Query 043585
Match_columns 287
No_of_seqs 148 out of 1286
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 2.2E-41 4.8E-46 303.4 20.4 265 17-287 5-339 (342)
2 PF00891 Methyltransf_2: O-met 100.0 3.2E-39 6.9E-44 284.3 11.4 196 65-267 4-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 1.4E-31 3E-36 243.8 18.2 232 31-277 3-305 (306)
4 PTZ00098 phosphoethanolamine N 99.4 3.7E-12 8.1E-17 113.7 11.6 123 152-280 45-204 (263)
5 TIGR00740 methyltransferase, p 99.4 2.6E-12 5.6E-17 113.0 9.2 113 161-276 52-225 (239)
6 PF01209 Ubie_methyltran: ubiE 99.3 6.6E-13 1.4E-17 116.3 2.9 116 160-280 45-222 (233)
7 PRK15451 tRNA cmo(5)U34 methyl 99.3 7.4E-12 1.6E-16 110.7 9.0 113 161-276 55-228 (247)
8 COG2226 UbiE Methylase involve 99.3 1.3E-11 2.9E-16 107.7 10.0 113 162-279 51-225 (238)
9 PLN02233 ubiquinone biosynthes 99.3 3E-11 6.5E-16 107.7 10.7 117 160-281 71-251 (261)
10 KOG1540 Ubiquinone biosynthesi 99.2 4.9E-11 1.1E-15 103.3 10.2 112 159-275 97-278 (296)
11 TIGR02752 MenG_heptapren 2-hep 99.2 1.3E-10 2.7E-15 101.5 11.6 121 159-284 42-225 (231)
12 PLN02490 MPBQ/MSBQ methyltrans 99.2 8.4E-11 1.8E-15 108.1 9.5 115 162-281 113-259 (340)
13 PLN02244 tocopherol O-methyltr 99.2 1.7E-10 3.6E-15 106.8 11.3 115 161-280 117-280 (340)
14 PRK15068 tRNA mo(5)U34 methylt 99.2 1.9E-10 4.1E-15 105.6 10.4 113 162-279 122-275 (322)
15 PLN02336 phosphoethanolamine N 99.2 2.3E-10 5E-15 110.3 11.3 115 160-279 264-415 (475)
16 PF05891 Methyltransf_PK: AdoM 99.2 3.3E-11 7.2E-16 102.9 4.7 116 161-279 54-202 (218)
17 PRK11207 tellurite resistance 99.1 4.4E-10 9.5E-15 96.1 11.0 113 160-277 28-169 (197)
18 smart00828 PKS_MT Methyltransf 99.1 4E-10 8.6E-15 97.9 9.7 111 164-279 1-145 (224)
19 PRK11036 putative S-adenosyl-L 99.1 7.2E-10 1.6E-14 98.4 10.7 115 161-280 43-209 (255)
20 PRK11873 arsM arsenite S-adeno 99.1 6.9E-10 1.5E-14 99.4 10.6 115 159-278 74-230 (272)
21 PRK14103 trans-aconitate 2-met 99.1 1.2E-09 2.7E-14 96.9 11.6 114 152-274 22-180 (255)
22 PRK06922 hypothetical protein; 99.1 2.9E-10 6.2E-15 111.2 7.7 126 121-252 377-544 (677)
23 TIGR00452 methyltransferase, p 99.1 1.8E-09 3.9E-14 98.5 12.1 114 161-279 120-274 (314)
24 PRK00216 ubiE ubiquinone/menaq 99.0 2.1E-09 4.5E-14 93.6 11.3 122 160-286 49-234 (239)
25 PLN02396 hexaprenyldihydroxybe 99.0 1.1E-09 2.3E-14 100.4 9.4 113 162-279 131-290 (322)
26 TIGR02021 BchM-ChlM magnesium 99.0 4.6E-09 9.9E-14 91.0 10.8 152 123-279 16-207 (219)
27 TIGR00477 tehB tellurite resis 98.9 7.2E-09 1.6E-13 88.4 10.7 113 160-277 28-168 (195)
28 PLN02336 phosphoethanolamine N 98.9 3.5E-09 7.5E-14 102.2 9.5 112 160-274 35-178 (475)
29 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 6.7E-09 1.5E-13 89.5 9.9 117 160-281 37-213 (223)
30 PF12847 Methyltransf_18: Meth 98.9 2.3E-09 4.9E-14 82.5 5.9 80 163-245 2-111 (112)
31 PF13489 Methyltransf_23: Meth 98.9 1.5E-09 3.2E-14 88.7 4.6 107 160-275 20-160 (161)
32 PLN02232 ubiquinone biosynthes 98.9 5.2E-09 1.1E-13 86.5 7.2 101 175-280 3-149 (160)
33 PF13847 Methyltransf_31: Meth 98.9 1.2E-09 2.5E-14 89.3 2.5 104 162-270 3-152 (152)
34 PRK06202 hypothetical protein; 98.8 1.2E-08 2.7E-13 89.2 8.9 113 161-279 59-223 (232)
35 PRK08317 hypothetical protein; 98.8 2.8E-08 6.1E-13 86.3 10.4 115 159-278 16-176 (241)
36 PRK12335 tellurite resistance 98.8 2.8E-08 6.1E-13 89.8 10.0 112 161-277 119-258 (287)
37 PRK08287 cobalt-precorrin-6Y C 98.8 2.1E-08 4.5E-13 84.8 8.5 105 159-279 28-157 (187)
38 PRK07580 Mg-protoporphyrin IX 98.8 5.1E-08 1.1E-12 84.8 10.7 117 160-280 61-216 (230)
39 smart00138 MeTrc Methyltransfe 98.8 1E-07 2.2E-12 85.2 12.2 55 188-245 185-242 (264)
40 PRK01683 trans-aconitate 2-met 98.7 1.5E-07 3.2E-12 83.5 12.4 114 152-273 24-182 (258)
41 TIGR03438 probable methyltrans 98.7 1.2E-07 2.5E-12 86.4 11.4 80 161-243 62-175 (301)
42 PLN03075 nicotianamine synthas 98.7 2.9E-08 6.2E-13 89.4 6.2 108 161-281 122-263 (296)
43 PF02353 CMAS: Mycolic acid cy 98.7 4.5E-08 9.7E-13 87.8 7.3 122 152-279 55-218 (273)
44 TIGR03840 TMPT_Se_Te thiopurin 98.7 2.8E-07 6.1E-12 79.7 11.2 113 161-277 33-186 (213)
45 PRK10258 biotin biosynthesis p 98.6 1.9E-07 4.1E-12 82.6 10.1 108 161-273 41-182 (251)
46 PF08241 Methyltransf_11: Meth 98.6 2.9E-08 6.3E-13 73.4 3.6 72 167-243 1-95 (95)
47 TIGR02072 BioC biotin biosynth 98.6 1.1E-07 2.5E-12 82.6 7.3 110 162-277 34-175 (240)
48 PRK04266 fibrillarin; Provisio 98.6 5.3E-07 1.2E-11 78.7 11.3 109 159-280 69-212 (226)
49 COG2230 Cfa Cyclopropane fatty 98.6 2.4E-07 5.1E-12 82.7 8.8 123 152-280 65-225 (283)
50 PRK05785 hypothetical protein; 98.6 2.7E-07 5.8E-12 80.6 8.7 109 162-280 51-213 (226)
51 PF08003 Methyltransf_9: Prote 98.6 6E-07 1.3E-11 80.5 10.9 72 203-279 182-268 (315)
