Query 043582
Match_columns 440
No_of_seqs 274 out of 1238
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_B MDM4 protein; proto-onc 99.5 1.1E-14 3.8E-19 112.6 3.9 56 384-439 5-62 (63)
2 2vje_A E3 ubiquitin-protein li 99.4 3.9E-14 1.3E-18 109.8 3.6 54 386-439 8-63 (64)
3 2ea5_A Cell growth regulator w 99.4 7.3E-14 2.5E-18 109.8 4.3 54 382-439 11-64 (68)
4 2yho_A E3 ubiquitin-protein li 99.2 6.2E-12 2.1E-16 101.4 2.7 50 386-439 18-67 (79)
5 4ic3_A E3 ubiquitin-protein li 99.2 8.6E-12 3E-16 98.8 3.0 50 386-439 24-73 (74)
6 2ecg_A Baculoviral IAP repeat- 99.1 8.3E-12 2.9E-16 98.9 1.3 50 386-439 25-74 (75)
7 2d8t_A Dactylidin, ring finger 99.0 4.2E-10 1.4E-14 87.7 5.0 47 386-433 15-61 (71)
8 2ecn_A Ring finger protein 141 99.0 3.1E-10 1.1E-14 87.7 3.5 52 386-439 15-66 (70)
9 2ysl_A Tripartite motif-contai 98.9 9.6E-10 3.3E-14 85.3 6.2 48 385-433 19-69 (73)
10 2csy_A Zinc finger protein 183 98.9 7.2E-10 2.5E-14 88.3 5.3 48 385-433 14-61 (81)
11 2xeu_A Ring finger protein 4; 98.9 6E-10 2.1E-14 83.9 2.7 51 387-438 4-63 (64)
12 2ea6_A Ring finger protein 4; 98.9 9.1E-10 3.1E-14 84.1 3.3 47 386-433 15-68 (69)
13 1chc_A Equine herpes virus-1 r 98.9 7.9E-10 2.7E-14 84.8 2.8 50 387-437 6-56 (68)
14 2kiz_A E3 ubiquitin-protein li 98.8 2.3E-09 7.8E-14 82.6 4.9 50 385-435 13-65 (69)
15 2djb_A Polycomb group ring fin 98.8 2.2E-09 7.6E-14 83.7 4.8 49 385-434 14-63 (72)
16 3ng2_A RNF4, snurf, ring finge 98.8 7.3E-10 2.5E-14 85.4 2.0 52 386-438 10-70 (71)
17 4ayc_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 95.0 4.4 48 387-435 54-101 (138)
18 3t6p_A Baculoviral IAP repeat- 98.8 9.4E-10 3.2E-14 111.2 3.1 50 386-439 295-344 (345)
19 2ecm_A Ring finger and CHY zin 98.8 2E-09 6.9E-14 79.1 3.6 46 386-432 5-54 (55)
20 2ct2_A Tripartite motif protei 98.8 3.8E-09 1.3E-13 84.5 5.1 47 385-432 14-67 (88)
21 2ecw_A Tripartite motif-contai 98.8 4.7E-09 1.6E-13 82.9 5.5 47 386-433 19-71 (85)
22 2ep4_A Ring finger protein 24; 98.8 3.5E-09 1.2E-13 82.6 4.5 50 386-436 15-67 (74)
23 2ect_A Ring finger protein 126 98.8 4.5E-09 1.5E-13 82.8 4.8 48 385-433 14-64 (78)
24 2ecy_A TNF receptor-associated 98.8 3.8E-09 1.3E-13 80.9 3.9 48 385-433 14-62 (66)
25 2ecv_A Tripartite motif-contai 98.8 4E-09 1.4E-13 83.3 4.2 47 386-433 19-71 (85)
26 2yur_A Retinoblastoma-binding 98.7 6.6E-09 2.2E-13 81.7 4.4 47 385-432 14-63 (74)
27 1iym_A EL5; ring-H2 finger, ub 98.7 6.9E-09 2.4E-13 76.3 3.9 45 387-432 6-54 (55)
28 1x4j_A Ring finger protein 38; 98.7 6.4E-09 2.2E-13 81.6 3.7 48 385-433 22-72 (75)
29 2l0b_A E3 ubiquitin-protein li 98.7 7.7E-09 2.6E-13 84.6 4.4 49 384-433 38-89 (91)
30 1t1h_A Gspef-atpub14, armadill 98.7 1E-08 3.4E-13 80.8 4.7 48 385-433 7-55 (78)
31 2egp_A Tripartite motif-contai 98.7 4.6E-09 1.6E-13 82.5 2.0 47 386-433 12-65 (79)
32 2ysj_A Tripartite motif-contai 98.7 2.5E-08 8.7E-13 75.5 5.5 42 385-427 19-63 (63)
33 3ztg_A E3 ubiquitin-protein li 98.6 1.8E-08 6E-13 81.8 4.1 46 385-431 12-60 (92)
34 3fl2_A E3 ubiquitin-protein li 98.6 1.4E-08 4.9E-13 87.0 3.2 47 386-433 52-99 (124)
35 1g25_A CDK-activating kinase a 98.6 1.8E-08 6.1E-13 76.9 2.9 46 387-433 4-55 (65)
36 2y1n_A E3 ubiquitin-protein li 98.6 2.4E-08 8.1E-13 102.5 4.6 51 386-437 332-383 (389)
37 2ecj_A Tripartite motif-contai 98.6 3.3E-08 1.1E-12 73.1 4.2 42 385-427 14-58 (58)
38 2ckl_A Polycomb group ring fin 98.6 3.1E-08 1.1E-12 82.9 4.5 47 386-433 15-62 (108)
39 2y43_A E3 ubiquitin-protein li 98.6 2.3E-08 7.8E-13 82.4 3.5 47 386-433 22-69 (99)
40 3lrq_A E3 ubiquitin-protein li 98.6 1.8E-08 6.1E-13 83.8 2.6 47 386-433 22-70 (100)
41 1bor_A Transcription factor PM 98.6 9.6E-09 3.3E-13 77.0 0.9 45 385-433 5-49 (56)
42 1e4u_A Transcriptional repress 98.5 2.4E-08 8.2E-13 80.4 2.5 49 386-435 11-64 (78)
43 1jm7_A BRCA1, breast cancer ty 98.5 2.3E-08 7.7E-13 83.5 1.8 47 386-433 21-70 (112)
44 1z6u_A NP95-like ring finger p 98.5 4.7E-08 1.6E-12 87.5 3.2 48 385-433 77-125 (150)
45 2ckl_B Ubiquitin ligase protei 98.5 8.6E-08 2.9E-12 86.0 4.5 48 385-433 53-102 (165)
46 1v87_A Deltex protein 2; ring- 98.5 6.5E-08 2.2E-12 81.4 3.4 46 387-433 26-94 (114)
47 3l11_A E3 ubiquitin-protein li 98.5 2.8E-08 9.7E-13 84.0 1.1 47 386-433 15-62 (115)
48 4ap4_A E3 ubiquitin ligase RNF 98.4 6.8E-08 2.3E-12 82.0 3.1 47 386-433 7-60 (133)
49 3hct_A TNF receptor-associated 98.4 7.5E-08 2.6E-12 82.1 3.2 48 385-433 17-65 (118)
50 2ecl_A Ring-box protein 2; RNF 98.4 1.3E-07 4.6E-12 75.8 4.2 45 388-433 17-76 (81)
51 2kre_A Ubiquitin conjugation f 98.4 2.9E-07 1E-11 77.2 6.4 49 384-433 27-75 (100)
52 1wgm_A Ubiquitin conjugation f 98.4 2.8E-07 9.5E-12 77.1 6.1 49 384-433 20-69 (98)
53 1rmd_A RAG1; V(D)J recombinati 98.4 1.2E-07 4E-12 80.3 2.9 47 386-433 23-70 (116)
54 2kr4_A Ubiquitin conjugation f 98.4 3.4E-07 1.2E-11 74.3 4.9 48 385-433 13-60 (85)
55 4ap4_A E3 ubiquitin ligase RNF 98.3 1.7E-07 5.9E-12 79.5 3.0 52 386-438 72-132 (133)
56 3knv_A TNF receptor-associated 98.2 3.4E-07 1.2E-11 81.1 2.9 47 384-431 29-76 (141)
57 1jm7_B BARD1, BRCA1-associated 98.2 2.2E-07 7.6E-12 79.0 1.5 44 386-432 22-66 (117)
58 2c2l_A CHIP, carboxy terminus 98.2 7.7E-07 2.6E-11 84.4 4.5 49 384-433 206-255 (281)
59 3dpl_R Ring-box protein 1; ubi 98.2 1.2E-06 4.2E-11 74.4 4.5 45 387-432 38-100 (106)
60 3hcs_A TNF receptor-associated 98.1 1.4E-06 4.8E-11 78.3 3.2 48 385-433 17-65 (170)
61 2f42_A STIP1 homology and U-bo 97.9 5.5E-06 1.9E-10 76.7 3.9 51 382-433 102-153 (179)
62 2yu4_A E3 SUMO-protein ligase 97.9 7.2E-06 2.5E-10 67.5 3.8 44 386-430 7-59 (94)
63 4a0k_B E3 ubiquitin-protein li 97.8 2.6E-06 9.1E-11 73.8 0.4 44 387-431 49-110 (117)
64 2d8s_A Cellular modulator of i 97.7 2.7E-05 9.1E-10 63.0 3.7 46 387-433 16-70 (80)
65 3htk_C E3 SUMO-protein ligase 97.6 6.8E-05 2.3E-09 73.4 6.1 48 384-432 179-231 (267)
66 1wim_A KIAA0161 protein; ring 97.5 2.7E-05 9.4E-10 63.5 2.0 44 386-430 5-61 (94)
