BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043585
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 167/344 (48%), Gaps = 71/344 (20%)
Query: 14 ELFEGHGQITGLFLNNLSPMSLKGAVELGRADIIHSHGKP--------------TKTSNP 59
E+F+ + + MSLK ++E+ +IIH+HGKP TK N
Sbjct: 12 EIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDNV 71
Query: 60 FRFM--------------------QEDYDLTPISTLLIKDKSYCLSPLVSGILDPDNIFL 99
R M +E Y LT S LL+K CL+P+V +LDP
Sbjct: 72 QRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLDPTLSTS 131
Query: 100 LHFISKLFKGNDVSVWETVRGMKHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTL 159
H + K D++++ G WE +++NP + +N A+ +DS+M +KDC +
Sbjct: 132 FHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDC-NLV 190
Query: 160 IERLGSMVDVGGGN-----------------VLDLPHAVANTPQTENLKYVADDMFQFIP 202
E L S+VDVGGGN V D P V N + NL YV DMF +P
Sbjct: 191 FEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVP 250
Query: 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQ------ 256
ADA H + +D +KILKKC+EA+ +G+RGKV+++D+VINEK+DE+Q
Sbjct: 251 KADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKL 310
Query: 257 -------------RTDKEWKTLFLDAGFTCCKITTMFGLKSLIK 287
R ++EWK LF++AGF KI+ GL SLI+
Sbjct: 311 LMNVTISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIE 354
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 162/344 (47%), Gaps = 66/344 (19%)
Query: 9 GVSVKELFEGHGQITGLFLNNLSPMSLKGAVELGRADIIHSHGKPTKTSNPFRFMQ---- 64
G E+F+ + + MSLK AVE+ +II +HGKP SN +Q
Sbjct: 7 GRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSS 66
Query: 65 -------------------------EDYDLTPISTLLIKDKSYCLSPLVSGILDPDNIFL 99
E Y LT S LL++ CL+P+V +LDP
Sbjct: 67 KIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGS 126
Query: 100 LHFISKLFKGNDVSVWETVRGMKHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTL 159
H + K D++++ G W+ + +NP + FN AM +DS++ ++DC +
Sbjct: 127 YHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDC-DFV 185
Query: 160 IERLGSMVDVGGGN-----------------VLDLPHAVANTPQTENLKYVADDMFQFIP 202
+ L S+VDVGGG V D P V N + NL YV DMF IP
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 245
Query: 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQ------ 256
ADA H + +D L+ILKKC+EA+ +G+RGKV I+D+VI++K+DE+Q
Sbjct: 246 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKL 305
Query: 257 -------------RTDKEWKTLFLDAGFTCCKITTMFGLKSLIK 287
R ++EWK LF++AGF KI+ + G SLI+
Sbjct: 306 LMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIE 349
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 156/344 (45%), Gaps = 66/344 (19%)
Query: 9 GVSVKELFEGHGQITGLFLNNLSPMSLKGAVELGRADIIHSHGKPTKTSNPFRFMQ---- 64
G E+F+ + + SLK AVE +II +HGKP SN +Q
Sbjct: 7 GRKPSEIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSS 66
Query: 65 -------------------------EDYDLTPISTLLIKDKSYCLSPLVSGILDPDNIFL 99
E Y LT S LL++ CL+P V +LDP
Sbjct: 67 KIGNVRRLXRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGS 126
Query: 100 LHFISKLFKGNDVSVWETVRGMKHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTL 159
H + K D++++ G W+ + +NP + FN A +DS++ ++DC +
Sbjct: 127 YHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDC-DFV 185
Query: 160 IERLGSMVDVGGGN-----------------VLDLPHAVANTPQTENLKYVADDMFQFIP 202
+ L S+VDVGGG V D P V N + NL YV D F IP
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIP 245
Query: 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQ------ 256
ADA H + +D L+ILKKC+EA+ +G+RGKV I+D VI++K+DE+Q
Sbjct: 246 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKL 305
Query: 257 -------------RTDKEWKTLFLDAGFTCCKITTMFGLKSLIK 287
R ++EWK LF++AGF KI+ + G SLI+
Sbjct: 306 LXDVNXACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIE 349
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 163/356 (45%), Gaps = 78/356 (21%)
Query: 9 GVSVKELFEGHGQITGLFLNNLSPMSLKGAVELGRADIIHSHGKP--------------T 54
G EL+ + N +S M+LK A+ELG AD IH+HGKP +