52 PLN02585 magnesium protoporphy 98.6 4.3E-07 9.4E-12 83.0 10.1 113 162-279 144-300 (315)
53 PF12147 Methyltransf_20: Puta 98.5 5E-07 1.1E-11 80.3 9.6 112 161-275 134-295 (311)
54 TIGR00537 hemK_rel_arch HemK-r 98.5 7.4E-07 1.6E-11 74.8 10.4 109 161-280 18-167 (179)
55 PRK11705 cyclopropane fatty ac 98.5 6.2E-07 1.4E-11 84.2 10.6 118 159-280 164-314 (383)
56 PF05401 NodS: Nodulation prot 98.5 1E-07 2.2E-12 80.4 4.2 114 161-279 42-180 (201)
57 PF08242 Methyltransf_12: Meth 98.5 6.1E-08 1.3E-12 73.1 2.5 70 167-241 1-99 (99)
58 PTZ00146 fibrillarin; Provisio 98.5 1.6E-06 3.4E-11 78.0 11.3 114 159-280 129-273 (293)
59 PRK05134 bifunctional 3-demeth 98.5 7.7E-07 1.7E-11 77.7 9.0 113 161-278 47-205 (233)
60 PRK13255 thiopurine S-methyltr 98.5 1.4E-06 3.1E-11 75.6 10.3 114 161-278 36-190 (218)
61 TIGR03587 Pse_Me-ase pseudamin 98.5 4.4E-07 9.6E-12 78.0 7.1 86 160-250 41-147 (204)
62 TIGR01983 UbiG ubiquinone bios 98.4 1.3E-06 2.8E-11 75.7 9.4 112 162-278 45-203 (224)
63 KOG1270 Methyltransferases [Co 98.4 2.4E-07 5.2E-12 81.0 4.3 111 163-278 90-249 (282)
64 TIGR02081 metW methionine bios 98.4 2E-06 4.4E-11 73.1 9.4 111 161-280 12-169 (194)
65 COG2227 UbiG 2-polyprenyl-3-me 98.4 2.8E-07 6.1E-12 79.8 3.9 113 162-279 59-216 (243)
66 PF13649 Methyltransf_25: Meth 98.4 1.8E-07 3.8E-12 71.0 1.8 71 166-239 1-101 (101)
67 PF03848 TehB: Tellurite resis 98.3 9.5E-07 2.1E-11 74.9 6.1 113 159-276 27-167 (192)
68 TIGR00138 gidB 16S rRNA methyl 98.3 1.8E-06 3.8E-11 72.9 7.7 101 163-281 43-172 (181)
69 COG4106 Tam Trans-aconitate me 98.3 3.3E-06 7.2E-11 72.0 8.7 125 152-287 23-200 (257)
70 PRK00517 prmA ribosomal protei 98.3 5.1E-06 1.1E-10 73.6 9.8 105 161-286 118-246 (250)
71 TIGR03534 RF_mod_PrmC protein- 98.2 5.6E-06 1.2E-10 72.8 8.8 106 162-279 87-242 (251)
72 PRK14968 putative methyltransf 98.2 1.8E-05 3.9E-10 66.3 10.6 108 161-279 22-174 (188)
73 PRK00107 gidB 16S rRNA methylt 98.2 1.3E-05 2.9E-10 67.9 9.7 101 161-279 44-170 (187)
74 PRK13256 thiopurine S-methyltr 98.2 2.1E-05 4.5E-10 68.5 10.6 113 161-277 42-196 (226)
75 PF05724 TPMT: Thiopurine S-me 98.1 1.1E-05 2.3E-10 70.1 7.4 115 160-278 35-190 (218)
76 PF05148 Methyltransf_8: Hypot 98.1 1.9E-05 4.1E-10 67.3 8.5 150 98-277 13-184 (219)
77 PRK15001 SAM-dependent 23S rib 98.0 1E-05 2.3E-10 75.6 6.9 80 163-245 229-340 (378)
78 PF06080 DUF938: Protein of un 98.0 3.6E-05 7.9E-10 65.6 9.1 81 203-286 102-201 (204)
79 TIGR00406 prmA ribosomal prote 98.0 1.5E-05 3.3E-10 72.1 7.3 103 162-281 159-286 (288)
80 PRK00121 trmB tRNA (guanine-N( 98.0 1.3E-05 2.8E-10 68.7 5.7 102 162-274 40-177 (202)
81 PRK00377 cbiT cobalt-precorrin 97.9 5.9E-05 1.3E-09 64.3 8.3 99 159-273 37-165 (198)
82 PRK14967 putative methyltransf 97.9 0.00012 2.7E-09 63.6 10.2 107 160-277 34-183 (223)
83 KOG4300 Predicted methyltransf 97.9 5.5E-05 1.2E-09 64.2 7.4 113 162-280 76-234 (252)
84 PF11968 DUF3321: Putative met 97.9 0.00013 2.8E-09 62.6 9.7 110 163-279 52-182 (219)
85 PRK09328 N5-glutamine S-adenos 97.8 9.1E-05 2E-09 66.1 9.1 105 161-277 107-261 (275)
86 KOG2361 Predicted methyltransf 97.8 3.5E-05 7.6E-10 66.8 6.1 111 163-276 72-235 (264)
87 PRK09489 rsmC 16S ribosomal RN 97.8 4.2E-05 9E-10 70.9 7.0 81 163-246 197-304 (342)
88 PHA03411 putative methyltransf 97.8 8.5E-05 1.8E-09 66.3 8.6 106 163-273 65-209 (279)
89 PF04672 Methyltransf_19: S-ad 97.8 1.7E-05 3.6E-10 70.3 4.1 108 162-274 68-232 (267)
90 KOG3045 Predicted RNA methylas 97.8 0.00026 5.6E-09 62.1 11.1 135 123-279 138-292 (325)
91 COG2264 PrmA Ribosomal protein 97.8 5.2E-05 1.1E-09 68.4 7.0 134 130-285 136-295 (300)
92 PF07021 MetW: Methionine bios 97.8 3.1E-05 6.8E-10 65.2 5.0 112 161-281 12-170 (193)
93 PF06325 PrmA: Ribosomal prote 97.8 2.4E-05 5.3E-10 70.8 4.2 127 137-286 140-291 (295)
94 TIGR02469 CbiT precorrin-6Y C5 97.8 6.2E-05 1.3E-09 58.3 5.9 78 159-244 16-121 (124)
95 PF05175 MTS: Methyltransferas 97.8 4.9E-05 1.1E-09 63.3 5.6 81 162-245 31-140 (170)
96 KOG2899 Predicted methyltransf 97.7 6.7E-05 1.5E-09 65.1 5.9 82 189-274 151-253 (288)
97 KOG1271 Methyltransferases [Ge 97.7 0.00011 2.4E-09 61.2 6.8 106 163-280 68-207 (227)
98 TIGR03533 L3_gln_methyl protei 97.7 0.0002 4.3E-09 64.7 9.1 105 162-279 121-275 (284)
99 cd02440 AdoMet_MTases S-adenos 97.7 8.6E-05 1.9E-09 54.4 5.4 76 165-244 1-103 (107)
100 COG2242 CobL Precorrin-6B meth 97.7 0.00021 4.5E-09 60.0 8.1 102 159-277 31-160 (187)
101 PRK03612 spermidine synthase; 97.7 0.00017 3.8E-09 70.5 9.0 105 161-272 296-438 (521)
102 PRK11188 rrmJ 23S rRNA methylt 97.7 0.00064 1.4E-08 58.6 11.5 104 160-279 49-190 (209)
103 PRK13944 protein-L-isoaspartat 97.7 9.2E-05 2E-09 63.6 6.0 75 159-244 69-172 (205)
104 PRK04457 spermidine synthase; 97.6 6.9E-05 1.5E-09 66.9 5.2 80 161-244 65-176 (262)
