cCcHHHHHHHHHHHHH---cC-CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHH
Q 043580 432 SGTLKEGRWAHEYVLN---NS-ITLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 432 ~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 505 (665)
..+.++..+++..+.. .| ..++. .+|..++-+...+|+.+.|...++.+...-|. ..+-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4456666666666652 33 33444 34445555556666777777777766665322 2222222223445566667
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
|+++++.+.+.+ +.|..++..-+...-..|+..+|++-+....+. +.-|...|.-+.+.|...|++++|.-.++++.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777776666654 445555655555555556666666666665542 33366666667777777777777766666664
Q ss_pred -CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCCchHHH
Q 043580 586 -MKA-DVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 586 -~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
..| ++..+..+...+.-.| +.+-|..+|.+++++.|.+...++-
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 334 4444555555544333 4566666666666666654444433
No 113
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=3.1e-06 Score=80.03 Aligned_cols=230 Identities=14% Similarity=0.072 Sum_probs=142.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhH-HHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT-MVSVFCAIASSG-TLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
++..+-..+...++.++|+.+..++++ +.|+..| +...-.++...+ +++++...++.+.+.+.+ +..+++....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 455555666778889999999999988 4566554 333334455556 578899999888876533 33345544444
Q ss_pred HHhcCCH--HHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc---Ch
Q 043580 464 YAKCGSI--NTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA---GL 537 (665)
Q Consensus 464 ~~~~~~~--~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 537 (665)
+.+.|+. +++..+++++... +.+..+|+....++...|+++++++.++++++.+ .-|...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 5555653 6778888787776 5567788888888889999999999999999876 44555666555444433 21
Q ss_pred H----HHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 538 V----DLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 538 ~----~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
. ++...+..+++ ...| |...|+.+..++...+.. .+...+|...
T Consensus 195 ~~~~~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~----------------------------l~~~~~~~~~ 243 (320)
T PLN02789 195 LEAMRDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEA----------------------------LVSDPEVSSV 243 (320)
T ss_pred ccccHHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcc----------------------------cccchhHHHH
Confidence 1 23444444444 2345 555555555544331110 1223345555
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcC------------------ChhHHHHHHHHH
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAG------------------RWEDAFSIRKEM 650 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~ 650 (665)
..++...+|+++.+...|+.+|+... ..++|.++++.+
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 55555556666666666666665422 236677777766
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=2.3e-06 Score=73.79 Aligned_cols=184 Identities=11% Similarity=0.113 Sum_probs=119.4
Q ss_pred CCCchHHHHHHHHHHH---CC-CCCChhH-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 043580 397 NEQPNMALELFHGMVD---AG-VKPNEIT-MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSIN 471 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (665)
..+.++..+++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+...- +-+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3456777777777653 33 4455543 4455566667777777777777776543 333333333333455667777
Q ss_pred HHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh
Q 043580 472 TAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS 550 (665)
Q Consensus 472 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 550 (665)
+|+++++.+.+. +.|..++-.=+......|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 777777777776 444556666666666677777777777776665 46677777777777777777777777777777
Q ss_pred hcCCCC-ChhHHHHHhhHhhhcC---ChHHHHHHHHhCC
Q 043580 551 VYNVEP-DLKHYGCMVDLLGRAG---QLEDAEEVIRSMP 585 (665)
Q Consensus 551 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 585 (665)
-+.| ++..+..+.+.+.-.| +.+-|.+++.+..
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5567 6666677777665544 4556666666654
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1e-06 Score=85.08 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=106.2
Q ss_pred HHHHHH-HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 507 LKIYSD-LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 507 ~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
.++|-+ ....+..+|+.....|.-.|.-.|++++|+..|+.+. .++| |..+||.|.-.++...+.++|++.|.++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 333333 3444545778888888888888999999999999988 5588 7888999999999999999999999887
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----C-----CchHHHHHHHHHhcCChhHHHHH
Q 043580 585 P-MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS-----H-----GPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 585 ~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
. .+|. ...+..|+-+|...|.+++|...|-.++.+.+. . ..++..|-.++...++.|-+.+.
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6 5564 567788888999999999999999988877654 1 13577777777777877755544
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=2e-07 Score=77.23 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=69.6
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
...| +......++..+...|++++|.+.++.+. .+.+...|..+..++...|++++|...++++++.+|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3455 44555566666677777777777776654 22355666667777777777777777777777777777777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|.+.++++.+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7777777777777777777776654
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.69 E-value=2e-07 Score=75.43 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=90.0
Q ss_pred CCC-C-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 553 NVE-P-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 553 ~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
++. + +....-.+...+...|++++|..+|+-+. ..| +...|..|..++...|++++|+..|.++..++|+++..+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 4 45556667778889999999999999875 334 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 629 LLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+++.+|...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998854
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=1e-06 Score=76.70 Aligned_cols=133 Identities=18% Similarity=0.102 Sum_probs=115.3
Q ss_pred CC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 043580 519 KL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWG 594 (665)
Q Consensus 519 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 594 (665)
.| |... ..+...+...|+-+....+..... ...| +......+++...+.|++.+|+..+++.. .++|...|+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~---~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSA---IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhh---ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 44 4444 666677788888888888888765 2345 77777789999999999999999999986 557999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+..+|.+.|+++.|...|.+++++.|+++.....|+..|.-.|+++.|..++.++...+.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999877654
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.4e-06 Score=86.49 Aligned_cols=189 Identities=13% Similarity=0.148 Sum_probs=162.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 449 SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
+++|-...-..+.+.+...|-...|..+|+++.. |.-.+.+|...|+..+|..+..+..+ -+|+...|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlem-------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEM-------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 4455556667788999999999999999988776 88899999999999999999998888 38999999999
Q ss_pred HHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNV 606 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 606 (665)
........-+++|.++.+....+ .-..+.....+.+++.++.+.++... ..| ...+|..+..+..+.++.
T Consensus 464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 99888888889999988876432 33334444556899999999998764 444 788999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.|...|...+.++|++...|..|.-+|.+.|+..+|...+++++..+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999998876
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=3.2e-06 Score=74.30 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=118.7
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHH
Q 043580 461 IDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 540 (665)
+..|...|+++.+....+.+.. +. ..+...++.+++...+++..+.. +.|...|..+...|...|+++.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4567778887776544433322 11 01123567788888888888765 6688899999999999999999
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhHh-hhcCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDLL-GRAGQ--LEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAK 614 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (665)
|...|++.. .+.| +...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..++
T Consensus 92 A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998 4578 788888888864 67777 599999999986 344 67888889999999999999999999
Q ss_pred HHhccCCCCCchH
Q 043580 615 SLAGLQPSHGPSR 627 (665)
Q Consensus 615 ~~~~~~p~~~~~~ 627 (665)
+++++.|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999998877643
No 121
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=3.3e-06 Score=83.50 Aligned_cols=196 Identities=10% Similarity=0.003 Sum_probs=105.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSI-TLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGL 497 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 497 (665)
.+..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++.....|+ ...+.. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444555555666665555555443221 2222 11222233456667777777777776665333 223332 1122
Q ss_pred H----hcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 498 A----MHGDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 498 ~----~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
. ..+....+.+.+.. ..+..|+ ......+...+...|++++|.+.+++..+ ..| +...+..+..+|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHc
Confidence 2 23344444444433 1111232 23344455566677777777777777764 355 456666777777777
Q ss_pred CChHHHHHHHHhCCC-C---CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 572 GQLEDAEEVIRSMPM-K---ADV--VIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 572 g~~~~A~~~~~~~~~-~---~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
|++++|...+++... . |+. ..|..+...+...|++++|...++++....|.
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 777777777776541 1 221 23445666677777777777777777655553
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=3.7e-06 Score=77.44 Aligned_cols=185 Identities=12% Similarity=-0.002 Sum_probs=130.1
Q ss_pred CChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc----hH
Q 043580 417 PNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT-LN-DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS----PW 490 (665)
Q Consensus 417 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 490 (665)
.....+......+...|+++.|...++.+...... |. ...+..+..++...|++++|...++++.+..|+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777788889999999999999999875432 11 24567788999999999999999999988745432 35
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHH
Q 043580 491 NAIICGLAMH--------GDANLTLKIYSDLEKRNIKLNS-ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHY 561 (665)
Q Consensus 491 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 561 (665)
..+..++... |+.+.|.+.++++... .|+. ..+..+..... .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HHH
Confidence 5555666554 7889999999999886 4543 22222211100 00 0000 112
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMP-M---KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..+...|.+.|++++|...++++. . .| ....+..++.++.+.|++++|..+++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 256677889999999999998875 2 22 3567888999999999999999998888766553
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.7e-05 Score=67.98 Aligned_cols=190 Identities=15% Similarity=0.050 Sum_probs=128.4
Q ss_pred HHHHccCcHHHHHH-HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHH
Q 043580 427 CAIASSGTLKEGRW-AHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 427 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 505 (665)
......++.+.... +.+.+.......+......-...|...|++++|.+..... .+......=...+.+..+.+.
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~ 155 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDL 155 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHH
Confidence 33333444443332 3333333333333333344455677888888888877763 223333333455667778888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcc----cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCH----AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
|.+.+++|.+ -.+..|.+.|..++.+ .+.+..|.-+|+++-+ +..|++.+.+..+.++...|++++|..++
T Consensus 156 A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 156 AEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 8888888887 3466677777777765 3568888889999875 46778888888888888999999999999
Q ss_pred HhCCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccCCCCCc
Q 043580 582 RSMPMK--ADVVIWGTLLAASRIHGN-VEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 582 ~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~ 625 (665)
+++..+ .++.++..++.+-...|. .+.-.+.+.++....|.++-
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 888633 577888777777666664 56677788888888888765
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=1.6e-05 Score=75.73 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=72.3
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~ 608 (665)
+...|++++|+..++.+... .| |+.......+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456666666666666632 55 55555566666666666667666666664 3343 4555566666666666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 609 GERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
|+..++.....+|+++..|..|+.+|..+|+..+|...+.+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666666666666666666666666666555555554444
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.0001 Score=82.96 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=163.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----CCc----chHHHHHHHHHhCCCchHHHHHHHHHHHCCC---CCC--hhHHHHHHH
Q 043580 361 AGFIRNGMIEDARQLFNNMQK----RDV----YSWSAMISGYAQNEQPNMALELFHGMVDAGV---KPN--EITMVSVFC 427 (665)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~ 427 (665)
..+...|++++|...++.... .+. ...+.+...+...|+++.|...+++.....- .+. ...+..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345567777777777765432 111 2345556667778888888888877664211 111 223445556
Q ss_pred HHHccCcHHHHHHHHHHHHH----cCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCC--cchHHHHH
Q 043580 428 AIASSGTLKEGRWAHEYVLN----NSITL---NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR----TTS--VSPWNAII 494 (665)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~l~ 494 (665)
.+...|+++.|...++...+ .+... ....+..+...+...|++++|...+...... .+. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 67778899988888877654 22111 1223445566677789999998888776553 111 22344456
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-ChHHH-----HHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHh
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRNIKL-NSITF-----IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMV 565 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 565 (665)
..+...|+++.|...+++.....-.. ....+ ...+..+...|+.+.|..++...... ..... ...+..+.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHH
Confidence 67778899999999888875431111 11111 11123344578889999988776532 11111 11234677
Q ss_pred hHhhhcCChHHHHHHHHhCCC-----C-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 566 DLLGRAGQLEDAEEVIRSMPM-----K-A--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~-----~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.++...|++++|...++++.. . + ...+...+..++...|+.++|...+.+++++......
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 788889999999999888751 1 1 1235556677788999999999999999887654433
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=0.0015 Score=67.30 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 490 WNAIICGLAMHGDAN---LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
.+.|+..+.+.++.. +|+-+++...... +-|..+-..++..|+-.|-...|.++|+.+.-+ .+.-|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHH
Confidence 455667777777655 3444444444432 335556666777777778778888877777655 5555544442 233
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCCh
Q 043580 567 LLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRW 640 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 640 (665)
.+...|++..+...+.... ...+..--..++...++.|.+.+..++..---.++-+. ...-......++..++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 4455667777777666543 11111111223444456677766666554333322211 11123444556666666
Q ss_pred hHHHHHHHHHH
Q 043580 641 EDAFSIRKEMR 651 (665)
Q Consensus 641 ~~A~~~~~~~~ 651 (665)
+.-...+..+.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 66666665554
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=5.5e-06 Score=88.03 Aligned_cols=233 Identities=10% Similarity=0.096 Sum_probs=154.6
Q ss_pred CCC-hhHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchH
Q 043580 416 KPN-EITMVSVFCAIASSGTLKEGRWAHEYVLN-NSITLND---NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPW 490 (665)
Q Consensus 416 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 490 (665)
.|| ...|...+.-....++.+.|+++.++++. .++.-.. .+|.++++.-..-|.-+...++|+++.+.......|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 344 34566667777777888888888888764 2332222 345566666666677777788888887764445567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhH
Q 043580 491 NAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMVDL 567 (665)
Q Consensus 491 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~ 567 (665)
..|...|.+.+..++|.++++.|.++ +......|...+..+.+.++-+.|..++.+..+. -|. .......+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 77888888888888888888888775 3455667888888888888888888888887743 443 4445555666
Q ss_pred hhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCCchHH-HHHHHHHhcCChhH
Q 043580 568 LGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ--PSHGPSRV-LLSNIYADAGRWED 642 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~-~l~~~~~~~g~~~~ 642 (665)
-.+.|+.+.+..+|+... .+...+.|+.++..-.++|+.+.+..+|++++.+. |.....++ .+...-...|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 667888888888887775 22356778888888888888888888888886554 44443333 22222223366555
Q ss_pred HHHHHHHHHh
Q 043580 643 AFSIRKEMRD 652 (665)
Q Consensus 643 A~~~~~~~~~ 652 (665)
+..+=.++.+
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.2e-07 Score=55.34 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=26.9
Q ss_pred CCCCCcchHHHHHHHHHhcCCchHHHHHHhhcC
Q 043580 53 GLESNTFIQNSLINLYAKCGLISQAKSMFDSCS 85 (665)
Q Consensus 53 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (665)
|++||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888773
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=1.3e-05 Score=84.60 Aligned_cols=161 Identities=10% Similarity=0.053 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
.+..+..+|-+.|+.++|..+|+++... +.++.+.|.+.-.|+.. +.++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 4444555555555555555555555554 33344555555555555 555555555554442 333
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
.+++..+.++|.++.. ..| +...+-.+.+.....- ...--..++..+-..|....++++++.++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHR------------EFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhh------------ccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455555555555552 233 2322222222211110 11223345555667778888999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 614 KSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 614 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+.+++.+|++..+..-|+.+|. ++|.+ -..+++.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 9999999999999988988877 44444 3344443
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.0016 Score=63.07 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=123.6
Q ss_pred chHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 043580 400 PNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITL-NDNLSAAIIDMYAKCGSINTAFEVFY 478 (665)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 478 (665)
.+.....++++...-..--..+|...++...+..-+..|..+|.++.+.+..+ +..+.+++++.|| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566666666654322233456677777788888889999999998877766 6677788887666 677888999998
Q ss_pred HchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccChHHHHHHHHHHhHhhcC--
Q 043580 479 HIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN-- 553 (665)
Q Consensus 479 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 553 (665)
.-...-+| +.--...+.-+...++-..+..+|++....++.|+. ..|..++.--..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 77666344 444556777788889999999999999988766654 5899999888889999999988888776544
Q ss_pred CCCChhHHHHHhhHhhhcCCh
Q 043580 554 VEPDLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~ 574 (665)
..|....-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 333223333445555444443
No 131
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=4.5e-06 Score=74.26 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=92.4
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNV 606 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 606 (665)
.-+.+.+++.+|+..|.+.+ .+.| |+..|..-..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34567889999999999998 6688 88888888999999999999999988876 445 567899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
++|++.|+++++++|++..+...|..+-.+.+..+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988888877766666555
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=3e-06 Score=70.16 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=91.3
Q ss_pred HHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 509 IYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 509 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
.+++.... .| +......+...+...|++++|.+.++.+... .| +...+..+..++...|++++|...+++..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555553 44 4455666777888899999999999998753 56 78888889999999999999999998874
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.+.+...+..+..++...|++++|...+++++++.|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 334678888888899999999999999999999999887743
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.5e-07 Score=53.99 Aligned_cols=32 Identities=31% Similarity=0.599 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 553 NVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=4.9e-05 Score=66.37 Aligned_cols=143 Identities=12% Similarity=0.040 Sum_probs=114.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh--
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR-- 570 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 570 (665)
-...|...|++++|++.++... . ......=...+.+..+.+.|.+.+++|.+- -+..|.+.|+.+|.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~----~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE----N--LEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHh
Confidence 3456889999999999887622 1 222333344566788999999999999842 355667767766654
Q ss_pred --cCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 571 --AGQLEDAEEVIRSMPM--KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 571 --~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
.++..+|.-+|+++.. .|++.+.+....++...|++++|..+++.++..+++++.+...++-+-...|+..++.+
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 4689999999999974 58999999999999999999999999999999999999999999888888898876654
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=1.4e-05 Score=84.38 Aligned_cols=207 Identities=9% Similarity=-0.028 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHH
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLA 498 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 498 (665)
...+..|+..+...++++++.++.+...+.. +-....|-.+...+...++.+++..+ . ++....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~-------------~l~~~~ 94 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N-------------LIDSFS 94 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h-------------hhhhcc
Confidence 3456667777777788888887777555543 22223444444466666665555444 2 222333
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
...++..+..+...|.+. .-+...+..+..+|.+.|+.++|..+|+++.+ +.| |+.+.|.++..|... ++++|
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-hHHHH
Confidence 334444444444455552 34456888899999999999999999999995 468 899999999999999 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH--------H------------HHHHhc
Q 043580 578 EEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL--------S------------NIYADA 637 (665)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--------~------------~~~~~~ 637 (665)
.+++.++. ..+...+++..+..+.+++.+.+|++...+.++ + ..|...
T Consensus 169 ~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 169 ITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 99998874 336666788888888888888888877653222 2 456677
Q ss_pred CChhHHHHHHHHHHhCCCccCC
Q 043580 638 GRWEDAFSIRKEMRDCGMKRLP 659 (665)
Q Consensus 638 g~~~~A~~~~~~~~~~~~~~~~ 659 (665)
++|+++.++++.+++...++.+
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchh
Confidence 8999999999999987665443
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=6.7e-06 Score=68.68 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=77.2
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-CCH----HHHHHHHH
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-ADV----VIWGTLLA 598 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~ 598 (665)
|..++..+ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+... |++ .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333333 35666777777777775422221 1233334566677777777777777776522 332 23445566
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.+...|++++|+..++.. .-.+-.+..+..+|.+|...|++++|++.|+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888887653 233444556778888888888888888888765
No 137
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=8.4e-05 Score=79.49 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=151.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhccCC--------chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-cchHH
Q 043580 319 DCYDFIQATIIHFYAACGRINLARLQFELGIKD--------HIASWNALIAGFIRNGMIEDARQLFNNMQKR-D-VYSWS 388 (665)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 388 (665)
|.+...|-..+......++.+.|+++.++.+.. -...|.++++....-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 444555666777777777777777777754421 2346777777777777777888888877654 3 34677
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhc
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT-LNDNLSAAIIDMYAKC 467 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 467 (665)
.|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.+.-+.|..++.++++.-.+ -........+.+-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888875 3345566777778888888888888888887765332 1234445556667788
Q ss_pred CCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccChHH
Q 043580 468 GSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~ 539 (665)
|+.+.+..+|+..... +.....|+..+..-.++|+.+.+..+|++.+..++.|-. ..|...+..--..|+-.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 8888888888877766 445678888888888888888888888888887776633 23444444333344433
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=4.6e-05 Score=79.84 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=76.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 043580 486 SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGC 563 (665)
Q Consensus 486 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 563 (665)
++..+..|.......|++++|..+|+...+. .| +......++..+.+.+++++|....++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 3455555556666666666666666666653 34 333455555566666666666666666653 355 4555555
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
+..++...|++++|..+|+++. ..| +...+..+..++...|+.++|...|+++++.....
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 6666666666666666666655 223 25556666666666666666666666665554433
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=5.1e-05 Score=72.36 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 568 (665)
+......+...|+++.|+..++.++..- +.|..........+...++.++|.+.++++.. ..|+ ....-.+..+|
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHH
Confidence 3333444556677777777777777652 33455555566677777777888887777773 4664 55566677777
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
.+.|++.+|+.++++.. .+.++..|..|..+|...|+..++.... +..|.-.|+++.|+..
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHH
Confidence 77788888877777765 3346777777777777777766665543 3446666777777777
Q ss_pred HHHHHhCC
Q 043580 647 RKEMRDCG 654 (665)
Q Consensus 647 ~~~~~~~~ 654 (665)
+..+.++.
T Consensus 448 l~~A~~~~ 455 (484)
T COG4783 448 LMRASQQV 455 (484)
T ss_pred HHHHHHhc
Confidence 76666653
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.2e-06 Score=74.49 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=96.1
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCCchH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
-+| |...|..|...|...|+...|..-|.+.. ..+++..+..+..++..+. +..++..++++++.++|.+....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 378 89999999999999999999999999986 4467888888888865433 47899999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCccc
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSG 663 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 663 (665)
..|+..+...|++.+|...|+.|++.....+|.-+-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 999999999999999999999999987766665443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=6.5e-06 Score=79.32 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=99.4
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASR 601 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 601 (665)
....++..+...++++.|+.+|+++.+. .|+ ....+++.+...++..+|++++++.. ..| +...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666678899999999998865 465 34457888888888899999988876 334 6666666677788
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 602 IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+.++++.|+.+.++++++.|++-..|..|+.+|...|++++|+-.++.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999888765
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.31 E-value=1.3e-06 Score=62.20 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG-RWEDAFSIRKEMRDC 653 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 653 (665)
++.+|..++..+...|++++|+..++++++++|+++..+..+|.+|...| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999 799999999998764
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.30 E-value=0.0038 Score=59.32 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=73.8
Q ss_pred HHhcCC-HHHHHHHHHHchhC-CCCcchHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCCh----HHHHHHHH
Q 043580 464 YAKCGS-INTAFEVFYHIRDR-TTSVSPWNAII----CGLAM---HGDANLTLKIYSDLEKRNIKLNS----ITFIGVLS 530 (665)
Q Consensus 464 ~~~~~~-~~~A~~~~~~~~~~-~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~ 530 (665)
+.+.|. -++|.++++.+..- +.|..+-|... .+|.+ .....+-+.+-+-+.+.|++|-. ..-|.+..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 444554 66777777777765 23333322222 12221 22344444455555667776632 23344433
Q ss_pred H--hcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 043580 531 T--CCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWG 594 (665)
Q Consensus 531 ~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 594 (665)
+ +...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++.+++ |+..+++
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 3 345677777776665555 567888888888888888888888888888775 4444443
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=4.5e-07 Score=67.39 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=58.3
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 571 AGQLEDAEEVIRSMP-MKA---DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
.|+++.|+.+++++. ..| +...+..+..++.+.|++++|+.++++ .+.+|.++.....+|.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467777777777775 223 345566677888888888888888888 777777777777888889999999999888
Q ss_pred HHHH
Q 043580 647 RKEM 650 (665)
Q Consensus 647 ~~~~ 650 (665)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8764
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=3.4e-05 Score=74.48 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
....|+..+...++++.|..+|+++.+.. +.....++..+...++-.+|.+++++.+... +.+...+..-...|.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34567777778889999999999999854 4456668888888889999999999999753 45677777777888899
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK 587 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (665)
++++.|.++.+++. .+.| +..+|..|+.+|...|+++.|+-.+..++..
T Consensus 248 ~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999998 5689 7889999999999999999999999998733
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=1.3e-05 Score=64.66 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=61.5
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---CchHHHHH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH---GPSRVLLS 631 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 631 (665)
++..++..+.+.|++++|.+.++++. ..|+ ...+..+..++.+.|+++.|...++++....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666677777777666664 1222 2345556666777777777777777777766665 34466677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 043580 632 NIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.++.+.|++++|.+.++++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777766543
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.21 E-value=3e-06 Score=59.37 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+...+...|++++|+..++++++..|+++..+..+|.++...|++++|.+.|+++++...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566788999999999999999999999999999999999999999999999999987543
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=1.2e-05 Score=62.01 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=78.7
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.+..++..+...|++++|...++++. ..| +...+..+..++...|++++|...++++....|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35567777888899999999888865 233 4467777888888899999999999999999999988889999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 043580 638 GRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 638 g~~~~A~~~~~~~~~~~ 654 (665)
|++++|.+.++++.+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998887643
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=6e-06 Score=80.21 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=90.3
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIH 603 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 603 (665)
.-...+...|+++.|+..|+++.+ ..| +...|..+..+|...|++++|+..++++. ..| +...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 344566778999999999999984 477 78888899999999999999999999986 334 677888889999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
|+++.|+..++++++++|+++.....+..+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998877776664444
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=9e-05 Score=61.85 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=78.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhHhhhcCC
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLN---SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 573 (665)
..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ....-.|..++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 3677777777777777753 222 123344556677788888888888888765 32222 2234456777888888
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 574 LEDAEEVIRSMPMK-ADVVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 574 ~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
+++|+..++..... ..+..+...+..+.+.|+.++|...|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888888776533 345556667777888888888888888763
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.4e-06 Score=49.84 Aligned_cols=35 Identities=34% Similarity=0.614 Sum_probs=31.6
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCH
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNE 155 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 155 (665)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999973
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=6.7e-06 Score=73.21 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=83.4
Q ss_pred hhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWED 642 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 642 (665)
.+-+.+.+++.+|+..|.+++ ..| ++..|..-..+|.+.|.++.|++-.+.++.++|.....|..||.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345668899999999999986 445 677788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccC
Q 043580 643 AFSIRKEMRDCGMKRL 658 (665)
Q Consensus 643 A~~~~~~~~~~~~~~~ 658 (665)
|.+.|+++++....+.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 9999999988765443
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=98.08 E-value=3.7e-05 Score=62.76 Aligned_cols=100 Identities=9% Similarity=-0.064 Sum_probs=82.4
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
|+.+ .....-....-+...|++++|..+|+-+. ..-++..|..|..++...+++++|+..|-.+.-+++++|...++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 5555 23333344555668899999999998875 33467788888888999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.|.+|...|+.+.|++.|+.+++
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999988877
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=6.2e-06 Score=48.71 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=28.9
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCC
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIP 153 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 153 (665)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888999999999999999999888887
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.08 E-value=3.6e-05 Score=66.55 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=74.8
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
....+..++..+...|++++|...++++. ..|+ ...+..++.++.+.|++++|...++++++..|+++..+..++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34556677777778888888888887765 1221 356778888888999999999999999999998888888888
Q ss_pred HHHHhcCC--------------hhHHHHHHHHHHhCC
Q 043580 632 NIYADAGR--------------WEDAFSIRKEMRDCG 654 (665)
Q Consensus 632 ~~~~~~g~--------------~~~A~~~~~~~~~~~ 654 (665)
.+|...|+ +++|.++++++...+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 88888776 566777776666544
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.9e-06 Score=48.97 Aligned_cols=34 Identities=41% Similarity=0.803 Sum_probs=31.4
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCC
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPN 286 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 286 (665)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999997
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.06 E-value=7.6e-05 Score=75.74 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..+..+.......|++++|...++++++++|+ ...|..+|+++...|+.++|.+.++++...+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444433344445555555555555555552 3445555555555555555555555554443
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=4.4e-05 Score=74.27 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=73.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
....+...|+++.|++.|+++++.. +.+...|..+..+|...|++++|+..++++.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455667788888888888888764 44666777778888888888888888888874 467 677788888888888
Q ss_pred CChHHHHHHHHhCC-CCCCHHHH
Q 043580 572 GQLEDAEEVIRSMP-MKADVVIW 593 (665)
Q Consensus 572 g~~~~A~~~~~~~~-~~~~~~~~ 593 (665)
|++++|...++++. ..|+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888888875 44543333
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=7.9e-06 Score=48.25 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=29.2
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCC
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAP 285 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 285 (665)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888887
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=8.2e-05 Score=59.92 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=75.8
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLL 597 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 597 (665)
++..+...+...|++++|.+.|+.+.+...-.| ....+..++.++.+.|++++|...++++. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566677778888888888888875411111 23456668888888888888888888775 2232 45677788
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888889999999999999999888876643
No 161
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.033 Score=57.94 Aligned_cols=117 Identities=9% Similarity=0.093 Sum_probs=64.9
Q ss_pred HHHHHHhcccChHH---HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHH-H
Q 043580 526 IGVLSTCCHAGLVD---LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-ADVVIWGTLLA-A 599 (665)
Q Consensus 526 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~-~ 599 (665)
+.++..|.+.++.. +|+-+++.... ..| |..+--.++.+|.-.|-+..|.++++.+..+ ...+|...++- .
