Query 043582
Match_columns 440
No_of_seqs 274 out of 1238
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4275 Predicted E3 ubiquitin 99.8 1.1E-21 2.5E-26 192.6 -1.4 204 137-440 147-350 (350)
2 KOG4172 Predicted E3 ubiquitin 99.3 1.5E-13 3.3E-18 105.3 -2.0 52 388-439 9-61 (62)
3 PF13920 zf-C3HC4_3: Zinc fing 99.3 2E-12 4.3E-17 96.7 3.2 48 387-434 3-50 (50)
4 KOG4265 Predicted E3 ubiquitin 99.2 5.7E-12 1.2E-16 127.7 4.0 56 384-439 288-343 (349)
5 KOG1571 Predicted E3 ubiquitin 99.2 9E-13 2E-17 133.6 -3.1 289 77-439 62-354 (355)
6 KOG0317 Predicted E3 ubiquitin 98.8 5.4E-09 1.2E-13 103.8 6.0 49 386-435 239-287 (293)
7 PLN03208 E3 ubiquitin-protein 98.6 3E-08 6.4E-13 94.2 4.8 52 386-438 18-87 (193)
8 KOG4628 Predicted E3 ubiquitin 98.6 1.7E-07 3.8E-12 95.9 9.4 47 387-434 230-280 (348)
9 KOG0823 Predicted E3 ubiquitin 98.6 6.6E-08 1.4E-12 93.6 5.3 54 384-438 45-103 (230)
10 PHA02929 N1R/p28-like protein; 98.5 8.3E-08 1.8E-12 94.0 4.4 53 386-439 174-234 (238)
11 PF13923 zf-C3HC4_2: Zinc fing 98.5 6.9E-08 1.5E-12 68.7 2.4 38 389-427 1-39 (39)
12 PF13639 zf-RING_2: Ring finge 98.4 1.3E-07 2.9E-12 68.7 1.9 40 388-428 2-44 (44)
13 KOG0320 Predicted E3 ubiquitin 98.4 3.1E-07 6.8E-12 86.0 4.8 54 384-438 129-186 (187)
14 cd00162 RING RING-finger (Real 98.2 1.5E-06 3.2E-11 61.0 2.9 43 388-431 1-45 (45)
15 PF14634 zf-RING_5: zinc-RING 98.1 2E-06 4.2E-11 62.9 2.8 40 389-429 2-44 (44)
16 smart00184 RING Ring finger. E 98.1 2.7E-06 5.9E-11 57.5 2.8 38 389-427 1-39 (39)
17 KOG2164 Predicted E3 ubiquitin 98.1 1.8E-06 3.9E-11 91.6 2.9 52 386-438 186-244 (513)
18 smart00504 Ubox Modified RING 98.1 2.9E-06 6.4E-11 65.2 3.2 45 387-432 2-46 (63)
19 KOG1785 Tyrosine kinase negati 98.1 1.3E-06 2.8E-11 90.3 1.3 52 385-437 368-421 (563)
20 PF15227 zf-C3HC4_4: zinc fing 98.1 3.2E-06 7E-11 61.6 3.0 38 389-427 1-42 (42)
21 KOG1100 Predicted E3 ubiquitin 98.1 1.4E-06 3E-11 83.8 1.4 46 389-438 161-206 (207)
22 PHA02926 zinc finger-like prot 98.0 2E-06 4.3E-11 83.4 2.3 49 387-436 171-234 (242)
23 PF00097 zf-C3HC4: Zinc finger 98.0 3E-06 6.6E-11 60.3 2.4 38 389-427 1-41 (41)
24 TIGR00599 rad18 DNA repair pro 97.9 5.4E-06 1.2E-10 86.7 2.8 48 385-433 25-72 (397)
25 COG5243 HRD1 HRD ubiquitin lig 97.8 6.9E-06 1.5E-10 84.4 2.0 48 383-431 284-344 (491)
26 COG5574 PEX10 RING-finger-cont 97.8 9.2E-06 2E-10 80.3 1.8 46 386-432 215-262 (271)
27 PF13445 zf-RING_UBOX: RING-ty 97.6 3.4E-05 7.3E-10 56.9 1.9 35 389-425 1-43 (43)
28 KOG0978 E3 ubiquitin ligase in 97.6 1.3E-05 2.8E-10 88.5 -0.5 52 386-438 643-697 (698)
29 PF12678 zf-rbx1: RING-H2 zinc 97.6 6.9E-05 1.5E-09 60.7 3.6 40 388-428 21-73 (73)
30 KOG2177 Predicted E3 ubiquitin 97.5 2.8E-05 6.1E-10 72.7 1.2 44 385-429 12-55 (386)
31 KOG4692 Predicted E3 ubiquitin 97.5 4.6E-05 1E-09 78.1 2.1 50 384-434 420-469 (489)
32 KOG0824 Predicted E3 ubiquitin 97.4 5.8E-05 1.3E-09 75.9 1.8 47 387-434 8-55 (324)
33 PF04564 U-box: U-box domain; 97.3 0.00027 5.8E-09 57.0 3.6 48 385-433 3-51 (73)
34 COG5432 RAD18 RING-finger-cont 97.2 0.00014 3.1E-09 73.0 1.9 48 385-433 24-71 (391)
35 KOG0287 Postreplication repair 97.2 0.00012 2.6E-09 74.9 1.2 47 386-433 23-69 (442)
36 KOG0802 E3 ubiquitin ligase [P 97.2 0.00012 2.6E-09 79.4 1.2 46 385-431 290-340 (543)
37 COG5540 RING-finger-containing 97.2 0.00021 4.6E-09 72.1 2.5 45 387-432 324-372 (374)
38 COG5236 Uncharacterized conser 97.2 0.00029 6.2E-09 72.3 3.4 52 383-435 58-111 (493)
39 PF14447 Prok-RING_4: Prokaryo 96.8 0.00043 9.4E-09 53.7 1.1 45 386-433 7-51 (55)
40 KOG4159 Predicted E3 ubiquitin 96.4 0.0014 3E-08 69.0 1.9 49 384-433 82-130 (398)
41 KOG1039 Predicted E3 ubiquitin 96.2 0.0022 4.7E-08 66.3 1.6 51 385-436 160-225 (344)
42 KOG0828 Predicted E3 ubiquitin 95.9 0.003 6.5E-08 67.5 1.3 50 383-433 568-635 (636)
43 TIGR00570 cdk7 CDK-activating 95.8 0.0065 1.4E-07 62.0 3.0 30 403-433 25-55 (309)
44 COG5152 Uncharacterized conser 95.7 0.005 1.1E-07 59.3 1.7 48 386-434 196-243 (259)
45 KOG0311 Predicted E3 ubiquitin 95.6 0.0014 3.1E-08 67.4 -2.3 48 386-434 43-92 (381)
46 KOG0826 Predicted E3 ubiquitin 95.3 0.0099 2.1E-07 60.9 2.5 60 378-438 292-354 (357)
47 PF14835 zf-RING_6: zf-RING of 95.3 0.007 1.5E-07 48.5 1.1 42 387-431 8-50 (65)
48 KOG2879 Predicted E3 ubiquitin 95.2 0.014 3.1E-07 58.5 2.9 48 385-433 238-288 (298)
49 KOG1813 Predicted E3 ubiquitin 95.0 0.012 2.7E-07 59.4 1.9 51 384-435 239-289 (313)
50 PF14570 zf-RING_4: RING/Ubox 94.7 0.016 3.6E-07 43.9 1.5 42 389-431 1-47 (48)
51 PF12861 zf-Apc11: Anaphase-pr 94.6 0.029 6.3E-07 47.3 2.9 32 400-432 48-82 (85)
52 KOG1001 Helicase-like transcri 93.7 0.029 6.3E-07 62.8 1.5 45 387-433 455-501 (674)
53 KOG0825 PHD Zn-finger protein 93.5 0.018 3.9E-07 64.5 -0.5 51 385-436 122-175 (1134)
54 KOG3039 Uncharacterized conser 93.1 0.065 1.4E-06 53.3 2.7 48 385-433 220-271 (303)
55 PF04641 Rtf2: Rtf2 RING-finge 93.0 0.08 1.7E-06 52.5 3.3 48 384-433 111-162 (260)
56 KOG0297 TNF receptor-associate 92.7 0.051 1.1E-06 57.1 1.4 48 386-434 21-69 (391)
57 KOG2932 E3 ubiquitin ligase in 92.6 0.035 7.6E-07 56.7 0.1 47 386-436 90-138 (389)
58 KOG1002 Nucleotide excision re 91.9 0.066 1.4E-06 58.1 1.0 47 384-431 534-585 (791)
59 KOG1814 Predicted E3 ubiquitin 91.8 0.076 1.6E-06 56.0 1.4 45 384-429 182-237 (445)
60 smart00744 RINGv The RING-vari 91.6 0.14 3.1E-06 38.5 2.4 40 388-428 1-49 (49)
61 COG5175 MOT2 Transcriptional r 91.0 0.12 2.6E-06 53.5 1.8 46 387-433 15-65 (480)
62 PF07800 DUF1644: Protein of u 90.8 0.28 6E-06 45.9 3.8 19 387-405 3-21 (162)
63 KOG3002 Zn finger protein [Gen 90.7 0.24 5.2E-06 50.6 3.7 47 384-434 46-93 (299)
64 KOG3842 Adaptor protein Pellin 90.7 0.25 5.4E-06 50.8 3.8 49 383-433 338-415 (429)
65 KOG0804 Cytoplasmic Zn-finger 90.6 0.17 3.6E-06 54.0 2.5 45 384-431 173-221 (493)
66 COG5220 TFB3 Cdk activating ki 90.1 0.075 1.6E-06 52.7 -0.5 48 385-433 9-65 (314)
67 PF03854 zf-P11: P-11 zinc fin 89.0 0.3 6.5E-06 37.2 2.1 46 388-435 4-49 (50)
68 KOG2660 Locus-specific chromos 88.4 0.11 2.4E-06 53.4 -0.8 52 385-437 14-66 (331)
69 KOG1734 Predicted RING-contain 87.8 0.23 5E-06 50.0 1.1 49 384-433 222-282 (328)
70 PF10272 Tmpp129: Putative tra 86.6 0.71 1.5E-05 48.3 3.9 45 387-431 272-350 (358)
71 PF05290 Baculo_IE-1: Baculovi 86.2 0.39 8.4E-06 43.8 1.5 47 388-435 82-135 (140)
72 PF04710 Pellino: Pellino; In 86.2 0.22 4.8E-06 52.4 0.0 52 386-438 328-410 (416)
73 KOG1428 Inhibitor of type V ad 84.7 0.52 1.1E-05 56.5 2.0 49 384-433 3484-3545(3738)
74 COG5219 Uncharacterized conser 84.1 0.48 1E-05 54.7 1.4 45 388-433 1471-1524(1525)
75 KOG2113 Predicted RNA binding 82.9 1 2.2E-05 46.4 3.0 51 385-437 342-392 (394)
76 COG5194 APC11 Component of SCF 82.8 1.1 2.5E-05 37.6 2.7 43 388-431 33-80 (88)
77 PF11789 zf-Nse: Zinc-finger o 82.4 1.3 2.9E-05 34.4 2.9 40 386-426 11-53 (57)
78 PF10342 GPI-anchored: Ser-Thr 78.6 12 0.00026 30.3 7.5 68 146-222 9-82 (93)
79 KOG2113 Predicted RNA binding 77.2 0.73 1.6E-05 47.4 -0.1 52 386-437 136-188 (394)
80 PF11793 FANCL_C: FANCL C-term 75.7 0.97 2.1E-05 36.4 0.2 45 387-432 3-66 (70)
81 PF01105 EMP24_GP25L: emp24/gp 72.7 1.2 2.5E-05 40.0 0.0 92 131-234 3-100 (183)
82 PF10367 Vps39_2: Vacuolar sor 71.8 1.9 4.1E-05 35.9 1.1 28 387-415 79-108 (109)
83 KOG4445 Uncharacterized conser 68.7 1.8 3.9E-05 44.4 0.4 45 387-432 116-186 (368)
84 KOG4185 Predicted E3 ubiquitin 67.7 3.3 7.2E-05 41.3 2.0 31 400-431 23-54 (296)
85 PHA03096 p28-like protein; Pro 66.5 3.2 6.9E-05 42.3 1.6 42 387-429 179-231 (284)
86 PHA02825 LAP/PHD finger-like p 65.6 5.8 0.00013 37.3 3.0 47 385-432 7-59 (162)
87 PF05883 Baculo_RING: Baculovi 65.2 3.3 7.2E-05 37.8 1.3 34 387-420 27-68 (134)
88 PF12273 RCR: Chitin synthesis 65.1 4.7 0.0001 35.8 2.3 18 290-307 1-18 (130)
89 KOG2930 SCF ubiquitin ligase, 64.7 3.8 8.3E-05 36.0 1.5 30 400-430 77-106 (114)
90 KOG3161 Predicted E3 ubiquitin 64.3 2.7 5.9E-05 47.0 0.7 39 387-429 12-54 (861)
91 KOG1940 Zn-finger protein [Gen 62.9 2.3 5.1E-05 43.1 -0.1 45 387-433 159-207 (276)
92 PF04216 FdhE: Protein involve 62.3 3.3 7.2E-05 41.6 0.8 52 385-437 171-227 (290)
93 COG5222 Uncharacterized conser 61.6 3.9 8.4E-05 42.1 1.2 43 387-430 275-319 (427)
94 KOG1941 Acetylcholine receptor 61.0 1.9 4.2E-05 45.7 -1.1 48 384-432 363-416 (518)
95 KOG3579 Predicted E3 ubiquitin 57.9 4.8 0.0001 41.2 1.1 33 386-419 268-304 (352)
96 KOG1493 Anaphase-promoting com 57.9 1.9 4.2E-05 36.0 -1.4 42 389-431 34-80 (84)
97 KOG2817 Predicted E3 ubiquitin 54.4 8.4 0.00018 40.9 2.2 51 387-438 335-393 (394)
98 KOG0298 DEAD box-containing he 54.2 3.5 7.5E-05 49.3 -0.7 47 385-432 1152-1199(1394)
99 PF06679 DUF1180: Protein of u 54.1 29 0.00062 32.8 5.5 31 285-316 91-121 (163)
100 PLN02189 cellulose synthase 53.7 9.4 0.0002 45.1 2.7 48 386-433 34-88 (1040)
101 PLN02436 cellulose synthase A 52.3 10 0.00022 45.0 2.6 48 386-433 36-90 (1094)
102 KOG2068 MOT2 transcription fac 51.3 9.8 0.00021 39.5 2.1 46 387-433 250-299 (327)
103 PHA02862 5L protein; Provision 51.0 11 0.00025 35.0 2.3 45 387-432 3-53 (156)
104 PF14569 zf-UDP: Zinc-binding 50.7 12 0.00027 31.3 2.2 47 386-433 9-63 (80)
105 PF12669 P12: Virus attachment 50.5 11 0.00023 29.6 1.7 23 294-316 2-25 (58)
106 PF08114 PMP1_2: ATPase proteo 49.9 13 0.00027 27.6 1.9 28 289-316 10-37 (43)
107 KOG3637 Vitronectin receptor, 49.7 80 0.0017 37.8 9.4 39 149-187 895-933 (1030)
108 KOG0827 Predicted E3 ubiquitin 48.4 12 0.00026 39.8 2.3 31 401-432 23-56 (465)
109 KOG3899 Uncharacterized conser 47.6 11 0.00024 38.8 1.8 22 410-431 330-364 (381)
110 PF10146 zf-C4H2: Zinc finger- 47.5 11 0.00023 37.4 1.6 26 407-432 194-219 (230)
111 KOG4362 Transcriptional regula 46.9 5.2 0.00011 45.2 -0.7 46 387-433 22-70 (684)
112 PRK03564 formate dehydrogenase 46.9 11 0.00023 39.0 1.6 46 385-430 186-235 (309)
113 PF07191 zinc-ribbons_6: zinc- 46.4 3.2 6.9E-05 34.0 -1.8 43 387-435 2-44 (70)
114 PF12768 Rax2: Cortical protei 46.2 1.3E+02 0.0027 30.7 9.1 26 291-316 233-258 (281)
115 PLN02638 cellulose synthase A 45.4 15 0.00032 43.7 2.6 48 386-433 17-71 (1079)
116 PF12124 Nsp3_PL2pro: Coronavi 43.0 10 0.00022 29.8 0.5 21 136-158 12-42 (66)
117 TIGR01562 FdhE formate dehydro 42.9 8 0.00017 39.8 -0.0 46 385-430 183-233 (305)
118 COG5183 SSM4 Protein involved 42.0 19 0.00042 41.6 2.7 48 385-432 11-66 (1175)
119 KOG3053 Uncharacterized conser 41.5 17 0.00037 36.8 2.0 51 384-434 18-84 (293)
120 KOG4218 Nuclear hormone recept 41.2 16 0.00034 38.5 1.8 24 387-414 16-39 (475)
121 PLN02400 cellulose synthase 40.5 16 0.00036 43.3 2.0 48 386-433 36-90 (1085)
122 PF02891 zf-MIZ: MIZ/SP-RING z 39.2 19 0.00041 27.2 1.5 42 388-430 4-50 (50)
123 KOG1692 Putative cargo transpo 38.9 2.3E+02 0.0051 27.7 9.1 92 129-233 20-113 (201)
124 cd05721 IgV_CTLA-4 Immunoglobu 38.6 2E+02 0.0043 25.7 8.1 85 149-260 13-98 (115)
125 KOG4451 Uncharacterized conser 38.0 17 0.00037 36.3 1.4 25 409-433 251-275 (286)
126 KOG4550 Predicted membrane pro 37.3 36 0.00079 36.9 3.7 23 259-285 531-553 (606)
127 KOG1812 Predicted E3 ubiquitin 36.9 14 0.0003 39.1 0.6 32 387-419 147-182 (384)
128 PF00558 Vpu: Vpu protein; In 36.5 28 0.0006 29.4 2.2 8 309-316 27-34 (81)