105 PRK01581 speE spermidine synth 97.6 0.0002 4.4E-09 66.3 8.3 110 161-278 149-297 (374)
106 PRK11805 N5-glutamine S-adenos 97.6 0.0003 6.5E-09 64.2 9.2 103 164-279 135-287 (307)
107 PRK13942 protein-L-isoaspartat 97.6 0.00013 2.8E-09 63.0 6.3 75 159-244 73-175 (212)
108 TIGR01177 conserved hypothetic 97.6 0.00032 7E-09 64.6 8.5 106 159-279 179-316 (329)
109 PRK14966 unknown domain/N5-glu 97.6 0.00048 1E-08 65.0 9.6 106 162-279 251-406 (423)
110 PRK01544 bifunctional N5-gluta 97.5 0.00057 1.2E-08 66.7 9.3 108 162-281 138-297 (506)
111 TIGR00536 hemK_fam HemK family 97.5 0.00065 1.4E-08 61.3 9.1 102 164-277 116-268 (284)
112 PRK07402 precorrin-6B methylas 97.4 0.00051 1.1E-08 58.4 7.6 101 159-276 37-168 (196)
113 PRK11088 rrmA 23S rRNA methylt 97.4 0.00019 4.1E-09 64.3 5.0 72 162-245 85-181 (272)
114 PF05219 DREV: DREV methyltran 97.4 0.00054 1.2E-08 60.4 7.7 113 162-280 94-242 (265)
115 TIGR00080 pimt protein-L-isoas 97.4 0.00032 7E-09 60.6 6.2 75 159-244 74-176 (215)
116 TIGR03439 methyl_EasF probable 97.4 0.001 2.2E-08 61.0 9.6 60 187-249 129-202 (319)
117 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00012 2.5E-09 65.0 3.3 86 190-278 135-239 (256)
118 KOG1975 mRNA cap methyltransfe 97.4 0.00021 4.5E-09 64.5 4.6 80 160-242 115-234 (389)
119 PRK00811 spermidine synthase; 97.4 0.00028 6.2E-09 63.7 5.5 110 161-278 75-219 (283)
120 PF01739 CheR: CheR methyltran 97.4 0.00016 3.5E-09 61.7 3.6 55 187-244 117-174 (196)
121 PF13659 Methyltransf_26: Meth 97.4 0.00013 2.8E-09 56.3 2.7 79 164-245 2-115 (117)
122 PRK10611 chemotaxis methyltran 97.4 0.00029 6.3E-09 63.6 5.3 54 187-243 203-260 (287)
123 TIGR00091 tRNA (guanine-N(7)-) 97.3 0.00038 8.3E-09 59.2 5.6 101 162-274 16-154 (194)
124 TIGR00438 rrmJ cell division p 97.3 0.0022 4.7E-08 54.1 10.2 105 159-279 29-171 (188)
125 COG4976 Predicted methyltransf 97.3 0.00065 1.4E-08 58.7 6.8 142 133-279 94-266 (287)
126 PLN02366 spermidine synthase 97.3 0.00053 1.1E-08 62.6 6.4 108 161-276 90-233 (308)
127 COG4123 Predicted O-methyltran 97.3 0.0011 2.3E-08 58.4 7.7 114 152-279 36-195 (248)
128 COG2813 RsmC 16S RNA G1207 met 97.2 0.0011 2.3E-08 59.8 7.5 89 152-246 151-267 (300)
129 PF03291 Pox_MCEL: mRNA cappin 97.2 0.00041 8.8E-09 64.0 4.7 80 162-244 62-185 (331)
130 TIGR00417 speE spermidine synt 97.2 0.001 2.2E-08 59.6 7.0 109 161-277 71-213 (270)
131 TIGR03704 PrmC_rel_meth putati 97.2 0.0026 5.6E-08 56.4 9.4 106 163-280 87-242 (251)
132 PRK00312 pcm protein-L-isoaspa 97.1 0.0012 2.7E-08 56.7 6.5 76 159-245 75-175 (212)
133 PF08100 Dimerisation: Dimeris 96.9 0.00029 6.3E-09 46.6 0.8 19 33-51 1-19 (51)
134 PRK14904 16S rRNA methyltransf 96.9 0.0054 1.2E-07 58.9 9.0 106 160-273 248-401 (445)
135 COG1352 CheR Methylase of chem 96.9 0.0024 5.1E-08 57.1 6.0 54 187-243 183-239 (268)
136 PLN02781 Probable caffeoyl-CoA 96.8 0.0076 1.6E-07 52.9 8.9 80 160-248 66-180 (234)
137 TIGR00027 mthyl_TIGR00027 meth 96.8 0.0067 1.5E-07 54.1 8.6 112 161-276 80-248 (260)
138 COG3315 O-Methyltransferase in 96.7 0.0086 1.9E-07 54.4 8.5 115 160-277 90-263 (297)
139 KOG1331 Predicted methyltransf 96.7 0.005 1.1E-07 54.9 6.5 91 152-246 36-144 (293)
140 PF09243 Rsm22: Mitochondrial 96.5 0.0046 1E-07 55.6 5.7 66 201-275 100-165 (274)
141 COG4798 Predicted methyltransf 96.5 0.017 3.7E-07 48.8 8.6 89 187-278 104-205 (238)
142 COG2890 HemK Methylase of poly 96.4 0.023 5.1E-07 51.2 9.5 103 165-279 113-264 (280)
143 PRK10901 16S rRNA methyltransf 96.4 0.016 3.4E-07 55.5 8.8 108 160-275 242-398 (427)
144 KOG3010 Methyltransferase [Gen 96.4 0.0058 1.3E-07 53.2 5.2 81 161-246 32-138 (261)
145 PRK14901 16S rRNA methyltransf 96.4 0.016 3.4E-07 55.5 8.8 107 160-274 250-409 (434)
146 PLN02672 methionine S-methyltr 96.4 0.014 2.9E-07 61.5 8.6 105 163-279 119-304 (1082)
147 PRK14902 16S rRNA methyltransf 96.4 0.021 4.6E-07 54.8 9.4 109 160-276 248-406 (444)
148 PRK14121 tRNA (guanine-N(7)-)- 96.3 0.0085 1.8E-07 56.3 6.4 113 161-277 121-285 (390)
149 PRK13943 protein-L-isoaspartat 96.3 0.0083 1.8E-07 55.2 6.0 76 159-245 77-180 (322)
150 COG2519 GCD14 tRNA(1-methylade 96.2 0.016 3.5E-07 50.9 6.7 121 137-278 67-220 (256)
151 PLN02476 O-methyltransferase 96.1 0.027 5.9E-07 50.6 8.0 117 159-284 115-273 (278)
152 COG2518 Pcm Protein-L-isoaspar 96.0 0.02 4.2E-07 49.2 6.2 77 159-246 69-170 (209)
153 PRK14903 16S rRNA methyltransf 95.9 0.039 8.4E-07 52.8 8.6 107 160-274 235-391 (431)
154 PHA03412 putative methyltransf 95.9 0.045 9.7E-07 48.0 8.2 107 163-273 50-197 (241)
155 smart00650 rADc Ribosomal RNA 95.9 0.013 2.9E-07 48.4 4.7 67 159-226 10-99 (169)
156 PF08123 DOT1: Histone methyla 95.8 0.0084 1.8E-07 51.5 3.5 87 159-251 39-164 (205)