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 44555666665544 34445555442 345 5555556777777777777777777777644 33444444433 3
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
+...|++..+...++....+..++..-..-++..-.+.|.+.+-.+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~e 562 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPE 562 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHH
Confidence 4566777777777777766554443333333333344455444433
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00018 Score=67.04 Aligned_cols=157 Identities=14% Similarity=0.070 Sum_probs=95.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHH------------
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGC------------ 563 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~------------ 563 (665)
++...|++++|..+-....+.. ..+......-..++...++.+.|...|++.. .+.|+...-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHH
Confidence 3455667777666665555532 2222222222223334566677777777666 34554222111
Q ss_pred -HhhHhhhcCChHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 564 -MVDLLGRAGQLEDAEEVIRSMP------MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 564 -l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
=.+-..+.|++.+|.+.+.+.. .+|+...|.....+..+.|+..+|+.--+.++.++|.....+..-+.++..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 1223446677777777777765 224445555556666677788888888888888887777777777777777
Q ss_pred cCChhHHHHHHHHHHhCCCc
Q 043580 637 AGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 637 ~g~~~~A~~~~~~~~~~~~~ 656 (665)
.++|++|.+.++++.+....
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 88888888877777765444
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00036 Score=70.99 Aligned_cols=121 Identities=9% Similarity=0.027 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHcCCCCCh-HHHHHHHHHhcc--------cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 503 ANLTLKIYSDLEKRNIKLNS-ITFIGVLSTCCH--------AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 503 ~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...|..+|++.++. .|+. ..|..+..++.. .++...+.+..++.... ...| ++..|..+...+...|
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-ccCcCChHHHHHHHHHHHhcC
Confidence 45566666666664 4432 333333222211 12234445555544432 2233 6678888877777889
Q ss_pred ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 573 QLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 573 ~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
++++|...++++. ..|+...|..++..+...|+.++|...+++++.++|.+++.
T Consensus 435 ~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9999999999986 66888899999999999999999999999999999999974
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.89 E-value=1.3e-05 Score=56.83 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=42.6
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888888888888888888888888887776543
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.88 E-value=0.0001 Score=63.48 Aligned_cols=94 Identities=11% Similarity=-0.080 Sum_probs=76.0
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
....+..++..+...|++++|...+++.. ..| ...+|..+..++...|++++|+..+++++.+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35667778888888899999999998874 222 2357888999999999999999999999999999998888888
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 043580 632 NIYA-------DAGRWEDAFSIRKEM 650 (665)
Q Consensus 632 ~~~~-------~~g~~~~A~~~~~~~ 650 (665)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888665555544
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.87 E-value=4.3e-05 Score=54.99 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|.+.++++.|...+++++.++|+++..+...|.+|...|++++|.+.++++++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4678889999999999999999999999999999999999999999999999987654
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.0023 Score=60.36 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=53.4
Q ss_pred Hhccc-ChHHHHHHHHHHhHhhcCCC--C--ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCC----CH-HHHHHH
Q 043580 531 TCCHA-GLVDLGERYFKSMKSVYNVE--P--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKA----DV-VIWGTL 596 (665)
Q Consensus 531 ~~~~~-~~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~-~~~~~l 596 (665)
.|... |+++.|++.|++..+.+.-. + -..++..++..+.+.|++++|.++|++.. ..+ +. ..+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 45555 66666666666665432111 1 13345556677777777777777777653 111 11 122334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
+-++...||...|...+++..+.+|.-..+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 445666778888888888887777765444
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00016 Score=55.45 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=59.0
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHh
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRI 602 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~ 602 (665)
..+...+...|++++|...++.+.+ ..| +...+..++.++...|++++|.+.+++.. .. .+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3444555556666777777666653 244 34556666666667777777777776654 22 234566666677777
Q ss_pred cCCHHHHHHHHHHHhccCC
Q 043580 603 HGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p 621 (665)
.|+++.|...++++.+..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777777665
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.80 E-value=0.0005 Score=56.07 Aligned_cols=97 Identities=8% Similarity=-0.081 Sum_probs=77.0
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
..-.+...+...|++++|.++|+.+. .+.| +..-|..|.-++-..|++++|+..+..+. .+.++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44455556677899999999998887 4578 77788888888888999999999988875 334677888888889
Q ss_pred HhcCCHHHHHHHHHHHhccCCCC
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
...|+.+.|...|+.++...-..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999888766433
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.044 Score=52.43 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=74.7
Q ss_pred hcccCh-HHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH----hhh---cCChHHH---HHHHHhCCCCC----CHHHHHH
Q 043580 532 CCHAGL-VDLGERYFKSMKSVYNVEP-DLKHYGCMVDL----LGR---AGQLEDA---EEVIRSMPMKA----DVVIWGT 595 (665)
Q Consensus 532 ~~~~~~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~----~~~---~g~~~~A---~~~~~~~~~~~----~~~~~~~ 595 (665)
+.+.|. -++|+++++.+. .+.| |..+-|.+... |.. ...+.+- ...+++....| +...-|.
T Consensus 389 lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 334444 678888888887 4566 55444432221 111 1111111 12233333332 4456677
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 596 LLAA--SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 596 l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
|..| +...|++.++.-.-..+.+..| ++.++..+|.++....+|+||.+++.++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7766 5688999999999999999999 7888999999999999999999998765
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.74 E-value=0.0002 Score=66.57 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHh---HhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------CC-CCH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSM---KSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------MK-ADV 590 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-~~~ 590 (665)
..|..|...|.-.|+++.|+...+.= .+.||-.. ....+..+.+++.-.|+++.|.+.++... .+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45667777777789999988765542 23334444 45678889999999999999999987753 11 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc----cC--CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAG----LQ--PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
-+-.+|...|.-..++++|+.+..+=+. ++ .....++..|+.+|...|..++|+.+.+..++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4556777888888889999988876542 22 344566888999999999999999888776653
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=4.6e-05 Score=53.25 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=48.4
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
++..+...|++++|+..++++. ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888999998888876 335 567788888888899999999999999999998864
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=7.6e-05 Score=55.36 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD-VVIWGTLLAASRIHGNVEVGERAAK 614 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (665)
|+++.|+.+++++.+...-.|+...+..++.+|.+.|++++|..++++....|. ......++.++.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 445555555555543301011222333345555555555555555544221121 1222333444555555555555554
Q ss_pred H
Q 043580 615 S 615 (665)
Q Consensus 615 ~ 615 (665)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.1e-05 Score=43.54 Aligned_cols=31 Identities=45% Similarity=0.798 Sum_probs=25.0
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCC
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGV 151 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 151 (665)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.00093 Score=57.71 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHh
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN--SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMV 565 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 565 (665)
.+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+ ..| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 466666677777888888888887776432222 34666777777777888888887777774 356 555666666
Q ss_pred hHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 566 DLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
.+|...|+...+..-++... ..+++|...++++++.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 67766666555543333221 22678888999999988887 333444444444
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.70 E-value=0.00027 Score=64.78 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=38.6
Q ss_pred hcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChh
Q 043580 570 RAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWE 641 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 641 (665)
+.|++++|...|+.+. ..|+ +..+..++.+|...|+++.|...|+++++..|+++ .++..++.++...|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 3344444444444443 1121 23344444555555555555555555554444432 22334445555555555
Q ss_pred HHHHHHHHHHh
Q 043580 642 DAFSIRKEMRD 652 (665)
Q Consensus 642 ~A~~~~~~~~~ 652 (665)
+|+++|+++++
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.00083 Score=62.98 Aligned_cols=134 Identities=11% Similarity=0.159 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-hcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST-CCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (665)
+|..++....+.+..+.|..+|++.++.+ ..+...|...+.. +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56677777777777888888888887543 3345555555555 33356677788898888865 22366777788888
Q ss_pred hhhcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 568 LGRAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
+.+.|+.+.|..+|++.... | ....|...+.--.+.|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88888899999998887633 3 3358888888888899999999999988888887554
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.0038 Score=56.97 Aligned_cols=174 Identities=11% Similarity=0.027 Sum_probs=107.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCcch----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc-
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSVSP----WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH- 534 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 534 (665)
....+...|++++|.+.|+.+....|+... .-.++.++.+.++++.|...+++..+....-....+.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 444556678888888888888776444321 234556777888888888888888875322222233333333221
Q ss_pred -c---------------Ch---HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 043580 535 -A---------------GL---VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT 595 (665)
Q Consensus 535 -~---------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 595 (665)
. .| ...|++.|+.+.+. -|+ +.-..+|...+..+..+-.... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 22344455555433 343 2333444443333321111111 13
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHHHHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+..-|.+.|.+.-|+.-++.+++..|+.+.. ...++.+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4556889999999999999999988887654 678889999999999999988665
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.8e-05 Score=43.31 Aligned_cols=31 Identities=32% Similarity=0.675 Sum_probs=24.8
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCC
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGI 283 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 283 (665)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 180
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.67 E-value=2.4e-05 Score=45.62 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=31.5
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
+++++++++|+++.++..||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999964
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=6.1e-05 Score=53.26 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=24.5
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
.|++++|+++|+++... .| +...+..++.+|.+.|++++|.++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555533 44 44445555555555555555555555554
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.64 E-value=0.00052 Score=53.97 Aligned_cols=90 Identities=18% Similarity=0.071 Sum_probs=62.7
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMK----A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS---HGPSRVLLSNIY 634 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 634 (665)
.+..++-..|+.++|+.++++.... + ....+..+...+...|++++|..++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455666777777777777776521 1 1345556777777888888888888888877777 556666777788
Q ss_pred HhcCChhHHHHHHHHHHh
Q 043580 635 ADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~ 652 (665)
...|+.++|.+.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888877765543
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=9.4e-05 Score=52.45 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=49.6
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG-NVEVGERAAKSLAGLQP 621 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 621 (665)
++..|..++..+...|++++|+..|++.. .+.+...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34567777778888888888888887765 3335667778888888888 68888888888888877
No 184
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.62 E-value=0.082 Score=51.88 Aligned_cols=210 Identities=11% Similarity=0.087 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHH
Q 043580 435 LKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC---GSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
.+++..+++..++.-...+..+|..+.+.--.. ...+.....++++... ..-..+|..++..-.+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 344555555555433333444444333221111 1355566677776665 23345788889988999999999999
Q ss_pred HHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-
Q 043580 510 YSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK- 587 (665)
Q Consensus 510 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 587 (665)
|.+..+.+..+ +....++++.-+| .++.+-|.++|+.-.+.+|- ++..-...++-+...++-..|..+|++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988777 6667777777666 57889999999998876333 3344456677888899999999999998733
Q ss_pred --C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHhcCChhHHHHHH
Q 043580 588 --A--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG----PSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 588 --~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
| ...+|..++.--..-||...+..+-++.....|.+. .....+.+-|.-++.+..-..-+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 2 458999999999999999999999999877766221 12345555666666654444333
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.61 E-value=0.00027 Score=67.90 Aligned_cols=63 Identities=6% Similarity=-0.039 Sum_probs=29.8
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV----VIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
+...++.+..+|...|++++|+..+++.. ..|+. ..|.++..+|...|++++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444455555555555555555554432 33332 12444555555555555555555555544
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.0083 Score=49.75 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=93.3
Q ss_pred CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CHHH
Q 043580 518 IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DVVI 592 (665)
Q Consensus 518 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~ 592 (665)
..|....-..+..++...|++.+|...|++... |+-- |....-.+.++....+++..|...++++- .+| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 356666666777788888888888888888775 5544 67777777888888888888888887764 222 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
-..+...+...|.++.|+..++.++...|+... ....+..+.++|+.++|..-+..+-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a-r~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQA-RIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH-HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444666777888888888888888887776443 55556677888887777766665544
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0012 Score=56.85 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=44.3
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASR 601 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 601 (665)
..+...+...|++++|...|++.... ...| ...++..+..+|...|++++|+..++++. ..| ....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33333344444444444444444422 1011 12234444444444555555555444443 111 2233333333333
Q ss_pred -------hcCCHH-------HHHHHHHHHhccCCCCC
Q 043580 602 -------IHGNVE-------VGERAAKSLAGLQPSHG 624 (665)
Q Consensus 602 -------~~g~~~-------~A~~~~~~~~~~~p~~~ 624 (665)
..|+++ +|...++++++.+|.+.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 455544 66667777777787654
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0012 Score=49.75 Aligned_cols=80 Identities=9% Similarity=0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhHHcCC-CCCHhhHHHHHHHHhccC--------ChHHHHHHHHHHHHHhcCCchhHH
Q 043580 123 YTSMIMGFAQNDCWREALEVFRDMRILGV-IPNEVTLASVISSSVHLG--------GIWECRMLHGLVIKLMIDGFVIIS 193 (665)
Q Consensus 123 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 193 (665)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ..-....+++.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999987654 234567788999999999999999
Q ss_pred HHHHHHHhc
Q 043580 194 TNLLNMYCV 202 (665)
Q Consensus 194 ~~l~~~~~~ 202 (665)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887654
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.088 Score=50.06 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=78.7
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH 603 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 603 (665)
+.+..+.-|...|+...|.++-.+. ++ |+...|...+.+|+..++|++-.++... +.+|.-|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566667778877777665554 33 7888888889999999999888876654 33557788888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
|+..+|..+..++ | +..-+..|.+.|++.+|.+.--
T Consensus 251 ~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 9988888888771 1 1344567888888888876643
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.52 E-value=0.025 Score=54.04 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCCC-----CcchHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDRTT-----SVSPWNAIICGLAM---HGDANLTLKIYSDLEKRNIKLNSITFIGVLS 530 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 530 (665)
.++-.|....+++...++.+.+...+. ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344456666777777777777666511 11112223344445 6778888888877555555677777777665
Q ss_pred Hhcc---------cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChH----HHHHHH---HhCC-----C--C
Q 043580 531 TCCH---------AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLE----DAEEVI---RSMP-----M--K 587 (665)
Q Consensus 531 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~-----~--~ 587 (665)
.|-. ....++|+..|.+.- .+.|+...--.++.++.-.|... +..++- ..+. . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 234678888888765 45676544333444444444322 222222 1111 1 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+-..+.+++.++.-.||+++|.+.++++..+.|..-.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 34555678999999999999999999999999876554
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.022 Score=53.64 Aligned_cols=217 Identities=11% Similarity=-0.046 Sum_probs=119.3
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcch-------------HHHH
Q 043580 427 CAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSP-------------WNAI 493 (665)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~l 493 (665)
.++...++.++|..+-..+++..-. +....-.-..++.-.++.+.|...|++.....|+-.. +..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 3444556666666655555543211 1111111122334456666777777666665443221 1122
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKR---NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..-..+.|++..|.+.|.+.+.. +..|+...|........+.|+..+|+.-.+... .+.| -...|..-.+++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 23445678888888888887763 234455567777777778888888888777776 4566 3556666677777
Q ss_pred hcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHhccCCCCCch----
Q 043580 570 RAGQLEDAEEVIRSMP-MKA---DVVIWGTLLAASRIHG---------------NVEVGERAAKSLAGLQPSHGPS---- 626 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~~~~~---- 626 (665)
..++|++|++-+++.. ... ...++.....++.++. +.+.-...-+.++...|+-...
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~e 412 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKE 412 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHH
Confidence 7888888888887754 111 2233333332332211 1122222223334445543322
Q ss_pred ----HHHHHHHHHhcCChhHHHHHH
Q 043580 627 ----RVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 627 ----~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+.-.+.+|...+++.++.+..
T Consensus 413 aE~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 413 AEAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhcc
Confidence 445677777777777776554
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.12 Score=48.67 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=29.6
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASR-IHGNVEVGERAAKSLA 617 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 617 (665)
.++| +.+....+..+-...|++..|..--+... ..|....|.-+...-. ..||-.++...+-+++
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 3344 34444444555555555555544443332 3344444444444322 2355555555555554
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.41 E-value=0.0025 Score=62.19 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=88.5
Q ss_pred CCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcc
Q 043580 413 AGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN--SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVS 488 (665)
Q Consensus 413 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 488 (665)
.+.+.+...+..+++.+....+.+.+..++...+.. ....-+.+..++++.|...|..+.+..+++.=... -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667777888888888888888888888777654 22233344457888888888888888877665554 57777
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
+++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777777666667766666666554
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.40 E-value=0.00023 Score=44.71 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
.+|..+..+|...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999998888764
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0026 Score=58.43 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCCC-CC----CHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMPM-KA----DVVIWG 594 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~ 594 (665)
.|...+....+.|++++|+..|+.+.+. .|+ +..+..++.+|...|++++|...|+.+.. -| .+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4555554446678999999999999865 553 35777889999999999999999988862 13 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.++.++...|+.++|...++++++..|++...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 77888889999999999999999999987753
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0028 Score=47.80 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=62.1
Q ss_pred eHHHHHHHHhhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccc--------chhhHHHHHHHHHHhCCCCchhH
Q 043580 254 SWGTMIDGYLQVERLSEALTMYRAMLCDGI-APNDVMIVDLISACGRAM--------AFGEGLQIHSIIVKAGFDCYDFI 324 (665)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 324 (665)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 999999999999887643 23456677778887777777777
Q ss_pred HHHHHHHHHh
Q 043580 325 QATIIHFYAA 334 (665)
Q Consensus 325 ~~~l~~~~~~ 334 (665)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7776665544
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.34 E-value=0.00027 Score=51.56 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGL----QPSH---GPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+++.+..+|...|++++|+..+++++++ .+++ ..++..+|.+|...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888888888888888643 2222 34477899999999999999999998865
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.0062 Score=57.45 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=64.7
Q ss_pred HHHHHhhHhhhc-CChHHHHHHHHhCC------CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-----
Q 043580 560 HYGCMVDLLGRA-GQLEDAEEVIRSMP------MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP----- 625 (665)
Q Consensus 560 ~~~~l~~~~~~~-g~~~~A~~~~~~~~------~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----- 625 (665)
++..+...|... |++++|++.|+++. ..+ -...+..+...+.+.|++++|...+++.....-+++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444556677777 88999998888875 111 2345677788899999999999999999764433221
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 626 --SRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 626 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+...+-++...|+...|.+.+++..+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2344556678889999999999988654
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.32 E-value=0.012 Score=52.21 Aligned_cols=167 Identities=12% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhc
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSV----SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCC 533 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 533 (665)
....+...|++++|...|+.+...-|+. .+...++.++.+.|+++.|...+++.++. .|+. ..+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence 3445566777888888887777663332 24556667777888888888888887765 2322 22222222222
Q ss_pred c-------------cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043580 534 H-------------AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAAS 600 (665)
Q Consensus 534 ~-------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 600 (665)
. .+...+|...|+.+.+ -|-.+....+|...+..+...-. ..-..+..-|
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~la-~~e~~ia~~Y 151 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRLA-EHELYIARFY 151 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1 1223344444444443 33334444444444443321100 1112345668
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHH
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~ 645 (665)
.+.|.+..|..-++.+++..|+.+.. ...++.+|.+.|..+.|.+
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999999999988654 6778888999999885543
No 200
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.29 E-value=0.002 Score=49.65 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=66.8
Q ss_pred hHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHhcCC
Q 043580 566 DLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP----SRVLLSNIYADAGR 639 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~ 639 (665)
.++...|+.+.|++.|.+.. .+..+..||.-..++.-.|+.++|..-+++++++.-+... .+..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35567788888888887765 2336677888888888888888888888888877644432 26677778888888
Q ss_pred hhHHHHHHHHHHhCCC
Q 043580 640 WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 640 ~~~A~~~~~~~~~~~~ 655 (665)
.+.|+.-|+.+-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888877765
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.00071 Score=48.53 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=51.1
Q ss_pred hhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
...|.+.+++++|.++++++. ..| ++..|.....++...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888876 334 66777778888889999999999999999999987775443
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.28 E-value=0.023 Score=56.60 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcC
Q 043580 288 VMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNG 367 (665)
Q Consensus 288 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (665)
.+...+..-+.+...+..|.++|..|-.. ..++.+....+++++|..+-++..+--...|-...+-++...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 44444444455666677777777665432 345666666777777776666655544444555555555555
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 043580 368 MIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDA 413 (665)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 413 (665)
++++|.+.| .+.|+..+|..+++++...
T Consensus 819 rFeEAqkAf------------------hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAF------------------HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHH------------------HHhcchHHHHHHHHHhhhh
Confidence 555555444 3567777777777776543
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0043 Score=60.56 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=94.2
Q ss_pred HHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 043580 345 FELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN 418 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 418 (665)
|......+......+++.+....+++.+..++-..... .+.+..+++..|...|..+.++.+++.=..-|+-||
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 33444455566667777777777788888888777643 345667899999999999999999999889999999
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC 467 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (665)
..+++.++..+.+.|++..|.++...|...+...++.++..-+..+.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887766666665555444444444
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0035 Score=58.81 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh-cCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR-AGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
.+|..++....+.+..+.|..+|.++.+. -..+..+|...+..-.. .++.+.|..+|+... ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888889999999999999843 12256666666666444 567777999999986 44678889999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+.+.|+.+.|..+|++++..-|... ..|...+..=.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877665 45788888888899999999999998774
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.26 E-value=0.0051 Score=49.37 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=68.2
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIY 634 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~ 634 (665)
.-+....+.|++++|.+.|+.+... | ....-..++.++.+.|+++.|...+++.++++|.++.+ ++..|.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3345556789999999999888622 2 34566778899999999999999999999999998865 55666666
Q ss_pred HhcCC---------------hhHHHHHHHHHHh
Q 043580 635 ADAGR---------------WEDAFSIRKEMRD 652 (665)
Q Consensus 635 ~~~g~---------------~~~A~~~~~~~~~ 652 (665)
..+.. ..+|...|+++++
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 66655 6677777777755
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.25 E-value=0.2 Score=48.05 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCc---chhhHHHHHHHhcCChhhHHHhhhcCCCC--
Q 043580 44 QIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDP---VACNIMISGYIRNDRLNDAREVFDKTPIK-- 118 (665)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-- 118 (665)
++-+.+... |.+...|..|+.-|.-.|..++..++++++..|-| ..|...+++=....++...+.+|.+....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444443332 67888999999999999999999999999988754 36666666666667787888887765432
Q ss_pred CcccHHHHHHHH
Q 043580 119 CCVSYTSMIMGF 130 (665)
Q Consensus 119 ~~~~~~~ll~~~ 130 (665)
+...|..-+.-.
T Consensus 108 ~ldLW~lYl~YI 119 (660)
T COG5107 108 NLDLWMLYLEYI 119 (660)
T ss_pred cHhHHHHHHHHH
Confidence 344455554433
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.32 Score=49.99 Aligned_cols=338 Identities=12% Similarity=0.103 Sum_probs=183.5
Q ss_pred CCCCCCHHHHHH-----HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh--HHHHHHHHhcc-C--
Q 043580 281 DGIAPNDVMIVD-----LISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI--NLARLQFELGI-K-- 350 (665)
Q Consensus 281 ~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~-~-- 350 (665)
-|++.+..-|.. +|.-+...+.+..|.++-..+...-... ..++.....-+.+..+. +.+.+.++..+ .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 466666655543 3455566677777777766654332222 56666666666665432 22233332211 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH
Q 043580 351 DHIASWNALIAGFIRNGMIEDARQLFNNMQKR--------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
-...+|....+.-...|+.+-|..+++.=... +..-+...+.-....|+++-...++-.+..+ .+...|
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 23345666777777788888888877653322 3334455556666677777776666655542 111111
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHchhC---CCCcchHHHHHHHHH
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEV-FYHIRDR---TTSVSPWNAIICGLA 498 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~---~~~~~~~~~l~~~~~ 498 (665)
...+ .+...|..++..+.+..-. ..+-+.|-...+...+-.+ ++..... .+-.........++.
T Consensus 582 ~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 582 FMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred HHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 1111 1222333333333321100 1111222222222211111 1110000 111222233333444
Q ss_pred hcCC----------hHHHHHHHHHHHH-cCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH
Q 043580 499 MHGD----------ANLTLKIYSDLEK-RNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL 567 (665)
Q Consensus 499 ~~~~----------~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (665)
+... ..+-+.+.+.+.. .|......+.+-.+.-+...|+..+|.++-.+.+ -||...|-.-+.+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHH
Confidence 3332 1112222222222 1223334455556666777888888888877765 5788888888899
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 568 LGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+...++|++-+++-+.... +.-|.-++.+|.+.|+.++|..++-+.-++. -...+|.+.|++.+|.+.-
T Consensus 725 La~~~kweeLekfAkskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 9999999988888777653 4557778889999999999998887664433 4567888999999988765
Q ss_pred HHH
Q 043580 648 KEM 650 (665)
Q Consensus 648 ~~~ 650 (665)
-+-
T Consensus 794 ~~~ 796 (829)
T KOG2280|consen 794 AEH 796 (829)
T ss_pred HHh
Confidence 443
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0072 Score=47.63 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLN--SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+|+.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888888775554 23566677778888888888888888776421111 222223344566
Q ss_pred hhcCChHHHHHHHHhC
Q 043580 569 GRAGQLEDAEEVIRSM 584 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~ 584 (665)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6778888888776543
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.23 E-value=0.19 Score=47.33 Aligned_cols=285 Identities=14% Similarity=0.154 Sum_probs=178.1
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhhcC---CCCcchHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCChhH--HHHH
Q 043580 355 SWNALIAGFIR--NGMIEDARQLFNNMQ---KRDVYSWSAMISG--YAQNEQPNMALELFHGMVDAGVKPNEIT--MVSV 425 (665)
Q Consensus 355 ~~~~l~~~~~~--~~~~~~a~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l 425 (665)
.|..|-.+++- .|+-..|.++-.+.. ..|....--++.+ -.-.|+++.|.+-|+.|.. .|.... +..|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence 45566655543 466666766665443 2344444444433 3346888999999988876 333322 3333
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcc--hHHHHHHHHH--
Q 043580 426 FCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVS--PWNAIICGLA-- 498 (665)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~--~~~~l~~~~~-- 498 (665)
.-.--+.|+.+.|.++-+..-..- +.-.......++..+..|+++.|+++++.-... .++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 444456788888887777765432 122245567788888889999998888766554 33332 2333443322
Q ss_pred -hcCChHHHHHHHHHHHHcCCCCChHH-HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 499 -MHGDANLTLKIYSDLEKRNIKLNSIT-FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 499 -~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
-.-++..|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+. .|.+.++... .+.+.|+.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt-- 310 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT-- 310 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--
Confidence 23455666665555554 4666543 334456788889999999999988744 6665554332 33455553
Q ss_pred HHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CChhHHHHHHHHH
Q 043580 577 AEEVIRSMP----MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA-GRWEDAFSIRKEM 650 (665)
Q Consensus 577 A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 650 (665)
+..-+++.. .+| +..+...+..+....|++..|..-.+.+....|.... |..|+.+-... |+-.+++..+-+.