129 PLN02915 cellulose synthase A 36.4 28 0.0006 41.4 3.0 49 385-433 14-69 (1044)
130 cd05758 Ig5_KIRREL3-like Fifth 35.3 2E+02 0.0044 23.4 7.3 19 143-161 10-28 (98)
131 PF12904 Collagen_bind_2: Puta 34.6 55 0.0012 28.0 3.8 81 197-285 11-91 (93)
132 PF13240 zinc_ribbon_2: zinc-r 34.5 9.9 0.00021 24.5 -0.6 22 410-431 2-23 (23)
133 PF08611 DUF1774: Fungal prote 34.4 49 0.0011 28.8 3.4 46 288-338 51-96 (97)
134 KOG1815 Predicted E3 ubiquitin 33.7 19 0.00041 38.5 1.1 32 387-419 71-103 (444)
135 cd04971 Ig_TrKABC_d5 Fifth dom 32.4 1.2E+02 0.0025 24.5 5.3 68 186-260 10-81 (81)
136 PF01299 Lamp: Lysosome-associ 32.2 5.5E+02 0.012 26.0 15.4 18 143-160 120-137 (306)
137 PF12906 RINGv: RING-variant d 31.4 31 0.00068 25.6 1.6 39 389-427 1-47 (47)
138 PRK09774 fec operon regulator 30.6 2.6E+02 0.0056 28.5 8.6 66 123-203 112-178 (319)
139 PF04423 Rad50_zn_hook: Rad50 30.5 21 0.00046 27.0 0.6 13 421-433 20-32 (54)
140 PF04710 Pellino: Pellino; In 29.8 17 0.00038 38.7 0.0 21 141-161 74-94 (416)
141 PF06697 DUF1191: Protein of u 29.7 93 0.002 31.8 5.1 12 239-250 171-182 (278)
142 KOG2114 Vacuolar assembly/sort 28.3 17 0.00037 42.1 -0.4 16 254-269 257-272 (933)
143 KOG3113 Uncharacterized conser 27.9 48 0.001 33.6 2.6 46 385-433 110-159 (293)
144 PF11694 DUF3290: Protein of u 27.8 78 0.0017 29.4 3.9 29 289-317 15-43 (149)
145 COG4306 Uncharacterized protei 27.6 27 0.00058 32.0 0.8 24 408-434 29-52 (160)
146 PF06363 Picorna_P3A: Picornav 26.3 67 0.0015 27.8 2.9 31 285-315 62-95 (100)
147 KOG3842 Adaptor protein Pellin 26.3 42 0.00091 35.1 2.0 38 399-437 317-356 (429)
148 PF07975 C1_4: TFIIH C1-like d 25.9 42 0.00091 25.9 1.4 25 403-428 26-50 (51)
149 PF01102 Glycophorin_A: Glycop 25.7 91 0.002 28.1 3.8 15 291-305 66-80 (122)
150 KOG0825 PHD Zn-finger protein 25.6 35 0.00076 39.5 1.4 47 387-434 100-156 (1134)
151 PF02318 FYVE_2: FYVE-type zin 24.6 15 0.00032 32.2 -1.4 44 386-430 54-103 (118)
152 PRK01844 hypothetical protein; 24.5 1E+02 0.0023 25.5 3.6 27 290-316 7-33 (72)
153 KOG3799 Rab3 effector RIM1 and 24.3 36 0.00077 31.5 0.9 45 384-431 63-117 (169)
154 PF09972 DUF2207: Predicted me 24.2 8.1E+02 0.018 25.5 11.2 12 150-161 97-108 (511)
155 KOG0309 Conserved WD40 repeat- 24.2 39 0.00085 39.0 1.4 39 387-426 1029-1069(1081)
156 PF14316 DUF4381: Domain of un 23.2 86 0.0019 28.3 3.3 32 282-314 16-47 (146)
157 PF10083 DUF2321: Uncharacteri 23.2 38 0.00083 31.9 0.9 24 408-434 29-52 (158)
158 PRK11677 hypothetical protein; 23.0 86 0.0019 28.7 3.2 26 290-315 2-27 (134)
159 PF13908 Shisa: Wnt and FGF in 22.9 1.2E+02 0.0025 28.3 4.1 16 293-308 83-98 (179)
160 PF01102 Glycophorin_A: Glycop 22.7 94 0.002 28.0 3.3 25 286-310 65-89 (122)
161 cd05898 Ig5_KIRREL3 Fifth immu 22.0 2.8E+02 0.0061 23.6 6.0 18 143-160 10-27 (98)
162 KOG4818 Lysosomal-associated m 21.7 2.2E+02 0.0047 30.3 6.1 144 138-288 161-328 (362)
163 KOG2807 RNA polymerase II tran 20.8 68 0.0015 33.7 2.2 43 387-430 331-376 (378)
164 cd05870 Ig5_NCAM-2 Fifth immun 20.6 4.4E+02 0.0096 21.3 6.8 16 146-161 13-28 (98)
165 PF03351 DOMON: DOMON domain; 20.6 1.6E+02 0.0034 24.9 4.2 30 188-217 4-35 (124)
166 TIGR00540 hemY_coli hemY prote 20.5 2.1E+02 0.0045 29.8 5.9 45 259-312 22-66 (409)
No 1
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-21 Score=192.60 Aligned_cols=204 Identities=22% Similarity=0.255 Sum_probs=140.2
Q ss_pred CCcceeEEEeecCCeeEEEEEEecCCCCCeEEEEEeccccccccccCCCCCCcceeeeEeeCCceEEEEEeccCceEEEE
Q 043582 137 DGHKEWLYFLNKGSKLEISYNVKSPSSAPLSLVIARGGESLEDWIDHPSCPKTTLSWNILYGSGKIQQKISKSSDYYIAV 216 (440)
Q Consensus 137 ~s~k~w~y~LNkGS~i~isy~v~~~~~~~l~lvi~~G~~~~~~w~~~p~~p~~tlsw~~i~g~g~~~~~i~~~~~Yyiav 216 (440)
.|+|.|..++|+|+..+.+|+ ..++.++|++|..++++|.++|+-|.++++|+.+.|+ .+-+|.
T Consensus 147 ~S~ks~~~~~~~~f~r~~~ss-----~vap~~~~~s~~~~~~~~~~~~~~~~~sq~qse~sq~--~eed~~--------- 210 (350)
T KOG4275|consen 147 RSKKSTRRRSDGYFNRRYHSS-----PVAPGGPGLSLGLSTLSEHPEHGLHPHSQRQSENSQM--SEEDIK--------- 210 (350)
T ss_pred hhhhcchhhcccceeeeeccC-----CCCCCCccccccccccccCCCCCCCchhhhhhhhccc--cccccc---------
Confidence 789999999999999998888 6678899999999999999999999999999943332 111111
Q ss_pred eecCccceeEEEEEEEeEEEEecccceeecccCCCceEEEeccCCCcEEEEcCCCCCCCCCCceeEEEeccchhHHHHHH
Q 043582 217 GNLNSQQVEMQLNFTMNVLVYNASKAYYRCSLGSGLCSLSLDPLGTTSAILTSPGPTKGTSSAKWYVKLSYGPRWITYFA 296 (440)
Q Consensus 217 ~Nln~~~v~v~l~~~i~~~~y~t~~a~~~cs~~~~~c~~~~~~~~~~~~vltsp~~~~~~~~d~w~v~lSy~~r~lt~I~ 296 (440)
.|... ++...-+++
T Consensus 211 ----------------------------------------------------~~~~e----~~~~eded~---------- 224 (350)
T KOG4275|consen 211 ----------------------------------------------------TPTIE----FSPTEDEDI---------- 224 (350)
T ss_pred ----------------------------------------------------Ccccc----cCchhhhhh----------
Confidence 11111 111111222
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCCCCcccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCccCCcc
Q 043582 297 GLGAMTILMFLAFRYCNMCRTTSGDGTGFQATDRGSQSPPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSL 376 (440)
Q Consensus 297 Gl~~l~vL~~~l~R~~~k~re~~~e~~~~~l~~~~~eR~pll~~k~dd~ss~g~s~ds~~~Deed~Ee~l~~~s~e~~~~ 376 (440)
.+.+..+..++++.+.. .....+......+++|...++++..+|+++-+....++...+.+... ..++...
T Consensus 225 -----sd~~~~~~~~~~r~~ls---d~edl~d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~~-~g~~~~~ 295 (350)
T KOG4275|consen 225 -----SDFMPVAIQFCRRASLS---DLEDLLDEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKGN-DGEQHSR 295 (350)
T ss_pred -----hhhchhhhhhhhhcccC---ccccccccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhcc-ccccccc
Confidence 22233333444544432 11222333356677888889999999988776655555444433321 1111111
Q ss_pred cccccCCCCccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeEC
Q 043582 377 NEGEINSNPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFTV 440 (440)
Q Consensus 377 ~~~E~~~~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~v 440 (440)
. ...+.+|.||||.|+|++||+|||++.|..|..+|. .|||||+.|.++++||+|
T Consensus 296 s-----~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 296 S-----LATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIVRVVRIFRV 350 (350)
T ss_pred c-----hhHHHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHHHHHhhhcC
Confidence 1 122789999999999999999999999999999994 899999999999999986
No 2
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-13 Score=105.33 Aligned_cols=52 Identities=40% Similarity=0.917 Sum_probs=48.6
Q ss_pred ccccccccCcceEEecCCCccccHhhHHHHhc-cCCccccccccccceeEeeE
Q 043582 388 LQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 388 ~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~~virIf~ 439 (440)
+|.||++++.|.++.-|||+|+|++|..++++ ..+.||+||.+|+.+++.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 49999999999999999999999999999988 56899999999999998875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.28 E-value=2e-12 Score=96.67 Aligned_cols=48 Identities=42% Similarity=0.924 Sum_probs=43.0
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccce
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
..|.||++++++++++||||.++|..|+.++.+....||+||++|.++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 469999999999999999999999999999998889999999999864
No 4
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.7e-12 Score=127.71 Aligned_cols=56 Identities=32% Similarity=0.731 Sum_probs=50.5
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
+....|+||+++.||+++|||+|+|+|..|+..+.-+...|||||++|...+.|+.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 34567999999999999999999999999999998666789999999999988874
No 5
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9e-13 Score=133.58 Aligned_cols=289 Identities=20% Similarity=0.246 Sum_probs=157.2
Q ss_pred EeCCCCCcccccCcceEeeeEeeeccCCCCCCeEEEeecCCCCCCcccceeeeeEEEecCCCcceeEEEeecCCeeEEEE
Q 043582 77 QLGPHCSRPIHTNPLFVQSIKAQVLDRQTSSSLMLYGFHNSPPLDVEFTWTETHIAVVPDDGHKEWLYFLNKGSKLEISY 156 (440)
Q Consensus 77 ~lgp~~srl~~~~s~Fv~~i~v~~~~~~~~~g~~lYgf~~~p~l~~~~~w~~~~~~~v~~~s~k~w~y~LNkGS~i~isy 156 (440)
.+|+-.++-..+++.+|...+ |.+.----+.|-...-..|...+..-+....-++=.|||--++.. ...
T Consensus 62 ~~~~~~~~~~~~~~~~v~~v~----------gvv~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~q~~~-~~~ 130 (355)
T KOG1571|consen 62 IRGCAIARKETLRSLCVSNVP----------GVVQALTLEEPKGRRDGGGHWNANSKIFHEGGNEVPFFLRSQTTG-FAC 130 (355)
T ss_pred HhhcccccccchHHhhcccCC----------ceEEEeeeccceeeeccceeeccceeeccCCCcccceeeccCCcc-eee
Confidence 467888888888888887544 111111112344444456667777777777777777888777775 333
Q ss_pred EEecC-CCCCeEEEEEeccccccccccCCCCCCcceeeeEeeCCceEEEEEeccCceEEEEeecCccceeEEEEEEEeEE
Q 043582 157 NVKSP-SSAPLSLVIARGGESLEDWIDHPSCPKTTLSWNILYGSGKIQQKISKSSDYYIAVGNLNSQQVEMQLNFTMNVL 235 (440)
Q Consensus 157 ~v~~~-~~~~l~lvi~~G~~~~~~w~~~p~~p~~tlsw~~i~g~g~~~~~i~~~~~Yyiav~Nln~~~v~v~l~~~i~~~ 235 (440)
.++.. +...+.|-...+.+.|. |+.|- .+-. ..-+|..++-=.+-...+=.|. + ..
T Consensus 131 ~~~~s~~~~~~~l~l~~~~d~f~-----~s~p~--s~~~-------------~~~~~~sg~~~~~~~~~~~~l~--~-~~ 187 (355)
T KOG1571|consen 131 EVRVSKTLGRLFLPLNVVYDLFE-----PSDPC--SLVD-------------VGGGYHSGVRRGGFRETERVLP--L-GT 187 (355)
T ss_pred eeeeecceeeeeecceeeecccc-----ccCcc--eeee-------------cccccccceeeecccceEEeec--c-cc
Confidence 33332 23344444444444443 33332 1111 1112222221111111111111 1 11
Q ss_pred EEecccceeecccCCCceEEEec-cCCCcEEEEcCCCCCCCCCCceeEEEeccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 043582 236 VYNASKAYYRCSLGSGLCSLSLD-PLGTTSAILTSPGPTKGTSSAKWYVKLSYGPRWITYFAGLGAMTILMFLAFRYCNM 314 (440)
Q Consensus 236 ~y~t~~a~~~cs~~~~~c~~~~~-~~~~~~~vltsp~~~~~~~~d~w~v~lSy~~r~lt~I~Gl~~l~vL~~~l~R~~~k 314 (440)
+|.+-+-... .+.|.+.+. .+.+--.|..++ +.+-.++ .-++|+..++....++...++.|.+++.+++.+
T Consensus 188 ~~t~l~e~v~----d~~~~~r~~~~~~g~~~v~~s~-~d~LIsr---~g~~s~~~kv~~~~~~~~~~ills~~~~d~~le 259 (355)
T KOG1571|consen 188 RLTALGELVR----DGYCGVRVQPPMQGPLYVTKSA-ADRLISR---EGDLSFFVKVNGMVFGTLGVILLSFIVKDNYLE 259 (355)
T ss_pred ceeeeehhee----cCCCceEecCCccCcceeeccc-hhhHHHh---hccceeeeeecceeeeeeeEEeehHHHHHHHHH
Confidence 2222222111 122455554 455666666666 4432221 135678888889999999999999999998887
Q ss_pred --CcccCCCCCcccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCccCCcccccccCCCCccccccc
Q 043582 315 --CRTTSGDGTGFQATDRGSQSPPLLSHKDDGLSSWGSSYDSVSHDEQDLEDWLPVNSLEGTSLNEGEINSNPRHLQVIC 392 (440)
Q Consensus 315 --~re~~~e~~~~~l~~~~~eR~pll~~k~dd~ss~g~s~ds~~~Deed~Ee~l~~~s~e~~~~~~~E~~~~~~~~C~IC 392 (440)
++++ .....+.......|+.++++.... ...+- ++. -+.+......|+||
T Consensus 260 d~r~~r--~~l~k~~~~~~~~rae~~s~g~~g------tr~~~-~~~-------------------~~~~~~~p~lcVVc 311 (355)
T KOG1571|consen 260 DDRRQR--RELVKRVEDLATVRAELLSRGVRG------TRIQN-ENG-------------------TFRELPQPDLCVVC 311 (355)
T ss_pred HHHHHH--HHHHHhhhhhhhheeeeecccccc------ccccc-ccC-------------------cccccCCCCceEEe
Confidence 3322 111111122223333333221111 00000 000 01123445679999
Q ss_pred cccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 393 CDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 393 ld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
.+++.+++|+||||+|+|..|..++ .+||+||+.|..++++|.