67 3vk6_A E3 ubiquitin-protein li 97.5 8.7E-05 3E-09 62.8 4.7 49 388-437 3-53 (101)
68 2bay_A PRE-mRNA splicing facto 97.3 8.9E-05 3E-09 56.8 2.5 45 387-432 4-49 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 96.6 0.0011 3.6E-08 50.7 2.6 48 385-432 5-58 (60)
70 2ct0_A Non-SMC element 1 homol 95.9 0.0076 2.6E-07 48.1 4.3 46 387-433 16-64 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.0026 8.9E-08 64.6 1.2 47 386-433 308-373 (381)
72 2ko5_A Ring finger protein Z; 91.6 0.084 2.9E-06 44.3 2.4 48 387-436 29-76 (99)
73 3nw0_A Non-structural maintena 83.3 0.94 3.2E-05 43.2 4.3 47 386-433 180-229 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 81.7 0.5 1.7E-05 38.3 1.5 30 387-417 4-36 (101)
75 2cs3_A Protein C14ORF4, MY039 77.4 1.5 5.1E-05 35.9 2.9 34 385-419 14-51 (93)
76 1weo_A Cellulose synthase, cat 64.1 5.6 0.00019 33.0 3.5 48 386-433 16-70 (93)
77 2ks1_B Epidermal growth factor 59.1 13 0.00046 26.7 4.4 27 290-316 13-39 (44)
78 2l2t_A Receptor tyrosine-prote 52.0 23 0.00077 25.6 4.6 26 291-316 13-38 (44)
79 2fiy_A Protein FDHE homolog; F 50.6 4.1 0.00014 40.4 0.7 47 384-430 180-231 (309)
80 2knc_A Integrin alpha-IIB; tra 50.5 24 0.00083 26.5 4.7 19 292-310 17-35 (54)
81 2zet_C Melanophilin; complex, 42.9 4.2 0.00015 36.4 -0.5 45 385-430 67-117 (153)
82 3m62_A Ubiquitin conjugation f 40.3 23 0.00079 40.3 4.7 52 382-433 887-938 (968)
83 2l9u_A Receptor tyrosine-prote 40.0 25 0.00085 24.4 3.1 26 291-316 9-34 (40)
84 2l8s_A Integrin alpha-1; trans 37.8 40 0.0014 25.3 4.2 20 291-310 13-32 (54)
85 2lx0_A Membrane fusion protein 37.1 50 0.0017 21.7 4.0 26 289-314 6-31 (32)
86 2a20_A Regulating synaptic mem 37.0 4.2 0.00014 31.3 -1.3 42 384-429 7-59 (62)
87 2jwa_A Receptor tyrosine-prote 36.0 46 0.0016 24.0 4.1 28 289-316 12-39 (44)
88 1a2y_B IGG1-kappa D1.3 FV (hea 30.4 1.9E+02 0.0066 22.5 8.1 16 146-161 12-27 (116)
89 2jne_A Hypothetical protein YF 30.3 7.8 0.00027 32.6 -0.8 43 387-435 33-75 (101)
90 3i2d_A E3 SUMO-protein ligase 30.2 27 0.00093 35.5 2.9 45 387-432 250-299 (371)
91 2bem_A CBP21; chitin-binding p 29.5 2.4E+02 0.0083 25.3 8.9 51 118-194 57-110 (170)
92 4fo9_A E3 SUMO-protein ligase 27.8 32 0.0011 34.8 3.0 45 387-432 216-265 (360)
93 1z60_A TFIIH basal transcripti 25.9 47 0.0016 25.2 2.9 40 388-428 17-59 (59)
94 2kaf_A Non-structural protein 25.7 17 0.00057 27.8 0.3 21 136-158 13-43 (67)
95 1zbd_B Rabphilin-3A; G protein 25.6 7.6 0.00026 34.0 -1.8 44 386-430 55-107 (134)
96 3ux9_B SCFV antibody; five hel 25.5 2.5E+02 0.0085 24.5 8.3 32 240-271 224-255 (256)
97 1sq2_N Novel antigen receptor; 24.6 2E+02 0.0068 22.5 6.7 16 146-161 12-27 (113)
98 3k1k_C Enhancer; nanobody, ant 24.0 2.8E+02 0.0097 22.3 8.0 16 146-161 14-29 (123)
99 3nfg_A DNA-directed RNA polyme 23.9 1.2E+02 0.0042 25.3 5.4 26 201-226 57-88 (102)
100 1jmu_B Protein MU-1; protein-p 22.7 1.2E+02 0.004 32.8 6.0 49 133-181 306-372 (666)
101 1yc7_A Anti-VSG immunoglobulin 22.4 3E+02 0.01 22.0 8.4 30 240-269 89-118 (124)
102 2klu_A T-cell surface glycopro 22.1 1.1E+02 0.0037 24.0 4.3 18 294-311 12-29 (70)
103 3u6r_L Antibody 1:7 (light cha 21.9 2.8E+02 0.0096 23.2 7.5 16 146-161 12-27 (143)
104 1n10_A PHL P I, pollen allerge 21.2 2.4E+02 0.0082 26.7 7.5 81 187-267 129-224 (241)
105 1m3v_A FLIN4, fusion of the LI 21.1 55 0.0019 27.1 2.7 46 387-433 33-81 (122)
106 1mm2_A MI2-beta; PHD, zinc fin 20.9 33 0.0011 25.6 1.1 10 422-431 48-57 (61)
107 2k9j_B Integrin beta-3; transm 20.0 83 0.0028 22.2 3.0 27 290-316 12-38 (43)
No 1
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.49 E-value=1.1e-14 Score=112.55 Aligned_cols=56 Identities=38% Similarity=0.806 Sum_probs=50.9
Q ss_pred CCccccccccccCcceEEe--cCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 384 NPRHLQVICCDAPRDCFFL--PCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~l--PCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
+....|+||++++++.+++ ||||.++|..|+.++.+....||+||++|..++++|.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 3445799999999999888 9999999999999998777899999999999999996
No 2
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.44 E-value=3.9e-14 Score=109.84 Aligned_cols=54 Identities=28% Similarity=0.713 Sum_probs=50.1
Q ss_pred ccccccccccCcceEEe--cCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 386 RHLQVICCDAPRDCFFL--PCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~l--PCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
+..|+||++++++.+++ ||||.++|..|+.++.+.+..||+||++|..++++|.
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 35699999999999988 9999999999999998877899999999999999995
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.3e-14 Score=109.84 Aligned_cols=54 Identities=22% Similarity=0.538 Sum_probs=48.1
Q ss_pred CCCCccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 382 NSNPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 382 ~~~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
...+...|+||++++++++++||||.++|..|+..+ ..||+||++|..++++|.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSG 64 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeec
Confidence 334556899999999999999999999999999975 689999999999999884
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.18 E-value=6.2e-12 Score=101.42 Aligned_cols=50 Identities=30% Similarity=0.980 Sum_probs=46.1
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
...|+||++..++++++||||.++|..|+..+ ..||+||++|..++++|.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEe
Confidence 35799999999999999999999999999987 489999999999999884
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.17 E-value=8.6e-12 Score=98.84 Aligned_cols=50 Identities=34% Similarity=0.764 Sum_probs=46.3
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
+..|+||++..++.+++||||.++|..|+..+ ..||+||++|...+++|.