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHHHHH
Confidence 333233221 334 5566777788888899999999999999999998766 66777775544 8988888888666
Q ss_pred HhC
Q 043580 651 RDC 653 (665)
Q Consensus 651 ~~~ 653 (665)
...
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 544
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0032 Score=59.26 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=80.6
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
.++..++-+|.+.+++.+|+....+.. .+++...+..-..++...|+++.|...|+++++++|++-.+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 467778889999999999999998876 456788888889999999999999999999999999999988888887766
Q ss_pred cCChh-HHHHHHHHHHhC
Q 043580 637 AGRWE-DAFSIRKEMRDC 653 (665)
Q Consensus 637 ~g~~~-~A~~~~~~~~~~ 653 (665)
..++. ...++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 66544 448889988663
No 211
>PRK11906 transcriptional regulator; Provisional
Probab=97.21 E-value=0.0052 Score=59.50 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHc-CCCCC-hHHHHHHHHHhccc---------ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 502 DANLTLKIYSDLEKR-NIKLN-SITFIGVLSTCCHA---------GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 502 ~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..+.|+.+|.+.... .+.|+ ...|..+..++... .+..+|.++-++.. .+.| |+.....+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 456788888888822 23554 44566665555432 23445666666665 5677 7888888888888
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH--HHHHHHHhcCChhHHHH
Q 043580 570 RAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV--LLSNIYADAGRWEDAFS 645 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 645 (665)
-.++++.|...|++.. ..| ...+|......+...|+.++|.+.++++++++|.-..+-. ..+..|+..+ .++|++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 8888999999998876 445 4677777778888889999999999999999997665433 2333455544 566777
Q ss_pred HHHH
Q 043580 646 IRKE 649 (665)
Q Consensus 646 ~~~~ 649 (665)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6643
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0013 Score=61.77 Aligned_cols=67 Identities=9% Similarity=-0.037 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 590 VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
...+..+..++.+.+++..|+....++++++|++...++.-|.+|...|+++.|+..|+++++....
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 3466788889999999999999999999999999999999999999999999999999999886543
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.17 E-value=0.026 Score=43.90 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=88.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
..-.|..++..++..+.... .+..-+|.++--....-+-+-..+.++.+-+-|.+.|- .....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34567888888888887763 34455555555555555556666677766554444441 112234555555443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
.....+..+..+...|.-++-.++++.+...+..+|.....++.+|.+.|+..+|.++++++-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444556777889999999999999988767777888999999999999999999999999999984
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.0034 Score=53.91 Aligned_cols=89 Identities=11% Similarity=-0.060 Sum_probs=69.7
Q ss_pred CCcccHHHHHHHHh-----hcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccC----------------ChHHHHH
Q 043580 118 KCCVSYTSMIMGFA-----QNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLG----------------GIWECRM 176 (665)
Q Consensus 118 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----------------~~~~a~~ 176 (665)
.+-.+|..++..|. +.|..+=....+..|.+-|+.-|..+|+.|++.+-+.. ..+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 34445555555554 34677778888999999999999999999999886422 3456888
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 177 LHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
++++|...|+-||..++..|++++++.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999999877663
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.02 Score=52.10 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=81.1
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc---CChHHHHHHHHhCC-CCC-CHHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA---GQLEDAEEVIRSMP-MKA-DVVI 592 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~-~~~-~~~~ 592 (665)
+-|...|-.|...|...|+.+.|...|....+ +.| |+..+..+..++..+ ....++..+++++. ..| +...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 55778888888999999999999988888874 466 677777777776543 25677888888876 334 5666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
..-|...+...|++.+|...++.+++..|.+.+-
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 6677777889999999999999998888877663
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.45 Score=48.38 Aligned_cols=235 Identities=12% Similarity=0.031 Sum_probs=135.8
Q ss_pred CCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-hcC--------CchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcc
Q 043580 152 IPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-MID--------GFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIV 222 (665)
Q Consensus 152 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (665)
.|.+..|..+.......-+++.|+..|-..... |++ .+...-. ...-+--|++++|++++-++..+|
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh--
Confidence 466667776666655555555555444322111 110 0111111 122233588888888888888777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043580 223 SWNVMLNGFAKAGLVELARELFERIPSK-----DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISAC 297 (665)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (665)
..+..+.+.|++-.+.++++.-... -...|+.+...++....|++|.+.|..-.. ....+.++
T Consensus 765 ---LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 765 ---LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ---hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 4456667778888888877764432 134677788888877788888877765421 11234444
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 043580 298 GRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFN 377 (665)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 377 (665)
.+..++++-..+.. .++.+....-.+.+++.+.|.-++|.+.+-+--.|. ..+..|...+++.+|.++-+
T Consensus 833 y~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 833 YRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44444444433322 345667777788888888888888877664433332 34556777777888877777
Q ss_pred hcCCCCcchHH--------------HHHHHHHhCCCchHHHHHHHHHHH
Q 043580 378 NMQKRDVYSWS--------------AMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 378 ~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
...-|.+.+.- .-|..+.+.|++-.|-+++.+|.+
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 66544332211 123334455665556666655543
No 217
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.03 E-value=0.058 Score=49.30 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcccchhhHHHHHHHH
Q 043580 257 TMIDGYLQVERLSEALTMYRAMLCD--GIAPNDVMIVDLISACGRAMAFGEGLQIHSII 313 (665)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 313 (665)
.+..-|.+.|.+..|+.-++.+.++ +.+........+..++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445566777777777777777654 23334445555666666666666666555443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.02 E-value=0.0017 Score=60.58 Aligned_cols=245 Identities=11% Similarity=0.056 Sum_probs=134.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCChh----HHHHHHHHHHccCcHHHHHHHHHHHH--H--cCCCC-ChhHHHHHHH
Q 043580 392 SGYAQNEQPNMALELFHGMVDAGVKPNEI----TMVSVFCAIASSGTLKEGRWAHEYVL--N--NSITL-NDNLSAAIID 462 (665)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~l~~ 462 (665)
.-+|+.|+....+.+|+..++.| ..|.. .|..+-++|...+++++|.++...=+ . .|-.. .......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34788888888899998888877 33333 35555666677777777777654421 1 11111 1112223444
Q ss_pred HHHhcCCHHHHHHHHHHchhC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 463 MYAKCGSINTAFEVFYHIRDR-------TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
.+--.|.+++|.-...+-... ......+..+...|...|+.-... .-.+.|-.|+.. .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev-----------~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEV-----------T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHH-----------H
Confidence 444455555554332221110 111122223333333222210000 000001111110 0
Q ss_pred ChHHHHHHHHHHhHhh---cCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhC-C------CC-CCHHHHHHHHHHHHhc
Q 043580 536 GLVDLGERYFKSMKSV---YNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSM-P------MK-ADVVIWGTLLAASRIH 603 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~-~~~~~~~~l~~~~~~~ 603 (665)
..++.|.++|.+-.+. .|-.. --..|..|.+.|.-.|+++.|+..-+.= . .+ .....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 1223444444432211 01111 2456778888888899999998765432 1 11 3456778899999999
Q ss_pred CCHHHHHHHHHHHh----ccCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 604 GNVEVGERAAKSLA----GLQPS--HGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 604 g~~~~A~~~~~~~~----~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|+++.|.+.|++.+ ++.-. .....+.|++.|.-..++++|+.+..+=+.
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 33333 345588999999999999999999876543
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.0042 Score=55.57 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=42.4
Q ss_pred hcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChh
Q 043580 570 RAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWE 641 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 641 (665)
+.|++.+|...|.....+ | .+..+..|+.+++..|+++.|...|..+.+-.|+++ ..++.|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555544311 1 223333455555555555555555555555444433 33555555566666666
Q ss_pred HHHHHHHHHHh
Q 043580 642 DAFSIRKEMRD 652 (665)
Q Consensus 642 ~A~~~~~~~~~ 652 (665)
+|..+|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 220
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.16 Score=42.41 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=74.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHH
Q 043580 451 TLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LNSITFIG 527 (665)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ 527 (665)
.|+......|...+.+.|+..+|...|++.... -.|......+..+....+++..|..+++++.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 344444445556666666666666666655544 334445555556666666666666666666654310 02334455
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
+...+...|.+..|...|+...+ .-|++..-......+.+.|+.++|..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 56666677777777777777763 35655555555566667776666554433
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.03 Score=49.40 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=97.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC----CCcccHHHH-----
Q 043580 157 TLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----RNIVSWNVM----- 227 (665)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l----- 227 (665)
..+.+++++.-.+.+.....++..+++...+.++.....|.+.-.+.||.+.|...|+.+.+ -|....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567777778888888888899998888888888888899998999999999999987664 222233332
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043580 228 LNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDL 293 (665)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 293 (665)
...|.-++++.+|...+.+++. .|+..-|.-.-+..-.|+...|++.++.|+. +.|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 2335566788888888887775 3455556555556667889999999999987 45554444433
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.94 E-value=0.014 Score=51.95 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHhccCCCCCch-----------------HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 605 NVEVGERAAKSLAGLQPSHGPS-----------------RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+|...++.++...|+++-. -..++..|.+.|.+..|..-++.+++
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3567777777777777777544 24567789999999999999999876
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.93 E-value=0.011 Score=50.87 Aligned_cols=98 Identities=10% Similarity=0.210 Sum_probs=75.1
Q ss_pred HHHHHchhCCCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc--------------
Q 043580 475 EVFYHIRDRTTSVSPWNAIICGLAM-----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA-------------- 535 (665)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------- 535 (665)
..|+.......+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 3444443334566667777776654 467777788889999999999999999999877652
Q ss_pred --ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCC
Q 043580 536 --GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 536 --~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (665)
.+-+-|++++++|... |+-||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2457789999999988 999999999999999876653
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.12 Score=45.66 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----CCCCChhHHHHH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVY----NVEPDLKHYGCM 564 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 564 (665)
+.+.++..+...|.+.-.+..+++.++...+.++.....+.+.-.+.||.+.|..+|++..+.. ++.-+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556777777788888899999999987656677888888888899999999999999877542 222223333344
Q ss_pred hhHhhhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
...|.-++++.+|...+.++... .++...|+-.-+..-.|+...|++.++.+++..|.....-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 55566778888888888887632 34455555555666778999999999999999998776543
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.0091 Score=53.47 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CC-CCHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MK-ADVVIWGTLL 597 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~~l~ 597 (665)
.|+.-+. +.+.|++..|...|....+.+--.+ ....+-.|.+++...|++++|..+|..+. .. .-++.+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4655554 4567789999999999987633233 45567789999999999999999988875 22 3568889999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.+..+.|+.++|...++++++-.|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999998775
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.77 E-value=0.0012 Score=48.14 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=42.5
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP-----MK---AD-VVIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
..+++.+..+|...|++++|++.+++.. .. |+ ..++..+..++...|++++|+.++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456677777777777777777776654 11 22 456777778888888888888888887654
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.74 E-value=0.092 Score=51.19 Aligned_cols=143 Identities=10% Similarity=0.031 Sum_probs=90.5
Q ss_pred HHHHHHHHHHch---hCCCC-cchHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 470 INTAFEVFYHIR---DRTTS-VSPWNAIICGLAM---------HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
.+.|..+|.+.. ...|+ ...|..+..++.. ..+..+|.++.++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456777888877 43343 3345555444432 123456677777777765 567777777777777777
Q ss_pred hHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 043580 537 LVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRS-MPMKADV---VIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 611 (665)
+.+.|...|++.. .+.| ...+|......+.-.|+.++|.+.+++ +...|.. ....-.+..|+.. -.+.|+.
T Consensus 353 ~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 7888888888887 5678 466676777777778888888888888 4455543 2223333344443 3566666
Q ss_pred HHHHHh
Q 043580 612 AAKSLA 617 (665)
Q Consensus 612 ~~~~~~ 617 (665)
+|-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 665443
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.57 Score=44.65 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG 572 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (665)
.+.-+...|+...|.++-++.. -|+..-|...+.+++..++|++-.++-.. .-++..|...++++.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 3344444444444444433321 34555555555555555555544443221 112344455555555555
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 573 QLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
+..+|..++.++.. ..-+..|.+.|++.+|.+..
T Consensus 252 ~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHHH
Confidence 55555555555321 22334445555555554443
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.72 E-value=0.47 Score=43.55 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=40.4
Q ss_pred hhhcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH
Q 043580 568 LGRAGQLEDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 644 (665)
+...++.++|...+.+.. ..+ ....+..+...+...++++.|...+.++....|.....+..++..+...|+.+++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 334455555555554443 111 23444444445555555555555555555555553333444444444444455555
Q ss_pred HHHHHHHh
Q 043580 645 SIRKEMRD 652 (665)
Q Consensus 645 ~~~~~~~~ 652 (665)
..+.+...
T Consensus 257 ~~~~~~~~ 264 (291)
T COG0457 257 EALEKALE 264 (291)
T ss_pred HHHHHHHH
Confidence 55544443
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.91 Score=46.85 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=79.2
Q ss_pred HHcCCCCCHhhHHH-----HHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC---HHHHHHHHhhccC
Q 043580 147 RILGVIPNEVTLAS-----VISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS---LVEARSLFDEMKE 218 (665)
Q Consensus 147 ~~~g~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~ 218 (665)
..-|+..+..-|.. +|.-+...+.+..|.++-..+-..-... ..++......+.+..+ .+.+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34566666655543 4445556666667766665553322222 4555555555555432 2223333333333
Q ss_pred --CCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CeeeHHHHHHHHhhcCChhHHHHHHHHHHH
Q 043580 219 --RNIVSWNVMLNGFAKAGLVELARELFERIPSK--------DVVSWGTMIDGYLQVERLSEALTMYRAMLC 280 (665)
Q Consensus 219 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 280 (665)
....+|..+.+.....|+.+-|..+++.=+.. +...+...+.-..+.|+.+-...++-.+..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34567888888888888888888888754431 444566677777788888888777777654
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.59 E-value=0.15 Score=49.80 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhccCCCCCch
Q 043580 607 EVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~ 626 (665)
..|.+.+.++++.+|-.+.+
T Consensus 363 ~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 363 MNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHHHHhCCCCchh
Confidence 34678888999988877764
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.59 E-value=0.091 Score=53.36 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------HHHHHHHHHhcc----cChHHHHHHHHHHhHhhcCCCCChh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS------ITFIGVLSTCCH----AGLVDLGERYFKSMKSVYNVEPDLK 559 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 559 (665)
+..++....-.||-+.+++.+.+..+.+---.+ -.|..++..++. ..+.+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 444444445556666666666555442211111 123333333332 45678889999998855 67655
Q ss_pred HHHH-HhhHhhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch-HHHHH
Q 043580 560 HYGC-MVDLLGRAGQLEDAEEVIRSMPM-K-----ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS-RVLLS 631 (665)
Q Consensus 560 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~l~ 631 (665)
.|.. -.+.+...|+.++|++.++++.. + .....+-.+.+++....++++|...+.++.+.+.-+... .+..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5543 45666778999999999987652 1 233455667788888999999999999998876665444 44666
Q ss_pred HHHHhcCCh-------hHHHHHHHHHHh
Q 043580 632 NIYADAGRW-------EDAFSIRKEMRD 652 (665)
Q Consensus 632 ~~~~~~g~~-------~~A~~~~~~~~~ 652 (665)
-++...|+. ++|.++++++-.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 678888988 888888888755
No 233
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.56 E-value=0.13 Score=51.55 Aligned_cols=223 Identities=13% Similarity=0.044 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhccCChhHHH--HHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHh
Q 043580 24 LALVSALRYCSAHIAVSQGQ--QIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIR 101 (665)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 101 (665)
-.++..-.+|.+-++..--. .-++.+.+.|-.|+.. .+...++-+|++.+|.++|.+--..| .-+..|..
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTD 670 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTD 670 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHH
Confidence 44666667777776655433 3345666777667664 35677888899999999997754322 23334444
Q ss_pred cCChhhHHHhhhcCCC--------------CCcccHHHHHHHHhhcCChHHHHHHHH------HhHHcCCCC---CHhhH
Q 043580 102 NDRLNDAREVFDKTPI--------------KCCVSYTSMIMGFAQNDCWREALEVFR------DMRILGVIP---NEVTL 158 (665)
Q Consensus 102 ~~~~~~A~~~~~~~~~--------------~~~~~~~~ll~~~~~~~~~~~a~~~~~------~m~~~g~~p---~~~~~ 158 (665)
.+.++.|.+++..-.. .++.-=.+....+...|+.++|..+.- .+.+.+-+. +..+.
T Consensus 671 lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l 750 (1081)
T KOG1538|consen 671 LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPL 750 (1081)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHH
Confidence 4445555444432210 011111223344556666666665422 222222222 33445
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHH
Q 043580 159 ASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVE 238 (665)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (665)
..+..-+.+...+..|-++|..+-.. .++++.+...+++++|..+-+..++--..+|-....-++..++++
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHH
Confidence 55555555666677777777666433 246677777888888888887777633334444555556666666
Q ss_pred HHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHC
Q 043580 239 LARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCD 281 (665)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 281 (665)
+|.+ +|.+.|+-.+|..+++++-..
T Consensus 822 EAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 822 EAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 6654 345667777888888777554
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.48 E-value=0.011 Score=49.43 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD-----CGMKRL 658 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 658 (665)
.....++..+...|+++.|...+++++..+|-+...+..|..+|...|+..+|++.|+++.+ .|+++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 34566777788999999999999999999999999999999999999999999999998854 455444
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.11 Score=47.13 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT---LLAASRIHGNVE 607 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 607 (665)
....|+..+|...|+..... .| +...--.++.+|...|+.+.|..++..+...-...-+.. -+..+.+..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34455666666666665532 34 444555566666666666666666666653322222221 111222222222
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 608 VGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+... +++-...+|++......|+..|...|+.++|.+.+-.++.+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111 22223446666666666666666666666666665555443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.42 E-value=0.015 Score=56.38 Aligned_cols=65 Identities=11% Similarity=-0.129 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+...|+.+..+|.+.|++++|+..++++++++|++... ++.++.+|..+|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555532 555555555555555555555555553
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=96.38 E-value=0.041 Score=45.38 Aligned_cols=87 Identities=8% Similarity=-0.017 Sum_probs=45.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHH
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 576 (665)
...|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|+..|...... .+ |+..+-....+|...|+.+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---LKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccCCCCccchHHHHHHHhCCHHH
Confidence 34455555555555554432 223444445555555556666666666555422 23 34444445566666666666
Q ss_pred HHHHHHhCCCCC
Q 043580 577 AEEVIRSMPMKA 588 (665)
Q Consensus 577 A~~~~~~~~~~~ 588 (665)
|+..|+....+|
T Consensus 124 A~~~f~~a~~~~ 135 (165)
T PRK15331 124 ARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHhCc
Confidence 666665555444
No 238
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.34 E-value=0.35 Score=41.63 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=101.3
Q ss_pred hcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHH
Q 043580 466 KCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERY 544 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 544 (665)
..|-+.-|.--|.......|+ +.+||-+.--+...|+++.|.+.|+...+....-+....|.-+ ++.-.|++..|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 334445555555555555454 4567777777788889999999888888754222222233222 34457888888876
Q ss_pred HHHhHhhcCCCCChhHHHHHhhHhh--hcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 545 FKSMKSVYNVEPDLKHYGCMVDLLG--RAGQLEDAEEVI-RSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 545 ~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
+...-+. .|+.. |.+| ..|. ..-++.+|..-+ ++.. +.+..-|...+-.+.- |+.. -+.+++++.+...
T Consensus 156 ~~~fYQ~---D~~DP-fR~L-WLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 156 LLAFYQD---DPNDP-FRSL-WLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHhc---CCCCh-HHHH-HHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 6665533 45211 2222 2222 334666776544 4443 3455556554444332 1110 1223333333322
Q ss_pred CC-------CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 622 SH-------GPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 622 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
++ ..+|+.|++.|...|+.++|..+|+-++.-
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22 244888999999999999999999877653
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=1.6 Score=44.78 Aligned_cols=176 Identities=13% Similarity=0.059 Sum_probs=87.1
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHhhcCC-CCcchhhHHHHHH----------HhcCChhhHHHhhhcCCCCCcccH
Q 043580 55 ESNTFIQNSLINLYAKCGLISQAKSMFDSCST-LDPVACNIMISGY----------IRNDRLNDAREVFDKTPIKCCVSY 123 (665)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~----------~~~~~~~~A~~~~~~~~~~~~~~~ 123 (665)
.|.+..|..|...-.+.-.++.|+..|-+... +.......|-..+ +--|++++|++++-.+.+.|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 57777777777777777777777776655433 1111111111111 123778888888877765543
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhHHcCCCCC----HhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 043580 124 TSMIMGFAQNDCWREALEVFRDMRILGVIPN----EVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNM 199 (665)
Q Consensus 124 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (665)
.|..+.+.|++..+.+++..= |-..| ...++.+...++....++.|.+.+...... ...+.+
T Consensus 766 --Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ec 831 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIEC 831 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHH
Confidence 345555666666665554331 11111 124555555566656666665555433211 123344
Q ss_pred HhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCC
Q 043580 200 YCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIP 248 (665)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (665)
+.+..++++-+.+...+++. ......+..++...|.-++|.+.+-+..
T Consensus 832 ly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 44444444444444333332 2233344444555555555555444433
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.29 E-value=0.14 Score=42.67 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh----hcCCCCChhHH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS----VYNVEPDLKHY 561 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~ 561 (665)
...++..+...|+++.|..+++.+.... +-|...|..++.+|...|+...|.+.|+++.+ ..|+.|++.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666777777777777777754 44666777777777777777777777776643 34777765543
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.26 E-value=0.01 Score=34.57 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
..|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566666677777777777777777766653
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.22 E-value=1.3 Score=42.90 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHH-HHH
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHY-GCM 564 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 564 (665)
..+|...+..-.+....+.|..+|-++.+.| +.++...+++++.-++ .|+...|.++|+.-... .||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456667777777777888888888888887 5667777777777555 47778888888876643 4543333 334
Q ss_pred hhHhhhcCChHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMPMK----ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
+..+.+-++-+.|..+|+....+ .-..+|..++.--..-|+...+..+-+++.+..|.....-
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~e 539 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIE 539 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHH
Confidence 55566778888888888865422 2256788888877888888888888888888888765543
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.21 E-value=0.96 Score=41.38 Aligned_cols=199 Identities=15% Similarity=0.058 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-chHHHHHH-
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNN-SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-SPWNAIIC- 495 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~- 495 (665)
...+......+...+....+...+...... ........+......+...+++..+...+.......++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555556666666666655555442 223333455556666667777778888887777653333 22333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC----ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhHhh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKL----NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDLLG 569 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 569 (665)
.+...|+.+.+...+++.... .| ....+......+...++.+.+...+...... .|+ ...+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHH
Confidence 678889999999999888552 33 2334444444466788999999999998853 443 677888888888
Q ss_pred hcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 570 RAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..++++.|...+.... ..|+ ...+..+...+...|..+.+...+.+.....|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999988876 3344 456666666666777899999999999999888
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.16 E-value=0.91 Score=40.69 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHchhCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc-----
Q 043580 464 YAKCGSINTAFEVFYHIRDRTTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH----- 534 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----- 534 (665)
-.+.|++++|.+.|+.+...-|. ..+.-.++-++.+.++++.|+..+++....-......-|...+.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 45667888888888877766222 223444556667778888888888777765322122233333333332
Q ss_pred --cChHHH---HHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHH
Q 043580 535 --AGLVDL---GERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIW--GTLLAASRIHGNVE 607 (665)
Q Consensus 535 --~~~~~~---a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~ 607 (665)
..|... |..-|+.+..+ -||.. -...|...+..+. +.... ..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 122222 33333333332 33211 1111111111110 00011 23455678888888
Q ss_pred HHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 043580 608 VGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRDCGMKRL 658 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 658 (665)
.|..-++++++--|+.+.. +..+..+|...|-.++|.+.-+- ++.+..+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s 237 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANYPDS 237 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCC
Confidence 8888888888877766554 55677778888888888776543 34444333
No 245
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.15 E-value=0.015 Score=48.94 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=76.3
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRI 602 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 602 (665)
.-+.+.|++++|..-|...... +.|. ...|..-+.++.+.++++.|+.-..+.. ..|+ ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4567788888888888888753 2221 2345555666777888888887776665 4442 2333333456777
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH--HHHHHHHhCC
Q 043580 603 HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF--SIRKEMRDCG 654 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~~ 654 (665)
...++.|+.-|+++.+.+|....+....+.+--......+++ +++.++++.|
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 778888888888888888887766555555433333333333 2344454444
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.14 E-value=1.2 Score=41.89 Aligned_cols=126 Identities=11% Similarity=0.044 Sum_probs=54.2
Q ss_pred HhCC-CchHHHHHHHHHHHC--------CCCCCh-----hHHHHHHHHHHccCcHHHH---HHHHHHHHHcCCCCChhHH
Q 043580 395 AQNE-QPNMALELFHGMVDA--------GVKPNE-----ITMVSVFCAIASSGTLKEG---RWAHEYVLNNSITLNDNLS 457 (665)
Q Consensus 395 ~~~~-~~~~a~~~~~~m~~~--------~~~p~~-----~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~ 457 (665)
...+ +++.|..++++..+. ...|+. .++..++.++...+..+.. ..+++.+.. ..+..+.++
T Consensus 46 ~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~ 124 (278)
T PF08631_consen 46 LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVF 124 (278)
T ss_pred HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHH
Confidence 3444 666666666554332 122222 2334445555555444333 233333321 112222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCC
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLA--MHGDANLTLKIYSDLEKRNIKLN 521 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~ 521 (665)
..-++.+.+.++.+.+.+.+.+|....+ ....+...+..+. .......|...+..+....+.|.
T Consensus 125 ~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 125 LLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 3344444445566666666666655422 2334444444331 12233444455555444444443
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.12 E-value=0.0096 Score=34.72 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666777777777777777777777777775
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.07 E-value=0.12 Score=41.69 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccCCCCCch
Q 043580 606 VEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~ 626 (665)
...|...|+++++..|++.-.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 678888999999999987643
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.97 E-value=1 Score=43.48 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCC---CCCChhHHHHHHHHHHc---cCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAG---VKPNEITMVSVFCAIAS---SGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
.++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|.+++..+......+++.++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555555666666655555421 00111111122233333 5555555555555444444445555544444
Q ss_pred HH
Q 043580 463 MY 464 (665)
Q Consensus 463 ~~ 464 (665)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 33
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.92 E-value=1.2 Score=39.96 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=69.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCCh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNI-KL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (665)
-.+.|++++|.+.|+.+..... .| ...+...++-++.+.++++.|+...++..+.+.-+||.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~---- 118 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSY---- 118 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHH----
Confidence 3455666666666666664420 11 233445555566666666666666666665544444422 2222222220
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch-----------------HHHHHHHHHh
Q 043580 575 EDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS-----------------RVLLSNIYAD 636 (665)
Q Consensus 575 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~ 636 (665)
+.... ..-|. .-...|..-++..+...|++.-. -...+..|.+
T Consensus 119 ------~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 119 ------FFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred ------hccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000 01233444445555555554321 3467778999
Q ss_pred cCChhHHHHHHHHHHhC
Q 043580 637 AGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 637 ~g~~~~A~~~~~~~~~~ 653 (665)
.|.+..|..-++++++.
