Query 043580
Match_columns 665
No_of_seqs 620 out of 3687
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 10:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.7E-39 1.6E-43 342.2 41.4 501 99-654 63-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.6E-39 3.3E-43 339.8 35.9 466 131-655 64-547 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-26 9.2E-31 229.6 42.0 372 259-639 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-26 2.2E-30 226.8 39.7 353 294-654 6-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 8.5E-27 2.9E-31 236.0 22.2 185 385-570 27-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 9.9E-27 3.4E-31 235.5 20.6 188 121-335 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.4E-23 4.6E-28 218.7 34.2 424 224-655 9-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 8.1E-23 2.8E-27 212.8 35.3 446 122-631 8-490 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.4E-22 8.3E-27 210.5 34.5 420 222-655 26-493 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 8.3E-22 2.8E-26 201.4 34.1 335 286-659 25-416 (450)
11 3fp2_A TPR repeat-containing p 99.9 1E-20 3.6E-25 198.0 34.5 440 121-628 26-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 3.7E-21 1.2E-25 196.6 29.9 298 352-655 25-360 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 2.2E-17 7.5E-22 176.7 56.4 540 27-638 843-1415(1630)
14 1xi4_A Clathrin heavy chain; a 99.9 3.5E-16 1.2E-20 167.6 59.0 536 60-645 987-1584(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 3.9E-19 1.3E-23 175.4 31.8 303 323-654 4-336 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.8E-18 6.1E-23 170.7 32.9 324 286-638 2-354 (359)
17 3hym_B Cell division cycle pro 99.8 1.2E-18 4E-23 169.9 28.8 288 350-640 19-321 (330)
18 3hym_B Cell division cycle pro 99.8 1.8E-18 6.3E-23 168.5 27.8 267 382-654 20-300 (330)
19 1fch_A Peroxisomal targeting s 99.8 1.2E-18 4E-23 172.8 25.0 283 365-652 37-358 (368)
20 1b89_A Protein (clathrin heavy 99.8 8.9E-17 3E-21 154.5 31.2 398 101-543 15-425 (449)
21 2xm6_A Protein corresponding t 99.8 4.2E-16 1.5E-20 160.3 38.5 352 265-636 56-452 (490)
22 2xm6_A Protein corresponding t 99.8 8.2E-16 2.8E-20 158.2 40.1 363 271-655 26-434 (490)
23 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4E-22 162.5 22.3 263 384-652 21-314 (327)
24 4eqf_A PEX5-related protein; a 99.8 8.5E-18 2.9E-22 166.2 21.5 261 383-649 64-352 (365)
25 2ooe_A Cleavage stimulation fa 99.8 1.3E-15 4.3E-20 158.4 37.5 408 220-654 12-493 (530)
26 4g1t_A Interferon-induced prot 99.8 1.5E-16 5.3E-21 163.3 30.0 370 251-664 50-470 (472)
27 3mkr_A Coatomer subunit epsilo 99.8 2.4E-16 8.2E-21 149.0 27.4 266 365-647 11-288 (291)
28 1fch_A Peroxisomal targeting s 99.8 3.3E-17 1.1E-21 162.3 21.8 275 368-654 16-315 (368)
29 4eqf_A PEX5-related protein; a 99.8 6.1E-17 2.1E-21 160.1 21.9 234 418-654 64-311 (365)
30 2ooe_A Cleavage stimulation fa 99.8 6.3E-15 2.1E-19 153.2 38.1 412 187-622 10-495 (530)
31 1b89_A Protein (clathrin heavy 99.7 4.6E-16 1.6E-20 149.6 25.8 376 202-613 15-411 (449)
32 3mkr_A Coatomer subunit epsilo 99.7 6.5E-17 2.2E-21 152.9 19.8 249 392-655 7-266 (291)
33 2pl2_A Hypothetical conserved 99.7 1.3E-16 4.6E-21 144.0 18.9 196 451-651 2-212 (217)
34 3uq3_A Heat shock protein STI1 99.7 8.3E-16 2.8E-20 143.6 20.2 219 422-654 8-237 (258)
35 4g1t_A Interferon-induced prot 99.7 8.6E-15 3E-19 150.2 27.8 380 221-631 51-471 (472)
36 3cv0_A Peroxisome targeting si 99.7 3.1E-15 1.1E-19 145.3 23.1 232 419-655 21-271 (327)
37 3uq3_A Heat shock protein STI1 99.7 2.5E-15 8.5E-20 140.4 19.7 235 385-632 6-255 (258)
38 3u4t_A TPR repeat-containing p 99.7 6.8E-15 2.3E-19 138.6 20.5 248 386-638 5-269 (272)
39 3e4b_A ALGK; tetratricopeptide 99.6 3.5E-14 1.2E-18 143.5 25.9 342 296-655 12-389 (452)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.1E-14 7.2E-19 135.5 21.3 243 396-647 17-269 (275)
41 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-14 6.6E-19 133.7 20.7 200 454-655 37-240 (252)
42 3u4t_A TPR repeat-containing p 99.6 3E-14 1E-18 134.2 21.9 231 421-656 5-253 (272)
43 1ouv_A Conserved hypothetical 99.6 1.2E-13 4.2E-18 130.0 25.9 219 424-655 11-253 (273)
44 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-16 5.4E-21 165.1 6.2 123 90-212 128-258 (1134)
45 2q7f_A YRRB protein; TPR, prot 99.6 9.9E-15 3.4E-19 134.9 16.6 198 454-655 23-224 (243)
46 2vq2_A PILW, putative fimbrial 99.6 2.6E-14 9E-19 130.2 18.2 199 454-654 8-212 (225)
47 3vtx_A MAMA; tetratricopeptide 99.6 5.4E-14 1.9E-18 123.5 18.7 167 485-655 3-172 (184)
48 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-15 5.4E-20 157.7 9.7 117 454-571 127-249 (1134)
49 3e4b_A ALGK; tetratricopeptide 99.6 7.8E-13 2.7E-17 133.6 29.0 377 198-652 11-420 (452)
50 2h6f_A Protein farnesyltransfe 99.6 2.7E-14 9.4E-19 139.4 17.7 212 385-637 98-322 (382)
51 2h6f_A Protein farnesyltransfe 99.6 1.2E-13 4.2E-18 134.8 22.3 244 353-637 97-366 (382)
52 2q7f_A YRRB protein; TPR, prot 99.6 3.4E-14 1.2E-18 131.2 15.9 180 454-637 57-240 (243)
53 1ouv_A Conserved hypothetical 99.5 1E-12 3.6E-17 123.5 23.9 229 383-625 5-257 (273)
54 2ho1_A Type 4 fimbrial biogene 99.5 5.3E-13 1.8E-17 123.9 21.5 207 384-629 37-248 (252)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.2E-13 7.6E-18 128.4 18.8 221 430-655 16-246 (275)
56 2pl2_A Hypothetical conserved 99.5 4.5E-13 1.6E-17 120.7 19.7 192 386-584 7-211 (217)
57 2vq2_A PILW, putative fimbrial 99.5 1.4E-12 4.9E-17 118.5 22.4 205 422-630 11-222 (225)
58 4a1s_A PINS, partner of inscut 99.5 5.3E-14 1.8E-18 141.4 13.9 263 389-653 53-372 (411)
59 4abn_A Tetratricopeptide repea 99.5 1.1E-13 3.8E-18 140.7 16.1 209 436-650 85-318 (474)
60 3sf4_A G-protein-signaling mod 99.5 1.3E-13 4.4E-18 138.3 16.0 295 353-647 9-370 (406)
61 3ro2_A PINS homolog, G-protein 99.5 2E-13 7E-18 132.9 16.4 263 390-654 11-333 (338)
62 3vtx_A MAMA; tetratricopeptide 99.5 5.6E-13 1.9E-17 116.9 16.5 169 453-625 4-176 (184)
63 3sf4_A G-protein-signaling mod 99.5 1.6E-13 5.5E-18 137.6 11.9 265 321-585 8-334 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.5 7.8E-13 2.7E-17 139.6 17.1 163 487-653 9-174 (723)
65 2ond_A Cleavage stimulation fa 99.4 2.7E-11 9.3E-16 115.8 24.1 221 401-626 33-277 (308)
66 3as5_A MAMA; tetratricopeptide 99.4 2.1E-12 7.3E-17 113.3 14.9 161 490-654 11-174 (186)
67 3ulq_A Response regulator aspa 99.4 9.7E-13 3.3E-17 130.6 13.9 227 425-652 109-367 (383)
68 4i17_A Hypothetical protein; T 99.4 2.9E-12 9.8E-17 116.8 15.1 191 454-655 7-211 (228)
69 4abn_A Tetratricopeptide repea 99.4 2.4E-12 8.2E-17 130.9 16.1 183 469-655 83-289 (474)
70 2ond_A Cleavage stimulation fa 99.4 2.3E-11 7.9E-16 116.3 21.8 215 436-656 33-273 (308)
71 3nf1_A KLC 1, kinesin light ch 99.4 2.3E-13 8E-18 130.9 7.1 237 384-653 27-307 (311)
72 4a1s_A PINS, partner of inscut 99.4 1.3E-12 4.4E-17 131.3 12.5 264 359-622 54-375 (411)
73 4e6h_A MRNA 3'-END-processing 99.4 2.2E-09 7.4E-14 112.0 36.3 219 402-626 327-577 (679)
74 4i17_A Hypothetical protein; T 99.4 1.5E-11 5E-16 112.1 18.0 208 417-635 5-225 (228)
75 1hz4_A MALT regulatory protein 99.4 4.2E-10 1.5E-14 111.1 28.0 161 492-652 140-321 (373)
76 3ulq_A Response regulator aspa 99.4 2.5E-11 8.6E-16 120.4 18.8 232 390-621 109-370 (383)
77 3ro2_A PINS homolog, G-protein 99.4 6.6E-12 2.3E-16 122.1 14.4 238 386-623 45-336 (338)
78 3as5_A MAMA; tetratricopeptide 99.3 2.8E-11 9.6E-16 106.1 16.7 169 455-627 9-181 (186)
79 3q15_A PSP28, response regulat 99.3 1.8E-11 6.3E-16 121.0 17.0 224 428-652 110-364 (378)
80 3nf1_A KLC 1, kinesin light ch 99.3 3.6E-12 1.2E-16 122.5 9.9 244 352-622 26-310 (311)
81 4e6h_A MRNA 3'-END-processing 99.3 5.3E-09 1.8E-13 109.1 33.0 418 219-656 64-573 (679)
82 3q15_A PSP28, response regulat 99.2 1.5E-09 5.3E-14 107.1 23.8 230 389-619 106-365 (378)
83 1qqe_A Vesicular transport pro 99.2 7.3E-11 2.5E-15 111.8 13.3 191 462-652 45-268 (292)
84 4gyw_A UDP-N-acetylglucosamine 99.2 8.4E-11 2.9E-15 124.2 14.2 165 454-622 9-177 (723)
85 3qky_A Outer membrane assembly 99.2 2.9E-10 9.9E-15 105.9 16.0 189 453-644 14-252 (261)
86 3edt_B KLC 2, kinesin light ch 99.2 2.6E-11 8.8E-16 114.6 8.8 164 490-653 88-281 (283)
87 4ga2_A E3 SUMO-protein ligase 99.2 1.6E-11 5.6E-16 102.9 6.0 137 498-639 8-149 (150)
88 2pzi_A Probable serine/threoni 99.2 1.5E-10 5.2E-15 123.1 14.7 170 465-639 402-583 (681)
89 3qky_A Outer membrane assembly 99.2 2.1E-10 7.2E-15 106.8 13.9 169 485-654 13-225 (261)
90 2yhc_A BAMD, UPF0169 lipoprote 99.2 2E-09 6.9E-14 97.4 19.7 108 533-658 107-218 (225)
91 3gyz_A Chaperone protein IPGC; 99.2 3.1E-11 1.1E-15 100.4 6.9 103 553-655 30-135 (151)
92 4ga2_A E3 SUMO-protein ligase 99.2 5.5E-11 1.9E-15 99.7 8.2 125 528-655 3-131 (150)
93 3mv2_B Coatomer subunit epsilo 99.2 2.3E-09 7.7E-14 98.9 19.2 245 360-626 20-289 (310)
94 1hz4_A MALT regulatory protein 99.2 3.6E-09 1.2E-13 104.4 22.2 235 387-622 56-325 (373)
95 2fo7_A Synthetic consensus TPR 99.2 5.4E-10 1.9E-14 91.8 13.8 128 524-654 3-133 (136)
96 2r5s_A Uncharacterized protein 99.2 3.2E-10 1.1E-14 98.1 12.9 160 489-652 8-172 (176)
97 3rjv_A Putative SEL1 repeat pr 99.1 4.3E-09 1.5E-13 94.0 19.3 173 473-655 5-199 (212)
98 3mv2_B Coatomer subunit epsilo 99.1 4.1E-09 1.4E-13 97.1 18.9 239 394-654 23-283 (310)
99 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.6E-14 102.5 15.9 164 485-652 115-283 (287)
100 2vsy_A XCC0866; transferase, g 99.1 5E-10 1.7E-14 117.3 13.9 161 467-631 2-169 (568)
101 3urz_A Uncharacterized protein 99.1 1.1E-09 3.8E-14 97.7 13.8 158 462-624 12-191 (208)
102 1qqe_A Vesicular transport pro 99.1 1.7E-09 5.8E-14 102.3 15.3 173 456-631 79-281 (292)
103 4gco_A Protein STI-1; structur 99.1 5.3E-10 1.8E-14 90.2 9.7 101 554-654 8-111 (126)
104 3edt_B KLC 2, kinesin light ch 99.1 2E-09 7E-14 101.4 14.9 201 420-620 44-282 (283)
105 2fo7_A Synthetic consensus TPR 99.1 4.3E-09 1.5E-13 86.3 14.9 131 489-623 3-136 (136)
106 2vgx_A Chaperone SYCD; alterna 99.0 5.1E-10 1.7E-14 93.4 8.5 102 553-654 15-119 (148)
107 3urz_A Uncharacterized protein 99.0 1.2E-09 4.1E-14 97.4 11.2 160 490-655 7-188 (208)
108 3dra_A Protein farnesyltransfe 99.0 4.5E-08 1.5E-12 91.4 21.7 180 469-652 84-286 (306)
109 4gco_A Protein STI-1; structur 99.0 3.8E-09 1.3E-13 85.1 11.2 109 523-634 14-125 (126)
110 2vsy_A XCC0866; transferase, g 99.0 1.1E-08 3.7E-13 107.1 17.8 153 500-656 2-160 (568)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.1E-08 3.8E-13 91.6 14.9 127 490-623 9-154 (213)
112 2pzi_A Probable serine/threoni 99.0 2.4E-08 8.2E-13 106.2 19.8 143 455-602 434-580 (681)
113 2xcb_A PCRH, regulatory protei 98.9 3.5E-09 1.2E-13 87.7 10.0 102 553-654 12-116 (142)
114 2c2l_A CHIP, carboxy terminus 98.9 4.6E-09 1.6E-13 98.4 10.1 193 454-653 4-199 (281)
115 1a17_A Serine/threonine protei 98.9 1.9E-08 6.4E-13 86.0 12.8 127 523-652 14-145 (166)
116 3qou_A Protein YBBN; thioredox 98.9 1.3E-08 4.5E-13 95.7 12.6 134 519-655 114-250 (287)
117 2qfc_A PLCR protein; TPR, HTH, 98.9 7.3E-08 2.5E-12 91.1 17.8 163 489-652 77-265 (293)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 6.5E-08 2.2E-12 92.1 17.5 220 397-645 4-253 (307)
119 2e2e_A Formate-dependent nitri 98.9 5.6E-09 1.9E-13 90.4 9.0 124 498-625 21-150 (177)
120 3u3w_A Transcriptional activat 98.9 9.5E-08 3.3E-12 90.3 18.1 160 493-652 81-265 (293)
121 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.8E-11 80.7 25.9 227 399-632 48-301 (306)
122 2kck_A TPR repeat; tetratricop 98.8 2E-08 6.8E-13 79.1 10.6 101 555-655 2-108 (112)
123 2lni_A Stress-induced-phosphop 98.8 2.3E-08 8E-13 81.6 11.2 116 521-639 15-133 (133)
124 3upv_A Heat shock protein STI1 98.8 1.7E-08 5.9E-13 81.6 10.0 97 558-654 4-102 (126)
125 4f3v_A ESX-1 secretion system 98.8 4.5E-08 1.6E-12 89.0 13.4 185 466-655 18-239 (282)
126 2r5s_A Uncharacterized protein 98.8 1.7E-08 5.9E-13 87.1 10.4 157 457-618 9-172 (176)
127 3gyz_A Chaperone protein IPGC; 98.8 2.7E-08 9.3E-13 82.5 11.1 101 521-624 35-138 (151)
128 2ifu_A Gamma-SNAP; membrane fu 98.8 1.5E-08 5.1E-13 96.6 10.7 197 431-651 3-222 (307)
129 2vyi_A SGTA protein; chaperone 98.8 3.9E-08 1.3E-12 79.9 11.5 118 521-641 11-131 (131)
130 1p5q_A FKBP52, FK506-binding p 98.8 2.5E-08 8.6E-13 96.1 11.9 127 523-652 148-293 (336)
131 2vgx_A Chaperone SYCD; alterna 98.8 7.2E-09 2.5E-13 86.3 6.9 106 521-629 20-128 (148)
132 1na0_A Designed protein CTPR3; 98.8 6.8E-08 2.3E-12 77.7 12.2 114 522-638 9-125 (125)
133 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.7E-07 5.7E-12 83.9 15.8 151 457-621 9-174 (213)
134 2uy1_A Cleavage stimulation fa 98.8 5.9E-06 2E-10 83.7 28.2 373 202-618 6-412 (493)
135 1hxi_A PEX5, peroxisome target 98.8 2.2E-08 7.4E-13 80.0 8.2 95 560-654 19-115 (121)
136 3rjv_A Putative SEL1 repeat pr 98.7 4.5E-07 1.5E-11 80.8 17.3 161 453-621 17-199 (212)
137 2yhc_A BAMD, UPF0169 lipoprote 98.7 9.7E-07 3.3E-11 79.6 19.6 204 386-625 6-219 (225)
138 2fbn_A 70 kDa peptidylprolyl i 98.7 3.6E-09 1.2E-13 93.6 3.2 127 525-654 41-187 (198)
139 4gcn_A Protein STI-1; structur 98.7 3E-08 1E-12 80.0 8.4 95 559-653 9-112 (127)
140 3sz7_A HSC70 cochaperone (SGT) 98.7 4.4E-08 1.5E-12 83.4 9.8 109 521-632 10-121 (164)
141 3q49_B STIP1 homology and U bo 98.7 8.5E-08 2.9E-12 78.7 10.8 97 557-653 8-106 (137)
142 3u3w_A Transcriptional activat 98.7 1.8E-06 6E-11 81.6 21.0 160 460-619 81-266 (293)
143 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.7E-12 82.2 11.4 122 532-656 20-147 (177)
144 2xcb_A PCRH, regulatory protei 98.7 2.7E-08 9.4E-13 82.3 6.9 107 522-631 18-127 (142)
145 3gw4_A Uncharacterized protein 98.7 1.9E-07 6.4E-12 82.8 12.6 131 522-652 26-175 (203)
146 3q7a_A Farnesyltransferase alp 98.7 3.4E-06 1.1E-10 79.5 20.8 180 469-652 104-330 (349)
147 1elw_A TPR1-domain of HOP; HOP 98.6 1.6E-07 5.3E-12 74.6 10.3 107 523-632 5-114 (118)
148 1elw_A TPR1-domain of HOP; HOP 98.6 3.4E-07 1.2E-11 72.6 12.1 98 558-655 4-103 (118)
149 3upv_A Heat shock protein STI1 98.6 1.4E-07 4.9E-12 76.0 9.8 110 523-635 5-123 (126)
150 3sz7_A HSC70 cochaperone (SGT) 98.6 2.5E-07 8.6E-12 78.7 11.4 98 557-654 10-109 (164)
151 1na0_A Designed protein CTPR3; 98.6 2.3E-07 7.9E-12 74.4 10.6 98 558-655 9-108 (125)
152 2uy1_A Cleavage stimulation fa 98.6 1.5E-05 5.2E-10 80.7 26.2 353 266-652 28-412 (493)
153 2qfc_A PLCR protein; TPR, HTH, 98.6 8.6E-07 2.9E-11 83.7 15.9 163 457-619 78-266 (293)
154 2lni_A Stress-induced-phosphop 98.6 1.5E-07 5E-12 76.7 9.2 99 557-655 15-115 (133)
155 2hr2_A Hypothetical protein; a 98.6 1.3E-07 4.4E-12 77.3 8.1 63 591-653 58-131 (159)
156 2dba_A Smooth muscle cell asso 98.6 3.6E-07 1.2E-11 76.1 10.9 106 523-631 29-140 (148)
157 2dba_A Smooth muscle cell asso 98.6 6.3E-07 2.2E-11 74.5 12.2 99 557-655 27-130 (148)
158 2vyi_A SGTA protein; chaperone 98.5 3.6E-07 1.2E-11 74.0 9.8 99 557-655 11-111 (131)
159 3q49_B STIP1 homology and U bo 98.5 4.3E-07 1.5E-11 74.4 10.1 112 519-633 6-125 (137)
160 1a17_A Serine/threonine protei 98.5 1.7E-06 5.7E-11 73.6 13.3 126 489-618 15-145 (166)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 6E-07 2.1E-11 90.5 11.9 94 558-651 317-413 (457)
162 2xev_A YBGF; tetratricopeptide 98.5 4.5E-07 1.6E-11 73.4 9.0 96 528-626 8-112 (129)
163 2if4_A ATFKBP42; FKBP-like, al 98.5 3.3E-07 1.1E-11 88.3 9.2 148 489-656 181-331 (338)
164 1wao_1 Serine/threonine protei 98.5 2.8E-07 9.7E-12 93.2 9.0 118 528-648 12-134 (477)
165 3k9i_A BH0479 protein; putativ 98.5 1.2E-07 4E-12 75.3 5.0 90 535-625 3-96 (117)
166 4f3v_A ESX-1 secretion system 98.5 3.8E-07 1.3E-11 83.0 8.8 137 490-631 105-248 (282)
167 2fbn_A 70 kDa peptidylprolyl i 98.5 9.3E-08 3.2E-12 84.4 4.9 123 530-655 12-153 (198)
168 3q7a_A Farnesyltransferase alp 98.5 9.4E-05 3.2E-09 69.7 25.0 231 395-632 65-345 (349)
169 1hxi_A PEX5, peroxisome target 98.5 7.1E-07 2.4E-11 71.1 9.2 99 524-625 19-120 (121)
170 3rkv_A Putative peptidylprolyl 98.5 2.8E-07 9.5E-12 78.2 7.1 102 523-624 12-131 (162)
171 4b4t_Q 26S proteasome regulato 98.4 3.5E-06 1.2E-10 84.8 16.2 191 462-652 12-244 (434)
172 1elr_A TPR2A-domain of HOP; HO 98.4 4.2E-07 1.4E-11 73.6 7.7 96 559-654 5-109 (131)
173 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.6E-11 82.3 11.3 110 521-633 3-115 (281)
174 1dce_A Protein (RAB geranylger 98.4 7.7E-06 2.6E-10 84.2 18.2 171 468-642 43-244 (567)
175 3gw4_A Uncharacterized protein 98.4 4.4E-06 1.5E-10 73.8 14.4 96 524-619 68-176 (203)
176 3dss_A Geranylgeranyl transfer 98.4 1.2E-05 3.9E-10 75.6 17.5 186 466-655 41-269 (331)
177 3dss_A Geranylgeranyl transfer 98.4 2.8E-05 9.7E-10 72.9 20.1 181 470-654 90-305 (331)
178 2kck_A TPR repeat; tetratricop 98.4 1.4E-06 4.8E-11 68.2 9.6 101 521-624 5-111 (112)
179 1ihg_A Cyclophilin 40; ppiase 98.4 8.7E-07 3E-11 86.2 9.8 93 554-646 268-363 (370)
180 3rkv_A Putative peptidylprolyl 98.4 4.2E-07 1.4E-11 77.0 6.2 96 560-655 13-128 (162)
181 3ro3_A PINS homolog, G-protein 98.4 1.3E-06 4.5E-11 73.8 9.3 130 524-653 11-158 (164)
182 4gcn_A Protein STI-1; structur 98.4 2.1E-06 7.2E-11 69.0 9.8 96 524-622 10-115 (127)
183 3k9i_A BH0479 protein; putativ 98.4 3.5E-07 1.2E-11 72.5 5.1 85 570-654 2-91 (117)
184 1elr_A TPR2A-domain of HOP; HO 98.4 2.8E-06 9.4E-11 68.7 10.6 111 523-637 5-125 (131)
185 2xev_A YBGF; tetratricopeptide 98.3 4.4E-06 1.5E-10 67.4 11.6 94 561-654 5-106 (129)
186 1p5q_A FKBP52, FK506-binding p 98.3 4.4E-06 1.5E-10 80.3 12.5 116 458-577 151-283 (336)
187 2l6j_A TPR repeat-containing p 98.3 2.5E-07 8.5E-12 72.5 2.9 93 557-649 3-103 (111)
188 3ma5_A Tetratricopeptide repea 98.3 3.3E-06 1.1E-10 64.4 8.6 66 588-653 5-70 (100)
189 1klx_A Cysteine rich protein B 98.2 6.5E-06 2.2E-10 67.1 10.0 113 535-655 8-128 (138)
190 1zu2_A Mitochondrial import re 98.2 6.5E-07 2.2E-11 73.0 3.5 97 533-654 13-121 (158)
191 1wao_1 Serine/threonine protei 98.2 3.8E-06 1.3E-10 84.9 9.7 117 462-582 14-134 (477)
192 3n71_A Histone lysine methyltr 98.2 2.5E-06 8.7E-11 85.5 8.2 123 532-654 319-465 (490)
193 2hr2_A Hypothetical protein; a 98.2 1.8E-06 6.2E-11 70.5 5.2 103 525-630 14-142 (159)
194 2kat_A Uncharacterized protein 98.2 4.1E-06 1.4E-10 66.0 7.2 79 541-622 4-85 (115)
195 3bee_A Putative YFRE protein; 98.2 8.7E-06 3E-10 60.5 8.3 73 587-660 3-78 (93)
196 1na3_A Designed protein CTPR2; 98.1 7.4E-06 2.5E-10 61.1 7.8 82 557-638 8-91 (91)
197 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 8.4E-06 2.9E-10 82.1 10.0 99 558-656 268-383 (457)
198 4b4t_Q 26S proteasome regulato 98.1 2.7E-05 9.1E-10 78.2 13.8 159 494-652 11-203 (434)
199 2if4_A ATFKBP42; FKBP-like, al 98.1 6.1E-06 2.1E-10 79.3 8.5 151 455-625 180-334 (338)
200 1ihg_A Cyclophilin 40; ppiase 98.1 6.3E-06 2.2E-10 80.1 8.6 67 589-655 272-338 (370)
201 1dce_A Protein (RAB geranylger 98.1 5.9E-05 2E-09 77.6 16.1 151 501-655 43-223 (567)
202 3ro3_A PINS homolog, G-protein 98.1 7.7E-06 2.6E-10 69.0 7.6 132 490-621 12-160 (164)
203 1zu2_A Mitochondrial import re 98.0 6.6E-06 2.3E-10 67.0 5.9 124 497-652 12-146 (158)
204 2l6j_A TPR repeat-containing p 98.0 2E-05 6.7E-10 61.4 7.6 68 589-656 3-70 (111)
205 2kat_A Uncharacterized protein 97.9 4E-05 1.4E-09 60.2 7.6 78 576-653 3-82 (115)
206 1klx_A Cysteine rich protein B 97.9 0.00015 5.2E-09 58.9 11.2 111 501-620 9-127 (138)
207 1na3_A Designed protein CTPR2; 97.8 5.8E-05 2E-09 56.0 7.8 67 589-655 8-74 (91)
208 2kc7_A BFR218_protein; tetratr 97.7 4.6E-05 1.6E-09 57.8 5.9 79 564-650 6-87 (99)
209 3ly7_A Transcriptional activat 97.7 0.00016 5.4E-09 68.0 9.4 67 588-655 275-341 (372)
210 2kc7_A BFR218_protein; tetratr 97.6 5.4E-05 1.9E-09 57.4 5.0 62 595-656 5-67 (99)
211 3ma5_A Tetratricopeptide repea 97.6 7.3E-05 2.5E-09 56.8 5.2 68 557-624 6-75 (100)
212 3lvg_A Clathrin heavy chain 1; 97.5 9E-06 3.1E-10 77.5 -1.0 224 88-335 53-276 (624)
213 3qww_A SET and MYND domain-con 97.5 0.00019 6.5E-09 70.7 7.9 62 591-652 341-410 (433)
214 3n71_A Histone lysine methyltr 97.5 0.00022 7.4E-09 71.5 8.3 122 497-618 319-463 (490)
215 3ly7_A Transcriptional activat 97.5 0.0029 9.8E-08 59.6 15.1 138 485-625 192-345 (372)
216 1wy6_A Hypothetical protein ST 97.5 0.009 3.1E-07 45.9 14.6 141 497-656 17-157 (172)
217 3qwp_A SET and MYND domain-con 97.3 0.00041 1.4E-08 68.4 8.3 85 568-652 297-399 (429)
218 3lvg_A Clathrin heavy chain 1; 97.2 0.00017 5.7E-09 69.1 3.7 211 20-242 80-325 (624)
219 1pc2_A Mitochondria fission pr 97.1 0.00063 2.2E-08 54.7 5.6 93 535-629 11-110 (152)
220 3u64_A Protein TP_0956; tetrat 97.1 0.0015 5.1E-08 58.7 8.4 86 575-660 180-276 (301)
221 3qww_A SET and MYND domain-con 97.0 0.0017 5.7E-08 64.0 8.1 93 535-627 311-424 (433)
222 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0026 8.8E-08 48.4 7.5 75 557-631 4-87 (104)
223 3bee_A Putative YFRE protein; 96.9 0.0072 2.5E-07 44.5 9.5 74 557-631 5-83 (93)
224 1pc2_A Mitochondria fission pr 96.9 0.0032 1.1E-07 50.7 7.5 67 588-654 30-101 (152)
225 3qwp_A SET and MYND domain-con 96.8 0.0033 1.1E-07 62.0 9.2 100 529-628 294-414 (429)
226 2v5f_A Prolyl 4-hydroxylase su 96.7 0.0047 1.6E-07 46.9 7.1 66 589-654 4-76 (104)
227 3mkq_A Coatomer beta'-subunit; 96.5 0.06 2.1E-06 58.7 17.3 46 465-514 663-708 (814)
228 1qsa_A Protein (soluble lytic 96.3 1.2 4.1E-05 45.8 27.7 329 262-630 16-355 (618)
229 1nzn_A CGI-135 protein, fissio 96.0 0.083 2.8E-06 40.8 10.6 92 536-629 15-113 (126)
230 3u64_A Protein TP_0956; tetrat 96.0 0.0073 2.5E-07 54.3 5.1 107 537-652 178-297 (301)
231 3mkq_B Coatomer subunit alpha; 95.9 0.44 1.5E-05 39.4 14.8 101 364-481 16-116 (177)
232 1nzn_A CGI-135 protein, fissio 95.8 0.015 5.3E-07 44.8 5.7 81 575-655 18-105 (126)
233 1wy6_A Hypothetical protein ST 95.8 0.45 1.5E-05 36.8 13.2 58 493-551 97-154 (172)
234 3mkq_A Coatomer beta'-subunit; 95.7 0.64 2.2E-05 50.5 20.6 131 326-481 633-763 (814)
235 4h7y_A Dual specificity protei 95.7 0.035 1.2E-06 43.9 7.1 108 519-628 10-132 (161)
236 1y8m_A FIS1; mitochondria, unk 95.3 0.16 5.5E-06 39.9 9.8 72 555-626 36-113 (144)
237 4gns_B Protein CSD3, chitin bi 95.1 0.054 1.9E-06 56.7 8.6 53 598-650 345-397 (754)
238 3lpz_A GET4 (YOR164C homolog); 95.0 2.2 7.5E-05 39.5 20.1 168 456-652 37-215 (336)
239 3o48_A Mitochondria fission 1 95.0 0.073 2.5E-06 41.2 6.9 73 555-627 37-115 (134)
240 4h7y_A Dual specificity protei 94.7 0.091 3.1E-06 41.6 6.9 98 485-585 11-121 (161)
241 4ady_A RPN2, 26S proteasome re 94.6 6 0.0002 42.5 39.1 256 360-618 381-657 (963)
242 3mkq_B Coatomer subunit alpha; 94.5 1.7 5.8E-05 35.9 16.2 128 463-616 14-141 (177)
243 3ffl_A Anaphase-promoting comp 94.1 0.13 4.4E-06 41.7 6.6 120 517-650 13-148 (167)
244 4ady_A RPN2, 26S proteasome re 93.1 11 0.00038 40.5 31.4 267 328-601 380-672 (963)
245 4b4t_P 26S proteasome regulato 92.8 1.2 4.2E-05 43.9 12.8 93 560-652 139-246 (445)
246 1y8m_A FIS1; mitochondria, unk 91.2 1.8 6.2E-05 34.0 9.3 82 574-655 22-108 (144)
247 3o48_A Mitochondria fission 1 91.0 1 3.5E-05 34.9 7.6 69 586-654 36-108 (134)
248 1zbp_A Hypothetical protein VP 90.3 2.9 0.0001 37.1 10.9 118 496-624 6-134 (273)
249 2ff4_A Probable regulatory pro 90.2 0.67 2.3E-05 44.8 7.7 60 593-652 174-233 (388)
250 4gns_B Protein CSD3, chitin bi 89.9 2.8 9.6E-05 44.0 12.4 52 531-585 346-398 (754)
251 1qsa_A Protein (soluble lytic 88.8 23 0.0008 36.4 34.8 348 226-617 77-440 (618)
252 3ffl_A Anaphase-promoting comp 88.6 1.9 6.4E-05 35.0 7.8 59 457-515 23-91 (167)
253 4fhn_B Nucleoporin NUP120; pro 88.4 9.4 0.00032 43.0 16.2 52 358-410 817-868 (1139)
254 1zbp_A Hypothetical protein VP 87.7 0.89 3.1E-05 40.3 5.8 53 600-652 7-59 (273)
255 2wpv_A GET4, UPF0363 protein Y 87.5 17 0.00059 33.4 22.3 168 457-652 36-216 (312)
256 3lpz_A GET4 (YOR164C homolog); 87.3 18 0.00063 33.4 24.0 144 199-364 21-178 (336)
257 1v54_E Cytochrome C oxidase po 86.8 2.7 9.1E-05 30.5 6.7 61 504-566 27-87 (109)
258 2wpv_A GET4, UPF0363 protein Y 86.6 19 0.00067 33.0 22.4 141 199-361 22-173 (312)
259 2uwj_G Type III export protein 86.4 6.1 0.00021 28.5 8.2 58 99-159 49-106 (115)
260 2ff4_A Probable regulatory pro 85.9 3.8 0.00013 39.5 10.0 70 492-562 176-249 (388)
261 1v54_E Cytochrome C oxidase po 84.8 9.3 0.00032 27.8 8.6 51 267-317 25-75 (109)
262 3ltm_A Alpha-REP4; protein eng 84.4 18 0.00063 30.8 18.3 53 359-412 132-184 (211)
263 4a1g_A Mitotic checkpoint seri 84.2 3.3 0.00011 33.1 7.0 95 2-98 25-141 (152)
264 2wvi_A Mitotic checkpoint seri 83.8 1.7 5.9E-05 35.3 5.3 96 2-97 18-135 (164)
265 4fhn_B Nucleoporin NUP120; pro 83.5 7.4 0.00025 43.9 12.3 149 490-655 815-969 (1139)
266 4b4t_R RPN7, 26S proteasome re 82.6 4.1 0.00014 39.9 8.7 91 560-650 133-234 (429)
267 2p58_C Putative type III secre 81.7 11 0.00039 27.2 8.0 56 38-95 22-77 (116)
268 3ltj_A Alpharep-4; protein eng 81.6 23 0.00079 29.9 18.5 34 378-412 146-179 (201)
269 2y69_E Cytochrome C oxidase su 81.2 5.6 0.00019 30.7 6.7 60 505-566 71-130 (152)
270 2uwj_G Type III export protein 78.5 11 0.00036 27.3 7.0 76 38-117 21-96 (115)
271 3esl_A Checkpoint serine/threo 78.2 20 0.00069 30.2 10.0 45 574-618 95-143 (202)
272 1n11_A Ankyrin; clathrin, BAND 76.9 28 0.00096 33.9 12.9 205 29-247 17-235 (437)
273 1wdy_A 2-5A-dependent ribonucl 76.7 31 0.0011 30.9 12.4 56 230-286 154-213 (285)
274 1oyz_A Hypothetical protein YI 75.6 45 0.0015 29.9 20.6 81 187-267 139-221 (280)
275 2y69_E Cytochrome C oxidase su 75.1 24 0.00084 27.3 8.6 62 267-329 68-129 (152)
276 3ltm_A Alpha-REP4; protein eng 74.8 38 0.0013 28.7 20.0 110 351-468 93-202 (211)
277 1wdy_A 2-5A-dependent ribonucl 74.7 25 0.00087 31.5 11.2 21 96-116 9-29 (285)
278 1n11_A Ankyrin; clathrin, BAND 74.0 45 0.0015 32.4 13.5 177 64-248 17-203 (437)
279 4b4t_P 26S proteasome regulato 72.0 77 0.0026 31.0 20.6 96 490-585 140-245 (445)
280 4aez_C MAD3, mitotic spindle c 70.3 9.2 0.00032 32.8 6.2 96 2-97 71-189 (223)
281 3ltj_A Alpharep-4; protein eng 70.2 48 0.0016 27.8 18.6 18 250-267 88-105 (201)
282 3esl_A Checkpoint serine/threo 70.0 33 0.0011 28.9 9.3 53 503-556 95-148 (202)
283 3txn_A 26S proteasome regulato 68.1 86 0.0029 30.0 25.3 218 424-655 104-345 (394)
284 4b4t_R RPN7, 26S proteasome re 67.5 19 0.00065 35.2 8.8 97 455-551 132-237 (429)
285 3bqo_A Telomeric repeat-bindin 67.0 34 0.0012 28.5 8.4 50 596-645 123-172 (211)
286 3jxi_A Vanilloid receptor-rela 64.3 25 0.00085 31.2 8.5 88 30-118 9-119 (260)
287 3eu9_A Huntingtin-interacting 61.0 61 0.0021 27.9 10.4 51 227-277 180-232 (240)
288 4a1g_A Mitotic checkpoint seri 60.5 55 0.0019 26.1 8.5 50 506-556 84-134 (152)
289 3kea_A K1L; tropism, ANK repea 58.7 94 0.0032 27.9 11.5 17 68-84 38-54 (285)
290 1k1a_A B-cell lymphoma 3-encod 57.2 94 0.0032 26.7 12.1 86 30-116 13-103 (241)
291 1k1a_A B-cell lymphoma 3-encod 57.0 51 0.0018 28.5 9.2 30 126-155 12-41 (241)
292 2wvi_A Mitotic checkpoint seri 55.6 77 0.0026 25.7 8.7 50 506-556 79-129 (164)
293 3eiq_C Programmed cell death p 55.5 1.4E+02 0.0047 28.1 15.3 68 355-422 219-291 (358)
294 2nsz_A Programmed cell death p 55.4 58 0.002 25.1 7.9 63 226-288 12-79 (129)
295 4b4t_S RPN3, 26S proteasome re 54.8 22 0.00076 35.2 6.5 68 558-625 231-305 (523)
296 1ya0_A SMG-7 transcript varian 53.5 34 0.0011 34.0 7.7 56 596-651 158-213 (497)
297 3eu9_A Huntingtin-interacting 53.2 1.1E+02 0.0037 26.2 11.8 17 296-312 216-232 (240)
298 4b4t_S RPN3, 26S proteasome re 53.2 46 0.0016 33.0 8.4 117 522-649 231-366 (523)
299 3txn_A 26S proteasome regulato 53.1 1.6E+02 0.0054 28.1 20.2 166 389-559 104-290 (394)
300 3jxi_A Vanilloid receptor-rela 53.0 17 0.0006 32.2 5.4 93 260-352 10-120 (260)
301 2qx5_A Nucleoporin NIC96; mRNA 51.8 2.2E+02 0.0076 29.4 21.3 81 327-410 299-382 (661)
302 2etb_A Transient receptor pote 50.9 62 0.0021 28.4 8.7 87 29-117 5-115 (256)
303 2zu6_B Programmed cell death p 49.6 1.6E+02 0.0053 27.0 11.0 65 490-556 169-235 (307)
304 2ion_A PDCD4, programmed cell 48.5 48 0.0016 26.6 6.5 62 227-288 15-81 (152)
305 2r9g_A AAA ATPase, central reg 46.3 1.3E+02 0.0045 25.2 9.6 62 389-451 16-85 (204)
306 3kea_A K1L; tropism, ANK repea 45.9 1.7E+02 0.0056 26.2 11.9 140 30-178 35-181 (285)
307 2ion_A PDCD4, programmed cell 45.4 1E+02 0.0035 24.6 8.0 64 356-419 12-80 (152)
308 2nsz_A Programmed cell death p 44.1 1.1E+02 0.0037 23.6 9.3 65 356-420 10-79 (129)
309 2zu6_B Programmed cell death p 43.8 1.9E+02 0.0065 26.4 14.0 196 224-420 6-238 (307)
310 3b7b_A Euchromatic histone-lys 43.4 1.5E+02 0.0053 25.2 12.2 80 30-114 15-99 (237)
311 2p58_C Putative type III secre 42.9 95 0.0032 22.6 10.7 50 363-414 50-99 (116)
312 1ug3_A EIF4GI, eukaryotic prot 42.2 1.6E+02 0.0056 27.3 10.2 26 194-219 15-40 (339)
313 2fu4_A Ferric uptake regulatio 42.1 66 0.0023 22.1 5.9 62 144-206 6-68 (83)
314 3ljn_A Hypothetical protein; a 42.1 2.2E+02 0.0074 26.5 12.2 14 201-214 181-194 (364)
315 2d2s_A Exocyst complex compone 40.8 83 0.0028 27.4 7.4 25 627-651 94-118 (235)
316 2d2s_A Exocyst complex compone 39.9 1.1E+02 0.0036 26.8 7.9 22 258-279 24-45 (235)
317 2rfa_A Transient receptor pote 39.4 1.6E+02 0.0056 24.9 9.5 169 43-215 16-219 (232)
318 3bge_A Predicted ATPase; struc 39.1 1.2E+02 0.0041 25.4 7.4 40 395-434 18-57 (201)
319 4aez_C MAD3, mitotic spindle c 38.2 1.5E+02 0.0051 25.5 8.2 51 505-556 132-183 (223)
320 3bu8_A Telomeric repeat-bindin 37.5 35 0.0012 28.9 4.0 50 538-587 88-143 (235)
321 3b7b_A Euchromatic histone-lys 37.3 1.4E+02 0.0049 25.4 8.8 14 201-214 52-65 (237)
322 3ctd_A Putative ATPase, AAA fa 36.0 2E+02 0.0068 24.3 8.7 66 386-451 34-107 (213)
323 2pnn_A Transient receptor pote 35.7 66 0.0022 28.6 6.4 24 329-352 105-128 (273)
324 1mzb_A Ferric uptake regulatio 35.1 81 0.0028 24.5 5.9 62 144-206 7-69 (136)
325 3d9h_A CDNA FLJ77766, highly s 34.0 2.5E+02 0.0086 24.9 10.1 21 60-80 14-34 (285)
326 2w57_A Ferric uptake regulatio 34.0 86 0.0029 24.9 6.0 63 143-206 5-68 (150)
327 2xig_A Ferric uptake regulatio 34.0 1.4E+02 0.0048 23.7 7.2 64 142-206 14-77 (150)
328 4gq2_M Nucleoporin NUP120; bet 33.8 2.1E+02 0.0071 31.4 10.8 29 592-620 899-927 (950)
329 1ug3_A EIF4GI, eukaryotic prot 33.4 75 0.0026 29.6 6.4 26 357-382 15-40 (339)
330 4ets_A Ferric uptake regulatio 33.0 1.7E+02 0.0057 23.6 7.6 69 137-206 14-85 (162)
331 3ygs_P Procaspase 9; apoptosis 32.7 55 0.0019 23.7 4.2 38 367-404 51-88 (97)
332 2fe3_A Peroxide operon regulat 32.6 74 0.0025 25.1 5.4 63 144-207 11-73 (145)
333 1bd8_A P19INK4D CDK4/6 inhibit 32.3 1.8E+02 0.006 22.6 8.1 17 67-83 8-24 (156)
334 1bd8_A P19INK4D CDK4/6 inhibit 32.1 98 0.0033 24.3 6.3 81 29-115 5-91 (156)
335 3l6a_A Eukaryotic translation 31.1 3.4E+02 0.012 25.5 12.2 61 458-520 16-81 (364)
336 2crb_A Nuclear receptor bindin 31.0 63 0.0022 22.9 3.9 24 627-650 18-41 (97)
337 2w2u_A Hypothetical P60 katani 30.8 77 0.0026 22.1 4.4 19 600-618 29-47 (83)
338 1oyz_A Hypothetical protein YI 29.7 2.9E+02 0.01 24.3 23.1 81 319-399 139-221 (280)
339 2fu4_A Ferric uptake regulatio 29.4 1.4E+02 0.0047 20.4 8.1 62 276-338 6-68 (83)
340 2v6y_A AAA family ATPase, P60 28.7 86 0.0029 21.8 4.4 19 600-618 21-39 (83)
341 3ljn_A Hypothetical protein; a 28.6 2.3E+02 0.008 26.3 9.3 57 229-285 58-114 (364)
342 3bqo_A Telomeric repeat-bindin 27.9 65 0.0022 26.9 4.1 24 63-86 122-145 (211)
343 2xig_A Ferric uptake regulatio 27.3 2.3E+02 0.0079 22.4 8.0 63 275-338 15-77 (150)
344 2w57_A Ferric uptake regulatio 26.9 2.3E+02 0.008 22.3 8.2 63 276-339 6-69 (150)
345 3ygs_P Procaspase 9; apoptosis 26.7 80 0.0027 22.8 4.1 34 73-106 52-85 (97)
346 1mzb_A Ferric uptake regulatio 26.7 2.2E+02 0.0076 21.9 7.6 61 277-338 8-69 (136)
347 2b7e_A PRE-mRNA processing pro 26.1 94 0.0032 20.0 3.8 33 40-72 3-36 (59)
348 2fe3_A Peroxide operon regulat 26.1 2E+02 0.0067 22.6 6.8 34 435-468 37-70 (145)
349 3eyy_A Putative iron uptake re 25.6 85 0.0029 24.8 4.5 60 144-205 8-67 (145)
350 2pnn_A Transient receptor pote 25.1 1.7E+02 0.0059 25.7 7.2 88 29-117 16-126 (273)
351 3hra_A Ankyrin repeat family p 24.0 2.9E+02 0.01 22.5 8.9 50 64-114 42-94 (201)
352 3aji_A 26S proteasome non-ATPa 23.5 3.3E+02 0.011 22.9 11.2 49 65-114 10-62 (231)
353 2etb_A Transient receptor pote 23.2 1.6E+02 0.0056 25.5 6.6 28 259-286 6-33 (256)
354 3eyy_A Putative iron uptake re 23.0 1.2E+02 0.0041 23.9 4.9 46 123-169 21-66 (145)
355 2o03_A Probable zinc uptake re 22.8 1.1E+02 0.0036 23.6 4.5 44 126-169 16-59 (131)
356 4ets_A Ferric uptake regulatio 22.6 2.2E+02 0.0074 22.9 6.5 58 411-469 25-84 (162)
357 4gq2_M Nucleoporin NUP120; bet 22.5 5.1E+02 0.017 28.3 11.3 52 95-147 816-867 (950)
358 3t5v_B Nuclear mRNA export pro 22.5 65 0.0022 31.5 3.9 27 626-652 222-248 (455)
359 2br9_A 14-3-3E, 14-3-3 protein 22.4 3.8E+02 0.013 23.2 10.0 48 606-653 146-202 (234)
360 2p1h_A APAF-1, apoptotic prote 22.3 66 0.0022 23.0 3.0 34 71-104 49-82 (94)
361 1wgl_A TOLL-interacting protei 22.1 1.1E+02 0.0038 19.6 3.6 24 131-154 34-57 (59)
362 3mwm_A ZUR, putative metal upt 21.9 96 0.0033 24.2 4.1 32 127-158 20-51 (139)
363 4g8k_A 2-5A-dependent ribonucl 21.5 4.6E+02 0.016 23.8 15.8 278 62-353 26-329 (337)
364 2p1h_A APAF-1, apoptotic prote 21.3 2.2E+02 0.0076 20.1 5.9 37 101-137 48-84 (94)
365 3ubw_A 14-3-3E, 14-3-3 protein 20.9 4.3E+02 0.015 23.3 11.0 48 606-653 172-228 (261)
366 2y1l_E Darpin-8.4; hydrolase-i 20.6 3.2E+02 0.011 21.6 9.3 81 29-114 17-102 (169)
367 2rpa_A Katanin P60 ATPase-cont 20.4 1.1E+02 0.0039 21.0 3.6 24 629-652 17-40 (78)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-39 Score=342.21 Aligned_cols=501 Identities=10% Similarity=-0.027 Sum_probs=307.8
Q ss_pred HHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHH
Q 043580 99 YIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 178 (665)
..+.|.+..+...+..++.++...|+.++..|.+.|++++|..+|++|.+ ..|+..++..++.+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44567777777777777777888889999999999999999999998885 4677788888888888888888888888
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Q 043580 179 GLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTM 258 (665)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 258 (665)
+.+.. .+++..+++.++.+|.+.|++++|.++|+++...+.. ..++.+.++. +.-...+..+|+.+
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHH
Confidence 77653 3567778888888888888888888888754322200 0000000000 00112346788888
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcccchhhHHH--H-HHHHHHhCCCCchhHHHHHHHHHHh
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAPN-DVMIVDLISACGRAMAFGEGLQ--I-HSIIVKAGFDCYDFIQATIIHFYAA 334 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (665)
+.+|.+.|++++|+++|++|.+. .|+ ...+..+...+...+..+.+.. + +..+...+
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------- 267 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED----------------- 267 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch-----------------
Confidence 99999999999999999998874 343 3444444443333222211110 0 11221111
Q ss_pred cCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043580 335 CGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--RDVYSWSAMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
..+...+|+.++..|.+.|++++|.++|+.+.+ ++..+|+.++..|.+.|++++|+.+|+++.+
T Consensus 268 --------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 268 --------------AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp --------------HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 122223444455555666666666666666654 4566666666666666666666666666665
Q ss_pred CCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHH
Q 043580 413 AGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWN 491 (665)
Q Consensus 413 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 491 (665)
.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++... +.+..+|+
T Consensus 334 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 411 (597)
T 2xpi_A 334 ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411 (597)
T ss_dssp HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 43 2345566666666666666666666666666432 334556666666677777777777777666554 33455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhh
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGR 570 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 570 (665)
.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .| ++.+|..++.+|.+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHH
Confidence 77777777777777777777766653 445666666777777777777777777776643 34 56667777777777
Q ss_pred cCChHHHHHHHHhCC-------CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 571 AGQLEDAEEVIRSMP-------MKAD--VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
.|++++|.++++++. ..|+ ..+|..++.+|.+.|++++|...+++++++.|+++..+..++.+|...|+++
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 777777777766663 2454 5666777777777777777777777777777776666777777777777777
Q ss_pred HHHHHHHHHHhCC
Q 043580 642 DAFSIRKEMRDCG 654 (665)
Q Consensus 642 ~A~~~~~~~~~~~ 654 (665)
+|.+.++++++..
T Consensus 568 ~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 568 LAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 7777777766643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-39 Score=339.84 Aligned_cols=466 Identities=9% Similarity=0.012 Sum_probs=361.8
Q ss_pred hhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHH
Q 043580 131 AQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEAR 210 (665)
Q Consensus 131 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 210 (665)