T Consensus 312 l~e~~~~~fvpcGh~ccct~cs~~l----~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 312 LDEPKSAVFVPCGHVCCCTLCSKHL----PQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred cCCccceeeecCCcEEEchHHHhhC----CCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999 469999999999998875
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.4e-09 Score=103.79 Aligned_cols=49 Identities=27% Similarity=0.665 Sum_probs=44.4
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCcccccccccccee
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVR 435 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vi 435 (440)
...|.+|++++.+....||||. ||..|...+...+..||.||++.+...
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 3579999999999999999998 999999999998899999999986543
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.63 E-value=3e-08 Score=94.16 Aligned_cols=52 Identities=29% Similarity=0.634 Sum_probs=42.7
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhc----------------cCCccccccccccc--eeEee
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE----------------EGGTCPICRKKIKK--VRKIF 438 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~----------------~~~~CPICR~~I~~--virIf 438 (440)
...|.||++..++.++++|||. +|..|...+.. ....||+||.+|.. ++++|
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3579999999999999999997 89999987642 13589999999965 56665
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.7e-07 Score=95.92 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=35.2
Q ss_pred cccccccccCcce---EEecCCCccccHhhHHHHhcc-CCccccccccccce
Q 043582 387 HLQVICCDAPRDC---FFLPCGHCAGCFTCGTRIAEE-GGTCPICRKKIKKV 434 (440)
Q Consensus 387 ~~C~ICld~~rd~---v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~v 434 (440)
..|+||+|..+.. .+|||+|..+ ..|...|..+ +..||+|++.|.+-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH-~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFH-VNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchh-hccchhhHhhcCccCCCCCCcCCCC
Confidence 4799999977654 7799999854 5676665554 45699999988653
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.6e-08 Score=93.62 Aligned_cols=54 Identities=24% Similarity=0.576 Sum_probs=46.4
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhc---cCCccccccccc--cceeEee
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE---EGGTCPICRKKI--KKVRKIF 438 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~---~~~~CPICR~~I--~~virIf 438 (440)
.....|-||+|..+|.|+..|||+ ||..|.-+|.. ..+.||+|+..| +++++||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 455789999999999999999998 89999988876 346789999987 5688887
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.51 E-value=8.3e-08 Score=93.98 Aligned_cols=53 Identities=28% Similarity=0.499 Sum_probs=43.6
Q ss_pred ccccccccccCcc--------eEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 386 RHLQVICCDAPRD--------CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 386 ~~~C~ICld~~rd--------~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
...|+||++...+ .++.+|||. ||..|...+.+....||+||+++..+++..+
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence 3579999986433 366789996 9999999998888899999999998877543
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.49 E-value=6.9e-08 Score=68.72 Aligned_cols=38 Identities=39% Similarity=0.852 Sum_probs=33.2
Q ss_pred cccccccCcce-EEecCCCccccHhhHHHHhccCCccccc
Q 043582 389 QVICCDAPRDC-FFLPCGHCAGCFTCGTRIAEEGGTCPIC 427 (440)
Q Consensus 389 C~ICld~~rd~-v~lPCGH~~~C~~C~~~l~~~~~~CPIC 427 (440)
|+||++..++. ++++|||. +|..|+.++.+.+.+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999999 68999998 8999999988878899998
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.39 E-value=1.3e-07 Score=68.69 Aligned_cols=40 Identities=30% Similarity=0.649 Sum_probs=34.3
Q ss_pred ccccccccC---cceEEecCCCccccHhhHHHHhccCCcccccc
Q 043582 388 LQVICCDAP---RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICR 428 (440)
Q Consensus 388 ~C~ICld~~---rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR 428 (440)
.|+||++.. ..++.++|||. ||..|...+.+.+..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 599999865 46788999997 99999999998888999998
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.1e-07 Score=86.01 Aligned_cols=54 Identities=30% Similarity=0.598 Sum_probs=44.0
Q ss_pred CCccccccccccCcce--EEecCCCccccHhhHHHHhccCCcccccccccc--ceeEee
Q 043582 384 NPRHLQVICCDAPRDC--FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK--KVRKIF 438 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~--v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~--~virIf 438 (440)
.....|+|||+....- +-..|||+ ||..|+....+...+||+||++|+ .+.+||
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3447899999876554 44899997 999999999988899999998885 466666
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.16 E-value=1.5e-06 Score=60.97 Aligned_cols=43 Identities=37% Similarity=0.792 Sum_probs=34.7
Q ss_pred ccccccccCcceEE-ecCCCccccHhhHHHHhcc-CCccccccccc
Q 043582 388 LQVICCDAPRDCFF-LPCGHCAGCFTCGTRIAEE-GGTCPICRKKI 431 (440)
Q Consensus 388 ~C~ICld~~rd~v~-lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I 431 (440)
.|.||++...+.+. .+|||. +|..|...+.+. ...||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 39999998855544 459998 899999988775 67899999864
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.11 E-value=2e-06 Score=62.92 Aligned_cols=40 Identities=35% Similarity=0.720 Sum_probs=34.2
Q ss_pred cccccccC---cceEEecCCCccccHhhHHHHhccCCccccccc
Q 043582 389 QVICCDAP---RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRK 429 (440)
Q Consensus 389 C~ICld~~---rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~ 429 (440)
|.+|+... +...+++|||. +|..|+..+......||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 88998776 45788999997 899999999855579999985
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.07 E-value=2.7e-06 Score=57.53 Aligned_cols=38 Identities=39% Similarity=0.871 Sum_probs=33.8
Q ss_pred cccccccCcceEEecCCCccccHhhHHHHhc-cCCccccc
Q 043582 389 QVICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPIC 427 (440)
Q Consensus 389 C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~-~~~~CPIC 427 (440)
|.||++..++.+++||||. +|..|...+.+ ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 8899999999999999998 89999998876 45679987
No 17
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.8e-06 Score=91.57 Aligned_cols=52 Identities=29% Similarity=0.510 Sum_probs=44.8
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhcc-----CCccccccccccc--eeEee
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE-----GGTCPICRKKIKK--VRKIF 438 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~-----~~~CPICR~~I~~--virIf 438 (440)
...|+||+..+.-++.+.|||. ||..|..+++.. .+.||+||..|.. +..++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 4679999999999999999997 899999998874 3689999999976 66664
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.07 E-value=2.9e-06 Score=65.18 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=40.9
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhccCCcccccccccc
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
..|+||.+-.++.+..||||. +|..|...+.+....||+|++++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 369999999999999999997 899999999887789999999874
No 19
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.05 E-value=1.3e-06 Score=90.28 Aligned_cols=52 Identities=35% Similarity=0.728 Sum_probs=45.5
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhcc--CCccccccccccceeEe
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE--GGTCPICRKKIKKVRKI 437 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~--~~~CPICR~~I~~virI 437 (440)
.-.+|.||-++.+|+.+-||||+ +|..|...|+.. +..||.||..|++.-+|
T Consensus 368 TFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred hHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 44689999999999999999998 899999999853 57999999999886554
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.05 E-value=3.2e-06 Score=61.64 Aligned_cols=38 Identities=42% Similarity=0.787 Sum_probs=30.2
Q ss_pred cccccccCcceEEecCCCccccHhhHHHHhccC----Cccccc
Q 043582 389 QVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG----GTCPIC 427 (440)
Q Consensus 389 C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~----~~CPIC 427 (440)
|+||++-.++.+.++|||. ||..|..++++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999997 9999999998743 369987
No 21
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.4e-06 Score=83.85 Aligned_cols=46 Identities=26% Similarity=0.609 Sum_probs=42.6
Q ss_pred cccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEee
Q 043582 389 QVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIF 438 (440)
Q Consensus 389 C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf 438 (440)
|..|..+...++++||.|+++|..|...+ ..||+|+.++...+.+|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence 99999999999999999999999999874 57999999999988876
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.05 E-value=2e-06 Score=83.35 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=38.7
Q ss_pred cccccccccC---------cceEEecCCCccccHhhHHHHhccC------CccccccccccceeE
Q 043582 387 HLQVICCDAP---------RDCFFLPCGHCAGCFTCGTRIAEEG------GTCPICRKKIKKVRK 436 (440)
Q Consensus 387 ~~C~ICld~~---------rd~v~lPCGH~~~C~~C~~~l~~~~------~~CPICR~~I~~vir 436 (440)
.+|.||++.. +-.++.+|+|. ||..|...+.+.. ..||+||+....+.+
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 4699999852 23577899997 9999999998642 359999999887654
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.02 E-value=3e-06 Score=60.28 Aligned_cols=38 Identities=37% Similarity=0.807 Sum_probs=34.2
Q ss_pred cccccccCcceE-EecCCCccccHhhHHHHhc--cCCccccc
Q 043582 389 QVICCDAPRDCF-FLPCGHCAGCFTCGTRIAE--EGGTCPIC 427 (440)
Q Consensus 389 C~ICld~~rd~v-~lPCGH~~~C~~C~~~l~~--~~~~CPIC 427 (440)
|.||++...+.. +++|||. +|..|..++.+ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 899999999988 9999998 99999999887 45689998
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=5.4e-06 Score=86.70 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=42.4
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
....|.||++...+.+++||||. ||..|...+......||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34689999999999999999997 8999999988777789999998754
No 25
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.9e-06 Score=84.45 Aligned_cols=48 Identities=35% Similarity=0.639 Sum_probs=39.2
Q ss_pred CCCccccccccccC-------------cceEEecCCCccccHhhHHHHhccCCccccccccc
Q 043582 383 SNPRHLQVICCDAP-------------RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKI 431 (440)
Q Consensus 383 ~~~~~~C~ICld~~-------------rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I 431 (440)
.++++.|.||+|+. +...=+||||. +-..|...|..+..+|||||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 45567899999972 12255899996 88999999999889999999994
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=9.2e-06 Score=80.30 Aligned_cols=46 Identities=28% Similarity=0.639 Sum_probs=38.8
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHH-HhccC-Ccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTR-IAEEG-GTCPICRKKIK 432 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~-l~~~~-~~CPICR~~I~ 432 (440)
+..|.||++.+-+....||||+ ||..|.-. +...+ ..||.||+++.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 4569999999999999999997 89999988 54444 35999999874
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.58 E-value=3.4e-05 Score=56.89 Aligned_cols=35 Identities=31% Similarity=0.714 Sum_probs=21.3
Q ss_pred cccccccCcc----eEEecCCCccccHhhHHHHhccC----Cccc
Q 043582 389 QVICCDAPRD----CFFLPCGHCAGCFTCGTRIAEEG----GTCP 425 (440)
Q Consensus 389 C~ICld~~rd----~v~lPCGH~~~C~~C~~~l~~~~----~~CP 425 (440)
|+||.+ ..+ .+.|||||. +|..|..++.+.+ -+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcCCCCeeeCc
Confidence 889988 666 799999997 8999999998743 2566
No 28
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=1.3e-05 Score=88.49 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=43.6
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhc-cCCcccccccccc--ceeEee
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPICRKKIK--KVRKIF 438 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~--~virIf 438 (440)
...|++|.++++++++..|||+ ||..|...... ...+||.|...+. .+.+||
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred ceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 3579999999999999999996 99999877665 3479999999874 466665
No 29
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.56 E-value=6.9e-05 Score=60.69 Aligned_cols=40 Identities=33% Similarity=0.718 Sum_probs=32.0
Q ss_pred ccccccccC-------------cceEEecCCCccccHhhHHHHhccCCcccccc
Q 043582 388 LQVICCDAP-------------RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICR 428 (440)
Q Consensus 388 ~C~ICld~~-------------rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR 428 (440)
.|.||++.. ...+..+|||. |...|..++.+....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 499998754 23366799997 89999999999888999998
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.8e-05 Score=72.68 Aligned_cols=44 Identities=39% Similarity=0.699 Sum_probs=38.2
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRK 429 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~ 429 (440)
+...|.||++..++..++||||. +|..|...++...-.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 34679999999999999999997 899999998874458999994
No 31
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.6e-05 Score=78.08 Aligned_cols=50 Identities=28% Similarity=0.670 Sum_probs=44.6
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccce
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
.++.+|+||+..+.+++|.||+|. -|+.|..+-..+.+.|-.|+..+..+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence 346799999999999999999998 79999998888889999999988754
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=5.8e-05 Score=75.95 Aligned_cols=47 Identities=26% Similarity=0.448 Sum_probs=40.0
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhccC-Cccccccccccce
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKIKKV 434 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I~~v 434 (440)
..|.||+....-.+.++|+|. ||+.|........ +.|++||++|..-
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcc
Confidence 359999999988899999997 9999998766544 5699999999764
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.26 E-value=0.00027 Score=57.05 Aligned_cols=48 Identities=31% Similarity=0.388 Sum_probs=38.5
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
+...|+||.+-.++.+++||||. ++..|..++.+. ...||+|++++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35689999999999999999986 899999999887 7899999998865
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.22 E-value=0.00014 Score=72.96 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=42.6
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
....|.||.+..+-.+..+|||. ||.-|..........||+||.....
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 34689999999999999999997 9999999998888999999987543
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.21 E-value=0.00012 Score=74.86 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=43.0
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
-..|.||++-.+-.++.||||. ||.-|.....+....||.|+..++.
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 4579999999999999999997 8999999999988999999988764
No 36
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00012 Score=79.36 Aligned_cols=46 Identities=33% Similarity=0.574 Sum_probs=40.5
Q ss_pred CccccccccccCcc-----eEEecCCCccccHhhHHHHhccCCccccccccc
Q 043582 385 PRHLQVICCDAPRD-----CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKI 431 (440)
Q Consensus 385 ~~~~C~ICld~~rd-----~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I 431 (440)
....|.||.+.-.. ...+||||. +|..|...+.++...||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 34679999998777 689999997 89999999999889999999943
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00021 Score=72.14 Aligned_cols=45 Identities=27% Similarity=0.452 Sum_probs=36.8
Q ss_pred cccccccccCc---ceEEecCCCccccHhhHHHHhc-cCCcccccccccc
Q 043582 387 HLQVICCDAPR---DCFFLPCGHCAGCFTCGTRIAE-EGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~r---d~v~lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~ 432 (440)
-.|+||+++.. ..+++||.|. |-..|..+|.. -+.+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 56999997542 2688999998 78999988876 5679999999874
No 38
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.16 E-value=0.00029 Score=72.29 Aligned_cols=52 Identities=27% Similarity=0.599 Sum_probs=42.4
Q ss_pred CCCccccccccccCcceEEecCCCccccHhhHHHHhc--cCCcccccccccccee
Q 043582 383 SNPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE--EGGTCPICRKKIKKVR 435 (440)
Q Consensus 383 ~~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~--~~~~CPICR~~I~~vi 435 (440)
.+++..|.||-....-..++||+|. +|..|+.++.. ..+.||+||..-..++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 3455789999988888899999998 89999987754 4579999999766543
No 39
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.84 E-value=0.00043 Score=53.65 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=37.1
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
...|..|.......+++||||+ .|..|...-.- ..||+|.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rY--ngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERY--NGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhc--cCCCCCCCcccC
Confidence 3579999999888999999998 79999765432 589999998864
No 40
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0014 Score=68.99 Aligned_cols=49 Identities=27% Similarity=0.659 Sum_probs=43.0
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
..+..|.||+...-..+.+||||. +|..|..+.......||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 556789999999988899999997 8999988877778899999988765
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0022 Score=66.34 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=40.6
Q ss_pred CccccccccccCcceE-----E---ecCCCccccHhhHHHHhc--c-----CCccccccccccceeE
Q 043582 385 PRHLQVICCDAPRDCF-----F---LPCGHCAGCFTCGTRIAE--E-----GGTCPICRKKIKKVRK 436 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v-----~---lPCGH~~~C~~C~~~l~~--~-----~~~CPICR~~I~~vir 436 (440)
.+..|.||++..-+.. | .+|-|. +|..|+..+.. + .+.||+||.....+..
