BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043582
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 365 WLPVNSLEGTSLNEGEINSNPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTC 424
++P + G SL E +C D F+PCGH C C + + C
Sbjct: 274 YIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK----C 329
Query: 425 PIC 427
PIC
Sbjct: 330 PIC 332
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 283 VKLSYGPRWITYFAGLGAMTI--------LMFLAFRYCNMCRTTSGDGTGFQATDRGSQS 334
V++ +GP +F+ LG + LM +Y R ++G G F T ++
Sbjct: 37 VQMVHGP---PFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEW 93
Query: 335 PPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSLNEGEINSNP 385
L++ KD+ + + SYD + D + LE +L SLE ++ +++P
Sbjct: 94 KNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADP 144
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 283 VKLSYGPRWITYFAGLGAMTI--------LMFLAFRYCNMCRTTSGDGTGFQATDRGSQS 334
V++ +GP +F+ LG + LM +Y R ++G G F T ++
Sbjct: 35 VQMVHGP---PFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEW 91
Query: 335 PPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSLNEGEINSNP 385
L++ KD+ + + SYD + D + LE +L SLE ++ +++P
Sbjct: 92 KNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADP 142
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 283 VKLSYGPRWITYFAGLGAMTI--------LMFLAFRYCNMCRTTSGDGTGFQATDRGSQS 334
V++ +GP +F+ LG + LM +Y R ++G G F T ++
Sbjct: 36 VQMVHGP---PFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEW 92
Query: 335 PPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSLNEGEINSNP 385
L++ KD+ + + SYD + D + LE +L SLE ++ +++P
Sbjct: 93 KNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADP 143
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 391 ICCDAPRDCFFL--PCGHCAGCFTCGTRIAEEGGTCPIC 427
+C PRD + GH CF C R+ + G +CPIC
Sbjct: 12 LCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPIC 50
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 283 VKLSYGPRWITYFAGLGAMTI--------LMFLAFRYCNMCRTTSGDGTGFQATDRGSQS 334
V++ +GP +F+ LG + LM +Y R ++G G F T ++
Sbjct: 36 VQMVHGP---PFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEW 92
Query: 335 PPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSLNEGEINSNP 385
L++ KD+ + + SY+ + D + LE +L SLE ++ +++P
Sbjct: 93 KKLIAVKDEAVLNINKSYEEMFRDTEGLEFFLGWGSLESKNVVNVRESADP 143
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 388 LQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPIC 427
L ++CC+ + F PCGH C +C ++ +CP+C
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVC 55
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPIC 427
IC D F+PCGH C C AE CP+C
Sbjct: 30 ICMDRNIAIVFVPCGHLVTCKQC----AEAVDKCPMC 62
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 390 VICCDAPRDCFFL--PCGHCAGCFTCGTRIAEEGGTCPIC 427
VIC P++ + GH CFTC ++ + CP+C
Sbjct: 11 VICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVC 50
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPIC 427
IC D F+PCGH C C AE CP+C
Sbjct: 29 ICMDRNIAIVFVPCGHLVTCKQC----AEAVDKCPMC 61
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPIC 427
IC D F+PCGH C C AE CP+C
Sbjct: 29 ICMDRNIAIVFVPCGHLVTCKQC----AEAVDKCPMC 61
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 32.7 bits (73), Expect = 0.43, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 390 VICCDAPRDCFFL--PCGHCAGCFTCGTRIAEEGGTCPIC 427
VIC P++ + GH CFTC ++ + CP+C
Sbjct: 12 VICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVC 51
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 275 GTSSAKWYVKLSYGPRWITYFAGLGAMTI--------LMFLAFRYCNMCRTTSGDGTGFQ 326
G A V+ S+GP ++A LG + LM +Y + R ++G G F
Sbjct: 28 GKRVAVVDVQTSHGP---PFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFD 84
Query: 327 ATDRGSQSPPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSLNEGEINSNPR 386
+ + L++ K++ + SY+ + +D + L+ +L SLE ++ ++P+
Sbjct: 85 GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPK 144
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 275 GTSSAKWYVKLSYGPRWITYFAGLGAMTI--------LMFLAFRYCNMCRTTSGDGTGFQ 326
G A V+ S+GP ++A LG + LM +Y + R ++G G F
Sbjct: 31 GKRVAVVDVQTSHGP---PFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFD 87
Query: 327 ATDRGSQSPPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSLNEGEINSNPR 386
+ + L++ K++ + SY+ + +D + L+ +L SLE ++ ++P+
Sbjct: 88 GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPK 147
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPIC 427
+C D F+PCGH C C + + CPIC
Sbjct: 29 VCMDKEVSIVFIPCGHLVVCKDCAPSLRK----CPIC 61
>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
Length = 515
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 233 NVLVYNASKAYYRXXXXXXXXXXXXDPLGTTSAILTSPGPTKGTSSAKWYVKLSYGPR 290
N L+Y+ +A++ D G +S ++ S G + S +W+VKL+ GP+
Sbjct: 358 NPLIYDFGRAHF-LQNQMSVMYELLDLAGRSSLMIPSEGQWDDSQSGQWFVKLNNGPK 414
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 379 GEINSNPRHLQ-----VICCDAPRDCFFLPCGH--CAGCFTCGTRIAEEGGTCPIC 427
G + + R LQ +C D F+PCGH CA C A CPIC
Sbjct: 1 GSVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAEC-------APGLQLCPIC 49
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPIC 427
IC + +D PCGH C +C T E EG CP C
Sbjct: 337 ICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFC 373
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPIC 427
IC + +D PCGH C +C T E EG CP C
Sbjct: 339 ICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFC 375
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPIC 427
IC + +D PCGH C +C T E EG CP C
Sbjct: 337 ICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFC 373
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPIC 427
IC + +D PCGH C +C T E EG CP C
Sbjct: 339 ICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFC 375
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 391 ICCDAPRDCFFLPCGH--CAGCFTCGTRIAEEGGTCPIC 427
IC + +D PCGH C C T +G CP C
Sbjct: 31 ICAENDKDVKIEPCGHLMCTSCLTAWQE--SDGQGCPFC 67
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 402 LPCGHCAGCFTCGTRIAEEGGTCPIC 427
LPC H A C+ C TR + TCP+C
Sbjct: 22 LPCLH-AFCYVCITRWIRQNPTCPLC 46
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With
5-Bromouracil
Length = 268
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 260 LGTTSAILTSPGPTKGTSSAKWYVKLSYGPRWITYFAGLGA 300
+GT A PG SS++W L P W + A + A
Sbjct: 9 MGTLEAQTQGPGSMMSVSSSRWLAGLITNPEWRDFLAPITA 49
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 391 ICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPIC 427
IC + +D PCGH C +C T E +G CP C
Sbjct: 343 ICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFC 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,376,317
Number of Sequences: 62578
Number of extensions: 477369
Number of successful extensions: 788
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 29
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)