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence 45799999999999999999998999999887 689999999999999984
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=8.3e-12 Score=98.92 Aligned_cols=50 Identities=36% Similarity=0.798 Sum_probs=45.7
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
...|+||++..++.+++||||.++|..|+..+ ..||+||++|...+++|.
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence 45799999999999999999998999999765 689999999999999884
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.2e-10 Score=87.66 Aligned_cols=47 Identities=28% Similarity=0.559 Sum_probs=42.6
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
...|+||++..++.+.+||||. ||..|...+......||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4579999999999999999998 9999999988777899999999864
No 8
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.1e-10 Score=87.72 Aligned_cols=52 Identities=29% Similarity=0.650 Sum_probs=45.7
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
...|+||++...+ +++||||. ||..|...+......||+||+++.....+|.
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 4579999999999 99999998 9999999988878899999999987666553
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=9.6e-10 Score=85.31 Aligned_cols=48 Identities=31% Similarity=0.660 Sum_probs=41.7
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhc---cCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE---EGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~---~~~~CPICR~~I~~ 433 (440)
+...|+||++...+.+.+||||. ||..|...+.+ ....||+||+++..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34679999999999999999998 89999999885 34589999998864
No 10
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.2e-10 Score=88.27 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=43.0
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
....|+||++..++.+++||||. ||..|...+.+....||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccc
Confidence 34579999999999999999997 8999999998877899999999864
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.88 E-value=6e-10 Score=83.89 Aligned_cols=51 Identities=33% Similarity=0.645 Sum_probs=43.6
Q ss_pred cccccccccCcce-------EEecCCCccccHhhHHHHhccCCcccccccccc--ceeEee
Q 043582 387 HLQVICCDAPRDC-------FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK--KVRKIF 438 (440)
Q Consensus 387 ~~C~ICld~~rd~-------v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~--~virIf 438 (440)
..|+||++...+. +.+||||. +|..|..++.+....||+||+++. .+.++|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 4699999977654 88999997 899999999887889999999986 466666
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=9.1e-10 Score=84.09 Aligned_cols=47 Identities=34% Similarity=0.627 Sum_probs=40.7
Q ss_pred ccccccccccCcce-------EEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 386 RHLQVICCDAPRDC-------FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~-------v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
...|.||++...+. +++||||. ||..|...+.+....||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 45799999977665 88999996 8999999998877899999998864
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.86 E-value=7.9e-10 Score=84.81 Aligned_cols=50 Identities=32% Similarity=0.737 Sum_probs=44.0
Q ss_pred cccccccccCcc-eEEecCCCccccHhhHHHHhccCCccccccccccceeEe
Q 043582 387 HLQVICCDAPRD-CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 387 ~~C~ICld~~rd-~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virI 437 (440)
..|+||++...+ .+.+||||. ||..|...+.+....||+||+++...++.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 469999999988 488999998 99999999888778999999999877654
No 14
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=2.3e-09 Score=82.60 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=41.6
Q ss_pred CccccccccccC---cceEEecCCCccccHhhHHHHhccCCcccccccccccee
Q 043582 385 PRHLQVICCDAP---RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVR 435 (440)
Q Consensus 385 ~~~~C~ICld~~---rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vi 435 (440)
....|.||++.. ...+.+||||. ||..|...+......||+||+.+....
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345799997654 55788999997 899999999887789999999987654
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.2e-09 Score=83.74 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=42.8
Q ss_pred CccccccccccCcceEEe-cCCCccccHhhHHHHhccCCccccccccccce
Q 043582 385 PRHLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEEGGTCPICRKKIKKV 434 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~~~~CPICR~~I~~v 434 (440)
+...|+||++...+.+.+ ||||. ||..|...+.+....||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 346799999999998887 99997 89999999887778999999998753
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.84 E-value=7.3e-10 Score=85.41 Aligned_cols=52 Identities=33% Similarity=0.631 Sum_probs=43.5
Q ss_pred ccccccccccCcce-------EEecCCCccccHhhHHHHhccCCcccccccccc--ceeEee
Q 043582 386 RHLQVICCDAPRDC-------FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK--KVRKIF 438 (440)
Q Consensus 386 ~~~C~ICld~~rd~-------v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~--~virIf 438 (440)
...|+||++...+. +.+||||. ||..|...+.+....||+||+++. .+.++|
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 35699999987665 89999997 899999999887889999999986 355555
No 17
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.84 E-value=1.6e-09 Score=95.05 Aligned_cols=48 Identities=31% Similarity=0.561 Sum_probs=43.4
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhccCCcccccccccccee
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVR 435 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vi 435 (440)
..|+||++...+++++||||. ||..|...+......||+||+++....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 469999999999999999996 999999999888889999999987643
No 18
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.83 E-value=9.4e-10 Score=111.20 Aligned_cols=50 Identities=34% Similarity=0.794 Sum_probs=46.1
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeEeeE
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRKIFT 439 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~virIf~ 439 (440)
+..|+||++..++++++||||.++|..|+..+ ..||+||++|...+++|.
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence 46899999999999999999999999999987 689999999999999984
No 19
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.82 E-value=2e-09 Score=79.06 Aligned_cols=46 Identities=30% Similarity=0.579 Sum_probs=40.0
Q ss_pred ccccccccccCcc----eEEecCCCccccHhhHHHHhccCCcccccccccc
Q 043582 386 RHLQVICCDAPRD----CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 386 ~~~C~ICld~~rd----~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
...|+||++...+ .+++||||. ||..|...+.+....||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3469999998755 788999996 899999999887789999999875
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=3.8e-09 Score=84.48 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=40.5
Q ss_pred CccccccccccCcc----eEEecCCCccccHhhHHHHhccC---Ccccccccccc
Q 043582 385 PRHLQVICCDAPRD----CFFLPCGHCAGCFTCGTRIAEEG---GTCPICRKKIK 432 (440)
Q Consensus 385 ~~~~C~ICld~~rd----~v~lPCGH~~~C~~C~~~l~~~~---~~CPICR~~I~ 432 (440)
+...|+||++...+ .+.+||||. ||..|...+.+.. ..||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34579999999888 899999997 8999999988754 78999999764
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.80 E-value=4.7e-09 Score=82.88 Aligned_cols=47 Identities=28% Similarity=0.491 Sum_probs=41.4
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhcc------CCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE------GGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~------~~~CPICR~~I~~ 433 (440)
...|+||++...+.+.+||||. ||..|...+... ...||+||+.+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4579999999999999999997 899999988765 5689999999863
No 22
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3.5e-09 Score=82.60 Aligned_cols=50 Identities=20% Similarity=0.449 Sum_probs=41.5
Q ss_pred ccccccccccC---cceEEecCCCccccHhhHHHHhccCCccccccccccceeE
Q 043582 386 RHLQVICCDAP---RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRK 436 (440)
Q Consensus 386 ~~~C~ICld~~---rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vir 436 (440)
...|.||++.. .....+||||. ||..|...+.+....||+||+++....+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 45799999875 34566799997 9999999998877899999999877654
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.78 E-value=4.5e-09 Score=82.78 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=39.8
Q ss_pred CccccccccccC---cceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAP---RDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~---rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
....|.||++.. .....+||||. ||..|..++.+....||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 345799997654 44577899997 8999999998877899999999865
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.8e-09 Score=80.94 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=41.6
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhc-cCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
+...|+||++..++.+.+||||. +|..|...+.. ....||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34679999999999988999997 89999999884 45689999999864
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4e-09 Score=83.29 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=41.2
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhcc------CCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE------GGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~------~~~CPICR~~I~~ 433 (440)
...|+||++..++.+.+||||. ||..|...+... ...||+||+.+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4579999999999999999997 899999988765 6799999999863
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.74 E-value=6.6e-09 Score=81.70 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=40.9
Q ss_pred CccccccccccCcceEEec-CCCccccHhhHHHHhccC--Ccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLP-CGHCAGCFTCGTRIAEEG--GTCPICRKKIK 432 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lP-CGH~~~C~~C~~~l~~~~--~~CPICR~~I~ 432 (440)
+...|+||++...+.+.+| |||. ||..|...+.+.. ..||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3467999999999999999 9997 8999999988754 58999999754
No 27
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.72 E-value=6.9e-09 Score=76.31 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=39.1
Q ss_pred cccccccccCcc---eEEec-CCCccccHhhHHHHhccCCcccccccccc
Q 043582 387 HLQVICCDAPRD---CFFLP-CGHCAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~rd---~v~lP-CGH~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
..|.||++...+ .+.+| |||. ||..|...+.+.+..||+||+++.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 469999998766 67887 9997 899999999888889999998763
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=6.4e-09 Score=81.60 Aligned_cols=48 Identities=29% Similarity=0.508 Sum_probs=40.0
Q ss_pred CccccccccccCcc---eEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAPRD---CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd---~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
+...|+||++...+ +..+||||. ||..|...+.+....||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34579999976544 488999997 9999999998878899999998864
No 29
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.71 E-value=7.7e-09 Score=84.64 Aligned_cols=49 Identities=29% Similarity=0.539 Sum_probs=41.7
Q ss_pred CCccccccccccCcc---eEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 384 NPRHLQVICCDAPRD---CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~rd---~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
.....|.||++...+ .+.+||||. ||..|...+.+....||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345679999987666 788999996 9999999998888899999998754
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.71 E-value=1e-08 Score=80.76 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=42.5
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
+...|+||++..++.+.+||||. ||..|...+... ...||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 34679999999999999999997 899999998876 6789999999853
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.68 E-value=4.6e-09 Score=82.48 Aligned_cols=47 Identities=28% Similarity=0.529 Sum_probs=40.8
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhcc-------CCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE-------GGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~-------~~~CPICR~~I~~ 433 (440)
...|+||++...+.+.+||||. ||..|...+... ...||+||+.+..