T Consensus 180 r~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 180 RGAYVAAINRFEEVLEN 196 (254)
T ss_pred hcChHHHHHHHHHHHhc
Confidence 99999999999999874
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.82 E-value=2.5 Score=42.79 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..+...+..-.+.|+.+.+.-.|++..-. ..-...|-..+.-....|+.+.|..++....+--.+-.+.+...-..-+-
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 46666677777888888888888877653 12233455555555556888888888777665433333332222222334
Q ss_pred ccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHH---HHHHhCC-CCCCHHHH----HHHHHH-HHhc
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAE---EVIRSMP-MKADVVIW----GTLLAA-SRIH 603 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~----~~l~~~-~~~~ 603 (665)
..|+++.|..+++.+.+. . |+ ...-..-+....+.|+.+.+. +++.... .+-+..+. ....+- +.-.
T Consensus 378 ~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 568999999999999985 3 64 333333455566888888888 5554443 22232222 222322 4457
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
++.+.|..++.++.+..|++-..+..+.......+
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 89999999999999999999998888887766655
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.81 E-value=0.093 Score=41.90 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..++..++.++++.|+++....+++..-....+.. ...+. --......|+..++.+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 45667777778888888777777766544311100 00000 0112346788888888888888
Q ss_pred ccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhh
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLG 569 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (665)
..|++..|.++.+.+.+.++++-+..+|..|++-..
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888888886667778877766443
No 253
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=3.5 Score=48.93 Aligned_cols=312 Identities=11% Similarity=0.034 Sum_probs=175.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-c---CC--chhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCc
Q 043580 327 TIIHFYAACGRINLARLQFELG-I---KD--HIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQP 400 (665)
Q Consensus 327 ~l~~~~~~~g~~~~a~~~~~~~-~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 400 (665)
.+..+-.+++.+..|...++.- . +. ....|..+...|..-+++|....+... ...+...+.. |......|++
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~q-il~~e~~g~~ 1465 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQ-ILEHEASGNW 1465 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHH-HHHHHhhccH
Confidence 4555777888899998888862 1 11 122344555589999999888888774 1223333333 3345667999
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 401 NMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLND-NLSAAIIDMYAKCGSINTAFEVFYH 479 (665)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 479 (665)
..|...|+.+.+.+ ++...+++.++......+.++...-..+-..... .+.. ..++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999999864 4447778888888888888777666544443322 1222 222333344467777777666655
Q ss_pred chhCCCCcchHHHH--HHHHHh--cCChHHHHHHHHHHHHcCCCCC---------hHHHHHHHHHhcccChHHHHHHHHH
Q 043580 480 IRDRTTSVSPWNAI--ICGLAM--HGDANLTLKIYSDLEKRNIKLN---------SITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 480 ~~~~~~~~~~~~~l--~~~~~~--~~~~~~a~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
. .+...|... .....+ ..|.-.-...++.+++.-+.|= ...|..++....-. +.+..
T Consensus 1543 --~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~----- 1612 (2382)
T KOG0890|consen 1543 --D--RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS----- 1612 (2382)
T ss_pred --c--ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH-----
Confidence 1 333344433 222222 2232222234444443322220 01222222221111 01111
Q ss_pred HhHhhcCCCCCh------hHHHHHhhHhhhcCChHHHHHHHHhCC----CC-----CCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 547 SMKSVYNVEPDL------KHYGCMVDLLGRAGQLEDAEEVIRSMP----MK-----ADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 547 ~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.....++.++. ..|..-+..-....+..+-+--+++.. .. .-..+|-+........|.++.|..
T Consensus 1613 -~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1613 -IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred -HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11111344421 112222221111112222222222211 12 245788889999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
.+-++.+.. -+..+.-.++.++..|+...|+.++++.++....
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999988766 5567888899999999999999999999876543
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.70 E-value=0.16 Score=47.19 Aligned_cols=224 Identities=12% Similarity=0.000 Sum_probs=94.1
Q ss_pred HhCCCchHHHHHHHHHHHCC--CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHHHhc
Q 043580 395 AQNEQPNMALELFHGMVDAG--VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN--SITLN---DNLSAAIIDMYAKC 467 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~ 467 (665)
....+.++|+..+.+-..+- ..---.+|..+..+.+..|.++++...--.-+.. ....+ ...|..+.+.+.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766654421 1112234555566666666666654432222110 00011 11222333333333
Q ss_pred CCHHHHHHHHHHchhC---CC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--ChHHHHHHHHHhcccC
Q 043580 468 GSINTAFEVFYHIRDR---TT---SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK---L--NSITFIGVLSTCCHAG 536 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~ 536 (665)
.++.+++.+-..-... .+ .-.....+..++...+.++++++.|+...+---. | ....+..+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3333333333222221 01 0012233444455555566666665554432111 1 1124555555555556
Q ss_pred hHHHHHHHHHHhHhh---cCCCCChhHHH-----HHhhHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHH
Q 043580 537 LVDLGERYFKSMKSV---YNVEPDLKHYG-----CMVDLLGRAGQLEDAEEVIRSMP----MKAD----VVIWGTLLAAS 600 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~---~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~ 600 (665)
|+++|.-+..+..+. +++.--..-|. .|..++...|....|.+..++.. ..-| ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 666655544443221 12221111122 23334445555555555554432 1112 22233444555
Q ss_pred HhcCCHHHHHHHHHHHhc
Q 043580 601 RIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (665)
...|+.|.|..-|+++.+
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 555666665555555543
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.33 Score=44.72 Aligned_cols=157 Identities=11% Similarity=0.010 Sum_probs=88.8
Q ss_pred hcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH----HHHHHhcccChHHH
Q 043580 466 KCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFI----GVLSTCCHAGLVDL 540 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~ 540 (665)
-.|+..+|...++++.+. +.|..++..-=.+|...|+...-...++++... ..||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666666666666665 555666666666777777777666666666654 234433222 22233445677777
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKA-------DVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
|.+.-++.. .++| |.-...++...+--.|++.++.+++.+-...- .-..|.. .-.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 777666665 4555 55556666666667777777777776654211 1111211 1123344667777777
Q ss_pred HHHH--hccCCCCCchH
Q 043580 613 AKSL--AGLQPSHGPSR 627 (665)
Q Consensus 613 ~~~~--~~~~p~~~~~~ 627 (665)
|..= .+++.++....
T Consensus 270 yD~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVAR 286 (491)
T ss_pred HHHHHHHHhhccchhhh
Confidence 7443 34555555543
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.55 E-value=0.75 Score=36.21 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
.-+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33444555555565556665555433 555555556666666666666666666655544
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.45 E-value=2.9 Score=41.11 Aligned_cols=148 Identities=11% Similarity=-0.009 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHH
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHY 561 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~ 561 (665)
..+|..++..+.+.|.++.|...+.++...+... .+.....-+......|+..+|+..++..... .+.. +....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 3467777777888888888888877777643222 2333344455556667778888877777652 1111 11111
Q ss_pred HHHhhHhhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 562 GCMVDLLGRAGQLEDAEEVI-RSMPMKADVVIWGTLLAASRIH------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
..+...+.. ..+.....- .......-...+..+...+... ++.+.+...|+++.++.|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 000000000 0000000112233333333344 7889999999999999999999988888876
Q ss_pred Hhc
Q 043580 635 ADA 637 (665)
Q Consensus 635 ~~~ 637 (665)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 544
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=1.5 Score=38.84 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCCCCCchH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-------MKADV-VIWGTLLAASRIHGNVEVGERAAKSLAG----LQPSHGPSR 627 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~ 627 (665)
.+..+.+.|.+..++++|...+.+-. .-++. ..+...+-.+....|+..|+..++...+ +.|++....
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445555666666666655544432 01221 2233444444555566666666666433 234444445
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 043580 628 VLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~ 647 (665)
..|..+| ..|+.+++.+++
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5554433 455666655544
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.33 E-value=1.3 Score=36.45 Aligned_cols=127 Identities=9% Similarity=-0.024 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHh
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLL 568 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (665)
....++..+...+.+.....+++.+...+ ..+...++.++..|++.+. ......++. .++.......+..|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34456666666677777777777777765 3566677777777776543 333344432 12223333456666
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH-GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
.+.+.++++.-++.++.. +...+..+... ++.+.|++++++ ++++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 677777777777777642 22233333333 677777777765 234445555554443
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.24 E-value=6.2 Score=43.58 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=79.7
Q ss_pred CCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHH----HccCcHHHHHHHH
Q 043580 367 GMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAI----ASSGTLKEGRWAH 442 (665)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~ 442 (665)
++++.|+.-+..+. ...|...++.-.++|.+.+|+.++ .|+...+..+..+| .....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444444443 223333344344455555555553 56666655444443 3344555554444
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 443 EYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS--PWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
+..-+ ....+.+|..+|++.+|..+-.++... .+.. .-..|+.-+...+++-+|-+++.+....
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---- 1028 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---- 1028 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----
Confidence 43321 122445566666666666666555442 1111 1245666666777777777776665542
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMK 549 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 549 (665)
....+..+++...|++|.++-....
T Consensus 1029 ----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 ----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2334455667777777777666544
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.24 E-value=0.036 Score=32.76 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 627 RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 627 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+..|+.+|.+.|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66789999999999999999998653
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=5.1 Score=42.37 Aligned_cols=176 Identities=12% Similarity=0.083 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCee---eHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPSKDVV---SWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
...-|..+.+...++-|+.+-+.-..+... ....-.+.+.+.|++++|...|-+-... +.|+ .+|.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 344455555555666666655544332111 1222233445667777777776665432 3443 234444444
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch-hhHHHHHHHHHhcCCHHHHHHHHhhc
Q 043580 301 MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI-ASWNALIAGFIRNGMIEDARQLFNNM 379 (665)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 379 (665)
.....--.+++.+.+.|+. +......++.+|.+.++.+.-.++.+..-.... .-....+..+.+.+-.++|.-+-...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4555555566666666644 334445677777777777777666654442111 12344555566666666666655544
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 043580 380 QKRDVYSWSAMISGYAQNEQPNMALELFHGM 410 (665)
Q Consensus 380 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 410 (665)
.. .......++ -..+++++|++.+..+
T Consensus 490 ~~-he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred cc-CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 33 333333333 3456778888777665
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.19 E-value=0.57 Score=47.72 Aligned_cols=115 Identities=15% Similarity=0.024 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHH-HHhcccChHHHHHHHHHHhHhh-cCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVL-STCCHAGLVDLGERYFKSMKSV-YNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
.+.+.|.++++.+.+. -|+...|...- +.+...|+.++|++.|++.... ...+. ....+--++.++.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445566666666553 45444443322 2334456666666666654321 01111 233344455556666666666
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHh
Q 043580 578 EEVIRSMPM--KADVVIWGTLLAA-SRIHGNV-------EVGERAAKSLA 617 (665)
Q Consensus 578 ~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~ 617 (665)
.+.+.++.. +.+...|..+..+ +...|+. ++|..+++++-
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 666666652 2233333333333 2345555 56666665553
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=2.5 Score=38.81 Aligned_cols=150 Identities=14% Similarity=0.095 Sum_probs=89.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChH
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (665)
.....|+...|..+|+...... +-+...-..++.+|...|+.+.|..++..+-.. .-.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777666643 333455566677777777777777777766432 11111222223345555556666
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 576 DAEEVIRSMPMKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGL--QPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 576 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+...+-++....| |...-..+...+...|+.+.|.+.+-.++.. .-++......|..++...|.-+.+-..+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5556655655455 5666667777777778887777777666543 3445566677777777776444443333
No 265
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.05 E-value=1.4 Score=36.98 Aligned_cols=135 Identities=12% Similarity=0.012 Sum_probs=76.0
Q ss_pred HHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCC
Q 043580 140 LEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKER 219 (665)
Q Consensus 140 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 219 (665)
.+.+.-+.+.++.|+...+..+++.+.+.|.... +.++++.++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556677888888888888888888887654 344455555555444333332222 2223333333333332
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHH
Q 043580 220 NIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLC 280 (665)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 280 (665)
=...+..++..+...|++-+|++..+....-+......++.+..+.++...-..+|+-..+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2224455666666777777777777665544444555566666666665555555554443
No 266
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.04 E-value=0.087 Score=42.07 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=33.5
Q ss_pred cCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-hcCCchhHHHHHHHHH
Q 043580 149 LGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-MIDGFVIISTNLLNMY 200 (665)
Q Consensus 149 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 200 (665)
....|+..+..+++.+++..+++..|.++.+...+. +++.+..+|..|+.-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345667777777777777777777777777666554 3555566666666543
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.89 E-value=0.49 Score=47.40 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHH--HchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChH
Q 043580 461 IDMYAKCGSINTAFEVFY--HIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLV 538 (665)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 538 (665)
.....-.++++++.++.. .+...-| ..-.+.++.-+.+.|-++.|+++..+-.. -.....+.|+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 445556788888766664 2232212 44577778888888888888887433221 23344567888
Q ss_pred HHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 539 DLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 539 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
+.|.++.+.. ++...|..|.+...+.|+++-|++.+++.. -+..|+-.|...|+.+.-.++.+.+..
T Consensus 335 ~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8887755443 366789999999999999999999998886 256677778888888777777776654
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 619 LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 619 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
..-. ...-.++.-.|+.++-.+++.+.
T Consensus 402 ~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 3322 22223455678888888777553
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=6.3 Score=41.70 Aligned_cols=177 Identities=11% Similarity=0.035 Sum_probs=97.4
Q ss_pred chhhHHHHHHHhcCChhhHHHhhhcCCCCCc---ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHh
Q 043580 90 VACNIMISGYIRNDRLNDAREVFDKTPIKCC---VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSV 166 (665)
Q Consensus 90 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 166 (665)
.....-|..+.+...++.|..+-+.-..+.. .....-...+.+.|++++|...|-+-... +.|. .+|.-|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 3445566667777777777777655443221 12333344556778888888777665532 2222 2444454
Q ss_pred ccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcc--cHHHHHHHHHhcCCHHHHHHHH
Q 043580 167 HLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIV--SWNVMLNGFAKAGLVELARELF 244 (665)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 244 (665)
.......--.+++.+.+.|+...-. -+.|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|..+-
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 4455555556677777777543333 34577888888887777777666652 222 2344555555555555555554
Q ss_pred hhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHH
Q 043580 245 ERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAM 278 (665)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 278 (665)
.+... .......+ +-..+++++|++.+..|
T Consensus 487 ~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 44333 12222222 22346677777766554
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.81 E-value=0.1 Score=40.67 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=53.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..++...|+.+.|++.|.+++.+-|..+..|..-+++|.-+|+.++|+.-++++++..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3457789999999999999999999999999999999999999999999999998843
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.79 E-value=1.3 Score=44.51 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=99.1
Q ss_pred HHHhhcCChHHHHHHHH--HhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 128 MGFAQNDCWREALEVFR--DMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 128 ~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
+...-+++++.+.++.. .+.. .+ .......++.-+.+.|-.+.|.++-..-. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33455678888776664 1221 11 24457778888888888888887643322 12455678899
Q ss_pred HHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCC
Q 043580 206 LVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAP 285 (665)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 285 (665)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+. .-|..|+-.|.-.|+.+...++.+....+|-
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA-----KDFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC-----T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cCccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 999998887766 4558999999999999999999999884 4577788888888888888888777776552
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHH
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHS 311 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 311 (665)
++..+.++.-.|+.++..+++.
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555677776666553
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.66 E-value=0.062 Score=49.36 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=81.8
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 604 (665)
-..-|.+.|.+++|+..|.+.. .+.| |+.++..-+.+|.+..++..|..-+..+. .+.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999988 6688 89999999999999999998888777765 2223344555555666678
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
+.++|.+-++.++++.|++... -..|....-..|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL----KKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH----HHHHHHhcchHhh
Confidence 8999999999999999996553 3344444444443
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.65 E-value=0.9 Score=44.75 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS----HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
....+|..+...+.+.|+++.|...+.++.+..+. .+.....-++.++..|+..+|.+.+++.+....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999876532 455667778999999999999999999988333
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.59 E-value=0.058 Score=31.31 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555555
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=0.85 Score=38.84 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=47.6
Q ss_pred HhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT-----LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
+...+..+|++++|...++.....|....+.. |.......|.++.|...+....+-. -.+.....-|.++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcC
Confidence 34445566666666666665553333333322 2334445666666666655332210 01122345566677777
Q ss_pred ChhHHHHHHHHHHhCC
Q 043580 639 RWEDAFSIRKEMRDCG 654 (665)
Q Consensus 639 ~~~~A~~~~~~~~~~~ 654 (665)
+.++|++.|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777766654
No 275
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.11 Score=45.32 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=65.9
Q ss_pred hHhhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP-MKADV-VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
+.|....+++.|+..+.+.. ..|.. ..|..=+.++.+..+++.+..--++++++.|+....++.|+..+.....+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 34445566777777666654 56766 34455566677788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 043580 644 FSIRKEMRDC 653 (665)
Q Consensus 644 ~~~~~~~~~~ 653 (665)
+..+.++.+.
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 8888888553
No 276
>PRK09687 putative lyase; Provisional
Probab=94.42 E-value=4.4 Score=38.02 Aligned_cols=121 Identities=14% Similarity=0.001 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcC-CHHHHHH-HHhhCCCCCeeeHHHHHHHHhhc
Q 043580 188 GFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAG-LVELARE-LFERIPSKDVVSWGTMIDGYLQV 265 (665)
Q Consensus 188 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~ 265 (665)
++..+-...+.++++.++.+....+..-+.++|...-...+.++++.+ +...+.. +...+..++..+-...+.++.+.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 344455555666666665433333333333444444444444444432 1223333 23333345555566666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 043580 266 ERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVK 315 (665)
Q Consensus 266 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 315 (665)
++ ..++..+-...+.+. .....+.++...|+. .+...+..+.+
T Consensus 220 ~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 220 KD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 65 344444444444322 123455566666664 45555555554
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=3.3 Score=36.45 Aligned_cols=21 Identities=5% Similarity=-0.173 Sum_probs=10.7
Q ss_pred hcCCHHHHHHHHHHHhccCCC
Q 043580 602 IHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..+++.+|+.+|++.....-+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555443333
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.37 E-value=0.081 Score=33.03 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..+..|+.+|...|++++|+++|+++++...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999988654
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.29 E-value=2.8 Score=35.25 Aligned_cols=131 Identities=7% Similarity=0.010 Sum_probs=69.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcC--CHHHHHHHHhhcCCCCcch
Q 043580 309 IHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNG--MIEDARQLFNNMQKRDVYS 386 (665)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 386 (665)
..+.+.+.+++++...+..+++.+.+.|++.....+++..+-+|.......+-.+.... -..-|.+.+.++. ..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~ 91 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TA 91 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hh
Confidence 33444555666666666666666666666666666666555555444443332222211 1223334444332 24
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 043580 387 WSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN 447 (665)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (665)
+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++..+.+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666777778888888777654221 122234455565555655555555555443
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.17 E-value=0.066 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..+..+|.+|...|++++|++.++++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 357899999999999999999999998754
No 281
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.14 E-value=0.34 Score=45.15 Aligned_cols=219 Identities=10% Similarity=0.062 Sum_probs=113.3
Q ss_pred HHccCcHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHH----chhCCCC---cchHHHHHHHHHh
Q 043580 429 IASSGTLKEGRWAHEYVLNN--SITLNDNLSAAIIDMYAKCGSINTAFEVFYH----IRDRTTS---VSPWNAIICGLAM 499 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~---~~~~~~l~~~~~~ 499 (665)
+....+.+.+...|..-... +....-.++..+..+.++.|.++++...--. ..+.... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777666542 1112224566666777777777765543221 1111111 1234445555555
Q ss_pred cCChHHHHHHHHHHHHc-CCCC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CCC--ChhHHHHHhhHhhhc
Q 043580 500 HGDANLTLKIYSDLEKR-NIKL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VEP--DLKHYGCMVDLLGRA 571 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~ 571 (665)
.-++.+++.+-+.-... |..| -.....++..++...+.++++++.|+...+--. -.| ...++..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443332 2222 112334455566666677777777776654211 111 234566677777777
Q ss_pred CChHHHHHHHHhCC-------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch----------HHH
Q 043580 572 GQLEDAEEVIRSMP-------MKAD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS----------RVL 629 (665)
Q Consensus 572 g~~~~A~~~~~~~~-------~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----------~~~ 629 (665)
.++++|.-+..++. .+.- ..+...+.-++...|..-.|.+.-+++.+ -... ...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k----lal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK----LALQHGDRALQARCLLC 251 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH----HHHHhCChHHHHHHHHH
Confidence 77777665554432 1111 12233444556666666666666666533 1100 234
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 043580 630 LSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
++++|...|+.|.|..-|+.++
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHH
Confidence 6666777777777776666654
No 282
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.02 E-value=0.47 Score=42.65 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=74.6
Q ss_pred HHHHHHchhCCCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC------------
Q 043580 474 FEVFYHIRDRTTSVSPWNAIICGLAM-----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG------------ 536 (665)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------ 536 (665)
++.|..+.....+-.+|...+..+.. .+..+-..-.++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444434566677777776653 3566777777889999999999999999998776532
Q ss_pred ----hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCC
Q 043580 537 ----LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 537 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (665)
+-+-++.++++|... |+.||.++-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 334588999999987 999999999999999988764
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.99 E-value=0.14 Score=47.19 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=65.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
..-|.++|.+++|+..|...+.. .| |.+++..-..+|.+...+..|..-....... .- -...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 35688999999999999988874 55 8899999999999999998888877766532 22 234444444444455
Q ss_pred CChHHHHHHHHhCC-CCCCHH
Q 043580 572 GQLEDAEEVIRSMP-MKADVV 591 (665)
Q Consensus 572 g~~~~A~~~~~~~~-~~~~~~ 591 (665)
|+..+|.+-++... ..|...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 66667766666654 556543
No 284
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.95 E-value=10 Score=40.45 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=76.2
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCCh--HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChH
Q 043580 499 MHGDANLTLKIYSDLEKRN-IKLNS--ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (665)
...+.+.|...+....... +.+.. .....+.......+..+++...++..... ..+......-+..-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 3556788888888775543 22222 23333433333332245667776665422 235555555566666888999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 576 DAEEVIRSMPM--KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 576 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
.+...+..|.. .-...-..-+..++...|+.++|...|+++.. + ..+|-.|+
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 88888888862 22334445567777778999999999998744 2 24555554
No 285
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.77 E-value=0.55 Score=42.25 Aligned_cols=108 Identities=10% Similarity=0.173 Sum_probs=79.4
Q ss_pred HHHHhhcC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccC------------
Q 043580 373 RQLFNNMQ--KRDVYSWSAMISGYAQN-----EQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSG------------ 433 (665)
Q Consensus 373 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 433 (665)
+..|.... ++|..+|-+.+..+... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 35555555 45667777777766543 456667777888999999999999999988876543
Q ss_pred ----cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH-HHHHHHHHc
Q 043580 434 ----TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSIN-TAFEVFYHI 480 (665)
Q Consensus 434 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~ 480 (665)
.-.-+.++++.|...|+.||..+-..|+.++++.+..- +..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23457899999999999999999999999999888643 333443333
No 286
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.69 Score=42.76 Aligned_cols=162 Identities=11% Similarity=0.008 Sum_probs=123.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHH----HHhhHhhhcC
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYG----CMVDLLGRAG 572 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 572 (665)
....|+..+|...|+++.+. .+.|...+...-.+|...|+.+.-...++++.. ..+|+...|. .+..++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888888899999886 467888888888999999999999999998874 3456654444 4556667899
Q ss_pred ChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCChhHHHHH
Q 043580 573 QLEDAEEVIRSMP-M-KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 573 ~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
-+++|++.-++.. . +.|...-.++...+...|+.+++.++..+-...=... ...|-+.+-.+.+.+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999999986 3 3456666677777888999999999988764322211 23355677778888999999999
Q ss_pred HHHHHhCCCccCCCc
Q 043580 647 RKEMRDCGMKRLPGF 661 (665)
Q Consensus 647 ~~~~~~~~~~~~~~~ 661 (665)
|++=+-...+|+.+.
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 988777777776653
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.64 E-value=0.11 Score=30.73 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.55 E-value=15 Score=40.89 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=106.5
Q ss_pred hhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 043580 263 LQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLAR 342 (665)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 342 (665)
..+.++.+-+.++++++. .+++..-|. |+- ..++++.|+.-+..+ +...+....+.-.+.|-+..|.
T Consensus 862 ~SqkDPkEyLP~L~el~~--m~~~~rkF~--ID~--~L~ry~~AL~hLs~~-------~~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKK--METLLRKFK--IDD--YLKRYEDALSHLSEC-------GETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HhccChHHHHHHHHHHhh--chhhhhhee--HHH--HHHHHHHHHHHHHHc-------CccccHHHHHHHHhcccchhhh
Confidence 345566666666666653 233222221 111 123344444333222 2334455555566677777777
Q ss_pred HHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh--
Q 043580 343 LQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI-- 420 (665)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-- 420 (665)
.++..+.+.-...|.+..+.+...+.+++|.-.|+..-+ ....+.+|...|+|.+|+.+-.++... -+..
T Consensus 929 ~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~ 1000 (1265)
T KOG1920|consen 929 ALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVI 1000 (1265)
T ss_pred heeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHH
Confidence 766555555555666666777777777777777765532 223456677778888888877665431 1111
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
+-..|...+...+++-+|-++..+.... ....+..|++...+++|.++-....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1245566666677777777666655432 1234556677777777777665544
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.53 E-value=9.7 Score=38.78 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=97.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCA 428 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 428 (665)
+..+|...+.--...|+.+.+.-+|+...-+ =...|-..+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888888888888888888877654 1223433344344447777777776655543222222221111122
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHH---HHHHHchhCCCCcchHHHHHHHH-----Hh
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLND-NLSAAIIDMYAKCGSINTAF---EVFYHIRDRTTSVSPWNAIICGL-----AM 499 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~l~~~~-----~~ 499 (665)
+-..|+.+.|..+++.+.+.- |+. .+-..-+....+.|+.+.+. .++........+......+.--+ .-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 334568888888888877654 332 33333445556677777776 44444433333333333333222 23
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
.++.+.|..++.++.+. .+++...|..++..+.
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 45666666666666664 2445555555555443
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.50 E-value=0.85 Score=38.86 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLN-----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
-+...|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|+.-..+.+ .+.| .......-+.+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHHH
Confidence 3555666666666666655542 221 1233333445555566666665555554 3345 3333334455555
Q ss_pred hcCChHHHHHHHHhCC
Q 043580 570 RAGQLEDAEEVIRSMP 585 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~ 585 (665)
+..++++|++-|+++.