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 3568999998776655 4 679996 99999999873 3 4689999998877654
No 42
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.003 Score=67.47 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=38.2
Q ss_pred CCCcccccccccc-----------------CcceEEecCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 383 SNPRHLQVICCDA-----------------PRDCFFLPCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 383 ~~~~~~C~ICld~-----------------~rd~v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
......|+||+.. .++-++.||-|. +-..|..+++.+ +-.||+||+++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3455679999962 234467799997 789999999884 4499999998753
No 43
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.79 E-value=0.0065 Score=61.98 Aligned_cols=30 Identities=33% Similarity=0.842 Sum_probs=25.7
Q ss_pred cCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 403 PCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 403 PCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
+|||. +|..|...++.. ...||.|+..+..
T Consensus 25 ~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 89998 899999998754 4689999998865
No 44
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.70 E-value=0.005 Score=59.25 Aligned_cols=48 Identities=27% Similarity=0.497 Sum_probs=42.1
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccce
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
...|.||....+..++..|||. ||..|+.+-.+....|-+|.....+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccc
Confidence 4689999999999999999997 99999988777778999999876554
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0014 Score=67.41 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=38.0
Q ss_pred ccccccccccCcceEE-ecCCCccccHhhHHHHhc-cCCccccccccccce
Q 043582 386 RHLQVICCDAPRDCFF-LPCGHCAGCFTCGTRIAE-EGGTCPICRKKIKKV 434 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~-lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~~v 434 (440)
+..|.||++--+..+. .-|+|. ||+.|.....+ .+..||-||++...-
T Consensus 43 ~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3679999987666544 569998 89999877665 567999999987653
No 46
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0099 Score=60.86 Aligned_cols=60 Identities=20% Similarity=0.438 Sum_probs=43.7
Q ss_pred ccccCCCCccccccccccCcceEEecC-CCccccHhhHHHHhccCCcccccccc--ccceeEee
Q 043582 378 EGEINSNPRHLQVICCDAPRDCFFLPC-GHCAGCFTCGTRIAEEGGTCPICRKK--IKKVRKIF 438 (440)
Q Consensus 378 ~~E~~~~~~~~C~ICld~~rd~v~lPC-GH~~~C~~C~~~l~~~~~~CPICR~~--I~~virIf 438 (440)
+.|....+...|++|+....+..++-- |- ++|+.|+-.....-+.||+-..+ +...+|+|
T Consensus 292 e~e~l~~~~~~CpvClk~r~Nptvl~vSGy-VfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKRQNPTVLEVSGY-VFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccCCCccccChhHHhccCCCceEEecce-EEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 344455677789999988777655544 66 59999999988888999986554 44555555
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.34 E-value=0.007 Score=48.51 Aligned_cols=42 Identities=24% Similarity=0.516 Sum_probs=23.1
Q ss_pred cccccccccCcceE-EecCCCccccHhhHHHHhccCCccccccccc
Q 043582 387 HLQVICCDAPRDCF-FLPCGHCAGCFTCGTRIAEEGGTCPICRKKI 431 (440)
Q Consensus 387 ~~C~ICld~~rd~v-~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I 431 (440)
..|.+|.+-.+..+ +.-|.|. ||..|...-.. ..||+|+.+.
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS---B-TTTGGGGTT--TB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccH-HHHHHhHHhcC--CCCCCcCChH
Confidence 46999999998885 5899997 99999977543 5799999875
No 48
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.014 Score=58.47 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=37.2
Q ss_pred CccccccccccCcce-EEecCCCccccHhhHHHHhcc--CCccccccccccc
Q 043582 385 PRHLQVICCDAPRDC-FFLPCGHCAGCFTCGTRIAEE--GGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~-v~lPCGH~~~C~~C~~~l~~~--~~~CPICR~~I~~ 433 (440)
+..+|++|.+.|... +..||||. +|+.|+..-... .-+||.|...+..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcc
Confidence 345799999988876 55679997 899998765443 3589999988763
No 49
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.012 Score=59.43 Aligned_cols=51 Identities=20% Similarity=0.355 Sum_probs=43.8
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhccCCcccccccccccee
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVR 435 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vi 435 (440)
.-...|-||.....+.|+..|||. ||..|+..-.+....|++|.+.+.++.
T Consensus 239 ~~Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cCCccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 344569999999999999999997 899999887777789999999887653
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.70 E-value=0.016 Score=43.87 Aligned_cols=42 Identities=38% Similarity=0.705 Sum_probs=21.1
Q ss_pred cccccccC--cceEEe--cCCCccccHhhHHHHhc-cCCccccccccc
Q 043582 389 QVICCDAP--RDCFFL--PCGHCAGCFTCGTRIAE-EGGTCPICRKKI 431 (440)
Q Consensus 389 C~ICld~~--rd~v~l--PCGH~~~C~~C~~~l~~-~~~~CPICR~~I 431 (440)
|++|.+.. ++.-|. +||+. .|..|..++.. ..+.||-||++-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 56676543 344555 47887 79999999986 478999999864
No 51
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.60 E-value=0.029 Score=47.31 Aligned_cols=32 Identities=28% Similarity=0.633 Sum_probs=26.2
Q ss_pred EEecCCCccccHhhHHHHhcc---CCcccccccccc
Q 043582 400 FFLPCGHCAGCFTCGTRIAEE---GGTCPICRKKIK 432 (440)
Q Consensus 400 v~lPCGH~~~C~~C~~~l~~~---~~~CPICR~~I~ 432 (440)
++..|+|. |-..|..++.++ ++.||+||++.+
T Consensus 48 v~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 56689997 889999888774 479999999754
No 52
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.68 E-value=0.029 Score=62.79 Aligned_cols=45 Identities=36% Similarity=0.879 Sum_probs=38.1
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhcc--CCccccccccccc
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE--GGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~--~~~CPICR~~I~~ 433 (440)
..|.+|++ +..+++.+|||. +|..|....... ...||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 67999999 888899999997 899999887763 3479999987753
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.47 E-value=0.018 Score=64.53 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=40.7
Q ss_pred CccccccccccCcceEE---ecCCCccccHhhHHHHhccCCccccccccccceeE
Q 043582 385 PRHLQVICCDAPRDCFF---LPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRK 436 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~---lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vir 436 (440)
....|++|+..-.+-.. .+|+|. ||..|...|.+...+||+||..+.+++.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 34579999876655433 589996 9999999999888899999998877653
No 54
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=0.065 Score=53.29 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=39.7
Q ss_pred CccccccccccCcc----eEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAPRD----CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd----~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
....|++|.+.-.+ +++-||||+ +|.+|..++.+....||+|-.+.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 45689999875444 366699997 8999999999988999999998754
No 55
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.03 E-value=0.08 Score=52.53 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=37.5
Q ss_pred CCccccccccccC----cceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 384 NPRHLQVICCDAP----RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~----rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
.....|+|..... +-+.+.||||+ ++..+...+. ....||+|-.+...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCcccc
Confidence 4557899998644 34566799997 8999999995 34689999999764
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.67 E-value=0.051 Score=57.11 Aligned_cols=48 Identities=29% Similarity=0.598 Sum_probs=41.4
Q ss_pred ccccccccccCcceEE-ecCCCccccHhhHHHHhccCCccccccccccce
Q 043582 386 RHLQVICCDAPRDCFF-LPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~-lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
+..|.+|...-++.+- ..|||. +|..|..........||.|++.+...
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchh
Confidence 4679999999999888 599997 89999999888778999999887543
No 57
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.035 Score=56.68 Aligned_cols=47 Identities=26% Similarity=0.747 Sum_probs=34.9
Q ss_pred ccccccccccCcce--EEecCCCccccHhhHHHHhccCCccccccccccceeE
Q 043582 386 RHLQVICCDAPRDC--FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRK 436 (440)
Q Consensus 386 ~~~C~ICld~~rd~--v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vir 436 (440)
-..|.-| +.+..+ ..+||.|+ ||.+|+..-. .+.||.|-.+|.++.+
T Consensus 90 VHfCd~C-d~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 90 VHFCDRC-DFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQ 138 (389)
T ss_pred eEeeccc-CCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHH
Confidence 4677777 444433 56899997 9999998654 4789999988877543
No 58
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.86 E-value=0.066 Score=58.06 Aligned_cols=47 Identities=26% Similarity=0.479 Sum_probs=38.5
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhc-----cCCccccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE-----EGGTCPICRKKI 431 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~-----~~~~CPICR~~I 431 (440)
.....|.+|.+...+.+...|.|. ||.-|...... .+-+||.|....
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 344679999999999999999997 99999966554 346899998754
No 59
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.076 Score=56.02 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=33.1
Q ss_pred CCccccccccccCcc---eEEecCCCccccHhhHHHHhc--------cCCccccccc
Q 043582 384 NPRHLQVICCDAPRD---CFFLPCGHCAGCFTCGTRIAE--------EGGTCPICRK 429 (440)
Q Consensus 384 ~~~~~C~ICld~~rd---~v~lPCGH~~~C~~C~~~l~~--------~~~~CPICR~ 429 (440)
.....|.||++.... ..++||+|+ +|..|...... ..-+||-|.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 345679999987654 588999997 99999876553 1247887654
No 60
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.63 E-value=0.14 Score=38.51 Aligned_cols=40 Identities=33% Similarity=0.606 Sum_probs=30.8
Q ss_pred ccccccc--cCcceEEecCC-----CccccHhhHHHHhcc--CCcccccc
Q 043582 388 LQVICCD--APRDCFFLPCG-----HCAGCFTCGTRIAEE--GGTCPICR 428 (440)
Q Consensus 388 ~C~ICld--~~rd~v~lPCG-----H~~~C~~C~~~l~~~--~~~CPICR 428 (440)
.|.||++ .+.+..+.||. |. +=..|..++... +..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 3899996 56677889996 54 468999998854 45899995
No 61
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.96 E-value=0.12 Score=53.48 Aligned_cols=46 Identities=33% Similarity=0.719 Sum_probs=33.7
Q ss_pred cccccccccC--cceEE--ecCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 387 HLQVICCDAP--RDCFF--LPCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~--rd~v~--lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
..|+.|++.. .|--| .|||-. .|.-|...+.+. +++||-||+....
T Consensus 15 d~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 4599999643 22244 467776 799999998763 6899999997654
No 62
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.78 E-value=0.28 Score=45.90 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=17.1
Q ss_pred cccccccccCcceEEecCC
Q 043582 387 HLQVICCDAPRDCFFLPCG 405 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCG 405 (440)
-.|+|||+-|-++|+|-|-
T Consensus 3 ~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred ccCceeccCCCceEEEEec
Confidence 4699999999999999875
No 63
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.73 E-value=0.24 Score=50.55 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=36.4
Q ss_pred CCccccccccccCcceEEe-cCCCccccHhhHHHHhccCCccccccccccce
Q 043582 384 NPRHLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
.+-..|+||++...-.++- +=||+ .|..|..++. .+||.||.+|..+
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHl-aCssC~~~~~---~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHL-ACSSCRTKVS---NKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCcccceecCCCcE-ehhhhhhhhc---ccCCccccccccH
Confidence 3445799999877765552 34898 7999998775 5899999999754
No 64
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=90.68 E-value=0.25 Score=50.78 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=32.6
Q ss_pred CCCccccccccc-------------------cCcceEEecCCCccccHhhHHHHhcc----------CCccccccccccc
Q 043582 383 SNPRHLQVICCD-------------------APRDCFFLPCGHCAGCFTCGTRIAEE----------GGTCPICRKKIKK 433 (440)
Q Consensus 383 ~~~~~~C~ICld-------------------~~rd~v~lPCGH~~~C~~C~~~l~~~----------~~~CPICR~~I~~ 433 (440)
...+..|++|+. .+-+..|-||||+ |.+=..+.+.+ ...||.|-+.+..
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 344578999985 3344578899997 44444444432 2479999998754
No 65
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.57 E-value=0.17 Score=54.00 Aligned_cols=45 Identities=18% Similarity=0.442 Sum_probs=32.1
Q ss_pred CCccccccccccCcce----EEecCCCccccHhhHHHHhccCCccccccccc
Q 043582 384 NPRHLQVICCDAPRDC----FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKI 431 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~----v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I 431 (440)
...++|+||+++.-.- +-.+|.|-+. ..|..+++. ..||+||---
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh-~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFH-CSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccc-hHHHhhccc--CcChhhhhhc
Confidence 4457999999755332 4579999854 468777764 6899999643
No 66
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.06 E-value=0.075 Score=52.67 Aligned_cols=48 Identities=31% Similarity=0.581 Sum_probs=34.5
Q ss_pred CccccccccccC---cceEE--ec-CCCccccHhhHHHHhccC-Cccc--cccccccc
Q 043582 385 PRHLQVICCDAP---RDCFF--LP-CGHCAGCFTCGTRIAEEG-GTCP--ICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~---rd~v~--lP-CGH~~~C~~C~~~l~~~~-~~CP--ICR~~I~~ 433 (440)
.+..|++|.... .++.+ -| |-|. +|..|..++...+ ..|| -|.+..++
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 345799997532 23333 36 9998 8999999999864 5899 88765543
No 67
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.96 E-value=0.3 Score=37.16 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=27.8
Q ss_pred ccccccccCcceEEecCCCccccHhhHHHHhccCCcccccccccccee
Q 043582 388 LQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVR 435 (440)
Q Consensus 388 ~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vi 435 (440)
.|.-|.-+.+..+ .|.-...|..|...|...+..||||..++...+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 4888987777644 587446999999999998899999999876543
No 68
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=88.37 E-value=0.11 Score=53.43 Aligned_cols=52 Identities=27% Similarity=0.475 Sum_probs=42.8
Q ss_pred CccccccccccCcce-EEecCCCccccHhhHHHHhccCCccccccccccceeEe
Q 043582 385 PRHLQVICCDAPRDC-FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 385 ~~~~C~ICld~~rd~-v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virI 437 (440)
....|.+|-.-..|+ .+.-|-|- ||..|..+.......||.|...|.+..+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTHPL 66 (331)
T ss_pred cceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcccc
Confidence 345799998877777 44579997 99999998888888999999999876543
No 69
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=0.23 Score=50.04 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=35.6
Q ss_pred CCccccccccccCc----------ceEEecCCCccccHhhHHHHhc--cCCccccccccccc
Q 043582 384 NPRHLQVICCDAPR----------DCFFLPCGHCAGCFTCGTRIAE--EGGTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~r----------d~v~lPCGH~~~C~~C~~~l~~--~~~~CPICR~~I~~ 433 (440)
.++..|.||-..-- +.--+.|+|. +-..|.+-+.- .+++||.|+.+|+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 34568999964322 2234799997 78999988764 45699999998864
No 70
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.60 E-value=0.71 Score=48.33 Aligned_cols=45 Identities=27% Similarity=0.667 Sum_probs=30.6
Q ss_pred cccccccccCcceEEe-----------------cCCCccc----cHhhHHHHhc-------------cCCccccccccc
Q 043582 387 HLQVICCDAPRDCFFL-----------------PCGHCAG----CFTCGTRIAE-------------EGGTCPICRKKI 431 (440)
Q Consensus 387 ~~C~ICld~~rd~v~l-----------------PCGH~~~----C~~C~~~l~~-------------~~~~CPICR~~I 431 (440)
..|.-|+.++.++.+. +|....+ |.+|..++.. .+..||.||++.