T Consensus 12 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4579999999999999999997 899999987765 5689999998853
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=2.5e-08 Score=75.48 Aligned_cols=42 Identities=33% Similarity=0.660 Sum_probs=36.8
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhc---cCCccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE---EGGTCPIC 427 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~---~~~~CPIC 427 (440)
+...|+||++...+.+.+||||. ||..|..++.+ ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 34679999999999999999998 89999999886 34589998
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=81.77 Aligned_cols=46 Identities=33% Similarity=0.639 Sum_probs=40.0
Q ss_pred CccccccccccCcceEEec-CCCccccHhhHHHHhcc--CCccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLP-CGHCAGCFTCGTRIAEE--GGTCPICRKKI 431 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lP-CGH~~~C~~C~~~l~~~--~~~CPICR~~I 431 (440)
+...|+||++...+.+.+| |||. ||..|...+... ...||+||+.+
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3467999999999999999 9997 899999888753 35899999986
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=87.04 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=41.1
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccC-Cccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I~~ 433 (440)
...|+||++...+.+.+||||. ||..|...+.... ..||+||+++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999999999999999997 8999998887643 499999999865
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.8e-08 Score=76.90 Aligned_cols=46 Identities=26% Similarity=0.514 Sum_probs=36.3
Q ss_pred cccccccc-cCcce----EEecCCCccccHhhHHHHhc-cCCccccccccccc
Q 043582 387 HLQVICCD-APRDC----FFLPCGHCAGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld-~~rd~----v~lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
..|+||++ ...+. +++||||. +|..|..++.. ....||+||+++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 46999999 33333 56899997 89999999854 34689999999864
No 36
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.59 E-value=2.4e-08 Score=102.50 Aligned_cols=51 Identities=41% Similarity=0.778 Sum_probs=44.9
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhc-cCCccccccccccceeEe
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE-EGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~~virI 437 (440)
...|+||++..++++++||||. +|..|...+.. ....||+||+++.....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 3579999999999999999998 79999988876 568999999999886654
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.3e-08 Score=73.09 Aligned_cols=42 Identities=29% Similarity=0.609 Sum_probs=36.3
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhc---cCCccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAE---EGGTCPIC 427 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~---~~~~CPIC 427 (440)
+...|.||++..++.+.+||||. ||..|...+.. ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 34579999999999999999998 89999999843 45789998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.59 E-value=3.1e-08 Score=82.94 Aligned_cols=47 Identities=32% Similarity=0.568 Sum_probs=42.5
Q ss_pred ccccccccccCcceEEe-cCCCccccHhhHHHHhccCCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
...|+||++...+.+.+ ||||. ||..|...+......||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 45799999999999998 99997 8999999998877899999999874
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.58 E-value=2.3e-08 Score=82.40 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=42.2
Q ss_pred ccccccccccCcceEEe-cCCCccccHhhHHHHhccCCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
...|+||++...+.+.+ ||||. ||..|...+...+..||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45799999999999888 99997 8999999998877899999998864
No 40
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=83.83 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=41.7
Q ss_pred ccccccccccCcceEE-ecCCCccccHhhHHHHhccC-Cccccccccccc
Q 043582 386 RHLQVICCDAPRDCFF-LPCGHCAGCFTCGTRIAEEG-GTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~-lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I~~ 433 (440)
...|+||++...+.+. ++|||. ||..|...+.... ..||+||+++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4579999999999999 999997 8999999988766 699999999753
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=9.6e-09 Score=77.01 Aligned_cols=45 Identities=27% Similarity=0.435 Sum_probs=38.3
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
+...|.||++...+.+.+||||. ||..|... ....||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSS---SSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHcc---CCCCCCcCCcEeec
Confidence 34679999999999999999997 89999876 24689999998753
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.54 E-value=2.4e-08 Score=80.45 Aligned_cols=49 Identities=35% Similarity=0.638 Sum_probs=39.4
Q ss_pred ccccccccccC--cceEEec--CCCccccHhhHHHHhc-cCCcccccccccccee
Q 043582 386 RHLQVICCDAP--RDCFFLP--CGHCAGCFTCGTRIAE-EGGTCPICRKKIKKVR 435 (440)
Q Consensus 386 ~~~C~ICld~~--rd~v~lP--CGH~~~C~~C~~~l~~-~~~~CPICR~~I~~vi 435 (440)
+..|+||++.. .+..++| |||. +|..|..+++. ....||+||+++....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45799999976 4567776 9997 99999999874 3468999999987643
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=2.3e-08 Score=83.52 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=40.6
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhccC---Cccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG---GTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~---~~CPICR~~I~~ 433 (440)
...|+||++..++.+.+||||. ||..|...+.... ..||+||+.+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3579999999999999999997 8999999988754 389999998863
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.49 E-value=4.7e-08 Score=87.48 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=42.0
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccC-Cccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I~~ 433 (440)
+...|+||++...+.+.+||||. ||..|...+.... ..||+||+.+..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 34689999999999999999997 8999999988754 389999999874
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.47 E-value=8.6e-08 Score=86.03 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=41.7
Q ss_pred CccccccccccCcceEEe-cCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
+...|+||++...+.+.+ ||||. ||..|...+... ...||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 346899999999999887 99997 899999998875 6789999999853
No 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.47 E-value=6.5e-08 Score=81.37 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=36.9
Q ss_pred cccccccccCcc------------------eEEecCCCccccHhhHHHHh-----ccCCccccccccccc
Q 043582 387 HLQVICCDAPRD------------------CFFLPCGHCAGCFTCGTRIA-----EEGGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~rd------------------~v~lPCGH~~~C~~C~~~l~-----~~~~~CPICR~~I~~ 433 (440)
..|+||++...+ +.++||||. ||..|...+. .....||+||+.+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 469999987543 338899997 9999999988 345699999998754
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.47 E-value=2.8e-08 Score=83.99 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=41.1
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
...|+||++...+.+.+||||. ||..|...+... ...||+||+.+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4579999999999999999997 899999888765 5689999998753
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.45 E-value=6.8e-08 Score=82.03 Aligned_cols=47 Identities=34% Similarity=0.627 Sum_probs=41.3
Q ss_pred ccccccccccCcce-------EEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 386 RHLQVICCDAPRDC-------FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~-------v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
...|+||++...+. +.+||||. ||..|..++.+.+..||+||+.+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 35699999987776 99999996 9999999998888899999999864
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.44 E-value=7.5e-08 Score=82.08 Aligned_cols=48 Identities=27% Similarity=0.551 Sum_probs=41.7
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCC-ccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGG-TCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~-~CPICR~~I~~ 433 (440)
+...|+||++...+.+.+||||. ||..|...+..... .||+||+++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34679999999999999999997 89999988876544 99999999865
No 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.3e-07 Score=75.81 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=35.5
Q ss_pred ccccccccCcc--------------eEEe-cCCCccccHhhHHHHhccCCccccccccccc
Q 043582 388 LQVICCDAPRD--------------CFFL-PCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 388 ~C~ICld~~rd--------------~v~l-PCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
.|.||++...+ .+.+ +|||. |+..|..++.+....||+||+++..