...|.+..+...+..+. .++...|+.++..+.+.|++++|..+++.+... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34455555555555443 357889999999999999999999999999854 457788889999999999999999
Q ss_pred HHHhhcc--CCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHH
Q 043580 211 SLFDEMK--ERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV 288 (665)
Q Consensus 211 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 288 (665)
++|+.+. .++..+++.++.+|.+.|++++|.++|+++...+.. ..++.+.++ ...|.+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~-----------~~~~~~~~~~ 201 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLM-----------QDGGIKLEAS 201 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----ccccccccc-----------cccccchhHH
Confidence 9999984 577888999999999999999999999864433211 111111111 1235667888
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCC
Q 043580 289 MIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGM 368 (665)
Q Consensus 289 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (665)
++..++..+.+.|++++|...|+++.+.+. .+...+..+...+...+..+.+.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~-------------------------- 254 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDL-------------------------- 254 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHH--------------------------
Confidence 999999999999999999999999988752 23333333333222221111110
Q ss_pred HHHHHHH-HhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 369 IEDARQL-FNNMQKR----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 369 ~~~a~~~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
+..+ +..+... ...+|+.++..|.+.|++++|.++|+++.+. +++..++..++..+.+.|++++|..+++
T Consensus 255 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 255 ---VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp ---HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0000 1112111 2345666788888999999999999998875 5889999999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.+.+.+ +.+..++..++.++.+.|++++|..+++.+... +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+.
T Consensus 330 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 407 (597)
T 2xpi_A 330 KILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG 407 (597)
T ss_dssp HHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH
Confidence 999876 346788999999999999999999999999876 4567799999999999999999999999999864 4567
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
.+|..++.+|.+.|++++|.++|+++.+. .| +..+|..++.+|.+.|++++|.++++++. .+.++.+|..++..
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARL---FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 89999999999999999999999999853 56 88999999999999999999999999986 44578999999999
Q ss_pred HHhcCCHHHHHHHHHHHhcc------CCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 600 SRIHGNVEVGERAAKSLAGL------QPSH-GPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
|.+.|++++|...++++++. +|+. ...+..++.+|.+.|++++|.+.++++.+.+.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999887 5554 56789999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-26 Score=229.56 Aligned_cols=372 Identities=11% Similarity=0.110 Sum_probs=256.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAP-NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGR 337 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 337 (665)
...+.+.|++++|.+.++++.+. .| +...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455666666666666666553 23 33344444445556666666666666665543 3445556666666666666
Q ss_pred hHHHHHHHHhcc--CC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 043580 338 INLARLQFELGI--KD-HIASWNALIAGFIRNGMIEDARQLFNNMQK--R-DVYSWSAMISGYAQNEQPNMALELFHGMV 411 (665)
Q Consensus 338 ~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 411 (665)
+++|...|++.+ .| +..+|..+..++.+.|++++|.+.|+.+.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666665432 22 334566666677777777777777766542 2 34456667777777788888888887777
Q ss_pred HCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchH
Q 043580 412 DAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPW 490 (665)
Q Consensus 412 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 490 (665)
+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++.....| +..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 642 2345667777777777888888888887777654 23345667777788888888888888877766634 45677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 491 NAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 491 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..+...+...|++++|...++++.+.+ +.+..++..+...+.+.|++++|.+.|+++.+. .| +..++..++.++.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHH
Confidence 778888888888888888888887753 335667778888888888888888888888754 45 6777888888888
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 570 RAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
..|++++|...++++. ..| +..++..++.++.+.|++++|...++++++++|+.+..+..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888888775 223 567778888888888888888888888888888888888888887776653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.3e-26 Score=226.84 Aligned_cols=353 Identities=12% Similarity=0.108 Sum_probs=310.2
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHH
Q 043580 294 ISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIE 370 (665)
Q Consensus 294 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 370 (665)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|+++.|...++..+ +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445677899999999999998875 4455677788889999999999999987544 456778999999999999999
Q ss_pred HHHHHHhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHccCcHHHHHHHHHHHH
Q 043580 371 DARQLFNNMQK--R-DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE-ITMVSVFCAIASSGTLKEGRWAHEYVL 446 (665)
Q Consensus 371 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 446 (665)
+|...|+.+.+ | +...|..+..++.+.|++++|...|+++.+. .|+. ..+..+...+...|++++|...++.+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998753 3 5567999999999999999999999999985 4554 456667788889999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 043580 447 NNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITF 525 (665)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 525 (665)
+.. +.+...+..+...+...|++++|...|+++....| +...|..+...+...|++++|...+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 864 33467888999999999999999999999988744 46688899999999999999999999999864 4467889
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRI 602 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 602 (665)
..+...+...|++++|.+.|+++.+ ..| ++.++..++.++.+.|++++|.+.++++. .+.+..++..++..+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999985 467 68899999999999999999999999986 45688999999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 603 HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++++..
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=8.5e-27 Score=235.98 Aligned_cols=185 Identities=9% Similarity=0.133 Sum_probs=165.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCc---------HHHHHHHHHHHHHcCCCCChh
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT---------LKEGRWAHEYVLNNSITLNDN 455 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 455 (665)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. .+.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788889999999999999999999999999999999999999886553 678899999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
+|+++|.+|++.|++++|.++|++|... .|+..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999876 78889999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR 570 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 570 (665)
+.|+.++|.++|++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 999999999999999988 999999999998888765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9.9e-27 Score=235.49 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=168.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCC---------hHHHHHHHHHHHHHhcCCchh
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGG---------IWECRMLHGLVIKLMIDGFVI 191 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 191 (665)
..++.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHH
Q 043580 192 ISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEA 271 (665)
Q Consensus 192 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (665)
+|++||.+|++.|++++|.++|++|.+.+ ..||..+|++||.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCCHHHH
Confidence 99999999999999999999999887543 346688899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 043580 272 LTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAAC 335 (665)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (665)
.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..+++.++..++..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999888888888888877654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-23 Score=218.72 Aligned_cols=424 Identities=11% Similarity=-0.006 Sum_probs=292.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM 301 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 301 (665)
+......+.+.|++++|+..|+++.. |+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+...+...|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666543 555566666666666666666666666666532 223455666666666666
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH---h-ccCCchhhHHHH---HHHHHhcCCHHHHHH
Q 043580 302 AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE---L-GIKDHIASWNAL---IAGFIRNGMIEDARQ 374 (665)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~-~~~~~~~~~~~l---~~~~~~~~~~~~a~~ 374 (665)
++++|...++.+.+.+. ++.......+..+........+.+.+. . ...|+...+..- ............+..
T Consensus 88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 66666666666665542 222222222222222222222211110 0 000000000000 000000111111111
Q ss_pred HHhhcCC---------C-CcchHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCCC--------ChhHHHHHHHH
Q 043580 375 LFNNMQK---------R-DVYSWSAMISGYAQ---NEQPNMALELFHGMVD-----AGVKP--------NEITMVSVFCA 428 (665)
Q Consensus 375 ~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll~~ 428 (665)
.+..... + +...+......+.. .|++++|+..|+++.+ ....| +...+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2222111 1 13344444554554 8999999999999887 32222 23466777888
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHH
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTL 507 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 507 (665)
+...|++++|...++.+.+.... ...+..+..++...|++++|...++++... +.+...+..+...+...|++++|.
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999999887644 778888999999999999999999998887 446778899999999999999999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 508 KIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 508 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
..++++.+.. +.+...+..+...+...|++++|...++++.+. .| +..++..++.+|...|++++|...++++.
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999864 446788999999999999999999999999864 56 67889999999999999999999998875
Q ss_pred ---CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 586 ---MKAD----VVIWGTLLAASRI---HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 586 ---~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..+. ...|..++.++.. .|++++|...++++++..|+++..+..++.+|...|++++|.+.++++++...
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 1122 3488899999999 99999999999999999999999999999999999999999999999988654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.1e-23 Score=212.84 Aligned_cols=446 Identities=10% Similarity=0.004 Sum_probs=299.7
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHh
Q 043580 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYC 201 (665)
Q Consensus 122 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (665)
.+......+.+.|++++|...|+++.+.+ |+..+|..+..++...|+++.|...++.+++.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45566777888889999999999988865 688888888888888899999988888888775 345567777888888
Q ss_pred ccCCHHHHHHHHhhccCC---CcccHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHhhcCChhHHHHH
Q 043580 202 VCSSLVEARSLFDEMKER---NIVSWNVMLNGFAKAGLVELARELFERIPS----KDVVSWGTMIDGYLQVERLSEALTM 274 (665)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (665)
..|++++|...|+.+.+. +......++..+........+.+.+..+.. ++...+..-.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------- 149 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK--------------- 149 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh---------------
Confidence 888888888888777642 222222222222222111111111111110 0000000000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchh
Q 043580 275 YRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIA 354 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (665)
.........|+.......+..+........ ...+.+..
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~ 187 (514)
T 2gw1_A 150 -ERKDKQENLPSVTSMASFFGIFKPELTFAN-----------------------------------------YDESNEAD 187 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSS-----------------------------------------CCSSCHHH
T ss_pred -HHHhhccCCchhHHHHHHHhhcCHHHHHHH-----------------------------------------hcCCcHHH
Confidence 000000112222211111111110000000 00011122
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 043580 355 SWNALIAGFIR---NGMIEDARQLFNNMQK----------------R-DVYSWSAMISGYAQNEQPNMALELFHGMVDAG 414 (665)
Q Consensus 355 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 414 (665)
.+......+.. .|++++|...|+.+.+ + +...+..+...+...|++++|+..++++.+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 23333333332 5556666665555433 1 34467778888888888888888888888754
Q ss_pred CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHH
Q 043580 415 VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAI 493 (665)
Q Consensus 415 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l 493 (665)
|+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++... +.+...+..+
T Consensus 268 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 268 --PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp --CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred --ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 336777778888888888888888888887654 334567788889999999999999999998877 4456788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhh
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLG 569 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~ 569 (665)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.|+ ...+..++.++.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 999999999999999999998864 456788899999999999999999999998864222222 338889999999
Q ss_pred h---cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 570 R---AGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 570 ~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
. .|++++|...++++. .+.+...+..+..++...|++++|...+++++++.|+++..+..+.
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9 999999999999875 3346788899999999999999999999999999999888766553
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.4e-22 Score=210.48 Aligned_cols=420 Identities=11% Similarity=0.051 Sum_probs=309.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043580 222 VSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACG 298 (665)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (665)
..+..+...+.+.|++++|+..|+++.. .+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4566777778888888888888887753 356778888888888888888888888887742 335667777777888
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCC------chhhHHHHHHHHHhcCCHHHH
Q 043580 299 RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKD------HIASWNALIAGFIRNGMIEDA 372 (665)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a 372 (665)
..|++++|...++ .... .|+ .....+..+...+....+...++..+.. ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 8888888888885 3222 121 1122233444455556677776654331 111223444555666677777
Q ss_pred HHHHhhcCCCCcc---hHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCCh--------hHHHHHHHHHHccC
Q 043580 373 RQLFNNMQKRDVY---SWSAMISGYAQN--------EQPNMALELFHGMVDAGVKPNE--------ITMVSVFCAIASSG 433 (665)
Q Consensus 373 ~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~--------~~~~~ll~~~~~~~ 433 (665)
...+......+.. ....+...+... |++++|+.+++++.+. .|+. ..+..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 6666665554433 333333333322 4788999999998874 3442 24566667788889
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSD 512 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 512 (665)
++++|...++.+.+.. |+...+..+...+...|++++|...++++... +.+..++..+...+...|++++|...+++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999998865 44777888999999999999999999998876 44567889999999999999999999999
Q ss_pred HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----C
Q 043580 513 LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----K 587 (665)
Q Consensus 513 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 587 (665)
+.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|...++++.. .
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99864 446778899999999999999999999999865 56 678899999999999999999999988751 1
Q ss_pred ----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 588 ----ADVVIWGTLLAASRIH----------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 588 ----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.....+.....++... |++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223345556677777 99999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 043580 654 GM 655 (665)
Q Consensus 654 ~~ 655 (665)
..
T Consensus 492 ~~ 493 (537)
T 3fp2_A 492 AR 493 (537)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=8.3e-22 Score=201.37 Aligned_cols=335 Identities=12% Similarity=0.059 Sum_probs=245.3
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHh
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIR 365 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 365 (665)
+...+..+...+.+.|++++|...++.+.+.. + .+...+..+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p-------------------------------~~~~~~~~l~~~~~~ 72 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-P-------------------------------DNYIAYYRRATVFLA 72 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C-------------------------------ccHHHHHHHHHHHHH
Confidence 34455555555566666666666666555542 2 234444555555555
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh----hHHHHH------------H
Q 043580 366 NGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE----ITMVSV------------F 426 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l 426 (665)
.|++++|...|+.+.+ .+..++..+..+|.+.|++++|...|+++.+. .|+. ..+..+ .
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555432 24556666667777777777777777776663 3332 233222 4
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHH
Q 043580 427 CAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 505 (665)
..+...|++++|...++.+.+.. +.+...+..++.+|.+.|++++|...|+++... +.+..+|..+...+...|++++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44777888899998888887754 345677888899999999999999999988876 5567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHH------------HHHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHh
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGV------------LSTCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLL 568 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 568 (665)
|+..++++.... +.+...+..+ ...+...|++++|..+|+++.+. .|+ ...+..++.++
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 999999998753 3344444444 78899999999999999999864 564 45788899999
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH------------HH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN------------IY 634 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~ 634 (665)
.+.|++++|...++++. .+.+...|..++.+|...|++++|...++++++++|+++..+..++. .|
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 99999999999999975 34478999999999999999999999999999999999999999984 45
Q ss_pred HhcC-----ChhHHHHHHHH-HHhCCCccCC
Q 043580 635 ADAG-----RWEDAFSIRKE-MRDCGMKRLP 659 (665)
Q Consensus 635 ~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 659 (665)
...| +.+++++.|++ .+.....+.+
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 5556 66788888886 5555444433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1e-20 Score=198.02 Aligned_cols=440 Identities=10% Similarity=0.018 Sum_probs=283.3
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMY 200 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (665)
..|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|+++.|...++.+.+.. +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345666667777777777777777777653 2355677777777777777777777777777665 33556666677777
Q ss_pred hccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC------CeeeHHHHHHHHhhcCChhHHHHH
Q 043580 201 CVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK------DVVSWGTMIDGYLQVERLSEALTM 274 (665)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 274 (665)
...|++++|.+.|+.+. .+.......+..+...+..++|...++.+... ........+..+....+.+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 77777777777775332 22112222233334444445555555554331 112233334444444444444433
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHh-hcc-cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCc
Q 043580 275 YRAMLCDGIAPNDVMIVDLISAC-GRA-MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDH 352 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 352 (665)
+..... ..+....+...+... ... +++..
T Consensus 183 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------------------------- 213 (537)
T 3fp2_A 183 VNTSSN--YDTAYALLSDALQRLYSATDEGYLV----------------------------------------------- 213 (537)
T ss_dssp SCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHH-----------------------------------------------
T ss_pred Hhhccc--cccHHHHHHHHHHHHHHhhhhhhHH-----------------------------------------------
Confidence 322211 122211111111111 100 00000
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC----------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH
Q 043580 353 IASWNALIAGFIRNGMIEDARQLFNNMQKRD----------VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
..|++++|..+++.+.+.+ ..++..+...+...|++++|...++++.+. .|+...+
T Consensus 214 ------------a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 279 (537)
T 3fp2_A 214 ------------ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSY 279 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHH
Confidence 0122333333333333221 113455666777788888888888888874 4556777
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcC
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHG 501 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 501 (665)
..+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|...++++... +.+...+..+...+...|
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 778888888888888888888887764 335667888889999999999999999988876 445678888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhHHHHHhhHhhhc------
Q 043580 502 DANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKHYGCMVDLLGRA------ 571 (665)
Q Consensus 502 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~------ 571 (665)
++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+...-.+ ....+..+..++...
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999999874 55677888999999999999999999999876411111 122344556777777
Q ss_pred ----CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 572 ----GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 572 ----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
|++++|...++++. .+.+...+..+..++...|++++|...+++++++.|+.+....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999986 3446788999999999999999999999999999999877543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3.7e-21 Score=196.58 Aligned_cols=298 Identities=11% Similarity=0.075 Sum_probs=255.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCA 428 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 428 (665)
+...+..+...+.+.|++++|..+|+.+.+ .+...+..+..++...|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 455677888888899999999999987653 367889999999999999999999999999864 4456788889999
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCCh---hHHHHH------------HHHHHhcCCHHHHHHHHHHchhC-CCCcchHHH
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLND---NLSAAI------------IDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNA 492 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 492 (665)
+...|++++|...++.+.+... .+. ..+..+ ...+...|++++|...|+++... +.+...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999987542 222 344434 45589999999999999999887 446778999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHH-------
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCM------- 564 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l------- 564 (665)
+..+|...|++++|..+++++.+.. +.+..++..+...|...|++++|...|+++... .| +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 567889999999999999999999999999854 67 45555555
Q ss_pred -----hhHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 565 -----VDLLGRAGQLEDAEEVIRSMP-MKAD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 565 -----~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
+..+.+.|++++|...++++. ..|+ ...+..++.++.+.|++++|+..+++++++.|+++..+..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 889999999999999999986 3344 44788889999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCC
Q 043580 634 YADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 634 ~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
|...|++++|.+.++++++...
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHHHHHhCc
Confidence 9999999999999999988643
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=2.2e-17 Score=176.73 Aligned_cols=540 Identities=11% Similarity=0.063 Sum_probs=354.3
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChh
Q 043580 27 VSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLN 106 (665)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 106 (665)
..|+.-+-+.+++.....+++.-+..| ..++.++|+|...|..+++-.+. ...-|..-=..++.-||..+++.
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~------fL~~n~~yd~~~vgkyce~rDp~ 915 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER------FLRENPYYDSRVVGKYCEKRDPH 915 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH------HhhccCcccHHHHHHHHHhcCcc
Confidence 345555566667777778888888888 77888999999999877654431 12223333345566778777777
Q ss_pred hHHHhhhcCCCCCcccHHHHHHHHhhcCChHHH-HHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHh
Q 043580 107 DAREVFDKTPIKCCVSYTSMIMGFAQNDCWREA-LEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLM 185 (665)
Q Consensus 107 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (665)
-|.-.+++ ...-.-||....+++-+..- .-++++ -|...|..++. .+-+.-+++.++.....
T Consensus 916 la~iay~~-----g~~d~eli~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~-----~~n~~RR~Lidqv~a~a 978 (1630)
T 1xi4_A 916 LACVAYER-----GQCDLELINVCNENSLFKSLSRYLVRR-------KDPELWGSVLL-----ESNPYRRPLIDQVVQTA 978 (1630)
T ss_pred hHHHHhcc-----cCCcHHHHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhc-----CCcHHHHHHHHHHHHhh
Confidence 77666654 22334455555555554432 222222 14555655542 12233344555544444
Q ss_pred c--CCchhHHHHHHHHHhccCCHHHHHHHHhhccC-CC-----cccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Q 043580 186 I--DGFVIISTNLLNMYCVCSSLVEARSLFDEMKE-RN-----IVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGT 257 (665)
Q Consensus 186 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (665)
+ ..++.-....+++|...|.+.+|+++++.+.- ++ ...-+.++.+..+. +..+..+..++...-+ ...
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~e 1054 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APD 1054 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHH
Confidence 2 22344445667788888888888888887773 22 23445566666555 4455555555554322 444
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 043580 258 MIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGR 337 (665)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 337 (665)
+...+...|.+++|..+|++.. -.......++. ..+++++|.++.+.. .++.++..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 6777778888888888888752 12222233332 566788888777654 346777888888888888
Q ss_pred hHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 043580 338 INLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV 415 (665)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 415 (665)
+++|...|.+. .|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+. .
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 88888888765 6667777888888888888888888876543 23444556888888888777533332 2
Q ss_pred CCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHH
Q 043580 416 KPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIIC 495 (665)
Q Consensus 416 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 495 (665)
.|+...+..+...|...|++++|..+|..+ ..|..+..+|.+.|+++.|.+.+++. .+..+|..+..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCF 1258 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHH
Confidence 456666777888888888888888888875 35778888888888888888888877 34577888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc--C
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA--G 572 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g 572 (665)
+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++... ++.| ....|.-|..+|.+. +
T Consensus 1259 acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHH
Confidence 88888888877775543 34455666778888888888888888887777 5566 566776676666653 4
Q ss_pred ChHHHHHHHHhCC-CC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------CCCCCchHHHHHHH
Q 043580 573 QLEDAEEVIRSMP-MK------ADVVIWGTLLAASRIHGNVEVGERAAKSLAGL------------QPSHGPSRVLLSNI 633 (665)
Q Consensus 573 ~~~~A~~~~~~~~-~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~ 633 (665)
+..++.++|..-. .+ -+...|..+...|.+.|+++.|....-+-... .+.++..++..+..
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 6666666665443 22 24567888888888888888888444333222 45666667766666
Q ss_pred HHhcC
Q 043580 634 YADAG 638 (665)
Q Consensus 634 ~~~~g 638 (665)
|....
T Consensus 1411 yl~~~ 1415 (1630)
T 1xi4_A 1411 YLEFK 1415 (1630)
T ss_pred HHhhC
Confidence 66555
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=3.5e-16 Score=167.63 Aligned_cols=536 Identities=10% Similarity=0.065 Sum_probs=333.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCC-C-----CcchhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhc
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCST-L-----DPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQN 133 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 133 (665)
--...+.+|..+|...+|.++++++.- + +....+.++..-.+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 345677788888888888888888762 2 223455555555554 3344444444443222 44466777788
Q ss_pred CChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHH
Q 043580 134 DCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLF 213 (665)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 213 (665)
|.+++|..+|++... .....+.++. ..+++++|.++.+.. .+..+|..+..++...|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888888888521 1222233322 567788887777754 34677888888888888888888888
Q ss_pred hhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043580 214 DEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIV 291 (665)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 291 (665)
... .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++..... . .|+...+.
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 654 5566777888888888888888888876543 33344455888888888877543332 1 34556666
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHH
Q 043580 292 DLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIED 371 (665)
Q Consensus 292 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (665)
.+...|...|+++.|..+|... ..|..++..+.+.|+++.|.+.+++. .+..+|..+..+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHH
Confidence 7888888888888888888774 47788888888888888888888766 455788888888888888888
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc--cCcHHHHHHHHHHHHHcC
Q 043580 372 ARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS--SGTLKEGRWAHEYVLNNS 449 (665)
Q Consensus 372 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~ 449 (665)
|...... ...++..+..++..|.+.|.+++|+.+++...... +-....|+-+...+++ .++..+..+.|..- .+
T Consensus 1269 A~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--in 1344 (1630)
T 1xi4_A 1269 AQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VN 1344 (1630)
T ss_pred HHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cc
Confidence 8887765 33355667788888999999999999997776533 2223344444444443 34444444444322 22
Q ss_pred CC------CChhHHHHHHHHHHhcCCHHHHHHH-------------HHHchhCCCCcchHHHHHHHHHhcC---------
Q 043580 450 IT------LNDNLSAAIIDMYAKCGSINTAFEV-------------FYHIRDRTTSVSPWNAIICGLAMHG--------- 501 (665)
Q Consensus 450 ~~------~~~~~~~~l~~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~--------- 501 (665)
++ -+...|..++..|.+.|+++.|... |........++..|...+..|...+
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~ 1424 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM 1424 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHH
Confidence 22 2446677888889999999888732 2333333455566666666665555
Q ss_pred ------ChHHHHHHHHHHHHcC----------CCCChHHHHHHHHHhcccChHHHHHHHHHHhHh------hcCCCC-Ch
Q 043580 502 ------DANLTLKIYSDLEKRN----------IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS------VYNVEP-DL 558 (665)
Q Consensus 502 ------~~~~a~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~p-~~ 558 (665)
|++++.+++.+.-... ...+...=..+...+....+++.-..-.+.... ...+.- ..
T Consensus 1425 ~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheL 1504 (1630)
T 1xi4_A 1425 VLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHEL 1504 (1630)
T ss_pred HhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhH
Confidence 6666666655211000 011111111222233333332211111111000 000011 11
Q ss_pred hHHHHHhh-HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 559 KHYGCMVD-LLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 559 ~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.-+..++. +|.+.|+|..|.+++++... |...+.+..++|+.+.+++++.-..+. ++...+......|...
T Consensus 1505 l~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l 1576 (1630)
T 1xi4_A 1505 IEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDL 1576 (1630)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhcc
Confidence 12233443 44455999999999988763 556678888999999998888888776 4555555444455555
Q ss_pred CChhHHHH
Q 043580 638 GRWEDAFS 645 (665)
Q Consensus 638 g~~~~A~~ 645 (665)
=+++-+++
T Consensus 1577 ~~pd~vle 1584 (1630)
T 1xi4_A 1577 LRPDVVLE 1584 (1630)
T ss_pred CCchHHHH
Confidence 55555444
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.9e-19 Score=175.45 Aligned_cols=303 Identities=11% Similarity=0.029 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHh
Q 043580 323 FIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQ 396 (665)
Q Consensus 323 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 396 (665)
..+..+...+...|+++.|...++..+ +.+...+..+...+...|++++|...++...+ .+...+..+...+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 345555666666666666666665432 22344555555666666666666666655432 234455555666666
Q ss_pred CCCchHHHHHHHHHHHCCCCC---C-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 043580 397 NEQPNMALELFHGMVDAGVKP---N-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINT 472 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (665)
.|++++|...|+++.+. .| + ...+..+.... . ...+..+...+...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHH
Confidence 66666666666665553 23 1 11111110000 0 0001112455666666666
Q ss_pred HHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 473 AFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 473 A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
|...++++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666554 3344556666666666666666666666666543 345556666666666666666666666666643
Q ss_pred cCCCC-ChhHHH------------HHhhHhhhcCChHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 043580 552 YNVEP-DLKHYG------------CMVDLLGRAGQLEDAEEVIRSMP-MKAD-V----VIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 552 ~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
.| +...+. .++..+.+.|++++|...++++. ..|+ . ..+..+..++...|++++|...