157 PF01135 PCMT: Protein-L-isoas 95.8 0.0065 1.4E-07 52.4 2.8 75 159-244 69-171 (209)
158 TIGR00563 rsmB ribosomal RNA s 95.8 0.044 9.6E-07 52.3 8.6 102 160-269 236-387 (426)
159 TIGR00446 nop2p NOL1/NOP2/sun 95.7 0.03 6.5E-07 50.0 6.5 88 159-249 68-203 (264)
160 PLN02823 spermine synthase 95.6 0.018 3.8E-07 53.3 4.7 79 161-243 102-218 (336)
161 PF10294 Methyltransf_16: Puta 95.5 0.017 3.6E-07 48.2 4.0 85 159-248 42-159 (173)
162 COG0421 SpeE Spermidine syntha 95.4 0.023 4.9E-07 51.2 4.9 80 161-244 75-189 (282)
163 KOG1661 Protein-L-isoaspartate 95.4 0.019 4E-07 49.2 4.0 74 160-244 80-192 (237)
164 PF07942 N2227: N2227-like pro 95.4 0.11 2.5E-06 46.4 9.2 87 187-278 143-242 (270)
165 PF05185 PRMT5: PRMT5 arginine 95.3 0.026 5.6E-07 54.3 5.2 112 122-242 151-294 (448)
166 KOG1541 Predicted protein carb 95.3 0.04 8.8E-07 47.6 5.5 108 162-279 50-188 (270)
167 PRK11783 rlmL 23S rRNA m(2)G24 95.2 0.067 1.4E-06 54.4 7.9 107 161-279 537-681 (702)
168 KOG1500 Protein arginine N-met 95.0 0.031 6.8E-07 51.1 4.2 80 159-242 175-279 (517)
169 PF01596 Methyltransf_3: O-met 94.9 0.014 3E-07 50.2 1.7 116 160-285 43-201 (205)
170 PF03059 NAS: Nicotianamine sy 94.8 0.041 9E-07 49.3 4.6 109 162-281 120-260 (276)
171 PRK13168 rumA 23S rRNA m(5)U19 94.8 0.052 1.1E-06 52.1 5.6 102 161-280 296-426 (443)
172 PF08704 GCD14: tRNA methyltra 94.7 0.047 1E-06 48.3 4.6 103 159-279 37-172 (247)
173 PRK00536 speE spermidine synth 94.5 0.091 2E-06 46.9 6.0 102 161-278 71-199 (262)
174 KOG3987 Uncharacterized conser 94.4 0.017 3.6E-07 49.4 1.1 114 162-280 112-262 (288)
175 COG4627 Uncharacterized protei 94.4 0.025 5.4E-07 46.1 2.0 39 203-244 47-85 (185)
176 COG2263 Predicted RNA methylas 94.4 0.26 5.7E-06 41.6 8.1 104 160-278 43-168 (198)
177 PF01564 Spermine_synth: Sperm 94.4 0.12 2.6E-06 45.7 6.5 108 161-276 75-217 (246)
178 COG4301 Uncharacterized conser 94.2 0.11 2.4E-06 45.7 5.7 86 161-249 77-198 (321)
179 COG3897 Predicted methyltransf 94.0 0.22 4.7E-06 42.3 6.9 89 159-252 76-186 (218)
180 PRK15128 23S rRNA m(5)C1962 me 94.0 0.24 5.3E-06 46.9 8.2 99 161-269 219-356 (396)
181 TIGR00755 ksgA dimethyladenosi 93.9 0.092 2E-06 46.4 4.8 67 159-229 26-115 (253)
182 PF03141 Methyltransf_29: Puta 93.8 0.042 9E-07 52.8 2.5 45 200-248 176-222 (506)
183 PRK14896 ksgA 16S ribosomal RN 93.7 0.1 2.2E-06 46.3 4.8 60 159-219 26-106 (258)
184 COG2521 Predicted archaeal met 93.7 0.35 7.7E-06 42.3 7.7 109 160-279 132-278 (287)
185 COG4122 Predicted O-methyltran 93.5 0.13 2.8E-06 44.7 4.8 83 159-250 56-170 (219)
186 KOG3201 Uncharacterized conser 93.5 0.069 1.5E-06 44.0 2.9 80 187-278 82-166 (201)
187 COG5459 Predicted rRNA methyla 93.3 0.07 1.5E-06 49.1 3.0 53 192-247 168-227 (484)
188 PLN02589 caffeoyl-CoA O-methyl 93.3 0.15 3.1E-06 45.2 5.0 80 160-248 77-192 (247)
189 PRK11727 23S rRNA mA1618 methy 93.1 0.21 4.6E-06 45.9 5.8 115 162-279 114-293 (321)
190 TIGR00478 tly hemolysin TlyA f 92.8 0.27 5.8E-06 43.0 5.8 110 162-284 75-225 (228)
191 PF06859 Bin3: Bicoid-interact 92.6 0.055 1.2E-06 41.5 1.2 72 204-280 2-94 (110)
192 PTZ00338 dimethyladenosine tra 92.6 0.18 3.8E-06 45.8 4.6 66 159-225 33-122 (294)
193 PRK03522 rumB 23S rRNA methylu 92.6 0.23 5.1E-06 45.4 5.5 100 162-280 173-298 (315)
194 PRK10909 rsmD 16S rRNA m(2)G96 92.5 0.13 2.9E-06 43.9 3.5 82 162-248 53-161 (199)
195 PF04816 DUF633: Family of unk 92.2 0.37 7.9E-06 41.4 5.8 76 187-279 47-125 (205)
196 COG3963 Phospholipid N-methylt 91.5 0.52 1.1E-05 39.1 5.7 90 152-247 41-158 (194)
197 PRK00274 ksgA 16S ribosomal RN 91.2 0.28 6E-06 43.9 4.3 61 159-219 39-120 (272)
198 TIGR00479 rumA 23S rRNA (uraci 90.7 0.46 1E-05 45.4 5.5 103 160-280 290-422 (431)
199 COG4262 Predicted spermidine s 90.6 0.26 5.7E-06 45.7 3.5 103 161-275 288-433 (508)
200 KOG3191 Predicted N6-DNA-methy 89.9 1.7 3.7E-05 36.6 7.4 104 163-277 44-192 (209)
201 PF07091 FmrO: Ribosomal RNA m 89.4 0.22 4.7E-06 44.0 1.9 111 161-276 104-242 (251)
202 KOG1499 Protein arginine N-met 88.2 0.41 9E-06 44.1 2.9 80 160-242 58-164 (346)
203 TIGR02085 meth_trns_rumB 23S r 87.7 1.1 2.3E-05 42.2 5.4 100 162-280 233-358 (374)
204 KOG2798 Putative trehalase [Ca 85.4 4.6 0.0001 36.9 7.9 88 187-279 237-338 (369)
205 TIGR00095 RNA methyltransferas 85.0 0.91 2E-05 38.4 3.2 82 162-248 49-161 (189)
206 COG0293 FtsJ 23S rRNA methylas 84.7 11 0.00025 32.3 9.7 106 159-280 42-185 (205)
207 PF02390 Methyltransf_4: Putat 84.5 0.32 6.8E-06 41.4 0.2 78 164-245 19-133 (195)
208 PF11899 DUF3419: Protein of u 84.0 2.4 5.1E-05 40.0 5.8 62 187-251 274-340 (380)
209 COG4076 Predicted RNA methylas 83.8 0.94 2E-05 38.4 2.6 58 187-247 79-137 (252)
210 PRK04148 hypothetical protein; 83.4 2.5 5.5E-05 33.7 4.9 78 162-251 16-114 (134)