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 47777765543 4444 59997 8999999998888899999998753
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.43 E-value=2.9e-07 Score=77.21 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=44.1
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
.+...|+||++-.++.+.+||||. +|..|...++.....||+||+++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 445789999999999999999997 8999999999877899999998753
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.42 E-value=2.8e-07 Score=77.10 Aligned_cols=49 Identities=18% Similarity=0.048 Sum_probs=43.9
Q ss_pred CCccccccccccCcceEEecCC-CccccHhhHHHHhccCCccccccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLPCG-HCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCG-H~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
.++..|+||++-.++.+.+||| |. ||..|...++.....||+||+++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3457899999999999999999 97 8999999998877899999998753
No 53
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.38 E-value=1.2e-07 Score=80.27 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=41.6
Q ss_pred ccccccccccCcceEEecCCCccccHhhHHHHhcc-CCccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEE-GGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~I~~ 433 (440)
...|+||++...+.+.+||||. ||..|...+... ...||+||+++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3579999999999999999997 899999988875 5799999999864
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.35 E-value=3.4e-07 Score=74.34 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=43.3
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
+...|+||++-.++.+.+||||. +|..|...++.....||+||+++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45789999999999999999997 8999999998877899999998753
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.34 E-value=1.7e-07 Score=79.49 Aligned_cols=52 Identities=33% Similarity=0.631 Sum_probs=44.1
Q ss_pred ccccccccccCcce-------EEecCCCccccHhhHHHHhccCCcccccccccc--ceeEee
Q 043582 386 RHLQVICCDAPRDC-------FFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK--KVRKIF 438 (440)
Q Consensus 386 ~~~C~ICld~~rd~-------v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~--~virIf 438 (440)
...|.||++...+. +.++|||. ||..|...+.+....||+||+.+. .+.++|
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 45699999876664 88999997 999999999888889999999986 466766
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.25 E-value=3.4e-07 Score=81.14 Aligned_cols=47 Identities=28% Similarity=0.526 Sum_probs=40.9
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhccC-Cccccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKI 431 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I 431 (440)
.++..|+||++..++.+.++|||. ||..|...+.+.. ..||+||+++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345689999999999999999997 8999999988754 4899999975
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=2.2e-07 Score=79.03 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=39.5
Q ss_pred ccccccccccCcceEEe-cCCCccccHhhHHHHhccCCcccccccccc
Q 043582 386 RHLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
...|+||++...+.+.+ ||||. ||..|...+.. ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 46799999999999999 99997 89999998876 68999999884
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=7.7e-07 Score=84.37 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=42.5
Q ss_pred CCccccccccccCcceEEecCCCccccHhhHHHHhccC-Cccccccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKIKK 433 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I~~ 433 (440)
.+...|+||++-.++.+.+||||. ||..|...+.... ..||+||+++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456789999999999999999997 8999999988753 459999999863
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.17 E-value=1.2e-06 Score=74.41 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=37.3
Q ss_pred cccccccccCcc------------------eEEecCCCccccHhhHHHHhccCCcccccccccc
Q 043582 387 HLQVICCDAPRD------------------CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~rd------------------~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
..|.||++...+ .+.+||||. |+..|...+......||+||+...
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 469999876543 467899997 899999999888889999999853
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.08 E-value=1.4e-06 Score=78.30 Aligned_cols=48 Identities=25% Similarity=0.496 Sum_probs=41.7
Q ss_pred CccccccccccCcceEEecCCCccccHhhHHHHhccC-Cccccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKIKK 433 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I~~ 433 (440)
+...|+||++..++.+.+||||. ||..|...+...+ ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 44689999999999999999997 8999999887643 499999999865
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.91 E-value=5.5e-06 Score=76.73 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=43.7
Q ss_pred CCCCccccccccccCcceEEecCCCccccHhhHHHHhccC-Cccccccccccc
Q 043582 382 NSNPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEG-GTCPICRKKIKK 433 (440)
Q Consensus 382 ~~~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~-~~CPICR~~I~~ 433 (440)
..++...|+||++-.++.+++||||. +|..|...+.... ..||+||+++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34567899999999999999999997 8999999988753 469999998754
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=7.2e-06 Score=67.50 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=38.2
Q ss_pred ccccccccccCcceEEec-CCCccccHhhHHHHhccC------Ccccc--cccc
Q 043582 386 RHLQVICCDAPRDCFFLP-CGHCAGCFTCGTRIAEEG------GTCPI--CRKK 430 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lP-CGH~~~C~~C~~~l~~~~------~~CPI--CR~~ 430 (440)
...|+||++-.++.+.+| |||. ||..|...++... ..||+ |+..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 467999999999999997 9997 8999999988642 48999 9855
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.84 E-value=2.6e-06 Score=73.83 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=0.0
Q ss_pred cccccccccCcc------------------eEEecCCCccccHhhHHHHhccCCccccccccc
Q 043582 387 HLQVICCDAPRD------------------CFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKI 431 (440)
Q Consensus 387 ~~C~ICld~~rd------------------~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I 431 (440)
..|.||++...+ ++.+||||. |+..|...+.+.+..||+||++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 479999987543 233699997 89999999988888999999985
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=2.7e-05 Score=62.96 Aligned_cols=46 Identities=17% Similarity=0.399 Sum_probs=36.5
Q ss_pred cccccccccC--cceEEecCC-----CccccHhhHHHHhccC--Cccccccccccc
Q 043582 387 HLQVICCDAP--RDCFFLPCG-----HCAGCFTCGTRIAEEG--GTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~--rd~v~lPCG-----H~~~C~~C~~~l~~~~--~~CPICR~~I~~ 433 (440)
..|.||++.. .+.+++||+ |. +...|..++...+ ..||+||..+..
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4699999754 345779996 97 8999999987753 589999998754
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.59 E-value=6.8e-05 Score=73.40 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=41.0
Q ss_pred CCccccccccccCcceEEe-cCCCccccHhhHHHHhccC--Ccccc--cccccc
Q 043582 384 NPRHLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEEG--GTCPI--CRKKIK 432 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~~--~~CPI--CR~~I~ 432 (440)
.....|+||++-.++.+.. .|||. ||..|...++... ..||+ ||+.+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456899999999999985 99996 9999999998753 47999 999774
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.53 E-value=2.7e-05 Score=63.53 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=33.3
Q ss_pred ccccccccccCcceE--E-ecCCCccccHhhHHHHhcc--------CCcccc--cccc
Q 043582 386 RHLQVICCDAPRDCF--F-LPCGHCAGCFTCGTRIAEE--------GGTCPI--CRKK 430 (440)
Q Consensus 386 ~~~C~ICld~~rd~v--~-lPCGH~~~C~~C~~~l~~~--------~~~CPI--CR~~ 430 (440)
...|.||++...... . .+|||. ||..|....... ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356999998765432 2 389997 999998877652 248999 9988
No 67
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.49 E-value=8.7e-05 Score=62.85 Aligned_cols=49 Identities=18% Similarity=0.511 Sum_probs=37.9
Q ss_pred ccccccccCcc-eEEecCCCccccHhhHHHHhc-cCCccccccccccceeEe
Q 043582 388 LQVICCDAPRD-CFFLPCGHCAGCFTCGTRIAE-EGGTCPICRKKIKKVRKI 437 (440)
Q Consensus 388 ~C~ICld~~rd-~v~lPCGH~~~C~~C~~~l~~-~~~~CPICR~~I~~virI 437 (440)
.|.+|--.... ...+||+|+ ||.+|+..+.+ ..+.||+||.+|.++-++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 58888543332 377899995 99999998864 457999999999987664
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.32 E-value=8.9e-05 Score=56.83 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=40.9
Q ss_pred cccccccccCcceEEe-cCCCccccHhhHHHHhccCCcccccccccc
Q 043582 387 HLQVICCDAPRDCFFL-PCGHCAGCFTCGTRIAEEGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~rd~v~l-PCGH~~~C~~C~~~l~~~~~~CPICR~~I~ 432 (440)
..|+||++-.++.++. +|||. +|+.|..++.+..++||++++++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5799999999999999 99997 899999999877778999999874
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.56 E-value=0.0011 Score=50.72 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=36.4
Q ss_pred CccccccccccCcceEEecCCCc----cccHhhHHHHhcc--CCcccccccccc
Q 043582 385 PRHLQVICCDAPRDCFFLPCGHC----AGCFTCGTRIAEE--GGTCPICRKKIK 432 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPCGH~----~~C~~C~~~l~~~--~~~CPICR~~I~ 432 (440)
+...|.||++...+..+.||.+. .+=..|..++... +..||+||..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34579999987666677997642 3668899998763 578999998764
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.86 E-value=0.0076 Score=48.09 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=36.2
Q ss_pred cccccccccCcceE-EecCCCccccHhhHHHHhccC--Cccccccccccc
Q 043582 387 HLQVICCDAPRDCF-FLPCGHCAGCFTCGTRIAEEG--GTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~rd~v-~lPCGH~~~C~~C~~~l~~~~--~~CPICR~~I~~ 433 (440)
..|.||++...... ...|+|. |=..|..++.+.. .+||+||+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 46999998665433 2389997 7899999998866 799999998653
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.69 E-value=0.0026 Score=64.64 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=34.8
Q ss_pred ccccccccccCcc-e-----E--EecCCCccccHhhHHHHhccC-----------Cccccccccccc
Q 043582 386 RHLQVICCDAPRD-C-----F--FLPCGHCAGCFTCGTRIAEEG-----------GTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd-~-----v--~lPCGH~~~C~~C~~~l~~~~-----------~~CPICR~~I~~ 433 (440)
...|.||++..-+ . . -.+|||. |-..|..++.+.. +.||.||++|..