T Consensus 180 k~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKIL 195 (271)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 6666666666655554
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.41 E-value=2.9 Score=39.41 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHHHHHchhC-----CCCcchHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccCh--
Q 043580 471 NTAFEVFYHIRDR-----TTSVSPWNAIICGLAMHGD----ANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGL-- 537 (665)
Q Consensus 471 ~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~-- 537 (665)
.+|..+++.|++. .++-.++..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 3455566666555 2333344444333 2222 34566777788887776633 234444443333322
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCCh
Q 043580 538 VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 538 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (665)
..++.++++.+.+. |+++....|..++-...-.+..
T Consensus 198 v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 198 VARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCch
Confidence 34778888888887 8888666677665444333333
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.40 E-value=0.11 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..+..+|.+|...|++++|++.++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 357899999999999999999999998754
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.15 E-value=2.6 Score=41.71 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=55.8
Q ss_pred CCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCCCchHHH
Q 043580 555 EPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DVVIWGTLLAASRIHGNVEVGERAAKSLAGL-QPSHGPSRVL 629 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~ 629 (665)
+|-..+-..+..++.+.|+.++|++.++++. ..| .......|+.++...+.+.++..++.+.-++ .|++.+..+.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 3434455567888888999999999998885 223 2346678888999999999999999887654 4666666554
Q ss_pred HH
Q 043580 630 LS 631 (665)
Q Consensus 630 l~ 631 (665)
-+
T Consensus 336 aA 337 (539)
T PF04184_consen 336 AA 337 (539)
T ss_pred HH
Confidence 43
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.07 E-value=10 Score=37.74 Aligned_cols=174 Identities=7% Similarity=0.028 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
+....-+++..++.+....-.+.+..++...+.+-..+..++.+|... ..+.-..+|+++.+.. -|......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 333444555666666666666666666665555555666666666665 5566666666666643 2222222222222
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC---C---hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHh
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP---D---LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKADVVIWGTLLAASRI 602 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~ 602 (665)
...++.+.+..+|.++... +-| + ...|.-|... -..+.+....+..++. ...-...+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 2235556666666665542 222 1 1123222221 1234444555544443 11222333334444555
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 603 HGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
..++.+|+++++..++.+..+.-+...++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 6666666666666666665555554444443
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.03 E-value=2.6 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=29.5
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
...++.+++..+++.+. -+.| .+..-..-...+...|+|.+|+.+++++.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556666666666666 4466 33333334455566677777777777765
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.03 E-value=0.52 Score=43.30 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
.++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..|+++.
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555555554443
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.88 E-value=0.22 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.++..+|.+|...|++++|.+.|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35789999999999999999999999874
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.71 E-value=17 Score=39.18 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=27.8
Q ss_pred hcCChHHHHHHHHHHHHc----CCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh
Q 043580 499 MHGDANLTLKIYSDLEKR----NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS 550 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 550 (665)
..|+++.|+.+.+..... -..+....+..+..+..-.|++++|..+.....+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 456666666666555543 1122333445555555556666666666555443
No 299
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.67 E-value=4.9 Score=33.03 Aligned_cols=41 Identities=5% Similarity=0.069 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA 430 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 430 (665)
.++..+...+.+.....+++.+...+ ..+....+.++..++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 34444444444445555555444443 133333444444443
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.63 E-value=0.08 Score=30.72 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=18.2
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
.+.| |+..|..+...|...|++++|+
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3466 6777777777777777777765
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.48 E-value=0.22 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 627 RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 627 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++.+|.++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.41 E-value=5.8 Score=33.20 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=82.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHH-----hhHhhh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSI-TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCM-----VDLLGR 570 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 570 (665)
+.+.+..++|+.-|.++.+.|...-+. ............|+...|...|+++-.. .|.+....-+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 356778889999999998887544332 2223344556789999999999998754 3433333222 334567
Q ss_pred cCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 571 AGQLEDAEEVIRSMPMK--A-DVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
.|.+++....++.+... | ....-..|.-+-.+.|++.+|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 89999988888887632 3 233446677778899999999999998876
No 303
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.98 E-value=0.31 Score=30.16 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..|+.+|...|+.+.|+++++++++.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 568899999999999999999998654
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.90 E-value=0.48 Score=39.32 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=65.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhH
Q 043580 29 ALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDA 108 (665)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 108 (665)
+++.+.+.+.+....++++.+...+...+...++.++..|++.++.+...++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5677888899999999999999888778899999999999999998999998884433 4445667777777777777
Q ss_pred HHhhhcCC
Q 043580 109 REVFDKTP 116 (665)
Q Consensus 109 ~~~~~~~~ 116 (665)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77666553
No 305
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=5.8 Score=35.29 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
|..-..+|....++++|...+.+..+...+..++..-. +.++.|.-+.+++.+. .--...|+.....|...|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 33344455566666666666555543211111111111 1233444444444431 111223444555666777
Q ss_pred hHHHHHHHHHHhHhh-cCCCCC--hhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 537 LVDLGERYFKSMKSV-YNVEPD--LKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~-~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
.++.|-..+++.-+. .+++|+ ...|..-.......++...|.+++ ..+...+.+...+++|-..+
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~------------gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY------------GKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH------------HHhhhHhhhhHHhhHHHHHH
Confidence 776666666654321 034442 223333333333444444444444 44455677777777777766
Q ss_pred HHHhc------cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 614 KSLAG------LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 614 ~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+-.. -.|+....+...+-+|....++..|.+.++.--+
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 65532 2233334466666677778899999999977544
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.84 E-value=1.5 Score=40.49 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEK-----RNIKLNSITFIGVL 529 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~ 529 (665)
++..++..+...|+.+.+...++++... +.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3455777777777888888877777776 45666777788888888887777777776654 45666555544443
Q ss_pred HH
Q 043580 530 ST 531 (665)
Q Consensus 530 ~~ 531 (665)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.72 E-value=0.24 Score=28.30 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
.+-.+..++.+.|+.++|...+++++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35567888999999999999999875
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.69 E-value=1.2 Score=36.22 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=43.9
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 043580 570 RAGQLEDAEEVIRSMP-MKADVVIWGT-LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 640 (665)
..++++++..+++.+. ..|+..-... -.+.+...|++++|..+++.+.+-.|..+.....++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 4667777777777664 3343322222 233466777777777777777776666666666666666666663
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.35 E-value=1.4 Score=36.48 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=59.1
Q ss_pred hHHHHHhhHh---hhcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 559 KHYGCMVDLL---GRAGQLEDAEEVIRSMP-MKADVVIWGT-LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 559 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
.+.+.|++.. .+.++.+++..++..+. ..|....... -.+.+...|++.+|..+++.+.+-.|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4455555544 46678888988888875 4565444333 33457788999999999999888888888877888888
Q ss_pred HHhcCCh
Q 043580 634 YADAGRW 640 (665)
Q Consensus 634 ~~~~g~~ 640 (665)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 8777764
No 310
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.33 E-value=0.33 Score=40.73 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
++|+.-+++++.++|+...++..||.+|..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 344444444455555555555555555443
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.26 E-value=12 Score=34.42 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++.....|...|.+.+|.++-++++.++|-+...+..|...|...|+.-.|.+-|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 445567788999999999999999999999999999999999999999999988888743
No 312
>PRK12798 chemotaxis protein; Reviewed
Probab=91.17 E-value=16 Score=35.74 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=117.9
Q ss_pred cCCHHHHHHHHHHchhC--CCCcchHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHhcccChHH
Q 043580 467 CGSINTAFEVFYHIRDR--TTSVSPWNAIICGL-AMHGDANLTLKIYSDLEKRNIKLNS----ITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 539 (665)
.|+..++.+.+..+... ++....+-.|+.+- ....++..|+++|+...-. .|-. .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57788888888777665 44555677776654 4567888999999887653 4432 23444455667889999
Q ss_pred HHHHHHHHhHhhcCCCCChhH-HHHHhhHhhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 540 LGERYFKSMKSVYNVEPDLKH-YGCMVDLLGRA---GQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
++..+-.....+|...|-..- +..+...+.+. -..+.-..++..|...-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888877777777677774333 33333333333 34455555666665444567888888888999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHH-----hcCChhHHHHHHHHH
Q 043580 616 LAGLQPSHGPSRVLLSNIYA-----DAGRWEDAFSIRKEM 650 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~ 650 (665)
+..+.... ..-...+.+|. -..+.++|.+.+..+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 98887443 33334444443 334566666666544
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.08 E-value=0.39 Score=39.81 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHH
Q 043580 161 VISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELA 240 (665)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 240 (665)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444445555555555555555555445556666666666666666666666653222 2233455555555666665
Q ss_pred HHHHhhCCC
Q 043580 241 RELFERIPS 249 (665)
Q Consensus 241 ~~~~~~~~~ 249 (665)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 555555443
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.03 E-value=2.9 Score=35.99 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=50.8
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHh--hHHHHHHHHhccCChHHHHHHHHHHHHHh
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEV--TLASVISSSVHLGGIWECRMLHGLVIKLM 185 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (665)
..+..+...|++.|+.+.|.+.|.++.+....|... .+..+|+.+.-.+++..+..........-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467788889999999999999999998876555443 56778888888888888887777766554
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.98 E-value=25 Score=37.66 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHHHHHHhccC---CC------CCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQ---PS------HGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
.+-.|+...|...++.+.+.. |. .+..++..|..+...|+.+.|+..|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346788999999998886543 22 24446777877888899999999997
No 316
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.87 E-value=0.32 Score=26.06 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
....|+.++...|+.++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888887775
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.62 E-value=1.9 Score=37.35 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=47.6
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A 609 (665)
...|-+..|.--|.+.. .+.| -+..||.|.--+...|+++.|.+.|+... ..|. ..+...-.-++.--|+++.|
T Consensus 76 DSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 33455555555555544 4456 35556666666666666666666666654 2221 22222222233445666666
Q ss_pred HHHHHHHhccCCCCCc
Q 043580 610 ERAAKSLAGLQPSHGP 625 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~ 625 (665)
.+-+.+-.+.+|++|-
T Consensus 153 q~d~~~fYQ~D~~DPf 168 (297)
T COG4785 153 QDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHHhcCCCChH
Confidence 6666666666666653
No 318
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=1.4 Score=38.92 Aligned_cols=58 Identities=5% Similarity=-0.139 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..++...|++-++++.-...+...|++..+|+.-+++....=+.++|..-+.++++..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3445566777777777777777777777777777777777777777777777766543
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.34 E-value=8 Score=31.61 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=28.8
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK 587 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (665)
.++.+++..+++.+. -+.| ....-..-...+...|+|++|..+++++...
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 566666666666665 4455 2333333344555666777777777666533
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.15 E-value=0.54 Score=28.64 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++..|+.+|...|++++|.++++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 466788888888888888888888866
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.08 E-value=12 Score=32.32 Aligned_cols=117 Identities=9% Similarity=0.000 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCCCChHHH--HHHHHHhcccChHHHHHHHHHHhHhhcCCCCCh----hHHHHHhhHhhhcCChHHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSITF--IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDL----KHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 578 (665)
+.....+++...+-....-++ ..+...+...+++++|...++..... ..|. .+--.|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444455555553211111122 23445677889999999999987743 2222 22234667778899999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 579 EVIRSMPMKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 579 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.+++....+. .......-+..+...|+-++|...|+++++..++.+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9998876442 233344456778999999999999999998875543
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.99 E-value=1 Score=29.34 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
...+.-++.+.|++++|....+.+++.+|++..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345667889999999999999999999999887533
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.98 E-value=0.6 Score=25.99 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
|..+...+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555444
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.83 E-value=3.2 Score=35.10 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=41.7
Q ss_pred HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 540 LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
+|+.-|++.. .+.| ...++.++..+|...+.+. |+.. .....+++|...|+++.+
T Consensus 53 dAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~------------~d~~---------~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 53 DAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLT------------PDTA---------EAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---------------HH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhc------------CChH---------HHHHHHHHHHHHHHHHHh
Confidence 3444444444 4577 4577777777776544211 1110 011125677777778888
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 619 LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 619 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+|++..+...|-.. ++|-++..++...
T Consensus 109 ~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 109 EDPNNELYRKSLEMA-------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHH-------HTHHHHHHHHHHS
T ss_pred cCCCcHHHHHHHHHH-------HhhHHHHHHHHHH
Confidence 888877765555332 2455555555443
No 325
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.53 E-value=1.8 Score=37.24 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=27.4
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
.+..+..-|++.|+.+.|.+.|.++.+. ...| -...+-.++......+++..+...+.++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444445555555555555555554433 2233 1233334444444445555544444443
No 326
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.90 E-value=13 Score=31.26 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=14.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCC
Q 043580 394 YAQNEQPNMALELFHGMVDAGV 415 (665)
Q Consensus 394 ~~~~~~~~~a~~~~~~m~~~~~ 415 (665)
+++.+..++|+.-|..+.+.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~ 89 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGY 89 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCC
Confidence 3456677777777777776653
No 327
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.87 E-value=1.6 Score=43.81 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCc--hhHHHHHHHHHhc-cCCHHHHHHHHhhccC--CCc---ccHHHHHHHHHhcCCHHHHHHHHhhC
Q 043580 176 MLHGLVIKLMIDGF--VIISTNLLNMYCV-CSSLVEARSLFDEMKE--RNI---VSWNVMLNGFAKAGLVELARELFERI 247 (665)
Q Consensus 176 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~--~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (665)
.....|...|.+-. ...+..+...|.+ .|+..+|........- ++. ...-++...+-+.|...+|.-++...
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA 275 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAA 275 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehh
Confidence 34445555554332 3334455555555 5777777766655442 211 23344555566777777776666554
Q ss_pred CCC-Ce--eeHHHHHHHHhhcCChhHHHHHHHHHHHCC
Q 043580 248 PSK-DV--VSWGTMIDGYLQVERLSEALTMYRAMLCDG 282 (665)
Q Consensus 248 ~~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 282 (665)
... +. ..+-.+..+++..+.+...+..|....+.|
T Consensus 276 ~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 276 LDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred ccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 431 11 124455666667777777777777666543
No 328
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.74 E-value=1 Score=33.50 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChh
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH--GPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 641 (665)
|......+...+...|+++.|++.+-.+++.+|+. ......|..++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 55666677777777788888887777777776654 555667777777777643
No 329
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.65 E-value=22 Score=33.54 Aligned_cols=121 Identities=8% Similarity=0.059 Sum_probs=59.8
Q ss_pred hCCCchHHHHHHHHHHHCC--CCCChhH-----HHHHHHHHHccC-cHHHHHHHHHHHHHc--------CCCCCh-----
Q 043580 396 QNEQPNMALELFHGMVDAG--VKPNEIT-----MVSVFCAIASSG-TLKEGRWAHEYVLNN--------SITLND----- 454 (665)
Q Consensus 396 ~~~~~~~a~~~~~~m~~~~--~~p~~~~-----~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~----- 454 (665)
+.|+.+.|..++.+..... ..|+... +-.+.......+ +++.|...+++..+. ...++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4567777777776655432 2222211 111122223334 666666555554332 112222
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043580 455 NLSAAIIDMYAKCGSIN---TAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKR 516 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 516 (665)
.++..++.+|...+..+ +|..+++.+....|+ +.++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23445556666555443 344455555444333 344445555555566777777777777664
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.61 E-value=18 Score=38.11 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 043580 537 LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA---GQLEDAEEVIRSMPMKADVVIWGTLLAASR----IHGNVEVG 609 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A 609 (665)
+.+.|..++.+..+. | .|+.. ..+..++... .+...|.++|..+...-.......+..+|. ...+.+.|
T Consensus 308 d~~~A~~~~~~aA~~-g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-G-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-C-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 556677777766543 2 22222 2233333322 356677777777664444444444443332 23367888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHhCCCccC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNI--YADAGRWEDAFSIRKEMRDCGMKRL 658 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~ 658 (665)
..+++++.+.. ++.+...++.. +.. ++++.+.-.+..+.+.|.+..
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHH
Confidence 88888887776 33333333333 333 777777777777766665443
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.61 E-value=3.3 Score=36.89 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHH-------HHHHHHHHhccC--CCC----CchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 043580 591 VIWGTLLAASRIHGNVEV-------GERAAKSLAGLQ--PSH----GPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKR 657 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 657 (665)
..+..+.|.|...|+.+. |...|+++.+.. |.. ....+.+|.++.+.|++++|.+.+.++...+-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 445556666666666444 444445554332 222 3557789999999999999999999998865443
Q ss_pred C
Q 043580 658 L 658 (665)
Q Consensus 658 ~ 658 (665)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 3
No 332
>PRK09687 putative lyase; Provisional
Probab=88.32 E-value=23 Score=33.36 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICG 496 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 496 (665)
.+.+++..|.. +|...+..+....+|..+-...+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 44445555553 3555555554433444444433333
No 333
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.31 E-value=2.4 Score=42.58 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=56.6
Q ss_pred hcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 570 RAGQLEDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
..|+...|...+..+. .+| .......|.....+.|..-.|-.++.+.+.+....|.+++.+|.+|....+.++|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 3567777777666654 333 2334455666666666667777777777777766677777777777777777777777
Q ss_pred HHHHHhCCC
Q 043580 647 RKEMRDCGM 655 (665)
Q Consensus 647 ~~~~~~~~~ 655 (665)
++.++++..
T Consensus 699 ~~~a~~~~~ 707 (886)
T KOG4507|consen 699 FRQALKLTT 707 (886)
T ss_pred HHHHHhcCC
Confidence 777766544
No 334
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.91 E-value=39 Score=35.63 Aligned_cols=274 Identities=9% Similarity=0.004 Sum_probs=148.2
Q ss_pred HHHHHHHhhcCCC-CcchHHHHHHH-----HHhCCCchHHHHHHHHHHH-------CCCCCChhHHHHHHHHHHccC---
Q 043580 370 EDARQLFNNMQKR-DVYSWSAMISG-----YAQNEQPNMALELFHGMVD-------AGVKPNEITMVSVFCAIASSG--- 433 (665)
Q Consensus 370 ~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~--- 433 (665)
..|.+.++...+. ++..-..+..+ +....+++.|+.+|+.+.+ .|.+ .....+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCc
Confidence 3455555555433 33332222222 2344567777777777766 4422 23334444454432
Q ss_pred --cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHchhCCCCcchHHHHHHHHH----hcCChHHH
Q 043580 434 --TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK-CGSINTAFEVFYHIRDRTTSVSPWNAIICGLA----MHGDANLT 506 (665)
Q Consensus 434 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a 506 (665)
+.+.|..++....+.|.+.. ..+...+..... -.+...|.+.|......+.... +-.+..+|. ...+...|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a-~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A-~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDA-QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA-IYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchH-HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCCcCCCHHHH
Confidence 55667777777777663332 222112211122 2356778888887776533332 222333322 23477888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH---hhh----cCChHHHHH
Q 043580 507 LKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL---LGR----AGQLEDAEE 579 (665)
Q Consensus 507 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~g~~~~A~~ 579 (665)
..++++..+.| .|...--...+..+.. ++++.+.-.+..+... +..-....-..+... ... ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888887 4443333333344444 6666666555555543 322211111111111 111 235667777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-C--ChhHHHHHHHHHHh
Q 043580 580 VIRSMPMKADVVIWGTLLAASRIH----GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA-G--RWEDAFSIRKEMRD 652 (665)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~ 652 (665)
.+.+....-+......+..+|..- .+.+.|...+.++.+.. ......|+..+-.- | +...|..++.++.+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 777776666666667777665543 36888999998887766 66677777665322 1 26888888888876
Q ss_pred CC
Q 043580 653 CG 654 (665)
Q Consensus 653 ~~ 654 (665)
.+
T Consensus 538 ~~ 539 (552)
T KOG1550|consen 538 ED 539 (552)
T ss_pred cC
Confidence 44
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.91 E-value=4 Score=35.31 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=54.6
Q ss_pred HhhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCCh
Q 043580 567 LLGRAGQLEDAEEVIRSMPMKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRW 640 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 640 (665)
.+.+.|+ ++|.+.|-.+...| +....-..+..|....|.++++.++.+++++.+.+ +..+..|+.+|.+.|++
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445555 67777777776443 33333444455666888999999999998876544 56688999999999999
Q ss_pred hHHH
Q 043580 641 EDAF 644 (665)
Q Consensus 641 ~~A~ 644 (665)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 336
>PRK10941 hypothetical protein; Provisional
Probab=87.72 E-value=3 Score=38.55 Aligned_cols=61 Identities=23% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+.+-.+|.+.++++.|..+.+.++.+.|+++.-+.-.|.+|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455566777777777777777777777777776667777777777777777777666554
No 337
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.27 E-value=48 Score=35.95 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=92.3
Q ss_pred HhcCCHHHHHHHHHHchhC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH-----HHhc
Q 043580 465 AKCGSINTAFEVFYHIRDR------TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVL-----STCC 533 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-----~~~~ 533 (665)
...|+++.|.++.+..... .+....+..+..+..-.|++++|..+..+..+..-.-+...+.... ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3457778877777665554 2334556677777778888888888877665542222333222221 2234
Q ss_pred ccChH--HHHHHHHHHhHhhcC-CCC----ChhHHHHHhhHhhhcCChHHHHHHHHhC----C-CCCCH----HHHHHHH
Q 043580 534 HAGLV--DLGERYFKSMKSVYN-VEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSM----P-MKADV----VIWGTLL 597 (665)
Q Consensus 534 ~~~~~--~~a~~~~~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~~~~----~~~~~l~ 597 (665)
..|+. .+....|......+. -.| -..++..+..++.+ ++.+..-.... . ..|.+ ..+..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 45532 233333333332211 112 12334444444444 33333322222 1 11221 1223566
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCC-Cch-H---HHHHHH-H-HhcCChhHHHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSH-GPS-R---VLLSNI-Y-ADAGRWEDAFSIRKE 649 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~-~---~~l~~~-~-~~~g~~~~A~~~~~~ 649 (665)
......|+.++|...+.++..+..+. +.. | ..++++ | ...|+.++|...+.+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 77788999999999988886543333 222 1 122222 2 345787777776654
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.05 E-value=1.2 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5678888888888888888888888864
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.91 E-value=46 Score=35.40 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHhh
Q 043580 193 STNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS-KDVVSWGTMIDGYLQ 264 (665)
Q Consensus 193 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 264 (665)
....|..+...|++++|-...-.|...+...|...+..+...++......++-.-+. -+...|..++..+..
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 344566666777777777777777776666666666666666665555444433332 245567777777665
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.78 E-value=2.4 Score=36.89 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHhhHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSM-PMKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
+.-+..+.+.+.+.+|+...+.- +.+| +...-..+...++-.|+.++|..=++-+-++.|+...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 33445566777777777766543 3455 4455556666777778888887777777777777554
No 341
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.64 E-value=29 Score=32.86 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcc--c----ChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChH
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCH--A----GLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 575 (665)
++.+.+++.|.+.|+.-+..+|.+....... . ....+|..+|+.|++.+.+-. +-.++..|+-. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455677888888888777666553332222 2 234567888888887633222 23333333222 333333
Q ss_pred ----HHHHHHHhCC---C-CCCHHHHHHHHHHHHh-cCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh-HH
Q 043580 576 ----DAEEVIRSMP---M-KADVVIWGTLLAASRI-HGN--VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE-DA 643 (665)
Q Consensus 576 ----~A~~~~~~~~---~-~~~~~~~~~l~~~~~~-~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A 643 (665)
.++.+++.+. . +.+..-+.+-+-++.. ..+ ..++..+++.+.+-.-.-...++-...+++-.++.+ +.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 3333444433 2 2233233222223222 212 346666777665544333333333333455444444 66
Q ss_pred HHHHHHHHhCCCccCCCccc
Q 043580 644 FSIRKEMRDCGMKRLPGFSG 663 (665)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~ 663 (665)
.+.+.++.+. +++.+++.|
T Consensus 237 ~~~i~ev~~~-L~~~k~~~~ 255 (297)
T PF13170_consen 237 VEEIKEVIDE-LKEQKGFGW 255 (297)
T ss_pred HHHHHHHHHH-HhhCcccCh
Confidence 6666666442 445555544
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=13 Score=37.94 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=45.8
Q ss_pred HhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHH
Q 043580 465 AKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERY 544 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 544 (665)
.+.|+++.|.++..+. .+..-|..|..+..+.++...|.+.+.+..+ |..|+-.+...|+.+....+
T Consensus 648 l~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 3445555555444333 2233455555555555555555555554433 33344444444544433333
Q ss_pred HHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 545 FKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 545 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
-....+. |. -|. -..+|...|+++++.+++.+-
T Consensus 715 a~~~~~~-g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQ-GK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhh-cc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 3333332 21 111 122344556666666655544
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.37 E-value=7 Score=36.20 Aligned_cols=102 Identities=11% Similarity=0.085 Sum_probs=67.9
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 448 NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.|.+.+..+...++..-....+++++...+-+++.. .++... ...++.+ -.-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 344444445555555555567777777777766654 122111 1222222 234677888888888888999999
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
++++.++..+.+.+++.+|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999988888877666543
No 344
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.20 E-value=28 Score=32.25 Aligned_cols=66 Identities=6% Similarity=-0.050 Sum_probs=42.2
Q ss_pred CCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-hcCCchhHHHHHHHHHhccCCHHHHHHHHhh
Q 043580 150 GVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-MIDGFVIISTNLLNMYCVCSSLVEARSLFDE 215 (665)
Q Consensus 150 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 215 (665)
|-.++..+...++..++..+++..-.++++..... +...|...|...|+.....|+..-..++.++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34556666666666666667776666666666555 4556666666677777777766666555543
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.02 E-value=5 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
-++.+-+..+....+.|++......+++|.+.+++..|.++|+.++.+ +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 345555666667778888888888889998899999999988888754 2224445655543
No 346
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.68 E-value=55 Score=35.06 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 257 TMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
.+|-.+.+.|++++|.++.++.... .......|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5667778888888888888555433 455556667777777654
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.52 E-value=24 Score=31.06 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMV 565 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 565 (665)
.+..++.+.+.+...+++...++-++.+ +-|..+-..+++.+|-.|++++|..-++... .+.|+ ..+|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3445667777888888888887777763 4466677788888899999999988887776 33552 45566665
Q ss_pred hHhhhcCChHHHHH-HHHhCC-----CCCCHHHHHHHHHHHH-hc-CCHHHHHHHHHHHhccCCCCC
Q 043580 566 DLLGRAGQLEDAEE-VIRSMP-----MKADVVIWGTLLAASR-IH-GNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 566 ~~~~~~g~~~~A~~-~~~~~~-----~~~~~~~~~~l~~~~~-~~-g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.+ +.+.. +|.--. ..|.+.-...+..+.. +. |.-+.+..+-+++.+.-|..+
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 54 22222 222211 1133333334444432 33 345556666677777666543
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.38 E-value=6.8 Score=38.48 Aligned_cols=132 Identities=13% Similarity=0.085 Sum_probs=89.0
Q ss_pred HHHHHHhcCChHHHHHHHHH-HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc
Q 043580 493 IICGLAMHGDANLTLKIYSD-LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA 571 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 571 (665)
-|.--...|+...|-+-+.. +....-.|+...+... .....|+++.+...+...... +.....+..+++......
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhch
Confidence 34445567887777654444 4443334554444333 456789999999988887742 334567788888888899
Q ss_pred CChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 572 GQLEDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 572 g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
|++++|..+-+.|... .++.............|-++++....++++.++|....-+.