211 PF01861 DUF43: Protein of unk 81.2 5.7 0.00012 35.0 6.6 106 162-279 44-179 (243)
212 PF05430 Methyltransf_30: S-ad 80.9 1.8 3.9E-05 34.1 3.2 49 215-282 67-115 (124)
213 KOG2352 Predicted spermine/spe 79.3 6.7 0.00015 37.9 7.0 86 165-253 51-171 (482)
214 PF01269 Fibrillarin: Fibrilla 78.2 7.3 0.00016 33.9 6.3 115 159-281 70-215 (229)
215 PF14740 DUF4471: Domain of un 77.2 1.4 3.1E-05 39.8 1.7 77 187-275 199-286 (289)
216 KOG3115 Methyltransferase-like 76.6 5.6 0.00012 34.2 5.0 59 187-248 116-186 (249)
217 KOG1269 SAM-dependent methyltr 75.3 3.5 7.6E-05 38.6 3.9 58 187-249 159-219 (364)
218 KOG1663 O-methyltransferase [S 74.8 6 0.00013 34.5 4.9 81 160-249 71-186 (237)
219 PF09445 Methyltransf_15: RNA 74.8 0.72 1.6E-05 38.2 -0.8 91 164-268 1-134 (163)
220 COG0357 GidB Predicted S-adeno 73.6 11 0.00024 32.6 6.2 78 187-279 116-196 (215)
221 PRK13699 putative methylase; P 73.0 23 0.00051 30.7 8.3 45 219-275 49-93 (227)
222 PRK11933 yebU rRNA (cytosine-C 72.7 9.6 0.00021 37.0 6.2 60 187-249 163-246 (470)
223 cd01842 SGNH_hydrolase_like_5 72.6 6.3 0.00014 33.1 4.3 43 203-249 50-102 (183)
224 PF04072 LCM: Leucine carboxyl 72.3 3 6.4E-05 34.9 2.4 69 161-229 77-183 (183)
225 KOG2940 Predicted methyltransf 72.3 2.8 6E-05 36.7 2.2 109 162-276 72-225 (325)
226 KOG3420 Predicted RNA methylas 71.3 1.8 4E-05 35.1 0.8 54 161-214 47-125 (185)
227 COG1889 NOP1 Fibrillarin-like 71.0 69 0.0015 27.7 10.3 92 180-280 116-216 (231)
228 PRK11760 putative 23S rRNA C24 70.9 36 0.00077 31.8 9.2 104 160-271 209-332 (357)
229 KOG3924 Putative protein methy 67.7 7.4 0.00016 36.7 4.1 86 159-250 189-313 (419)
230 KOG0820 Ribosomal RNA adenine 66.0 13 0.00029 33.4 5.1 51 159-209 55-129 (315)
231 TIGR02764 spore_ybaN_pdaB poly 64.4 14 0.00031 30.7 5.0 57 214-276 131-187 (191)
232 COG2520 Predicted methyltransf 62.9 30 0.00066 32.1 7.1 102 161-273 187-315 (341)
233 PRK00050 16S rRNA m(4)C1402 me 62.9 6.1 0.00013 35.9 2.6 59 148-209 7-96 (296)
234 PF02527 GidB: rRNA small subu 60.5 5.7 0.00012 33.5 1.8 78 187-279 97-176 (184)
235 KOG4589 Cell division protein 60.5 78 0.0017 27.1 8.4 14 160-173 67-80 (232)
236 PF03492 Methyltransf_7: SAM d 59.9 43 0.00094 30.9 7.7 53 222-277 163-252 (334)
237 PLN02668 indole-3-acetate carb 59.4 70 0.0015 30.3 9.0 84 191-277 147-308 (386)
238 PRK04338 N(2),N(2)-dimethylgua 57.7 15 0.00032 34.7 4.3 73 163-244 58-157 (382)
239 KOG2918 Carboxymethyl transfer 57.7 24 0.00052 32.3 5.3 70 206-279 191-278 (335)
240 COG1189 Predicted rRNA methyla 57.3 52 0.0011 29.0 7.2 118 152-279 71-225 (245)
241 KOG2904 Predicted methyltransf 50.5 44 0.00095 30.3 5.7 48 161-208 147-227 (328)
242 PF07757 AdoMet_MTase: Predict 49.7 10 0.00022 29.2 1.4 13 161-173 57-69 (112)
243 PF00398 RrnaAD: Ribosomal RNA 48.7 44 0.00096 29.5 5.7 72 152-230 23-119 (262)
244 PF10017 Methyltransf_33: Hist 48.0 31 0.00067 27.0 4.1 31 255-285 94-125 (127)
245 COG1092 Predicted SAM-dependen 47.9 21 0.00046 33.8 3.6 84 174-269 245-353 (393)
246 COG0503 Apt Adenine/guanine ph 47.8 43 0.00094 27.9 5.2 44 228-279 109-152 (179)
247 COG0030 KsgA Dimethyladenosine 47.4 37 0.0008 30.3 4.9 68 159-226 27-117 (259)
248 PF00549 Ligase_CoA: CoA-ligas 47.4 8.5 0.00019 31.4 0.8 103 161-273 34-139 (153)
249 KOG1562 Spermidine synthase [A 47.1 51 0.0011 30.1 5.7 83 160-246 119-237 (337)
250 PF03514 GRAS: GRAS domain fam 46.7 53 0.0011 30.9 6.1 20 258-277 311-330 (374)
251 PF01728 FtsJ: FtsJ-like methy 46.6 20 0.00044 29.5 3.0 102 162-279 23-164 (181)
252 TIGR01033 DNA-binding regulato 44.1 28 0.00061 30.6 3.6 51 223-275 108-165 (238)
253 KOG2730 Methylase [General fun 41.2 7.4 0.00016 33.9 -0.5 14 187-200 142-155 (263)
254 PF07109 Mg-por_mtran_C: Magne 40.3 97 0.0021 23.3 5.4 63 211-280 3-84 (97)
255 PF03141 Methyltransf_29: Puta 40.3 59 0.0013 31.8 5.3 111 159-281 362-494 (506)
256 COG0217 Uncharacterized conser 39.7 42 0.00091 29.5 3.9 51 223-275 108-165 (241)
257 PRK01544 bifunctional N5-gluta 39.6 46 0.001 32.6 4.7 101 162-274 347-484 (506)
258 COG4353 Uncharacterized conser 39.5 54 0.0012 27.0 4.2 55 222-280 73-132 (192)
259 PRK00110 hypothetical protein; 38.3 42 0.00091 29.6 3.8 65 206-276 95-164 (245)
260 PRK05031 tRNA (uracil-5-)-meth 37.8 12 0.00025 35.1 0.2 36 164-199 208-265 (362)
261 COG0500 SmtA SAM-dependent met 37.2 62 0.0013 23.9 4.3 55 190-250 100-160 (257)
262 PF02475 Met_10: Met-10+ like- 35.4 12 0.00025 32.1 -0.2 73 160-241 99-198 (200)
263 COG2384 Predicted SAM-dependen 35.4 3E+02 0.0066 24.0 9.1 73 187-276 66-141 (226)
264 PF01709 Transcrip_reg: Transc 35.1 13 0.00028 32.6 0.1 52 222-275 103-161 (234)
265 TIGR02143 trmA_only tRNA (urac 35.1 14 0.0003 34.4 0.3 36 164-199 199-256 (353)