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4569999975544 1 1 2479997 7899998887531 579999999864
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.59 E-value=0.084 Score=44.26 Aligned_cols=48 Identities=19% Similarity=0.501 Sum_probs=38.6
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccceeE
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVRK 436 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vir 436 (440)
..|..|+-+.+. ++.|.-..+|..|...|.+....||||..++...++
T Consensus 29 ~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 29 QFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 469999988885 334663359999999999988999999998866543
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=83.31 E-value=0.94 Score=43.21 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=35.7
Q ss_pred ccccccccccCcceEEec-CCCccccHhhHHHHhccC--Cccccccccccc
Q 043582 386 RHLQVICCDAPRDCFFLP-CGHCAGCFTCGTRIAEEG--GTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~v~lP-CGH~~~C~~C~~~l~~~~--~~CPICR~~I~~ 433 (440)
...|.||.+-......-| |+|. +-..|..++.+.. ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467999998665554443 8987 7799999987654 499999987643
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=81.74 E-value=0.5 Score=38.28 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=23.8
Q ss_pred ccccccccc-CcceEE--ecCCCccccHhhHHHH
Q 043582 387 HLQVICCDA-PRDCFF--LPCGHCAGCFTCGTRI 417 (440)
Q Consensus 387 ~~C~ICld~-~rd~v~--lPCGH~~~C~~C~~~l 417 (440)
..|.||.+. .++++. ++|+|. +|..|....
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 469999964 455554 999997 999999873
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.36 E-value=1.5 Score=35.89 Aligned_cols=34 Identities=26% Similarity=0.569 Sum_probs=27.2
Q ss_pred CccccccccccCcceEEecC----CCccccHhhHHHHhc
Q 043582 385 PRHLQVICCDAPRDCFFLPC----GHCAGCFTCGTRIAE 419 (440)
Q Consensus 385 ~~~~C~ICld~~rd~v~lPC----GH~~~C~~C~~~l~~ 419 (440)
....|.+|.++-.+.-|.-| +|. ||+.|.+...+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCe-eeccccHHHHH
Confidence 34679999999999888777 465 99999877654
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.11 E-value=5.6 Score=32.98 Aligned_cols=48 Identities=25% Similarity=0.636 Sum_probs=33.2
Q ss_pred ccccccccccCcce----EEecCCCc--cccHhhHHHHhc-cCCccccccccccc
Q 043582 386 RHLQVICCDAPRDC----FFLPCGHC--AGCFTCGTRIAE-EGGTCPICRKKIKK 433 (440)
Q Consensus 386 ~~~C~ICld~~rd~----v~lPCGH~--~~C~~C~~~l~~-~~~~CPICR~~I~~ 433 (440)
.+.|.||-|..-.. +|.-|... ..|..|..--.+ .+..||-|+.+.++
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 46899998863221 55555433 269999987665 35789999998764
No 77
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=59.15 E-value=13 Score=26.70 Aligned_cols=27 Identities=4% Similarity=-0.147 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 290 RWITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 290 r~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
...+++.|+++++++++.++-++++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 355667778887777777777777654
No 78
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.04 E-value=23 Score=25.55 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 291 WITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 291 ~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
...++-|++.++++++.++-++++++
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34555567777777777676777654
No 79
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=50.61 E-value=4.1 Score=40.36 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=36.3
Q ss_pred CCccccccccccCcceEEec----CCC-ccccHhhHHHHhccCCcccccccc
Q 043582 384 NPRHLQVICCDAPRDCFFLP----CGH-CAGCFTCGTRIAEEGGTCPICRKK 430 (440)
Q Consensus 384 ~~~~~C~ICld~~rd~v~lP----CGH-~~~C~~C~~~l~~~~~~CPICR~~ 430 (440)
.....|++|-..+.-.++.. =|+ ...|.-|...|.-...+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 34578999999998776652 343 247999999887777899999986
No 80
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.47 E-value=24 Score=26.45 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043582 292 ITYFAGLGAMTILMFLAFR 310 (440)
Q Consensus 292 lt~I~Gl~~l~vL~~~l~R 310 (440)
++++.|+..+++++++++|
T Consensus 17 ~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566654
No 81
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.88 E-value=4.2 Score=36.40 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=30.5
Q ss_pred Ccccccccccc-----CcceEEecCCCccccHhhHHHHhcc-CCcccccccc
Q 043582 385 PRHLQVICCDA-----PRDCFFLPCGHCAGCFTCGTRIAEE-GGTCPICRKK 430 (440)
Q Consensus 385 ~~~~C~ICld~-----~rd~v~lPCGH~~~C~~C~~~l~~~-~~~CPICR~~ 430 (440)
++..|.+|... .+......|.|. +|..|....... .-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 35689999976 244466788887 799998443222 2378888764
No 82
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=40.30 E-value=23 Score=40.27 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=44.7
Q ss_pred CCCCccccccccccCcceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 382 NSNPRHLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 382 ~~~~~~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
+-++...|+|-++-.+|.|++|.||..+=+.+..++.....+||+-|+++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3456789999999999999999997657888998888777899999998864
No 83
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=40.01 E-value=25 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 291 WITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 291 ~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
.++.|.|++.+.+++-..+-+|+-++
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEcccc
Confidence 57889999998888888888887654
No 84
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=37.85 E-value=40 Score=25.29 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043582 291 WITYFAGLGAMTILMFLAFR 310 (440)
Q Consensus 291 ~lt~I~Gl~~l~vL~~~l~R 310 (440)
.++++.|+..+++++++++|
T Consensus 13 i~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665
No 85
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=37.11 E-value=50 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 043582 289 PRWITYFAGLGAMTILMFLAFRYCNM 314 (440)
Q Consensus 289 ~r~lt~I~Gl~~l~vL~~~l~R~~~k 314 (440)
|-+++-++++.....+.|.+++++++
T Consensus 6 weviaglvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555555666778888765
No 86
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=36.98 E-value=4.2 Score=31.33 Aligned_cols=42 Identities=33% Similarity=0.718 Sum_probs=23.3
Q ss_pred CCccccccccccC-cceEEecCCCcc------ccHhhHHHHhcc-CC---ccccccc
Q 043582 384 NPRHLQVICCDAP-RDCFFLPCGHCA------GCFTCGTRIAEE-GG---TCPICRK 429 (440)
Q Consensus 384 ~~~~~C~ICld~~-rd~v~lPCGH~~------~C~~C~~~l~~~-~~---~CPICR~ 429 (440)
.+..+|.||+... .| -|||.| +|..|...+.-. ++ .|-.||+
T Consensus 7 ~d~~~C~iC~KTKFAD----G~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD----GCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCS----SCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceecc----CCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4556899998543 33 478863 355554443321 11 4666665
No 87
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=36.03 E-value=46 Score=23.96 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 289 PRWITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 289 ~r~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
+-.++.++|+..++++++.++-|+++++
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 3466777776666666666665666554
No 88
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=30.43 E-value=1.9e+02 Score=22.51 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=12.1
Q ss_pred eecCCeeEEEEEEecC
Q 043582 146 LNKGSKLEISYNVKSP 161 (440)
Q Consensus 146 LNkGS~i~isy~v~~~ 161 (440)
...|..+.|.+++.+.