Sbjct: 1 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS 60
Query: 55 KTSNPFRFMQE-----------------------DYDLTPISTLLIKDKSYCLSPLVSGI 91
K + RF++ Y LTP S LLI K CLS +V G
Sbjct: 61 KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGA 120
Query: 92 LDPDNIFLLHFISKLF-KGNDVSVWETVRGMKHWEIMSQNPRLS--QRFNQAMVNDSEMA 148
L P ++ + K F + + +++E G W+ ++++ S F AM +DS M
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 149 TFIVKDCCRTLIERLGSMVDVGGG-----------------NVLDLPHAVANTPQTENLK 191
++++ R + E L S+VDVGGG V D P V N ENL
Sbjct: 181 KLVLQENKR-VFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN 239
Query: 192 YVADDMFQFIPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK 251
+V DMF+ IP ADA H + E SLKILK +EAI+ G+ GKV+I+DI I+E
Sbjct: 240 FVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDET 299
Query: 252 EDE--------------------DQRTDKEWKTLFLDAGFTCCKITTMFGLKSLIK 287
D+ +RT +EW+ L DAGF+ KIT + G KSLI+
Sbjct: 300 SDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIE 355
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 162/351 (46%), Gaps = 78/351 (22%)
Query: 14 ELFEGHGQITGLFLNNLSPMSLKGAVELGRADIIHSHGKP--------------TKTSNP 59
EL+ + N +S M+LK A+ELG AD IH+HGKP +K +
Sbjct: 5 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 64
Query: 60 FRFMQE-----------------------DYDLTPISTLLIKDKSYCLSPLVSGILDPDN 96
RF++ Y LTP S LLI K CLS +V G L P +
Sbjct: 65 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 124
Query: 97 IFLLHFISKLF-KGNDVSVWETVRGMKHWEIMSQNPRLS--QRFNQAMVNDSEMATFIVK 153
+ + K F + + +++E G W+ ++++ S F AM +DS M +++
Sbjct: 125 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQ 184
Query: 154 DCCRTLIERLGSMVDVGGG-----------------NVLDLPHAVANTPQTENLKYVADD 196
+ R + E L S+VDVGGG V D P V N ENL +V D
Sbjct: 185 ENKR-VFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 243
Query: 197 MFQFIPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-- 254
MF+ IP ADA H + E SLKILK +EAI+ G+ GKV+I+DI I+E D+
Sbjct: 244 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 303
Query: 255 ------------------DQRTDKEWKTLFLDAGFTCCKITTMFGLKSLIK 287
+RT +EW+ L DAGF+ KIT + G KSLI+
Sbjct: 304 LTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIE 354
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 162/351 (46%), Gaps = 78/351 (22%)
Query: 14 ELFEGHGQITGLFLNNLSPMSLKGAVELGRADIIHSHGKP--------------TKTSNP 59
EL+ + N +S M+LK A+ELG AD IH+HGKP +K +
Sbjct: 2 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 61
Query: 60 FRFMQE-----------------------DYDLTPISTLLIKDKSYCLSPLVSGILDPDN 96
RF++ Y LTP S LLI K CLS +V G L P +
Sbjct: 62 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 121
Query: 97 IFLLHFISKLF-KGNDVSVWETVRGMKHWEIMSQNPRLS--QRFNQAMVNDSEMATFIVK 153
+ + K F + + +++E G W+ ++++ S F AM +DS M +++
Sbjct: 122 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQ 181
Query: 154 DCCRTLIERLGSMVDVGGG-----------------NVLDLPHAVANTPQTENLKYVADD 196
+ R + E L S+VDVGGG V D P V N ENL +V D
Sbjct: 182 ENKR-VFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 240
Query: 197 MFQFIPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-- 254
MF+ IP ADA H + E SLKILK +EAI+ G+ GKV+I+DI I+E D+
Sbjct: 241 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 300
Query: 255 ------------------DQRTDKEWKTLFLDAGFTCCKITTMFGLKSLIK 287
+RT +EW+ L DAGF+ KIT + G KSLI+
Sbjct: 301 LTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIE 351
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 108/255 (42%), Gaps = 48/255 (18%)
Query: 63 MQEDYDLTPISTLLIKDK-SYCLSPLVSGILDPDNIFL---LHFISKLFKGNDVSVWETV 118
+Q Y L ++ L+K++ +S L +++ D + + H + G +
Sbjct: 102 VQRLYGLATVAKYLVKNEDGVSISAL--NLMNQDKVLMESWYHLKDAVLDGG--IPFNKA 157
Query: 119 RGMKHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTL--IERLGSMVDVGGGNV-- 174
GM +E +PR ++ FN+ M S+ +T +K T E L S+VDVGGG
Sbjct: 158 YGMTAFEYHGTDPRFNKVFNKGM---SDHSTITMKKILETYTGFEGLKSLVDVGGGTGAV 214