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 ---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 34 233222 22455666677777777666654 2222 2 2233455666667777777777
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 777777677666666777777777777777777776666543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.8e-18 Score=170.72 Aligned_cols=324 Identities=12% Similarity=0.032 Sum_probs=245.4
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc--CC-chhhHHHHHHH
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI--KD-HIASWNALIAG 362 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~ 362 (665)
|...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+++.|...+++.+ .| +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45667788888999999999999999999875 4567788899999999999999999998754 23 56788999999
Q ss_pred HHhcCCHHHHHHHHhhcCCCCc---c---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHH
Q 043580 363 FIRNGMIEDARQLFNNMQKRDV---Y---SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLK 436 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 436 (665)
+...|++++|...|+...+.++ . .+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998865544 2 2322211000 011223344555566666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
+|...++.+.+.. +.+...+..+..++...|++++|...++++... +.+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 234456667777778888888888888877776 44566777888888888888888888888877
Q ss_pred cCCCCChHHHH------------HHHHHhcccChHHHHHHHHHHhHhhcCCCCC-h----hHHHHHhhHhhhcCChHHHH
Q 043580 516 RNIKLNSITFI------------GVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-L----KHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 516 ~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~ 578 (665)
.. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..++.++...|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 53 33333332 2366688899999999999999865 453 3 33556888999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 579 EVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
..++++. .+.+...|..++.++...|++++|...++++++++|+++..+..|+.++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999986 33478899999999999999999999999999999999998888877765543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-18 Score=169.87 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=199.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHH
Q 043580 350 KDHIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVF 426 (665)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 426 (665)
+.+...+..+...+...|++++|.++|+.+.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566677777777777888888887777643 244566667777777788888888887777643 33455666666
Q ss_pred HHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCcchHHHHHHHHHhcCChH
Q 043580 427 CAIASSG-TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT-TSVSPWNAIICGLAMHGDAN 504 (665)
Q Consensus 427 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 504 (665)
..+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777777777776643 2334566677777777778888877777777653 33556666777777777788
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC-------CCCChhHHHHHhhHhhhcCChHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN-------VEPDLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 577 (665)
+|...+++..+.. +.+...+..+...+...|++++|...++++.+... ...+..++..++.+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8877777777653 44566777777777777777777777777765311 012456777777777777777777
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCh
Q 043580 578 EEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY-ADAGRW 640 (665)
Q Consensus 578 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 640 (665)
...++++. .+.+...|..+..++...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 77777764 2335667777777777777777788777777777777777777777776 444543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.8e-18 Score=168.45 Aligned_cols=267 Identities=12% Similarity=0.032 Sum_probs=230.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 043580 382 RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAII 461 (665)
Q Consensus 382 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (665)
.++..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467788888889999999999999999998764 3445566677788899999999999999998864 34567788889
Q ss_pred HHHHhcC-CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH
Q 043580 462 DMYAKCG-SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 462 ~~~~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 539 (665)
..+...| ++++|...|+++... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 999999999999887 4456789999999999999999999999999874 445677888999999999999
Q ss_pred HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHH
Q 043580 540 LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM-----------KADVVIWGTLLAASRIHGNVE 607 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~ 607 (665)
+|.+.++++. ...| +...+..++.++...|++++|...++++.. +.....+..++.++...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 4467 788899999999999999999999988751 234678899999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 608 VGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+|...+++++++.|+++..+..++.+|...|++++|.+.++++++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999998887654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.2e-18 Score=172.77 Aligned_cols=283 Identities=12% Similarity=-0.044 Sum_probs=221.6
Q ss_pred hcCCHHHHHH-HHhhcCCC-------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHH
Q 043580 365 RNGMIEDARQ-LFNNMQKR-------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLK 436 (665)
Q Consensus 365 ~~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 436 (665)
..|++++|.. .++..... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666666 66644321 34567778888888888888888888888753 345667777788888888888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-chHHH---------------HHHHHHhc
Q 043580 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-SPWNA---------------IICGLAMH 500 (665)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~---------------l~~~~~~~ 500 (665)
+|...++.+.+.. +.+...+..+..+|...|++++|...++++....|+. ..+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888887765 3456777888888888999999999888888764432 22221 23334488
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+. .| +..++..++.+|...|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999864221 5788999999999999999999999999864 67 6889999999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHhcCChhHHHH
Q 043580 579 EVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH-----------GPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
..++++. .+.+...+..++.++.+.|++++|...+++++++.|++ ...+..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999986 34568899999999999999999999999999999888 6789999999999999999999
Q ss_pred HHHHHHh
Q 043580 646 IRKEMRD 652 (665)
Q Consensus 646 ~~~~~~~ 652 (665)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 9875544
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=8.9e-17 Score=154.46 Aligned_cols=398 Identities=12% Similarity=0.115 Sum_probs=178.0
Q ss_pred hcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHH
Q 043580 101 RNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGL 180 (665)
Q Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (665)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445666666666666443 36666777777777777777777542 4666777777777777777777776666
Q ss_pred HHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Q 043580 181 VIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMID 260 (665)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 260 (665)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 6553 3345666777778888888877776665 366678888888888888888888888876 47888888
Q ss_pred HHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 043580 261 GYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINL 340 (665)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 340 (665)
++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 888888888888888887 2678888888888888888888554332 33444556678888999999999
Q ss_pred HHHHHHhccCCc---hhhHHHHHHHHHh--cCCHHHHHHHHhhcCC--------CCcchHHHHHHHHHhCCCchHHHHHH
Q 043580 341 ARLQFELGIKDH---IASWNALIAGFIR--NGMIEDARQLFNNMQK--------RDVYSWSAMISGYAQNEQPNMALELF 407 (665)
Q Consensus 341 a~~~~~~~~~~~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~ 407 (665)
|..+++.++..+ ...|+-|.-.|++ -+++.+.++.|..-.. .+...|..+...|...++++.|..+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t- 304 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT- 304 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH-
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-
Confidence 999998876544 3455656555554 3455666666654321 2677899999999999999988875
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc
Q 043580 408 HGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV 487 (665)
Q Consensus 408 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 487 (665)
|.++ +|+...-..+.....+..+.+--.+.....+.. .+...+.|+.++...=+...+..+|++.... |-+
T Consensus 305 --m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l-~l~ 375 (449)
T 1b89_A 305 --MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQL-PLV 375 (449)
T ss_dssp --HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCT-TTT
T ss_pred --HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHcCCc-HHH
Confidence 4443 344444444444555555544333333333321 2233555666666666666666666555442 222
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHH
Q 043580 488 SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 488 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
..|-.-+ +..+...+-+.+.++.-. .-|..++..-+.+|..-+....|.+
T Consensus 376 ~~yl~~v----~~~n~~~vnealn~l~ie--eed~~~lr~si~~~~nfd~~~l~~~ 425 (449)
T 1b89_A 376 KPYLRSV----QNHNNKSVNESLNNLFIT--EEDYQALRTSIDAYDNFDNISLAQR 425 (449)
T ss_dssp HHHHHHH----HTTCCHHHHHHHHHHHHH--TTCHHHHHHHHHHCCCSCHHHHHHH
T ss_pred HHHHHHH----HHhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHhcCcCHHHHHHH
Confidence 2222111 122333333333333211 3455556666666666665555544
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=4.2e-16 Score=160.28 Aligned_cols=352 Identities=8% Similarity=0.019 Sum_probs=242.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGR----AMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAA----CG 336 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 336 (665)
.+++++|+..|+...+.| +...+..+-..+.. .+++++|...++...+.| +......+...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444555555555444432 22333333333433 445555555555544433 33334444444444 44
Q ss_pred ChHHHHHHHHhccCC-chhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcchHHHHHHHHHh----CCCchHHHHH
Q 043580 337 RINLARLQFELGIKD-HIASWNALIAGFIR----NGMIEDARQLFNNMQK-RDVYSWSAMISGYAQ----NEQPNMALEL 406 (665)
Q Consensus 337 ~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 406 (665)
+++.|...+++.... ++..+..+...|.. .+++++|.+.|+...+ .++..+..+...|.. .+++++|+.+
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 555555555443322 33445555555555 5667777777766543 356677777777776 7888888888
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHH
Q 043580 407 FHGMVDAGVKPNEITMVSVFCAIAS----SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CGSINTAFEVFY 478 (665)
Q Consensus 407 ~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 478 (665)
|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88887754 44556666666654 678888888888887654 34455566667766 889999999999
Q ss_pred HchhCCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC---hHHHHHHHHHHhHh
Q 043580 479 HIRDRTTSVSPWNAIICGLAMH-----GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG---LVDLGERYFKSMKS 550 (665)
Q Consensus 479 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 550 (665)
+..+. .++..+..+...|... +++++|+.++++..+.| +...+..+...|...| ++++|.++|++..+
T Consensus 284 ~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 284 KSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88765 4566777788888877 89999999999999865 4456677777776655 88999999999886
Q ss_pred hcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCC
Q 043580 551 VYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 551 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 622 (665)
. .++..+..|..+|.. .+++++|.+.+++.....++..+..+...|.. .++.++|...++++.+..|+
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 4 467788889999988 89999999999998766678889999999988 89999999999999999854
Q ss_pred ---CCchHHHHHHHHHh
Q 043580 623 ---HGPSRVLLSNIYAD 636 (665)
Q Consensus 623 ---~~~~~~~l~~~~~~ 636 (665)
++.....|+.++..
T Consensus 436 ~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTSCHH
T ss_pred CcCCHHHHHHHHhcCHh
Confidence 67767777766554
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=8.2e-16 Score=158.15 Aligned_cols=363 Identities=11% Similarity=0.017 Sum_probs=300.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHH
Q 043580 271 ALTMYRAMLCDGIAPNDVMIVDLISACGR----AMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAA----CGRINLAR 342 (665)
Q Consensus 271 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 342 (665)
++..++...+.| +...+..+-..+.. .++++.|...++...+.| +...+..+...|.. .++.+.|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455555555543 55666666666666 789999999999998875 56778888899998 89999999
Q ss_pred HHHHhccCC-chhhHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHHHH
Q 043580 343 LQFELGIKD-HIASWNALIAGFIR----NGMIEDARQLFNNMQKR-DVYSWSAMISGYAQ----NEQPNMALELFHGMVD 412 (665)
Q Consensus 343 ~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 412 (665)
..+++.... ++..+..|...|.. .+++++|...|+...+. ++..+..+...|.. .+++++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999876543 56677788888888 88999999999987654 67788888888887 7899999999999998
Q ss_pred CCCCCChhHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHchhCC
Q 043580 413 AGVKPNEITMVSVFCAIAS----SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CGSINTAFEVFYHIRDRT 484 (665)
Q Consensus 413 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 484 (665)
.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|++....
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 252 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ- 252 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 75 56677777777777 899999999999998875 45566777778876 88999999999998875
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc-----ChHHHHHHHHHHhHhhcCCC
Q 043580 485 TSVSPWNAIICGLAM----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA-----GLVDLGERYFKSMKSVYNVE 555 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~ 555 (665)
.+...+..+...|.. .+++++|++++++..+.| +...+..+...|... +++++|..+|++..+.
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---- 325 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---- 325 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----
Confidence 456677778888877 899999999999998865 455667777777776 8999999999999864
Q ss_pred CChhHHHHHhhHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 556 PDLKHYGCMVDLLGRAG---QLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 556 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
-+...+..+..+|...| ++++|++.+++.....++..+..+...|.. .+++++|...++++.+.. ++..+.
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 25567888888888766 889999999998766788999999999998 899999999999998864 578899
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043580 629 LLSNIYAD----AGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 629 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 655 (665)
.|+.+|.. .+++++|.+.|+++.+.|.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999998 8999999999999998774
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.2e-17 Score=162.47 Aligned_cols=263 Identities=8% Similarity=-0.095 Sum_probs=206.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455566666777777777777777776643 2345566666677777777777777777776653 3345666777778
Q ss_pred HHhcCCHHHHHHHHHHchhCCCC-cchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 043580 464 YAKCGSINTAFEVFYHIRDRTTS-VSPWNAI--------------IC-GLAMHGDANLTLKIYSDLEKRNIKLNSITFIG 527 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 527 (665)
+...|++++|...++++....|+ ...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 88888888888888887776333 3333333 22 3677889999999999999875 557788999
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 604 (665)
+...+...|++++|.+.++++.+. .| +..++..++.++...|++++|...++++. .+.+...+..+..++...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 56 68889999999999999999999999975 3346888999999999999
Q ss_pred CHHHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 605 NVEVGERAAKSLAGLQPS------------HGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++++|...++++++..|+ .+..+..++.+|...|++++|.++++++++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999 678899999999999999999999876544
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=8.5e-18 Score=166.23 Aligned_cols=261 Identities=11% Similarity=-0.045 Sum_probs=203.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456777777777777777777777777653 3355667777777777778888887777777654 334567777888
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCC-c----------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHHHHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTS-V----------SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL--NSITFIGVL 529 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 529 (665)
+|...|++++|...++++....|+ . ..+..+...+...|++++|...++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 888888888888888887765332 1 223345788889999999999999999874 22 678899999
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNV 606 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 606 (665)
..+...|++++|...|+++.+. .| +..++..++.+|...|++++|+..++++. .+.+...|..++.+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999864 66 78899999999999999999999999986 334688999999999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 607 EVGERAAKSLAGLQPS------------HGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
++|...+++++++.|+ ....+..|+.++...|+.+.|.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998887 356789999999999999999888765
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.3e-15 Score=158.44 Aligned_cols=408 Identities=11% Similarity=0.045 Sum_probs=276.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043580 220 NIVSWNVMLNGFAKAGLVELARELFERIPS--K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISA 296 (665)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (665)
+...|..++. +.+.|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|+++... .|+...+...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5567888887 4778999999999998875 4 4557888889999999999999999999874 4777766666643
Q ss_pred h-hcccchhhHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHHhccC-Cch---hhH
Q 043580 297 C-GRAMAFGEGLQ----IHSIIVKA-GFDC-YDFIQATIIHFYAA---------CGRINLARLQFELGIK-DHI---ASW 356 (665)
Q Consensus 297 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 356 (665)
. ...|+.+.|.+ +|+..... |..+ +..++...+....+ .|+++.|..+|++.+. |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34567777665 66655543 4433 44566666665554 5677788888876554 221 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH------HCC---CCCCh--------
Q 043580 357 NALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMV------DAG---VKPNE-------- 419 (665)
Q Consensus 357 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~-------- 419 (665)
..........|. ..+..++. .+.+++..|..+++.+. +.. ++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 222111100110 01111111 01234555555555422 111 23331
Q ss_pred hHHHHHHHHHHc----cCcH----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 043580 420 ITMVSVFCAIAS----SGTL----KEGRWAHEYVLNNSITLNDNLSAAIIDMYAK-------CGSIN-------TAFEVF 477 (665)
Q Consensus 420 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~ 477 (665)
..+...+..... .++. +.+..+++.++... +.++..+..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 222222221111 1222 36667788877653 3456677777777765 68877 899999
Q ss_pred HHchh-C-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 478 YHIRD-R-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 478 ~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
++... . +.+...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|.++|++..+
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--- 384 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--- 384 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 99986 4 445778999999999999999999999999985 5542 4788888888889999999999999985
Q ss_pred CCC-ChhHHHHHhhH-hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc----
Q 043580 554 VEP-DLKHYGCMVDL-LGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP---- 625 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 625 (665)
..| +...|...+.. +...|+.++|..+|++.. ..| ++..|..++..+.+.|+.++|..++++++...|.++.
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 345 34444433333 336899999999999876 234 6888999999999999999999999999998877665
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.+...+......|+.+.+.++.+++++.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 57677778888899999999999987743
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.5e-16 Score=163.28 Aligned_cols=370 Identities=10% Similarity=-0.069 Sum_probs=204.6
Q ss_pred CeeeHHHHHHHHhhcCChhHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCC----
Q 043580 251 DVVSWGTMIDGYLQVERLSEALTMYRAMLCD-----G--IAP-NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGF---- 318 (665)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 318 (665)
.+..||.|...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...+++..+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888888999998888876531 1 122 345677777777777777777777766654210
Q ss_pred ---CCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHH
Q 043580 319 ---DCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--R-DVYSWSAMIS 392 (665)
Q Consensus 319 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 392 (665)
.....++.....++...| .+++++|...|++..+ | ++..+..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~-----------------------------~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCG-----------------------------GNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHC-----------------------------TTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHc-----------------------------cccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 011222222222222221 2234555555544331 1 3333333333
Q ss_pred H---HHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH----ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 043580 393 G---YAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA----SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYA 465 (665)
Q Consensus 393 ~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (665)
+ +...++.++|++.+++..+.. +.+...+..+...+. ..++.++|.+.++...... +.+..++..+...|.
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence 2 233455566666666665532 222333333333332 2345556666666665543 233445556666677
Q ss_pred hcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCChHHH
Q 043580 466 KCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAM-------------------HGDANLTLKIYSDLEKRNIKLNSITF 525 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~p~~~~~ 525 (665)
..|++++|...+++.....|+ ..++..+..+|.. .+..+.|...+++..+.. +.+...+
T Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 777777777777666655333 3344444444322 223567778888877764 4456678
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCCChh----HHHHHhhH-hhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLK----HYGCMVDL-LGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAA 599 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~ 599 (665)
..+...+...|++++|+..|++..+. .|+.. .+..+... +...|++++|+..+++.. ..|+...+.
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----- 409 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----- 409 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-----
Confidence 88888899999999999999988854 34322 23333332 346788999999888865 455433322
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCcccc
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 664 (665)
+....+..+++++++.+|+++.++..||.+|...|++++|++.|+++++.|...+...+|+
T Consensus 410 ----~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 ----KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234566778888899999999999999999999999999999999999998888888875
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.4e-16 Score=148.98 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=180.8
Q ss_pred hcCCHHHHHHHHhhcCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHH
Q 043580 365 RNGMIEDARQLFNNMQKRDV----YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRW 440 (665)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 440 (665)
..|++..|+..++.....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34444444444444333221 1223344555555555555544432 123344455555555555555555655
Q ss_pred HHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 043580 441 AHEYVLNNSITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK 519 (665)
Q Consensus 441 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 519 (665)
.++.+...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.++++.+. .
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 555555544333 334455566778888888888888877 366778888888999999999999999999886 3
Q ss_pred CChHHH---HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHH
Q 043580 520 LNSITF---IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIW 593 (665)
Q Consensus 520 p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 593 (665)
|+.... ...+..+...|++++|..+|+++.+. .| ++..++.++.++.+.|++++|...++++. .+.++.++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 554311 12334444568999999999999975 56 78899999999999999999999999976 33478899
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 594 GTLLAASRIHGNVEV-GERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
..++..+...|+.++ +..+++++++++|+++.+.. ...+.+.+++|..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999865 67899999999999887543 455566666665544
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.3e-17 Score=162.28 Aligned_cols=275 Identities=13% Similarity=0.055 Sum_probs=206.6
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHH-HHHHHHHCCC-CC--ChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 368 MIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALE-LFHGMVDAGV-KP--NEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
.++.+...|+.+...++. ++...|++++|+. .+++...... .| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443332 3345588999998 8876654321 11 34567788899999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.+.+.. +.+...+..+..++...|++++|...|+++... +.+..++..+...+...|++++|...++++.... +.+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 166 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYA 166 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTG
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 999864 445678888999999999999999999999887 4467789999999999999999999999999864 2233
Q ss_pred HHHHH---------------HHHHhcccChHHHHHHHHHHhHhhcCCCC---ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 523 ITFIG---------------VLSTCCHAGLVDLGERYFKSMKSVYNVEP---DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 523 ~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
..+.. .+..+...|++++|...++++.+. .| +..++..++.+|...|++++|...++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33221 233344889999999999999865 44 4788999999999999999999999998
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 585 P--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 585 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
. .+.+...|..++.++...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++++..
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6 334688999999999999999999999999999999999999999999999999999999999998753
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=6.1e-17 Score=160.06 Aligned_cols=234 Identities=11% Similarity=-0.012 Sum_probs=197.4
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHH
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICG 496 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 496 (665)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++... +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34558888899999999999999999998875 345788899999999999999999999999887 4457789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-----------hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLN-----------SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMV 565 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 565 (665)
|...|++++|...++++.+.. |+ ...+..+...+...|++++|..+++++.+...-.++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998853 32 12233457889999999999999999997611112588999999
Q ss_pred hHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
.+|...|++++|++.++++. .+.+..+|..++.++...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999986 3457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 043580 644 FSIRKEMRDCG 654 (665)
Q Consensus 644 ~~~~~~~~~~~ 654 (665)
.+.++++++..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998754
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=6.3e-15 Score=153.18 Aligned_cols=412 Identities=11% Similarity=0.038 Sum_probs=277.5
Q ss_pred CCchhHHHHHHHHHhccCCHHHHHHHHhhccC--C-CcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHH
Q 043580 187 DGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--R-NIVSWNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDG 261 (665)
Q Consensus 187 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 261 (665)
+.+...|..++. +.+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|+++.. |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 335566666776 3667788888888887775 3 334677777888888888888888888765 566666666643
Q ss_pred H-hhcCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHhCCCCchhHH
Q 043580 262 Y-LQVERLSEALT----MYRAMLCD-GIAP-NDVMIVDLISACGR---------AMAFGEGLQIHSIIVKAGFDCYDFIQ 325 (665)
Q Consensus 262 ~-~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 325 (665)
. ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..++.........+
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34677777665 77766543 5555 45566666665443 68899999999999883111112233
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhh-------cC------CCC--------c
Q 043580 326 ATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNN-------MQ------KRD--------V 384 (665)
Q Consensus 326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~--------~ 384 (665)
..........|. ..+..++. .+.+++..|..++.. +. .++ .
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 322222111111 11111111 012334444443332 11 111 1
Q ss_pred chHHHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCChhHHHHHHHHHHc-------cCcHH-------HHHHHH
Q 043580 385 YSWSAMISGYAQN----EQP----NMALELFHGMVDAGVKPNEITMVSVFCAIAS-------SGTLK-------EGRWAH 442 (665)
Q Consensus 385 ~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~ 442 (665)
..|...+...... ++. ..+..+|++..... +-+...|......+.. .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 2444444332222 232 36778898888752 3345566666666654 68876 888999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 443 EYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV--SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
+...+.-.+.+...+..++..+.+.|++++|..+|+++....|+. ..|..++..+.+.|+.++|..+|++..+.. +.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~ 388 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT 388 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 888763334457788889999999999999999999999886653 478888888999999999999999999853 22
Q ss_pred ChHHHHHHHHH-hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CC--CHHH
Q 043580 521 NSITFIGVLST-CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KA--DVVI 592 (665)
Q Consensus 521 ~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~ 592 (665)
+...+...+.. +...|+.++|..+|++..+. .| ++..|..++..+.+.|+.++|..+|+++.. .| ....
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 34444333322 33589999999999999865 57 688999999999999999999999999862 22 2448
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
|...+......|+.+.+..+.+++.+..|+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 888888888999999999999999999885
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=4.6e-16 Score=149.58 Aligned_cols=376 Identities=10% Similarity=0.062 Sum_probs=144.1
Q ss_pred ccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHC
Q 043580 202 VCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCD 281 (665)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 281 (665)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4566666777776664443 6666777777777777777766543 44456666666676777777777755555442
Q ss_pred CCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHH
Q 043580 282 GIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIA 361 (665)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 361 (665)
.+++.+.+.++.+|.+.|+++++.++++ .|+...+..+...|...|.++.|...|... ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3445566666667777777666666553 244456666667777777777777666644 46777777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHH
Q 043580 362 GFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWA 441 (665)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 441 (665)
++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.++++..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777766 3666777777777777777777544332 222223344566677777777777777
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHHHchhCC------CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 442 HEYVLNNSITLNDNLSAAIIDMYAKC--GSINTAFEVFYHIRDRT------TSVSPWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
++...... +-...+|+.+.-+|++- +++.+..+.|..-...+ .+...|..+.-.|...++++.|..+ |
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---M 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---H
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---H
Confidence 77665443 33445566555555543 23333444443222222 2455688888888888888877763 4
Q ss_pred HHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--------
Q 043580 514 EKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------- 585 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 585 (665)
.++ +|+......+.....+..+.+--.+...-.... .| ...+-|..++...=+...+.+++++..
T Consensus 306 ~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~y 378 (449)
T 1b89_A 306 MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY 378 (449)
T ss_dssp HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHH
Confidence 442 333222223333333333333222222222211 33 235555555555556666666665553
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 586 -----MKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 586 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
...+...=.++-..|....|++.-....
T Consensus 379 l~~v~~~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 379 LRSVQNHNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2223333334444556666665444433
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=6.5e-17 Score=152.88 Aligned_cols=249 Identities=10% Similarity=0.036 Sum_probs=204.4
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 043580 392 SGYAQNEQPNMALELFHGMVDAGVKPNE--ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGS 469 (665)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (665)
......|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 445668999999999887644 34443 3445677899999999999876644 234566788889999999999
Q ss_pred HHHHHHHHHHchhC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHH
Q 043580 470 INTAFEVFYHIRDR--TT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 470 ~~~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
.++|.+.++++... .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998764 24 455677788999999999999999987 5677889999999999999999999999
Q ss_pred HhHhhcCCCCChhHH---HHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 547 SMKSVYNVEPDLKHY---GCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 547 ~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
++.+. .|+.... ..++..+...|++++|..+++++. .+.++..|+.++.++.+.|++++|+..++++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99965 5753221 223344555699999999999986 456889999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhH-HHHHHHHHHhCCC
Q 043580 622 SHGPSRVLLSNIYADAGRWED-AFSIRKEMRDCGM 655 (665)
Q Consensus 622 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 655 (665)
+++.++..++.++...|+.++ +.++++++++...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999976 5789999877543
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.3e-16 Score=144.00 Aligned_cols=196 Identities=12% Similarity=0.013 Sum_probs=161.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 043580 451 TLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVL 529 (665)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 529 (665)
+++...+..+...+.+.|++++|...|++.... +.+...+..+...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455667778888899999999999999998887 4556788889999999999999999999999864 44677888899
Q ss_pred HHhccc-----------ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 043580 530 STCCHA-----------GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGT 595 (665)
Q Consensus 530 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 595 (665)
..+... |++++|+..+++..+. .| +...+..+..+|...|++++|+..++++. . .++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 999999 9999999999999954 78 78899999999999999999999999975 5 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
+..++...|++++|+..++++++++|+++..+..++.++...|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998764
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.3e-16 Score=143.61 Aligned_cols=219 Identities=9% Similarity=-0.038 Sum_probs=162.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC----C----cchHHHH
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT----S----VSPWNAI 493 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~----~~~~~~l 493 (665)
+..+...+...|++++|...++.+.+.. .+...+..+..++...|++++|...+++.....| + ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444555555555555554444 4444555556666666666666666666554411 1 3567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...+...|++++|...+++.... .|+. ..+...|++++|...++++.. ..| +...+..++.++...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 77888888888888888888774 4543 345566888999999998874 466 6778888999999999
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 573 QLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 573 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
++++|...++++. .+.+...|..++.++...|++++|+..++++++..|+++..+..++.+|...|++++|.+.++++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998875 34467888899999999999999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 043580 651 RDCG 654 (665)
Q Consensus 651 ~~~~ 654 (665)
++..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7754
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=8.6e-15 Score=150.20 Aligned_cols=380 Identities=9% Similarity=-0.014 Sum_probs=229.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHhhCCC-----------C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHC-----C-
Q 043580 221 IVSWNVMLNGFAKAGLVELARELFERIPS-----------K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCD-----G- 282 (665)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g- 282 (665)
...|+.+...+...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+- +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45789999999999999999999987532 2 3568999999999999999999999987642 1
Q ss_pred CCC-CHHHHHHHHHHhh--cccchhhHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCChHHHHHHHHhcc--CC-ch
Q 043580 283 IAP-NDVMIVDLISACG--RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHF---YAACGRINLARLQFELGI--KD-HI 353 (665)
Q Consensus 283 ~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~--~~-~~ 353 (665)
..+ ...++.....++. ..+++++|...|+...+.. +.++..+..+..+ +...++.+.|.+.+++.+ .| +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 111 3455555544444 3467999999999999875 3344444444444 345577777877776543 23 34
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHH
Q 043580 354 ASWNALIAGFIR----NGMIEDARQLFNNMQ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSV 425 (665)
Q Consensus 354 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 425 (665)
..+..+...+.. .|++++|.+.++... ..+..++..+...|...|++++|+..+++..+. .|+ ...+..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 455555444443 456777888887654 335667778888888888888888888888774 344 3344444
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChH
Q 043580 426 FCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDAN 504 (665)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 504 (665)
..++...+.... ... . ..........+.++.|...+++.... +.+..++..+...+...|+++
T Consensus 288 g~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 333322111000 000 0 00011111223467788888887776 455778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChH--HHHHHHH-HhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSI--TFIGVLS-TCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
+|+..|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+....... ...+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHHHHH
Confidence 9999999999865333221 2233322 2346799999999999988 457754332222 23334444
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 582 RSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 582 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
++.. .+.++.+|..++.++...|++++|+..|++++++.|..|.+...+|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4433 3346789999999999999999999999999999999988766655
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=3.1e-15 Score=145.26 Aligned_cols=232 Identities=11% Similarity=0.005 Sum_probs=197.9
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHH
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGL 497 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 497 (665)
...+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++++... +.+...+..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3456677788899999999999999998865 346677888999999999999999999999887 44567889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHH--------------HH-HhcccChHHHHHHHHHHhHhhcCCCC-ChhHH
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLNSITFIGV--------------LS-TCCHAGLVDLGERYFKSMKSVYNVEP-DLKHY 561 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 561 (665)
...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+. .| +..++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 175 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM---NPNDAQLH 175 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH---STTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh---CCCCHHHH
Confidence 99999999999999999863 2233333333 33 478899999999999999865 56 78899
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
..++.+|...|++++|...++++. .+.+...|..++..+...|++++|...++++++..|+++..+..++.+|...|+
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986 334688899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 043580 640 WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 640 ~~~A~~~~~~~~~~~~ 655 (665)
+++|.+.++++++...
T Consensus 256 ~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999987543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.5e-15 Score=140.36 Aligned_cols=235 Identities=11% Similarity=-0.024 Sum_probs=191.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CC----hhHHH
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT--LN----DNLSA 458 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 458 (665)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356667777788888888888888887766 66777777888888888888888888887653321 12 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLV 538 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 538 (665)
.+...+...|++++|...|++.....|+ ...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 8888999999999999999998886555 245666788999999999998853 33566788899999999999
Q ss_pred HHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 539 DLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 539 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
++|...++++.+. .| +..++..++.+|...|++++|...++++. .+.+...|..+..++...|++++|...+++
T Consensus 156 ~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999864 56 78889999999999999999999999886 344688899999999999999999999999
Q ss_pred HhccC------CCCCchHHHHHH
Q 043580 616 LAGLQ------PSHGPSRVLLSN 632 (665)
Q Consensus 616 ~~~~~------p~~~~~~~~l~~ 632 (665)
++++. |++...+..|..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99998 777766666554
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=6.8e-15 Score=138.64 Aligned_cols=248 Identities=10% Similarity=-0.013 Sum_probs=170.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--hhHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLN--DNLSAAIIDM 463 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 463 (665)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445566666777777777777766642 22333555666666677777777777776665321111 1236677777
Q ss_pred HHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 464 YAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
+...|++++|...|++.... +.+..++..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877776 3455678888888888888888888888887752 345566666663444455888899
Q ss_pred HHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHhcCCHHH
Q 043580 543 RYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMP----MKAD------VVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 543 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~ 608 (665)
+.|+++.+. .| +...+..+..++...|+ +++|...++++. ..|+ ...|..+...+...|++++
T Consensus 163 ~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 888888854 66 57777778888888787 777888777764 2233 2567778888899999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 609 GERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
|...++++++++|+++.++..++.+....+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999988887776655543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=3.5e-14 Score=143.48 Aligned_cols=342 Identities=10% Similarity=0.024 Sum_probs=184.3
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHHhccCCchhhHHHHHHHHHhcC-----
Q 043580 296 ACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI---NLARLQFELGIKDHIASWNALIAGFIRNG----- 367 (665)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 367 (665)
.+.+.|++++|.+.++...+.|. ...+..+...|...|+. ++|...|++....++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 33444555555555555555442 12222333334444554 56666666555445555555555444443
Q ss_pred CHHHHHHHHhhcCCC-CcchHHHHHHHHHhCCCch---HHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 368 MIEDARQLFNNMQKR-DVYSWSAMISGYAQNEQPN---MALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 368 ~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
++++|...|+...++ ++..+..+...|...+..+ .+.+.+......|. ......+...+...+.++.+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 556677766665433 4556666666666654433 34444554444442 2334444555555554444333333
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHchhCCCC-cchHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCG---SINTAFEVFYHIRDRTTS-VSPWNAIICGLAMH----GDANLTLKIYSDLEK 515 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~ 515 (665)
.+.+.-...++..+..+..+|...| +.++|.+.|++.....+. ...+..+...|... +++++|+.+|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 3332222233336666777777777 777777777777665333 23335555555443 57777777777776
Q ss_pred cCCCCChHHHHHHHHH-h--cccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC-----ChHHHHHHHHhCCCC
Q 043580 516 RNIKLNSITFIGVLST-C--CHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG-----QLEDAEEVIRSMPMK 587 (665)
Q Consensus 516 ~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 587 (665)
.| +...+..+... + ...+++++|.++|++..+. | ++..+..|..+|. .| ++++|...|++.. .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 33444444444 2 3467777888877777654 3 5666666776666 44 7778888887777 5
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043580 588 ADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD----AGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 655 (665)
.++..+..|...|.. ..|+++|...++++.+ +.++.....|+.+|.. ..++++|...|+++.+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 567777777766655 3377788888877765 3456667777777764 4577777777777776664
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.1e-14 Score=135.46 Aligned_cols=243 Identities=9% Similarity=-0.080 Sum_probs=189.1
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 043580 396 QNEQPNMALELFHGMVDAGVK---PNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINT 472 (665)
Q Consensus 396 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (665)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888888775321 134566777788888888888888888887764 3356778888999999999999
Q ss_pred HHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 473 AFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 473 A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
|...|+++... +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999998886 445778999999999999999999999999985 455555555555667779999999999888764
Q ss_pred cCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 552 YNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-AD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
..++...+ .++..+...++.++|...++++... |. ...+..++.++...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 22344444 4777788888899999999887633 32 578889999999999999999999999999998765
Q ss_pred hHHHHHHHHHhcCChhHHHHHH
Q 043580 626 SRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 66788999999998887
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.9e-14 Score=133.73 Aligned_cols=200 Identities=8% Similarity=-0.065 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...|+++... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 345667778888889999999888888776 3456678888888999999999999999988864 44677888888899
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|.++++++.+. +..| +...+..++.+|...|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998852 3567 57788888999999999999999998875 334678888899999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...++++++..|++...+..++.++...|++++|.++++++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999998899999999999999999999999987654
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3e-14 Score=134.18 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=193.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc----hHHHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS----PWNAIICG 496 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~ 496 (665)
.+......+...|++++|...++.+.+... .+...+..+..+|...|++++|...+++....+++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 455667788899999999999999988642 3445778888999999999999999999988643433 38889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 575 (665)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++.. ...| +...+..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 4567899999999999999999999999998 4577 7888888883444556999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccC---CCCC-----chHHHHHHHHHhcCChhH
Q 043580 576 DAEEVIRSMP--MKADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQ---PSHG-----PSRVLLSNIYADAGRWED 642 (665)
Q Consensus 576 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~~-----~~~~~l~~~~~~~g~~~~ 642 (665)
+|.+.++++. .+.+...+..+..++...|+ +++|...+++++++. |+.. ..+..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999986 33457888888999988888 888999999998776 4422 468889999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 043580 643 AFSIRKEMRDCGMK 656 (665)
Q Consensus 643 A~~~~~~~~~~~~~ 656 (665)
|.+.++++++....
T Consensus 240 A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 240 ADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999886543
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.2e-13 Score=129.97 Aligned_cols=219 Identities=11% Similarity=-0.033 Sum_probs=157.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCCcchHHHHHHHHHh
Q 043580 424 SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CGSINTAFEVFYHIRDRTTSVSPWNAIICGLAM 499 (665)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (665)
.+...+...|++++|...++...+. .+...+..+...|.. .+++++|...|++.... .+...+..+...|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhC
Confidence 3333444444444444444444441 122334445555666 66777777777666664 255666677777777
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc----cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh-
Q 043580 500 ----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH----AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR- 570 (665)
Q Consensus 500 ----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 570 (665)
.+++++|+..+++..+.+ +...+..+...|.. .+++++|.++|++..+. + +...+..+..+|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAG 159 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcC
Confidence 788888888888877754 56677777777777 88888888888888764 3 55667777788877
Q ss_pred ---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCC
Q 043580 571 ---AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD----AGR 639 (665)
Q Consensus 571 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 639 (665)
.+++++|...+++.....++..+..+...+.. .+++++|+..++++.+..| +..+..|+.+|.. .++
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC
Confidence 88888888888887654567778888888888 8899999999999988766 6678888999988 899
Q ss_pred hhHHHHHHHHHHhCCC
Q 043580 640 WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 640 ~~~A~~~~~~~~~~~~ 655 (665)
+++|.+.++++.+.|.
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999888764
No 44
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=165.06 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=110.7
Q ss_pred chhhHHHHHHHhcCChhhHHHhhhcCC-------CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHH
Q 043580 90 VACNIMISGYIRNDRLNDAREVFDKTP-------IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVI 162 (665)
Q Consensus 90 ~~~~~ll~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 162 (665)
.+||+||.+||+.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999997653 6899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHH
Q 043580 163 SSSVHLGGI-WECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSL 212 (665)
Q Consensus 163 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 212 (665)
.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999985 78999999999999999999999998877665444444444
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=9.9e-15 Score=134.87 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...|+++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344555666777777777777777777665 3345667777777777888888888888777753 44566777777777
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|.+.++++.+. .| +...+..++.++...|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 7888888888888887754 44 56777777788888888888888887765 334567777777788888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+..++++++..|+++..+..++.+|...|++++|.+.++++++...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888888888877788888888888888888888888776543
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=2.6e-14 Score=130.18 Aligned_cols=199 Identities=10% Similarity=-0.024 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...++++... +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 345666777788888888888888877765 3345677778888888888888888888888764 44667788888888
Q ss_pred ccc-ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 043580 533 CHA-GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 533 ~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 608 (665)
... |++++|...++++.+. +..| +...+..++.++...|++++|...++++. .+.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 8888888888888762 3455 46778888888888888888888888875 33357788888888888999999
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 609 GERAAKSLAGLQP-SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 609 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999988888 888888888888888889998888888887643
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=5.4e-14 Score=123.46 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=142.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 043580 485 TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGC 563 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 563 (665)
.+...|..+...+...|++++|++.|++.++.. +-+...+..+..++.+.|++++|...++..... .| +...+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 455678888888888888888888888888864 446778888888999999999999999988854 56 6777888
Q ss_pred HhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+...+...++++.|...+++.. .+.+...+..+..++...|++++|+..++++++++|+++..+..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999988875 33467888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 043580 642 DAFSIRKEMRDCGM 655 (665)
Q Consensus 642 ~A~~~~~~~~~~~~ 655 (665)
+|++.|+++++...
T Consensus 159 ~A~~~~~~al~~~p 172 (184)
T 3vtx_A 159 EAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999988654
No 48
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=157.69 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
..+|+++|++|++.|++++|.++|..|.+. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345666677777777777777776655421 567777777777777777777777777777777777777777777
Q ss_pred HHHhcccCh-HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc
Q 043580 529 LSTCCHAGL-VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA 571 (665)
Q Consensus 529 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 571 (665)
|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH
Confidence 777777776 46677777777776 7777777777776655443
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=7.8e-13 Score=133.59 Aligned_cols=377 Identities=10% Similarity=0.024 Sum_probs=189.7
Q ss_pred HHHhccCCHHHHHHHHhhccC-CCcccHHHHHHHHHhcCCH---HHHHHHHhhCCCCCeeeHHHHHHHHhhcC-----Ch
Q 043580 198 NMYCVCSSLVEARSLFDEMKE-RNIVSWNVMLNGFAKAGLV---ELARELFERIPSKDVVSWGTMIDGYLQVE-----RL 268 (665)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 268 (665)
..+.+.|++++|.+.|+...+ .+...+..+...|...|+. ++|...|++..+.+...+..|...+...+ ++
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 344445555555555555443 2222333333333444444 55666665555445555666655444443 56
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccch---hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 043580 269 SEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAF---GEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQF 345 (665)
Q Consensus 269 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 345 (665)
++|+..|++..+.|... .+..+...+...+.. ..+.+.+......|. +.....+...|...+.++.
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~----- 159 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ----- 159 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG-----
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc-----
Confidence 67777777776655332 233333333332222 223333333333221 2222222233333222222
Q ss_pred HhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCChhHH
Q 043580 346 ELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNE---QPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
..+.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+
T Consensus 160 ----------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 160 ----------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp ----------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred ----------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 2233444555555556666666777776666 6667777776666655 2232222
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHH-H--Hh
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICG-L--AM 499 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~--~~ 499 (665)
..+...|... ....+++++|...|++.. +.++..+..+... + ..