T Consensus 272 e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 272 EPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred CCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3588888877777554 3443221 8889877764 246899999975
No 71
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.25 E-value=0.39 Score=43.82 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=38.7
Q ss_pred ccccccccCcceEEec----CCCccccHhhHHHHhcc---CCcccccccccccee
Q 043582 388 LQVICCDAPRDCFFLP----CGHCAGCFTCGTRIAEE---GGTCPICRKKIKKVR 435 (440)
Q Consensus 388 ~C~ICld~~rd~v~lP----CGH~~~C~~C~~~l~~~---~~~CPICR~~I~~vi 435 (440)
+|-||.+.-.+--|+. ||-. .|..|...+|+. -+.||+|+...++.-
T Consensus 82 eCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 5999999888887763 8864 899999999984 479999999887653
No 72
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=86.20 E-value=0.22 Score=52.44 Aligned_cols=52 Identities=19% Similarity=0.503 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cCcceEEecCCCccccHhhHHHHhc-----c----CCccccccccccc---e
Q 043582 386 RHLQVICCD-------------------APRDCFFLPCGHCAGCFTCGTRIAE-----E----GGTCPICRKKIKK---V 434 (440)
Q Consensus 386 ~~~C~ICld-------------------~~rd~v~lPCGH~~~C~~C~~~l~~-----~----~~~CPICR~~I~~---v 434 (440)
...|++|.. .+-+.+|-||||+| -...+.-|.+ . ...||.|-.++.. .
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 678999984 34456889999983 2334333332 1 2589999999875 4
Q ss_pred eEee
Q 043582 435 RKIF 438 (440)
Q Consensus 435 irIf 438 (440)
+|++
T Consensus 407 vrLi 410 (416)
T PF04710_consen 407 VRLI 410 (416)
T ss_dssp ----
T ss_pred eEEE
Confidence 5543
No 73
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=84.73 E-value=0.52 Score=56.53 Aligned_cols=49 Identities=29% Similarity=0.613 Sum_probs=36.1
Q ss_pred CCccccccccccCc---ceEEecCCCccccHhhHHHHhcc----------CCccccccccccc
Q 043582 384 NPRHLQVICCDAPR---DCFFLPCGHCAGCFTCGTRIAEE----------GGTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~r---d~v~lPCGH~~~C~~C~~~l~~~----------~~~CPICR~~I~~ 433 (440)
+.+..|.||+.+.- -++-+.|+|. |-..|..++..+ ...||+|.++|..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34568999997653 3477899998 667777776652 2379999999864
No 74
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.08 E-value=0.48 Score=54.72 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=32.0
Q ss_pred ccccccccC-------cceEEecCCCccccHhhHHHHhcc--CCccccccccccc
Q 043582 388 LQVICCDAP-------RDCFFLPCGHCAGCFTCGTRIAEE--GGTCPICRKKIKK 433 (440)
Q Consensus 388 ~C~ICld~~-------rd~v~lPCGH~~~C~~C~~~l~~~--~~~CPICR~~I~~ 433 (440)
+|+||+.-- ..-..--|.|. |-..|.-+|.+. +.+||.||..|+-
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 499998511 11233458887 778999888874 4699999988753
No 75
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=82.93 E-value=1 Score=46.41 Aligned_cols=51 Identities=6% Similarity=-0.089 Sum_probs=43.3
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEe
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virI 437 (440)
....|..|-.+-...++.||||..+|..|+.. .....||+|...+...++|
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence 45789999999999999999999999999983 3447999999887777665
No 76
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=82.78 E-value=1.1 Score=37.61 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=32.3
Q ss_pred ccccccc---cCcc--eEEecCCCccccHhhHHHHhccCCccccccccc
Q 043582 388 LQVICCD---APRD--CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKI 431 (440)
Q Consensus 388 ~C~ICld---~~rd--~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I 431 (440)
.|+-|.. ...+ ++.--|.|. |-.-|..++..+++.||+||++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchH-HHHHHHHHHHhhCCCCCCCCcee
Confidence 4666654 2222 255689997 78999999999999999999975
No 77
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=82.45 E-value=1.3 Score=34.41 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=27.8
Q ss_pred ccccccccccCcceEE-ecCCCccccHhhHHHHhc--cCCcccc
Q 043582 386 RHLQVICCDAPRDCFF-LPCGHCAGCFTCGTRIAE--EGGTCPI 426 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~-lPCGH~~~C~~C~~~l~~--~~~~CPI 426 (440)
...|+|.+...++.+. ..|||. |.......+.+ ...+||+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 4579999999999877 499996 89999999884 3458998
No 78
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=78.58 E-value=12 Score=30.26 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=45.2
Q ss_pred eecCCeeEEEEEEecCCCCCeEEEEEecccccc-ccccCCCCCCcceeeeEeeC-CceEEEEE----eccCceEEEEeec
Q 043582 146 LNKGSKLEISYNVKSPSSAPLSLVIARGGESLE-DWIDHPSCPKTTLSWNILYG-SGKIQQKI----SKSSDYYIAVGNL 219 (440)
Q Consensus 146 LNkGS~i~isy~v~~~~~~~l~lvi~~G~~~~~-~w~~~p~~p~~tlsw~~i~g-~g~~~~~i----~~~~~Yyiav~Nl 219 (440)
+..|+.+.|+|.........+.|.+.+|..... .+ .++ -.-+.+ .|...+++ ..++.|||.+.|.
T Consensus 9 ~~~g~~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~--------~~i-a~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~~ 79 (93)
T PF10342_consen 9 WTAGQPITITWTSDGTDPGNVTIYLCNGNNTNLNFV--------QTI-ASNVSNSDGSYTWTIPSDLPSGGDYFIQIVNS 79 (93)
T ss_pred EECCCcEEEEEeCCCCCCcEEEEEEEcCCCCCccee--------EEE-EecccCCCCEEEEEcCCCCCCCCcEEEEEEEC
Confidence 456999999999987667889999999988322 11 111 111222 26666665 3468899999976
Q ss_pred Ccc
Q 043582 220 NSQ 222 (440)
Q Consensus 220 n~~ 222 (440)
...
T Consensus 80 ~~~ 82 (93)
T PF10342_consen 80 SNN 82 (93)
T ss_pred CCC
Confidence 654
No 79
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=77.19 E-value=0.73 Score=47.44 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=41.8
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHH-hccCCccccccccccceeEe
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRI-AEEGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l-~~~~~~CPICR~~I~~virI 437 (440)
...|++|+.+..-....||||-+||..|+... .+....||||...+.+...|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 45699999999888999999999999998877 33445699998877655444
No 80
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=75.73 E-value=0.97 Score=36.40 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=20.2
Q ss_pred cccccccccCc-c-----eEEe--cCCCccccHhhHHHHhcc-----------CCcccccccccc
Q 043582 387 HLQVICCDAPR-D-----CFFL--PCGHCAGCFTCGTRIAEE-----------GGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~r-d-----~v~l--PCGH~~~C~~C~~~l~~~-----------~~~CPICR~~I~ 432 (440)
..|.||+...- + .+.- .|++. +-..|...+... .++||.|+++|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 35999997533 1 1221 57765 557887777541 247999999885
No 81
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=72.73 E-value=1.2 Score=39.96 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEEecCCCcceeEEEeecCCeeEEEEEEecCC-CCCeEEEEEeccccccccccCCCC--CCcceeeeEeeCCceEEEEEe
Q 043582 131 IAVVPDDGHKEWLYFLNKGSKLEISYNVKSPS-SAPLSLVIARGGESLEDWIDHPSC--PKTTLSWNILYGSGKIQQKIS 207 (440)
Q Consensus 131 ~~~v~~~s~k~w~y~LNkGS~i~isy~v~~~~-~~~l~lvi~~G~~~~~~w~~~p~~--p~~tlsw~~i~g~g~~~~~i~ 207 (440)
.+.|+++..+=+...+.+|..|.++|.|.+.. ...+.+.|. ||+. ..-...|... ..|...++..
T Consensus 3 ~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~-----------~~~~~~~~i~~~~~~~-~~~~f~f~~~ 70 (183)
T PF01105_consen 3 TFELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIR-----------DPDPNGEVIYSKSDKE-SEGSFSFTAK 70 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEE-----------ecccCCceeeeecccc-cCCcEEEEec
Confidence 35678888888899999999999999999874 355555544 3321 1111222222 2378899999
Q ss_pred ccCceEEEEeecCccc---eeEEEEEEEeE
Q 043582 208 KSSDYYIAVGNLNSQQ---VEMQLNFTMNV 234 (440)
Q Consensus 208 ~~~~Yyiav~Nln~~~---v~v~l~~~i~~ 234 (440)
+.-.|.|-+.|..+.. ..|.+++.+..
T Consensus 71 ~~G~y~iCf~n~~~~~~~~~~v~~~~~~~~ 100 (183)
T PF01105_consen 71 ESGEYQICFDNSSSSFSPSKRVSFDIDVGN 100 (183)
T ss_dssp ------------------------------
T ss_pred cCCCEEEEEEcCCCCccccEEEEEEEEEee
Confidence 9999999999998864 66666666643
No 82
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=71.77 E-value=1.9 Score=35.94 Aligned_cols=28 Identities=21% Similarity=0.580 Sum_probs=20.8
Q ss_pred cccccccccCcc--eEEecCCCccccHhhHH
Q 043582 387 HLQVICCDAPRD--CFFLPCGHCAGCFTCGT 415 (440)
Q Consensus 387 ~~C~ICld~~rd--~v~lPCGH~~~C~~C~~ 415 (440)
..|.+|...-.+ .++.||||. +...|..
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 469999865543 466899997 6788864
No 83
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=68.66 E-value=1.8 Score=44.42 Aligned_cols=45 Identities=31% Similarity=0.581 Sum_probs=28.1
Q ss_pred cccccccccC---cceEEecCCCccccHhhHHHHhc-----------------------cCCcccccccccc
Q 043582 387 HLQVICCDAP---RDCFFLPCGHCAGCFTCGTRIAE-----------------------EGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~---rd~v~lPCGH~~~C~~C~~~l~~-----------------------~~~~CPICR~~I~ 432 (440)
..|+||+=.. -..+..+|-|. +-+.|..+... ....|||||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4588887432 22467899997 44556433221 0246999999885
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.70 E-value=3.3 Score=41.26 Aligned_cols=31 Identities=32% Similarity=0.842 Sum_probs=24.9
Q ss_pred EEecCCCccccHhhHHHHhccC-Cccccccccc
Q 043582 400 FFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKI 431 (440)
Q Consensus 400 v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I 431 (440)
..+-|||. +|..|+.++.... ..||.||...
T Consensus 23 ~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 23 RVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 34449997 8999999988754 5799999984
No 85
>PHA03096 p28-like protein; Provisional
Probab=66.46 E-value=3.2 Score=42.26 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=29.1
Q ss_pred cccccccccC--------cceEEecCCCccccHhhHHHHhcc---CCccccccc
Q 043582 387 HLQVICCDAP--------RDCFFLPCGHCAGCFTCGTRIAEE---GGTCPICRK 429 (440)
Q Consensus 387 ~~C~ICld~~--------rd~v~lPCGH~~~C~~C~~~l~~~---~~~CPICR~ 429 (440)
..|-||+++. +..++-.|-|. +|..|...+... +..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 5799999743 33466689997 999999877652 234555554
No 86
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=65.61 E-value=5.8 Score=37.30 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=33.0
Q ss_pred CccccccccccCcceEEecCCCcc----ccHhhHHHHhcc--CCcccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCA----GCFTCGTRIAEE--GGTCPICRKKIK 432 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~----~C~~C~~~l~~~--~~~CPICR~~I~ 432 (440)
.++.|-||++...+ ..-||.-.. .-..|..++... ...|++|+++..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34579999988754 446776431 236798888764 468999999763
No 87
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=65.20 E-value=3.3 Score=37.82 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=25.8
Q ss_pred cccccccccCcc---eEEecCCCc-----cccHhhHHHHhcc
Q 043582 387 HLQVICCDAPRD---CFFLPCGHC-----AGCFTCGTRIAEE 420 (440)
Q Consensus 387 ~~C~ICld~~rd---~v~lPCGH~-----~~C~~C~~~l~~~ 420 (440)
.+|.||+++--+ ++.++||-. .+|..|..++.+.
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 359999986544 677899933 2899999999543
No 88
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=65.15 E-value=4.7 Score=35.84 Aligned_cols=18 Identities=28% Similarity=0.739 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 043582 290 RWITYFAGLGAMTILMFL 307 (440)
Q Consensus 290 r~lt~I~Gl~~l~vL~~~ 307 (440)
||+.+++.++++++++++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 455444444444433333
No 89
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=64.67 E-value=3.8 Score=36.03 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=26.2
Q ss_pred EEecCCCccccHhhHHHHhccCCcccccccc
Q 043582 400 FFLPCGHCAGCFTCGTRIAEEGGTCPICRKK 430 (440)
Q Consensus 400 v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~ 430 (440)
+-.-|.|. |-+-|..++.+++..||.|.++
T Consensus 77 aWG~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 77 AWGVCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred EeeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 44689996 7899999999999999999875
No 90
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.34 E-value=2.7 Score=47.04 Aligned_cols=39 Identities=28% Similarity=0.590 Sum_probs=30.4
Q ss_pred cccccccc----cCcceEEecCCCccccHhhHHHHhccCCccccccc
Q 043582 387 HLQVICCD----APRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRK 429 (440)
Q Consensus 387 ~~C~ICld----~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~ 429 (440)
..|.||+. .....+++-|||. .|..|++.+-+ ..|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn--~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYN--ASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhh--ccCC-CCc
Confidence 46999964 4566688999997 89999999876 5788 544
No 91
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=62.94 E-value=2.3 Score=43.10 Aligned_cols=45 Identities=36% Similarity=0.565 Sum_probs=35.0
Q ss_pred cccccccc----cCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 387 HLQVICCD----APRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld----~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
..|+||.+ -..++..++|||.-. ..|...+....-.||+|.. +..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHH
Confidence 34999975 445568899999854 8999888876689999998 543
No 92
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=62.34 E-value=3.3 Score=41.59 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=26.3
Q ss_pred CccccccccccCcceEEecC---C--CccccHhhHHHHhccCCccccccccccceeEe
Q 043582 385 PRHLQVICCDAPRDCFFLPC---G--HCAGCFTCGTRIAEEGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPC---G--H~~~C~~C~~~l~~~~~~CPICR~~I~~virI 437 (440)
....|+||-..+.-.++..= | |+ +|.-|...+.-....||.|-..-......
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~ 227 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEY 227 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE-
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceee
Confidence 45789999999888777654 3 43 79999999877778999998875554443
No 93
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.63 E-value=3.9 Score=42.11 Aligned_cols=43 Identities=28% Similarity=0.519 Sum_probs=33.0
Q ss_pred cccccccccCcceEEec-CCCccccHhhHHHH-hccCCcccccccc
Q 043582 387 HLQVICCDAPRDCFFLP-CGHCAGCFTCGTRI-AEEGGTCPICRKK 430 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lP-CGH~~~C~~C~~~l-~~~~~~CPICR~~ 430 (440)
..|+.|..-.++.+-.| |||. ||.+|.... ......||.|.++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCcccc
Confidence 68999987777766664 7886 999998754 3455799999873
No 94
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=61.01 E-value=1.9 Score=45.67 Aligned_cols=48 Identities=27% Similarity=0.490 Sum_probs=36.1
Q ss_pred CCccccccccc----cCcceEEecCCCccccHhhHHHHhcc--CCcccccccccc
Q 043582 384 NPRHLQVICCD----APRDCFFLPCGHCAGCFTCGTRIAEE--GGTCPICRKKIK 432 (440)
Q Consensus 384 ~~~~~C~ICld----~~rd~v~lPCGH~~~C~~C~~~l~~~--~~~CPICR~~I~ 432 (440)
+.+..|-.|-+ ++...-.+||.|. |-..|...+..+ ...||-||+-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 34567999975 4555677999997 789999877653 368999996544
No 95
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.94 E-value=4.8 Score=41.17 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=27.8
Q ss_pred ccccccccccCcceEEecCC----CccccHhhHHHHhc
Q 043582 386 RHLQVICCDAPRDCFFLPCG----HCAGCFTCGTRIAE 419 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCG----H~~~C~~C~~~l~~ 419 (440)
...|.+|.++-.|.-|+-|- |. ||+.|...-.+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK 304 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 304 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccc-eecccCHHHHH
Confidence 36799999999999999884 75 99999877655
No 96
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=1.9 Score=35.96 Aligned_cols=42 Identities=26% Similarity=0.490 Sum_probs=27.1
Q ss_pred cccccccCcce--EEecCCCccccHhhHHHHhc---cCCccccccccc
Q 043582 389 QVICCDAPRDC--FFLPCGHCAGCFTCGTRIAE---EGGTCPICRKKI 431 (440)
Q Consensus 389 C~ICld~~rd~--v~lPCGH~~~C~~C~~~l~~---~~~~CPICR~~I 431 (440)
|+-|.-..-++ ++--|.|. |=.-|..++.. ....||+|||..