T Consensus 12 ~~~G~~vtL~C~~~~~ 27 (116)
T 1a2y_B 12 VAPSQSLSITCTVSGF 27 (116)
T ss_dssp ECTTSCEEEEEEEESS
T ss_pred EeCCCcEEEEEEEcCC
Confidence 3568888888888754
No 89
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.35 E-value=7.8 Score=32.60 Aligned_cols=43 Identities=21% Similarity=0.457 Sum_probs=29.2
Q ss_pred cccccccccCcceEEecCCCccccHhhHHHHhccCCcccccccccccee
Q 043582 387 HLQVICCDAPRDCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKKVR 435 (440)
Q Consensus 387 ~~C~ICld~~rd~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~vi 435 (440)
..|+.|..+... . |....|..|....... ..||-|.++++...
T Consensus 33 ~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~~-a~CPdC~q~LevLk 75 (101)
T 2jne_A 33 LHCPQCQHVLDQ----D-NGHARCRSCGEFIEMK-ALCPDCHQPLQVLK 75 (101)
T ss_dssp CBCSSSCSBEEE----E-TTEEEETTTCCEEEEE-EECTTTCSBCEEEE
T ss_pred ccCccCCCccee----c-CCEEECccccchhhcc-ccCcchhhHHHHHH
Confidence 579999765322 1 3334688888776433 68999999887643
No 90
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=30.18 E-value=27 Score=35.54 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=30.9
Q ss_pred cccccccccCcce-EEecCCCccccHhhHHHHhc----cCCcccccccccc
Q 043582 387 HLQVICCDAPRDC-FFLPCGHCAGCFTCGTRIAE----EGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~rd~-v~lPCGH~~~C~~C~~~l~~----~~~~CPICR~~I~ 432 (440)
..|++-+...+.. ....|.|. -|++-..-+.. ..-.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4699888776665 45689997 57766443332 2458999998763
No 91
>2bem_A CBP21; chitin-binding protein, chitin degradation, chitin-binding, FNIII-like fold; 1.55A {Serratia marcescens} SCOP: b.1.18.2 PDB: 2lhs_A 2ben_A
Probab=29.53 E-value=2.4e+02 Score=25.30 Aligned_cols=51 Identities=16% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCCCccc--ceeeeeEEEecCCCcceeEEEeecCCeeEEEEEEecCCC-CCeEEEEEeccccccccccCCCCCCcceeee
Q 043582 118 PPLDVEF--TWTETHIAVVPDDGHKEWLYFLNKGSKLEISYNVKSPSS-APLSLVIARGGESLEDWIDHPSCPKTTLSWN 194 (440)
Q Consensus 118 p~l~~~~--~w~~~~~~~v~~~s~k~w~y~LNkGS~i~isy~v~~~~~-~~l~lvi~~G~~~~~~w~~~p~~p~~tlsw~ 194 (440)
..||... .|..+..- .| ++++.|..-.++. +-..+.|.| ..| || +..|.|.
T Consensus 57 ~~ld~~~~~~W~~t~v~---------------~G-~~~f~w~~TA~H~t~~~~~YITK-----~gw--dp---~~pLtw~ 110 (170)
T 2bem_A 57 FELDQQTPTRWNKLNLK---------------TG-PNSFTWKLTARHSTTSWRYFITK-----PNW--DA---SQPLTRA 110 (170)
T ss_dssp GGGGCCCSSSSCCEEEE---------------SE-EEEEEEEESSCCCEEEEEEEEEC-----TTC--CT---TSCCCGG
T ss_pred ccCCCccCCCCccceec---------------Cc-cEEEEEEeecccCCceEEEEECC-----CCC--CC---CCCccHH
Confidence 3466553 48877532 36 7899999999876 468888887 225 44 5556665
No 92
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=27.79 E-value=32 Score=34.84 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=31.5
Q ss_pred cccccccccCcce-EEecCCCccccHhhHHHHhc----cCCcccccccccc
Q 043582 387 HLQVICCDAPRDC-FFLPCGHCAGCFTCGTRIAE----EGGTCPICRKKIK 432 (440)
Q Consensus 387 ~~C~ICld~~rd~-v~lPCGH~~~C~~C~~~l~~----~~~~CPICR~~I~ 432 (440)
..|++-+...+.. ....|.|. -|++-..-+.. ..-.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4699887766665 45689998 57776544432 2358999999874
No 93
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.87 E-value=47 Score=25.17 Aligned_cols=40 Identities=20% Similarity=0.451 Sum_probs=29.8
Q ss_pred ccccccccCcceEE---ecCCCccccHhhHHHHhccCCcccccc
Q 043582 388 LQVICCDAPRDCFF---LPCGHCAGCFTCGTRIAEEGGTCPICR 428 (440)
Q Consensus 388 ~C~ICld~~rd~v~---lPCGH~~~C~~C~~~l~~~~~~CPICR 428 (440)
.|--|.....+... -.|++. ||.+|..-+-..-..||.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCCC
Confidence 58888876644332 357775 89999988877778999983
No 94
>2kaf_A Non-structural protein 3; SARS-unique domain-C, automation in structure determination, viral protein; NMR {Sars coronavirus}
Probab=25.66 E-value=17 Score=27.80 Aligned_cols=21 Identities=38% Similarity=0.953 Sum_probs=16.1
Q ss_pred CCCcceeEE----------EeecCCeeEEEEEE
Q 043582 136 DDGHKEWLY----------FLNKGSKLEISYNV 158 (440)
Q Consensus 136 ~~s~k~w~y----------~LNkGS~i~isy~v 158 (440)
++|+|.|+| ||.+|.+ |-|.-
T Consensus 13 aGsy~dWsysgqrtelgveflkRGdk--ivyht 43 (67)
T 2kaf_A 13 AGSYRDWSYSGQRTELGVEFLKRGDK--IVYHT 43 (67)
T ss_dssp HTEETTEECCCCEETTEEEEEEETTE--EEEEC
T ss_pred cccccCceeecccchhhhhhhhcCCe--eeeee
Confidence 478899988 7999999 45543
No 95
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.61 E-value=7.6 Score=33.97 Aligned_cols=44 Identities=18% Similarity=0.455 Sum_probs=29.8
Q ss_pred ccccccccccCc-----ceEEecCCCccccHhhHHHHhcc----CCcccccccc
Q 043582 386 RHLQVICCDAPR-----DCFFLPCGHCAGCFTCGTRIAEE----GGTCPICRKK 430 (440)
Q Consensus 386 ~~~C~ICld~~r-----d~v~lPCGH~~~C~~C~~~l~~~----~~~CPICR~~ 430 (440)
...|.+|..... .....-|.|. +|..|....... .-.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcc-cccccCCccCCCCCccceechhhHHH
Confidence 467999987652 2355678886 789998765321 2368888864
No 96
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=25.53 E-value=2.5e+02 Score=24.48 Aligned_cols=32 Identities=16% Similarity=-0.080 Sum_probs=22.5
Q ss_pred ccceeecccCCCceEEEeccCCCcEEEEcCCC
Q 043582 240 SKAYYRCSLGSGLCSLSLDPLGTTSAILTSPG 271 (440)
Q Consensus 240 ~~a~~~cs~~~~~c~~~~~~~~~~~~vltsp~ 271 (440)
-.+.|.|...++.-...+.|..|-.+.+++|.
T Consensus 224 DsG~Y~C~~~~~~~~~~~~~g~gt~l~V~~~~ 255 (256)
T 3ux9_B 224 DTAVYYCARYIDFGDHMDFWGQGTLVTVSSLE 255 (256)
T ss_dssp GCEEEEEEEEETTTTEEEEECCCEEEEECCC-
T ss_pred hCEEEEEEEEcCCCcceEEECCCeEEEEecCC
Confidence 34889998777643456678888888888764
No 97
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=24.60 E-value=2e+02 Score=22.53 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.0
Q ss_pred eecCCeeEEEEEEecC
Q 043582 146 LNKGSKLEISYNVKSP 161 (440)
Q Consensus 146 LNkGS~i~isy~v~~~ 161 (440)
...|..+.|.+++...