T Consensus 217 ~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 217 DSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPE 263 (452)
T ss_dssp HHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGG
T ss_pred HHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCC
Confidence 2222222221 011146666666666665 3455555555555 3 35
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC-----hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG-----LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR---- 570 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 570 (665)
.+++++|+++|++..+.| +...+..+...|. .| ++++|.++|++.. .-++..+..|..+|..
T Consensus 264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCC
Confidence 677777777777777765 4555555665555 44 7888888887764 1256677777777765
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCChhHHH
Q 043580 571 AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA--DAGRWEDAF 644 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~ 644 (665)
..++++|...+++.....++.....|...|.. ..|.++|...++++.+..+. .....+..+.. ..++..+|.
T Consensus 335 ~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~ 412 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQ 412 (452)
T ss_dssp SCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHH
Confidence 34788888888877655556666667766653 45788888888888776543 33344444432 234667777
Q ss_pred HHHHHHHh
Q 043580 645 SIRKEMRD 652 (665)
Q Consensus 645 ~~~~~~~~ 652 (665)
++.++.+.
T Consensus 413 ~~~~~~~~ 420 (452)
T 3e4b_A 413 RLVQQELA 420 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=2.7e-14 Score=139.38 Aligned_cols=212 Identities=12% Similarity=0.072 Sum_probs=105.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHccCc-HHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIASSGT-LKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
..|..+...+...|++++|+..++++.+. .|+ ...|..+..++...|+ +++|...++.+++..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------------
Confidence 45666777777777777777777777763 333 3344444444555553 555555555554433
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
+.+...|..+..++...|++++|+..++++++.. +-+...|..+..++...|++++|+
T Consensus 163 ---------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 163 ---------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHH
Confidence 2233344444444444455555555555554432 224444444444555555555555
Q ss_pred HHHHHhHhhcCCCC-ChhHHHHHhhHhhh-cCChHHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHH
Q 043580 543 RYFKSMKSVYNVEP-DLKHYGCMVDLLGR-AGQLEDA-----EEVIRSMP-MKA-DVVIWGTLLAASRIHG--NVEVGER 611 (665)
Q Consensus 543 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~-~~~-~~~~~~~l~~~~~~~g--~~~~A~~ 611 (665)
..++++.+. .| +...|+.+..+|.. .|..++| +..++++. ..| +...|..+...+...| ++++|+.
T Consensus 221 ~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 221 QYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 555555432 44 44445555555444 3333444 23344432 122 3444444444444444 3455555
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.++++ +.+|+++.++..|+.+|.+.
T Consensus 298 ~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 298 QLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 55544 44555555555555555444
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.2e-13 Score=134.79 Aligned_cols=244 Identities=9% Similarity=0.064 Sum_probs=182.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 043580 353 IASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQ-PNMALELFHGMVDAGVKPN-EITMVSVFC 427 (665)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 427 (665)
...|..+...+...|++++|+..++.... .+..+|+.+..++...|+ +++|+..|+++.+. .|+ ...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 45788888999999999999999998763 366789999999999997 99999999999985 444 444444444
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHH
Q 043580 428 AIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLT 506 (665)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 506 (665)
++. ..|++++|+..|+++... +.+...|..+..++...|++++|
T Consensus 175 ~~~-----------------------------------~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 175 LVE-----------------------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHH-----------------------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHH-----------------------------------HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 444 445555555555555554 33455677777777777777777
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHhcc-cChHHHH-----HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC--ChHHH
Q 043580 507 LKIYSDLEKRNIKLNSITFIGVLSTCCH-AGLVDLG-----ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG--QLEDA 577 (665)
Q Consensus 507 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A 577 (665)
+..++++++.. +-+...|+.+..++.. .|..++| +..+++... +.| +...|..+..++...| ++++|
T Consensus 220 l~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 220 LQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHH
Confidence 77777777754 4466677777777777 4554555 577888774 478 6788888888888877 68899
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHhc
Q 043580 578 EEVIRSMPMKA-DVVIWGTLLAASRIHG--------N-VEVGERAAKSL-AGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 578 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.+.++++...| +...+..++.+|.+.| + +++|+.+++++ .+++|.....|..++..+...
T Consensus 296 ~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 296 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 98888874334 5677888888888764 3 58999999999 999999999998888776654
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=3.4e-14 Score=131.22 Aligned_cols=180 Identities=8% Similarity=0.010 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...++++... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344455666666777777777777766655 3345677778888888888888888888888764 45677888888899
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|...++++.+. .| +...+..++.++...|++++|...++++. .+.+...+..+..++...|++++|
T Consensus 136 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999998864 55 68888899999999999999999998875 334678899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
...+++++++.|+++..+..++.+....
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999999999998887776554433
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1e-12 Score=123.54 Aligned_cols=229 Identities=9% Similarity=-0.075 Sum_probs=179.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS----SGTLKEGRWAHEYVLNNSITLNDNLSA 458 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 458 (665)
++.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445666667777777777777777777762 234555666666666 777777777777777765 556667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHchhCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 043580 459 AIIDMYAK----CGSINTAFEVFYHIRDRTTSVSPWNAIICGLAM----HGDANLTLKIYSDLEKRNIKLNSITFIGVLS 530 (665)
Q Consensus 459 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 530 (665)
.+...|.. .+++++|...|++.... .+..++..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 77777887 88888888888888775 366778888888888 899999999999998865 5667777777
Q ss_pred Hhcc----cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043580 531 TCCH----AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI 602 (665)
Q Consensus 531 ~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 602 (665)
.|.. .+++++|..+|++..+. .++..+..+..+|.. .+++++|...+++.....+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7777 89999999999998864 256778888899988 99999999999987644457888888889988
Q ss_pred ----cCCHHHHHHHHHHHhccCCCCCc
Q 043580 603 ----HGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 603 ----~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+++++|...++++.++.|++..
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998886544
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=5.3e-13 Score=123.95 Aligned_cols=207 Identities=11% Similarity=0.016 Sum_probs=151.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
...+..+...+...|++++|+..|+++.+.. +.+. ..+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----------------------------------DAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----------------------------------HHHHHHHHH
Confidence 4556667777777777777777777766542 1122 334445555
Q ss_pred HHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHH
Q 043580 464 YAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 541 (665)
|...|++++|.+.++++... +.+...+..+...+...|++++|.++++++...+..| +...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665554 2345567777777778888888888888877633344 456777788888888999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 542 ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
...++++.+. .| +...+..++.+|...|++++|...++++. .+.+...+..+...+...|+.++|...++++.+
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999888854 56 67888889999999999999999998875 334677788888889999999999999999999
Q ss_pred cCCCCCchHHH
Q 043580 619 LQPSHGPSRVL 629 (665)
Q Consensus 619 ~~p~~~~~~~~ 629 (665)
..|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998775443
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.2e-13 Score=128.40 Aligned_cols=221 Identities=12% Similarity=0.018 Sum_probs=183.7
Q ss_pred HccCcHHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHH
Q 043580 430 ASSGTLKEGRWAHEYVLNNSIT---LNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 505 (665)
...|++++|...++.+.+.... .+...+..+...+...|++++|...|+++... +.+...|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 3457899999999999876421 23567888999999999999999999999887 4457789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
|...++++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999874 456789999999999999999999999999864 6754444455556677899999999997765
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 586 --MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 586 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+++...+ .++..+...++.++|...++++++..|.. +..+..++.+|...|++++|.+.++++++...
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 33344444 46777888899999999999999887753 57789999999999999999999999988653
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=4.5e-13 Score=120.72 Aligned_cols=192 Identities=10% Similarity=-0.009 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYA 465 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (665)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33444444444444444444444444321 1122333333333344444444444444433332 112233333444444
Q ss_pred hc-----------CCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 466 KC-----------GSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 466 ~~-----------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
.. |++++|...+++.....| +...+..+...+...|++++|+..+++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 666666666666555423 34455556666666666666666666666654 55556666666666
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
..|++++|+..|+++.+. .| +...+..+..++...|++++|...+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666643 45 4555666666666666666666665544
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.4e-12 Score=118.54 Aligned_cols=205 Identities=14% Similarity=0.053 Sum_probs=152.5
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH 500 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 500 (665)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++... +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3344444445555555555555544432 223445566677777777778887777777665 33556777888888888
Q ss_pred -CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 501 -GDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 501 -~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
|++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHH
Confidence 899999999988887333343 567888888899999999999999998864 56 688888999999999999999
Q ss_pred HHHHHhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 578 EEVIRSMP--MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 578 ~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
...++++. .+ .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99998875 33 4677777777778899999999999999999999988865544
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=5.3e-14 Score=141.45 Aligned_cols=263 Identities=11% Similarity=-0.015 Sum_probs=177.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC-h----hHHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCChhHHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGVKPN-E----ITMVSVFCAIASSGTLKEGRWAHEYVLNN----SI-TLNDNLSA 458 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 458 (665)
.+...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|++++|...++...+. +. ......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34445555666666666666655532 22 1 23445555556666666666666655432 11 11224556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhC----C---CCcchHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDR----T---TSVSPWNAIICGLAMHGD-----------------ANLTLKIYSDLE 514 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~----~---~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~ 514 (665)
.+...|...|++++|...+++.... . ....++..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6667777777777777777665543 1 112356677777777888 788887777765
Q ss_pred Hc----CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 515 KR----NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 515 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
+. +-.+ ...++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|...++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 1111 2346777888888899999999999888753111112 3377888899999999999999988875
Q ss_pred C----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 586 M----KA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 586 ~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
. .. ...++..+...+...|++++|...+++++++.++.. ..+..++.+|...|++++|.+++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 256778888889999999999999999987755443 368889999999999999999999987
Q ss_pred hC
Q 043580 652 DC 653 (665)
Q Consensus 652 ~~ 653 (665)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=1.1e-13 Score=140.74 Aligned_cols=209 Identities=10% Similarity=-0.017 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSI-NTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
+.+...++..... .+.+...+..+...+...|++ ++|.+.|++.....| +...|..+..+|...|++++|...|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444433322 233556777788888888898 999998888877634 4678899999999999999999999999
Q ss_pred HHcCCCCChHHHHHHHHHhccc---------ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc--------CChH
Q 043580 514 EKRNIKLNSITFIGVLSTCCHA---------GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA--------GQLE 575 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~ 575 (665)
.+. .|+...+..+...+... |++++|++.|++..+. .| +...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 985 57778899999999999 9999999999999864 77 788999999999998 9999
Q ss_pred HHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 576 DAEEVIRSMP-MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 576 ~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+|+..++++. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999986 344 78999999999999999999999999999999999999999999999999999999765443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.3e-13 Score=138.34 Aligned_cols=295 Identities=12% Similarity=0.016 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----cchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-hh
Q 043580 353 IASWNALIAGFIRNGMIEDARQLFNNMQK--R-D----VYSWSAMISGYAQNEQPNMALELFHGMVDA----GVKPN-EI 420 (665)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~ 420 (665)
...+......+...|++++|...|+...+ + + ...+..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455566667777777777777766542 2 2 235566666677777777777777665432 11111 23
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCC--------------------HHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNN----SITL-NDNLSAAIIDMYAKCGS--------------------INTAFE 475 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~--------------------~~~A~~ 475 (665)
.+..+...+...|++++|...+....+. +..+ ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4445555666666666666666665432 1110 12345555556666666 666665
Q ss_pred HHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHHHHHHHHHhcccChHHHHHH
Q 043580 476 VFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-KLN----SITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 476 ~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
.+.+.... .++ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55554332 111 12345555555566666666666655543210 111 1245555555556666666666
Q ss_pred HHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 043580 544 YFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD----VVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 544 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.+++..+...-.++ ..++..++.+|...|++++|...++++. ..++ ..++..+..++...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66555432100111 3445555555566666666666555543 0111 3344555555556666666666
Q ss_pred HHHHHhccCCCCCc------hHHHHHHHHHhcCChhHHHHHH
Q 043580 612 AAKSLAGLQPSHGP------SRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 612 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
.+++++++.+.... .+..++.++...|+...+..-+
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 66666665555532 2445555555555555443333
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2e-13 Score=132.88 Aligned_cols=263 Identities=11% Similarity=0.020 Sum_probs=182.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHH
Q 043580 390 MISGYAQNEQPNMALELFHGMVDAGVKPN-----EITMVSVFCAIASSGTLKEGRWAHEYVLNN----SITL-NDNLSAA 459 (665)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 459 (665)
....+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++...+. +..+ ....+..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445556666666666666666542 22 234455556666666666666666665431 1111 1345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGD--------------------ANLTLKIYSD 512 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 512 (665)
+...+...|++++|...+++.... .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 777777888888888877776554 122 2266777777888888 8888888877
Q ss_pred HHHc----CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhHHHHHhhHhhhcCChHHHHHHHHh
Q 043580 513 LEKR----NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRS 583 (665)
Q Consensus 513 ~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (665)
.... +..+ ....+..+...+...|++++|...+++..+...-.+ ...++..++.++...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 1111 234677788888899999999999998875311111 234788889999999999999999988
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCChhHHHHHHHH
Q 043580 584 MP----MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 584 ~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
.. ..++ ..++..+...+...|++++|...+++++++.|... ..+..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 75 1122 56778888999999999999999999988765443 3678899999999999999999999
Q ss_pred HHhCC
Q 043580 650 MRDCG 654 (665)
Q Consensus 650 ~~~~~ 654 (665)
+++..
T Consensus 329 a~~~~ 333 (338)
T 3ro2_A 329 HLEIS 333 (338)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 98753
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.6e-13 Score=116.94 Aligned_cols=169 Identities=9% Similarity=-0.009 Sum_probs=148.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST 531 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 531 (665)
+..+|..+...|...|++++|++.|++..+. +.+..++..+..++...|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 4567888999999999999999999998887 4456788999999999999999999999998864 4566778888888
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 608 (665)
+...++++.|...+.+.... .| +...+..+..+|.+.|++++|++.++++. .+.+...|..++.++.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999999854 67 78889999999999999999999999986 33478899999999999999999
Q ss_pred HHHHHHHHhccCCCCCc
Q 043580 609 GERAAKSLAGLQPSHGP 625 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~ 625 (665)
|+..++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998643
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=137.63 Aligned_cols=265 Identities=8% Similarity=-0.064 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcc--CCc-----hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------Cc
Q 043580 321 YDFIQATIIHFYAACGRINLARLQFELGI--KDH-----IASWNALIAGFIRNGMIEDARQLFNNMQKR---------DV 384 (665)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~ 384 (665)
....+......+...|+++.|...+++.+ .|+ ...+..+...+...|++++|...++..... ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33445556666777777777777776533 222 235666667777777777777766654311 23
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHccCc--------------------HHHHH
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGV-KPN----EITMVSVFCAIASSGT--------------------LKEGR 439 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~ 439 (665)
.++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3566666777777777777777776654210 011 2355556666667777 77777
Q ss_pred HHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHH
Q 043580 440 WAHEYVLNN----SITLN-DNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTL 507 (665)
Q Consensus 440 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~ 507 (665)
..+....+. +..+. ..++..+...|...|++++|...+++.... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 776665432 11111 234556666777777777777777766554 111 125666666777777777777
Q ss_pred HHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhHHHHHhhHhhhcCChHHHH
Q 043580 508 KIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 508 ~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
..+++..+.... ++ ..++..+...+...|++++|...+++..+...-.+ ...++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766543100 11 34566666677777777777777776654311111 1445666777777777777777
Q ss_pred HHHHhCC
Q 043580 579 EVIRSMP 585 (665)
Q Consensus 579 ~~~~~~~ 585 (665)
..+++..
T Consensus 328 ~~~~~al 334 (406)
T 3sf4_A 328 HFAEKHL 334 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=7.8e-13 Score=139.64 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=145.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHh
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMV 565 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 565 (665)
..+++.|...+...|++++|++.|++.++.. +-+...+..+..+|.+.|++++|++.|++..+. .| +...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4578888888889999999999999888863 446778999999999999999999999999854 78 688999999
Q ss_pred hHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
.+|...|++++|++.++++. ..| +...|..++.++...|++++|+..++++++++|+++..+..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999999886 344 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 043580 644 FSIRKEMRDC 653 (665)
Q Consensus 644 ~~~~~~~~~~ 653 (665)
.+.++++++.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=2.7e-11 Score=115.83 Aligned_cols=221 Identities=8% Similarity=-0.026 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHH-------ccCcH-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 043580 401 NMALELFHGMVDAGVKPNEITMVSVFCAIA-------SSGTL-------KEGRWAHEYVLNNSITLNDNLSAAIIDMYAK 466 (665)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (665)
++|..+|++..... +-+...|..+...+. ..|++ ++|..++++.++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666777766632 223344444444443 23554 6777777777663223344567777777788
Q ss_pred cCCHHHHHHHHHHchhCCCC-cc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc-ccChHHHHHH
Q 043580 467 CGSINTAFEVFYHIRDRTTS-VS-PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC-HAGLVDLGER 543 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~ 543 (665)
.|++++|..+|+++....|+ .. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888777554 33 67778888888888888888888888754 344455544333322 2588888888
Q ss_pred HHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043580 544 YFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KA--DVVIWGTLLAASRIHGNVEVGERAAKSL 616 (665)
Q Consensus 544 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (665)
+|++..+. .| +...|..++..+.+.|++++|..+|+++.. .| ....|..++....+.|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888754 45 677788888888888888888888888753 33 3567777788888888888888888888
Q ss_pred hccCCCCCch
Q 043580 617 AGLQPSHGPS 626 (665)
Q Consensus 617 ~~~~p~~~~~ 626 (665)
++..|++...
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 8888876543
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=2.1e-12 Score=113.31 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 4445555556666666666666655432 335556666667777777777777777777643 44 566677777777
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
...|++++|.+.++++. .+.+...+..++.++...|++++|...++++++..|+++..+..++.++...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777764 3346677778888888888888888888888888888888888888888888999999888
Q ss_pred HHHHHhCC
Q 043580 647 RKEMRDCG 654 (665)
Q Consensus 647 ~~~~~~~~ 654 (665)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88887754
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=9.7e-13 Score=130.60 Aligned_cols=227 Identities=7% Similarity=-0.038 Sum_probs=161.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCC-----cchHH
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNN----SITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTS-----VSPWN 491 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~~~ 491 (665)
....+...|++++|...++...+. +-.+ ...++..+...|...|+++.|...+.+.... .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334556667777777777777642 1111 2245667777888888888888887776654 111 23577
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC-ChhHHH
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP-DLKHYG 562 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 562 (665)
.+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|.+.+++..+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888999988888887753111 11 2367788888899999999999998887521 1214 466788
Q ss_pred HHhhHhhhcCChHHHHHHHHhCC------CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMP------MKA-DVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
.++.+|.+.|++++|...+++.. ..| ....+..+...+...|+ +++|+.++++. ...|.....+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999988875 112 12234567777888888 88888888877 444555566888999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043580 633 IYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~~~ 652 (665)
+|...|++++|.++++++++
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999977
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=2.9e-12 Score=116.81 Aligned_cols=191 Identities=12% Similarity=-0.030 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRT--TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST 531 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 531 (665)
+..+......+...|++++|...|++..... ++...+..+..++...|++++|+..+++..+.. +.+...+..+...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 3445555555555666666666665555542 344444445555555555555555555555532 2233445555555
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-Ch-------hHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DL-------KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD---VVIWGTLLAA 599 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~ 599 (665)
+...|++++|...+++..+. .| +. ..|..+...+...|++++|++.++++. ..|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555555532 34 23 234444455555555555555555543 2232 2334444444
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+... +...++++..+.+..+..+.. ......+.+++|++.++++++...
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4322 223334444444433222221 123333445999999999988654
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=2.4e-12 Score=130.88 Aligned_cols=183 Identities=9% Similarity=-0.055 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHH
Q 043580 469 SINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDA-NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
.++++...++......| +...+..+...+...|++ ++|+..+++..+.. +.+...|..+...|...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777666534 567888899999999999 99999999999874 4467899999999999999999999999
Q ss_pred HhHhhcCCCCChhHHHHHhhHhhhc---------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc--------CCHH
Q 043580 547 SMKSVYNVEPDLKHYGCMVDLLGRA---------GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH--------GNVE 607 (665)
Q Consensus 547 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------g~~~ 607 (665)
+.. .+.|+...+..+..+|... |++++|+..++++. .+.+...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999 5578888999999999999 99999999999986 344788999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 608 VGERAAKSLAGLQP---SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 608 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|+..++++++++| +++..+..++.+|...|++++|.+.|+++++...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988643
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=2.3e-11 Score=116.33 Aligned_cols=215 Identities=10% Similarity=-0.037 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHHHchh-CCC-CcchHHHHHHHHHh
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYA-------KCGSI-------NTAFEVFYHIRD-RTT-SVSPWNAIICGLAM 499 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~ 499 (665)
+.|..+|+.++... +.++..+..++..+. +.|++ ++|..+|++... ..| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887653 445566766766665 35876 899999999998 455 45589999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hH-HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh-hcCChH
Q 043580 500 HGDANLTLKIYSDLEKRNIKLN-SI-TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG-RAGQLE 575 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 575 (665)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|++..+ ..| +...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999984 554 44 799999999999999999999999985 455 5566655444432 369999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 576 DAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGL---QPS-HGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 576 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
+|..+|+++. .+.+...|..++..+.+.|++++|..+++++++. .|+ ....+..++..+...|+.++|.+++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999986 3347889999999999999999999999999985 554 566788899999999999999999999
Q ss_pred HHhCCCc
Q 043580 650 MRDCGMK 656 (665)
Q Consensus 650 ~~~~~~~ 656 (665)
+++...+
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9886553
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=130.86 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=124.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc------CC
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDA-------GVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN------SI 450 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 450 (665)
..++..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...++.+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346677777777888888888888777652 11122234444555555555555555555555432 11
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-Ch
Q 043580 451 TL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKR------NIKL-NS 522 (665)
Q Consensus 451 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~ 522 (665)
.+ .... +..+...+...|++++|...++++.+. +-.| ..
T Consensus 107 ~~~~~~~---------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 107 HPAVAAT---------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp CHHHHHH---------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ChHHHHH---------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 11 1233 444444445555555555555444432 1111 22
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhc-----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----------
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVY-----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM---------- 586 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 586 (665)
..+..+...+...|++++|.++++++.+.. +..| ...++..++.+|...|++++|...++++..
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345555556666666666666666655321 1123 344556666666666666666666655531
Q ss_pred CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 587 KA-------DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 587 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+ ....+..+...+...+.+.++...++++....|.....+..++.+|...|++++|.++++++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 01 01112222233344556666677777777777888888888888888888888888888888764
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.3e-12 Score=131.27 Aligned_cols=264 Identities=10% Similarity=0.006 Sum_probs=164.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-Cc----chHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-ChhHHHHHH
Q 043580 359 LIAGFIRNGMIEDARQLFNNMQK--R-DV----YSWSAMISGYAQNEQPNMALELFHGMVDA----GVKP-NEITMVSVF 426 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll 426 (665)
+...+...|++++|...|+...+ + +. ..+..+...|...|++++|+..+++..+. +..| ....+..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33344444555555554444331 1 11 24455555555555666655555554432 1111 123344455
Q ss_pred HHHHccCcHHHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCC-----------------HHHHHHHHHHchhC-
Q 043580 427 CAIASSGTLKEGRWAHEYVLNN----SIT-LNDNLSAAIIDMYAKCGS-----------------INTAFEVFYHIRDR- 483 (665)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~~- 483 (665)
..+...|++++|...+....+. +-. .....+..+...|...|+ +++|.+.+++....
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555666666666666555432 111 122355566667777777 77777776665442
Q ss_pred ---C---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhc
Q 043580 484 ---T---TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVY 552 (665)
Q Consensus 484 ---~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 552 (665)
. .....+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 11235677777888888888888888877653211 11 2367788888899999999999998877531
Q ss_pred CCCC----ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 553 NVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 553 ~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
.-.. ...++..++.+|...|++++|...++++.. .+ ...++..+..++...|++++|...+++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 256778889999999999999999988751 11 24577788889999999999999999998877
Q ss_pred CC
Q 043580 621 PS 622 (665)
Q Consensus 621 p~ 622 (665)
+.
T Consensus 374 ~~ 375 (411)
T 4a1s_A 374 XX 375 (411)
T ss_dssp CH
T ss_pred hh
Confidence 64
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=2.2e-09 Score=112.02 Aligned_cols=219 Identities=9% Similarity=-0.027 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHc
Q 043580 402 MALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGR-WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHI 480 (665)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 480 (665)
.+..+|++.... ++-....|.....-+...|+.+.|. .+++..... .+.+...+...+....+.|+++.|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2334455555555566667777775 777777653 2344555666777777788888888888777
Q ss_pred hhC-----------CCC------------cchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHhccc-
Q 043580 481 RDR-----------TTS------------VSPWNAIICGLAMHGDANLTLKIYSDLEKR-NIKLNSITFIGVLSTCCHA- 535 (665)
Q Consensus 481 ~~~-----------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~- 535 (665)
... .|+ ...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 653 121 235777777778889999999999999876 2 22334444333333333
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A 609 (665)
++.+.|.++|+...+. .| +...+...++.....|+.+.|..+|+++... | ....|...+.--.+.|+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp SCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4589999999999876 34 5667778888888899999999999998732 3 346788888888889999999
Q ss_pred HHHHHHHhccCCCCCch
Q 043580 610 ERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~ 626 (665)
..+.+++.+..|+++..
T Consensus 561 ~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHhCCCCcHH
Confidence 99999999999998763
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=1.5e-11 Score=112.06 Aligned_cols=208 Identities=9% Similarity=-0.006 Sum_probs=165.9
Q ss_pred CChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHH
Q 043580 417 PNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIIC 495 (665)
Q Consensus 417 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 495 (665)
.++..+......+...|++++|...++...+...+++...+..+..++...|++++|...+++.....| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888889999999999999999999887556777777799999999999999999999998745 4568899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNS-------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMV 565 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 565 (665)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999999864 3345 457788888899999999999999998 45775 56788888
Q ss_pred hHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
.+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|+++.....|+.+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766543 233322 122344443332 445677999999999999999999988887776543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=4.2e-10 Score=111.08 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=70.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHH-----
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKL----NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYG----- 562 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----- 562 (665)
.+...+...|++++|...+++........ ...++..+...+...|++++|...+++......-......+.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 34444455555555555555544321110 112344444445555555555555555443211000111111
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMK-AD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLL 630 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l 630 (665)
..+..+...|++++|...+++.... |. ...+..+...+...|++++|...++++.+..+... ..+..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1222344555555555555554311 11 12334444555555555555555555544332211 134445
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043580 631 SNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+.++...|++++|.+.++++.+
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=2.5e-11 Score=120.36 Aligned_cols=232 Identities=6% Similarity=-0.082 Sum_probs=167.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCC-CCCC----hhHHHHHHHHHHccCcHHHHHHHHHHHHHcC--CC---C-ChhHHH
Q 043580 390 MISGYAQNEQPNMALELFHGMVDAG-VKPN----EITMVSVFCAIASSGTLKEGRWAHEYVLNNS--IT---L-NDNLSA 458 (665)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~-~~~~~~ 458 (665)
....+...|++++|+..|++..+.- -.++ ...+..+...+...|+++.|...+....+.. .. + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4455666777777777777766531 0122 2455666667777777777777777765421 11 1 124567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhC---CCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHHHH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDR---TTSV----SPWNAIICGLAMHGDANLTLKIYSDLEKR----NI-KLNSITFI 526 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~ 526 (665)
.+...|...|++++|...+++.... .++. .++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888999999999888887654 1221 36788889999999999999999988772 22 23456788
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCC--CC-ChhHHHHHhhHhhhcCC---hHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNV--EP-DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMPMKA-DVVIWGTLLAA 599 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 599 (665)
.+...+...|++++|...+++..+...- .| ....+..+...|...|+ +++|+.++++....| ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999998753111 22 23345678888999999 999999999986544 34567788899
Q ss_pred HHhcCCHHHHHHHHHHHhccCC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p 621 (665)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999976543
No 77
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=6.6e-12 Score=122.09 Aligned_cols=238 Identities=11% Similarity=0.006 Sum_probs=148.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CC----hh
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDA----GVKP-NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT-LN----DN 455 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 455 (665)
.+..+...+...|++++|...+++.... +..| ....+..+...+...|++++|...+....+.... ++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555544321 1111 1223444455555556666666555555431100 11 22
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHchhC---CC----CcchHHHHHHHHHhcCChHHHHH
Q 043580 456 LSAAIIDMYAKCGS--------------------INTAFEVFYHIRDR---TT----SVSPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 456 ~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~ 508 (665)
++..+...+...|+ +++|...+++.... .+ ....+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45556666666666 66776666655432 11 12356677778888888888888
Q ss_pred HHHHHHHcCC-CCC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHH
Q 043580 509 IYSDLEKRNI-KLN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEE 579 (665)
Q Consensus 509 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 579 (665)
.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8887765310 111 236778888888999999999999887753111111 5677888999999999999999
Q ss_pred HHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 580 VIRSMPM----KAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 580 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
.++++.. .++ ..++..+...+...|++++|...+++++++.++.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9988751 122 4577788899999999999999999999887653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=2.8e-11 Score=106.07 Aligned_cols=169 Identities=11% Similarity=-0.003 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..+..+...+...|++++|...++++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34566778888999999999999998877 4456778889999999999999999999999864 557788889999999
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
..|++++|.+.++++.+. .| +...+..++.++...|++++|...++++. .+.+...+..++..+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999864 55 78889999999999999999999999875 3346788999999999999999999
Q ss_pred HHHHHHhccCCCCCchH
Q 043580 611 RAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~~~ 627 (665)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999887643
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.8e-11 Score=121.02 Aligned_cols=224 Identities=10% Similarity=-0.013 Sum_probs=144.6
Q ss_pred HHHccCcHHHHHHHHHHHHHcCC-CC----ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCC-----cchHHHHH
Q 043580 428 AIASSGTLKEGRWAHEYVLNNSI-TL----NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTS-----VSPWNAII 494 (665)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~~~~l~ 494 (665)
.+...|++++|...++...+... .+ ...++..+...|...|+++.|...+.+.... .++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 33455666666666666543211 01 1234556667777777777777777665543 111 23566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CCC-ChhHHHHHhh
Q 043580 495 CGLAMHGDANLTLKIYSDLEKR----NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VEP-DLKHYGCMVD 566 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p-~~~~~~~l~~ 566 (665)
..|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|.+.+++..+... ..| ...++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7777888888888877776653 1111 124667777888888888888888888775111 234 4667778888
Q ss_pred HhhhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 567 LLGRAGQLEDAEEVIRSMP----M--KAD-VVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
+|.+.|++++|...+++.. . .|. ...+..+...+...|+ +++|+..+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 8888888888888887764 1 122 2344555555667777 77777777763 2334444557788999999
Q ss_pred cCChhHHHHHHHHHHh
Q 043580 637 AGRWEDAFSIRKEMRD 652 (665)
Q Consensus 637 ~g~~~~A~~~~~~~~~ 652 (665)
.|++++|.+.++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988865
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=3.6e-12 Score=122.48 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=147.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---CcchHHHHHHHHHhCCCchHHHHHHHHHHHC------C
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQK--------R---DVYSWSAMISGYAQNEQPNMALELFHGMVDA------G 414 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 414 (665)
+..++..+...+...|++++|...++.+.+ . ....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999988764 2 3457888999999999999999999998764 2
Q ss_pred CCC-ChhHHHHHHHHHHccCcHHHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC
Q 043580 415 VKP-NEITMVSVFCAIASSGTLKEGRWAHEYVLNN------SITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS 486 (665)
Q Consensus 415 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 486 (665)
-.| ....+..+...+...|++++|...++.+.+. +..| ....+..+...+...|++++|.+.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--- 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 222 3456777778888889999998888887653 1111 1233444455555555555555555444331
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc------CCCC-Ch
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY------NVEP-DL 558 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p-~~ 558 (665)
++.... +..| ...++..+...+...|++++|.++++++.+.. ...+ ..
T Consensus 183 -----------------------~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 183 -----------------------YQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp -----------------------HHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred -----------------------HHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 000000 1111 22345555666666666666666666655320 1112 11
Q ss_pred hH------HHHHhhHhhhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 559 KH------YGCMVDLLGRAGQLEDAEEVIRSMPM-KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 559 ~~------~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.. +..+...+...+.+.+|...++.... .| ...++..+..+|...|++++|...+++++++.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12 22233334455666666666766652 23 5677888999999999999999999999988775
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=5.3e-09 Score=109.12 Aligned_cols=418 Identities=9% Similarity=-0.004 Sum_probs=267.1
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHhhcCC---hhHHHHHHHHHHHCC-CCCCHHHHH
Q 043580 219 RNIVSWNVMLNGFAKAGLVELARELFERIPS--K-DVVSWGTMIDGYLQVER---LSEALTMYRAMLCDG-IAPNDVMIV 291 (665)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~~~~ 291 (665)
.|..+|..++..+.+.+.++.+..+|+++.. | ....|..-+..-.+.++ ++.+..+|++..... ..|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4667899999999889999999999998875 3 44567777777777888 999999999988753 247888777
Q ss_pred HHHHHhhcccch--------hhHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCChHHHHHHHHhccCC
Q 043580 292 DLISACGRAMAF--------GEGLQIHSIIVK-AGF-DCY-DFIQATIIHFYAA---------CGRINLARLQFELGIKD 351 (665)
Q Consensus 292 ~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~ 351 (665)
..+....+.++. +.+.++|+..+. .|. .++ ..++...+..... .++++.+..+|++.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 777665554443 334466666554 355 443 4566666665442 23456677777765532
Q ss_pred ch----hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH--CCCC---------
Q 043580 352 HI----ASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVD--AGVK--------- 416 (665)
Q Consensus 352 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~--------- 416 (665)
.. .+|......--..+. ..+.+++.+ ...+++.|...+.++.. .++.
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred ccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 11 222221111000000 001111111 01122333333333221 0110
Q ss_pred ------C--C---h---hHHHHHHHHHHccC-------cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-
Q 043580 417 ------P--N---E---ITMVSVFCAIASSG-------TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF- 474 (665)
Q Consensus 417 ------p--~---~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~- 474 (665)
| + . ..|...+.---..+ ..+.+..+++.++... +....++...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 0 11222221111111 1234556777776642 446677777788888889999996
Q ss_pred HHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------hHHHHHHHHHh
Q 043580 475 EVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI---------KLN------------SITFIGVLSTC 532 (665)
Q Consensus 475 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~ 532 (665)
.+|++.....| +...|...+....+.|+++.|.++|++++.... .|+ ...|...+...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999887644 455677788888899999999999999987410 142 23577777777
Q ss_pred cccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc-CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA-GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
.+.|+.+.|..+|.++.+. .-.+....|...+..-.+. ++.+.|..+|+... .+.+...|...+......|+.+.|
T Consensus 445 rR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 7889999999999999864 0112344555444444444 45899999999886 334677788888888889999999
Q ss_pred HHHHHHHhccCCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 610 ERAAKSLAGLQPS---HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 610 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
..+|++++...|+ ....+..+...-...|+.+.+.++.+++.+.-.+
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999998884 4455777777788899999999999999886543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=1.5e-09 Score=107.13 Aligned_cols=230 Identities=9% Similarity=-0.013 Sum_probs=165.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHccCcHHHHHHHHHHHHHcC--C---CC-ChhHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGV-KPN----EITMVSVFCAIASSGTLKEGRWAHEYVLNNS--I---TL-NDNLS 457 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~ 457 (665)
.....+...|++++|+..|++..+... .++ ...+..+...+...|+++.|...+....+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455677777777777777665311 122 2345666677777788888877777765421 1 11 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHH
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEK-----RNIKLNSITF 525 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 525 (665)
..+..+|...|++++|.+.|++.... .++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 67888888899999998888877654 122 23577788889999999999999998876 32 3336678
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCC--C-ChhHHHHHhhHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHH
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVE--P-DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMPMKAD-VVIWGTLLA 598 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 598 (665)
..+...+.+.|++++|...+++..+...-. | ....+..+...|...|+ +.+|+..+++....|+ ...+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 889999999999999999999988652221 2 23446667777778888 9999999998654433 456677888
Q ss_pred HHHhcCCHHHHHHHHHHHhcc
Q 043580 599 ASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.|...|++++|...++++++.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998754
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=7.3e-11 Score=111.77 Aligned_cols=191 Identities=9% Similarity=0.005 Sum_probs=128.9
Q ss_pred HHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChHHHHHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI---KL--NSITFIGVL 529 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p--~~~~~~~l~ 529 (665)
..|...|++++|...|.+.... ..+ ..+|+.+..+|...|++++|+..+++..+... .+ -..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456667777777777665543 111 34677777777888888888887777765311 11 134677888
Q ss_pred HHhccc-ChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CH-----HHHHH
Q 043580 530 STCCHA-GLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DV-----VIWGT 595 (665)
Q Consensus 530 ~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~-----~~~~~ 595 (665)
..|... |++++|+..|++..+...-..+ ..++..++..|.+.|++++|+..++++. ..| .. ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 9999999999988754110111 3568888999999999999999998875 222 21 25778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--hcCChhHHHHHHHHHHh
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPS-----RVLLSNIYA--DAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 652 (665)
++.++...|++++|+..++++++++|+.... +..|+.++. ..+++++|++.|+++..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 8888999999999999999999999987654 334555554 45678888888865543
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=8.4e-11 Score=124.22 Aligned_cols=165 Identities=11% Similarity=0.090 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...++.+..+|.+.|++++|++.|++..+..| +..+|..+..+|.+.|++++|+..|++.++.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 46678888899999999999999998888744 46688889999999999999999999998864 44677899999999
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|++.|++..+. .| +...|..+..+|...|++++|++.++++. ..| +...+..++.++...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999854 78 68899999999999999999999999876 344 678899999999999999999
Q ss_pred HHHHHHHhccCCC
Q 043580 610 ERAAKSLAGLQPS 622 (665)
Q Consensus 610 ~~~~~~~~~~~p~ 622 (665)
.+.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999998876543
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=2.9e-10 Score=105.87 Aligned_cols=189 Identities=9% Similarity=-0.084 Sum_probs=133.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-hHHHH
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-KLN-SITFI 526 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~ 526 (665)
+...+..+...+.+.|++++|...|+++....|+ ...+..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3345556677777888888888888888776443 45677777888888888888888888887531 111 34566
Q ss_pred HHHHHhcc--------cChHHHHHHHHHHhHhhcCCCC-ChhHH-----------------HHHhhHhhhcCChHHHHHH
Q 043580 527 GVLSTCCH--------AGLVDLGERYFKSMKSVYNVEP-DLKHY-----------------GCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 527 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p-~~~~~-----------------~~l~~~~~~~g~~~~A~~~ 580 (665)
.+..++.. .|++++|+..|+++.+. .| +.... ..++.+|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66777777 88888888888888865 45 33333 4567788888888888888
Q ss_pred HHhCC-CCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhH
Q 043580 581 IRSMP-MKA----DVVIWGTLLAASRIH----------GNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWED 642 (665)
Q Consensus 581 ~~~~~-~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~ 642 (665)
++++. ..| ....+..++.++... |++++|+..++++++..|+++.. ...+..++...+++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 88875 223 245677777777765 88888999999888888888644 4455556666555554
Q ss_pred HH
Q 043580 643 AF 644 (665)
Q Consensus 643 A~ 644 (665)
+.