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 9999999998888622 34444444444456677889999999999988876554443
No 349
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.05 E-value=36 Score=32.36 Aligned_cols=116 Identities=10% Similarity=-0.068 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc-----C--ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 043580 537 LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA-----G--QLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGN 605 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 605 (665)
+..+|..+|++..+. |..+.......+...|... - +...|...+.++...-+......+...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666554 4333222233333333332 1 223566666665433344555555544432 236
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCCc
Q 043580 606 VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG---------------RWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 656 (665)
.++|...|+++-+... ......++ .+...| +...|...+......|..
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 7777777777777665 55555665 455444 666777777776665543
No 350
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.51 E-value=3.1 Score=31.33 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCC---------chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHG---------PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
..+.||+..|.+.+.+..+...... .....++.++...|++++|.+.++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577888888888877765433222 22456777888999999999999998763
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.32 E-value=12 Score=27.95 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=33.0
Q ss_pred HHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHH
Q 043580 98 GYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLAS 160 (665)
Q Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 160 (665)
.+..+|++++|..+.+....||...|-.|-. .+.|-.+.+..-+.+|..+| .|...+|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3445566666666666665555555544433 34455566666666666665 444444443
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.28 E-value=64 Score=34.65 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHhccCCCC---Cch-H-----HHHHHHHHhcCChhHHHHHHHHHH
Q 043580 603 HGNVEVGERAAKSLAGLQPSH---GPS-R-----VLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~---~~~-~-----~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
.|+..+.......+..+-... ... | ..+...|...|+.++|.+...+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 788777666666665433322 322 3 345556888999999999887764
No 353
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.19 E-value=0.78 Score=42.71 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=38.0
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHH
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV-VIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~ 610 (665)
..|.++.|++.|...+ .+.| ....|..-..++.+.+++..|+.-+.... .+||. ..|-.-..+....|+.++|.
T Consensus 126 n~G~~~~ai~~~t~ai---~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAI---ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhccccccc---ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 3455555555555555 2344 34444444555555555555555444433 22221 12222233334445555555
Q ss_pred HHHHHHhccC
Q 043580 611 RAAKSLAGLQ 620 (665)
Q Consensus 611 ~~~~~~~~~~ 620 (665)
..++.+.+++
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 5555554433
No 354
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.15 E-value=4.9 Score=30.15 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
+..+-+..+....+.|++......+.+|.+.+++..|.++|+.++.+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3445556666677788888888888888888888888888888887523 33336666554
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.46 E-value=2.1 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
..+..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778999999999999999999988764
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.39 E-value=53 Score=33.08 Aligned_cols=163 Identities=6% Similarity=0.003 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHH
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGL 497 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 497 (665)
|.....+++..+.......-.+.+-.++...| -+...+..++.+|... ..+.-..+|+++.+..-+......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33444455555555555555555555555433 2333444555555555 44455555555544322222222222222
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLN-----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG 572 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (665)
...++.+.+...|.+....=++.. ...|.-+...- ..+.+....+...+....|...-...+.-+-.-|....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 222555555555555544321110 01233332211 23455555555555554344444455555556666667
Q ss_pred ChHHHHHHHHhCC
Q 043580 573 QLEDAEEVIRSMP 585 (665)
Q Consensus 573 ~~~~A~~~~~~~~ 585 (665)
++++|++++....
T Consensus 220 N~~eai~Ilk~il 232 (711)
T COG1747 220 NWTEAIRILKHIL 232 (711)
T ss_pred CHHHHHHHHHHHh
Confidence 7777777776554
No 357
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=83.09 E-value=2.3 Score=37.22 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=31.3
Q ss_pred hhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 569 GRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+.++.+.|.+++.+.. ..| ....|-.+...-.+.|+++.|.+.+++.++++|.+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34555555666655554 212 4455555555555666666666666666666655543
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.59 E-value=11 Score=30.16 Aligned_cols=72 Identities=8% Similarity=0.002 Sum_probs=48.2
Q ss_pred CCChhHHHHHhhHhhhcCC---hHHHHHHHHhCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 555 EPDLKHYGCMVDLLGRAGQ---LEDAEEVIRSMPM--KA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.++..+--.+..++.+..+ ..+.+.+++++.. .| .......|.-++.+.++++.+.++.+.+++.+|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4555666666777766554 4455566666542 23 33445556667888888888888888888888887764
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.59 E-value=8.3 Score=30.80 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhc-cCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 587 KADVVIWGTLLAASRIHGN---VEVGERAAKSLAG-LQPSHG-PSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.++..+--.+.+++.++.+ ..+.+.+++.+.+ -.|... ...+.|+-.+.+.++|++++++.+.+++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 4666777788888887764 6778888998886 445443 4466788889999999999999999988654
No 360
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.07 E-value=5.9 Score=36.63 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=71.7
Q ss_pred HHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-----cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 043580 343 LQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR-D-----VYSWSAMISGYAQNEQPNMALELFHGMVDAGVK 416 (665)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 416 (665)
+-|..|......+...++..-....+++.++..+-.+... + ..+-.+.+..+.+ -++++++.++..=+.-|+-
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccc
Confidence 3445555555555556666656667777777777666532 1 1122233333332 3677888888888888999
Q ss_pred CChhHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 043580 417 PNEITMVSVFCAIASSGTLKEGRWAHEYVLNN 448 (665)
Q Consensus 417 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (665)
||..++..++..+.+.+++.+|..+.-.+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999988887777643
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.01 E-value=37 Score=30.30 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=31.3
Q ss_pred hhcCChHHHHHHHHhCC---CCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 569 GRAGQLEDAEEVIRSMP---MKADVVIW------GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~---~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
...+++.+|+.+|++.. ...+..-| -.-+-++...+|.-.+...+++..+++|.-..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34566777777766653 11111111 112222333467777777777777888876555
No 362
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.86 E-value=77 Score=33.86 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=21.4
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 571 AGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
.++.++|+++.++ ..|...|..|+..+...-.+-.++
T Consensus 674 l~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 674 LRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred hhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 3444444444433 367888888887776655444443
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.63 E-value=41 Score=30.58 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH---CCC--CCChhHHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCChh
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVD---AGV--KPNEITMVSVFCAIASSGTLKEGRWAHEYVLN-----NSITLNDN 455 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 455 (665)
+...++..+.+.+++++.++.|.+|.. ..+ .-+....+.++.-.+...+.+....+++.-.+ .+-..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 334456666666666666666665542 111 12233445555544444444433333332221 11111112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-----CC-C-------cchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-----TT-S-------VSPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLN 521 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~ 521 (665)
+-+.|...|...|.+.+..++++++... +. | ...|..-|..|...++-.+...++++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 2345666777777777777777766554 11 1 1246666777777777777777777665432 2233
Q ss_pred hHHHHHHHHHh-----cccChHHHHHHHHHHhHhhcCC--CCC---hhHHHHHhhHhhhcC
Q 043580 522 SITFIGVLSTC-----CHAGLVDLGERYFKSMKSVYNV--EPD---LKHYGCMVDLLGRAG 572 (665)
Q Consensus 522 ~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~~~~~~~g 572 (665)
+... .++.-| .+.|.+++|..-|-+..+.+.- .|. ..-|-.|++.+.+.|
T Consensus 227 PlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 227 PLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3333 233333 3467777766544433332111 231 122445556665554
No 364
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=14 Score=33.72 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSIT 524 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 524 (665)
+..-..+.+++++|+..+.++...|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 44455666777777777777777776666554
No 365
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.84 E-value=14 Score=27.50 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 043580 267 RLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA 316 (665)
Q Consensus 267 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 316 (665)
+.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-+...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34466777778877889999999999999999999999999999877743
No 366
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.83 E-value=65 Score=32.30 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=25.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchh
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFG 304 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 304 (665)
++.++..+++++.+...|.......++.....+.+.|...
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 5566777777777776666555555666666666655443
No 367
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.60 E-value=1.2 Score=43.71 Aligned_cols=100 Identities=7% Similarity=0.030 Sum_probs=71.0
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g 604 (665)
-+..+...+.++.|..++.+++ .+.|| ...|..-..++.+.+++..|+.=+.++. ..|. ...|..=..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 4556677788899999999888 55884 5555555677888888888887666654 3343 233444445666777
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
.+.+|...|++...+.|+++.+...+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 88888888888888999888764444
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.35 E-value=11 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 043580 589 DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A 609 (665)
++..+..|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444433
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.31 E-value=2.8 Score=22.35 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=8.4
Q ss_pred HhhHhhhcCChHHHHHHH
Q 043580 564 MVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~ 581 (665)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444444444444444
No 370
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.30 E-value=36 Score=30.94 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 043580 608 VGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLP 659 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 659 (665)
.-+++.+.++..+.++..++.+--+++..-+.++.-+.+-.++++.++.+..
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 4444555555555555555555555555555555555555555555544443
No 371
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.01 E-value=90 Score=33.46 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHHhcCChhhHHHhhhcCC---CCCcccHHHHHHHHhhc
Q 043580 94 IMISGYIRNDRLNDAREVFDKTP---IKCCVSYTSMIMGFAQN 133 (665)
Q Consensus 94 ~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 133 (665)
++|--+.|+|++++|.++..+.. ......+-..+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 35666778888888888883332 23334566666666654
No 372
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.73 E-value=15 Score=27.74 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 043580 269 SEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA 316 (665)
Q Consensus 269 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 316 (665)
-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356667777777789999999999999999999999999999888765
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.33 E-value=52 Score=30.31 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCChhH-------HHHHHHHHHccCcHHHHHH
Q 043580 390 MISGYAQNEQPNMALELFHGMVDAGVKPNEIT-------MVSVFCAIASSGTLKEGRW 440 (665)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~ 440 (665)
+.+-..+.+++++|+..+.++...|+..+..+ ...+...|...|+.....+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 34455677888999999999888887766554 3445556666666554433
No 374
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.29 E-value=26 Score=35.91 Aligned_cols=165 Identities=15% Similarity=0.072 Sum_probs=83.6
Q ss_pred CCCcchhhHHHHH-----HHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHH
Q 043580 86 TLDPVACNIMISG-----YIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLAS 160 (665)
Q Consensus 86 ~~~~~~~~~ll~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 160 (665)
+.++.+|..++.. ..-.|+++.|-.++-.++++ ..+.+...+-+.|-.++|+++ .+|...-
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r-- 643 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR-- 643 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh--
Confidence 3455555544432 33456677666666555532 234444555555555555443 2222211
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHH
Q 043580 161 VISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELA 240 (665)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 240 (665)
.....+.|+++.|.++..+. .+..-|..|.++....|++..|.+.|....+ |..|+-.+...|+-+..
T Consensus 644 -Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 644 -FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred -hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHH
Confidence 12233556666666554442 3445566677777777777777777765432 33444444445544433
Q ss_pred HHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHH
Q 043580 241 RELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAM 278 (665)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 278 (665)
..+-....+ ....|....+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~--~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKK--QGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHh--hcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 222222221 112233344566678888877776543
No 375
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.47 E-value=4 Score=26.59 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
..+.|+-++.+.|++++|+++.+.+++....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4577888999999999999999999886543
No 376
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=77.97 E-value=70 Score=31.06 Aligned_cols=98 Identities=7% Similarity=0.069 Sum_probs=67.0
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCCCCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC-------c
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMPMKA------D--VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG-------P 625 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~ 625 (665)
-..|...+-..|+.++|..++.+.+... . ....-.-+..|...+|+-.|.-+.++.....-+.+ .
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 3456777788888888888888876321 0 11112234567788889888888888754332222 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRL 658 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 658 (665)
+|..++.+....+.|=++-+.|+.+-+.|..+.
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 366777878888899999999998888776555
No 377
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.95 E-value=87 Score=33.29 Aligned_cols=185 Identities=14% Similarity=0.148 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc----------hHHHHHHHHHhcCCh
Q 043580 437 EGRWAHEYVLNNSITLND---NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS----------PWNAIICGLAMHGDA 503 (665)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~ 503 (665)
+-..++.+|+..--.|+. .+...++-.|....+++...++.+.+... |+.. .|...+.---+-||-
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccH
Confidence 334455666554333333 34445555666667777777777776665 2211 122223333345777
Q ss_pred HHHHHHHHHHHHcC--CCCChHH-----HHH--HHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC-C
Q 043580 504 NLTLKIYSDLEKRN--IKLNSIT-----FIG--VLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG-Q 573 (665)
Q Consensus 504 ~~a~~~~~~~~~~~--~~p~~~~-----~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~ 573 (665)
++|+.+.-.+.+.. +.||... |.- +-+.|...+..+.|.++|++.. .+.|+...=-.+...+...| .
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 88888777766543 4555542 221 2234555677788899988876 66886544333333343343 2
Q ss_pred hHHHHHH------HHhCC-CCCC----HHHH--HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 574 LEDAEEV------IRSMP-MKAD----VVIW--GTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 574 ~~~A~~~------~~~~~-~~~~----~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
++.-.++ +..+. .+-. ...| ...+.+-.-.+|+.+|+...+++.++.|-..-
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 3332222 11111 1111 1112 23344556678999999999999999886543
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.20 E-value=62 Score=30.05 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=77.8
Q ss_pred hcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHh----HHcCCCCCHhhHHHHHHHHhccCCh-----
Q 043580 101 RNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDM----RILGVIPNEVTLASVISSSVHLGGI----- 171 (665)
Q Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~~~~----- 171 (665)
+++++++|.+++..- ...+.+.|....|.++-..| .+.++++|......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666776665322 23344455555444443333 3345666665555555555433321
Q ss_pred HHHHHHHHHHHHHh--cCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 043580 172 WECRMLHGLVIKLM--IDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS 249 (665)
Q Consensus 172 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (665)
.-......+. +.+ ...|+.....+...|.+.|++.+|+..|-.-.+++...+..++..+...|...++--
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl------- 142 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL------- 142 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH-------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH-------
Confidence 1122333333 222 234667777888899999999999887766555554444344544444444333311
Q ss_pred CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHC
Q 043580 250 KDVVSWGTMIDGYLQVERLSEALTMYRAMLCD 281 (665)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 281 (665)
.. ...+--|...++...|...+....+.
T Consensus 143 ---fi-~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 143 ---FI-ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HH-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---HH-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 12233455567778887777666543
No 379
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.14 E-value=1.1e+02 Score=32.93 Aligned_cols=419 Identities=10% Similarity=-0.067 Sum_probs=204.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC-CCcc-cHHHHHHHHHhc
Q 043580 157 TLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE-RNIV-SWNVMLNGFAKA 234 (665)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-~~~~ll~~~~~~ 234 (665)
.|.....+ .+.|++..+.++...+....+ .....|..|.. -.....+++...+++.-.. |-.. .-...+..+.+.
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~-~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQ-DLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHh-ccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 44443333 355667766666555432211 11222222222 1123346666666665553 3222 223345556677
Q ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 043580 235 GLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIV 314 (665)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 314 (665)
+++......+..- ..+...-.....+....|+.++|....+.+=..|-. .+.....++..+.+.
T Consensus 113 ~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~-------------- 176 (644)
T PRK11619 113 EDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS-------------- 176 (644)
T ss_pred cCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc--------------
Confidence 7888777733222 234444555666777778877776666665444321 223444444444433
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchh-hHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHH
Q 043580 315 KAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIA-SWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISG 393 (665)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 393 (665)
|...+..++.. +......|+...|..+.... .++.. ....++..+. +...+..++.... ++...-..++.+
T Consensus 177 --g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l-~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~ 248 (644)
T PRK11619 177 --GKQDPLAYLER-IRLAMKAGNTGLVTYLAKQL-PADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVA 248 (644)
T ss_pred --CCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhc-ChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHH
Confidence 32222233322 34444566666666555544 22222 2223333332 2333333333321 111111111222
Q ss_pred HH--hCCCchHHHHHHHHHHHCC-CCCChh--HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 043580 394 YA--QNEQPNMALELFHGMVDAG-VKPNEI--TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG 468 (665)
Q Consensus 394 ~~--~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (665)
+. ...+.+.|..++....... ..+... ....+.......+..+++...++...... .+.....--+....+.+
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHcc
Confidence 22 2356688888888775543 333222 12233222233222444544444433222 24444555566666889
Q ss_pred CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHH--
Q 043580 469 SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYF-- 545 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-- 545 (665)
+++.+...+..|... .....-..-+..++...|+.++|..+|+++.. ..+ .|..+.. .+.|..-. ...-
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~-~~~~~~ 398 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAA--QRLGEEYP-LKIDKA 398 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHH--HHcCCCCC-CCCCCC
Confidence 999998899888765 22233344566776778999999999988743 221 2322221 11221100 0000
Q ss_pred HHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043580 546 KSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSL 616 (665)
Q Consensus 546 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (665)
..-.. .+ +.... -.-+..+...|+...|...+..+....+......+.......|..+.++....+.
T Consensus 399 ~~~~~--~~-~~~~~-~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 399 PKPDS--AL-TQGPE-MARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred Cchhh--hh-ccChH-HHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00000 00 00011 1223455577888888888877665556666666666667788888887777654
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.08 E-value=48 Score=30.72 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=29.6
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
+.....|..+|.+.+|.++.++.. .+.| +...+..|+..+...|+--.|.+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~l---tldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRAL---TLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHh---hcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334445555566666666555555 3455 5555555555555555544444444433
No 381
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.48 E-value=20 Score=28.83 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=18.1
Q ss_pred cchhhhHhhhhhhhcCCCCCCHHHHHHHHHHhhc
Q 043580 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSA 35 (665)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 35 (665)
|++.|..-.....++-+.......+..++..|.+
T Consensus 21 PL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~ 54 (126)
T PF08311_consen 21 PLDPWLRYIKWIEENYPSGGKQSGLLELLERCIR 54 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHH
Confidence 7777766666655554443333444445544443
No 382
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.78 E-value=32 Score=25.94 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
+..+...|++++|..+.+....||...|-++.. .+.|..+....-+.+|...| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345677788888888888887777777766543 35666666666676777666 4444444
No 383
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.77 E-value=85 Score=30.88 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhh-hcCChHHHHHHHHhC
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLG-RAGQLEDAEEVIRSM 584 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 584 (665)
+..+.+.|-+..|.++.+-+. .+.| |+.....+|+.|+ +.++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 344555566666666666655 3344 3444444455543 445555555555543
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.25 E-value=70 Score=29.20 Aligned_cols=188 Identities=12% Similarity=0.117 Sum_probs=115.2
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhH---HHHHHHHHHccCcHHHHHHHHHHHHH---cCC--CCChhHHHHHHHHHHhcC
Q 043580 397 NEQPNMALELFHGMVDAGVKPNEIT---MVSVFCAIASSGTLKEGRWAHEYVLN---NSI--TLNDNLSAAIIDMYAKCG 468 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~ 468 (665)
...+++|+.-|++..+......... +..++....+.+++++....+..+.. ..+ .-+....+.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3567888888888776432333333 34557778889999998888887752 222 233455677777666666
Q ss_pred CHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCC-------hHHHHHHHH
Q 043580 469 SINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI----KLN-------SITFIGVLS 530 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~-------~~~~~~l~~ 530 (665)
+.+--.++++.-... ..+ ..+-..|...|...+.+.+..++++++...-. ..| ...|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666655555443222 122 22345577778888888888888888764321 111 235666677
Q ss_pred HhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHh----hHhhhcCChHHHHH-HHHhC
Q 043580 531 TCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMV----DLLGRAGQLEDAEE-VIRSM 584 (665)
Q Consensus 531 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~-~~~~~ 584 (665)
.|....+-.....++++...-...-|.+.+...+- ....+.|++++|-. +|+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 77777777777777777654324456665555442 33557788888764 44443
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.84 E-value=30 Score=31.78 Aligned_cols=86 Identities=9% Similarity=-0.045 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc---
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRT--TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH--- 534 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 534 (665)
=|.+++..+++.++....-.--+.+ -.+.....-|-.|.+.+.+..+.++-.......-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4677778888887765544333331 12234444455677788888777777776653222233456666655544
Q ss_pred --cChHHHHHHHH
Q 043580 535 --AGLVDLGERYF 545 (665)
Q Consensus 535 --~~~~~~a~~~~ 545 (665)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 67788887766
No 386
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=1.2e+02 Score=31.40 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=77.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc-ccChHHHHHHHHHHhHhhc--CCCCChhHHHHHhhHhhh
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC-HAGLVDLGERYFKSMKSVY--NVEPDLKHYGCMVDLLGR 570 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~ 570 (665)
+..+.+.|-+..|.++.+-+......-|+.....+|..|+ +..++.-.+++++...... ..-||...-.+|+..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3445566777777777777777543335666666666664 5666777777776664321 233454444445555554
Q ss_pred cCC---hHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--ccCCCCCchHHHHHHHHHhcC----Ch
Q 043580 571 AGQ---LEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLA--GLQPSHGPSRVLLSNIYADAG----RW 640 (665)
Q Consensus 571 ~g~---~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g----~~ 640 (665)
... -..|...+.++. ..| .....|+..+.-..+ |..---+.. ...-...+++.++..+|+... +.
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P--~vl~eLld~~~l~~d---a~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~ 503 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP--LVLSELLDELLLGDD---ALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKL 503 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc--HHHHHHHHhccCCch---hhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcC
Confidence 443 334444444443 112 222233333222111 111111111 111223455888888887765 34
Q ss_pred hHHHHHHHHHHh
Q 043580 641 EDAFSIRKEMRD 652 (665)
Q Consensus 641 ~~A~~~~~~~~~ 652 (665)
.+++..++.+.+
T Consensus 504 P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 504 PDVLSFLESAYH 515 (665)
T ss_pred hHHHHHHHHHHH
Confidence 556666666555
No 387
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=73.40 E-value=17 Score=29.02 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=49.4
Q ss_pred cchhhhHhhhhhhhcCCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 043580 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMF 81 (665)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (665)
|++.|..-......+-+.......+..+|.-|.+. |... ...+-|+.-...=+ -|+. ..+++..+|
T Consensus 21 PL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~---------f~~~--~~YknD~RyLkiWi-~ya~--~~~dp~~if 86 (125)
T smart00777 21 PLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRY---------FEDD--ERYKNDPRYLKIWL-KYAD--NCDEPRELF 86 (125)
T ss_pred ChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHH---------hhhh--hhhcCCHHHHHHHH-HHHH--hcCCHHHHH
Confidence 77788776666665554333345566676666653 1110 11222322111111 1111 123356666
Q ss_pred hhcCCCCcc-----hhhHHHHHHHhcCChhhHHHhhh
Q 043580 82 DSCSTLDPV-----ACNIMISGYIRNDRLNDAREVFD 113 (665)
Q Consensus 82 ~~~~~~~~~-----~~~~ll~~~~~~~~~~~A~~~~~ 113 (665)
..|...... .|......+-..|++.+|.++|+
T Consensus 87 ~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 87 QFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666655433 34444455667788888888775
No 388
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.03 E-value=85 Score=29.62 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhccCCCCCchHHHH
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
..|.+.+.++++.+|..|.+..-+
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHH
Confidence 457888899999999988865443
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.77 E-value=47 Score=32.94 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHchhC-CCCcc--hHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 043580 463 MYAKCGSINTAFEVFYHIRDR-TTSVS--PWNAIICGLA--MHGDANLTLKIYSDLEKR 516 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 516 (665)
.+.+.+++..|.++|+.+... +++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344666666666666666654 22222 2333334443 344556666666655543
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.35 E-value=7.7 Score=27.61 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCchHH---HHHHHHHhcCChhHHHHHH
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGPSRV---LLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 647 (665)
....+.++|+..++++++..++.+.-+. .|+.+|+..|++++++++-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788888888777666554433 4555677778887777663
No 391
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=71.96 E-value=1.1e+02 Score=30.39 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred CcchhhhHhhhhhhhcCCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHH
Q 043580 1 TPLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSM 80 (665)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (665)
+|-.-....+|....+..+..--.-.|..+.-|...|+..+|-++.+.+-..- -.+...-.+|+.+....-.-.....+
T Consensus 192 p~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L~vsf-fhhe~vkralv~ame~~~ae~l~l~l 270 (645)
T KOG0403|consen 192 PHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRELGVSF-FHHEGVKRALVDAMEDALAEGLTLKL 270 (645)
T ss_pred CchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHhhhhcccceecc
Q ss_pred HhhcCCCCcchhhHHHHHHHhc---------------------------CChhhHHHhhhcCCCCCc--------ccHHH
Q 043580 81 FDSCSTLDPVACNIMISGYIRN---------------------------DRLNDAREVFDKTPIKCC--------VSYTS 125 (665)
Q Consensus 81 ~~~~~~~~~~~~~~ll~~~~~~---------------------------~~~~~A~~~~~~~~~~~~--------~~~~~ 125 (665)
+.+..+.+..+-+.+.+++.|. |.|..+-.+.+....+.. .....
T Consensus 271 lke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~ 350 (645)
T KOG0403|consen 271 LKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTP 350 (645)
T ss_pred chhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHH
Q ss_pred HHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHH------------
Q 043580 126 MIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIIS------------ 193 (665)
Q Consensus 126 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 193 (665)
+|+-|...|+..+..+.++++---...|-..-+..-+..=.+...-+.|-.++..+--.-+.+.-..-
T Consensus 351 IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedt 430 (645)
T KOG0403|consen 351 IIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDT 430 (645)
T ss_pred HHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhh
Q ss_pred --------------------------------------------------------------------------------
Q 043580 194 -------------------------------------------------------------------------------- 193 (665)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (665)
T Consensus 431 ALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kd 510 (645)
T KOG0403|consen 431 ALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKD 510 (645)
T ss_pred hccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHH
Q ss_pred --HHHHHHHhccCCHHHHHHHHhhccCC---CcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhh
Q 043580 194 --TNLLNMYCVCSSLVEARSLFDEMKER---NIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQ 264 (665)
Q Consensus 194 --~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 264 (665)
..|+.-|...|++.+|.++++++.-| ..+.+.+++.+.-+.|+-+..+.+++..-.....|-+.|-.+|.+
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.47 E-value=1.7e+02 Score=32.48 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 578888888888999999998888776
No 393
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.10 E-value=1e+02 Score=30.30 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC-CCchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPS-HGPSRVLLSNIYA-DAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 652 (665)
.+..+.+.|-+..|.++.+-++.++|. +|......+..|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345667889999999999999999998 6665555556554 55677777777776554
No 394
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.90 E-value=80 Score=31.70 Aligned_cols=107 Identities=7% Similarity=-0.109 Sum_probs=64.6
Q ss_pred hcccChHHHHHHHHHHhHhh--cCC--CC---ChhHHHHHhhHhhhcCChHHHHHHHHhCC----------CCC------
Q 043580 532 CCHAGLVDLGERYFKSMKSV--YNV--EP---DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----------MKA------ 588 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~--~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~------ 588 (665)
+.-.|++..|.+++-..--. .|. .| +-..+|.|.-++.+.|.+.-+..+|.++. .+|
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44567777777776654211 121 12 11223556556666777666666665543 111
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 589 ----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 589 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
........+-.+...|+.-.|.+.|.+++...-.+|..|..|+.+|....
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 22334455566777888888888888888888888888888887776543
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.84 E-value=28 Score=28.54 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=57.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCC-hH
Q 043580 59 FIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDC-WR 137 (665)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~ 137 (665)
...|+++.-.+..++.....++++.+...++..+. | ..+...|++++.+.++... --
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~---------~-------------~~~~ssf~~if~SlsnSsSaK~ 97 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNII---------G-------------WLDNSSFHIIFKSLSNSSSAKL 97 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh---------h-------------hcccchHHHHHHHHccChHHHH
Confidence 34567777777777777777776666221110000 0 1234567777777765554 34
Q ss_pred HHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCC
Q 043580 138 EALEVFRDMRILGVIPNEVTLASVISSSVHLGG 170 (665)
Q Consensus 138 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 170 (665)
-+..+|..|++.+.+++..-|..+|.++.+...