Query: 175 ---------------LDLPHAVANTPQTENLKYVADDMFQFIPPADAYFFMLFFHAFGGE 219
DLPH + + P +++V DMF IP ADA F H + E
Sbjct: 215 INTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDE 274
Query: 220 DSLKILKKCREAIAGNGQ------------------RGKVLIMDIVINEKEDEDQRTDKE 261
LK LK C EA+ NG+ +G V I I++ +RT KE
Sbjct: 275 HCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKE 334
Query: 262 WKTLFLDAGFTCCKI 276
++ L AGF K+
Sbjct: 335 FEDLAKGAGFQGFKV 349
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 49/220 (22%)
Query: 111 DVSVWETVRGMKHWEIMSQNPRLSQRFNQAMVN--DSEMATFIVKDCCRTLIERLGSMVD 168
D+ +++ V G+ +E M ++ +++Q FN++MV+ +EM + T E + ++VD
Sbjct: 159 DIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE---IYTGFEGISTLVD 215
Query: 169 VGGGN-----------------VLDLPHAVANTPQTENLKYVADDMFQFIPPADAYFFML 211
VGGG+ DLP + N P +++V DMF +P DA
Sbjct: 216 VGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKA 275
Query: 212 FFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDED---------------- 255
H + E ++ L C +A++ N GKV+I++ ++ E+ +
Sbjct: 276 VCHNWSDEKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT 332
Query: 256 ----QRTDKEWKTLFLDAGFT----CCKITTMFGLKSLIK 287
+RT+K+++ L +GF+ C+ G+ K
Sbjct: 333 VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 36/197 (18%)
Query: 120 GMKHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTLIERLGSMVDVGGGNV----- 174
GM +E +PR ++ FN+ M N S + T + + E LG++VDVGGG
Sbjct: 160 GMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGF-EGLGTLVDVGGGVGATVAA 218
Query: 175 ------------LDLPHAVANTPQTENLKYVADDMFQFIPPADAYFFMLFFHAFGGEDSL 222
DLPH ++ PQ + +V DMF+ +P D H + +
Sbjct: 219 IAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCA 278
Query: 223 KILKKCREAIAGNGQ------------------RGKVLIMDIVINEKEDEDQRTDKEWKT 264
+LK C +A+ +G+ +G + I++ +R ++E++
Sbjct: 279 TLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQA 338
Query: 265 LFLDAGFTCCKITTMFG 281
L AGFT K T ++
Sbjct: 339 LARGAGFTGVKSTYIYA 355
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 54/256 (21%)
Query: 67 YDLTPISTLLIKDK-SYCLSPLVSGILDPDNIFL---LHFISKLFKGNDVSVWETVRGMK 122
Y L P+ L K++ L+P + +L D + L + + +G + GM
Sbjct: 109 YGLAPVCKFLTKNEDGVSLAPFL--LLATDKVLLEPWFYLKDAILEGG--IPFNKAYGMN 164
Query: 123 HWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTL--IERLGSMVDVGGGNV------ 174
++ + R+++ FN+ M ++S T +K E L ++VDVGGG
Sbjct: 165 IFDYHGTDHRINKVFNKGMSSNS---TITMKKILEMYNGFEGLTTIVDVGGGTGAVASMI 221
Query: 175 -----------LDLPHAVANTPQTENLKYVADDMFQFIPPADAYFFMLFFHAFGGEDSLK 223
DLPH + + P ++++ DMF +P DA F H + E LK
Sbjct: 222 VAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLK 281
Query: 224 ILKKCREAIAGNGQRGKVLIMDIVINEKEDED---------------------QRTDKEW 262
+LK C A+ GKV++ + ++ D +RT+KE+
Sbjct: 282 LLKNCYAALP---DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF 338
Query: 263 KTLFLDAGFTCCKITT 278
+ L + +GF K+ +
Sbjct: 339 QALAMASGFRGFKVAS 354
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 110/273 (40%), Gaps = 66/273 (24%)
Query: 67 YDLTPISTLLIKDKSY-CLSPLVSGILDPDNIFLLHFISKLFKGNDVSVWETVRGMKHWE 125
Y L+ + L+ D+S L+ + + P + + + D+ +++ V G+ +E
Sbjct: 114 YGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYE 173
Query: 126 IMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTLIER----------LGSMVDVGGGN-- 173
++ + +Q FN++ V D C T +R + ++VDVGGG+
Sbjct: 174 FXGKDKKXNQIFNKSXV-----------DVCATEXKRXLEIYTGFEGISTLVDVGGGSGR 222
Query: 174 ---------------VLDLPHAVANTPQTENLKYVADDMFQFIPPADAYFFMLFFHAFGG 218
DLP + N P +++V D F +P DA H +
Sbjct: 223 NLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSD 282
Query: 219 EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDED--------------------QRT 258
E ++ L C +A++ N GKV+I++ ++ E+ + +RT
Sbjct: 283 EKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVSTLDNLXFITVGGRERT 339
Query: 259 DKEWKTLFLDAGFT----CCKITTMFGLKSLIK 287
+K+++ L +GF+ C+ G+ K
Sbjct: 340 EKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 41/160 (25%)