T Consensus 251 ~~ 252 (261)
T 3qky_A 251 DA 252 (261)
T ss_dssp CT
T ss_pred hh
Confidence 43
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.6e-11 Score=114.59 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc-----CCCC-
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKR------NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY-----NVEP- 556 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p- 556 (665)
+..+...+...|++++|...+++..+. .-.| ...++..+...+...|++++|..+++++.+.. +-.|
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444444444455555555544444432 0011 23345555555555666666666555554320 0122
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----------CC-CHHHHHHHHHHHHhc------CCHHHHHHHHHHHhcc
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----------KA-DVVIWGTLLAASRIH------GNVEVGERAAKSLAGL 619 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~ 619 (665)
...++..++.+|...|++++|...++++.. .+ ....|..+....... ..+..+...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 344555566666666666666666555430 11 112222222222221 1233444444444444
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 620 QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 620 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.|.....+..|+.+|...|++++|.++++++++.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555666778888888888888888888887663
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.19 E-value=1.6e-11 Score=102.87 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=81.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChH
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 575 (665)
...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++..+. .| ++.+|..+..+|...|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchH
Confidence 3445555555555554432 22 2334445556666666666666666666633 55 5666666666666666666
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 576 DAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGER-AAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 576 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
+|+..++++. ..| ++..|..+...+.+.|++++|.. +++++++++|+++.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666666654 233 45666666666666666654443 3466777777777666666666666664
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=1.5e-10 Score=123.14 Aligned_cols=170 Identities=12% Similarity=0.021 Sum_probs=130.1
Q ss_pred HhcCCHHHHHHHHHHch--------hC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 465 AKCGSINTAFEVFYHIR--------DR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
...|++++|.+.+++.. .. +.+...+..+..++...|++++|+..+++..+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66778888888888776 43 3445677777888888888888888888888753 44667788888888888
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
|++++|++.|+++.+. .| +...+..+..+|.+.|++++ ++.++++. .+.+...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888754 67 67778888888888888888 88887775 334677788888888888888888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888766555
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2.1e-10 Score=106.79 Aligned_cols=169 Identities=8% Similarity=-0.017 Sum_probs=138.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhH
Q 043580 485 TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN---SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKH 560 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 560 (665)
.+...+..+...+...|++++|+..|+++.+.. +.+ ...+..+..++...|++++|+..|+++.+.+.-.| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 445667778888999999999999999999864 223 56788899999999999999999999997622223 2456
Q ss_pred HHHHhhHhhh--------cCChHHHHHHHHhCC-CCC-CHHHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 043580 561 YGCMVDLLGR--------AGQLEDAEEVIRSMP-MKA-DVVIW-----------------GTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 561 ~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~~-~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 613 (665)
+..+..++.. .|++++|+..++++. ..| +...+ ..++.++...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7788889988 999999999999986 223 22333 56688899999999999999
Q ss_pred HHHhccCCCCC---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCC
Q 043580 614 KSLAGLQPSHG---PSRVLLSNIYADA----------GRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 614 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 654 (665)
+++++..|+++ ..+..++.+|... |++++|++.++++++..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999965 4688999999977 89999999999998753
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=2e-09 Score=97.39 Aligned_cols=108 Identities=11% Similarity=-0.021 Sum_probs=77.7
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
...|++++|...|+++.+ ..| +...+..+.....-.+.. ......+...+.+.|+++.|+.
T Consensus 107 ~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFLKDRL---------------AKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp -CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHcCcHHHHHH
Confidence 346788999999999884 367 344433222111110000 0112356777899999999999
Q ss_pred HHHHHhccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 043580 612 AAKSLAGLQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRL 658 (665)
Q Consensus 612 ~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 658 (665)
.++++++..|+++ ..+..++.+|.+.|++++|++.++.+...+....
T Consensus 169 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 169 RVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999986 5588999999999999999999999988765443
No 91
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.17 E-value=3.1e-11 Score=100.38 Aligned_cols=103 Identities=11% Similarity=-0.084 Sum_probs=94.9
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.+.| +...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 6788 68888899999999999999999999986 34478999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|.+|...|++++|++.|+++++...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988653
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=5.5e-11 Score=99.66 Aligned_cols=125 Identities=9% Similarity=-0.056 Sum_probs=107.5
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g 604 (665)
|...+...|++++|+..++... ...| +...+..+..+|.+.|++++|++.++++. .. .+...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999999887 4467 56777789999999999999999999986 33 47899999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH-HHHHHhCCC
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI-RKEMRDCGM 655 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 655 (665)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. ++++++...
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887776 588877544
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=2.3e-09 Score=98.85 Aligned_cols=245 Identities=9% Similarity=0.023 Sum_probs=129.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKRDVY-SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEG 438 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 438 (665)
++-..-.|.+..+..-...+...+.. .-.-+.++|...|++.... .-.|....+..+ ..|...+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~l-a~~~~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLY-VQFLDTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHH-HHHHTTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHH-HHHhccc----H
Confidence 34445567777777655555433222 2223446666666665311 122332222222 2222222 4
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 439 RWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT---SVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
...++...+.+ .++...+..+..++...|++++|++++.+.....| +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555554433 33344444566666667777777777766655432 344555666666777777777777777665
Q ss_pred cCCCC-----ChHHHHHHHHHhcc--cC--hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCC
Q 043580 516 RNIKL-----NSITFIGVLSTCCH--AG--LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPM 586 (665)
Q Consensus 516 ~~~~p-----~~~~~~~l~~~~~~--~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (665)
. .| +..+...++.++.. .| ++.+|..+|+++.+. .|+..+...+..++...|++++|.+.++.+..
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 44 24444555544222 23 666677777776533 34422323333366666777777776664431
Q ss_pred ------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 587 ------------KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 587 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
+.++.++..++......|+ .|.++++++.+..|+++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1244555455555555565 6666777777777766653
No 94
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=3.6e-09 Score=104.39 Aligned_cols=235 Identities=11% Similarity=-0.008 Sum_probs=149.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCh----hHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCC--CC-h
Q 043580 387 WSAMISGYAQNEQPNMALELFHGMVDAGV-KPNE----ITMVSVFCAIASSGTLKEGRWAHEYVLNN----SIT--LN-D 454 (665)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~ 454 (665)
++.+...+...|++++|...+++...... .++. .++..+...+...|++++|...++...+. +.. |. .
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 44455556666777777666666543210 1111 22344555666777777777777766532 221 22 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHH-
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS------VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS-ITFI- 526 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~- 526 (665)
..+..+...+...|++++|...+++.....+. ..++..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 34555777788888888888888776654221 235667777888889999999988887754212211 1121
Q ss_pred ----HHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCC---CH-H
Q 043580 527 ----GVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKA---DV-V 591 (665)
Q Consensus 527 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~---~~-~ 591 (665)
..+..+...|++++|..++++.... ...+. ...+..+..++...|++++|...++++. ..+ +. .
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 2334466889999999999888743 11111 2245677888889999999999988764 111 22 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.+..+..++...|+.++|...+++++++.+.
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5566677788999999999999999876553
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=5.4e-10 Score=91.79 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=95.1
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
.+..+...+...|++++|..+++++.+. .| +...+..++..+...|++++|...++++. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 3455566666677777777777776643 34 55666667777777777777777777664 334566777778888
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888888888888888888888888899999988888887653
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=3.2e-10 Score=98.15 Aligned_cols=160 Identities=9% Similarity=0.032 Sum_probs=117.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH-
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL- 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~- 567 (665)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++... .|++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 44555666677777777777777766643 345667777777888888888888888887644 3443333322222
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChhHH
Q 043580 568 LGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH--GPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A 643 (665)
+...+...+|+..+++.. ..| +...+..+..++...|++++|+..++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 122233445777777765 334 68889999999999999999999999999999986 45899999999999999999
Q ss_pred HHHHHHHHh
Q 043580 644 FSIRKEMRD 652 (665)
Q Consensus 644 ~~~~~~~~~ 652 (665)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=4.3e-09 Score=94.04 Aligned_cols=173 Identities=7% Similarity=-0.069 Sum_probs=142.5
Q ss_pred HHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC----hHHHHHHHHHHh
Q 043580 473 AFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG----LVDLGERYFKSM 548 (665)
Q Consensus 473 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 548 (665)
|.+.|++..+. .++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|.++|++.
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44555555553 566777788888888899999999999988865 56677778888877 6 899999999998
Q ss_pred HhhcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 043580 549 KSVYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKAD----VVIWGTLLAASRI----HGNVEVGERAAKSL 616 (665)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 616 (665)
.+. -++..+..|..+|.. .+++++|+..+++.....+ +..+..|...|.. .++.++|+..++++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 753 267788888888887 8899999999999874433 7889999999988 88999999999999
Q ss_pred hccCCCCCchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 043580 617 AGLQPSHGPSRVLLSNIYADA-G-----RWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 617 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 655 (665)
.++ |.++..+..|+.+|..- | ++++|.+.|+++.+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 77788899999998754 3 89999999999988775
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=4.1e-09 Score=97.14 Aligned_cols=239 Identities=7% Similarity=-0.030 Sum_probs=149.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 043580 394 YAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTA 473 (665)
Q Consensus 394 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 473 (665)
..-.|++..++.-...+ ..........-+.+++...|++... ..-.|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34567777777633222 1111222333344666666665431 11122222333333332 222 6
Q ss_pred HHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 474 FEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 474 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
...|++.... .++..++..+..++...|++++|++++.+.+..+-. -+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776655 355555667777888888888888888887765521 34566777788888888888888888888754
Q ss_pred cCCCC-----ChhHHHHHhhH--hhhcC--ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Q 043580 552 YNVEP-----DLKHYGCMVDL--LGRAG--QLEDAEEVIRSMPMK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGL-- 619 (665)
Q Consensus 552 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 619 (665)
.| +..+...|+.+ ....| ++.+|..+|+++..+ |+..+...++.++.+.|++++|...++.+.+.
T Consensus 166 ---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 ---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred ---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 24555555555 33334 888888888887644 55333344445778888888888888877765
Q ss_pred --------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 620 --------QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 620 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777777777777776 7888888887754
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=1.4e-09 Score=102.53 Aligned_cols=164 Identities=12% Similarity=-0.020 Sum_probs=137.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHH-
Q 043580 485 TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGC- 563 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~- 563 (665)
.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++... .|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 445567777888889999999999999998864 446778889999999999999999999999854 675443332
Q ss_pred HhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH--GPSRVLLSNIYADAGR 639 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 639 (665)
....+...++.++|...+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ...+..|+.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3334667888899999998875 44478899999999999999999999999999999998 7889999999999999
Q ss_pred hhHHHHHHHHHHh
Q 043580 640 WEDAFSIRKEMRD 652 (665)
Q Consensus 640 ~~~A~~~~~~~~~ 652 (665)
.++|...+++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998765
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=5e-10 Score=117.26 Aligned_cols=161 Identities=11% Similarity=-0.029 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHH
Q 043580 467 CGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
.|++++|.+.+++.... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46788888888888776 3346678888888888888888888888888764 445677888888888888888888888
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcc
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH---GNVEVGERAAKSLAGL 619 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 619 (665)
++..+. .| +...+..+..+|...|++++|.+.++++. .+.+...+..+..++... |++++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888854 66 67788888888888888888888888875 334577788888888888 8888888888888888
Q ss_pred CCCCCchHHHHH
Q 043580 620 QPSHGPSRVLLS 631 (665)
Q Consensus 620 ~p~~~~~~~~l~ 631 (665)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 888888777765
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=1.1e-09 Score=97.65 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=117.8
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCC-cchHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTS-VSPWNA----------------IICGLAMHGDANLTLKIYSDLEKRNIKLNSIT 524 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 524 (665)
..+...|++++|...|++.....|+ ...|.. +..++...|++++|+..+++.++.. +.+...
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 90 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDC 90 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHH
Confidence 3445556666666666655554222 334444 8888999999999999999999864 457788
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ--LEDAEEVIRSMPMKADV--VIWGTLLAA 599 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~ 599 (665)
+..+...+...|++++|+..|+++.+. .| +...+..+..+|...|+ .+.+...++... .|++ ..+.....+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 999999999999999999999999954 78 78899999998876654 455666666665 3433 345556777
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+...|++++|+..+++++++.|+..
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCHH
Confidence 8889999999999999999999743
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.7e-09 Score=102.30 Aligned_cols=173 Identities=8% Similarity=-0.081 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCC---CC----cchHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----h
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRT---TS----VSPWNAIICGLAMH-GDANLTLKIYSDLEKRNIKL-N----S 522 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~ 522 (665)
++..+..+|...|++++|...+++..... .+ ..++..+...|... |++++|+..+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44555556666666666666665554431 11 23566777777775 88888888888877632111 1 3
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---h-----hHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH---
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---L-----KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV--- 590 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~--- 590 (665)
.++..+...+...|++++|+..|++..+. .|+ . ..+..++.++...|++++|...+++.. ..|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 46777888888899999999999988854 332 1 146777888888899999999998875 33431
Q ss_pred ---HHHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 591 ---VIWGTLLAASR--IHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 591 ---~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
..+..++.++. ..+++++|+..++++..++|.....+..+-
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 13444555554 456788999999888888887655444443
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.07 E-value=5.3e-10 Score=90.18 Aligned_cols=101 Identities=7% Similarity=0.014 Sum_probs=63.8
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+.| ....+...+..|.+.|++++|++.|+++. .+.+...|..+..++.+.|++++|+..++++++++|+++..+..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 445 34555566666666666666666666654 223556666666666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 043580 631 SNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
|.+|...|++++|++.|+++++..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 666666666666666666666543
No 104
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=2e-09 Score=101.36 Aligned_cols=201 Identities=11% Similarity=-0.006 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHccCcHHHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CC--
Q 043580 420 ITMVSVFCAIASSGTLKEGRWAHEYVLNN------SITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TT-- 485 (665)
Q Consensus 420 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-- 485 (665)
..+..+...+...|++++|...+..+.+. +-.| ...++..+...|...|++++|...+.+.... .+
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555556666666666666666665543 1112 2345666777777777777777777766554 11
Q ss_pred --CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----
Q 043580 486 --SVSPWNAIICGLAMHGDANLTLKIYSDLEKR------NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY---- 552 (665)
Q Consensus 486 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 552 (665)
...++..+...+...|++++|...+++..+. +-.| ...++..+...+...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2345777778888888888888888887764 1122 34577888888999999999999998887531
Q ss_pred --CCCC-ChhHHHHHhhHhhhcC------ChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 553 --NVEP-DLKHYGCMVDLLGRAG------QLEDAEEVIRSMPMK-A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 553 --~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
...+ ....+..+...+...+ .+.++...++..... | ...++..+..++...|++++|..+++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1233 3444444444443333 344444455554422 2 45678889999999999999999999998753
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=4.3e-09 Score=86.29 Aligned_cols=131 Identities=13% Similarity=0.190 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 567 (665)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 45667777778888888888888887754 446667777888888888888888888888754 45 56778888888
Q ss_pred hhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 568 LGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
+...|++++|...++++. .+.+...+..++..+...|++++|...++++++..|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 888899999998888875 33467788888888999999999999999998888763
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.04 E-value=5.1e-10 Score=93.35 Aligned_cols=102 Identities=14% Similarity=0.037 Sum_probs=78.2
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.+.| +...+..+...+...|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4566 56667777777788888888888887765 33467777777778888888888888888888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|++.|+++++..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888888777654
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.2e-09 Score=97.41 Aligned_cols=160 Identities=10% Similarity=-0.012 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHH----------------HHHHhcccChHHHHHHHHHHhHhhc
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIG----------------VLSTCCHAGLVDLGERYFKSMKSVY 552 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 552 (665)
+......+...|++++|+..|++..+. .| +...+.. +..++...|++++|+..|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 344556678899999999999999986 44 4556666 888999999999999999999964
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhccCCCCCchH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGN--VEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.| +...+..+..+|...|++++|+..++++. .+.+...|..++.++...|+ .+.+...++++....|.. ..+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 78 78999999999999999999999999986 33478899999988876654 456677777776543322 236
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+.++.++...|++++|++.|+++++...
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 6788899999999999999999987654
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=4.5e-08 Score=91.43 Aligned_cols=180 Identities=9% Similarity=0.100 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHchhC-CCCcchHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH-
Q 043580 469 SINTAFEVFYHIRDR-TTSVSPWNAIICGL----AMH---GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD- 539 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~- 539 (665)
+++++++.++.+... +.+..+|+.-...+ ... +++++++.+++++.+.. +-|...|+.-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 555555555555554 33344454433333 333 56667777777776653 446666666665666666665
Q ss_pred -HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC------hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC-HHH
Q 043580 540 -LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ------LEDAEEVIRSMP--MKADVVIWGTLLAASRIHGN-VEV 608 (665)
Q Consensus 540 -~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-~~~ 608 (665)
++++.++++.+. .| |...|+....++.+.|+ ++++++.++++. .+-+...|+.+...+.+.|+ .+.
T Consensus 163 ~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 163 AKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 677777777643 55 66666665555555554 666777766654 23366667777666666665 344
Q ss_pred HHHHHHHHhccC---CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 609 GERAAKSLAGLQ---PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 609 A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+.+++++++ |.++.++..|+.+|.+.|+.++|.++++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 555666666655 66667777777777777777777777777765
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=3.8e-09 Score=85.10 Aligned_cols=109 Identities=12% Similarity=0.002 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+......|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|+..++++. .+.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 46777788899999999999999999854 77 78899999999999999999999999986 44578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...|++++|+..++++++++|+++.++..|+.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999888887653
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=1.1e-08 Score=107.13 Aligned_cols=153 Identities=12% Similarity=0.000 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++.. ...| +...+..++.+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887753 4457788888888899999999999999988 4577 6888888999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CChhHHHHHHHHHHhC
Q 043580 579 EVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA---GRWEDAFSIRKEMRDC 653 (665)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 653 (665)
+.++++. .+.+...+..+..++...|++++|...++++++++|+++..+..++.++... |++++|.+.++++++.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998875 3346788888889999999999999999999999999988899999999999 9999999999998886
Q ss_pred CCc
Q 043580 654 GMK 656 (665)
Q Consensus 654 ~~~ 656 (665)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=1.1e-08 Score=91.65 Aligned_cols=127 Identities=9% Similarity=-0.080 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|+..+++..+. .| +...+..++.+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHH
Confidence 4455666677777777777776653 556677777777777777777777777777754 45 566777777777
Q ss_pred hhcCChHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 569 GRAGQLEDAEEVIRSMP-MKA-D----------------VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
...|++++|.+.++++. ..| + ...+..+..++...|++++|...+++++++.|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777664 112 1 2566677777777777777777777777777765
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.4e-08 Score=106.23 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..+..+...+...|++++|...|+++... +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAE 512 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444445555555555555555555444 2333445555555555555555555555555532 223444555555555
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRI 602 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 602 (665)
+.|++++ ++.|+++.+. .| +...|..+..+|.+.|++++|++.++++. ..|+ ...+..+..++..
T Consensus 513 ~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 5555555 5555555532 44 44455555555555555555555555554 2332 3344444444433
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.95 E-value=3.5e-09 Score=87.74 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=79.3
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.+.| +...+..+...+.+.|++++|...++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4566 56666677777888888888888887765 33467777788888888888888888888888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|++.++++++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888877653
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=4.6e-09 Score=98.45 Aligned_cols=193 Identities=8% Similarity=-0.069 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...|++.....| +...|..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556677788888889999888888877634 56678888888999999999999999988763 44667888888899
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
...|++++|...|++..+. .| +...+...+....+..+...... .......++......+.. + ..|+.++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 9999999999999988754 44 22222222222222222112122 222233334444333322 2 3789999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADA-GRWEDAFSIRKEMRDC 653 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 653 (665)
.++++++++|++......+..++.+. +.+++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999888888888777777 7799999999888663
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.88 E-value=1.9e-08 Score=85.98 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+..+...+...|++++|...|++..+. .| +..++..++.++...|++++|...+++.. .+.+...|..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34666677778888888888888888754 56 67788888888888999999999888875 33467888899999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI--YADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 652 (665)
+...|++++|...+++++++.|+++..+..++.+ +...|++++|.+.+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999998887554444 8888999999999988754
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=1.3e-08 Score=95.75 Aligned_cols=134 Identities=11% Similarity=0.015 Sum_probs=115.8
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTL 596 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 596 (665)
+.+...+..+...+...|++++|...|+++.+. .| +...+..++.++...|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 445567778888899999999999999999865 78 78899999999999999999999999987 44765544333
Q ss_pred H-HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 597 L-AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 597 ~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
. ..+...++.+.|+..++++++.+|+++..+..|+.+|...|++++|++.++++++...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 3 3367788889999999999999999999999999999999999999999999988654
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=7.3e-08 Score=91.14 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=119.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------HHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CCCC--h
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VEPD--L 558 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~ 558 (665)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|+..+++..+... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566677888888888888877765322 22 1233455566778899999999988874311 1111 4
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------ 623 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------ 623 (665)
.+++.++..|...|++++|...++++. ..|+ ..++..++.+|...|++++|+..+++++++.++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478889999999999999999998865 1122 2578889999999999999999999998765431
Q ss_pred CchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043580 624 GPSRVLLSNIYADAGRWEDA-FSIRKEMRD 652 (665)
Q Consensus 624 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 652 (665)
...+..+|.+|...|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45578899999999999999 787888765
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=6.5e-08 Score=92.11 Aligned_cols=220 Identities=8% Similarity=0.005 Sum_probs=157.3
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc-cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 043580 397 NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS-SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFE 475 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 475 (665)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887765321 11 111 46677777666553 456778899999988
Q ss_pred HHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHHHHHHHHHhcccChHHHHHH
Q 043580 476 VFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI---KLN--SITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 476 ~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
.|.+.... ..+ ..+|+.+...|...|++++|+..+++..+.-. .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88877654 111 23677888889999999999999988765311 121 3567888888988 99999999
Q ss_pred HHHHhHhhcCCC--C--ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 043580 544 YFKSMKSVYNVE--P--DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KAD----VVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 544 ~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.|++..+...-. + ...++..+..+|.+.|++++|+..++++.. .+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987542111 1 146788899999999999999999998751 122 2356677777888899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHhcCChhHHHH
Q 043580 612 AAKSLAGLQPSHGPS-----RVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 645 (665)
.+++++ +.|+.... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99987654 33445544 5677766665
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=5.6e-09 Score=90.43 Aligned_cols=124 Identities=10% Similarity=0.050 Sum_probs=68.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH-hhhcCCh-
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL-LGRAGQL- 574 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 574 (665)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34455666666666665543 334555666666666666666666666666543 34 45555555555 5555665
Q ss_pred -HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 575 -EDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 575 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
++|...++++. .+.+...+..+..++...|++++|...+++++++.|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 66666665554 2224555555666666666666666666666666666544
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=9.5e-08 Score=90.34 Aligned_cols=160 Identities=9% Similarity=-0.084 Sum_probs=119.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHH
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNI-KLNS----ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGC 563 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 563 (665)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888776421 1221 12334666677788999999999998863111223 236888
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-------MK-A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------GPSRV 628 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 628 (665)
++.+|...|++++|...++++. .. + ...++..++.+|.+.|++++|+..+++++++.+.. +..+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988875 11 1 23477889999999999999999999998776543 45688
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 043580 629 LLSNIYADAGR-WEDAFSIRKEMRD 652 (665)
Q Consensus 629 ~l~~~~~~~g~-~~~A~~~~~~~~~ 652 (665)
.+|.+|...|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999876
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=1.7e-06 Score=80.74 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=166.0
Q ss_pred CchHHHHHHHHHHHCCCCCChhH-HHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---C
Q 043580 399 QPNMALELFHGMVDAGVKPNEIT-MVSVFCAIASSG--TLKEGRWAHEYVLNNSITLNDNLSAAIIDMY----AKC---G 468 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 468 (665)
..++|+.+++.++. +.|+..| ++.--..+...+ +++++...++.++..+.+ +..+++.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 34567777777776 3454443 344444555555 777777777777665432 223333222222 333 7
Q ss_pred CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh------HH
Q 043580 469 SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDAN--LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL------VD 539 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~ 539 (665)
++++++.+++.+... +.+..+|+.-...+...|+++ ++++.++++++.. +-|...|+.-...+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 889999999998886 556778888888888888888 9999999999875 5577778776666666666 89
Q ss_pred HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 540 LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLED-AEEVIRSMPM-----KADVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
++++.++.+... .| |...|+.+..++.+.|+..+ +.++++++.. ..++..+..++.++.+.|+.++|+++
T Consensus 204 eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999854 88 89999999999988887555 5567777652 34788899999999999999999999
Q ss_pred HHHHhc-cCCCCCchHHHHHH
Q 043580 613 AKSLAG-LQPSHGPSRVLLSN 632 (665)
Q Consensus 613 ~~~~~~-~~p~~~~~~~~l~~ 632 (665)
++++.+ .+|-...++...+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999986 89988887766554
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.84 E-value=2e-08 Score=79.05 Aligned_cols=101 Identities=9% Similarity=-0.065 Sum_probs=89.4
Q ss_pred CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CCchHHH
Q 043580 555 EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS--HGPSRVL 629 (665)
Q Consensus 555 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~ 629 (665)
.| +...+..++..+...|++++|...++++. .+.+...|..+..++...|++++|...++++++..|+ +...+..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45 56778888899999999999999998875 3346788889999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCCC
Q 043580 630 LSNIYADA-GRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 630 l~~~~~~~-g~~~~A~~~~~~~~~~~~ 655 (665)
++.+|... |++++|++.++++.+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999999 999999999999987654
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=2.3e-08 Score=81.58 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|...|++..+ ..| +...+..++.+|...|++++|...++++. .+.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 344566667777777777777777777763 355 66777777777777788888887777765 334567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
.++...|++++|...++++++.+|++...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888877664
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.7e-08 Score=81.55 Aligned_cols=97 Identities=8% Similarity=-0.061 Sum_probs=67.8
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
...+..++..+.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455566666677777777777776654 23356667777777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 043580 636 DAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 636 ~~g~~~~A~~~~~~~~~~~ 654 (665)
..|++++|++.++++++..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 7777777777777776643
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=4.5e-08 Score=88.98 Aligned_cols=185 Identities=11% Similarity=-0.001 Sum_probs=136.8
Q ss_pred hcCCHHHHHHHHHHchhCCC-CcchHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCh---------------
Q 043580 466 KCGSINTAFEVFYHIRDRTT-SVSPWNAI-------ICGLAMHGDANLTLKIYSDLEKRNIKLNS--------------- 522 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--------------- 522 (665)
..++...|.+.|.++....| ....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888888888888887644 35577766 4555555555555555555444 22211
Q ss_pred -------HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCH----H
Q 043580 523 -------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADV----V 591 (665)
Q Consensus 523 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 591 (665)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2234456778889999999999999874 3573336667778889999999999999877644433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQ--PS-HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+..+..++...|++++|+..|+++..-. |. .+...+.++.++.++|+.++|...|+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67888899999999999999999997533 54 445688999999999999999999999988654
No 126
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=1.7e-08 Score=87.14 Aligned_cols=157 Identities=9% Similarity=-0.004 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-hcc
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST-CCH 534 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 534 (665)
...+...+...|++++|...|++.... +.+...+..+...+...|++++|+..+++..... |+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344566777888888888888887766 4456677888888888888888888888876643 344333222211 111
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhcCCHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD---VVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A 609 (665)
.+....|...+++..+. .| +...+..+..++...|++++|...++++. ..|+ ...+..++.++...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223467778777754 67 67888888888888899999988888765 3443 45788888888888888888
Q ss_pred HHHHHHHhc
Q 043580 610 ERAAKSLAG 618 (665)
Q Consensus 610 ~~~~~~~~~ 618 (665)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887753
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=2.7e-08 Score=82.53 Aligned_cols=101 Identities=7% Similarity=-0.064 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+.+.|++++|...|+++... .| ++..|..+..+|...|++++|+..|+++. .+.++..|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 3457778888899999999999999999954 78 78999999999999999999999999986 334678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.++...|++++|+..+++++++.|+.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999865
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.5e-08 Score=96.57 Aligned_cols=197 Identities=8% Similarity=-0.009 Sum_probs=151.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 043580 431 SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIY 510 (665)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 510 (665)
..|++++|.++++...+.... . .+...++++.|...|... ...|...|++++|...+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHH
Confidence 467888999999888654211 1 111257888888887654 45788899999999999
Q ss_pred HHHHHcCC---CC--ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCC--CC--ChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 511 SDLEKRNI---KL--NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNV--EP--DLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 511 ~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
.+..+... .+ -..+|..+...|...|++++|+..|++..+.+.- .| ...++..+..+|.. |++++|+..+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 88775421 11 1347888889999999999999999988754211 12 24578889999988 9999999999
Q ss_pred HhCCC------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCChhHHHHHH
Q 043580 582 RSMPM------KA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP------SRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 582 ~~~~~------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
++... .+ ...++..+...+...|++++|+..+++++++.|+... .+..++.++...|++++|++.+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88751 11 1467888999999999999999999999998776543 4667788888999999999999
Q ss_pred HHHH
Q 043580 648 KEMR 651 (665)
Q Consensus 648 ~~~~ 651 (665)
++++
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9997
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=3.9e-08 Score=79.90 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|...+++.... .| +...+..++.++...|++++|...+++.. .+.+...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 3456667777778888888888888888754 45 67778888888888888888888888775 334577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
.++...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999998999999999888763
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=2.5e-08 Score=96.07 Aligned_cols=127 Identities=10% Similarity=-0.058 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----------------hhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----------------LKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
..+..+...+.+.|++++|+..|++..+. .|+ ..+|..+..+|.+.|++++|+..++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555666666666666665533 342 4788889999999999999999999886
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA-FSIRKEMRD 652 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 652 (665)
.+.+...|..+..++...|++++|+..++++++++|++...+..++.++...|++++| .+.|++|.+
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888999999999999999999999999999999999999999999999999999 556776643
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=7.2e-09 Score=86.29 Aligned_cols=106 Identities=9% Similarity=-0.042 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|+..|+++... .| +...|..+..+|...|++++|+..++++. .+.++..+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4456777788888999999999999998854 67 78888999999999999999999999876 334678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.++...|++++|+..+++++++.|+++.....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 99999999999999999999999998875433
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=6.8e-08 Score=77.65 Aligned_cols=114 Identities=14% Similarity=0.201 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLA 598 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 598 (665)
...+..+...+...|++++|.++++++.+. .| +..++..++.++...|++++|...++++. .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 456666777777788888888888887754 45 56777778888888888888888887765 3346777888888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888999999999999999889988888888888776654
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=1.7e-07 Score=83.90 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
+..+...+...|++++|...|++... ++...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 44566777788888888888887764 667778888888888888888888888887764 446667777888888888
Q ss_pred hHHHHHHHHHHhHhhcC-------------CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 043580 537 LVDLGERYFKSMKSVYN-------------VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASR 601 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~ 601 (665)
++++|.+.|++..+... ..| ....+..++.+|...|++++|...++++. ..|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------- 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP----------- 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------
Confidence 88888888888775311 111 22677778888888888888888887764 33443
Q ss_pred hcCCHHHHHHHHHHHhccCC
Q 043580 602 IHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p 621 (665)
..+..+.|...+++.....|
T Consensus 155 ~~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 155 RHSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp GGGHHHHHHHHHHTTCCCCC
T ss_pred ccchHHHHHHHHHhcccccc
Confidence 22345556555555544433
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=5.9e-06 Score=83.68 Aligned_cols=373 Identities=11% Similarity=0.017 Sum_probs=208.5
Q ss_pred ccC-CHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCC-hhHHHHHHHH
Q 043580 202 VCS-SLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDGYLQVER-LSEALTMYRA 277 (665)
Q Consensus 202 ~~g-~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 277 (665)
+.| +++.|..+|+.+.+ .+-. |+++.+..+|++... |++..|..-+....+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 345 36666666665543 1111 889999999988775 777777777777666653 4556777877
Q ss_pred HHHC-CCCC-CHHHHHHHHHHhh----cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 043580 278 MLCD-GIAP-NDVMIVDLISACG----RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKD 351 (665)
Q Consensus 278 m~~~-g~~p-~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 351 (665)
.... |..| +...|...+..+. ..++.+.+..+|+..+.........++......-.. .+...+..++..
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~---- 148 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD---- 148 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH----
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH----
Confidence 7654 4333 5566666666554 246677888888888873222122222222221111 112222222211
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHhCC-C------chHHHHHHHHHHHCCCCCChh
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQ----KRDVYSWSAMISGYAQNE-Q------PNMALELFHGMVDAGVKPNEI 420 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~-~------~~~a~~~~~~m~~~~~~p~~~ 420 (665)
.. +.+..|..+++.+. ..+...|...+.--...+ . .+.+..+|+++.... +-+..
T Consensus 149 -----------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~ 214 (493)
T 2uy1_A 149 -----------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEE 214 (493)
T ss_dssp -----------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred -----------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHH
Confidence 00 11222222222211 112334444443322211 1 234567788877643 33455
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHchhC----------CCCcch
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTA-FEVFYHIRDR----------TTSVSP 489 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~----------~~~~~~ 489 (665)
.+...+.-+...|+.+.|..+++..... +.+...+.. |....+.++. ..+.+..... ......
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 6666666667788888888888888877 333332222 2221111111 1111111000 011234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc-cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH-AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL 567 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 567 (665)
|...+....+.++.+.|..+|++. ... ..+...|...+..-.. .++.+.|..+|+...+.+ | ++..+...++.
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~~~~~~~~yid~ 363 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CCCHHHHHHHHHH
Confidence 666667777778899999999988 321 2244444432222222 336899999999998763 4 45556667777
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 568 LGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
..+.|+.+.|..+++++. .....|...+.--...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999984 3567788888777788999999998888863
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=2.2e-08 Score=80.00 Aligned_cols=95 Identities=9% Similarity=-0.053 Sum_probs=83.8
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.+..++..+.+.|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567788889999999999999886 3347888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 043580 638 GRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 638 g~~~~A~~~~~~~~~~~ 654 (665)
|++++|++.++++++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=4.5e-07 Score=80.80 Aligned_cols=161 Identities=6% Similarity=-0.153 Sum_probs=117.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHG----DANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
++..+..+...|...+++++|...|++.... .++..+..|...|.. + ++++|+++|++..+.| +...+..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 3444555666666677777777777776664 345566666666666 5 7888888888887754 55667777
Q ss_pred HHHhcc----cChHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhHhhh----cCChHHHHHHHHhCCCC-CCHHHHHHH
Q 043580 529 LSTCCH----AGLVDLGERYFKSMKSVYNVEPD---LKHYGCMVDLLGR----AGQLEDAEEVIRSMPMK-ADVVIWGTL 596 (665)
Q Consensus 529 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~l 596 (665)
...|.. .+++++|.++|++..+. .|+ +..+..|..+|.. .+++++|...+++.... +++..+..|
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L 168 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA 168 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 777776 78899999999988743 443 6788888888887 78899999999887633 566677788
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHhccCC
Q 043580 597 LAASRIH-G-----NVEVGERAAKSLAGLQP 621 (665)
Q Consensus 597 ~~~~~~~-g-----~~~~A~~~~~~~~~~~p 621 (665)
...|... | +.++|...++++.+...
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8877653 3 89999999999887643
No 137
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=9.7e-07 Score=79.56 Aligned_cols=204 Identities=12% Similarity=-0.051 Sum_probs=114.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CC-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh--hHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVK-PN-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLND--NLSAAII 461 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 461 (665)
.+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++...|++++|...++.+.+....... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 4445556666677777777777777664211 11 134445555666666666666666666554322111 1222223
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHhcccChHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSI-TFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 540 (665)
.++...+.. . ...|..+...+...|++++|+..|+++++. .|+.. .......
T Consensus 86 ~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~---------- 138 (225)
T 2yhc_A 86 LTNMALDDS-----A----------LQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR---------- 138 (225)
T ss_dssp HHHHHHHC-----------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------
T ss_pred HHHHhhhhh-----h----------hhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------
Confidence 333222110 0 001112223334567889999999998875 44432 2221111
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
...+...+. .....++..|.+.|++++|+..++++. ..|+ ...+..+..++.+.|+.++|+..+++
T Consensus 139 l~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 139 LVFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 001111111 122356778889999999999999876 2243 25688889999999999999999999
Q ss_pred HhccCCCCCc
Q 043580 616 LAGLQPSHGP 625 (665)
Q Consensus 616 ~~~~~p~~~~ 625 (665)
+....|++..