T Consensus 98 ~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 98 TSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 567888888888889999999999988876543
No 396
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.57 E-value=25 Score=34.71 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 623 HGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+.+.++++|-+|...++|.+|.+.|..+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666554
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.38 E-value=7.8 Score=21.53 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777666554
No 398
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.61 E-value=6.8 Score=36.06 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 602 IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+.|+.|+|..+++.++.+.|+++......|...-..++.-+|-++|-++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 4455555555555555555555555555554444444455555544333
No 399
>PRK10941 hypothetical protein; Provisional
Probab=69.47 E-value=27 Score=32.49 Aligned_cols=67 Identities=12% Similarity=-0.064 Sum_probs=50.9
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.+.+-.+|.+.++++.|+.+.+.+. ..| ++.-+..-+-.|.+.|....|..-++..++..|+++.+-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3445566778888888888888875 334 566677777778888888888888888888888887753
No 400
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.43 E-value=15 Score=21.55 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=8.3
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 043580 595 TLLAASRIHGNVEVGERA 612 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~ 612 (665)
.+...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344444455555555555
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.10 E-value=3e+02 Score=34.28 Aligned_cols=107 Identities=12% Similarity=0.006 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCC--------CHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKA--------DVVI 592 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--------~~~~ 592 (665)
.+|....+...+.|.++.|...+-...+. + -+..+--.++.+...|+...|+.++++.. ..| .+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 34555555555566666666555544432 1 22334445555666666666666665543 001 1111
Q ss_pred HHHHHHH--------H-HhcCC--HHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 593 WGTLLAA--------S-RIHGN--VEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 593 ~~~l~~~--------~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
-+.++.. | ...|+ .+.-++.|..+.+..|.....+++||.-
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 1111111 1 12333 3555667777778888666666666643
No 402
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=68.74 E-value=1.3e+02 Score=29.82 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=44.2
Q ss_pred CCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCH--HHHHHHH---HH-----HHhcCCHHHHHHHHHHHh-ccCC
Q 043580 553 NVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADV--VIWGTLL---AA-----SRIHGNVEVGERAAKSLA-GLQP 621 (665)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~---~~-----~~~~g~~~~A~~~~~~~~-~~~p 621 (665)
.+.||..+.+.+...++..-..+-...+++-.....|+ ..+..++ .+ -.++..-|+++++++.+- .++-
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~ 257 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSV 257 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhccc
Confidence 56677777776666666666666666665554433222 2222222 11 123344566666666652 4555
Q ss_pred CCCchHHHHHHHHH
Q 043580 622 SHGPSRVLLSNIYA 635 (665)
Q Consensus 622 ~~~~~~~~l~~~~~ 635 (665)
++.+-+..|++-|+
T Consensus 258 eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 258 EDVPDFFSLAQYYS 271 (669)
T ss_pred ccchhHHHHHHHHh
Confidence 55555666666554
No 403
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.73 E-value=11 Score=23.41 Aligned_cols=26 Identities=15% Similarity=0.417 Sum_probs=17.4
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHCC
Q 043580 257 TMIDGYLQVERLSEALTMYRAMLCDG 282 (665)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~m~~~g 282 (665)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35666777777777777777776543
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.73 E-value=41 Score=26.06 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
-|..|+..|...|..++|+++|.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888888888888877
No 405
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=67.19 E-value=2.3e+02 Score=32.28 Aligned_cols=255 Identities=11% Similarity=-0.047 Sum_probs=116.1
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 043580 374 QLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLN 453 (665)
Q Consensus 374 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 453 (665)
.+...+.++++.+-...+..+.+.+. +.+...+..+.+ .++...-...+.++...+........+..+... ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444555666666666666665554 334344444432 222222223333332221111111122222221 44
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..+-...+..+...+..+ ...+...+.. ++...-...+.++.+.+..+. +..... .++...-...+.++.
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D--~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGD--PDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLA 767 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcC--CCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHH
Confidence 444444455544332111 1222232222 444444445555555444322 112222 455555555566665
Q ss_pred ccChHHH-HHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 534 HAGLVDL-GERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 534 ~~~~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
..+..+. +...+..+.+ .++...-...+..+...|....+...+..+...++...-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5554332 2333444432 355666666677777777655554445555555666555666666666655 345555
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+..+++ +| +......-+.++.+.+....+...+..+++
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555543 22 223344444555554334456666655544
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.18 E-value=11 Score=33.25 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=31.6
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
..+.++.+.+.+++.+.. ++.| ....|-.+...-.+.|+++.|.+.+++..
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 344566666666666665 4455 56666666666666666666666666654
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.10 E-value=10 Score=37.49 Aligned_cols=103 Identities=10% Similarity=-0.006 Sum_probs=74.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNS-ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
+..+...++++.|..++.+.++. .||. ..|..-..++.+.+++..|..-+..+.+ ..| ....|-.-..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 34556678899999999999985 6644 4455555788999999999998888874 467 456666666677777
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 043580 572 GQLEDAEEVIRSMP-MKADVVIWGTLLAASR 601 (665)
Q Consensus 572 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~ 601 (665)
+++.+|...|+... ..|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 88888888888765 5576655555554443
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.06 E-value=50 Score=24.56 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+++.++.+|++....+.|+..+...|++++|++.+-++..
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555544455555555555555555554444443
No 409
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=66.43 E-value=38 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.034 Sum_probs=31.6
Q ss_pred HHHHHHhcCCHHHHHH-------HHHHHhccCCCCCchH----HHHHHHHHhcCChhHHHHHHHHHH
Q 043580 596 LLAASRIHGNVEVGER-------AAKSLAGLQPSHGPSR----VLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~-------~~~~~~~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
|..++...|++++++. +|++--+++.+....| +.-+.++...|+.++|++.|+..-
T Consensus 61 Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 61 LSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3344444555444443 3333345666665443 455667888999999999988663
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.21 E-value=58 Score=24.99 Aligned_cols=76 Identities=7% Similarity=-0.005 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhHHHhhhcCC
Q 043580 38 AVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTP 116 (665)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 116 (665)
+.++|..+.+.+.+.+- ....+--.-+..+...|++++|...=.....||..+|.+|-. .+.|--+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45667777777666652 222222233445556666666633333334455555544422 24455555555444443
No 411
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.66 E-value=29 Score=32.75 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=65.6
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP----MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
..|.-=.+-|.+..++..|...|.+-. ..| +...|..-..+-...|++-.|+.=..+++.++|.+...+..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344445667778888888888887764 112 34556666666677888888888888888899998888888888
Q ss_pred HHHhcCChhHHHHHHHH
Q 043580 633 IYADAGRWEDAFSIRKE 649 (665)
Q Consensus 633 ~~~~~g~~~~A~~~~~~ 649 (665)
++....++++|....++
T Consensus 162 c~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888886555554443
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.35 E-value=22 Score=30.25 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
..|.+.|.+++|.+++++..+ +|++......|..+-.+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 344555555555555555555 44444443334333333
No 413
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.09 E-value=55 Score=26.94 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=41.3
Q ss_pred CeeeHHHHHHHHhhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccc
Q 043580 251 DVVSWGTMIDGYLQVER-LSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMA 302 (665)
Q Consensus 251 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 302 (665)
+-..|.+++.+..+..- ---+..+|+-|++.+.++++.-|..+|.++.+...
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 46788899999876655 44577888999888899999999999998876533
No 414
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.83 E-value=1.4e+02 Score=28.90 Aligned_cols=146 Identities=13% Similarity=0.083 Sum_probs=88.6
Q ss_pred HHHHchhCCCCcchHHHHHHHHHhc---CC---------hHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHH
Q 043580 476 VFYHIRDRTTSVSPWNAIICGLAMH---GD---------ANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 476 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~---------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
+=+.+...+.|+.+|-.++..--.. +. .+.-+.++++.++.+ +.+...+..++..+.+..+.+...+
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344455567788888887543222 11 345567788877773 4566677777888888888888888
Q ss_pred HHHHhHhhcCCCC-ChhHHHHHhhHhhh---cCChHHHHHHHHhCC-------CCC----------CHHH---HHHHHHH
Q 043580 544 YFKSMKSVYNVEP-DLKHYGCMVDLLGR---AGQLEDAEEVIRSMP-------MKA----------DVVI---WGTLLAA 599 (665)
Q Consensus 544 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-------~~~----------~~~~---~~~l~~~ 599 (665)
-++++... .| +...|...++.... .-.++....+|.+.. ... .... +..+..-
T Consensus 87 ~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 87 KWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 88888754 56 67777776665543 234566666665543 121 0111 1122222
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
+...|..+.|..+++-+++++--.|.
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 34677778888887777776654444
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.55 E-value=29 Score=25.37 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=15.8
Q ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCCh
Q 043580 235 GLVELARELFERIPSKDVVSWGTMIDGYLQVERL 268 (665)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (665)
|+.+.|.++++.++ .....|..++.++-..|+-
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 44444444444444 3344455555555544443
No 416
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.53 E-value=16 Score=26.07 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=21.3
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHH
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 580 (665)
..++.++|+..|....+...-.| -..++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554311111 133344455555555555555443
No 417
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.46 E-value=22 Score=36.61 Aligned_cols=60 Identities=7% Similarity=0.106 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 594 GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
..+.-+|....+.++|.++++++-+.+|.++-.-.....+...-|+-++|+.+.......
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 344444555556666666666666666665555444555555556666666665555443
No 418
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=64.22 E-value=1.5e+02 Score=29.11 Aligned_cols=92 Identities=9% Similarity=0.011 Sum_probs=47.0
Q ss_pred HhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCCCC--CCHHHH----HHHHHHH
Q 043580 531 TCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMPMK--ADVVIW----GTLLAAS 600 (665)
Q Consensus 531 ~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~----~~l~~~~ 600 (665)
++...|+...-...+......-.+.-| ....|.|++.|...+.++.|..+..+...+ .+..-| ..++...
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk 257 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK 257 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH
Confidence 444455544444444433322122222 334555666666677777777777666522 111111 2223333
Q ss_pred HhcCCHHHHHHHHHHHhccCCC
Q 043580 601 RIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.-.+++..|.+.+-+++...|.
T Consensus 258 aiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 258 AIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhcchhHHHHHHHHHHHhCcc
Confidence 4566777777777777666664
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.16 E-value=1.8e+02 Score=29.89 Aligned_cols=68 Identities=21% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhcc------CC-CCCchHHHHHHHHHhcCC-hhHHHHHHHHHHhCC
Q 043580 587 KADVVIWGTLLAA--SRIHGNVEVGERAAKSLAGL------QP-SHGPSRVLLSNIYADAGR-WEDAFSIRKEMRDCG 654 (665)
Q Consensus 587 ~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 654 (665)
.+|......++.+ +...|+.+.|...++..++. +| -.|.+++-|+.+|+..|. .+++.+++.++++-+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 4566666666655 45789999999999887632 22 125568899999999998 999999999998754
No 420
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=63.81 E-value=35 Score=26.43 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
-.+.+.+.++..+.|.....++.|++-+...-.|+++.+--++.+
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 346777888889999998878888777666666777666555443
No 421
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.75 E-value=1.7e+02 Score=29.52 Aligned_cols=115 Identities=11% Similarity=0.007 Sum_probs=59.7
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhcCCchHHHHHHhhcCCCCc---chhhHHHHHHHhcCChh
Q 043580 32 YCSAHIAVSQGQQIHSLIFKSGLESNTFI--QNSLINLYAKCGLISQAKSMFDSCSTLDP---VACNIMISGYIRNDRLN 106 (665)
Q Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~ 106 (665)
.....|+.+. .+.+++.|..|+... ..+.+...+..|+.+-+.-+++....++. ...+ -+...++.|+.+
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~ 82 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVK 82 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHH
Confidence 3444566544 444555677665532 33455566677888877777776554432 2222 344455678877
Q ss_pred hHHHhhhcCCCCCc---ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCH
Q 043580 107 DAREVFDKTPIKCC---VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNE 155 (665)
Q Consensus 107 ~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 155 (665)
.+..+++.-...+. ..-.+.+...+..|+. ++++.+.+.|..|+.
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~ 130 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDI 130 (413)
T ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCC
Confidence 77777765432111 0112233334445554 344455555655543
No 422
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.33 E-value=78 Score=29.28 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=38.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHC--CCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----
Q 043580 391 ISGYAQNEQPNMALELFHGMVDA--GVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMY---- 464 (665)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 464 (665)
|++++..+++.+++...-+--+. .++|. ....-|-.|.+.+.+..+.++-.......-.-+..-|.++++.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45556666666665544333221 12222 22223334455555555555544444322222222344444433
Q ss_pred -HhcCCHHHHHHHH
Q 043580 465 -AKCGSINTAFEVF 477 (665)
Q Consensus 465 -~~~~~~~~A~~~~ 477 (665)
.=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 3356666666655
No 423
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.51 E-value=2.4e+02 Score=30.94 Aligned_cols=258 Identities=12% Similarity=0.110 Sum_probs=125.8
Q ss_pred HHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 196 LLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 196 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
+=..|...|+++.|.++-+.-++--..++..-...+.+.+++..|-+++-++ ...|..+.--+....+.+ ++..|
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHH
Confidence 3456778888999888766542111113333445566778888888888777 344555555566666655 44444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHh------hcccchh----hHHHHHHHHHH---------hCCCCchhHHHHHHHHHHhcC
Q 043580 276 RAMLCDGIAPNDVMIVDLISAC------GRAMAFG----EGLQIHSIIVK---------AGFDCYDFIQATIIHFYAACG 336 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~------~~~~~~~----~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g 336 (665)
-.=+-..++|...+-..++..+ .+.++++ .+...++.-.+ .....+.....++...+...|
T Consensus 439 L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 439 LDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 3323333666555443332221 1222222 22222221111 111122223334444445555
Q ss_pred ChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 043580 337 RINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVK 416 (665)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 416 (665)
+.+....+-. =...|..++..+...+.+++|++++.....+ ..+....-.+. ...+......+..+.. .
T Consensus 519 ~~e~ll~fA~-----l~~d~~~vv~~~~q~e~yeeaLevL~~~~~~--el~yk~ap~Li-~~~p~~tV~~wm~~~d---~ 587 (911)
T KOG2034|consen 519 RQEELLQFAN-----LIKDYEFVVSYWIQQENYEEALEVLLNQRNP--ELFYKYAPELI-THSPKETVSAWMAQKD---L 587 (911)
T ss_pred CHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccch--hhHHHhhhHHH-hcCcHHHHHHHHHccc---c
Confidence 5554432211 1234667777788888888888888776433 22111111111 1223333333322222 2
Q ss_pred CChhHHHHHHHHHHcc---CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 043580 417 PNEITMVSVFCAIASS---GTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGS 469 (665)
Q Consensus 417 p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (665)
....-...++..+.+. .....+..+++.....-...++..++.++..|.+..+
T Consensus 588 ~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 588 DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 2222333444444443 2333455555555544445667777877777775543
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.77 E-value=61 Score=23.78 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHH
Q 043580 175 RMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELAR 241 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 241 (665)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +....|..++.++-..|.-.-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 344455555442 222222223222235577888888888888 77778888888888777765554
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.07 E-value=26 Score=30.75 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
|++..+..++.++...|+.++|....+++..+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.80 E-value=17 Score=33.80 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=40.7
Q ss_pred cCCCCCCHHH-HHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHH
Q 043580 16 NLQNSDYELA-LVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLI 65 (665)
Q Consensus 16 ~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 65 (665)
..++.|+..+ |+..|+...+.||.+.|++++++..+.|+..-..+|-..+
T Consensus 249 ~~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 249 SEPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CCccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4556677777 7899999999999999999999999999776666554433
No 427
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.48 E-value=96 Score=27.98 Aligned_cols=120 Identities=5% Similarity=-0.091 Sum_probs=75.7
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH-HHHHHHHhcccChHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVSP-WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSIT-FIGVLSTCCHAGLVDL 540 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~ 540 (665)
.|....+++.|...+.+.....|++.+ |..-+.++.+.++++.+..--.+.++ +.||..- ...+..+......++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 456667888899988888877677654 55677778888888888877776666 4676653 4444555667778888
Q ss_pred HHHHHHHhHhhc---CCCCChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 541 GERYFKSMKSVY---NVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 541 a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
|+..+.+..+.. .+.|-..+...|..+=-..-...+...+.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 988888874432 23333444544444433333334444444444
No 428
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.34 E-value=34 Score=30.07 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=41.3
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
..+......++.+......+.+.+.....|++..|..++.++...|+.++|.+..+++.
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333345555555554444444433668999999999999999999999999988875
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.15 E-value=1.8e+02 Score=29.48 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=32.4
Q ss_pred cHHHHHHHHhh---cCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccC
Q 043580 122 SYTSMIMGFAQ---NDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLG 169 (665)
Q Consensus 122 ~~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 169 (665)
.+..++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555554 4789999999999999988777665555555544333
No 430
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.82 E-value=1.6e+02 Score=27.36 Aligned_cols=159 Identities=14% Similarity=0.017 Sum_probs=80.7
Q ss_pred hcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHhhcccchh-hHH
Q 043580 233 KAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTM----YRAMLCDGIAPNDVMIVDLISACGRAMAFG-EGL 307 (665)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 307 (665)
+++++++|++++.. =...+.+.|+...|-++ ++-..+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 35566666666532 12334555665544443 333344566667666555555554332211 222
Q ss_pred HHHHHHHH---h--CCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 043580 308 QIHSIIVK---A--GFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR 382 (665)
Q Consensus 308 ~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 382 (665)
++.+.+.+ . .-..++.....+...|.+.|++..|+..|-.+-.++...+..++......|...++--+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf------- 143 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF------- 143 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH-------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH-------
Confidence 23333322 2 22346677888888999999999999888777666666654455444444444433111
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDA 413 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 413 (665)
. ...+-.|...++...|...++...+.
T Consensus 144 ---i-~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 144 ---I-ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---H-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---H-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 22333455667888888877766654
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.41 E-value=44 Score=21.21 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=24.0
Q ss_pred HhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043580 262 YLQVERLSEALTMYRAMLCDGIAPNDVMIVDLIS 295 (665)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 295 (665)
..+.|-..++..++++|.+.|+..++..+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456667777778888877777777777666654
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.01 E-value=47 Score=28.44 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=13.0
Q ss_pred HHHHHHhcCCchHHHHHHhhcCC
Q 043580 64 LINLYAKCGLISQAKSMFDSCST 86 (665)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~ 86 (665)
.+..|.+.|.+++|.++++...+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34455566666666666655543
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.74 E-value=91 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=22.9
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHhHH
Q 043580 122 SYTSMIMGFAQNDCWREALEVFRDMRI 148 (665)
Q Consensus 122 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 148 (665)
-|..|+..|...|.+++|++++....+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888999999999988876
No 434
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.45 E-value=2e+02 Score=27.89 Aligned_cols=75 Identities=9% Similarity=-0.078 Sum_probs=35.0
Q ss_pred HHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc---cChHHHHHHHHHHhH
Q 043580 474 FEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH---AGLVDLGERYFKSMK 549 (665)
Q Consensus 474 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 549 (665)
+.++++..+. +.+...+..++..+.+..+.+...+.|+++.... +-+...|...+..... .-.++....+|.+..
T Consensus 51 lsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 51 LSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 3444444443 2233344555555555555555556666665542 2234444444443322 223445555554443
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.58 E-value=1.5e+02 Score=26.99 Aligned_cols=50 Identities=26% Similarity=0.168 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhc-----cCCCCCchHHH---HH-HHHHhcCChhHHHHHHHHHHhCCC
Q 043580 606 VEVGERAAKSLAG-----LQPSHGPSRVL---LS-NIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 606 ~~~A~~~~~~~~~-----~~p~~~~~~~~---l~-~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+.|...|+++.+ +.|.+|...-. .+ ..|-..|+.++|.++.+++.+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4667777777743 56666654221 11 124567899999888887766443
No 436
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.03 E-value=60 Score=25.74 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHh
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMV 565 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 565 (665)
..+-+..+..-.+.|++......+.+|.+.+|+..|.++|+.++.+ +.+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3344555566677888888888888888888888888888888764 333223454444
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.99 E-value=93 Score=24.98 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=27.1
Q ss_pred HHHHHHHHHh--ccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 608 VGERAAKSLA--GLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 608 ~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
.+..+|+.+. ++.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666664 34455556666777777777777777777754
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.67 E-value=18 Score=24.58 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=8.7
Q ss_pred HHHHhcccChHHHHHHHHHHh
Q 043580 528 VLSTCCHAGLVDLGERYFKSM 548 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~ 548 (665)
++.++...|++++|.++.+.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.61 E-value=60 Score=26.85 Aligned_cols=64 Identities=8% Similarity=-0.028 Sum_probs=45.3
Q ss_pred HHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 141 EVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 141 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
++.+.+++.|++++..- ..+++.+...++.-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 45566777888776653 35677777777778888899998888877776666556666666653
No 440
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.59 E-value=1.4e+02 Score=28.34 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 580 (665)
++.+....++..+++.+..| +++.+.+...+..|...++.|... +..++++--+.
T Consensus 36 ~~~~~~e~l~~~Ird~~Map-----------------------~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~ 90 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP-----------------------LYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEK 90 (393)
T ss_pred cCHHHHHHHHHHHHhcccch-----------------------HHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHH
Q ss_pred HHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------hccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 581 IRSMP----MKADVVIWGTLLAASRIHGNVEVGERAAKSL------AGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 581 ~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.++.. ..--...+.....-|++-||-+.|.+.+++. .+..-+-.-....||-.|....-..+-++..+.+
T Consensus 91 iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~l 170 (393)
T KOG0687|consen 91 IEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSL 170 (393)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Q ss_pred HhCCCc
Q 043580 651 RDCGMK 656 (665)
Q Consensus 651 ~~~~~~ 656 (665)
.+.|..
T Consensus 171 iE~GgD 176 (393)
T KOG0687|consen 171 IEEGGD 176 (393)
T ss_pred HHhCCC
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.64 E-value=31 Score=37.12 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=20.1
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043580 570 RAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSL 616 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (665)
.+|+++.|++..+++ .+..+|..|+......|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 444444444444433 23444444444444444444444444443
No 442
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=53.34 E-value=34 Score=20.47 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+..||.+-...++++.|.+=|++.++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5778889999999999999888888764
No 443
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.33 E-value=93 Score=28.08 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCc
Q 043580 602 IHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
..++...|..+++++.+++|+...
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCCh
Confidence 345778999999999999998665
No 444
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.25 E-value=2.7e+02 Score=28.46 Aligned_cols=242 Identities=10% Similarity=0.017 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHccC------cHHHHHHHHHHHHHc-CCCCC-hhHHHHHHHHHHhcCCHHH-
Q 043580 402 MALELFHGMVDAGVKPNEITMVSVFCAIASSG------TLKEGRWAHEYVLNN-SITLN-DNLSAAIIDMYAKCGSINT- 472 (665)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~- 472 (665)
....+|++..+ ..|+...+...|..|...- .+.....+++...+. +..++ ...|..+.-.+.......+
T Consensus 300 ~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 34456666555 2445555555555553321 334445555555443 22332 2455555555554443333
Q ss_pred HHHHHHHchhCCCCcchHHHHHHHHHhc-CChHHH-HHHHHHHHHcCCCCChHHHHHHH-HHhcccChHHHHHHHHHHhH
Q 043580 473 AFEVFYHIRDRTTSVSPWNAIICGLAMH-GDANLT-LKIYSDLEKRNIKLNSITFIGVL-STCCHAGLVDLGERYFKSMK 549 (665)
Q Consensus 473 A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~ 549 (665)
|..+...... .+...|..-+...... .|.+-. .+++......-..+....|+... .........+..+..+..+
T Consensus 378 a~~l~~e~f~--~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~- 454 (568)
T KOG2396|consen 378 AVKLTTELFR--DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV- 454 (568)
T ss_pred HHHhhHHHhc--chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh-
Confidence 3333323333 4444444444443321 122221 12222333221223333343333 0111111122222222222
Q ss_pred hhcCCCCChhH-HHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhccCCCCC
Q 043580 550 SVYNVEPDLKH-YGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS--RIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 550 ~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
..|+..+ -+.+++.+.+.|-..+|...+..+. .+|+...+..++..- ..+-+...+..+|+.+..-...++
T Consensus 455 ----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 455 ----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred ----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 3454333 3457778888899999999998886 335677777776543 223347888888988876555677
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..|...-..-...|..+.+-.++.+++.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 7766665556688888888888877765
No 445
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.55 E-value=2.2e+02 Score=27.29 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=60.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CC--ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNI-KL--NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..-|.+.+++..|...|.+-++... .| +.+.|+.-..+-...|++..++.-..... .+.| ....|-.=+.++.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al---~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL---KLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhhhhhhHHHH
Confidence 3446666677777777776665432 22 34556666656666788888888777766 5678 5666666677777
Q ss_pred hcCChHHHHHHHHhCC
Q 043580 570 RAGQLEDAEEVIRSMP 585 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~ 585 (665)
...++++|....++..
T Consensus 165 eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 8888888888887764
No 446
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=51.77 E-value=2e+02 Score=28.43 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=14.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
.+...+++..|.++|+++......|
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~ 163 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSA 163 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccCh
Confidence 3445566666666666666554333
No 447
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.66 E-value=60 Score=26.64 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 043580 575 EDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 640 (665)
+.|.++.+-|. ...............|++.-|..+...++..+|++.......+.+|.+.|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 44555555552 2333444455667899999999999999999999999999999888777643
No 448
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.85 E-value=60 Score=20.62 Aligned_cols=33 Identities=6% Similarity=0.116 Sum_probs=19.5
Q ss_pred hhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHH
Q 043580 131 AQNDCWREALEVFRDMRILGVIPNEVTLASVIS 163 (665)
Q Consensus 131 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 163 (665)
.+.|-..++..+++.|.+.|...+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666655555443
No 449
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.29 E-value=70 Score=25.39 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 043580 438 GRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR 483 (665)
Q Consensus 438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 483 (665)
..+-+..+....+.|++.+...-++++.+.+++..|.++|+-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455555666677777777777777777777777777666654
No 450
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=49.86 E-value=1.8e+02 Score=27.86 Aligned_cols=119 Identities=7% Similarity=0.015 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc------cChHHHHHHHHHHhHhhcCCCCChh-HHHHHhhHhhhcCChH
Q 043580 503 ANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH------AGLVDLGERYFKSMKSVYNVEPDLK-HYGCMVDLLGRAGQLE 575 (665)
Q Consensus 503 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 575 (665)
++++..++++....+ .|-+......|.++-. .-+|.....+|+.+.. +.|++. +.|. ..+..+..-.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehH-HHHHHHhhhHH
Confidence 566777777777777 4777777766665532 2367777777777774 466433 3433 33444555567
Q ss_pred HHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 576 DAEEVIRSMPMKADVVIW----GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.++.+.+.+...|...-| ..-...+.+.|..++|...|++++.+.++...-
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 777777777644322222 222344678888999999999988888776653
No 451
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.25 E-value=48 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
.+.......|+.++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34445667788888888888776543
No 452
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.09 E-value=2.1e+02 Score=25.98 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=64.3
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 489 PWNAIICGLA--MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 489 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
.|...+.++. .+++++.|++.+-.- .+.|+. -.-++.++...|+.+.|..+++.+.- .-.+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 4666677764 456777777766221 122222 22466667767888888888887641 1113333444444
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043580 567 LLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHG 604 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 604 (665)
. ...+...||..+.+....+-....+..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 566888888888888765433556777777666444
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.52 E-value=78 Score=24.91 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=41.2
Q ss_pred HhcCCHHHHHHHHHHHhccC---CCCC---------chHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCCccc
Q 043580 601 RIHGNVEVGERAAKSLAGLQ---PSHG---------PSRVLLSNIYADAGRWEDAFSIRKEMRD-----CGMKRLPGFSG 663 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~---p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 663 (665)
...|.+++|..-++++.+.. |... ..+..|+.++...|++++++.--++.+. -.+..+.|..|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 35677888888888876543 3222 2366788999999999999887776643 33556666666
Q ss_pred c
Q 043580 664 V 664 (665)
Q Consensus 664 ~ 664 (665)
|
T Consensus 100 I 100 (144)
T PF12968_consen 100 I 100 (144)
T ss_dssp H
T ss_pred H
Confidence 5
No 454
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=48.28 E-value=71 Score=29.45 Aligned_cols=55 Identities=24% Similarity=0.122 Sum_probs=36.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.++...++.+.|....++.+.++|+++.-..--|-+|.+.|-+.-|++-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 4456666777777777777777777766555666667777777777666665443
No 455
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=47.74 E-value=61 Score=25.84 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=29.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
-.+...-+.+.|..+|+++++..|++...+..++..+-..