266 COG1902 NemA NADH:flavin oxido 34.5 1.9E+02 0.0041 27.2 7.6 69 211-282 72-174 (363)
267 PRK12378 hypothetical protein; 34.0 50 0.0011 29.0 3.5 59 206-271 92-156 (235)
268 COG0220 Predicted S-adenosylme 33.6 2.1E+02 0.0046 24.8 7.4 78 164-245 50-164 (227)
269 PF11432 DUF3197: Protein of u 32.8 96 0.0021 23.7 4.3 27 255-281 58-84 (113)
270 PF03602 Cons_hypoth95: Conser 32.4 13 0.00027 31.3 -0.5 83 161-249 41-156 (183)
271 PRK01747 mnmC bifunctional tRN 31.7 95 0.0021 31.4 5.6 69 191-278 150-227 (662)
272 PF10354 DUF2431: Domain of un 31.3 2.4E+02 0.0052 23.1 7.0 68 204-280 76-154 (166)
273 PF06557 DUF1122: Protein of u 30.5 27 0.00059 28.8 1.2 55 222-280 66-125 (170)
274 COG5379 BtaA S-adenosylmethion 29.8 55 0.0012 29.9 3.1 56 187-245 306-366 (414)
275 PRK06719 precorrin-2 dehydroge 29.8 56 0.0012 26.5 3.0 48 162-210 12-77 (157)
276 PF11253 DUF3052: Protein of u 28.5 3E+02 0.0064 21.8 7.2 69 204-281 46-114 (127)
277 cd05290 LDH_3 A subgroup of L- 27.3 2E+02 0.0043 26.2 6.4 71 174-246 41-120 (307)
278 TIGR02873 spore_ylxY probable 27.3 1E+02 0.0022 27.5 4.5 56 213-277 209-264 (268)
279 PF13578 Methyltransf_24: Meth 26.8 36 0.00078 25.1 1.3 53 187-245 48-105 (106)
280 PF11312 DUF3115: Protein of u 26.5 36 0.00079 31.2 1.4 56 189-247 176-244 (315)
281 PF05711 TylF: Macrocin-O-meth 26.4 56 0.0012 28.9 2.6 86 177-273 142-233 (248)
282 PF04989 CmcI: Cephalosporin h 25.9 1.3E+02 0.0028 25.8 4.6 83 187-274 84-186 (206)
283 PF01206 TusA: Sulfurtransfera 25.6 2.2E+02 0.0047 19.2 5.6 51 223-284 15-65 (70)
284 KOG2793 Putative N2,N2-dimethy 25.6 2.5E+02 0.0054 24.9 6.5 80 162-247 86-201 (248)
285 PRK13663 hypothetical protein; 25.4 68 0.0015 30.7 3.0 89 187-282 19-145 (493)
286 KOG4058 Uncharacterized conser 25.1 1.1E+02 0.0023 25.2 3.7 80 163-250 73-177 (199)
287 PRK09213 pur operon repressor; 24.9 1.5E+02 0.0032 26.7 5.0 41 230-278 191-231 (271)
288 cd03423 SirA SirA (also known 24.6 2.3E+02 0.005 19.2 6.9 49 224-283 15-63 (69)
289 PF09822 ABC_transp_aux: ABC-t 24.1 3.3E+02 0.0073 23.8 7.2 78 190-274 182-265 (271)
290 KOG2539 Mitochondrial/chloropl 24.1 1E+02 0.0022 29.9 4.0 44 203-249 274-319 (491)
291 KOG1709 Guanidinoacetate methy 23.8 1.6E+02 0.0035 25.8 4.7 83 160-247 99-208 (271)
292 PRK09219 xanthine phosphoribos 23.5 1.6E+02 0.0036 24.7 4.8 37 231-275 113-149 (189)
293 PF07927 YcfA: YcfA-like prote 23.2 95 0.002 20.1 2.7 17 260-276 2-18 (56)
294 PRK09019 translation initiatio 23.0 3.3E+02 0.0071 20.9 5.9 51 215-274 54-104 (108)
295 TIGR01744 XPRTase xanthine pho 22.8 1.9E+02 0.0041 24.4 5.0 39 231-277 113-151 (191)
296 PF13679 Methyltransf_32: Meth 22.8 53 0.0011 25.9 1.6 67 160-230 23-122 (141)
297 TIGR01743 purR_Bsub pur operon 22.7 1.5E+02 0.0032 26.6 4.5 41 230-278 189-229 (268)
298 PF08845 SymE_toxin: Toxin Sym 22.5 37 0.0008 22.8 0.5 11 263-273 30-40 (57)
299 TIGR02148 Fibro_Slime fibro-sl 21.9 48 0.001 24.5 1.1 16 158-173 31-46 (90)
300 PRK08558 adenine phosphoribosy 21.4 1.8E+02 0.0038 25.5 4.7 41 230-278 171-211 (238)
301 PF01963 TraB: TraB family; I 20.9 2.1E+02 0.0046 24.6 5.2 51 216-276 208-259 (259)
302 PF12757 DUF3812: Protein of u 20.7 41 0.0009 26.4 0.6 25 161-185 55-79 (126)
303 TIGR00006 S-adenosyl-methyltra 20.6 1.3E+02 0.0028 27.5 3.8 38 211-251 209-246 (305)
304 PRK07535 methyltetrahydrofolat 20.3 99 0.0022 27.5 3.0 39 130-173 9-48 (261)
305 COG0275 Predicted S-adenosylme 20.0 1.4E+02 0.0031 27.3 3.9 35 215-252 217-251 (314)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=2.2e-41 Score=303.44 Aligned_cols=265 Identities=28% Similarity=0.399 Sum_probs=237.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhCCCCC-------------CCChhhhhhh-------------h--ccc
Q 043585 17 EGHGQITGLFLNNLSPMSLKGAVELGRADIIHSHGKPT-------------KTSNPFRFMQ-------------E--DYD 68 (287)
Q Consensus 17 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~-------------~~~~l~rlLr-------------~--~y~ 68 (287)
....++++++.++..+++|++|+||||||+|.+.+.+. +|..+.|+|| + .|+
T Consensus 5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~ 84 (342)
T KOG3178|consen 5 EASLRAMRLANGFALPMVLKAACELGVFDILANAGSPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYS 84 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCCHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecceeee
Confidence 44667999999999999999999999999999987321 6778999998 4 699
Q ss_pred cchhhhHhh-cCCCCChHhhHhhcCCcchHHHHHHHHHhHhcCCCcccccccCCChhhhhccCchHHHHHHHHHHhcccc
Q 043585 69 LTPISTLLI-KDKSYCLSPLVSGILDPDNIFLLHFISKLFKGNDVSVWETVRGMKHWEIMSQNPRLSQRFNQAMVNDSEM 147 (287)
Q Consensus 69 lt~~s~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~aM~~~s~~ 147 (287)
++++++++. ..+..+++.++...+++..++.|..|.++++.|+ .+|..++|+..|+|...++.....|+++|...+..