T Consensus 12 v~~G~~v~L~C~~~~~ 27 (113)
T 1sq2_N 12 KETGESLTINCVLRDA 27 (113)
T ss_dssp ECTTCCEEEEEEECSC
T ss_pred EecCCCEEEEEEECCC
Confidence 4679999999999764
No 98
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=24.03 E-value=2.8e+02 Score=22.32 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=11.9
Q ss_pred eecCCeeEEEEEEecC
Q 043582 146 LNKGSKLEISYNVKSP 161 (440)
Q Consensus 146 LNkGS~i~isy~v~~~ 161 (440)
...|.+|.|.+++.+.
T Consensus 14 v~~G~~vtL~C~~s~~ 29 (123)
T 3k1k_C 14 VQPGGSLRLSCAASGF 29 (123)
T ss_dssp ECTTCCEEEEEEEESS
T ss_pred ECCCCCEEEEEEeeCC
Confidence 4468888888888763
No 99
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=23.95 E-value=1.2e+02 Score=25.29 Aligned_cols=26 Identities=8% Similarity=0.301 Sum_probs=19.9
Q ss_pred eEEEEEecc------CceEEEEeecCccceeE
Q 043582 201 KIQQKISKS------SDYYIAVGNLNSQQVEM 226 (440)
Q Consensus 201 ~~~~~i~~~------~~Yyiav~Nln~~~v~v 226 (440)
.++|+=+++ -+|||||.|-..+.+++
T Consensus 57 rLdY~g~e~~~~~~~~~y~VgVyDp~t~~lel 88 (102)
T 3nfg_A 57 RLEYDGETDELTTKTNQYMVGLYDKQSGKINL 88 (102)
T ss_dssp SEEEEEECCHHHHHHEEEEEEEEETTTTEEEE
T ss_pred ceEEEecccccCcccccEEEEEEcCCCCeEEE
Confidence 455555443 58999999999999987
No 100
>1jmu_B Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1 PDB: 2cse_A
Probab=22.69 E-value=1.2e+02 Score=32.79 Aligned_cols=49 Identities=14% Similarity=0.428 Sum_probs=39.7
Q ss_pred EecCCCcceeEEEeecCCee---------EEEEEEecC---------CCCCeEEEEEeccccccccc
Q 043582 133 VVPDDGHKEWLYFLNKGSKL---------EISYNVKSP---------SSAPLSLVIARGGESLEDWI 181 (440)
Q Consensus 133 ~v~~~s~k~w~y~LNkGS~i---------~isy~v~~~---------~~~~l~lvi~~G~~~~~~w~ 181 (440)
.++...-+.|+|||.+|+++ .+++++... ++..|.|++.|-+--|++|.
T Consensus 306 t~~~~~~~~~hf~~~ggt~vi~L~~~~s~~l~vdv~Gk~Y~~~~fdp~~k~~~llv~QSkiP~e~~t 372 (666)
T 1jmu_B 306 QVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWT 372 (666)
T ss_dssp EEEETTSCEEEEEEETTCEEEECTTSCSEEEEEECTTCCCCBTTBCCTTCEEEEEEEEESSCGGGCC
T ss_pred EecCCcccceeeeecCCcEEEEhhhcccceEEEEcCCcccccCCcCCCCceEEEEEEeccCChhhhc
Confidence 55677888999999999986 566777654 46688899999999999997
No 101
>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A
Probab=22.41 E-value=3e+02 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred ccceeecccCCCceEEEeccCCCcEEEEcC
Q 043582 240 SKAYYRCSLGSGLCSLSLDPLGTTSAILTS 269 (440)
Q Consensus 240 ~~a~~~cs~~~~~c~~~~~~~~~~~~vlts 269 (440)
-.|.|.|...+......+.|..|.-+.+.+
T Consensus 89 Dsg~Y~C~~~~~~~~~~~~fG~GT~l~v~~ 118 (124)
T 1yc7_A 89 DTGMYYCQIQCGVRSIREYWGQGTQVTVSS 118 (124)
T ss_dssp GCEEEEEEEEECSSSCEEEECCCEEEEEC-
T ss_pred HCEEEEEEEEeCCCcccceECCCEEEEEec
Confidence 347888876543112245566666666555
No 102
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.10 E-value=1.1e+02 Score=24.00 Aligned_cols=18 Identities=17% Similarity=-0.071 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043582 294 YFAGLGAMTILMFLAFRY 311 (440)
Q Consensus 294 ~I~Gl~~l~vL~~~l~R~ 311 (440)
+++|.++.++++..+.-+
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 455554444444444334
No 103
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=21.87 E-value=2.8e+02 Score=23.20 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=12.9
Q ss_pred eecCCeeEEEEEEecC
Q 043582 146 LNKGSKLEISYNVKSP 161 (440)
Q Consensus 146 LNkGS~i~isy~v~~~ 161 (440)
...|..|.|.+++...
T Consensus 12 v~~G~~vtL~C~~s~~ 27 (143)
T 3u6r_L 12 LSPGERATLSCRASQS 27 (143)
T ss_dssp ECTTCCEEEEEEESSC
T ss_pred EeCCCCEEEEEEECCC
Confidence 4569999999998764
No 104
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=21.20 E-value=2.4e+02 Score=26.67 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=45.2
Q ss_pred CCcceeeeEe----eCCceEEEEEec-cCceEEEEeecCc--cceeEEEEEEEeE-----EEEecccceeeccc---CCC
Q 043582 187 PKTTLSWNIL----YGSGKIQQKISK-SSDYYIAVGNLNS--QQVEMQLNFTMNV-----LVYNASKAYYRCSL---GSG 251 (440)
Q Consensus 187 p~~tlsw~~i----~g~g~~~~~i~~-~~~Yyiav~Nln~--~~v~v~l~~~i~~-----~~y~t~~a~~~cs~---~~~ 251 (440)
..-...|+.+ .|.+.|.|.|++ ++.||++|.=.|. ..-.+.++|.-.. .|--.-.++..... -++
T Consensus 129 Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g 208 (241)
T 1n10_A 129 GELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG 208 (241)
T ss_dssp CSEEEEEEECCCCCCTTCCCEEEECTTCBTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS
T ss_pred CEEEEEEEEEeCCCCCCCceEEEEcCCCCcceEEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC
Confidence 3445667766 344579999998 7899999864443 2233444444321 12222234444332 235
Q ss_pred ceEEEeccCCCcEEEE
Q 043582 252 LCSLSLDPLGTTSAIL 267 (440)
Q Consensus 252 ~c~~~~~~~~~~~~vl 267 (440)
.-+|.+.-..+..++.
T Consensus 209 pls~RvT~~~G~~v~~ 224 (241)
T 1n10_A 209 PFTVRYTTEGGTKTEA 224 (241)
T ss_dssp CEEEEEEESSSCEEEE
T ss_pred CEEEEEEEeCCcEEEE
Confidence 6677776666666554
No 105
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.06 E-value=55 Score=27.06 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=32.1
Q ss_pred cccccccccCc---ceEEecCCCccccHhhHHHHhccCCccccccccccc
Q 043582 387 HLQVICCDAPR---DCFFLPCGHCAGCFTCGTRIAEEGGTCPICRKKIKK 433 (440)
Q Consensus 387 ~~C~ICld~~r---d~v~lPCGH~~~C~~C~~~l~~~~~~CPICR~~I~~ 433 (440)
..|..|...-. ...+..=|.. +|..|..+....+.+|-.|.++|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~-yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMI-LCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEE-ECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCee-ecHHHHHHHcCCCCccccCCCCcCc
Confidence 35667755543 2244455554 7999999987655589999999975
No 106
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.94 E-value=33 Score=25.57 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=7.5
Q ss_pred Cccccccccc
Q 043582 422 GTCPICRKKI 431 (440)
Q Consensus 422 ~~CPICR~~I 431 (440)
-.||.|+.+.
T Consensus 48 W~C~~C~~~~ 57 (61)
T 1mm2_A 48 WLCPRCTCPA 57 (61)
T ss_dssp CCCTTTTTTC
T ss_pred cCChhhcCch
Confidence 3699998754
No 107
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.00 E-value=83 Score=22.25 Aligned_cols=27 Identities=4% Similarity=0.110 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 043582 290 RWITYFAGLGAMTILMFLAFRYCNMCR 316 (440)
Q Consensus 290 r~lt~I~Gl~~l~vL~~~l~R~~~k~r 316 (440)
.++.++.|.+.+++++++++|++-..+
T Consensus 12 Iv~gvi~~ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 12 VLLSVMGAILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 344555566667777778888776543
Done!