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 3344556779999999999999999999888887765543
No 456
>PF15469 Sec5: Exocyst complex component Sec5
Probab=47.62 E-value=1e+02 Score=26.72 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHhCCCccCCCcccc
Q 043580 639 RWEDAFSIRKEMRDCGMKRLPGFSGV 664 (665)
Q Consensus 639 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 664 (665)
..++..++...+++.+...+|.+-|+
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34445555555555555555555444
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.95 E-value=56 Score=30.10 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=31.5
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP--------MKADVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
..-.++.-|.+.|++++|.++++.+. ..+...+...+..++.+.|+.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33456666777777777777777763 012233444455555566666555554433
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.90 E-value=7 Score=36.76 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=77.6
Q ss_pred hhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
...|.++.|++.+-..+ .. +....|..-..++.+.+....|++=+..+++++|+...-|-.-+.+....|+|++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 36789999999998886 33 45666667777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcc
Q 043580 647 RKEMRDCGMKR 657 (665)
Q Consensus 647 ~~~~~~~~~~~ 657 (665)
+..+.+.+...
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 99999887743
No 459
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.85 E-value=2e+02 Score=27.36 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=23.0
Q ss_pred HhhHhhhcCChHHHHHHHHhCCCC-CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMPMK-ADV---VIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
|.-+-.+.|+..+|.+.++.+... |-. .+-..|+.++....-+.....++-+.-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444455555555555554321 211 112344444444444444444444443
No 460
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.56 E-value=4.1e+02 Score=28.72 Aligned_cols=179 Identities=8% Similarity=0.022 Sum_probs=95.5
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVS---PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 539 (665)
++..-|+.++|..+.+++........ -...+..+|+-.|+.....+++.-.... ...|..-...+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 34445666677777777776532111 1334556677777766666666554443 2445555556666667777777
Q ss_pred HHHHHHHHhHhhcCCCCChh--HHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 043580 540 LGERYFKSMKSVYNVEPDLK--HYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGN-VEVGERAAKSL 616 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 616 (665)
....+.+-+.+. .+|-+. +-.+|.-+|+-.|. .+|+.+++.|...|... .++|- ...|.-+.++-
T Consensus 589 ~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~~~f---------VRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 589 QLPSTVSLLSES--YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDPVDF---------VRQGALIALAMIMIQQT 656 (929)
T ss_pred hchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcChHHH---------HHHHHHHHHHHHHHhcc
Confidence 777777776653 444333 33334444444444 77888888887544222 22221 23334444444
Q ss_pred hccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 617 AGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 617 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
-++.|+...+...+.++- ..+.++...-|--.+.+|+-
T Consensus 657 ~~~~pkv~~frk~l~kvI--~dKhEd~~aK~GAilAqGil 694 (929)
T KOG2062|consen 657 EQLCPKVNGFRKQLEKVI--NDKHEDGMAKFGAILAQGIL 694 (929)
T ss_pred cccCchHHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhh
Confidence 455565555444443322 23445555555555555553
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.47 E-value=1.5e+02 Score=24.60 Aligned_cols=65 Identities=6% Similarity=-0.020 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 043580 273 TMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI 338 (665)
Q Consensus 273 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (665)
++.+.+++.|++++..- ..++..+...++.-.|.++++.+.+.+...+..+.-..+..+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 34556667777766543 356666666667788888999998888777777766666666666543
No 462
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.27 E-value=1.1e+02 Score=27.75 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=49.8
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.+-.+..++...|++-++++...+.. ..| +...|-.-..+....-+..+|..-+.++++++|.-....
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 34445667777888888888887776 234 556666666667777788999999999999999766543
No 463
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.67 E-value=40 Score=31.51 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=31.2
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLI 294 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 294 (665)
.-|+..|....+.||+++|+.++++.++.|+.--..+|...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788888888888888888888888888766656554443
No 464
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=45.55 E-value=3.3e+02 Score=27.41 Aligned_cols=98 Identities=2% Similarity=-0.212 Sum_probs=42.0
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhHH
Q 043580 30 LRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAR 109 (665)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 109 (665)
|.+....| ..+...+-..+... ++...+.....++....+...+..+.+-+..++...-....+++...+......
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 55555555 34444444444332 222233333333332222222444555555555555555566665555544444
Q ss_pred HhhhcCCCCCcccHHHHHHHHh
Q 043580 110 EVFDKTPIKCCVSYTSMIMGFA 131 (665)
Q Consensus 110 ~~~~~~~~~~~~~~~~ll~~~~ 131 (665)
.+..-...++.......+.++.
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHH
Confidence 4333333333333333334443
No 465
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.93 E-value=4.9e+02 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.1
Q ss_pred eeeHHHHHHHHhhcCChhHHHHHHHHHHH
Q 043580 252 VVSWGTMIDGYLQVERLSEALTMYRAMLC 280 (665)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 280 (665)
..-|..|+..|...|+.++|++++.+...
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45688888888889999999999888865
No 466
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.35 E-value=5.5e+02 Score=29.56 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=58.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhC-----------------CCC------c-------chHHHHHHHHHhcCChHHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDR-----------------TTS------V-------SPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~-----------------~~~------~-------~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
+..+|..+|+.-+|...|.+.... +++ + .-|...++.+-..+..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 444577788888888877665432 000 0 1144455666666666666666
Q ss_pred HHHHHHcCCCCCh----HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChH
Q 043580 510 YSDLEKRNIKLNS----ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 510 ~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (665)
-...++. ++++. .+++++.+-....|.+-+|.+.+-.-- .......+...++-.+..+|+++
T Consensus 1006 A~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccchH
Confidence 6665553 22222 245556666666666666655443321 10112234445555555555543
No 467
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.30 E-value=3.5e+02 Score=27.25 Aligned_cols=210 Identities=11% Similarity=0.039 Sum_probs=107.8
Q ss_pred HHHHHhcCCchHHHHHHhhcCCCCcch--hhHHHHHHHhcCChhhHHHhhhcCCCCCcc--cHHHHHHHHhhcCChHHHH
Q 043580 65 INLYAKCGLISQAKSMFDSCSTLDPVA--CNIMISGYIRNDRLNDAREVFDKTPIKCCV--SYTSMIMGFAQNDCWREAL 140 (665)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~ 140 (665)
+..-+..|+.+.+..+++....++... ..+.+...++.|+.+-+.-+++.-..++.. ....-+...+..|+.+.+.
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 334456788888888888766554321 223344445678887666666654333321 1233455666778877655
Q ss_pred HHHHHhHHcCCCCCHh---hHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhH--HHHHHHHHhccCCHHHHHHHHhh
Q 043580 141 EVFRDMRILGVIPNEV---TLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVII--STNLLNMYCVCSSLVEARSLFDE 215 (665)
Q Consensus 141 ~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 215 (665)
.+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... -...+...+..|+.+-+.-+++.
T Consensus 86 ~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 86 ELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 5554 33211110 0112233344556554 4455556665554321 12345555667777766666655
Q ss_pred ccCCC---cccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee---HHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCH
Q 043580 216 MKERN---IVSWNVMLNGFAKAGLVELARELFERIPSKDVVS---WGTMIDGYLQVERLSEALTMYRAMLCDGIAPND 287 (665)
Q Consensus 216 ~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 287 (665)
-...+ ..-+ +.+...+..|+.+-+.-+++.-..++... ..+++...+..|+.+ +.+-+.+.|..++.
T Consensus 158 g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 158 KACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 44322 2222 23334455677777766666655543321 224444444555543 44455566666653
No 468
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.86 E-value=4.3e+02 Score=28.17 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=14.9
Q ss_pred cchhhHHHHHHHhcCChhhHHHhhhcC
Q 043580 89 PVACNIMISGYIRNDRLNDAREVFDKT 115 (665)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~A~~~~~~~ 115 (665)
+.-|+ .+..+.-+|+++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45555 455666667777777776443
No 469
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.27 E-value=46 Score=22.60 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 471 NTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 471 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
+...++++.+.....|..-.-.++.++...|++++|.++++++..
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444443333333444556666666666666666665543
No 470
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.19 E-value=4.1e+02 Score=27.75 Aligned_cols=117 Identities=10% Similarity=0.030 Sum_probs=62.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC------------hHHHHHHHHHhcccChHHHHHHHHHHhHhhc--C-----------
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLN------------SITFIGVLSTCCHAGLVDLGERYFKSMKSVY--N----------- 553 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----------- 553 (665)
....+++|...|.-....- .|+ ..+...+...+...|+.+-|..+.++..-.+ -
T Consensus 250 hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred cchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 3445666666666555432 222 2244555566667777777777776654210 0
Q ss_pred -----CCC-ChhHHHHH---hhHhhhcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 043580 554 -----VEP-DLKHYGCM---VDLLGRAGQLEDAEEVIRSMP-MKA--DVVIWGTLLAASR-IHGNVEVGERAAKSL 616 (665)
Q Consensus 554 -----~~p-~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 616 (665)
..| |...|-+| +..+.+.|-+.-|.++.+-+. ..| |+.....++..|+ +..+|+--+++++..
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 112 33333332 233445677777777766654 223 4555556666653 556666666666665
No 471
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.87 E-value=32 Score=27.60 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=23.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043580 264 QVERLSEALTMYRAMLCDGIAPNDVMIVDLISA 296 (665)
Q Consensus 264 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (665)
..|.-..|..+|+.|++.|-+||. ++.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 346667899999999999999984 4455543
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.69 E-value=3.2e+02 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhC
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDR 483 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~ 483 (665)
.++.-|.+.+++++|..++..|.=.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~ 437 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWN 437 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCcc
Confidence 4667788888888888888877654
No 473
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.46 E-value=1.9e+02 Score=27.30 Aligned_cols=76 Identities=8% Similarity=0.129 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHh----------cCChhhHHHhh
Q 043580 43 QQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIR----------NDRLNDAREVF 112 (665)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~----------~~~~~~A~~~~ 112 (665)
.++|+.|.+.++.|.-+.+.=+.-.+++.=.+.+...+|+.+.. |+.-|..|+..||. .|++..-.+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 56888999999999999888888888898999999999999876 33335555555543 36666666666
Q ss_pred hcCCCCC
Q 043580 113 DKTPIKC 119 (665)
Q Consensus 113 ~~~~~~~ 119 (665)
+.-+..|
T Consensus 342 Q~yp~td 348 (370)
T KOG4567|consen 342 QNYPTTD 348 (370)
T ss_pred hcCCCCC
Confidence 6554443
No 474
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.44 E-value=29 Score=27.81 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHH
Q 043580 132 QNDCWREALEVFRDMRILGVIPNEVTLASVISSS 165 (665)
Q Consensus 132 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 165 (665)
..|.-..|..+|..|.++|-.||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446667799999999999999985 56666543
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.41 E-value=3.8e+02 Score=27.12 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=31.6
Q ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccC
Q 043580 387 WSAMISGYAQ---NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSG 433 (665)
Q Consensus 387 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 433 (665)
...++.++.+ .++++.|+.++..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344444444 5789999999999999998887665555555544443
No 476
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.13 E-value=6e+02 Score=29.07 Aligned_cols=184 Identities=9% Similarity=-0.051 Sum_probs=99.1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 043580 351 DHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA 430 (665)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 430 (665)
+|...-...+..+...+.. ....+...+..+|...-...+.++.+.+..+. +..+. -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 4444444445555443321 12234455566676666666666666554332 11222 2345555555556665
Q ss_pred ccCcHHH-HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHH
Q 043580 431 SSGTLKE-GRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 431 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
..+..+. +...+..+.. .++..+-...+.++...|..+.+...+...... ++...-...+.++...+. .++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA-SAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC-CChHHHHHHHHHHHhccc-cchHHH
Confidence 5554332 2233333332 345667777788888887765553333333332 555555556666666665 345566
Q ss_pred HHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh
Q 043580 510 YSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS 550 (665)
Q Consensus 510 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 550 (665)
+-.+.+ .|+...-...+.++.+.+....+...+....+
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666654 66777777777777765434456666666654
No 477
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.91 E-value=62 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=13.7
Q ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHhhcC
Q 043580 236 LVELARELFERIPSKDVVSWGTMIDGYLQVE 266 (665)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (665)
+.+++..+++.++.....+|..+..++-..|
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444444444444444444444444444443
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.68 E-value=50 Score=24.15 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=18.5
Q ss_pred hcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCC
Q 043580 70 KCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDR 104 (665)
Q Consensus 70 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 104 (665)
...+.+.+.++++.++...+..|..+..++-..|.
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 34445555555555555555555555555544443
No 479
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.01 E-value=2.8e+02 Score=24.95 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC---ChhHHH--HHhhHhhhcCChHHHHHHHHhCC
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP---DLKHYG--CMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
.+...-++.|+--|.-...+.+|-+.|..-. ++.| +..++. .-|......|+.++|++.+....
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 4444455555554444444444444333322 4444 222222 23444556666666666666553
No 480
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.90 E-value=49 Score=30.79 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=21.0
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHh
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRS 583 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (665)
+.|+.++|..+|+... .+.| ++.....+.......+++-+|-+++-+
T Consensus 128 ~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred hccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 3455555555555554 3344 344444333333333444444444433
No 481
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.83 E-value=3.5e+02 Score=25.76 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 043580 595 TLLAASRIHGNVEVGERAAKSL 616 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~ 616 (665)
.+...|...++..+|..+..++
T Consensus 149 riarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 149 RIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHhcCcHHHHHHHHHHH
Confidence 3344444455555555554444
No 482
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.50 E-value=2.7e+02 Score=24.29 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-
Q 043580 373 RQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT- 451 (665)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 451 (665)
+.+.++.+++..+.|..+..+-++.-+.+++.+.+- ...=.+++..|.+..++.++.++++.+.+..+.
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444455667776666666655555443321 112234566677777888888888887654322
Q ss_pred -------------CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 043580 452 -------------LNDNLSAAIIDMYAKCGSINTAFEVFY 478 (665)
Q Consensus 452 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 478 (665)
+.-.+.+.....+.+.|.++.|..+++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 222334444445555555555555544
No 483
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.39 E-value=4.6e+02 Score=26.91 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-CCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCC
Q 043580 19 NSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSG-LESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL 87 (665)
Q Consensus 19 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (665)
-.-|...+...+..|.+.+.+.+...++.+|+..+ -.|+.+++-+ ..-|-..-+++.|..+|....+.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHHhhc
Confidence 33477778888888888887888888888888654 4555554432 23444445578888888777653
No 484
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.35 E-value=6.6e+02 Score=28.78 Aligned_cols=199 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC-------CCCcchHHHHHHHHHhC-CCchHHHHHHHHHHHCCCCCChhHHHH-----
Q 043580 358 ALIAGFIRNGMIEDARQLFNNMQ-------KRDVYSWSAMISGYAQN-EQPNMALELFHGMVDAGVKPNEITMVS----- 424 (665)
Q Consensus 358 ~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~----- 424 (665)
..++.+...+++.+|..+.++-+ +.++..|-.=+..+.+. ++.+---.++..+.+..+.-+...-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHHchhCCCCcchHHHHHHHH
Q 043580 425 -----VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG--SINTAFEVFYHIRDRTTSVSPWNAIICGL 497 (665)
Q Consensus 425 -----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 497 (665)
-.......++.....+.+....+. ..-.......++.+|.+.+ ++++|+..+..+.+.
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-------------- 843 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE-------------- 843 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc--------------
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc----------cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH----------AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL 567 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (665)
+...|.+.++.+.= +.+-...|+..+..|.- ..|+.+=+-+++++. .++|+..-| ..
T Consensus 844 ----~~~~ae~alkyl~f--LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~---~l~~~~rry----~I 910 (928)
T PF04762_consen 844 ----DPESAEEALKYLCF--LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQ---KLPPLYRRY----KI 910 (928)
T ss_pred ----ChHHHHHHHhHhee--eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHH---hCChhheee----eH
Q ss_pred hhhcCChHHHHHHHHhC
Q 043580 568 LGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~ 584 (665)
=...+++++|++.+.++
T Consensus 911 D~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 911 DDHLKRYEKALRHLSAC 927 (928)
T ss_pred hhhhCCHHHHHHHHHhh
No 485
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.07 E-value=3.1e+02 Score=24.86 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=46.4
Q ss_pred hcCCHHHHHHHHHHchhCCCCc-ch-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHH
Q 043580 466 KCGSINTAFEVFYHIRDRTTSV-SP-WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
..++++.|.+.+-.- +. .. -..++.++...|+.+.|+.+++...-.. .+......++.. ...+.+.+|..
T Consensus 90 D~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 90 DHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred ChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHH
Confidence 445666666665222 11 12 2246666666777777777776643211 122222223333 34466777776
Q ss_pred HHHHhHhhcCCCCChhHHHHHhhHhhhcC
Q 043580 544 YFKSMKSVYNVEPDLKHYGCMVDLLGRAG 572 (665)
Q Consensus 544 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (665)
+-+...+. -....+..++..+....
T Consensus 162 ~~R~~~~~----~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 162 FQRSYPDE----LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHhCchh----hhHHHHHHHHHHHHHHh
Confidence 65554421 01335555555555433
No 486
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=4.6e+02 Score=26.77 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=98.5
Q ss_pred HhcCChHHHHHHHHHHHHcC-CCCCh-------HHHHHHHHH-hcccChHHHHHHHHHHhHhhcCCCCChhH--HHHHhh
Q 043580 498 AMHGDANLTLKIYSDLEKRN-IKLNS-------ITFIGVLST-CCHAGLVDLGERYFKSMKSVYNVEPDLKH--YGCMVD 566 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~-~~p~~-------~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~ 566 (665)
.-.|++.+|++-..+|.+-- -.|.. .....++.. |+..+-++.|...|....+. --.-|... -..++-
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAI 412 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHH
Confidence 45789999998888887532 12331 122333333 34578889999888887764 22223322 234667
Q ss_pred HhhhcCChHHHHHHHHhCCCC-CCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------CchHHHHH
Q 043580 567 LLGRAGQLEDAEEVIRSMPMK-ADV--------VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------GPSRVLLS 631 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~ 631 (665)
.|.+.|+-+.--++++.+.-. ... ..+..-+--..+.+++.+|...+.+.++..-.. .-....|+
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 788888877777777776511 111 111111112347889999999999887655111 12256778
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCCC
Q 043580 632 NIYADAGRWEDAFSIRKEMRDCGMKRLPG 660 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 660 (665)
.+....|+..++.+..+-.++.. +|.|+
T Consensus 493 ~v~lslgn~~es~nmvrpamqlA-kKi~D 520 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVRPAMQLA-KKIPD 520 (629)
T ss_pred HHHHHhcchHHHHhccchHHHHH-hcCCC
Confidence 88888999999988877776642 24444
No 487
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.07 E-value=56 Score=30.56 Aligned_cols=72 Identities=8% Similarity=0.018 Sum_probs=40.3
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGT-LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
|+..|...+.--.+.|.+.+.-.++.++. ..| +.+.|-. ...-+...++++.+..++.+.+.++|++|..|.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 45555444444444455555555555543 223 4444432 112245667777778888888888888777654
No 488
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.18 E-value=6e+02 Score=28.25 Aligned_cols=131 Identities=12% Similarity=0.171 Sum_probs=82.8
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
.....+|+++.|.+.-.++ .+..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++-
T Consensus 651 ~LaLe~gnle~ale~akkl----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKL----DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeehhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 3445677787777766554 4567888888888888888888888877654 33333356667887777
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
.++.+.+..+ -|..... .. -.-.|+.++=.++++.....|- .| .....+|.-++|.++.++.-.
T Consensus 718 ~Km~~iae~r----~D~~~~~--qn-alYl~dv~ervkIl~n~g~~~l--ay----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEIR----NDATGQF--QN-ALYLGDVKERVKILENGGQLPL--AY----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHhh----hhhHHHH--HH-HHHhccHHHHHHHHHhcCcccH--HH----HHHhhcCcHHHHHHHHHhhcc
Confidence 7666655432 2322211 11 1134778888888887764431 11 113457888888888888855
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.13 E-value=1.1e+02 Score=26.18 Aligned_cols=61 Identities=11% Similarity=-0.095 Sum_probs=33.9
Q ss_pred hHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHH
Q 043580 146 MRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLV 207 (665)
Q Consensus 146 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 207 (665)
+++.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4455655544433 344444444455566666666666666656555555566666666543
No 490
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.85 E-value=1.8e+02 Score=21.41 Aligned_cols=42 Identities=12% Similarity=-0.073 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhcc
Q 043580 176 MLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMK 217 (665)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 217 (665)
++|+.....|+..|..+|..+++.+.-+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666777777777766666665556666666666665
No 491
>PRK09857 putative transposase; Provisional
Probab=35.75 E-value=2.1e+02 Score=27.16 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 043580 594 GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKR 657 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 657 (665)
..++......|+.++-..+++...+..|.......+++.-+.+.|.-+++++..++|+..|+..
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444556777667777777766667777777788888888888888999999998888753
No 492
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.11 E-value=4.1e+02 Score=25.08 Aligned_cols=130 Identities=9% Similarity=-0.046 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHchhCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc-------Ch
Q 043580 469 SINTAFEVFYHIRDRTTSVSPWNAIICGLAM----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA-------GL 537 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------~~ 537 (665)
+...|.+.|...... ..+.....|...|.. ..+..+|..++++..+.|..+-..+...+...|..- -+
T Consensus 92 ~~~~A~~~~~~~a~~-g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 92 DKTKAADWYRCAAAD-GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred cHHHHHHHHHHHhhc-ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 345555555533332 222233334444433 336777777777777777444322223333333221 13
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043580 538 VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHG 604 (665)
Q Consensus 538 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 604 (665)
...|...+.++... + +......+..+|.. ..+.++|...|++....-+......+. .+...|
T Consensus 171 ~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcC
Confidence 34677777777764 3 34444445555533 347788888888876443333333333 444444
No 493
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.84 E-value=4.9e+02 Score=25.89 Aligned_cols=169 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh---------CCCCchh
Q 043580 255 WGTMIDGYLQVERLSEALTMYRAMLCD--GIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA---------GFDCYDF 323 (665)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~ 323 (665)
+.-+...|...|+++.|++.|.+.+.- ..+-....+..+|....-.|+|........+..+. .+++-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Q ss_pred HHHHHHHHHHhcCChHHHHHHH----------HhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCcchHH
Q 043580 324 IQATIIHFYAACGRINLARLQF----------ELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQ-----KRDVYSWS 388 (665)
Q Consensus 324 ~~~~l~~~~~~~g~~~~a~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~ 388 (665)
.+..+.....+ ++..|.+.| ...+.|...+.-..+.+++--++-+--..+..... +-.+..+.
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCC-----CCCChhHHHHHHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAG-----VKPNEITMVSVFC 427 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~ 427 (665)
.+..-|. +++...+++++++...= +.|...++-.+|+
T Consensus 311 il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 311 ILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.81 E-value=2e+02 Score=23.81 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=38.1
Q ss_pred HHhHHcCCCCCHhhHHHHHHHHhcc-CChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 144 RDMRILGVIPNEVTLASVISSSVHL-GGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 144 ~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
+.+++.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566776555433 444555543 45667788888888777666666655566666666643
No 495
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.72 E-value=73 Score=18.22 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHH
Q 043580 538 VDLGERYFKSMKSVYNVEPDLKHYGC 563 (665)
Q Consensus 538 ~~~a~~~~~~~~~~~~~~p~~~~~~~ 563 (665)
++.|..+|++... +.|++.+|..
T Consensus 3 ~dRAR~IyeR~v~---~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL---VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH---hCCCchHHHH
Confidence 4556666666552 3455555543
No 496
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.34 E-value=1e+02 Score=29.01 Aligned_cols=69 Identities=9% Similarity=-0.059 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH-HHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL-LSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
.|+..|...+.--.+.|.+.+...++.++....|.+...|.. -..-|...++.+.++.++.+.+..+.+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 578888888877778889999999999999999999988765 444578889999999999887776553
No 497
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.02 E-value=6.5e+02 Score=27.37 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=53.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh----------HHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCC
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI----------TMVSVFCAIASSGTLKEGRWAHEYVLNNS--ITL 452 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~ 452 (665)
.+...++..|....+++..+++.+.+.. .||.. .|.-.++-=.+.|+.+.|..+.-.+.+.. +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455566666666677777777776665 22211 12222333344566666766666665432 334
Q ss_pred ChhH-----HHH--HHHHHHhcCCHHHHHHHHHHchhCCCCcc
Q 043580 453 NDNL-----SAA--IIDMYAKCGSINTAFEVFYHIRDRTTSVS 488 (665)
Q Consensus 453 ~~~~-----~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 488 (665)
|... |.- +-..|...+..+.|.+.|++.-+..|...
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 4321 111 11223445567778888888777655543
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.69 E-value=95 Score=24.30 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=26.5
Q ss_pred HHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccC
Q 043580 126 MIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLG 169 (665)
Q Consensus 126 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 169 (665)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 44445555555667777777777666666666555555555544
No 499
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.60 E-value=1.5e+02 Score=20.17 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=17.1
Q ss_pred hhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHH
Q 043580 131 AQNDCWREALEVFRDMRILGVIPNEVTLASVISS 164 (665)
Q Consensus 131 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 164 (665)
...|++-+|-++++.+-.....|....+..+|+.
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 3456666777777766543223333344444443
No 500
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.12 E-value=2.1e+02 Score=26.64 Aligned_cols=96 Identities=9% Similarity=0.057 Sum_probs=56.5
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCCc---
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM-----KADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHGP--- 625 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~--- 625 (665)
-...+..+++.|+..++.+.+.+.+++... ....+.+-..+..-.--|| +++.++..+-+++...+-..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 466777889999999999999998877531 1222333333333222333 45555555556665544321
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.-..-|..+....++.+|..++-..+.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 122334445566788888888866654
Done!