T Consensus 210 l~~~~~~~~~ 219 (225)
T 2yhc_A 210 IAANSSNTLE 219 (225)
T ss_dssp HHHCCSCCCC
T ss_pred HHhhCCCchh
Confidence 9998888765
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=3.6e-09 Score=93.57 Aligned_cols=127 Identities=12% Similarity=-0.042 Sum_probs=90.9
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-C----------------hhHHHHHhhHhhhcCChHHHHHHHHhCC--
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-D----------------LKHYGCMVDLLGRAGQLEDAEEVIRSMP-- 585 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (665)
+..+...+...|++++|+..|++..+. .| + ..++..+..+|...|++++|+..++++.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDF---FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444555555555555555555532 22 2 2678888889999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhCC
Q 043580 586 MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF-SIRKEMRDCG 654 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 654 (665)
.+.+...+..+..++...|++++|+..++++++++|+++..+..++.++...++.+++. ..++.+...|
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33477889999999999999999999999999999999999999999999999988887 6666666554
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.73 E-value=3e-08 Score=79.97 Aligned_cols=95 Identities=5% Similarity=-0.091 Sum_probs=65.8
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-------hHHH
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP-------SRVL 629 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 629 (665)
..+..++..+.+.|++++|++.|+++. .+.+...|..+..+|...|++++|+..++++++++|+... ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345566777777777777777777664 2235666777777777777777777777777777776653 3556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+|.+|...|++++|++.|++.++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677777777777777777777653
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=4.4e-08 Score=83.44 Aligned_cols=109 Identities=12% Similarity=-0.008 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|+..|++..+. .| +...|..+..+|...|++++|+..++++. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4557788888889999999999999998854 67 78888899999999999999999998876 334688888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
.++...|++++|+..++++++++|+++..+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999886655543
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=8.5e-08 Score=78.72 Aligned_cols=97 Identities=7% Similarity=-0.042 Sum_probs=61.1
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..++..+...|++++|...++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 45555666666666666666666666553 2234556666666666666666666666666666666666666666666
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 043580 635 ADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~ 653 (665)
...|++++|.+.++++++.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666553
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1.8e-06 Score=81.56 Aligned_cols=160 Identities=11% Similarity=-0.005 Sum_probs=123.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSVS-------PWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIG 527 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 527 (665)
.+..+...|++++|...+++.....+... .+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999999887633222 2234566667778999999999999984322 22 236888
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhc----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------CCC-CHHHHH
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVY----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------MKA-DVVIWG 594 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~ 594 (665)
+...|...|++++|..+|+++.+.. +..+ ...++..++.+|.+.|++++|...+++.. ..+ -...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988522 1222 24578899999999999999999998875 112 267889
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhcc
Q 043580 595 TLLAASRIHG-NVEVGERAAKSLAGL 619 (665)
Q Consensus 595 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 619 (665)
.++.++.+.| ++++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 479999999999754
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=1.1e-07 Score=82.18 Aligned_cols=122 Identities=7% Similarity=0.040 Sum_probs=101.4
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCH-
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA-SRIHGNV- 606 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~- 606 (665)
+...|++++|...+++..+. .| +...+..++.+|...|++++|...++++. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678889999999988854 56 78889999999999999999999999876 33467788888888 7788998
Q ss_pred -HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 607 -EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 607 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
++|+..++++++.+|+++..+..++.+|...|++++|.+.++++++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999887554
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=2.7e-08 Score=82.26 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLA 598 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 598 (665)
...+..+...+...|++++|...|+++... .| +...|..+..+|...|++++|+..++++. .+.++..+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345666777888899999999999998854 67 78888889999999999999999998876 3346778888999
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
++...|++++|+..+++++++.|+++.......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999999999887655443
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=1.9e-07 Score=82.76 Aligned_cols=131 Identities=9% Similarity=-0.042 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCC-C---
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKA-D--- 589 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~--- 589 (665)
...+..+...+...|++++|...+++..... +..| ...++..+...|...|++++|...+++.. ..+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 3445555555555566666555555554311 1122 34455556666666666666666665543 111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 590 -VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 590 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+..+...+...|++++|...+++++++.+... ..+..++.++...|++++|.+.++++++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23455566666667777777777776664432211 1135667777777777777777776655
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=3.4e-06 Score=79.52 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc-C-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH------
Q 043580 469 SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH-G-DANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD------ 539 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~------ 539 (665)
.+++++++++.+... +.+..+|+.-...+... + +++++++.++++.+.. +-|...|+.-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 366666666666665 33445566555555554 5 6677777777777653 345566665555555545444
Q ss_pred --HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC-------hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH-
Q 043580 540 --LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ-------LEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNV- 606 (665)
Q Consensus 540 --~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~- 606 (665)
++++.++++.+. .| |...|+....++.+.++ ++++++.++++. .+-+...|+.+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 183 WGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 777777777754 56 67777777766666665 567777776664 333667777766666665542
Q ss_pred -------------------HHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 607 -------------------EVGERAAKSLAGLQ------PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 607 -------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
........++.... +..+.+...|+.+|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22333333333222 45566688999999999999999999999864
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=1.6e-07 Score=74.58 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+..+...+...|++++|...+++.... .| +...+..++.++...|++++|...++++. .+.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555555566666666666665533 34 45555555555555566666665555543 22244555555555
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
+...|++++|...++++++..|+++..+..++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555566666666666665555555555444443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=3.4e-07 Score=72.56 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=85.2
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
...+..++..+...|++++|...+++.. .+.+...+..+..++...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567778888899999999999998875 33477888888999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 043580 636 DAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 636 ~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|++++|.+.++++.+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999887654
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.4e-07 Score=76.00 Aligned_cols=110 Identities=9% Similarity=-0.101 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+......+.+.|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..++++. .+.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45666777788888899999988888854 66 67888888999999999999999888875 33467888889999
Q ss_pred HHhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQ------PSHGPSRVLLSNIYA 635 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 635 (665)
+...|++++|+..++++++++ |++......+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999 877777776665543
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=2.5e-07 Score=78.65 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=68.0
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..+...+...|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45566666777777777777777777664 2235666777777777777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~ 654 (665)
...|++++|++.|+++++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 77777777777777776643
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=2.3e-07 Score=74.44 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=89.6
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
...+..++..+...|++++|.+.++++. .+.+...+..+..++...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5778889999999999999999999986 33468889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 043580 636 DAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 636 ~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|++++|.+.++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987643
No 152
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=1.5e-05 Score=80.68 Aligned_cols=353 Identities=9% Similarity=-0.027 Sum_probs=209.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccc-hhhHHHHHHHHHHh-CCC-CchhHHHHHHHHHH----hcCCh
Q 043580 266 ERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMA-FGEGLQIHSIIVKA-GFD-CYDFIQATIIHFYA----ACGRI 338 (665)
Q Consensus 266 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~ 338 (665)
|+++.+..+|++.... .|+...|...+....+.++ .+....+|+..+.. |.. .+..++...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999873 5788888888877766653 45667778777764 433 35566666666544 24567
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHH---hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 043580 339 NLARLQFELGIKDHIASWNALIAGFI---RNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV 415 (665)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 415 (665)
+.+..+|++.+......+..+-..|. .......+..++... . +.+..|..+++.+...--
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~---------------~--~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT---------------L--PIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---------------H--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---------------h--HHHHHHHHHHHHHHHHHh
Confidence 77888887765422222222222221 111122222222211 1 123334444443332100
Q ss_pred CCChhHHHHHHHHHHcc--C-----cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc
Q 043580 416 KPNEITMVSVFCAIASS--G-----TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS 488 (665)
Q Consensus 416 ~p~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 488 (665)
..+...+...+.--... + ..+.+..+++.++... +.+..++...+..+.+.|+.+.|..++++.... |...
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 01222333333222111 1 1345667888887753 445677777888888999999999999999887 6544
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRN---------IKL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
.... .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+++ .. -.+
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~ 317 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGV 317 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCC
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCC
Confidence 3222 22222122222 22222210 011 1245666666666778899999999998 32 112
Q ss_pred ChhHHHHHhhHhhhcC-ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAG-QLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
+...|...+..-...+ +.+.|..+|+... .+.++..|...+.-..+.|+.+.|..+++++ +.....+......
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~f 393 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4455544443333334 6999999998875 3234566777777778899999999999998 3345556677766
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043580 634 YADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 634 ~~~~g~~~~A~~~~~~~~~ 652 (665)
-...|+.+.+.+++++.++
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6778999999999998875
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=8.6e-07 Score=83.73 Aligned_cols=163 Identities=10% Similarity=-0.015 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHH
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS-------PWNAIICGLAMHGDANLTLKIYSDLEKRNI---KLN--SIT 524 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~ 524 (665)
+...+..+...|++++|.+.+.......+... .+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34466778889999999999887776533221 233455667788899999999999876421 111 347
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHhhhcCChHHHHHHHHhCCC-----C--C-CHH
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLLGRAGQLEDAEEVIRSMPM-----K--A-DVV 591 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~--~-~~~ 591 (665)
++.+...|...|++++|..+++++.+.....|+ ..++..++.+|...|++++|...+++... . . -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888899999999999999999998742222332 25888899999999999999999988751 1 1 267
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 043580 592 IWGTLLAASRIHGNVEVG-ERAAKSLAGL 619 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 619 (665)
+|..++.++.+.|++++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788999999999999999 8889988753
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=1.5e-07 Score=76.73 Aligned_cols=99 Identities=8% Similarity=-0.011 Sum_probs=90.6
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..++..+...|++++|...++++. ..| +...+..+..++...|++++|+..++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 57788889999999999999999999975 334 7888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...|++++|.+.++++++...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999987643
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=1.3e-07 Score=77.34 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGL-------QPSHGPSR----VLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
..|..+..++.+.|++++|+..+++++++ +|++...| +.+|.++...|++++|++.|+++++.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888899999999999988888 99999999 99999999999999999999999774
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.6e-07 Score=76.05 Aligned_cols=106 Identities=9% Similarity=-0.061 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTL 596 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 596 (665)
..+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|...+++.. .+.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444445555555555555555554 22343 3444444444455555555555444433 11234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
..++...|++++|...++++++++|++...+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 44445555555555555555555554444444333
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=6.3e-07 Score=74.51 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=86.8
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
+...+..++..+...|++++|...+++.. ..|+ ...|..+..++...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 67788888999999999999999998875 4566 677888888899999999999999999999999988899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 043580 632 NIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+|...|++++|.+.++++++...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999887543
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=3.6e-07 Score=73.99 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=90.5
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..++..+...|++++|...++++. .+.+...+..+..++...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 56778889999999999999999999875 3347888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...|++++|.+.++++.+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988643
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=4.3e-07 Score=74.42 Aligned_cols=112 Identities=9% Similarity=-0.145 Sum_probs=89.6
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGT 595 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 595 (665)
+.+...+..+...+...|++++|...|++..+. .| +...+..++.++...|++++|...++++. .+.+...|..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 345677888888888889999999998888854 56 67888888999999999999999888875 3346788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC-----CCchHHHHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPS-----HGPSRVLLSNI 633 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~ 633 (665)
+..++...|++++|+..+++++++.|+ +......+..+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 44444444443
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=1.7e-06 Score=73.58 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 567 (665)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 35556666777777777777777777653 445667777777777788888888888877754 45 56777778888
Q ss_pred hhhcCChHHHHHHHHhCC--CCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhc
Q 043580 568 LGRAGQLEDAEEVIRSMP--MKADVVIWGTLL--AASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 618 (665)
+...|++++|...++++. .+.+...+..+. ..+...|++++|+..+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888887765 223444553333 336677888888888877643
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=6e-07 Score=90.47 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=77.9
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
..+|..+..+|.+.|++++|+..++++. .+.+...|..+..+|...|++++|+..++++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678889999999999999999998876 34478889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHH-HHHHHH
Q 043580 636 DAGRWEDAFS-IRKEMR 651 (665)
Q Consensus 636 ~~g~~~~A~~-~~~~~~ 651 (665)
..|++++|.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988774 455443
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=4.5e-07 Score=73.35 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-Ch---hHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C---HHHHHHHHH
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DL---KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D---VVIWGTLLA 598 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 598 (665)
+...+...|++++|...|+++.+. .| +. ..+..++.++...|++++|...++++. ..| + +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444555566666666666665543 33 22 345555555555666666665555543 112 2 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
++...|++++|...++++++..|+++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555566666666666655555555443
No 163
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.48 E-value=3.3e-07 Score=88.30 Aligned_cols=148 Identities=8% Similarity=-0.085 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHh
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLL 568 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (665)
.+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ..+|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3455555566666677777766666653 333221 222333333332211 13788899999
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH-HHhcCChhHHHH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI-YADAGRWEDAFS 645 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~ 645 (665)
.+.|++++|+..++++. .+.+...|..+..+|...|++++|+..++++++++|+++..+..|+.+ ....+..+++.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 334788999999999999999999999999999999999999999888 445578889999
Q ss_pred HHHHHHhCCCc
Q 043580 646 IRKEMRDCGMK 656 (665)
Q Consensus 646 ~~~~~~~~~~~ 656 (665)
.|+++......
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 99998776543
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=2.8e-07 Score=93.23 Aligned_cols=118 Identities=10% Similarity=0.065 Sum_probs=100.5
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g 604 (665)
+...+.+.|++++|++.+++..+. .| +...+..++.+|.+.|++++|++.++++. ..| +...|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344567789999999999999864 77 68899999999999999999999999876 334 6788999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhHHHHHHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNI--YADAGRWEDAFSIRK 648 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 648 (665)
++++|+..+++++++.|++...+..++.+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999888 889999999999997
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=1.2e-07 Score=75.33 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=43.7
Q ss_pred cChHHHHHHHHHHhHhhcCC-CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNV-EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
.|++++|+..|++..+. +. .| +...+..+..+|...|++++|+..++++. .+.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555521 10 23 34445555555555555555555555543 2223445555555555555555555
Q ss_pred HHHHHHhccCCCCCc
Q 043580 611 RAAKSLAGLQPSHGP 625 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~ 625 (665)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555555544
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=3.8e-07 Score=82.97 Aligned_cols=137 Identities=12% Similarity=-0.097 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDL 567 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 567 (665)
...+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 344667788889999999999888764 354445566666788899999999999866532 1121 3467788999
Q ss_pred hhhcCChHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 568 LGRAGQLEDAEEVIRSMPMK---A--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
+...|++++|+..|++.... | ....+.....++.+.|+.++|...|+++...+|+ +.....|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999988522 3 3457778888999999999999999999999998 66555553
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=9.3e-08 Score=84.37 Aligned_cols=123 Identities=7% Similarity=-0.109 Sum_probs=94.8
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C----------------H
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D----------------V 590 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~ 590 (665)
......|+++.+.+.++..... .+ ....+..+...+...|++++|+..++++. ..| + .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ----------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444556666666666544432 23 45667788999999999999999999875 222 2 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|++.++++++...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 78889999999999999999999999999999999999999999999999999999999987643
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.46 E-value=9.4e-05 Score=69.72 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=154.9
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhH-HHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-CH
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEIT-MVSVFCAIASSG-TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC-G-SI 470 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 470 (665)
.+.+..++|+++++++... .|+..| ++.--..+...+ .++++..+++.++.... -+..+++.-..++.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCCh
Confidence 3344556777777777763 444433 333334444455 47777777777776542 2334454444444444 5 77
Q ss_pred HHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh----
Q 043580 471 NTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDAN--------LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL---- 537 (665)
Q Consensus 471 ~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 537 (665)
++++++++++... +.+..+|+.-...+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 8888999888886 455667776665555555555 8999999999875 5577788888777777765
Q ss_pred ---HHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCCh--------------------HHHHHHHHhCCC-------
Q 043580 538 ---VDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQL--------------------EDAEEVIRSMPM------- 586 (665)
Q Consensus 538 ---~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~------- 586 (665)
++++++.++++... .| |...|+.+-..+.+.|+. .+..+...++..
T Consensus 221 ~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 78889999888854 78 788888877777766653 344455555542
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCCCCCchHHHHHH
Q 043580 587 -KADVVIWGTLLAASRIHGNVEVGERAAKSLA-GLQPSHGPSRVLLSN 632 (665)
Q Consensus 587 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 632 (665)
.+++..+..++..|...|+.++|.++++.+. +.+|-...++...+.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2577888899999999999999999999986 778876665555443
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=7.1e-07 Score=71.06 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=75.6
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 600 (665)
.+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|+..++++. ..| +...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445566777888888999888888854 67 78888888888889999999999888875 334 677888888889
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
...|++++|+..++++++++|++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999987653
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=2.8e-07 Score=78.20 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcC-----C----------CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN-----V----------EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
..+......+.+.|++++|+..|.+...... - .| +..+|..+..+|.+.|++++|+..++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4556666677777777777777777664200 0 12 23445555555555666666665555543
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.+.+...|..++.++...|++++|...++++++++|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 222455555555555566666666666666666655555
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=3.5e-06 Score=84.80 Aligned_cols=191 Identities=10% Similarity=-0.064 Sum_probs=132.8
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCc------------------chHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTSV------------------SPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLNS 522 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~ 522 (665)
..+.+.|++++|.+.|..+....++. .++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34455666777777666665542211 125667788888888888888887766421 11121
Q ss_pred ----HHHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------CC
Q 043580 523 ----ITFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------MK 587 (665)
Q Consensus 523 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 587 (665)
.+.+.+...+...|+++.|..+++...... +..+ ...++..++..|...|++++|..+++++. .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 133344445566788999998888775421 2333 35677889999999999999999988764 12
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 588 A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH-------GPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 588 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+ ....+..++..|...|++++|..+++++....+.. ...+..++..+...|++++|.+.+.++.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 24678888899999999999999999997654322 23366778888899999999999888865
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=4.2e-07 Score=73.62 Aligned_cols=96 Identities=7% Similarity=-0.001 Sum_probs=72.5
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH-------GPSRVL 629 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 629 (665)
..+..++..+...|++++|...++++. .+.+...+..+..++...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667777777777777777777764 33456777777777888888888888888888777765 666778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|.+.++++++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888888888887754
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=1.1e-06 Score=82.28 Aligned_cols=110 Identities=8% Similarity=-0.157 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 597 (665)
+...+..+...+...|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..++++. ..| +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566777778888888888888888888754 66 67788888888888888888888888865 334 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
.++...|++++|+..++++++++|+++..+..+++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 888888888888888888888888776544433333
No 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.42 E-value=7.7e-06 Score=84.20 Aligned_cols=171 Identities=8% Similarity=-0.057 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 468 GSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGD----------ANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
...++|.+.++.+....| +..+|+.--.++...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 344678888888888644 45577776666766666 899999999999875 557788888888888888
Q ss_pred --hHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-------
Q 043580 537 --LVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG-QLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIH------- 603 (665)
Q Consensus 537 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------- 603 (665)
+++++++.++++.+. .| |...|+.-..++.+.| .++++++.++++. ..| +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999965 78 8889998888888888 8999999999987 334 788898888887663
Q ss_pred -------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhH
Q 043580 604 -------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWED 642 (665)
Q Consensus 604 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 642 (665)
+.++++++.+++++.++|++..+|..++.++...+++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988665
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=4.4e-06 Score=73.78 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=48.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC----H
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD----V 590 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~ 590 (665)
.+..+...+...|++++|...+++..+.. +-.| ....+..+..++...|++++|...+++.. ..++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 44444555555555555555555544321 1111 13345555555555666666655555543 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.++..+..++...|++++|...+++++++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23455556666666666666666666544
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=1.2e-05 Score=75.56 Aligned_cols=186 Identities=8% Similarity=-0.007 Sum_probs=135.1
Q ss_pred hcCCH-HHHHHHHHHchhCCCC-cchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 466 KCGSI-NTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGD----------ANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 466 ~~~~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
+.|.+ ++|++.++.+....|+ ..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34444 4678888888776443 3455554333333332 567888888888764 557777777777776
Q ss_pred ccC--hHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC-hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc----
Q 043580 534 HAG--LVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ-LEDAEEVIRSMP--MKADVVIWGTLLAASRIH---- 603 (665)
Q Consensus 534 ~~~--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---- 603 (665)
..+ ++++++.+++++.+. .| |...|+.-..++...|. ++++++.++++. ..-+...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~---dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 666 478889999888854 77 78888887777777787 588888888876 334677787777776655
Q ss_pred ----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCC
Q 043580 604 ----------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA-----------GRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 604 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 655 (665)
+.++++++.+++++..+|++..++..+..++... +.++++++.++++++...
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 4578899999999999999999988777777766 457889999988887543
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=2.8e-05 Score=72.93 Aligned_cols=181 Identities=9% Similarity=0.015 Sum_probs=107.6
Q ss_pred HHHHHHHHHHchhC-CCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh-HHHHHHHH
Q 043580 470 INTAFEVFYHIRDR-TTSVSPWNAIICGLAMHG--DANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL-VDLGERYF 545 (665)
Q Consensus 470 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 545 (665)
++++..+++.+... +.+..+|+.-...+...+ ++++++..++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555554 344556665555555555 3567777777777654 4455666655555555565 46677777
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHhhhc--------------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-----
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLLGRA--------------GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH----- 603 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 603 (665)
+++.+. .| |...|+....++.+. +.++++++.++++. .+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 777643 55 566666555554443 34666777666664 333566666555554443
Q ss_pred ------CCHHHHHHHHHHHhccCCCCCchHHHHHHH---HHhcCChhHHHHHHHHHHhCC
Q 043580 604 ------GNVEVGERAAKSLAGLQPSHGPSRVLLSNI---YADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 604 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.++++++.+++++++.|++.-.+..++.+ ....|..++..+.+.++++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 346788888888888888774333333222 123567778888888877644
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=1.4e-06 Score=68.16 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DVVIWGT 595 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~ 595 (665)
+...+..+...+...|++++|...+++..+. .| +...+..++.++...|++++|...++++. ..| +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3445666677777778888888888877754 45 56777778888888888888888887765 223 4777888
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhccCCCCC
Q 043580 596 LLAASRIH-GNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 596 l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+..++... |++++|...++++++..|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888 888888888888888888765
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=8.7e-07 Score=86.24 Aligned_cols=93 Identities=8% Similarity=-0.041 Sum_probs=82.4
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
..| +..+|..+..+|.+.|++++|+..++++. ..| +...|..+..++...|++++|+..++++++++|++...+..|
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345 67889999999999999999999999876 334 678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHH
Q 043580 631 SNIYADAGRWEDAFSI 646 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~ 646 (665)
+.++...++.+++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988887654
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.37 E-value=4.2e-07 Score=77.05 Aligned_cols=96 Identities=8% Similarity=-0.004 Sum_probs=71.6
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-C------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-M------------------KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.+...+..+.+.|++++|+..|++.. . .| ....|..+..++.+.|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34556677778888888888877764 1 11 2356777777788888888888888888888
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 620 QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 620 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|+++..+..+|.+|...|++++|.+.|+++++...
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 888888888888888888888888888888776543
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=1.3e-06 Score=73.85 Aligned_cols=130 Identities=14% Similarity=0.035 Sum_probs=91.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC----HH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD----VV 591 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~ 591 (665)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666677777777777666543111111 2466677778888888888888877764 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------GPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+..+..++...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66777888889999999999999887654322 345778999999999999999999998763
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.36 E-value=2.1e-06 Score=69.02 Aligned_cols=96 Identities=5% Similarity=0.022 Sum_probs=67.5
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-C----CCC----HHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-M----KAD----VVIW 593 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~ 593 (665)
.+..+...+.+.|++++|+..|++..+. .| +...|..+..+|...|++++|++.+++.. . .++ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4555666677777777777777777643 56 56667777777777777777777776654 1 111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 594 GTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..++.++...|++++|+..++++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 67778888889999999999998887775
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=3.5e-07 Score=72.50 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=69.4
Q ss_pred hcCChHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH
Q 043580 570 RAGQLEDAEEVIRSMPMK----A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 644 (665)
..|++++|+..++++... | +...+..++.++...|++++|+..++++++++|+++..+..++.+|...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 467888999999887632 4 45678888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 043580 645 SIRKEMRDCG 654 (665)
Q Consensus 645 ~~~~~~~~~~ 654 (665)
+.++++++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887753
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=2.8e-06 Score=68.67 Aligned_cols=111 Identities=5% Similarity=-0.031 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-C----CCC----HHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-M----KAD----VVI 592 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~ 592 (665)
..+..+...+...|++++|...|++..+. .| +...+..++.+|...|++++|...++++. . .++ ...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34555666667777777777777777653 44 56667777777777777777777777764 1 122 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
+..+..++...|++++|...++++++..| ++.....++.+....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 77888888899999999999999998888 455566666554433
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=4.4e-06 Score=67.37 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=74.9
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---CchHHHHHH
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-V---VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH---GPSRVLLSN 632 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 632 (665)
+..++..+...|++++|...++++. ..|+ . ..+..++.++...|++++|+..++++++..|++ +..+..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3456677888889999988888875 2232 2 477778888888899999999999998888888 666888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 043580 633 IYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+|...|++++|++.++++++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999988887753
No 186
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=4.4e-06 Score=80.34 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDRTTSV----------------SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN 521 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 521 (665)
..+...|.+.|++++|...|++.....|+. ..|..+..++.+.|++++|+..+++.++.. +.+
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 229 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN 229 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 344444555555555555555544442222 344445555555555555555555555542 234
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
...+..+..+|...|++++|+..|+++.+. .| +...+..+..++...|++++|
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555532 44 444455555555555555544
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.5e-07 Score=72.53 Aligned_cols=93 Identities=10% Similarity=-0.025 Sum_probs=79.2
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------GPSRV 628 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 628 (665)
+...+..+...+...|++++|++.++++. .+.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667788888889999999999998875 33477889999999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 043580 629 LLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~ 649 (665)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999999988888776643
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.28 E-value=3.3e-06 Score=64.45 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.++..|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|++.++++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357778888888999999999999999999999999999999999999999999999999888764
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.23 E-value=6.5e-06 Score=67.14 Aligned_cols=113 Identities=8% Similarity=-0.077 Sum_probs=86.5
Q ss_pred cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGE 610 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 610 (665)
.+++++|.++|++..+. + .|+ .. |...|...+..++|.+.+++.....++..+..|...|.. .+|+++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35677788888877765 3 222 22 777777777777888888877655677778888888777 78888888
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043580 611 RAAKSLAGLQPSHGPSRVLLSNIYAD----AGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 655 (665)
..++++.+. .++.....|+.+|.. .+++++|.+.++++.+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888888776 567778888888888 8889999999988888764
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.21 E-value=6.5e-07 Score=72.96 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=57.0
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.+.+.+++|.+.+++..+. .| +...|..+..++...++++.+...++ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHH
Confidence 3455667777777776643 66 66677767666666665442222111 1456666
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCC
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAG-----------RWEDAFSIRKEMRDCG 654 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~ 654 (665)
.|+++++++|+...++..||.+|...| ++++|+++|+++++.+
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 666666666666666666666666553 5666666666665543
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=3.8e-06 Score=84.93 Aligned_cols=117 Identities=10% Similarity=0.018 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 540 (665)
..+.+.|++++|.+.+++..+..| +...|..+..++.+.|++++|++.+++..+.. +.+...+..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345556666666666666555422 34455555666666666666666666665542 2344555555555666666666
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhH--hhhcCChHHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDL--LGRAGQLEDAEEVIR 582 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 582 (665)
|.+.|+++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666665533 34 33444444444 455555555555555
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.20 E-value=2.5e-06 Score=85.47 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=93.3
Q ss_pred hcccChHHHHHHHHHHhHhhc--CC---CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVY--NV---EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVIWGT 595 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~--~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 595 (665)
+...|++++|..++++..+.. -+ .| ...+++.|+.+|...|++++|+.+++++. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777777665431 11 23 35678888888888999999988887764 2243 456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAG-----LQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
|...|...|++++|+.+++++++ +.|++|.+ ...|+.++.++|++++|...|+++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999864 57887765 4578888999999999999999998844
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=1.8e-06 Score=70.53 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=76.0
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-------------hhHHHHHhhHhhhcCChHHHHHHHHhCC-C----
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-------------LKHYGCMVDLLGRAGQLEDAEEVIRSMP-M---- 586 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---- 586 (665)
+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++.. .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 333444555566666666666666533 332 2378888888888888888888887765 4
Q ss_pred ---CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 587 ---KAD-VVIW----GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 587 ---~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
.|+ ...| .....++...|++++|+..|+++++++|++.....-+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 664 5678 8999999999999999999999999999988764444
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=4.1e-06 Score=65.99 Aligned_cols=79 Identities=14% Similarity=0.020 Sum_probs=41.0
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
|+..|++.. ...| +...+..++.+|...|++++|+..++++. .+.+...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455444 2344 45555555555555555555555555543 22234455555555555555555555555555
Q ss_pred ccCCC
Q 043580 618 GLQPS 622 (665)
Q Consensus 618 ~~~p~ 622 (665)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 55543
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.15 E-value=8.7e-06 Score=60.50 Aligned_cols=73 Identities=10% Similarity=-0.031 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCC
Q 043580 587 KADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPG 660 (665)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 660 (665)
++++..+..+..++...++ .++|..+++++++++|+++.....||..+.+.|++++|+..|+++++.... .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3577888888888765555 799999999999999999999999999999999999999999999987665 443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.13 E-value=7.4e-06 Score=61.09 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=62.7
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|...++++++++|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35566677777778888888888877764 2335677778888888888888888888888888888888888888877
Q ss_pred HhcC
Q 043580 635 ADAG 638 (665)
Q Consensus 635 ~~~g 638 (665)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=8.4e-06 Score=82.10 Aligned_cols=99 Identities=7% Similarity=-0.058 Sum_probs=79.9
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D---------------VVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
...+..+...|.+.|++++|+..|+++. ..| + ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4455556666666666666666666554 112 1 5788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 621 PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 621 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
|+++.+++.++.+|...|++++|++.|+++++....
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999887543
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=2.7e-05 Score=78.24 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=121.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNS----------------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD 557 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 557 (665)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999999886422111 23778899999999999999999998764333332
Q ss_pred h----hHHHHHhhHhhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----
Q 043580 558 L----KHYGCMVDLLGRAGQLEDAEEVIRSMP-------MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ----- 620 (665)
Q Consensus 558 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 620 (665)
. .+.+.+...+...|++++|..++++.. ..+ ...++..++..+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 234455566677899999999987764 222 35678889999999999999999999986432
Q ss_pred -CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 621 -PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 621 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|....++..++.+|...|++++|..++++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22234578899999999999999999999876
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=6.1e-06 Score=79.34 Aligned_cols=151 Identities=11% Similarity=-0.021 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
..+..+...+.+.|++++|...|++.....|+... +...++.+++...+. ...|..+..+|.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 34677888999999999999999998775343221 222333333332221 2367888888999
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAA-SRIHGNVEVGE 610 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~A~ 610 (665)
.|++++|+..+++..+. .| +...|..+..+|...|++++|...|+++. ..| +...+..+... ....+..+.+.
T Consensus 243 ~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999854 67 78889999999999999999999999986 445 44555555555 34456788899
Q ss_pred HHHHHHhccCCCCCc
Q 043580 611 RAAKSLAGLQPSHGP 625 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~ 625 (665)
..++++++..|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998765
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=6.3e-06 Score=80.13 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|++.|+++++...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4577889999999999999999999999999999999999999999999999999999999988643
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=5.9e-05 Score=77.64 Aligned_cols=151 Identities=12% Similarity=-0.018 Sum_probs=128.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh----------HHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL----------VDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
...++|++.+++++..+ +-+...|+.-...+...|+ ++++++.++.+.+. .| +..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 34578899999999964 4456677776666666666 89999999999965 78 8889999888898
Q ss_pred hcC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-------
Q 043580 570 RAG--QLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG-NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA------- 637 (665)
Q Consensus 570 ~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 637 (665)
+.| +++++++.++++. ..-+...|+.-..++.+.| .++++++.++++++.+|++..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 7799999999987 4457889999999999999 899999999999999999999999999998875
Q ss_pred -------CChhHHHHHHHHHHhCCC
Q 043580 638 -------GRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 638 -------g~~~~A~~~~~~~~~~~~ 655 (665)
+++++|++++++++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567999999999987644
No 202
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=7.7e-06 Score=68.97 Aligned_cols=132 Identities=9% Similarity=-0.031 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKH 560 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~ 560 (665)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+...-.+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555444432100 11 13555666666677777777777776654311111 1445
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP----MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
+..+..++...|++++|...+++.. ... ....+..+...+...|++++|...+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6667777778888888888777654 111 234567777888888999999999988876543
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.03 E-value=6.6e-06 Score=67.04 Aligned_cols=124 Identities=11% Similarity=0.001 Sum_probs=89.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChH----------HHHHHHHHHhHhhcCCCC-ChhHHHHHh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLV----------DLGERYFKSMKSVYNVEP-DLKHYGCMV 565 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 565 (665)
..+.+.+++|.+.+++..+.. +.+...|..+..++...+++ ++|+..|++..+ +.| +...|..+.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 346678899999999999975 55888898888888888765 588888888874 477 677888888
Q ss_pred hHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
.+|...|.+ .|+.. ...|++++|+..|+++++++|++..+...+- ..++|.+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 888776653 34331 1137899999999999999999865433332 2344555
Q ss_pred HHHHHHh
Q 043580 646 IRKEMRD 652 (665)
Q Consensus 646 ~~~~~~~ 652 (665)
+.-++..
T Consensus 140 l~~~~~~ 146 (158)
T 1zu2_A 140 LHAEAYK 146 (158)
T ss_dssp HHHHHHH
T ss_pred ccCcccc
Confidence 5544443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=2e-05 Score=61.39 Aligned_cols=68 Identities=9% Similarity=-0.050 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|++.++++++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678889999999999999999999999999999999999999999999999999999999886543
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=4e-05 Score=60.16 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 576 DAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 576 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+|+..++++. ..| +...+..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|++.++++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555565553 233 67778888888888888888888888888888888888888888888888888888888887664
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00015 Score=58.87 Aligned_cols=111 Identities=10% Similarity=-0.063 Sum_probs=93.1
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCChHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQLED 576 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 576 (665)
+++++|+++|++..+.| .|+.. +...|...+..++|.++|++..+. -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 44444 777777778888899999998864 467788888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccC
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (665)
|.+.+++.....++..+..|...|.. .+|.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998766788889999999988 899999999999998864
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=5.8e-05 Score=56.05 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+...+..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.++++++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567888889999999999999999999999999999999999999999999999999999988643
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.73 E-value=4.6e-05 Score=57.78 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=58.9
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKA-DVV-IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 640 (665)
.+..+...|++++|...++++. ..| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4566778888888888888875 233 566 78888888888999999999999999999988876532 455
Q ss_pred hHHHHHHHHH
Q 043580 641 EDAFSIRKEM 650 (665)
Q Consensus 641 ~~A~~~~~~~ 650 (665)
.+|...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 6666666443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=0.00016 Score=68.03 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.++.+|..+...+...|+++.|...+++++.++|+ ...+..+|+++.-.|++++|.+.++++...+.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45566666655556667777777777777777654 34456667777777777777777777766544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.63 E-value=5.4e-05 Score=57.40 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGP-SRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
..+..+...|++++|+..++++++.+|+++. .+..+|.+|...|++++|++.++++++....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3566788999999999999999999999999 9999999999999999999999999886543
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=7.3e-05 Score=56.79 Aligned_cols=68 Identities=7% Similarity=-0.114 Sum_probs=49.5
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+...+..++.+|...|++++|+..++++. .+.+...|..+..++...|++++|+..+++++++.|+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 56677777777777888888888777765 223566777777788888888888888888877665443
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.52 E-value=9e-06 Score=77.54 Aligned_cols=224 Identities=9% Similarity=0.078 Sum_probs=132.0
Q ss_pred CcchhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhc
Q 043580 88 DPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVH 167 (665)
Q Consensus 88 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 167 (665)
.+..|..|.++..+.++..+|++-| ++..|+..|..++....+.|.+++-++.+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4667889999999999888887655 334567789999999999999999999888877653333 333456666776
Q ss_pred cCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhC
Q 043580 168 LGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERI 247 (665)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (665)
.+++.+.++++ -.|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|+++.|.+.-++.
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66654332221 123333334455555555555555555544432 222222334444444444332221
Q ss_pred CCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHH
Q 043580 248 PSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQAT 327 (665)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (665)
.++.||-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++.+.+++.-.... .....+++.
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 3567788888888888887776555444432 222 11235556667777777776666554211 234455566
Q ss_pred HHHHHHhc
Q 043580 328 IIHFYAAC 335 (665)
Q Consensus 328 l~~~~~~~ 335 (665)
+.-.|++-
T Consensus 269 LaILYsKY 276 (624)
T 3lvg_A 269 LAILYSKF 276 (624)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHhc
Confidence 65555554
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.50 E-value=0.00019 Score=70.68 Aligned_cols=62 Identities=6% Similarity=-0.071 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAG-----LQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+++.|..+|...|++++|+.+++++++ +.|+++ ..+..||.+|..+|++++|..+++++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4566666667777777777777776653 345554 3477888888888888888888888866
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.00022 Score=71.55 Aligned_cols=122 Identities=8% Similarity=-0.104 Sum_probs=81.2
Q ss_pred HHhcCChHHHHHHHHHHHHcC---CCCC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhc----C-CCC-ChhHHHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRN---IKLN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVY----N-VEP-DLKHYGC 563 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~ 563 (665)
+...|++++|+.++++.++.. +.|+ ..+++.+...|...|++++|..++++...-+ | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445566666666666554321 1221 2467777778888888888887777765421 2 234 3566888
Q ss_pred HhhHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
|+..|...|++++|+.+++++. ..|+ ..+...+..++...|.+++|+.+|+++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999988888764 2232 23445566667788889999999988865
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.0029 Score=59.57 Aligned_cols=138 Identities=8% Similarity=-0.011 Sum_probs=91.4
Q ss_pred CCcchHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcc--------cChHHHHHHHHHHhHh
Q 043580 485 TSVSPWNAIICGLA--MHG---DANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCH--------AGLVDLGERYFKSMKS 550 (665)
Q Consensus 485 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~ 550 (665)
.+...|...+.+.. ..+ +..+|..+|++.++. .|+ ...|..+..+|.. ..........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45556666665533 222 246677777777774 454 3344433333321 0011111122222221
Q ss_pred hcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 551 VYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 551 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
. ...| ++.+|..+...+...|++++|...++++. ..|+...|..+...+...|+.++|.+.+++++.++|..++
T Consensus 270 ~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 270 L-PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp C-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred c-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 1 2334 78889888888888899999999999986 5588888888889999999999999999999999998865
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.46 E-value=0.009 Score=45.88 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
+.-.|..++..++..+... ..+..-+|-++--....-+-+-..+.++.+-+-|.+.+-. ....++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcc---
Confidence 3456888888888888876 3355556666665555666666777777776554444411 11233445544433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+....+..+..+...|.-++-..++..++..+|-++.....++.+|.+.|+..+|.++++++-++|++
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34455566778889999999999999987777778888999999999999999999999999999985
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.35 E-value=0.00041 Score=68.43 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=50.6
Q ss_pred hhhcCChHHHHHHHHhCC------CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCCc---hHHH
Q 043580 568 LGRAGQLEDAEEVIRSMP------MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAG-----LQPSHGP---SRVL 629 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~------~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~ 629 (665)
+.+.|++++|+.++++.. ..| ...+++.++.+|...|++++|+.+++++++ +.|++|. .+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334555566655555432 111 134556666666666666666666666643 2344443 3667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|+.+|..+|++++|..+++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777777765
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.23 E-value=0.00017 Score=69.07 Aligned_cols=211 Identities=10% Similarity=0.083 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGY 99 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~ 99 (665)
.-|...|..++.++.+.|.+++-.+++....+. .-++.+=+.|+-+|++.++..+.++++. .||......+..-+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 345567899999999999999999988876665 3455666789999999999877554433 36666677788888
Q ss_pred HhcCChhhHHHhhhcCC------------------------CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCH
Q 043580 100 IRNDRLNDAREVFDKTP------------------------IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNE 155 (665)
Q Consensus 100 ~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 155 (665)
-..|.++.|.-+|..+. ..++.+|..+-.+|...+.+.-|.-+--.+.- .||
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH-
Confidence 88888888888877653 13456777777777777776666555444442 111
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC----C-------CcccH
Q 043580 156 VTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----R-------NIVSW 224 (665)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~ 224 (665)
-...++..|-..|.+++-..+++..... -.....+++.|.-.|++- ++++..+.++..-. | +...|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 1223445556666666666666554421 134566777777767665 34444444444332 1 23356
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 043580 225 NVMLNGFAKAGLVELARE 242 (665)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~ 242 (665)
.-++-.|.+-..++.|..
T Consensus 308 ~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcchhHHHHHH
Confidence 666666666666665543
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.00063 Score=54.73 Aligned_cols=93 Identities=12% Similarity=-0.015 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG---QLEDAEEVIRSMP-MK-A--DVVIWGTLLAASRIHGNVE 607 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~ 607 (665)
.+....+.+.|.+..+. + .++..+...+..++.+.+ +.++++.++++.. .. | ..+.+..+.-++.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34566677777766553 2 257888888888888887 6668888888875 22 4 3667778888889999999
Q ss_pred HHHHHHHHHhccCCCCCchHHH
Q 043580 608 VGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
+|.++++++++.+|++..+...
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999988775443
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.11 E-value=0.0015 Score=58.74 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhc-CChhHH
Q 043580 575 EDAEEVIRSMP-MKAD---VVIWGTLLAASRI-----HGNVEVGERAAKSLAGLQPSH-GPSRVLLSNIYADA-GRWEDA 643 (665)
Q Consensus 575 ~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 643 (665)
..|...++++. ..|+ ...|..++..|.+ -|+.++|...|+++++++|+. ...++.++..++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 44444444443 3343 3455555555555 377777777777777777764 67777777777664 777777
Q ss_pred HHHHHHHHhCCCccCCC
Q 043580 644 FSIRKEMRDCGMKRLPG 660 (665)
Q Consensus 644 ~~~~~~~~~~~~~~~~~ 660 (665)
.+++++++.......|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77777777766554344
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0017 Score=63.98 Aligned_cols=93 Identities=13% Similarity=-0.062 Sum_probs=68.5
Q ss_pred cChHHHHHHHHHHhHhhc--CCCC----ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVY--NVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVIWGTLLA 598 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~ 598 (665)
.|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++. ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467788888777765421 1223 24678888888999999999998888864 2243 456888999
Q ss_pred HHHhcCCHHHHHHHHHHHhc-----cCCCCCchH
Q 043580 599 ASRIHGNVEVGERAAKSLAG-----LQPSHGPSR 627 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 627 (665)
.|...|++++|+.+++++++ +.|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999964 467777643
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.0026 Score=48.38 Aligned_cols=75 Identities=15% Similarity=0.060 Sum_probs=55.4
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
+..-+..|+..+.+.|+++.|...++.+. ..+....+..|..++.+.|+++.|...+++++++.|+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444556666667777777777666653 113467788999999999999999999999999999998765
Q ss_pred HHHH
Q 043580 628 VLLS 631 (665)
Q Consensus 628 ~~l~ 631 (665)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.93 E-value=0.0072 Score=44.54 Aligned_cols=74 Identities=7% Similarity=-0.054 Sum_probs=56.9
Q ss_pred ChhHHHHHhhHhhhcCC---hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
|+..+..+..++...++ .++|..++++.. .+.++..+..++..+...|++++|+..++++++.+|. ......+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 67778888887765544 688998888876 3346777888888899999999999999999999998 44344443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.87 E-value=0.0032 Score=50.68 Aligned_cols=67 Identities=7% Similarity=-0.096 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 588 ADVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQ-P-SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++..+...+.+++.+++ ++++++.+++.+++.+ | ++..+++.|+-+|.+.|++++|+++++.+++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56666666666666666 4556666666666665 5 345556666666666677777776666666543
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.0033 Score=61.99 Aligned_cols=100 Identities=12% Similarity=-0.065 Sum_probs=74.3
Q ss_pred HHHhcccChHHHHHHHHHHhHhhc--CCCC----ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCC-HHH
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVY--NVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVI 592 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~ 592 (665)
+..+.+.|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888876431 1233 24568888889999999999999988764 2243 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCCchHH
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAG-----LQPSHGPSRV 628 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 628 (665)
++.|...|...|++++|+.+++++++ +.|++|.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88899999999999999999999964 5788876543
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.68 E-value=0.0047 Score=46.90 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ-------PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+..-...++..+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..+++++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556688899999999999999999998753 2334568899999999999999999999998754
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.51 E-value=0.06 Score=58.69 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 043580 465 AKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLE 514 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 514 (665)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3345555555544332 233455555555555555555555555543
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.32 E-value=1.2 Score=45.83 Aligned_cols=329 Identities=10% Similarity=-0.032 Sum_probs=159.8
Q ss_pred HhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHH
Q 043580 262 YLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA-GFDCYDFIQATIIHFYAACGRINL 340 (665)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 340 (665)
..+.|++..+..+...+...-+. .-..|..+...+. ....+ ++...+.+. +.+.....-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 34567777777766655432221 2223433333221 11223 333333333 222233444555666666777776
Q ss_pred HHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh
Q 043580 341 ARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI 420 (665)
Q Consensus 341 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 420 (665)
...++.. .+.+...-.....+....|+..+|......+=.. ....++.+-.+|..+.+.|......