T Consensus 34 Cp~Ck~PgDdCPLv~G~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 34 CPDCKLPGDDCPLVWGYCLHA-FHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCCcCCCCCCccHHHHHHHH-HHHHHHHHHhcCccccccCCcchhee
Confidence 44444333333 33468886 66889887765 246899999964
No 97
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.44 E-value=8.4 Score=40.88 Aligned_cols=51 Identities=18% Similarity=0.462 Sum_probs=35.3
Q ss_pred cccccccccCc---ceEEecCCCccccHhhHHHHhccCC---ccccccccc--cceeEee
Q 043582 387 HLQVICCDAPR---DCFFLPCGHCAGCFTCGTRIAEEGG---TCPICRKKI--KKVRKIF 438 (440)
Q Consensus 387 ~~C~ICld~~r---d~v~lPCGH~~~C~~C~~~l~~~~~---~CPICR~~I--~~virIf 438 (440)
..|+|=.+.-. -.+-+.|||+ .|.+=..++.+... +||.|-... ...++||
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~ 393 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLY 393 (394)
T ss_pred eecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccCHHhccccc
Confidence 56777543222 2477899997 79999999887643 899997654 3455555
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=54.18 E-value=3.5 Score=49.33 Aligned_cols=47 Identities=28% Similarity=0.532 Sum_probs=38.4
Q ss_pred CccccccccccCc-ceEEecCCCccccHhhHHHHhccCCcccccccccc
Q 043582 385 PRHLQVICCDAPR-DCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 385 ~~~~C~ICld~~r-d~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
....|.||.+--+ -..+.-|||. .|..|...+......||+|.....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhh
Confidence 3458999999877 5577789996 899999999888889999986543
No 99
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=54.12 E-value=29 Score=32.77 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=18.4
Q ss_pred eccchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 285 LSYGPRWITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 285 lSy~~r~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
....-|.+.+++|+.++++ +|+++|.+|-++
T Consensus 91 ~~~l~R~~~Vl~g~s~l~i-~yfvir~~R~r~ 121 (163)
T PF06679_consen 91 SPMLKRALYVLVGLSALAI-LYFVIRTFRLRR 121 (163)
T ss_pred ccchhhhHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 3445567766666655555 455566776655
No 100
>PLN02189 cellulose synthase
Probab=53.72 E-value=9.4 Score=45.08 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=33.0
Q ss_pred ccccccccccC----cceEEecCCCc--cccHhhHHHHhc-cCCccccccccccc
Q 043582 386 RHLQVICCDAP----RDCFFLPCGHC--AGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~----rd~v~lPCGH~--~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
.+.|.||-|+. ..-.|..|.-+ ..|..|..--.+ .++.||-|++..++
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 45799999863 22266666532 279999965544 35789999998764
No 101
>PLN02436 cellulose synthase A
Probab=52.34 E-value=10 Score=45.03 Aligned_cols=48 Identities=27% Similarity=0.622 Sum_probs=33.2
Q ss_pred ccccccccccCc---ce-EEecCCCc--cccHhhHHHHhc-cCCccccccccccc
Q 043582 386 RHLQVICCDAPR---DC-FFLPCGHC--AGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~r---d~-v~lPCGH~--~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
.+.|.||-|+.- +. .|..|..+ ..|..|..--.+ .++.||-|+++.++
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 458999998642 22 66666543 269999965444 35789999998764
No 102
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.35 E-value=9.8 Score=39.52 Aligned_cols=46 Identities=35% Similarity=0.761 Sum_probs=35.8
Q ss_pred cccccccccC--cceEE--ecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 387 HLQVICCDAP--RDCFF--LPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~--rd~v~--lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
..|+||.+.. .+..+ .||||. .|..|...+......||+||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCcccc
Confidence 5799998733 33344 468998 8999999998888999999977644
No 103
>PHA02862 5L protein; Provisional
Probab=50.97 E-value=11 Score=35.00 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=31.8
Q ss_pred cccccccccCcceEEecCCCcc----ccHhhHHHHhcc--CCcccccccccc
Q 043582 387 HLQVICCDAPRDCFFLPCGHCA----GCFTCGTRIAEE--GGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~----~C~~C~~~l~~~--~~~CPICR~~I~ 432 (440)
+.|-||++...+. .-||+-.. .-..|..++.+. +..||+|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4699999876554 57877421 246898887763 468999998753
No 104
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=50.68 E-value=12 Score=31.27 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=18.3
Q ss_pred ccccccccccCcce----EEec---CCCccccHhhHHHHhc-cCCccccccccccc
Q 043582 386 RHLQVICCDAPRDC----FFLP---CGHCAGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~----v~lP---CGH~~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
.+.|.||-+..-.. +|.- |+-- .|+.|..-=.+ ..+.||-|+.+.++
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fP-vCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFP-VCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCc-cchhHHHHHhhcCcccccccCCCccc
Confidence 46799998744221 5544 4443 59999865444 45789999987654
No 105
>PF12669 P12: Virus attachment protein p12 family
Probab=50.54 E-value=11 Score=29.64 Aligned_cols=23 Identities=4% Similarity=0.213 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHhcCc
Q 043582 294 YFAGLGAMTILMFL-AFRYCNMCR 316 (440)
Q Consensus 294 ~I~Gl~~l~vL~~~-l~R~~~k~r 316 (440)
+|++++++++++|+ +++++++++
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~K 25 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDKK 25 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555 488887765
No 106
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=49.92 E-value=13 Score=27.65 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 289 PRWITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 289 ~r~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
..+.-.++|+++++++...++|-|..+|
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567888899998888888887765
No 107
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=49.69 E-value=80 Score=37.79 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=26.0
Q ss_pred CCeeEEEEEEecCCCCCeEEEEEeccccccccccCCCCC
Q 043582 149 GSKLEISYNVKSPSSAPLSLVIARGGESLEDWIDHPSCP 187 (440)
Q Consensus 149 GS~i~isy~v~~~~~~~l~lvi~~G~~~~~~w~~~p~~p 187 (440)
+.-++|++.+..-......++.+++.--....++|....
T Consensus 895 ~~C~~i~C~i~~~~~~~~~~v~v~~~lw~~tf~~~~~~~ 933 (1030)
T KOG3637|consen 895 ARCVTIRCDIGDLDAGEEASVTVKGRLWNSTFIEDKSDV 933 (1030)
T ss_pred CceEEEEEeccccCCCceEEEEeeehhchhhhhhhhccc
Confidence 334667777777666677788778776666666555444
No 108
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.44 E-value=12 Score=39.82 Aligned_cols=31 Identities=39% Similarity=0.679 Sum_probs=23.9
Q ss_pred EecCCCccccHhhHHHHhcc---CCcccccccccc
Q 043582 401 FLPCGHCAGCFTCGTRIAEE---GGTCPICRKKIK 432 (440)
Q Consensus 401 ~lPCGH~~~C~~C~~~l~~~---~~~CPICR~~I~ 432 (440)
+--|||. |-..|..+|... ...|||||-++.
T Consensus 23 i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 23 IGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ccchhhH-HHHHHHHHHHccCCccCCCCceeeccc
Confidence 3459997 789999999874 258999995443
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.59 E-value=11 Score=38.78 Aligned_cols=22 Identities=36% Similarity=0.875 Sum_probs=16.9
Q ss_pred cHhhHHHHhc-------------cCCccccccccc
Q 043582 410 CFTCGTRIAE-------------EGGTCPICRKKI 431 (440)
Q Consensus 410 C~~C~~~l~~-------------~~~~CPICR~~I 431 (440)
|.+|..++.- ++.+||.||++.
T Consensus 330 c~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 330 CRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred HHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 7888777653 357899999975
No 110
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.51 E-value=11 Score=37.41 Aligned_cols=26 Identities=27% Similarity=0.797 Sum_probs=22.6
Q ss_pred ccccHhhHHHHhccCCcccccccccc
Q 043582 407 CAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 407 ~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
+-.|..|...+-++...||+|+.+=+
T Consensus 194 MK~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 194 MKTCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred cchhHhHHHHHhcCCCCCcccccccc
Confidence 45799999999999999999998644
No 111
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=46.89 E-value=5.2 Score=45.20 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=37.6
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhcc---CCccccccccccc
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE---GGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~---~~~CPICR~~I~~ 433 (440)
.+|.||+....+.+.+.|-|. +|..|....... ...||+|+..+.+
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 359999998888889999997 899998776653 3589999976654
No 112
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.87 E-value=11 Score=38.98 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=33.5
Q ss_pred CccccccccccCcceEEec---CCCc-cccHhhHHHHhccCCcccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLP---CGHC-AGCFTCGTRIAEEGGTCPICRKK 430 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lP---CGH~-~~C~~C~~~l~~~~~~CPICR~~ 430 (440)
....|++|-..|.-.++.. =|+. ..|.-|...+.-...+||.|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 4678999999887654422 2322 36999998887777899999873
No 113
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=46.39 E-value=3.2 Score=34.01 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=22.8
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhccCCcccccccccccee
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVR 435 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vi 435 (440)
..|+.|....... . || ..|..|....... ..||-|.++++.+.
T Consensus 2 ~~CP~C~~~L~~~---~-~~-~~C~~C~~~~~~~-a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQ---G-GH-YHCEACQKDYKKE-AFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEE---T-TE-EEETTT--EEEEE-EE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEe---C-CE-EECccccccceec-ccCCCcccHHHHHH
Confidence 4699997652221 1 56 4899998876543 68999999887643
No 114
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.18 E-value=1.3e+02 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 291 WITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 291 ~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
-+++.+|++.+++++.+++.++++++
T Consensus 233 slAiALG~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 233 SLAIALGTVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667777777777777776666654
No 115
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=45.43 E-value=15 Score=43.69 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=31.9
Q ss_pred ccccccccccCcce----EEecCCCc--cccHhhHHHHhc-cCCccccccccccc
Q 043582 386 RHLQVICCDAPRDC----FFLPCGHC--AGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~----v~lPCGH~--~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
.+.|.||-|..--. .|.-|..+ ..|+.|..-=.+ .++.||-|++..++
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45899998863221 55555543 269999854333 35789999998764
No 116
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=42.99 E-value=10 Score=29.83 Aligned_cols=21 Identities=38% Similarity=0.953 Sum_probs=15.5
Q ss_pred CCCcceeEE----------EeecCCeeEEEEEE
Q 043582 136 DDGHKEWLY----------FLNKGSKLEISYNV 158 (440)
Q Consensus 136 ~~s~k~w~y----------~LNkGS~i~isy~v 158 (440)
++|+|.|+| ||.+|.+ |-|.-
T Consensus 12 agsy~dwsysgqrtelgveflkrgdk--ivyht 42 (66)
T PF12124_consen 12 AGSYRDWSYSGQRTELGVEFLKRGDK--IVYHT 42 (66)
T ss_dssp HTEETTEE----EETTEEEEEEETTE--EEEE-
T ss_pred cccccccccccceehhhhHHHhcCCE--EEEEe
Confidence 578999998 8999999 55653
No 117
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=42.88 E-value=8 Score=39.79 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=33.4
Q ss_pred CccccccccccCcceEEec----CCCc-cccHhhHHHHhccCCcccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLP----CGHC-AGCFTCGTRIAEEGGTCPICRKK 430 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lP----CGH~-~~C~~C~~~l~~~~~~CPICR~~ 430 (440)
....|++|-..+.-.++.. =|+. ..|.-|...|.-...+||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 4568999999886554433 2322 37999998887777899999875
No 118
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=42.01 E-value=19 Score=41.60 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=35.3
Q ss_pred Cccccccccc--cCcceEEecCCCcc----ccHhhHHHHhc--cCCcccccccccc
Q 043582 385 PRHLQVICCD--APRDCFFLPCGHCA----GCFTCGTRIAE--EGGTCPICRKKIK 432 (440)
Q Consensus 385 ~~~~C~ICld--~~rd~v~lPCGH~~----~C~~C~~~l~~--~~~~CPICR~~I~ 432 (440)
++..|.||.. .+-+..|.||.... .-.+|...|.. .+.+|-+|..+++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4468999974 45667899998542 35789888776 3468999998874
No 119
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.54 E-value=17 Score=36.79 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=33.5
Q ss_pred CCccccccccccCcce----EEecCCCcc----ccHhhHHHHhccC--------Cccccccccccce
Q 043582 384 NPRHLQVICCDAPRDC----FFLPCGHCA----GCFTCGTRIAEEG--------GTCPICRKKIKKV 434 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~----v~lPCGH~~----~C~~C~~~l~~~~--------~~CPICR~~I~~v 434 (440)
+.++.|-||+....|- .+-||.... .-..|..++...+ -.||.|+..-..+
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 4557899999655553 566887332 2467877776532 3699999875443
No 120
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=41.21 E-value=16 Score=38.51 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=15.1
Q ss_pred cccccccccCcceEEecCCCccccHhhH
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCG 414 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~ 414 (440)
.+|++|-|+...--. |-+ .|..|.