Query: 164 GSMVDVGGGN-----------------VLDLPHAVA----NTPQTE-NLKYVADDMFQFI 201
G++ DVGGG +LD VA + P K V D + +
Sbjct: 186 GTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREV 245
Query: 202 PPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQ----- 256
P AD + H +G EDS++IL CR + G+VL++D V+ E D Q
Sbjct: 246 PHADVHVLKRILHNWGDEDSVRILTNCRRVXPAH---GRVLVIDAVVPEGNDAHQSKEXD 302
Query: 257 -----------RTDKEWKTLFLDAGFTCCKITTMFGLKSL 285
RT E + LF AG ++ + S+
Sbjct: 303 FXXLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVXSI 342
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 115 WETVRGMKHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTLIERLGSMVDVGGGNV 174
+E G + + + P +RF AM + + + R L R S VDVGGG+
Sbjct: 124 FELAFGEDFYSYLKRCPDAGRRFLLAM----KASNLAFHEIPRLLDFRGRSFVDVGGGSG 179
Query: 175 LDLPHAVANTPQT-------------------------ENLKYVADDMFQFIPP-ADAYF 208
+L A+ + E + V DM Q +P D Y
Sbjct: 180 -ELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYL 238
Query: 209 FMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE 252
SL++L CREA+AG+ G+V++++ I+ E
Sbjct: 239 LSRIIGDLDEAASLRLLGNCREAMAGD---GRVVVIERTISASE 279
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 116 ETVRGMKHWEIMSQNPRLSQR----FNQAMVNDSEMATFIVKDCCRTLIERLGSMVDVGG 171
+ VRG K+++ P +++ F + ++++ A ++ + + ++ + M+DVGG
Sbjct: 142 QAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGG 199
Query: 172 G-----------------NVLDLPHAVANTPQTENLKYVADDMF--------QFIPPADA 206
G +L+LP A+ + K VAD M + P ADA
Sbjct: 200 GIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 259
Query: 207 YFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED 253
F ++ + S + KK +A+ G ++LI+D+VI++ E+
Sbjct: 260 VLFCRILYSANEQLSTIMCKKAFDAMRSGG---RLLILDMVIDDPEN 303
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 30/157 (19%)
Query: 120 GMKHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTLIERLGSMVDVGG-------- 171
G W++ ++P+ + FN+A + S V + VD+GG
Sbjct: 162 GTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLXAA 219
Query: 172 ---------GNVLDLPHAVANTPQTENLKYVAD-------DMFQFIPP-ADAYFFMLFFH 214
G +L+ P + + +AD D F+ IP AD Y H
Sbjct: 220 VLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLH 279
Query: 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK 251
+ +D ++IL++ A + ++L++D +I+E+
Sbjct: 280 DWDDDDVVRILRRIATAXKPD---SRLLVIDNLIDER 313
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 187 TENLKYVADDMFQFIP-PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMD 245
++ + V D F+ +P ADA + D+++IL +C EA+ G+
Sbjct: 232 SDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR-------- 283
Query: 246 IVINEKED 253
I+I+E++D
Sbjct: 284 ILIHERDD 291
>pdb|3FMG|A Chain A, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
pdb|3IYU|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|P Chain P, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Q Chain Q, Atomic Model Of An Infectious Rotavirus Particle
Length = 276
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 144 DSEMATFIVKDCCRTLIERLGSMVDVGGGNVLDLPHAVANTPQTENL 190
D AT +++C + +++ VGG +VLD+ PQTE +
Sbjct: 188 DVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERM 234
>pdb|3GZT|B Chain B, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|O Chain O, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|P Chain P, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|Q Chain Q, Vp7 Recoated Rotavirus Dlp
Length = 255
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 144 DSEMATFIVKDCCRTLIERLGSMVDVGGGNVLDLPHAVANTPQTENL 190
D AT +++C + +++ VGG +VLD+ PQTE +
Sbjct: 181 DVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERM 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,777,393
Number of Sequences: 62578
Number of extensions: 363324
Number of successful extensions: 730
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 25
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)