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------------CCCCcHHHHHHHHHHHHCCCCCHHH
Confidence 6665544 3334444444556666667655554433332100 0011233333444444333221111
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcch---HHHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN-LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSP---WNAIICG 496 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~l~~~ 496 (665)
.+ .-+......|+...+..+... ++++.. ....++..+.. ...+....... +++... +..-+.-
T Consensus 157 ~~-~R~~~al~~~~~~~a~~l~~~-----l~~~~~~~a~~~~al~~~---p~~~~~~~~~~---~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 157 YL-ERIRLAMKAGNTGLVTVLAGQ-----MPADYQTIASAIISLANN---PNTVLTFARTT---GATDFTRQMAAVAFAS 224 (618)
T ss_dssp HH-HHHHHHHHTTCHHHHHHHHHT-----CCGGGHHHHHHHHHHHHC---GGGHHHHHHHS---CCCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHCCCHHHHHHHHHh-----CCHHHHHHHHHHHHHHhC---hHhHHHHHhcc---CCChhhHHHHHHHHHH
Confidence 11 112233334444444433322 222221 22223332222 22222222221 122221 1112222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH----HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSI----TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG 572 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (665)
+. ..+++.|...+....... ..+.. ....+.......+...++...+...... .++.......+....+.|
T Consensus 225 la-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 225 VA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHT
T ss_pred HH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCC
Confidence 23 348899999998887654 23332 3334444555556345666666665432 344444445555556789
Q ss_pred ChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 573 QLEDAEEVIRSMPMKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 573 ~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+++.|...|+.+...+ ......-+..++...|+.++|..+|+++.+ + ..+|-.|
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 9999999999997542 344455677778889999999999999975 2 2445555
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.05 E-value=0.083 Score=40.77 Aligned_cols=92 Identities=14% Similarity=-0.016 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED---AEEVIRSMPMK--A--DVVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~ 608 (665)
.....+.+-|...... +. |+..+-..++.++.+..+... ++.+++++... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555555443 32 666777777778887776655 77788776533 3 34556677778999999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 043580 609 GERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~~~~~ 629 (665)
|..+++.+++.+|++..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999998775443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.99 E-value=0.0073 Score=54.33 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhHhhh-----cCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHh-cC
Q 043580 537 LVDLGERYFKSMKSVYNVEPD---LKHYGCMVDLLGR-----AGQLEDAEEVIRSMP-MKA--DVVIWGTLLAASRI-HG 604 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~g 604 (665)
....|...+++..+ +.|+ ...|..|...|.. .|+.++|.+.|++.. ..| +..++......++. .|
T Consensus 178 ~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777774 4775 5578888888888 489999999999886 555 36777777777777 48
Q ss_pred CHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 605 NVEVGERAAKSLAGLQPSH-GPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+.+.+.+.+++++...|.. |. +.+...+.-++|..++.++-+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999988885 33 123334455677777765543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.44 Score=39.37 Aligned_cols=101 Identities=9% Similarity=0.087 Sum_probs=48.4
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 364 IRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
...|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+...++-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 3445555555555544 2445566666666666666666666654432 2233333334444444333333
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
.....| -++.....+...|+++++.++|.+..
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 332222 12333344445566666666554443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.83 E-value=0.015 Score=44.80 Aligned_cols=81 Identities=9% Similarity=-0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 575 EDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEV---GERAAKSLAGLQ-P-SHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 575 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
..+.+-+.+.. ..++..+--.+.+++.++.+... ++.+++.+.... | ..-...+.|+-.+.+.|+|++|+++.
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444332 34888888899999999887655 999999988876 5 45566889999999999999999999
Q ss_pred HHHHhCCC
Q 043580 648 KEMRDCGM 655 (665)
Q Consensus 648 ~~~~~~~~ 655 (665)
+.+++...
T Consensus 98 ~~lL~~eP 105 (126)
T 1nzn_A 98 RGLLQTEP 105 (126)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 99988544
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.80 E-value=0.45 Score=36.75 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
-+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334444444444444444443322 2444444444445555555555555544444443
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.64 Score=50.51 Aligned_cols=131 Identities=16% Similarity=0.110 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHH
Q 043580 326 ATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALE 405 (665)
Q Consensus 326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 405 (665)
..++..+.+.|..+.|.++.+. | ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555555555544321 0 111233456677777777766553 45677777777788888888887
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 406 LFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 406 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
.|.++.. |..+...+...++.+...++.+.....|. ++....+|.+.|++++|.+++.++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7776533 33344444445555554444444433321 2333444556677777766655443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.68 E-value=0.035 Score=43.90 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHhcccChH------HHHHHHHHHhHhhcCCCCCh-hHHHHHhhH------hhhcCChHHHHHHHHhCC
Q 043580 519 KLNSITFIGVLSTCCHAGLV------DLGERYFKSMKSVYNVEPDL-KHYGCMVDL------LGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~ 585 (665)
+-|..+|-..+....+.|++ ++..++|++... .++|+. ..+...+.. +...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34677888888888878888 888888888876 455542 122222222 123478888888887774
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 586 --MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 586 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
.+.-...|.....--.+.|++..|..++.+++++.|.......
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 2223566655555566888888888888888888887665443
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.35 E-value=0.16 Score=39.86 Aligned_cols=72 Identities=7% Similarity=-0.048 Sum_probs=45.2
Q ss_pred CCChhHHHHHhhHhhhcCCh---HHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 555 EPDLKHYGCMVDLLGRAGQL---EDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.|+..+--.++.++.++.+. .+++.+++++. ..| .......|.-++.+.|++++|.++.+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45666666666666666543 35666666654 223 34455556666777777777777777777777777654
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.054 Score=56.66 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=48.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.-|...|+++.|+.+.++++..-|++-.+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44667899999999999999999999999999999999999999999888776
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.02 E-value=2.2 Score=39.52 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCChHHHHHHHHH
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLK----IYSDLEKRNIKLNSITFIGVLST 531 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~ 531 (665)
+|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.. +++-..+.++++|......++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345566678888888888887644322 3444555544433 34555667778888877777777
Q ss_pred hcccChHH-HHHHHHHHhHh---hcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043580 532 CCHAGLVD-LGERYFKSMKS---VYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGN 605 (665)
Q Consensus 532 ~~~~~~~~-~a~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 605 (665)
+.....-+ .=..+.+++.+ .+|-.| ++.....+...|.+.+++.+|...|= ....+++..+..++.-+...+.
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC
Confidence 76544311 11222222221 124334 88899999999999999999998883 2233444677666655444432
Q ss_pred HHHHHHHHHHHhccCCCCCchHH-HHHHHHHhcCChhHHHHHHHHHHh
Q 043580 606 VEVGERAAKSLAGLQPSHGPSRV-LLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|.....+. ..+--|.-.++...|..+++...+
T Consensus 183 ---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 333347888999999987766654
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.00 E-value=0.073 Score=41.20 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=48.2
Q ss_pred CCChhHHHHHhhHhhhcCCh---HHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 555 EPDLKHYGCMVDLLGRAGQL---EDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.|++.+--.++.++.+..+. .+++.+++++. ..| ....+..|.-++.+.|++++|.++.+.+++.+|++..+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 35566666666677666543 45666666654 223 355666677778888888888888888888888876643
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.75 E-value=0.091 Score=41.57 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCcchHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChH-HHHHHHHHhc------ccChHHHHHHHHHHhHhh
Q 043580 485 TSVSPWNAIICGLAMHGDA------NLTLKIYSDLEKRNIKLNSI-TFIGVLSTCC------HAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~------~~~~~~~a~~~~~~~~~~ 551 (665)
.|+.+|-..+...-+.|++ ++..++|++.... ++|+.. .+...+..+. ..++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666776 6666677766664 355432 2222222221 135666667777766553
Q ss_pred cCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 552 YNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
.-.. ...|-..+..-.+.|+.+.|.+++.+..
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 2222 4555555555566777777777776654
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.61 E-value=6 Score=42.54 Aligned_cols=256 Identities=10% Similarity=0.036 Sum_probs=129.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC----Ccc--hHHHHHHHHHhCCCchHHHHHHHHHHHCCC-------CCChhHHHHHH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKR----DVY--SWSAMISGYAQNEQPNMALELFHGMVDAGV-------KPNEITMVSVF 426 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll 426 (665)
.-+....|+.+++..+++..... +.. .-..+.-+....|..+++.+++.......- .+....-..+-
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34566778888888888776542 222 222333444555655567777766554321 01111112222
Q ss_pred HHHHccCc-HHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCCh
Q 043580 427 CAIASSGT-LKEGRWAHEYVLNNSITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDA 503 (665)
Q Consensus 427 ~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 503 (665)
-++...|. -+++...+..+....-.. ....-.++...+.-.|+.+....++..+.+...+ +.-...+.-++...|+.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 23333332 234444454444322110 0111223444555667777777777766654222 22233344455577888
Q ss_pred HHHHHHHHHHHHcCCCCChHH--HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 504 NLTLKIYSDLEKRNIKLNSIT--FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
+.+..+++.+.... .|.... -..+.-+|+..|+.....+++..+.+. ...++.-...+.-++...|+.+.+..++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888877631 222221 123345677788877777788887753 2223333334444444566666666666
Q ss_pred HhCCCCCCHHHHHHHHHHH--HhcCC-HHHHHHHHHHHhc
Q 043580 582 RSMPMKADVVIWGTLLAAS--RIHGN-VEVGERAAKSLAG 618 (665)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~--~~~g~-~~~A~~~~~~~~~ 618 (665)
+.+....++.+-.....++ ...|+ ..+++..+.++..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6554333444433333332 23333 2566667776653
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.52 E-value=1.7 Score=35.90 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 344556666666665544 3345566666666666666666666655443 233333444455555544
Q ss_pred HHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043580 543 RYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSL 616 (665)
Q Consensus 543 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (665)
++-+..... | -++.-..++.-.|+++++.+++.+...-|... ......|-.+.|.++.+++
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 443333322 1 13333344555666666666666654322111 1122355566666666555
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.05 E-value=0.13 Score=41.73 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=58.1
Q ss_pred CCCCChH--HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCCh-------hHHHHHhhHhhhcCChHHHHHHHHhCC--
Q 043580 517 NIKLNSI--TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDL-------KHYGCMVDLLGRAGQLEDAEEVIRSMP-- 585 (665)
Q Consensus 517 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (665)
|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|+++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444333 23333455556666676666666655432223331 244455666666666666666666542
Q ss_pred ----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 586 ----M-KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 586 ----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
. .++..+ .+. ..... ..-.. .+.+....+.++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~--~~~----~~ss~-------p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRP--STG----NSAST-------PQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccc--ccc----ccCCC-------ccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 111100 000 00000 00001 1223356788999999999999999998764
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.09 E-value=11 Score=40.49 Aligned_cols=267 Identities=10% Similarity=0.020 Sum_probs=144.6
Q ss_pred HHHHHHhcCChHHHHHHHHhccC----Cc--hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-CC----------cchHHHH
Q 043580 328 IIHFYAACGRINLARLQFELGIK----DH--IASWNALIAGFIRNGMIEDARQLFNNMQK-RD----------VYSWSAM 390 (665)
Q Consensus 328 l~~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l 390 (665)
..-+....|+.+.+...++.-+. .+ ...-..+.-+....|..+++..++..... .+ ...-..+
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 33445667777778877776554 12 22223344456666666667666655432 12 1112233
Q ss_pred HHHHHhCCC-chHHHHHHHHHHHCCCCCChhHHH--HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHH--HHHHHHH
Q 043580 391 ISGYAQNEQ-PNMALELFHGMVDAGVKPNEITMV--SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSA--AIIDMYA 465 (665)
Q Consensus 391 ~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 465 (665)
.-+++-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+.. .+.-++.
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 334443443 2466677766665321 1111122 22233456677777777777776532 222332 3333444
Q ss_pred hcCCHHHHHHHHHHchhCCCCcchHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 466 KCGSINTAFEVFYHIRDRTTSVSPWN---AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
..|+.+.+..+++.+........-|. ++..+|+..|+......+++.+.+.. ..+......+.-++...|+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 67888888888887776422222233 34456778889887777888888742 222222333333444456666666
Q ss_pred HHHHHhHhhcCCCCChhHHHHHhhHhhhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043580 543 RYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL-EDAEEVIRSMPMKADVVIWGTLLAASR 601 (665)
Q Consensus 543 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~ 601 (665)
++++.+.+. ..|.+..-..++-+....|.. .+|++++..+...++..+-..-+.++.
T Consensus 615 rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 776665542 345444444444444445543 678888888876677666555554444
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.78 E-value=1.2 Score=43.88 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC---CC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCC----
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP---MK-AD----VVIWGTLLAASRIHGNVEVGERAAKSLAG---LQPSHG---- 624 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~---- 624 (665)
....|+..|...|++.+|..++..+. .. .+ ...+...+..|...+|+.+|..+++++.. -.+.++
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34567888888899999998888865 11 11 34556667778888999999999888732 122222
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.++...|..+...++|.+|-+.|.++.+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3466788888888999999888887754
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.23 E-value=1.8 Score=34.02 Aligned_cols=82 Identities=11% Similarity=-0.058 Sum_probs=58.4
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 574 LEDAEEVIRSM-PMKADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPS-HGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 574 ~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
+....+-+.+- ...|+..+--.+.+++.++.+ ..+++.+++.+....|. .-...+.|+-.+.+.|+|++|+++.+
T Consensus 22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444332 335778887888888888775 45788888888877774 44557788888889999999998888
Q ss_pred HHHhCCC
Q 043580 649 EMRDCGM 655 (665)
Q Consensus 649 ~~~~~~~ 655 (665)
.+++...
T Consensus 102 ~lL~~eP 108 (144)
T 1y8m_A 102 TLFEHER 108 (144)
T ss_dssp HHHHTCC
T ss_pred HHHhcCC
Confidence 8877544
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.99 E-value=1 Score=34.89 Aligned_cols=69 Identities=9% Similarity=-0.075 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 586 MKADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPS-HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..|++.+--.+.+++.++.+ ..+++.+++.+....|. .-..++.|+-.+.+.|++++|+++.+.+++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 33677777777777777664 45677777777766663 34556777777888888888888887776654
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.30 E-value=2.9 Score=37.08 Aligned_cols=118 Identities=11% Similarity=0.150 Sum_probs=71.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChh----HHHHHhhHhhhc
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLK----HYGCMVDLLGRA 571 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 571 (665)
...+.|+.+.+++.+..-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556778888888877777764 557777777888888888888888888887743 66433 33333332
Q ss_pred CChHHHHH-HHHhCC----CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhccCCCCC
Q 043580 572 GQLEDAEE-VIRSMP----MKADVVIWGTLLAAS--RIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 572 g~~~~A~~-~~~~~~----~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+.... +|.--. ......-...++.+. ...|+.++|..+-.++.+.-|..+
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11221 121111 112223334445553 356888888888888877766544
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.19 E-value=0.67 Score=44.83 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...++.++...|++++++..++.++..+|-+...+..|..+|...|+..+|++.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566677888888888888888888888888888888888888888888888887744
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.94 E-value=2.8 Score=44.01 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=36.6
Q ss_pred HhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 531 TCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 531 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
-|...|+++.|+++-++.. .+.| +..+|..|+.+|...|+++.|+-.+..++
T Consensus 346 FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3445677777777777776 3466 57777777777777777777777777764
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.80 E-value=23 Score=36.37 Aligned_cols=348 Identities=11% Similarity=-0.053 Sum_probs=175.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcccchh
Q 043580 226 VMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDG-IAPNDVMIVDLISACGRAMAFG 304 (665)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~ 304 (665)
..+..+.+.+++...+..+.. ...+...-.....+....|+..+|....+.+=..| ..|+ .+..++..+.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~------ 147 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWR------ 147 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHH------
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHH------
Confidence 344555666677766665555 22233334445566666777666666666654443 2222 2333333333
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhh-HHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 043580 305 EGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIAS-WNALIAGFIRNGMIEDARQLFNNMQKRD 383 (665)
Q Consensus 305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 383 (665)
+.|......++.. +......|+...|..+.... .++... ...++..+. +...+....... .++
T Consensus 148 ----------~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l-~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~ 211 (618)
T 1qsa_A 148 ----------ASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQM-PADYQTIASAIISLAN---NPNTVLTFARTT-GAT 211 (618)
T ss_dssp ----------HTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTC-CGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCC
T ss_pred ----------HCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhC-CHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCC
Confidence 3332222222222 24445556666666555433 222221 222222222 222333333322 111
Q ss_pred cc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH----HHHHHHccCcHHHHHHHHHHHHHcCCCCChhH
Q 043580 384 VY---SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS----VFCAIASSGTLKEGRWAHEYVLNNSITLNDNL 456 (665)
Q Consensus 384 ~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 456 (665)
.. .+...+.-+.+ .+++.|...+....... ..+...... +.......+...++...+....... .+...
T Consensus 212 ~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 287 (618)
T 1qsa_A 212 DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (618)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHH
Confidence 11 12222333333 37788999988876543 223332222 2223333442444555555543322 33333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
..-.+....+.|+++.|...|..+.....+ .....-+..++...|+.++|..+|+.+... . ..|..+. ..+.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~L 360 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRI 360 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHc
Confidence 444555556789999999999999875322 333445666778899999999999998752 2 2233332 1222
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-Chh-----HHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLK-----HYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
|..-. . ....+.+ ... .-..-+..+...|....|...+..+....+......+.......|..+.+
T Consensus 361 g~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 361 GEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp TCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHH
Confidence 21000 0 0000111 000 11123455667898999988877765445555555555556778888888
Q ss_pred HHHHHHHh
Q 043580 610 ERAAKSLA 617 (665)
Q Consensus 610 ~~~~~~~~ 617 (665)
+....+..
T Consensus 433 v~~~~~~~ 440 (618)
T 1qsa_A 433 VQATIAGK 440 (618)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 77766543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.63 E-value=1.9 Score=35.03 Aligned_cols=59 Identities=7% Similarity=-0.107 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhC---CCCc-------chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDR---TTSV-------SPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
+-.-+..+...|.++.|+-+.+.+... .++. .++..+..++...+++.+|...|++.+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334456667777777777666654433 2332 1344555666666666666666666543
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.35 E-value=9.4 Score=43.05 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 043580 358 ALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGM 410 (665)
Q Consensus 358 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 410 (665)
.++..+...+.++.+.++..-.. .++.....+..++...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555666666666666554443 34444445566677777777777777654
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.68 E-value=0.89 Score=40.30 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..+.|+.+.|+..++..++.+|.+......|.+++|-.|+|+.|.+-++-+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555566666666666666666666566666666666666666655555443
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.53 E-value=17 Score=33.36 Aligned_cols=168 Identities=10% Similarity=-0.002 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCChHHHHHHHHHh
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLK----IYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.. +++-..+.+++++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566677888888888887654332 3445566554444 455556667888887777777766
Q ss_pred cccChHH-HHHHHHHHhHh---hcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 043580 533 CHAGLVD-LGERYFKSMKS---VYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH--- 603 (665)
Q Consensus 533 ~~~~~~~-~a~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 603 (665)
.....-+ .=.++.+++.+ ..+-.| ++.....+...|.+.|++.+|...|--. ...++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCC
Confidence 5532111 11122222221 113223 7889999999999999999999877522 112455565555554444
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|...++--++ ...+--|.-.|+...|..+++...+
T Consensus 182 ~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4332222211 1122236678899999988887654
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.27 E-value=18 Score=33.44 Aligned_cols=144 Identities=11% Similarity=0.029 Sum_probs=83.3
Q ss_pred HHhccCCH---HHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 199 MYCVCSSL---VEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 199 ~~~~~g~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
.....|++ =+|.+.+ .++..-|.+.+++++|++++.. -...+.+.|+...+-++-
T Consensus 21 ~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34455666 5555544 3555667778888888887632 233455667766555443
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHhhcccchh-hHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCChHHHHHH
Q 043580 276 ----RAMLCDGIAPNDVMIVDLISACGRAMAFG-EGLQIHSII----VKAG--FDCYDFIQATIIHFYAACGRINLARLQ 344 (665)
Q Consensus 276 ----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (665)
+-..+.++++|......++..+.....-+ .-..+.+.+ .+.| ...++.....+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55556678888888777777766544311 112222222 2223 334566667777777777777777776
Q ss_pred HHhccCCchhhHHHHHHHHH
Q 043580 345 FELGIKDHIASWNALIAGFI 364 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~ 364 (665)
|-.+-.+++..+..++--+.
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHH
Confidence 65555555455544444333
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.82 E-value=2.7 Score=30.55 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+ +.+...+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 345556666667778888888888888888888888888888888765 3333456666553
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.55 E-value=19 Score=33.00 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=82.3
Q ss_pred HHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHH----
Q 043580 199 MYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTM---- 274 (665)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---- 274 (665)
.-...|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 3444566666666543 556667777888888877642 23445566776665554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcccchh-hHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 043580 275 YRAMLCDGIAPNDVMIVDLISACGRAMAFG-EGLQIHSIIV----KAG--FDCYDFIQATIIHFYAACGRINLARLQFEL 347 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 347 (665)
++...+.+++++......++..+.....-+ .-.++.+.++ +.| ...++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 555566788888888888887765532211 1223333333 222 224566677777777777777777766654
Q ss_pred ccCCchhhHHHHHH
Q 043580 348 GIKDHIASWNALIA 361 (665)
Q Consensus 348 ~~~~~~~~~~~l~~ 361 (665)
+-..+...+..++-
T Consensus 160 ~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 160 GTHDSMIKYVDLLW 173 (312)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHH
Confidence 44334444444443
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.36 E-value=6.1 Score=28.52 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=29.6
Q ss_pred HHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHH
Q 043580 99 YIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLA 159 (665)
Q Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 159 (665)
+..+|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..+| .|....|.
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344555555555555555555544444332 34555566666666666554 33444443
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.91 E-value=3.8 Score=39.49 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=46.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh----hcCCCCChhHHH
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS----VYNVEPDLKHYG 562 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~ 562 (665)
.++..+...|++.+++..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|++.+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34555666777777777777766643 44666777777777777777777777776543 347777766543
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.77 E-value=9.3 Score=27.82 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhC
Q 043580 267 RLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAG 317 (665)
Q Consensus 267 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 317 (665)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445677788888888899999999999999999999999999998887653
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.36 E-value=18 Score=30.80 Aligned_cols=53 Identities=6% Similarity=0.046 Sum_probs=22.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043580 359 LIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
.+.++.+.|..+....+...+.+++..+-...+.++.+.+. ..+...+..+.+
T Consensus 132 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 132 AAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33333333333333333333334444444445555555443 344444444444
No 263
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.23 E-value=3.3 Score=33.11 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=53.5
Q ss_pred cchhhhHhhhhhhhcCCCCCCHHHHHHHHHHhhcc--------C-------------ChhHHHHHHHHHHHhCCCCC-cc
Q 043580 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAH--------I-------------AVSQGQQIHSLIFKSGLESN-TF 59 (665)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~-------------~~~~a~~~~~~~~~~~~~~~-~~ 59 (665)
|++.|..-..+..++-+.. ...+..+|..|.+. + ....+..+|..|.+.|+-.. +.
T Consensus 25 PL~~w~~YI~W~e~~~P~g--~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~Al 102 (152)
T 4a1g_A 25 PLGEWERYIQWVEENFPEN--KEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSP 102 (152)
T ss_dssp HHHHHHHHHHHHHTTCSSC--THHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHH
T ss_pred CHHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHH
Confidence 7788877776666655433 23466777777552 0 11235556666666554333 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHH
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISG 98 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~ 98 (665)
.|..-...+-..|++.+|.++|+...+.+......|.+.
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 141 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQ 141 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 445555555566666666666666665555555544443
No 264
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=83.81 E-value=1.7 Score=35.30 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=50.7
Q ss_pred cchhhhHhhhhhhhcCCCCCCHHHHHHHHHHhhccC---------------------ChhHHHHHHHHHHHhCCCCC-cc
Q 043580 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHI---------------------AVSQGQQIHSLIFKSGLESN-TF 59 (665)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------------~~~~a~~~~~~~~~~~~~~~-~~ 59 (665)
|++.|..-..+...+-+.......+..+|..|.+.- ....+..+|..|.+.|+-.. +.
T Consensus 18 PL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~Al 97 (164)
T 2wvi_A 18 PLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQ 97 (164)
T ss_dssp THHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHH
T ss_pred ChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHH
Confidence 888888766666554432222233455676666641 11235556666666554333 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHH
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMIS 97 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~ 97 (665)
.|..-...+-..|++..|.++|+...+.+......|-.
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 44555555556666666666666665554444444433
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.51 E-value=7.4 Score=43.88 Aligned_cols=149 Identities=8% Similarity=-0.009 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLG 569 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (665)
...++..+...+.++.+.++..- .+.+...--.+..++...|++++|.+.|++... ++..+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~-------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF-------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC--------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh--------
Confidence 34455556666666665543321 233443334455566677777777777776543 332211100
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-----hHHHHHHHHHhcCChhHH
Q 043580 570 RAGQLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP-----SRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A 643 (665)
....+-..+..... ...-...|..++..+.+.|.++.+.++.+.+++..+.+.. .+..+-+.+...|++++|
T Consensus 880 --~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 880 --AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp --SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred --hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 00011111111111 1123345667777777888888888888888765543332 355566777788888888
Q ss_pred HHHHHHHHhCCC
Q 043580 644 FSIRKEMRDCGM 655 (665)
Q Consensus 644 ~~~~~~~~~~~~ 655 (665)
...+-.+-+...
T Consensus 958 y~aL~~~pd~~~ 969 (1139)
T 4fhn_B 958 HVALMVLSTTPL 969 (1139)
T ss_dssp GHHHHHHHHSSS
T ss_pred HHHHHhCCCHHH
Confidence 777766655444
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.62 E-value=4.1 Score=39.91 Aligned_cols=91 Identities=7% Similarity=0.043 Sum_probs=44.8
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CCch----HH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-----MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS--HGPS----RV 628 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~----~~ 628 (665)
+...+++.|.+.|++++|.+.+.++. .+.-...+-..+..+...+|+..+...++++..+... ++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44455555556666666666555553 1122344455555555566666666666665432211 1111 12
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 043580 629 LLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.-|.++...++|.+|.+.|-++
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2333345556666666665554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.66 E-value=11 Score=27.21 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHH
Q 043580 38 AVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIM 95 (665)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 95 (665)
+.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||..+|.+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL 77 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLAL 77 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 45566666666665553 222222223445556666666666666666665555544
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.58 E-value=23 Score=29.88 Aligned_cols=34 Identities=3% Similarity=0.087 Sum_probs=14.9
Q ss_pred hcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043580 378 NMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 378 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
.+..++...-...+.++.+.|. ..+...+..+..
T Consensus 146 ~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 146 ALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3334444444444444444443 334444444443
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.17 E-value=5.6 Score=30.73 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
+..+-++.+....+.|++......+.+|.+.+|+..|.++|+.++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34455566666778888888888899999999999999999888864 3444556766654
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.47 E-value=11 Score=27.31 Aligned_cols=76 Identities=8% Similarity=-0.117 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhHHHhhhcCCC
Q 043580 38 AVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPI 117 (665)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 117 (665)
+.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||..+|.+|-. .|.|-.++++..+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 67889999999888874 33333334567778999999999999999999999987754 367777777777655543
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.24 E-value=20 Score=30.16 Aligned_cols=45 Identities=7% Similarity=-0.085 Sum_probs=22.7
Q ss_pred hHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 574 LEDAEEVIRSMP----MKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 574 ~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
..++.++|.-|. ...-...|......+...|++++|..+|+..++
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555554443 112344455555555555556666655555554
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=76.92 E-value=28 Score=33.94 Aligned_cols=205 Identities=12% Similarity=0.043 Sum_probs=93.0
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhcC
Q 043580 29 ALRYCSAHIAVSQGQQIHSLIFKSGLESNTFI--QNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRND 103 (665)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~ 103 (665)
.|..++..|+.+.++ .+++.|..++... ..+.+...+..|+.+-+.-+++.....+ ....+. +..-++.|
T Consensus 17 ~L~~Aa~~g~~~~v~----~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVK----NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHH----HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHT
T ss_pred HHHHHHHCCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCC
Confidence 344555566665444 4445566555321 2234555667788888887777655432 222333 33345667
Q ss_pred ChhhHHHhhhcCCCCCcc--cHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCH---hhHHHHHHHHhccCChHHHHHHH
Q 043580 104 RLNDAREVFDKTPIKCCV--SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNE---VTLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 104 ~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~ 178 (665)
+.+-+.-+++.-..++.. .-.+.+...++.|+.+-+..+++ .|..++. .-. +.+...+..|+.+.+
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~v---- 162 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRVA---- 162 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHHH----
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHHH----
Confidence 777666666654433221 11223344455566554444443 3322221 111 123333445555433
Q ss_pred HHHHHHhcCCchhH--HHHHHHHHhccCCHHHHHHHHhhccCCCccc--HHHHHHHHHhcCCHHHHHHHHhhC
Q 043580 179 GLVIKLMIDGFVII--STNLLNMYCVCSSLVEARSLFDEMKERNIVS--WNVMLNGFAKAGLVELARELFERI 247 (665)
Q Consensus 179 ~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~ 247 (665)
+.+.+.|..++... ....+...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+..+++.-
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 33334444333211 0112333445555555544444333322111 012233344555555555555543
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.65 E-value=31 Score=30.85 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHhcCCHHHHHHHHhhCC-C---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCC
Q 043580 230 GFAKAGLVELARELFERIP-S---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPN 286 (665)
Q Consensus 230 ~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 286 (665)
..+..|+.+-+..+++... . .+..-.+.+. ..+..++.....++++.+.+.|..++
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCC
Confidence 3344555555555555421 1 1222222332 23344555555566666666665554
No 274
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=75.58 E-value=45 Score=29.91 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=30.5
Q ss_pred CCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcC--CHHHHHHHHhhCCCCCeeeHHHHHHHHhh
Q 043580 187 DGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAG--LVELARELFERIPSKDVVSWGTMIDGYLQ 264 (665)
Q Consensus 187 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 264 (665)
.++..+-...+.++...|+.+..-.+...+..++...-...+.++.+.+ ..+-...+.+.+..++...-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3444444445555555554332222333333344333333333343333 22222222233333444333444444444
Q ss_pred cCC
Q 043580 265 VER 267 (665)
Q Consensus 265 ~~~ 267 (665)
.|+
T Consensus 219 ~~~ 221 (280)
T 1oyz_A 219 RKD 221 (280)
T ss_dssp TTC
T ss_pred hCC
Confidence 443
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.12 E-value=24 Score=27.29 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043580 267 RLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATII 329 (665)
Q Consensus 267 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 329 (665)
+.-+..+-++.+...++.|++......+++|.+.+|+..|.++++-++... .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444667777888888899999999999999999999999999998887653 22233444443
No 276
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.78 E-value=38 Score=28.71 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=58.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 043580 351 DHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA 430 (665)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 430 (665)
++...-...+.++.+.++.+....+.+.+.+++...-...+.++.+.+..+ +...+..+.. .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444444444555555555444445555555666666666677777766643 4444444443 455555566666676
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 043580 431 SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG 468 (665)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (665)
..+.. .+...+..+.+. ++..+-...+.++.+.+
T Consensus 169 ~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 169 EIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 66653 444444455443 34445555555555444
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.66 E-value=25 Score=31.48 Aligned_cols=21 Identities=5% Similarity=0.262 Sum_probs=12.0
Q ss_pred HHHHHhcCChhhHHHhhhcCC
Q 043580 96 ISGYIRNDRLNDAREVFDKTP 116 (665)
Q Consensus 96 l~~~~~~~~~~~A~~~~~~~~ 116 (665)
+...++.|+.+....+++.-.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 334456666666666665543
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=74.00 E-value=45 Score=32.44 Aligned_cols=177 Identities=10% Similarity=0.005 Sum_probs=80.3
Q ss_pred HHHHHHhcCCchHHHHHHhhcCCCCcc--hhhHHHHHHHhcCChhhHHHhhhcCCCCCcc--cHHHHHHHHhhcCChHHH
Q 043580 64 LINLYAKCGLISQAKSMFDSCSTLDPV--ACNIMISGYIRNDRLNDAREVFDKTPIKCCV--SYTSMIMGFAQNDCWREA 139 (665)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 139 (665)
.+..-+..|+.+-+..+++....++.. .....+..-++.|+.+-+.-+++.-...+.. .-.+.+...+..|+.+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~-- 94 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN-- 94 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH--
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH--
Confidence 455556778888888888876554322 1123344445677877777777654332221 1123344445556554
Q ss_pred HHHHHHhHHcCCCCCHhh--HHHHHHHHhccCChHHHHHHHHHHHHHhcCCchh--HHHHHHHHHhccCCHHHHHHHHhh
Q 043580 140 LEVFRDMRILGVIPNEVT--LASVISSSVHLGGIWECRMLHGLVIKLMIDGFVI--ISTNLLNMYCVCSSLVEARSLFDE 215 (665)
Q Consensus 140 ~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 215 (665)
+++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.+...+.. .-...+...+..|+.+-+.-+++.
T Consensus 95 --~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 95 --MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp --HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 3333444454443221 112233334455555444433 233222110 001123334455665555555544
Q ss_pred ccCCCcc--cHHHHHHHHHhcCCHHHHHHHHhhCC
Q 043580 216 MKERNIV--SWNVMLNGFAKAGLVELARELFERIP 248 (665)
Q Consensus 216 ~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (665)
-..++.. .-.+.+...+..|+.+-+.-+++.-.
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 203 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 3322211 01122333445555555555554433
No 279
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.03 E-value=77 Score=30.99 Aligned_cols=96 Identities=7% Similarity=0.036 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hHHHHHHHHHhcccChHHHHHHHHHHhHhh-cCCCCC----hh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKR--NIKLN---SITFIGVLSTCCHAGLVDLGERYFKSMKSV-YNVEPD----LK 559 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~----~~ 559 (665)
...|...+...|++.+|..++.++... |..+. ...+..-+..|...+++..|..++.++... +...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345777888899999999999887643 22121 135666778888999999999999987532 112222 34
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
.+...+..+...+++.+|-+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56778888889999999998877764
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.33 E-value=9.2 Score=32.82 Aligned_cols=96 Identities=13% Similarity=0.270 Sum_probs=47.8
Q ss_pred cchhhhHhhhhhhhcCCCCCC-HHHHHHHHHHhhcc-C--------------------ChhHHHHHHHHHHHhCCCCC-c
Q 043580 2 PLDHFHSVFNSQKANLQNSDY-ELALVSALRYCSAH-I--------------------AVSQGQQIHSLIFKSGLESN-T 58 (665)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~-~--------------------~~~~a~~~~~~~~~~~~~~~-~ 58 (665)
|++.|..-..+...+-+..-+ ..-+..+|..|.+. . ..+.+..+|..|...||-.. +
T Consensus 71 PL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~A 150 (223)
T 4aez_C 71 PLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESS 150 (223)
T ss_dssp THHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBH
T ss_pred ChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHH
Confidence 677777766655554432221 12244566555543 1 11244555555555554333 2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHH
Q 043580 59 FIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMIS 97 (665)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~ 97 (665)
..|..-...+-..|++.+|..+|+...+.+......|..
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 344455555555666666666666555544444444433
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=70.18 E-value=48 Score=27.81 Aligned_cols=18 Identities=11% Similarity=-0.102 Sum_probs=6.8
Q ss_pred CCeeeHHHHHHHHhhcCC
Q 043580 250 KDVVSWGTMIDGYLQVER 267 (665)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~ 267 (665)
++...-...+.++.+.++
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 333333333333443333
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.03 E-value=33 Score=28.87 Aligned_cols=53 Identities=9% Similarity=0.027 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 503 ANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 503 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
......+|..|..+|+--. +..|......+...|++.+|.++|+..++. +..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 4455555555555554432 234444555555555556666555555554 4445
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.08 E-value=86 Score=29.95 Aligned_cols=218 Identities=10% Similarity=0.042 Sum_probs=101.3
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCcchHHH--
Q 043580 424 SVFCAIASSGTLKEGRWAHEYVLNNSITLN-----DNLSAAIIDMYAKCGSINTAFEVFYHIRDR----TTSVSPWNA-- 492 (665)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~-- 492 (665)
.+...|...|++.+|..++..+.+.=-..| ..++..-+..|...+++.++...+...... .+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 344555555666666555555543111111 123444556666777777777666655443 122222111
Q ss_pred --HHHHHH-hcCChHHHHHHHHHHHHc----CCCCC---hHHHHHHHHHhcccChHHHHHHHHH-HhHhhcCCCCChhHH
Q 043580 493 --IICGLA-MHGDANLTLKIYSDLEKR----NIKLN---SITFIGVLSTCCHAGLVDLGERYFK-SMKSVYNVEPDLKHY 561 (665)
Q Consensus 493 --l~~~~~-~~~~~~~a~~~~~~~~~~----~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~p~~~~~ 561 (665)
-...+. ..+++..|...|-+..+. | .|. ...|..+..... ++..+...++. .....+ ..|....+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHHH
Confidence 112344 567777777766555321 1 111 112322222222 22112222221 111111 24555556
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
..++.+| ..+++.+...+++... ...|+.....+ ..+.+ .--...+.++. .|-.......++..+.- .
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i~--~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD----TMLEQNLCRII--EPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH----HHHHHHHHHHH--TTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH----HHHHHHHHHHh--HhhceeeHHHHHHHHCc--C
Confidence 6666665 5678877777777664 22344321111 00000 01112222222 35455556677665543 6
Q ss_pred hhHHHHHHHHHHhCCC
Q 043580 640 WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 640 ~~~A~~~~~~~~~~~~ 655 (665)
.+++...+-+|+..|.