T Consensus 16 ElCPVCGDkVSGYHY---GLL-TCESCK 39 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHY---GLL-TCESCK 39 (475)
T ss_pred cccccccCcccccee---eee-ehhhhh
Confidence 379999988765322 332 566664
No 121
>PLN02400 cellulose synthase
Probab=40.54 E-value=16 Score=43.35 Aligned_cols=48 Identities=23% Similarity=0.613 Sum_probs=31.4
Q ss_pred ccccccccccCcce----EEecCCCc--cccHhhHHHHhc-cCCccccccccccc
Q 043582 386 RHLQVICCDAPRDC----FFLPCGHC--AGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~----v~lPCGH~--~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
.+.|.||-|..--. .|.-|..+ ..|+.|..-=.+ .++.||-|++.-++
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 45899998863221 45555442 269999854333 35789999998764
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=39.25 E-value=19 Score=27.21 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=18.3
Q ss_pred ccccccccCcce-EEecCCCccccHhhHHHHhc----cCCcccccccc
Q 043582 388 LQVICCDAPRDC-FFLPCGHCAGCFTCGTRIAE----EGGTCPICRKK 430 (440)
Q Consensus 388 ~C~ICld~~rd~-v~lPCGH~~~C~~C~~~l~~----~~~~CPICR~~ 430 (440)
.|+|.....+.. .-..|.|. -|++=..-+.. ..-.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 588888766655 34579998 56654333322 22479999874
No 123
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.86 E-value=2.3e+02 Score=27.70 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=64.8
Q ss_pred eeEEEecCCCcceeEEEeecCCeeEEEEEEecCCCCCeEEEEEeccccccccccCCCCCCcceeeeEeeCCceEEEEEec
Q 043582 129 THIAVVPDDGHKEWLYFLNKGSKLEISYNVKSPSSAPLSLVIARGGESLEDWIDHPSCPKTTLSWNILYGSGKIQQKISK 208 (440)
Q Consensus 129 ~~~~~v~~~s~k~w~y~LNkGS~i~isy~v~~~~~~~l~lvi~~G~~~~~~w~~~p~~p~~tlsw~~i~g~g~~~~~i~~ 208 (440)
.+.+++.++..+=+.-.|++|.++-++|.|... +-...=+++-|-++=.=...+ + +-+|+.+|...+
T Consensus 20 ~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~g-g~~~vd~~I~gP~~~~i~~~~---~---------~ssgk~tF~a~~ 86 (201)
T KOG1692|consen 20 GYGISLDAHEEECFFENLEEGDKLSVSFEVIDG-GFLGVDVEITGPDGKIIHKGK---R---------ESSGKYTFTAPK 86 (201)
T ss_pred heeEEEccchhhhHhhhhccCCEEEEEEEEecC-CccceeEEEECCCCchhhhcc---c---------ccCceEEEEecC
Confidence 466778887777677789999999999999884 555454555554432111100 0 126999999999
Q ss_pred cCceEEEEeecCc--cceeEEEEEEEe
Q 043582 209 SSDYYIAVGNLNS--QQVEMQLNFTMN 233 (440)
Q Consensus 209 ~~~Yyiav~Nln~--~~v~v~l~~~i~ 233 (440)
+-.|-.-+.|-.+ ..=+|.++|.+-
T Consensus 87 ~G~Y~fCF~N~~s~mtpk~V~F~ihvg 113 (201)
T KOG1692|consen 87 KGTYTFCFSNKMSTMTPKTVMFTIHVG 113 (201)
T ss_pred CceEEEEecCCCCCCCceEEEEEEEEe
Confidence 9999999999888 555666666664
No 124
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=38.57 E-value=2e+02 Score=25.69 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCeeEEEEEEecCCCCC-eEEEEEeccccccccccCCCCCCcceeeeEeeCCceEEEEEeccCceEEEEeecCccceeEE
Q 043582 149 GSKLEISYNVKSPSSAP-LSLVIARGGESLEDWIDHPSCPKTTLSWNILYGSGKIQQKISKSSDYYIAVGNLNSQQVEMQ 227 (440)
Q Consensus 149 GS~i~isy~v~~~~~~~-l~lvi~~G~~~~~~w~~~p~~p~~tlsw~~i~g~g~~~~~i~~~~~Yyiav~Nln~~~v~v~ 227 (440)
|..+.+++++...+.++ ..+-.+||.++..+|+. .|...|. ....+.+-+..-++.+.+.|.++
T Consensus 13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~------------~~~~~g~---~~~~~~~r~tcs~~~s~ntv~L~ 77 (115)
T cd05721 13 NGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCA------------VTGNMSN---QLQTSLDGFNCDGTLGNEQVNFT 77 (115)
T ss_pred CCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEE------------EEeCCCc---cccccCCCeEEeEeCCCCEEEEE
Confidence 55699999998876677 88888898888668872 1122222 11123333445556666655433
Q ss_pred EEEEEeEEEEecccceeecccCCCceEEEeccC
Q 043582 228 LNFTMNVLVYNASKAYYRCSLGSGLCSLSLDPL 260 (440)
Q Consensus 228 l~~~i~~~~y~t~~a~~~cs~~~~~c~~~~~~~ 260 (440)
|+ -|.-.-.|.|. |+..++||
T Consensus 78 l~-----~L~a~DTa~Y~-------Ca~e~myP 98 (115)
T cd05721 78 LQ-----NLRANQTDIYF-------CKIELMYP 98 (115)
T ss_pred Ec-----CCCHHHCeEEE-------EEeeeccC
Confidence 31 22233336676 67777776
No 125
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=38.05 E-value=17 Score=36.27 Aligned_cols=25 Identities=28% Similarity=0.879 Sum_probs=21.8
Q ss_pred ccHhhHHHHhccCCccccccccccc
Q 043582 409 GCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 409 ~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
.|..|..++-++...||+|+.+-++
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcccc
Confidence 6999999999999999999986543
No 126
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=37.29 E-value=36 Score=36.95 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=14.9
Q ss_pred cCCCcEEEEcCCCCCCCCCCceeEEEe
Q 043582 259 PLGTTSAILTSPGPTKGTSSAKWYVKL 285 (440)
Q Consensus 259 ~~~~~~~vltsp~~~~~~~~d~w~v~l 285 (440)
.|+++..|+-.|...-. .|..+|
T Consensus 531 iPNSqiIViP~p~n~P~----hW~a~L 553 (606)
T KOG4550|consen 531 IPNSQIIVIPYPHNVPR----HWSAKL 553 (606)
T ss_pred cCCceEEEeCCCCCCCc----cceeeE
Confidence 56777777777766543 465555
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.86 E-value=14 Score=39.11 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=22.5
Q ss_pred cccccccccCcce----EEecCCCccccHhhHHHHhc
Q 043582 387 HLQVICCDAPRDC----FFLPCGHCAGCFTCGTRIAE 419 (440)
Q Consensus 387 ~~C~ICld~~rd~----v~lPCGH~~~C~~C~~~l~~ 419 (440)
..|.||+...... ...-|+|. +|..|..+...
T Consensus 147 ~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~ie 182 (384)
T KOG1812|consen 147 EECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQHIE 182 (384)
T ss_pred ccCccCccccccHhhhHHHhcccch-hhhHHhHHHhh
Confidence 4699999333222 24679998 89999886654
No 128
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=36.52 E-value=28 Score=29.37 Aligned_cols=8 Identities=0% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHhcCc
Q 043582 309 FRYCNMCR 316 (440)
Q Consensus 309 ~R~~~k~r 316 (440)
++.|++.+
T Consensus 27 ~ieYrk~~ 34 (81)
T PF00558_consen 27 YIEYRKIK 34 (81)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44455444
No 129
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.41 E-value=28 Score=41.37 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=32.3
Q ss_pred CccccccccccCcce----EEecCCCc--cccHhhHHHHhc-cCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDC----FFLPCGHC--AGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~----v~lPCGH~--~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
+.+.|.||-|..-.. .|.-|..+ ..|..|..-=.+ .++.||-|+++.++
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 346899998863221 55555543 269999854333 35789999998764
No 130
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=35.29 E-value=2e+02 Score=23.38 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.7
Q ss_pred EEEeecCCeeEEEEEEecC
Q 043582 143 LYFLNKGSKLEISYNVKSP 161 (440)
Q Consensus 143 ~y~LNkGS~i~isy~v~~~ 161 (440)
.++..+|+++.+.+.|.+.
T Consensus 10 ~~~~~~G~~v~L~C~~~g~ 28 (98)
T cd05758 10 TQYAILGDKGRVECFIFST 28 (98)
T ss_pred cEEEeCCCcEEEEEEEccc
Confidence 3557889999999999874
No 131
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=34.59 E-value=55 Score=28.04 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=36.9
Q ss_pred eCCceEEEEEeccCceEEEEeecCccceeEEEEEEEeEEEEecccceeecccCCCceEEEeccCCCcEEEEcCCCCCCCC
Q 043582 197 YGSGKIQQKISKSSDYYIAVGNLNSQQVEMQLNFTMNVLVYNASKAYYRCSLGSGLCSLSLDPLGTTSAILTSPGPTKGT 276 (440)
Q Consensus 197 ~g~g~~~~~i~~~~~Yyiav~Nln~~~v~v~l~~~i~~~~y~t~~a~~~cs~~~~~c~~~~~~~~~~~~vltsp~~~~~~ 276 (440)
+|.+..-..-..+.+ |+.|.+-+.+.++|.|. ++-+.+..-++-+..+|.=+..=.|.++..+.+++|+.+.
T Consensus 11 ~g~~~~~~~Atr~~d-y~~VY~~~Gr~~~vdl~-----~l~g~~~~a~WfdPR~G~~~~~g~~~~~~~~~F~pP~~~~-- 82 (93)
T PF12904_consen 11 NGERYDRIVATRGKD-YALVYTPTGRPFTVDLS-----KLSGKKVKAWWFDPRTGKYTYIGEFSNKGIQTFTPPSGGG-- 82 (93)
T ss_dssp --SGGG--EEEE-SS-EEEEEESS---EEEEGG-----GSS-SEEEEEEEETTT-BEEEEEEEES-SEEEE--SS-TT--
T ss_pred CCCCceeEEEEcCCC-EEEEECCCCCEEEEEcc-----cccCCceeEEEEcCCCCCEEEeeeecCCcceEecCCCCCC--
Confidence 455665555666666 77777888888887653 2222223334445555533332346677889999999822
Q ss_pred CCceeEEEe
Q 043582 277 SSAKWYVKL 285 (440)
Q Consensus 277 ~~d~w~v~l 285 (440)
..++|.+=|
T Consensus 83 ~g~DWVLVl 91 (93)
T PF12904_consen 83 KGNDWVLVL 91 (93)
T ss_dssp SS--EEEEE
T ss_pred cCCCEEEEE
Confidence 246887644
No 132
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=34.52 E-value=9.9 Score=24.46 Aligned_cols=22 Identities=32% Similarity=0.954 Sum_probs=15.0
Q ss_pred cHhhHHHHhccCCccccccccc
Q 043582 410 CFTCGTRIAEEGGTCPICRKKI 431 (440)
Q Consensus 410 C~~C~~~l~~~~~~CPICR~~I 431 (440)
|..|...+......||.|..++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 6666667766667788887653
No 133
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=34.41 E-value=49 Score=28.83 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCcccccccCCCCCCCC
Q 043582 288 GPRWITYFAGLGAMTILMFLAFRYCNMCRTTSGDGTGFQATDRGSQSPPLL 338 (440)
Q Consensus 288 ~~r~lt~I~Gl~~l~vL~~~l~R~~~k~re~~~e~~~~~l~~~~~eR~pll 338 (440)
.|...-.|.|+..+..+...+.++.++....+ .+.+....||+|++
T Consensus 51 QWIFAFvI~avlfv~sl~vav~~~~~r~~~~r-----~~~~~~d~EraPLL 96 (97)
T PF08611_consen 51 QWIFAFVIAAVLFVLSLVVAVPKWTGRDAFFR-----REAESTDRERAPLL 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccchhhh-----cccCCCcccccccc
Confidence 34333444455555555555555554432111 11123466778876
No 134
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=19 Score=38.50 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.1
Q ss_pred cccccccccCcc-eEEecCCCccccHhhHHHHhc
Q 043582 387 HLQVICCDAPRD-CFFLPCGHCAGCFTCGTRIAE 419 (440)
Q Consensus 387 ~~C~ICld~~rd-~v~lPCGH~~~C~~C~~~l~~ 419 (440)
-.|-||.+.... ++.++|||. +|..|......
T Consensus 71 ~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl~ 103 (444)
T KOG1815|consen 71 VQCGICVESYDGEIIGLGCGHP-FCPPCWTGYLG 103 (444)
T ss_pred ccCCcccCCCcchhhhcCCCcH-HHHHHHHHHhh
Confidence 469999998875 788999997 89999988654
No 135
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=32.40 E-value=1.2e+02 Score=24.47 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCCcceeeeEeeCCceEEEEEeccCceEEEEeecCccceeEEEEEEEeEEEEecccceeecccCCC----ceEEEeccC
Q 043582 186 CPKTTLSWNILYGSGKIQQKISKSSDYYIAVGNLNSQQVEMQLNFTMNVLVYNASKAYYRCSLGSG----LCSLSLDPL 260 (440)
Q Consensus 186 ~p~~tlsw~~i~g~g~~~~~i~~~~~Yyiav~Nln~~~v~v~l~~~i~~~~y~t~~a~~~cs~~~~----~c~~~~~~~ 260 (440)
+|.-+..|.- +|+ .|..++.+++.+........+..-.+.|+.+ -..-.+.|.|...|. .+++++.|+
T Consensus 10 ~P~P~v~W~k---~g~---~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~YtC~A~N~~G~~~~~~~~~~~ 81 (81)
T cd04971 10 NPKPTLTWYH---NGA---VLNESDYIRTEIHYEVTTPTEYHGCLQFDNP-THVNNGNYTLVASNEYGQDSKSISAHFM 81 (81)
T ss_pred eCCCcEEEEE---CCE---ECcCCCceeEEEEeecccccccEEEEEECCC-CcccCeEEEEEEEeCCCCeeeEEEeeeC
Confidence 4777788874 443 3334443333332221111122222333322 123448899976665 477777774
No 136
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.15 E-value=5.5e+02 Score=25.97 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.3
Q ss_pred EEEeecCCeeEEEEEEec
Q 043582 143 LYFLNKGSKLEISYNVKS 160 (440)
Q Consensus 143 ~y~LNkGS~i~isy~v~~ 160 (440)
=.-++-|=+++|.|.-+.
T Consensus 120 Cila~m~~ql~v~Y~~~~ 137 (306)
T PF01299_consen 120 CILAQMGIQLNVTYTTKD 137 (306)
T ss_pred EEEEeeeeEEEEEEEccc
Confidence 666777788888888753
No 137
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=31.38 E-value=31 Score=25.64 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=22.6
Q ss_pred cccccccCcc--eEEecCCCcc----ccHhhHHHHhc--cCCccccc
Q 043582 389 QVICCDAPRD--CFFLPCGHCA----GCFTCGTRIAE--EGGTCPIC 427 (440)
Q Consensus 389 C~ICld~~rd--~v~lPCGH~~----~C~~C~~~l~~--~~~~CPIC 427 (440)
|-||++...+ ..+.||+-.. .-..|..++.. ...+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7788875433 4778997321 24578888776 34679988
No 138
>PRK09774 fec operon regulator FecR; Reviewed
Probab=30.58 E-value=2.6e+02 Score=28.53 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=44.2
Q ss_pred ccceeeeeEEEecCCCcceeEEEeecCCeeEEEEEEecCCCCCeEEEEEeccccccccccCC-CCCCcceeeeEeeCCce
Q 043582 123 EFTWTETHIAVVPDDGHKEWLYFLNKGSKLEISYNVKSPSSAPLSLVIARGGESLEDWIDHP-SCPKTTLSWNILYGSGK 201 (440)
Q Consensus 123 ~~~w~~~~~~~v~~~s~k~w~y~LNkGS~i~isy~v~~~~~~~l~lvi~~G~~~~~~w~~~p-~~p~~tlsw~~i~g~g~ 201 (440)
.+.-.|.+.+.+|.+| .-+||.+|.|++.|+-.. . .+-+.+|+--|.- ..|| ..| +-+-.|.|.
T Consensus 112 ~T~~Ge~r~v~L~DGS----~v~Ln~~S~l~~~~~~~~---R--~v~L~~Gea~F~V-a~d~~~rP-----F~V~t~~~~ 176 (319)
T PRK09774 112 RTAKGEVSRQRLEDGS----LLTLNTQSAVDVRFDAHQ---R--TVRLWYGEIAITT-AKDALQRP-----FRVLTRQGQ 176 (319)
T ss_pred ecCCCceEEEEcCCCC----EEEEcCCCeEEEeecCCe---e--EEEEeccEEEEEE-cCCCCCCC-----EEEEeCCcE
Confidence 3555688999999998 578999999998776322 2 3444577776652 2355 344 555567777
Q ss_pred EE
Q 043582 202 IQ 203 (440)
Q Consensus 202 ~~ 203 (440)
|+
T Consensus 177 v~ 178 (319)
T PRK09774 177 LT 178 (319)
T ss_pred EE
Confidence 64
No 139
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.52 E-value=21 Score=26.98 Aligned_cols=13 Identities=31% Similarity=1.127 Sum_probs=6.6
Q ss_pred CCccccccccccc
Q 043582 421 GGTCPICRKKIKK 433 (440)
Q Consensus 421 ~~~CPICR~~I~~ 433 (440)
...||+|.+++..
T Consensus 20 ~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 20 KGCCPLCGRPLDE 32 (54)
T ss_dssp SEE-TTT--EE-H
T ss_pred CCcCCCCCCCCCH
Confidence 3489999998753
No 140
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.83 E-value=17 Score=38.69 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=13.8
Q ss_pred eeEEEeecCCeeEEEEEEecC
Q 043582 141 EWLYFLNKGSKLEISYNVKSP 161 (440)
Q Consensus 141 ~w~y~LNkGS~i~isy~v~~~ 161 (440)
--+|=|++.-.|-+.|.-.+.
T Consensus 74 sisytlsr~~~VvVEY~~D~~ 94 (416)
T PF04710_consen 74 SISYTLSRNQTVVVEYTHDPD 94 (416)
T ss_dssp EEEEE-SSSEEEEEEEEEETT
T ss_pred eEEEEecCCceeeeeeecCCC
Confidence 356777777777777776653
No 141
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=29.74 E-value=93 Score=31.84 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=6.3
Q ss_pred cccceeecccCC
Q 043582 239 ASKAYYRCSLGS 250 (440)
Q Consensus 239 t~~a~~~cs~~~ 250 (440)
...+.|.|....