T Consensus 85 ~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~ 163 (342)
T KOG3178|consen 85 ATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTL 163 (342)
T ss_pred ccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHH
Confidence 999999654 4444689999988888899999999999999998 69999999889999999999999999999999988
Q ss_pred hhhH-hhhcccccccCcceEEEecCcc-----------------cccchhhhhcCCCC-CCceeeeccCcccCCCCCeEE
Q 043585 148 ATFI-VKDCCRTLIERLGSMVDVGGGN-----------------VLDLPHAVANTPQT-ENLKYVADDMFQFIPPADAYF 208 (287)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dlp~vi~~a~~~-~Ri~~~~gd~~~~~p~~D~~~ 208 (287)
..+. ++.+ . .|++...+||||||. .||+|.|++.++.. +.|+.+.||+|+..|.+|+||
T Consensus 164 ~~~~il~~~-~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~ 241 (342)
T KOG3178|consen 164 VMKKILEVY-T-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIW 241 (342)
T ss_pred HHHhhhhhh-c-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEE
Confidence 7766 7777 5 588999999999999 79999999999875 889999999999999999999
Q ss_pred eccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC-CCC---------------------CCCCHHHHHHHH
Q 043585 209 FMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK-EDE---------------------DQRTDKEWKTLF 266 (287)
Q Consensus 209 l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~-~~~---------------------~~rt~~e~~~ll 266 (287)
++||||||+|++|++||+||+++|+| +|+|+|+|.+.++. ... ++|+.+||+.++
T Consensus 242 mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~ 318 (342)
T KOG3178|consen 242 MKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALL 318 (342)
T ss_pred EEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcc
Confidence 99999999999999999999999999 99999999999862 211 899999999999
Q ss_pred HhCCCcEEEEEecCCccceeC
Q 043585 267 LDAGFTCCKITTMFGLKSLIK 287 (287)
Q Consensus 267 ~~aGf~~~~~~~~~~~~s~ie 287 (287)
.++||.+..+...+...++||
T Consensus 319 ~~~gF~~~~~~~~~~~~~~Ie 339 (342)
T KOG3178|consen 319 PEEGFPVCMVALTAYSYSVIE 339 (342)
T ss_pred hhhcCceeEEEeccCccchhe
Confidence 999999999999988888887
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=3.2e-39 Score=284.31 Aligned_cols=196 Identities=29% Similarity=0.576 Sum_probs=172.4
Q ss_pred hccccchhhhHhhcCCC-CChHhhHhhcCCcchHHHHHHHHHhHhcCCCcccccccCCChhhhhccCchHHHHHHHHHHh
Q 043585 65 EDYDLTPISTLLIKDKS-YCLSPLVSGILDPDNIFLLHFISKLFKGNDVSVWETVRGMKHWEIMSQNPRLSQRFNQAMVN 143 (287)
Q Consensus 65 ~~y~lt~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~aM~~ 143 (287)
++|+||++|+.|..+++ .++..++.+...+..+..|.+|++++++|+ ++|+..+|.++|++++++|+..+.|+++|..
T Consensus 4 ~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 4 DRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp EEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 57999999997666554 678888888667889999999999999998 7999999989999999999999999999999
Q ss_pred cccchh-hH-hhhcccccccCcceEEEecCcc-----------------cccchhhhhcCCCCCCceeeeccCcccCCCC
Q 043585 144 DSEMAT-FI-VKDCCRTLIERLGSMVDVGGGN-----------------VLDLPHAVANTPQTENLKYVADDMFQFIPPA 204 (287)
Q Consensus 144 ~s~~~~-~~-~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~~~p~~ 204 (287)
.+.... +. +..+ ++++.++|||||||+ ++|+|+|++.+++.+||++++||||+++|.+
T Consensus 83 ~~~~~~~~~~~~~~---d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 83 YSRLNAFDILLEAF---DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHS---TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred hhhcchhhhhhccc---cccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 988776 66 7777 789999999999998 9999999999988999999999999999999
Q ss_pred CeEEeccccccCChHHHHHHHHHHHHHhcCCCCC--cEEEEEeeccCCCCCC--------------------CCCCHHHH
Q 043585 205 DAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQR--GKVLIMDIVINEKEDE--------------------DQRTDKEW 262 (287)
Q Consensus 205 D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~--g~lli~e~~~~~~~~~--------------------~~rt~~e~ 262 (287)
|+|++++|||+|+|++|++||++++++|+| | |+|+|+|.++++.+.. ++||.+||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~ 236 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEW 236 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 999999999999999999999999999999 8 9999999999888754 99999999
Q ss_pred HHHHH
Q 043585 263 KTLFL 267 (287)
Q Consensus 263 ~~ll~ 267 (287)
++||.
T Consensus 237 ~~ll~ 241 (241)
T PF00891_consen 237 EALLK 241 (241)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99984
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.98 E-value=1.4e-31 Score=243.77 Aligned_cols=232 Identities=18% Similarity=0.289 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhChhhHhhhCCCCC---------CCChhhhhhh------------hccccchhhh-HhhcCCCC---ChH
Q 043585 31 SPMSLKGAVELGRADIIHSHGKPT---------KTSNPFRFMQ------------EDYDLTPIST-LLIKDKSY---CLS 85 (287)
Q Consensus 31 ~~~~L~~a~~lglfd~L~~~~~~~---------~~~~l~rlLr------------~~y~lt~~s~-~L~~~~~~---~~~ 85 (287)
...+|++|++|||||+|.+++.++ +++.+.|+|| ++|+||+.++ +|.++++. ++.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~ 82 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQT 82 (306)
T ss_pred hHHHHHHHHHcCcHHHHhcCCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhhcC
Confidence 578999999999999999876654 8899999998 7999999999 45444432 222
Q ss_pred hhHhhcCCcchHHHHHHHHHhHhcCCCcccccccCCChhhhhccCchHHHHHHHHHH-hcccchhhH-hhhcccccccCc
Q 043585 86 PLVSGILDPDNIFLLHFISKLFKGNDVSVWETVRGMKHWEIMSQNPRLSQRFNQAMV-NDSEMATFI-VKDCCRTLIERL 163 (287)
Q Consensus 86 ~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~aM~-~~s~~~~~~-~~~~~~~~~~~~ 163 (287)
+++.++. ......|.+|++++|++ ++|...++ +....++.. .|...|. ..+....+. ++.. ++++.
T Consensus 83 ~~~~~~~-~~~~~~~~~l~~~~r~~--~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~---~~~~~ 150 (306)
T TIGR02716 83 PVAKAMA-FLADDFYMGLSQAVRGQ--KNFKGQVP-----YPPVTREDN-LYFEEIHRSNAKFAIQLLLEEA---KLDGV 150 (306)
T ss_pred chHHHHH-HHHHHHHHhHHHHhcCC--cccccccC-----CCCCCHHHH-HhHHHHHHhcchhHHHHHHHHc---CCCCC
Confidence 3444432 12346789999999843 34543222 112223333 3444444 333333454 6666 67888
Q ss_pred ceEEEecCcc-----------------cccchhhhhcCCC-------CCCceeeeccCcc-cCCCCCeEEeccccccCCh
Q 043585 164 GSMVDVGGGN-----------------VLDLPHAVANTPQ-------TENLKYVADDMFQ-FIPPADAYFFMLFFHAFGG 218 (287)
Q Consensus 164 ~~vlDvGgG~-----------------v~Dlp~vi~~a~~-------~~Ri~~~~gd~~~-~~p~~D~~~l~~vlh~~~d 218 (287)
.+|||||||+ ++|+|++++.+++ .+||+++++|+++ ++|++|+|++++++|+|++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~ 230 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANE 230 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCCh
Confidence 9999999999 8999999988753 5799999999997 6778999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-------------------CCCCHHHHHHHHHhCCCcEEEEE
Q 043585 219 EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-------------------DQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 219 ~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-------------------~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
+++.++|++++++|+| ||+|+|+|.++++...+ .-++.+||.+||+++||+.+++.
T Consensus 231 ~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 231 QLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEec
Confidence 9999999999999999 99999999988665432 23457999999999999988764
No 4
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.38 E-value=3.7e-12 Score=113.66 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=97.8
Q ss_pred hhhcccccccCcceEEEecCcc----------------cccc-hhhhhcCCC----CCCceeeeccCcc-cCC--CCCeE
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN----------------VLDL-PHAVANTPQ----TENLKYVADDMFQ-FIP--PADAY 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~-~~p--~~D~~ 207 (287)
+..+ ...+..+|||||||. .+|+ |.+++.+++ .++++++.+|+.+ ++| .||+|
T Consensus 45 l~~l---~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 45 LSDI---ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred HHhC---CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEE
Confidence 4555 567778999999998 4555 555555543 4689999999987 666 49999
Q ss_pred EeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-------------CCCCHHHHHHHHHhCCCcEE
Q 043585 208 FFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-------------DQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 208 ~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-------------~~rt~~e~~~ll~~aGf~~~ 274 (287)
+...++|+++.++..++|+++++.|+| ||++++.|......... ...+.++|.++|+++||+.+
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 999998888877788999999999999 99999999866542211 23588999999999999999
Q ss_pred EEEecC
Q 043585 275 KITTMF 280 (287)
Q Consensus 275 ~~~~~~ 280 (287)
...+..