T Consensus 330 ~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 330 MPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCC
Confidence 7888888888877653
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.52 E-value=19 Score=35.16 Aligned_cols=97 Identities=7% Similarity=-0.095 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHH---
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR----TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLNSITFI--- 526 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~--- 526 (665)
.+...+...|.+.|+++.|.+.+.++... +.-...+..++..+...+++..+...+.+....- -.++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35567888899999999999999888775 2223467777888888889999888888775431 122332222
Q ss_pred -HHHHHhcccChHHHHHHHHHHhHhh
Q 043580 527 -GVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 527 -~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
.-...+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2233445678888888888888765
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=66.96 E-value=34 Score=28.48 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
.+..|.+.|.+++|.+++++..+..|++......|..+-.+.+-+..-++
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 44567888888888888888888777777666666666655555544443
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=64.26 E-value=25 Score=31.18 Aligned_cols=88 Identities=8% Similarity=-0.072 Sum_probs=55.9
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCCcch-------HHHHHHHHH--hcCCchHHHHHHhhcCC--------------
Q 043580 30 LRYCSAHIAVSQGQQIHSLIFKSGLESNTFI-------QNSLINLYA--KCGLISQAKSMFDSCST-------------- 86 (665)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~~~~-------------- 86 (665)
|-.+++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+.-+++....
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3345567899999999999998887776443 344444432 56888888888775421
Q ss_pred CCcchhhHHHHHHHhcCChhhHHHhhhcCCCC
Q 043580 87 LDPVACNIMISGYIRNDRLNDAREVFDKTPIK 118 (665)
Q Consensus 87 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 118 (665)
.|...++.|. .-+..|+.+-+.-+++.-..+
T Consensus 89 ~d~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~ 119 (260)
T 3jxi_A 89 VYYRGQTALH-IAIERRCKHYVELLVEKGADV 119 (260)
T ss_dssp SSEESBCHHH-HHHHTTCHHHHHHHHHTTCCT
T ss_pred cccCCCCHHH-HHHHcCCHHHHHHHHhCCCCc
Confidence 1223344443 345678888777777754433
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.01 E-value=61 Score=27.85 Aligned_cols=51 Identities=18% Similarity=0.027 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeH--HHHHHHHhhcCChhHHHHHHHH
Q 043580 227 MLNGFAKAGLVELARELFERIPSKDVVSW--GTMIDGYLQVERLSEALTMYRA 277 (665)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 277 (665)
.+...+..|+.+-+.-+++.-..++.... .+-+....+.|+.+-+.-+++.
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 34444556666666666655443322211 1233344555665554444443
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.50 E-value=55 Score=26.13 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 506 TLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
...+|..|..+|+--. +..|......+...|++.+|.++|+.-++. +..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 5566666666655443 234555555556666666666666666655 5555
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=58.73 E-value=94 Score=27.90 Aligned_cols=17 Identities=0% Similarity=-0.056 Sum_probs=8.3
Q ss_pred HHhcCCchHHHHHHhhc
Q 043580 68 YAKCGLISQAKSMFDSC 84 (665)
Q Consensus 68 ~~~~g~~~~a~~~~~~~ 84 (665)
.+..|+.+.+..+++..
T Consensus 38 A~~~g~~~~v~~Ll~~g 54 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAG 54 (285)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhCC
Confidence 33445555555555443
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.20 E-value=94 Score=26.71 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=54.1
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhcCCchHHHHHHhhcCCCCc---chhhHHHHHHHhcCC
Q 043580 30 LRYCSAHIAVSQGQQIHSLIFKSGLESNTFI--QNSLINLYAKCGLISQAKSMFDSCSTLDP---VACNIMISGYIRNDR 104 (665)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~ 104 (665)
|..++..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+.-+++....++. ...+. +...++.|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 4455667888888888888777776555432 22345556677888888888876655432 22333 334456777
Q ss_pred hhhHHHhhhcCC
Q 043580 105 LNDAREVFDKTP 116 (665)
Q Consensus 105 ~~~A~~~~~~~~ 116 (665)
.+-...+++...
T Consensus 92 ~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 92 PTCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC
Confidence 777777776543
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.99 E-value=51 Score=28.47 Aligned_cols=30 Identities=3% Similarity=-0.208 Sum_probs=17.8
Q ss_pred HHHHHhhcCChHHHHHHHHHhHHcCCCCCH
Q 043580 126 MIMGFAQNDCWREALEVFRDMRILGVIPNE 155 (665)
Q Consensus 126 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 155 (665)
.+...++.|+.+-+..+++.+.+.|..++.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 41 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDI 41 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 344455667777666666666666555443
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.63 E-value=77 Score=25.68 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCCCh-HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 506 TLKIYSDLEKRNIKLNS-ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
...+|..|..+|+--.. ..|......+...|++.+|.++|...++. +..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc
Confidence 44566666666654433 34555555566666777777777666665 5555
No 293
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.52 E-value=1.4e+02 Score=28.08 Aligned_cols=68 Identities=12% Similarity=0.236 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCChhHH
Q 043580 355 SWNALIAGFIRNGMIEDARQLFNNMQKRD---VYSWSAMISGYAQNEQ--PNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 355 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
....++.-|...|+.++|.+.++++..+. ..+...+..++-+.++ .+....++..+...|+-+.....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 35678888889999999999999998763 2234444445544333 34577788888877765544443
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.38 E-value=58 Score=25.14 Aligned_cols=63 Identities=8% Similarity=0.156 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC---eeeHHHHHHHHhhcCC--hhHHHHHHHHHHHCCCCCCHH
Q 043580 226 VMLNGFAKAGLVELARELFERIPSKD---VVSWGTMIDGYLQVER--LSEALTMYRAMLCDGIAPNDV 288 (665)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 288 (665)
.++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34444444444445544444444331 1223333344444332 345667777777666555443
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.82 E-value=22 Score=35.19 Aligned_cols=68 Identities=9% Similarity=0.063 Sum_probs=46.5
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCCCCCC---H---HHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD---V---VIW-GTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
...++.+++.|...+.++.|..+..+...+.. . ..| ..++..+.-.+++.+|.+.+..++..-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 45677778888888888888888888764321 1 122 23445566778888888888888877776543
No 296
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=53.48 E-value=34 Score=34.03 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=37.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
|+....-....+.|...|.++..+.|++...+.+||-+....|+.-+|.=.|-+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33334444556777777777777777777777777777777777766665555544
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.21 E-value=1.1e+02 Score=26.20 Aligned_cols=17 Identities=0% Similarity=-0.220 Sum_probs=8.0
Q ss_pred HhhcccchhhHHHHHHH
Q 043580 296 ACGRAMAFGEGLQIHSI 312 (665)
Q Consensus 296 ~~~~~~~~~~a~~~~~~ 312 (665)
...+.|+.+-+..+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33445555544444443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.16 E-value=46 Score=32.96 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCCh--hH-HHHHhhHhhhcCChHHHHHHHHhCCCC-CC-HHHHHHH
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDL--KH-YGCMVDLLGRAGQLEDAEEVIRSMPMK-AD-VVIWGTL 596 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l 596 (665)
...++.++..|...+.++.|..+..+..--....+|. .. +-.++..+.-.+++.+|.+.+..+..+ |. ....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~--- 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL--- 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS---
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh---
Confidence 3578899999999999999999999875110001111 11 223567778899999999998876532 32 1111
Q ss_pred HHHHHhcCCHHHH---HHHHHHHhccCCCCC-----------chHHHHHHHHHhcCChhHHHHHHHH
Q 043580 597 LAASRIHGNVEVG---ERAAKSLAGLQPSHG-----------PSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 597 ~~~~~~~g~~~~A---~~~~~~~~~~~p~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
|....+ .-..+-+.+.-|+-. ..|..|+.++ +.|+.++..+.+++
T Consensus 308 -------gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 308 -------GFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp -------HHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 111112 122233345556322 1266677765 67888777766644
No 299
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.10 E-value=1.6e+02 Score=28.12 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=87.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-----HHHHHHHHHHccCcHHHHHHHHHHHHH--cCCCCChhHH----
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGVKPNEI-----TMVSVFCAIASSGTLKEGRWAHEYVLN--NSITLNDNLS---- 457 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~---- 457 (665)
.++..|...|++.+|.+++.++.+.--..|.. .+..-+..+...++...+...+..... ..+.+++.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 56778888888888888888877632222222 244445667788888888888877753 2232333322
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHchhC--CCC------cchHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCCChHHHHH
Q 043580 458 AAIIDMYA-KCGSINTAFEVFYHIRDR--TTS------VSPWNAIICGLAMHGDANLTLKIYS-DLEKRNIKLNSITFIG 527 (665)
Q Consensus 458 ~~l~~~~~-~~~~~~~A~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~ 527 (665)
.+-...+. ..+++..|...|-+.... ... ...|..+ .+... ++..+.-.++. .....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 22233445 688888887776655332 111 1122222 22222 23222222221 1111112344445555
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCCChh
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEPDLK 559 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 559 (665)
++.++ ..+++.....+++.... .+..|+.
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK--ELAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT--TTTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH--HHhcChH
Confidence 66554 44667666676666543 2334544
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.03 E-value=17 Score=32.22 Aligned_cols=93 Identities=16% Similarity=-0.006 Sum_probs=42.4
Q ss_pred HHHhhcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHhh--cccchhhHHHHHHHHHHhC---------CCCc
Q 043580 260 DGYLQVERLSEALTMYRAMLCDGIAPNDVM-------IVDLISACG--RAMAFGEGLQIHSIIVKAG---------FDCY 321 (665)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~ 321 (665)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344456677666666666655554444221 223333321 4455555555544432211 0000
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccCCc
Q 043580 322 DFIQATIIHFYAACGRINLARLQFELGIKDH 352 (665)
Q Consensus 322 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 352 (665)
.......+...+..|+.+.+..+++.+..++
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 120 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKGADVH 120 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC
Confidence 0011123344455666666666666555444
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.79 E-value=2.2e+02 Score=29.42 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=37.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHh---CCCchHH
Q 043580 327 TIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQ---NEQPNMA 403 (665)
Q Consensus 327 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a 403 (665)
....++.-.|+++.|...+-.....+...+...+.. .|-+.....++..-......-+..||..|.+ ..++..|
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~---~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLAS---LKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHH---TTC-----------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHH---cCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHH
Confidence 345566667888888887765533333333332222 2222211111111001112346667777765 3667777
Q ss_pred HHHHHHH
Q 043580 404 LELFHGM 410 (665)
Q Consensus 404 ~~~~~~m 410 (665)
+++|--+
T Consensus 376 l~Y~~li 382 (661)
T 2qx5_A 376 VEYLVLI 382 (661)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 7776655
No 302
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=50.88 E-value=62 Score=28.40 Aligned_cols=87 Identities=6% Similarity=-0.104 Sum_probs=55.3
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCCc-------chHHHHHHHHHhc---CCchHHHHHHhhcCCCC----------
Q 043580 29 ALRYCSAHIAVSQGQQIHSLIFKSGLESNT-------FIQNSLINLYAKC---GLISQAKSMFDSCSTLD---------- 88 (665)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~---------- 88 (665)
.|-.++..|+.+....+++.+++.|..++. .-.+.|. ..+.. |+.+-+.-+++....++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 344566778888888899999988876554 3334443 44445 88888888877643221
Q ss_pred ----cchhhHHHHHHHhcCChhhHHHhhhcCCC
Q 043580 89 ----PVACNIMISGYIRNDRLNDAREVFDKTPI 117 (665)
Q Consensus 89 ----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 117 (665)
....+.|. .-+..|+.+-+.-+++.-..
T Consensus 84 ~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 84 TDEFYQGHSALH-IAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp CSTTTTTCCHHH-HHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence 22344443 34567888877777776443
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=49.59 E-value=1.6e+02 Score=26.99 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC--hHHHHHHHHHHhHhhcCCCC
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG--LVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p 556 (665)
...++.-|...|+.++|.+.++++..-.+. .......+..+..+.+ ..+...+++..+.+. ++-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCC
Confidence 556788888889999999999887531111 1234445555665543 245566777777655 4444
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.48 E-value=48 Score=26.55 Aligned_cols=62 Identities=8% Similarity=0.150 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---eeeHHHHHHHHhhcCC--hhHHHHHHHHHHHCCCCCCHH
Q 043580 227 MLNGFAKAGLVELARELFERIPSKD---VVSWGTMIDGYLQVER--LSEALTMYRAMLCDGIAPNDV 288 (665)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 288 (665)
++.-|...|+.++|...++++..|. ..++..+..++-+.++ .+.+..++..+...|+-+...
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3444444444444444444443331 1222333334433222 345666677776666554443
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.29 E-value=1.3e+02 Score=25.20 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=40.5
Q ss_pred HHHHHHH---hCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCc-----HHHHHHHHHHHHHcCCC
Q 043580 389 AMISGYA---QNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT-----LKEGRWAHEYVLNNSIT 451 (665)
Q Consensus 389 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 451 (665)
.+|+++. +..+++.|+-++-+|.+.| .|.-..-..++.+....|. ...|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445543 5689999999999999999 7766666666677666654 22334444444455544
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.85 E-value=1.7e+02 Score=26.23 Aligned_cols=140 Identities=10% Similarity=-0.037 Sum_probs=74.5
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhcCChh
Q 043580 30 LRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRNDRLN 106 (665)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 106 (665)
|..++..|+.+. .+.+++.|..++...-.+.+...+..|+.+-+.-+++....++ ...++.|. ..+..|+.+
T Consensus 35 L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRL----VCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHH----HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHH
Confidence 334445666654 4455556765555433445666677899988888888765543 33334333 345667777
Q ss_pred hHHHhhhcCCCCC---cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHh-hHHHHHHHHhccCChHHHHHHH
Q 043580 107 DAREVFDKTPIKC---CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEV-TLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 107 ~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~ 178 (665)
-+.-+++.-..++ ..-+.+.+...+..|+.+ +.+.+.+.|..+... .-.+.+...+..|+.+.++.++
T Consensus 110 ~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 7777776533322 223345555556666654 334444444333221 2233344445556655444443
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.42 E-value=1e+02 Score=24.62 Aligned_cols=64 Identities=13% Similarity=0.270 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCh
Q 043580 356 WNALIAGFIRNGMIEDARQLFNNMQKRD---VYSWSAMISGYAQNEQ--PNMALELFHGMVDAGVKPNE 419 (665)
Q Consensus 356 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 419 (665)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567777778888888888888887552 2233444444444322 34567777777776654443
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.07 E-value=1.1e+02 Score=23.59 Aligned_cols=65 Identities=12% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCChh
Q 043580 356 WNALIAGFIRNGMIEDARQLFNNMQKRD---VYSWSAMISGYAQNEQ--PNMALELFHGMVDAGVKPNEI 420 (665)
Q Consensus 356 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 420 (665)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4567777778888888888888887552 1233444444444432 356777777777776544433
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.84 E-value=1.9e+02 Score=26.39 Aligned_cols=196 Identities=10% Similarity=0.150 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCee--eHHHHHHHHhhcCC--hhHHHHHHHHHHHCCCCCCHHH---HHHHHHH
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPSKDVV--SWGTMIDGYLQVER--LSEALTMYRAMLCDGIAPNDVM---IVDLISA 296 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~ 296 (665)
...++.-|...|+.++|...++++..|... ....++......++ .+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 456888899999999999999999877521 12222332333332 3445567777764 44444433 4444444
Q ss_pred hhccc-chhhHHHHHHHHHH----hCCCCchhHHHHHHHHHHhcCC--hHHHHHHHH-----------hcc---CCch--
Q 043580 297 CGRAM-AFGEGLQIHSIIVK----AGFDCYDFIQATIIHFYAACGR--INLARLQFE-----------LGI---KDHI-- 353 (665)
Q Consensus 297 ~~~~~-~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~-----------~~~---~~~~-- 353 (665)
+-... |...|...+..+.. .++-|...+.......-...|. ...|..++. +|. ..+.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 43322 44455555544443 2332222111100000000000 112222221 010 1111
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCChh
Q 043580 354 --ASWNALIAGFIRNGMIEDARQLFNNMQKRD---VYSWSAMISGYAQNEQ--PNMALELFHGMVDAGVKPNEI 420 (665)
Q Consensus 354 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 420 (665)
.....++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 134567778888889999999998887662 1233344444444322 345667777777766554433
No 310
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.36 E-value=1.5e+02 Score=25.20 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=36.7
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhcCC
Q 043580 30 LRYCSAHIAVSQGQQIHSLIFKSGLESNTFI--QNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRNDR 104 (665)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~ 104 (665)
|..++..|+.+ +.+.+++.|..++... -.+.+...+..|+.+.+.-+++....++ ....+. +...+..|+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~ 89 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKGH 89 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCC
Confidence 33444455543 3444455565444321 1123444455667666666666544332 222222 223344555
Q ss_pred hhhHHHhhhc
Q 043580 105 LNDAREVFDK 114 (665)
Q Consensus 105 ~~~A~~~~~~ 114 (665)
.+-+..+++.
T Consensus 90 ~~~~~~Ll~~ 99 (237)
T 3b7b_A 90 YEVVQYLLSN 99 (237)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 5555555544
No 311
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=42.92 E-value=95 Score=22.61 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=24.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 043580 363 FIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG 414 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 414 (665)
+...|++++|..+.+...-||...|-++.. .+.|..+++...+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555555555555555555544432 23455555555554444444
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.19 E-value=1.6e+02 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=15.7
Q ss_pred HHHHHHHhccCCHHHHHHHHhhccCC
Q 043580 194 TNLLNMYCVCSSLVEARSLFDEMKER 219 (665)
Q Consensus 194 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 219 (665)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34556666666666666666666544
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.11 E-value=66 Score=22.14 Aligned_cols=62 Identities=8% Similarity=-0.034 Sum_probs=40.5
Q ss_pred HHhHHcCCCCCHhhHHHHHHHHhccC-ChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 144 RDMRILGVIPNEVTLASVISSSVHLG-GIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 144 ~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
+.|.+.|++++..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 44667777776654 34556665554 4556777888887776666766666677777666643
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.11 E-value=2.2e+02 Score=26.52 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=6.7
Q ss_pred hccCCHHHHHHHHh
Q 043580 201 CVCSSLVEARSLFD 214 (665)
Q Consensus 201 ~~~g~~~~a~~~~~ 214 (665)
+..|+.+-+.-+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455554444444
No 315
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.77 E-value=83 Score=27.41 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 627 RVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 627 ~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
.......+.+.|+-++|.++|-+.+
T Consensus 94 ~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 94 LKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhHHHHHHHHHH
Confidence 4444455666777777776665553
No 316
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.95 E-value=1.1e+02 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=13.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHH
Q 043580 258 MIDGYLQVERLSEALTMYRAML 279 (665)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~m~ 279 (665)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455666666777766666554
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.42 E-value=1.6e+02 Score=24.95 Aligned_cols=169 Identities=12% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHh-CCCCCcchH--HHHHHHHHhcCCchHHHHHHhhcCCCCcc-------hhhHHHHHHHhcCChhhHHHhh
Q 043580 43 QQIHSLIFKS-GLESNTFIQ--NSLINLYAKCGLISQAKSMFDSCSTLDPV-------ACNIMISGYIRNDRLNDAREVF 112 (665)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~A~~~~ 112 (665)
.++.+.+++. |..++.... .+.+...+..|+.+-+..+++........ .-..-+..-+..|+.+-+.-++
T Consensus 16 ~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 95 (232)
T 2rfa_A 16 VQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95 (232)
T ss_dssp HHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHH
Q ss_pred hcCCCCCcc---------------cHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHh--hHHHHHHHHhccCChHHHH
Q 043580 113 DKTPIKCCV---------------SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEV--TLASVISSSVHLGGIWECR 175 (665)
Q Consensus 113 ~~~~~~~~~---------------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~ 175 (665)
+.-..++.. .-.+.+...+..|+. ++++.+.+.|..++.. .-.+.+...+..|+.+.+.
T Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~ 171 (232)
T 2rfa_A 96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE----EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC 171 (232)
T ss_dssp HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHH
T ss_pred hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHH
Q ss_pred HHHHHHHHHhcCCc--------hhHHHHHHHHHhccCCHHHHHHHHhh
Q 043580 176 MLHGLVIKLMIDGF--------VIISTNLLNMYCVCSSLVEARSLFDE 215 (665)
Q Consensus 176 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~ 215 (665)
.+++.+.+.|..++ ...-.+-+...++.|+.+-+.-+++.
T Consensus 172 ~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 172 QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
No 318
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.09 E-value=1.2e+02 Score=25.35 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=30.9
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCc
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT 434 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 434 (665)
.+..+++.|+-++-+|++.|-.|.-..-..++.+....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3568999999999999999987777666666666665554
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.18 E-value=1.5e+02 Score=25.48 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 505 LTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
....+|..|..+|+--. ...|......+...|++.+|.++|+.-++. +..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 44455666666555443 234555555555566666666666666555 5555
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.51 E-value=35 Score=28.86 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHhhcCCCCC-hhHHH-----HHhhHhhhcCChHHHHHHHHhCCCC
Q 043580 538 VDLGERYFKSMKSVYNVEPD-LKHYG-----CMVDLLGRAGQLEDAEEVIRSMPMK 587 (665)
Q Consensus 538 ~~~a~~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (665)
.+.|+.+|+.+.+...+..+ ..... ..+-.|.+.|.+++|.+++++.-.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 46677777777665222111 11111 2233456677777777777766533
No 321
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.26 E-value=1.4e+02 Score=25.45 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=6.1
Q ss_pred hccCCHHHHHHHHh
Q 043580 201 CVCSSLVEARSLFD 214 (665)
Q Consensus 201 ~~~g~~~~a~~~~~ 214 (665)
+..|+.+-+.-+++
T Consensus 52 ~~~~~~~~v~~Ll~ 65 (237)
T 3b7b_A 52 AENNHLEAVKYLIK 65 (237)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhCCHHHHHHHHh
Confidence 34444444444443
No 322
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.00 E-value=2e+02 Score=24.35 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=43.1
Q ss_pred hHHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCc-----HHHHHHHHHHHHHcCCC
Q 043580 386 SWSAMISGYA---QNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT-----LKEGRWAHEYVLNNSIT 451 (665)
Q Consensus 386 ~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 451 (665)
....+|+++. +..+++.|+-++-+|++.|-.|.-..-..++.+....|. ...|...++.....|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3334555554 568999999999999999988877776777777666554 22334444444444443
No 323
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.71 E-value=66 Score=28.62 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=13.7
Q ss_pred HHHHHhcCChHHHHHHHHhccCCc
Q 043580 329 IHFYAACGRINLARLQFELGIKDH 352 (665)
Q Consensus 329 ~~~~~~~g~~~~a~~~~~~~~~~~ 352 (665)
+...+..|+.+.+..+++.+..++
T Consensus 105 L~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 105 LHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCcC
Confidence 334455666666666666655443
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.13 E-value=81 Score=24.51 Aligned_cols=62 Identities=6% Similarity=-0.010 Sum_probs=41.5
Q ss_pred HHhHHcCCCCCHhhHHHHHHHHhccC-ChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 144 RDMRILGVIPNEVTLASVISSSVHLG-GIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 144 ~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
+.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346677887776544 4555666555 6677888888888887777776666666776666643
No 325
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=34.04 E-value=2.5e+02 Score=24.94 Aligned_cols=21 Identities=5% Similarity=-0.107 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCchHHHHH
Q 043580 60 IQNSLINLYAKCGLISQAKSM 80 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~ 80 (665)
...+.+...+..|+.++..++
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~ 34 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGS 34 (285)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHhhcCCCCCcccC
Confidence 334455555566666555554
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.02 E-value=86 Score=24.94 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=43.3
Q ss_pred HHHhHHcCCCCCHhhHHHHHHHHhccC-ChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 143 FRDMRILGVIPNEVTLASVISSSVHLG-GIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 143 ~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
.+.|++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3456778888776544 4555665555 5667888888888887777777666677777776654
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.96 E-value=1.4e+02 Score=23.68 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=43.3
Q ss_pred HHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 142 VFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 142 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
+.+.+++.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 14 ~~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3445677888766553 345666666666778899999998888777777766677777777654
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.82 E-value=2.1e+02 Score=31.38 Aligned_cols=29 Identities=3% Similarity=-0.264 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
.|..++..+.+.+.++-+..+.+.+++.-
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 56777777778888888888888887543
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.43 E-value=75 Score=29.64 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC
Q 043580 357 NALIAGFIRNGMIEDARQLFNNMQKR 382 (665)
Q Consensus 357 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 382 (665)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34455555556666666666665544
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.98 E-value=1.7e+02 Score=23.64 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=49.6
Q ss_pred HHHHHHH-HHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH--hcCCchhHHHHHHHHHhccCCH
Q 043580 137 REALEVF-RDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL--MIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 137 ~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
+.+.+-+ +.+++.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444434 4456778887665 446677777777788899999999988 7777777766677777777754
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.72 E-value=55 Score=23.68 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHH
Q 043580 367 GMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMAL 404 (665)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 404 (665)
...++|.++++.+..+++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35777888888888888888888888887767655543
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.62 E-value=74 Score=25.10 Aligned_cols=63 Identities=10% Similarity=-0.049 Sum_probs=38.3
Q ss_pred HHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHH
Q 043580 144 RDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLV 207 (665)
Q Consensus 144 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 207 (665)
+.+++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345666766665433 344455445555667777777776666666666666677777766543
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.32 E-value=1.8e+02 Score=22.64 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=8.8
Q ss_pred HHHhcCCchHHHHHHhh
Q 043580 67 LYAKCGLISQAKSMFDS 83 (665)
Q Consensus 67 ~~~~~g~~~~a~~~~~~ 83 (665)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555555555554
No 334
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.12 E-value=98 Score=24.25 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=45.2
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCC---CcchHHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhc
Q 043580 29 ALRYCSAHIAVSQGQQIHSLIFKSGLES---NTFIQNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRN 102 (665)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~ 102 (665)
.|-.++..|+.+.+..+++. .+..+ +..-. +.+.. +..|+.+-+..+++....++ ....+.|. ..++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~-t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 78 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR---ELVHPDALNRFGK-TALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVH-DAART 78 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSC-CHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh---hCcCccccCCCCC-cHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH-HHHHc
Confidence 34455666888777777766 22222 22222 33444 77788888888887765443 22333333 33455
Q ss_pred CChhhHHHhhhcC
Q 043580 103 DRLNDAREVFDKT 115 (665)
Q Consensus 103 ~~~~~A~~~~~~~ 115 (665)
|+.+-..-+++.-
T Consensus 79 ~~~~~v~~Ll~~g 91 (156)
T 1bd8_A 79 GFLDTLKVLVEHG 91 (156)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CcHHHHHHHHHcC
Confidence 6766666666543
No 335
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.09 E-value=3.4e+02 Score=25.51 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCCC---cchHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDRTTS---VSPWNAIICGLAMHGD--ANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p 520 (665)
..++.-|...|+.++|...++++.. |+ ......++......++ .+.+..++..+...|+-+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~--p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRA--PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC--CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC--chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 4466666777777777777777654 42 1122222322222222 234555666666655433
No 336
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.04 E-value=63 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 043580 627 RVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 627 ~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+...+..+.+.|+|++|++..+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344555566666666665555444
No 337
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.81 E-value=77 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=14.1
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 043580 600 SRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (665)
+-+.|++++|+.+|.++++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4567888888888877754
No 338
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.72 E-value=2.9e+02 Score=24.33 Aligned_cols=81 Identities=10% Similarity=-0.054 Sum_probs=30.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcC--CHHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 043580 319 DCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNG--MIEDARQLFNNMQKRDVYSWSAMISGYAQ 396 (665)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 396 (665)
.++..+....+.++.+.|+.+....+.+....++...-...+.++...+ ..+-...+...+..++..+-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3455555555555555554322222222222333333333333333333 22222223333334444444444455555
Q ss_pred CCC
Q 043580 397 NEQ 399 (665)
Q Consensus 397 ~~~ 399 (665)
.|+
T Consensus 219 ~~~ 221 (280)
T 1oyz_A 219 RKD 221 (280)
T ss_dssp TTC
T ss_pred hCC
Confidence 553
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.42 E-value=1.4e+02 Score=20.43 Aligned_cols=62 Identities=6% Similarity=0.047 Sum_probs=42.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 043580 276 RAMLCDGIAPNDVMIVDLISACGRAM-AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI 338 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (665)
+.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34667787777655 34556665554 5667888888888877667777777777777666643
No 340
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.67 E-value=86 Score=21.84 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=14.9
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 043580 600 SRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (665)
+-+.|++++|+.+|.++++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4578889999888887754
No 341
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.58 E-value=2.3e+02 Score=26.27 Aligned_cols=57 Identities=14% Similarity=0.027 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCC
Q 043580 229 NGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAP 285 (665)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 285 (665)
...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.....|..|
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 334445555555555555443322111223333445566555555555443334333
No 342
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.90 E-value=65 Score=26.85 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCchHHHHHHhhcCC
Q 043580 63 SLINLYAKCGLISQAKSMFDSCST 86 (665)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~ 86 (665)
..+..|.+.|.+++|.++|++...
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHccchHHHHHHHHHHhc
Confidence 356778888888888888888544
No 343
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.35 E-value=2.3e+02 Score=22.37 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=42.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 043580 275 YRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI 338 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (665)
-+.+++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+....+..+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3446678887765433 44555555566788999999998888777777777777777776654
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.87 E-value=2.3e+02 Score=22.32 Aligned_cols=63 Identities=6% Similarity=0.072 Sum_probs=44.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 043580 276 RAMLCDGIAPNDVMIVDLISACGRAM-AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRIN 339 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 339 (665)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..+....+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446678888876544 3455555555 67789999999988887777777777777777776543
No 345
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.66 E-value=80 Score=22.82 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=19.2
Q ss_pred CchHHHHHHhhcCCCCcchhhHHHHHHHhcCChh
Q 043580 73 LISQAKSMFDSCSTLDPVACNIMISGYIRNDRLN 106 (665)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 106 (665)
..+.|.++++.++...+..|..++.++...|...
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4555566666666655556666666555444443
No 346
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.66 E-value=2.2e+02 Score=21.94 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 043580 277 AMLCDGIAPNDVMIVDLISACGRAM-AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI 338 (665)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (665)
.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..+....+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45667877775543 3444555555 6778888888888887777777766666666666554
No 347
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.09 E-value=94 Score=19.96 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhCCCCCcchHHHHHHHH-HhcC
Q 043580 40 SQGQQIHSLIFKSGLESNTFIQNSLINLY-AKCG 72 (665)
Q Consensus 40 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g 72 (665)
++|...|-.|++..-.++..+|...+..+ ++-.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 67888899999877677778999999888 5543
No 348
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.05 E-value=2e+02 Score=22.60 Aligned_cols=34 Identities=3% Similarity=-0.065 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 043580 435 LKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG 468 (665)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (665)
.-.|.++++.+.+.+...+..+..-.++.+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444433333333333344444443
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.57 E-value=85 Score=24.76 Aligned_cols=60 Identities=15% Similarity=-0.045 Sum_probs=34.5
Q ss_pred HHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 144 RDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 144 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
+.+++.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 345566776665532 3344444444 45677777777766666665555555666655554
No 350
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.05 E-value=1.7e+02 Score=25.75 Aligned_cols=88 Identities=7% Similarity=-0.017 Sum_probs=55.6
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCC-------CcchHHHHHHHHH--hcCCchHHHHHHhhcCC-------------
Q 043580 29 ALRYCSAHIAVSQGQQIHSLIFKSGLES-------NTFIQNSLINLYA--KCGLISQAKSMFDSCST------------- 86 (665)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~------------- 86 (665)
.|-.++..|+.+.+..+++...+.+... +..-.+.|..+.. +.|+.+-+.-+++....
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 3444556788898988998888776443 3344555655554 35888888888776321
Q ss_pred -CCcchhhHHHHHHHhcCChhhHHHhhhcCCC
Q 043580 87 -LDPVACNIMISGYIRNDRLNDAREVFDKTPI 117 (665)
Q Consensus 87 -~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 117 (665)
.|...++.|.. -++.|+.+-+.-+++.-..
T Consensus 96 ~~d~~g~tpL~~-A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 96 DSYYKGQTALHI-AIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp STTTTTCCHHHH-HHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCCHHHH-HHHcCCHHHHHHHHHCCCC
Confidence 22334444443 3567888888878776443
No 351
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.01 E-value=2.9e+02 Score=22.48 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhcCChhhHHHhhhc
Q 043580 64 LINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRNDRLNDAREVFDK 114 (665)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~ 114 (665)
.+...+..|+.+-+.-+++....++ ....+.+ ...+..|+.+-+..+++.
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY-LYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhc
Confidence 3444456677777777776654432 2223333 233456666666666643
No 352
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.55 E-value=3.3e+02 Score=22.86 Aligned_cols=49 Identities=10% Similarity=-0.042 Sum_probs=23.9
Q ss_pred HHHHHhcCCchHHHHHHhhcCC----CCcchhhHHHHHHHhcCChhhHHHhhhc
Q 043580 65 INLYAKCGLISQAKSMFDSCST----LDPVACNIMISGYIRNDRLNDAREVFDK 114 (665)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 114 (665)
+...++.|+++....+++.-.. ++...++.|. ..++.|+.+-...+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHHHHHHHHh
Confidence 4455566777777666654322 2333333322 23445555555555543
No 353
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.20 E-value=1.6e+02 Score=25.54 Aligned_cols=28 Identities=4% Similarity=-0.119 Sum_probs=16.4
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCCC
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAPN 286 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 286 (665)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3444566777766666666665554433
No 354
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.04 E-value=1.2e+02 Score=23.90 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccC
Q 043580 123 YTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLG 169 (665)
Q Consensus 123 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 169 (665)
-..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 444555565556 6789999999988877777776666565555554
No 355
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.84 E-value=1.1e+02 Score=23.65 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccC
Q 043580 126 MIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLG 169 (665)
Q Consensus 126 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 169 (665)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444445555566666655544444444444444443333
No 356
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.64 E-value=2.2e+02 Score=22.93 Aligned_cols=58 Identities=7% Similarity=0.000 Sum_probs=28.5
Q ss_pred HHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCC
Q 043580 411 VDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN--SITLNDNLSAAIIDMYAKCGS 469 (665)
Q Consensus 411 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 469 (665)
.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..+..--++.+...|-
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455554332 23444444444555556666666555 444454444444455555553
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.50 E-value=5.1e+02 Score=28.34 Aligned_cols=52 Identities=6% Similarity=0.027 Sum_probs=34.1
Q ss_pred HHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhH
Q 043580 95 MISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMR 147 (665)
Q Consensus 95 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 147 (665)
++..+...|..+-|.++....+. +...--.+..+|...|++++|..+|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45556667777777776655554 33333456677778888888888887754
No 358
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.49 E-value=65 Score=31.47 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+++.+|..+...+++.+|.+.+..+..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 355666666666666666666666544
No 359
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.35 E-value=3.8e+02 Score=23.19 Aligned_cols=48 Identities=25% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHh-----ccCCCCCchHHHH---H-HHHHhcCChhHHHHHHHHHHhC
Q 043580 606 VEVGERAAKSLA-----GLQPSHGPSRVLL---S-NIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 606 ~~~A~~~~~~~~-----~~~p~~~~~~~~l---~-~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+.|...|+++. ++.|.+|.-+-.. + ..|--.|+.++|.++-+++.+.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456777777774 4677777532211 1 1244579999998887777653
No 360
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.25 E-value=66 Score=23.00 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=18.8
Q ss_pred cCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCC
Q 043580 71 CGLISQAKSMFDSCSTLDPVACNIMISGYIRNDR 104 (665)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 104 (665)
....+.|..+++.+....+..|..++.++.+.+.
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 4455555555555555555555555555555444
No 361
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.14 E-value=1.1e+02 Score=19.63 Aligned_cols=24 Identities=21% Similarity=0.071 Sum_probs=15.7
Q ss_pred hhcCChHHHHHHHHHhHHcCCCCC
Q 043580 131 AQNDCWREALEVFRDMRILGVIPN 154 (665)
Q Consensus 131 ~~~~~~~~a~~~~~~m~~~g~~p~ 154 (665)
...|+.+.|++.|-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 345677777777777766665554
No 362
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.89 E-value=96 Score=24.22 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=13.7
Q ss_pred HHHHhhcCChHHHHHHHHHhHHcCCCCCHhhH
Q 043580 127 IMGFAQNDCWREALEVFRDMRILGVIPNEVTL 158 (665)
Q Consensus 127 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 158 (665)
+..+...+..-.|.++++.+.+.+...+..|.
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTV 51 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTV 51 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHH
Confidence 33333333344445555555444433344333
No 363
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.49 E-value=4.6e+02 Score=23.79 Aligned_cols=278 Identities=9% Similarity=-0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCchHHHHHHhhcCCCCcchhh---HHHHHHHhcCChhhHHHhhhcCCCCCcc--cHHHHHHHHhhcCCh
Q 043580 62 NSLINLYAKCGLISQAKSMFDSCSTLDPVACN---IMISGYIRNDRLNDAREVFDKTPIKCCV--SYTSMIMGFAQNDCW 136 (665)
Q Consensus 62 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~ 136 (665)
++++..-++.|+++.++.+++....+|...-. +-+..-++.|+.+-+.-+++.-..++.. .....+......+..
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 105 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSV 105 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccc
Q ss_pred HHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHH------------HHHHHHhccC
Q 043580 137 REALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIIST------------NLLNMYCVCS 204 (665)
Q Consensus 137 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g 204 (665)
.....+...-...... |..-++.+..++.... .++...+.+.|..++..... +.+...+..|
T Consensus 106 ~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 106 KLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred hhhHHhhhccchhhhh-ccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Q ss_pred CHHHHHHHHhh------ccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 205 SLVEARSLFDE------MKERNIVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 205 ~~~~a~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
+.+-+..++++ .......+.-.........+..+...+++-+... .....-.+.+...+..|..+.+..++
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch
Q 043580 276 RAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI 353 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 353 (665)
..-...--..|..-.+.|..++.... .++.+.+++.|..++... .+...++.|+.+.+.-+++.|-.||.
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred HhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHHCcCCCCC
No 364
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.34 E-value=2.2e+02 Score=20.09 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=30.4
Q ss_pred hcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChH
Q 043580 101 RNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWR 137 (665)
Q Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 137 (665)
.....++|..+++.+...+..+|..++.++...+...
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 3566788999999998888889999999998877543
No 365
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.95 E-value=4.3e+02 Score=23.28 Aligned_cols=48 Identities=23% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHh-----ccCCCCCchHHHHH----HHHHhcCChhHHHHHHHHHHhC
Q 043580 606 VEVGERAAKSLA-----GLQPSHGPSRVLLS----NIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 606 ~~~A~~~~~~~~-----~~~p~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+.|...|+++. ++.|.+|.-+-... ..|--.++.++|.++-+++-+.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 466677777764 46777775322111 1244579999998887777553
No 366
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=20.60 E-value=3.2e+02 Score=21.57 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=39.2
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhcC
Q 043580 29 ALRYCSAHIAVSQGQQIHSLIFKSGLESNTF--IQNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRND 103 (665)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~ 103 (665)
.+..+++.|+.+.+..+ ++.|..++.. .-.+.+...+..|+.+.+..+++.....+ ....+.| ...+..|
T Consensus 17 ~l~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~ 91 (169)
T 2y1l_E 17 KLLEAARAGRDDEVRIL----MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL-RLAALFG 91 (169)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTT
T ss_pred hHHHHHHcCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcC
Confidence 34444555666554443 4445544322 11234445556677777777776644332 2222222 2334455
Q ss_pred ChhhHHHhhhc
Q 043580 104 RLNDAREVFDK 114 (665)
Q Consensus 104 ~~~~A~~~~~~ 114 (665)
+.+-+.-+++.
T Consensus 92 ~~~~~~~Ll~~ 102 (169)
T 2y1l_E 92 HLEIVEVLLKN 102 (169)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 65555555543
No 367
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.37 E-value=1.1e+02 Score=20.97 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=13.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 043580 629 LLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.++.=|+..|+|+.|..+|+.+++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 344445556666666666655543
Done!