T Consensus 171 ~~~~~nvC~~~~ 182 (278)
T PF06697_consen 171 NMTSPNVCSTSR 182 (278)
T ss_pred ccCCCceeeeec
Confidence 344566665443
No 142
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.29 E-value=17 Score=42.08 Aligned_cols=16 Identities=13% Similarity=-0.311 Sum_probs=8.3
Q ss_pred EEEeccCCCcEEEEcC
Q 043582 254 SLSLDPLGTTSAILTS 269 (440)
Q Consensus 254 ~~~~~~~~~~~~vlts 269 (440)
++-+.+..|.+.++|+
T Consensus 257 k~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 257 KEMLVFSFGLLLCVTT 272 (933)
T ss_pred EEEEEEecCEEEEEEc
Confidence 3344444466666555
No 143
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.86 E-value=48 Score=33.64 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=32.4
Q ss_pred Ccccccccc----ccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICC----DAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICl----d~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
....|+|=- +..+-+++.+|||+ +-..-..++. ...|++|.+....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccc
Confidence 346788764 34566688999997 6566555554 3689999998754
No 144
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.82 E-value=78 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 043582 289 PRWITYFAGLGAMTILMFLAFRYCNMCRT 317 (440)
Q Consensus 289 ~r~lt~I~Gl~~l~vL~~~l~R~~~k~re 317 (440)
..|+.+++++++++++++.+.+++++++.
T Consensus 15 ~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~ 43 (149)
T PF11694_consen 15 NDYLRYILIIILLLVLIFFFIKYLRNRLD 43 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45888888888899999999999998754
No 145
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=27 Score=31.99 Aligned_cols=24 Identities=38% Similarity=0.801 Sum_probs=18.5
Q ss_pred cccHhhHHHHhccCCccccccccccce
Q 043582 408 AGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 408 ~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
.||..|...-. ..||+|..+|+.-
T Consensus 29 afcskcgeati---~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHH---hcCCccCCccccc
Confidence 47888876654 4799999999763
No 146
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=26.33 E-value=67 Score=27.84 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=24.3
Q ss_pred eccchh---HHHHHHHHHHHHHHHHHHHHHHhcC
Q 043582 285 LSYGPR---WITYFAGLGAMTILMFLAFRYCNMC 315 (440)
Q Consensus 285 lSy~~r---~lt~I~Gl~~l~vL~~~l~R~~~k~ 315 (440)
++|+.| |+|++..+.+.+.+++++.+.|++-
T Consensus 62 ~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~KKe 95 (100)
T PF06363_consen 62 LSFVERNKAWFTVVSAVTSFISILLLVTKIFKKE 95 (100)
T ss_pred HHHHHHcchHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 467777 9999988888888787888777764
No 147
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=26.25 E-value=42 Score=35.11 Aligned_cols=38 Identities=26% Similarity=0.627 Sum_probs=21.6
Q ss_pred eEEecCCCccccHhhH--HHHhccCCccccccccccceeEe
Q 043582 399 CFFLPCGHCAGCFTCG--TRIAEEGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 399 ~v~lPCGH~~~C~~C~--~~l~~~~~~CPICR~~I~~virI 437 (440)
.+.+.|||+---..-. ..--.+..+||+||..= .++++
T Consensus 317 ~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~g-p~V~L 356 (429)
T KOG3842|consen 317 WVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVG-PYVPL 356 (429)
T ss_pred eEEEeccccccccccccccccCcccCcCCeeeeec-ceeee
Confidence 4889999974322221 11112346899999742 24444
No 148
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=25.87 E-value=42 Score=25.89 Aligned_cols=25 Identities=32% Similarity=0.711 Sum_probs=16.9
Q ss_pred cCCCccccHhhHHHHhccCCcccccc
Q 043582 403 PCGHCAGCFTCGTRIAEEGGTCPICR 428 (440)
Q Consensus 403 PCGH~~~C~~C~~~l~~~~~~CPICR 428 (440)
.|++. ||.+|..-+-..-..||.|.
T Consensus 26 ~C~~~-FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNH-FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT---B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCc-cccCcChhhhccccCCcCCC
Confidence 46775 89999988877778999985
No 149
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.75 E-value=91 Score=28.12 Aligned_cols=15 Identities=27% Similarity=0.113 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 043582 291 WITYFAGLGAMTILM 305 (440)
Q Consensus 291 ~lt~I~Gl~~l~vL~ 305 (440)
.+.+|+|.++-++++
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 344444444333333
No 150
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.60 E-value=35 Score=39.53 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=32.1
Q ss_pred cccccccccCcce-EEec---CCCccccHhhHHHHhcc------CCccccccccccce
Q 043582 387 HLQVICCDAPRDC-FFLP---CGHCAGCFTCGTRIAEE------GGTCPICRKKIKKV 434 (440)
Q Consensus 387 ~~C~ICld~~rd~-v~lP---CGH~~~C~~C~~~l~~~------~~~CPICR~~I~~v 434 (440)
..|.+|+..+.|. -..| |+|. +|..|+..+..+ ...|++|..-|...
T Consensus 100 ~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 100 PVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred chhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 4577777664443 3345 9997 899998877652 35789998766543
No 151
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.60 E-value=15 Score=32.24 Aligned_cols=44 Identities=25% Similarity=0.507 Sum_probs=27.9
Q ss_pred cccccccccc-----CcceEEecCCCccccHhhHHHHhcc-CCcccccccc
Q 043582 386 RHLQVICCDA-----PRDCFFLPCGHCAGCFTCGTRIAEE-GGTCPICRKK 430 (440)
Q Consensus 386 ~~~C~ICld~-----~rd~v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~ 430 (440)
...|.+|... .+......|+|. +|..|....... .-.|.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHHH
Confidence 3579999764 233566788887 789997763222 2369999764
No 152
>PRK01844 hypothetical protein; Provisional
Probab=24.47 E-value=1e+02 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 290 RWITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 290 r~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
.++.++..+++++..+|+.+|++.+.-
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677778888777653
No 153
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.26 E-value=36 Score=31.54 Aligned_cols=45 Identities=31% Similarity=0.625 Sum_probs=26.5
Q ss_pred CCccccccccccCcceEEecCCCcc------ccHhhHHHHhccC----Cccccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCA------GCFTCGTRIAEEG----GTCPICRKKI 431 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~------~C~~C~~~l~~~~----~~CPICR~~I 431 (440)
.++..|-||+... +.--|||.| +|..|..++...+ -.|-.||...
T Consensus 63 ~ddatC~IC~KTK---FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHKTK---FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhhcc---cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 3446899998532 223699985 3555555444321 2577777654
No 154
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=24.23 E-value=8.1e+02 Score=25.52 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=8.5
Q ss_pred CeeEEEEEEecC
Q 043582 150 SKLEISYNVKSP 161 (440)
Q Consensus 150 S~i~isy~v~~~ 161 (440)
-++.++|.+...
T Consensus 97 ~~~~~~Y~v~~~ 108 (511)
T PF09972_consen 97 HTYTISYTVKNA 108 (511)
T ss_pred EEEEEEEEEECc
Confidence 466788888773
No 155
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.22 E-value=39 Score=38.98 Aligned_cols=39 Identities=33% Similarity=0.601 Sum_probs=28.4
Q ss_pred cccccccccCcce--EEecCCCccccHhhHHHHhccCCcccc
Q 043582 387 HLQVICCDAPRDC--FFLPCGHCAGCFTCGTRIAEEGGTCPI 426 (440)
Q Consensus 387 ~~C~ICld~~rd~--v~lPCGH~~~C~~C~~~l~~~~~~CPI 426 (440)
..|.||.-..+.. +...|||+ .-..|+..+++....||-
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv-~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHV-GHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhcccccc-ccHHHHHHHHhcCCcCCC
Confidence 3466665444332 45789997 789999999998888883
No 156
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=23.25 E-value=86 Score=28.30 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=16.5
Q ss_pred EEEeccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 043582 282 YVKLSYGPRWITYFAGLGAMTILMFLAFRYCNM 314 (440)
Q Consensus 282 ~v~lSy~~r~lt~I~Gl~~l~vL~~~l~R~~~k 314 (440)
..+++.||-++.++ .+++++.+++..+|.+++
T Consensus 16 wwP~a~GWwll~~l-ll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 16 WWPLAPGWWLLLAL-LLLLLILLLWRLWRRWRR 47 (146)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 46778888444443 333444444444444444
No 157
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.22 E-value=38 Score=31.85 Aligned_cols=24 Identities=29% Similarity=0.742 Sum_probs=20.5
Q ss_pred cccHhhHHHHhccCCccccccccccce
Q 043582 408 AGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 408 ~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
.||..|..+.. ..||-|..+|++-
T Consensus 29 ~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 29 KFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 48999998877 4899999999874
No 158
>PRK11677 hypothetical protein; Provisional
Probab=22.99 E-value=86 Score=28.69 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043582 290 RWITYFAGLGAMTILMFLAFRYCNMC 315 (440)
Q Consensus 290 r~lt~I~Gl~~l~vL~~~l~R~~~k~ 315 (440)
-|+..++|+++-+++++++.|+....
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccch
Confidence 38888889988889999999886654
No 159
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.88 E-value=1.2e+02 Score=28.30 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 043582 293 TYFAGLGAMTILMFLA 308 (440)
Q Consensus 293 t~I~Gl~~l~vL~~~l 308 (440)
.+|+|++++++++.++
T Consensus 83 gvi~~Vi~Iv~~Iv~~ 98 (179)
T PF13908_consen 83 GVICGVIAIVVLIVCF 98 (179)
T ss_pred ehhhHHHHHHHhHhhh
Confidence 3444444444433333
No 160
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.69 E-value=94 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=19.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q 043582 286 SYGPRWITYFAGLGAMTILMFLAFR 310 (440)
Q Consensus 286 Sy~~r~lt~I~Gl~~l~vL~~~l~R 310 (440)
.-..+.+.++.|++++++|++.+.|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999888887766554
No 161
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=21.95 E-value=2.8e+02 Score=23.56 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=15.0
Q ss_pred EEEeecCCeeEEEEEEec
Q 043582 143 LYFLNKGSKLEISYNVKS 160 (440)
Q Consensus 143 ~y~LNkGS~i~isy~v~~ 160 (440)
+.+-++|.++++.+.+.+
T Consensus 10 s~~~~~G~~~~L~C~~~s 27 (98)
T cd05898 10 VQYAVRGERGKVKCFIGS 27 (98)
T ss_pred eEEEeCCCcEEEEEEEcc
Confidence 456789999999999966
No 162
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=21.70 E-value=2.2e+02 Score=30.26 Aligned_cols=144 Identities=15% Similarity=0.059 Sum_probs=72.2
Q ss_pred CcceeEEEeecCCeeEEEEEEecCCCCCeEEEEEeccccccc-cccCCCCCCccee----------eeEe-eCCceE--E
Q 043582 138 GHKEWLYFLNKGSKLEISYNVKSPSSAPLSLVIARGGESLED-WIDHPSCPKTTLS----------WNIL-YGSGKI--Q 203 (440)
Q Consensus 138 s~k~w~y~LNkGS~i~isy~v~~~~~~~l~lvi~~G~~~~~~-w~~~p~~p~~tls----------w~~i-~g~g~~--~ 203 (440)
+-+.|.|=.+-|+..+|-=+. -++|.+.+=++...+ |-.+--+||.+-. |.+- .|-|.+ .
T Consensus 161 k~~~~~ytv~~~n~~cv~~em------~~Qln~t~~~~~~~~~t~~~ninPN~t~atgsC~~h~~~l~L~~~~gs~l~~~ 234 (362)
T KOG4818|consen 161 KPTTGTYTVTNGNDTCVKAEM------GIQLNVTYVNRIGANVTSLININPNATSATGSCGSHTDPLLLSISGGSILNFV 234 (362)
T ss_pred cCCcCceeeecCCcceeeeec------cceeeEEEeeccCcceeeccccCCCccccCccccccccceeeeccccceEEEE
Confidence 345677766666665532221 233444443333332 5444455554421 2222 344444 5
Q ss_pred EEEe-ccCceEEEEeecCccceeEE----EEEEEeEEEEecc--cceeecccCCC---ceEEEeccCCCcEEEEcCCCCC
Q 043582 204 QKIS-KSSDYYIAVGNLNSQQVEMQ----LNFTMNVLVYNAS--KAYYRCSLGSG---LCSLSLDPLGTTSAILTSPGPT 273 (440)
Q Consensus 204 ~~i~-~~~~Yyiav~Nln~~~v~v~----l~~~i~~~~y~t~--~a~~~cs~~~~---~c~~~~~~~~~~~~vltsp~~~ 273 (440)
+.+. +++.||..+++......... +.....|+.+.++ +-.|+|+.... .=.+.+-....++-++.=+.-
T Consensus 235 f~~~~~~~~y~~~~~~~l~~~~P~a~~~~f~~~~~a~~~~qa~~G~SykC~~eQsi~ls~~~~v~~~~~~lqaf~v~~~- 313 (362)
T KOG4818|consen 235 FHSDYESSSYLSIVGADLDLVFPDAYIKTFQAINNALGDFQAPLGNSYKCSTEQSLLLSGALQVDTLDLRLQAFTVEVG- 313 (362)
T ss_pred eeeccchhhHHhhhhccccccCcchhhhHhHhhhhhhhhhccccCCceecCccceeeeccceEeeeeeeeEEEEEeeec-
Confidence 5555 44455555566665554444 5566666665554 38899988755 234444445555555554443
Q ss_pred CCCCCceeEEEeccc
Q 043582 274 KGTSSAKWYVKLSYG 288 (440)
Q Consensus 274 ~~~~~d~w~v~lSy~ 288 (440)
..++.++-.++.+-.
T Consensus 314 ~F~t~~ec~~d~siv 328 (362)
T KOG4818|consen 314 VFGTVQECEVDLNIV 328 (362)
T ss_pred cccccccccccccee
Confidence 333344444444443
No 163
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=20.77 E-value=68 Score=33.71 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=32.1
Q ss_pred cccccccccCcce---EEecCCCccccHhhHHHHhccCCcccccccc
Q 043582 387 HLQVICCDAPRDC---FFLPCGHCAGCFTCGTRIAEEGGTCPICRKK 430 (440)
Q Consensus 387 ~~C~ICld~~rd~---v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~ 430 (440)
..|-.|.++.... ..-.|.|. ||.+|..-+-..-..||.|..+
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred cceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcCCC
Confidence 4599996554443 44568886 9999998887766799999743
No 164
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=20.57 E-value=4.4e+02 Score=21.34 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=11.4
Q ss_pred eecCCeeEEEEEEecC
Q 043582 146 LNKGSKLEISYNVKSP 161 (440)
Q Consensus 146 LNkGS~i~isy~v~~~ 161 (440)
...|+.+.+.+.+.+.
T Consensus 13 ~~~G~~v~l~C~~~G~ 28 (98)
T cd05870 13 TVENGAATLSCKAEGE 28 (98)
T ss_pred EcCCCcEEEEEecccC
Confidence 4468888888877653
No 165
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=20.57 E-value=1.6e+02 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=21.2
Q ss_pred CcceeeeEeeCCceEEEEEe--ccCceEEEEe
Q 043582 188 KTTLSWNILYGSGKIQQKIS--KSSDYYIAVG 217 (440)
Q Consensus 188 ~~tlsw~~i~g~g~~~~~i~--~~~~Yyiav~ 217 (440)
+-.++|.+...+..|++++. ....-|+|||
T Consensus 4 ~~~l~w~~~~~~~~i~~~l~~~~~~~~w~aiG 35 (124)
T PF03351_consen 4 NFSLSWTVDGDNNTIEFELTGPANTNGWVAIG 35 (124)
T ss_pred eEEEEEEEECCCCEEEEEEEeccCCCCEEEEE
Confidence 34678888777777888887 4446777764
No 166
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.49 E-value=2.1e+02 Score=29.79 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=27.9
Q ss_pred cCCCcEEEEcCCCCCCCCCCceeEEEeccchhHHHHHHHHHHHHHHHHHHHHHH
Q 043582 259 PLGTTSAILTSPGPTKGTSSAKWYVKLSYGPRWITYFAGLGAMTILMFLAFRYC 312 (440)
Q Consensus 259 ~~~~~~~vltsp~~~~~~~~d~w~v~lSy~~r~lt~I~Gl~~l~vL~~~l~R~~ 312 (440)
..+.+||+++- +.|-+++|...-++.+++.++++.++..++++.+
T Consensus 22 ~~~~Gyv~i~~---------~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (409)
T TIGR00540 22 AGHQGYVLIET---------ANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFF 66 (409)
T ss_pred cCCCCeEEEEE---------CCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665 3699999987766666665555555555554443
Done!