T Consensus 199 ~~~d~~ 204 (263)
T PTZ00098 199 VAKDIS 204 (263)
T ss_pred eEEeCc
Confidence 888753
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.36 E-value=2.6e-12 Score=112.96 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=93.1
Q ss_pred cCcceEEEecCcc-------------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCCCCCeEEeccc
Q 043585 161 ERLGSMVDVGGGN-------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIPPADAYFFMLF 212 (287)
Q Consensus 161 ~~~~~vlDvGgG~-------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p~~D~~~l~~v 212 (287)
....+|||||||. .+|+ |.+++.+++ ..+++++.+|+.+ +++.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 4567999999998 4555 677777653 3579999999988 6667999999999
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------------------------CCCCH
Q 043585 213 FHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------------------------DQRTD 259 (287)
Q Consensus 213 lh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------------------------~~rt~ 259 (287)
+|++++++...+|++++++|+| ||.+++.|.+.+++... ...|.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999998899999999999999 99999999876543211 34689
Q ss_pred HHHHHHHHhCCCcEEEE
Q 043585 260 KEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 260 ~e~~~ll~~aGf~~~~~ 276 (287)
+|+.+++++|||+.+++
T Consensus 209 ~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 209 ETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHcCCchHHH
Confidence 99999999999986554
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.32 E-value=6.6e-13 Score=116.32 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=65.9
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcc-cCCC--CCeEEecc
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FIPP--ADAYFFML 211 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~p~--~D~~~l~~ 211 (287)
...+.+|||||||+ .+|. +.+++.+++ ..+|+++.+|..+ |+|. +|+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 45677999999999 5675 777887763 4589999999988 7773 99999999
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC----------------------------------CCC
Q 043585 212 FFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE----------------------------------DQR 257 (287)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~----------------------------------~~r 257 (287)
.||+++|. .+.|+++++.|+| ||+++|+|...++.+.- .-.
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~ 199 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFP 199 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHHHHHHH-------------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccc
Confidence 99999986 4789999999999 99999999988875311 345
Q ss_pred CHHHHHHHHHhCCCcEEEEEecC
Q 043585 258 TDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 258 t~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
+.+|+.++++++||+.++..+..
T Consensus 200 ~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 200 SPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 78999999999999998887774
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=7.4e-12 Score=110.71 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=92.5
Q ss_pred cCcceEEEecCcc-------------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCCCCCeEEeccc
Q 043585 161 ERLGSMVDVGGGN-------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIPPADAYFFMLF 212 (287)
Q Consensus 161 ~~~~~vlDvGgG~-------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p~~D~~~l~~v 212 (287)
....+|||||||+ .+|. |.+++.+++ ..+++++.+|+.+ +.+.+|++++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4568999999998 4555 677777653 3489999999988 5667999999999
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------------------------CCCCH
Q 043585 213 FHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------------------------DQRTD 259 (287)
Q Consensus 213 lh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------------------------~~rt~ 259 (287)
+|..++++...++++++++|+| ||.+++.|.+..+.... ..-|.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999988889999999999999 99999999776554321 23489
Q ss_pred HHHHHHHHhCCCcEEEE
Q 043585 260 KEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 260 ~e~~~ll~~aGf~~~~~ 276 (287)
++..+||++|||+.+.+
T Consensus 212 ~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 212 ETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHcCchhHHH
Confidence 99999999999986543
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=1.3e-11 Score=107.67 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=96.7
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcc-cCC--CCCeEEeccccc
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FIP--PADAYFFMLFFH 214 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh 214 (287)
.+.+|||||||+ ++|. +.+++.+++ -..|+|+.+|+.. |+| ++|+|.++..||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 678999999999 6776 778888864 1229999999999 888 499999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-----------------------------------CCCCH
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-----------------------------------DQRTD 259 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-----------------------------------~~rt~ 259 (287)
+++|.+ +.|++++|.|+| ||+++++|.-.++.+.. +..+.
T Consensus 131 nv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~ 205 (238)
T COG2226 131 NVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQ 205 (238)
T ss_pred cCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCH
Confidence 999864 899999999999 99999999988776532 56789
Q ss_pred HHHHHHHHhCCCcEEEEEec
Q 043585 260 KEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 260 ~e~~~ll~~aGf~~~~~~~~ 279 (287)
+++.++++++||+.+.....
T Consensus 206 ~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 206 EELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHHHHHhcCceEEeeEee
Confidence 99999999999998885555
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.27 E-value=3e-11 Score=107.71 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=93.3
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC---------CCCceeeeccCcc-cCC--CCCeEE
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ---------TENLKYVADDMFQ-FIP--PADAYF 208 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~---------~~Ri~~~~gd~~~-~~p--~~D~~~ 208 (287)
.....+|||||||+ .+|. +++++.|++ .++++++.+|+.+ |++ .+|+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 45568999999999 3454 566666542 3579999999987 666 399999
Q ss_pred eccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------------------------C
Q 043585 209 FMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------------------------D 255 (287)
Q Consensus 209 l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------------------------~ 255 (287)
+..++|++++. .++|+++++.|+| ||++++.|...++.... .
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999999875 5799999999999 99999999876543100 2
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 256 QRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 256 ~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
-++.+|+.++++++||+.++.....+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~ 251 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISG 251 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCC
Confidence 35899999999999999998888754
No 10
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.24 E-value=4.9e-11 Score=103.28 Aligned_cols=112 Identities=23% Similarity=0.328 Sum_probs=93.6
Q ss_pred cccCcceEEEecCcc-----------------------cccc-hhhhhcCCC---------CCCceeeeccCcc-cCCC-
Q 043585 159 LIERLGSMVDVGGGN-----------------------VLDL-PHAVANTPQ---------TENLKYVADDMFQ-FIPP- 203 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------------v~Dl-p~vi~~a~~---------~~Ri~~~~gd~~~-~~p~- 203 (287)
......++|||+||+ ++|. |+++..+++ ..|+.++++|.-+ |+|.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 344568999999999 6776 888877653 5679999999999 8884
Q ss_pred -CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC----------------------------
Q 043585 204 -ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------------------- 254 (287)
Q Consensus 204 -~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------------------- 254 (287)
+|.|.++.-+.+|++.+ +.|+.+++.|+| ||++.++|+---++..-
T Consensus 177 s~D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred cceeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhh
Confidence 99999999999999974 899999999999 99999999765442110
Q ss_pred ------CCCCHHHHHHHHHhCCCcEEE
Q 043585 255 ------DQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 255 ------~~rt~~e~~~ll~~aGf~~~~ 275 (287)
+-.+.+|+..+.++|||..+.
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 556889999999999999886
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.21 E-value=1.3e-10 Score=101.47 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=93.2
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcc-cCC--CCCeEEec
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FIP--PADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~p--~~D~~~l~ 210 (287)
......+|||+|||. .+|+ |.+++.+++ .++++++.+|+.+ +++ .+|+|++.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 455678999999998 4565 566655542 4689999999987 555 49999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC----------------------------------CC
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE----------------------------------DQ 256 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~----------------------------------~~ 256 (287)
..+|++++. .++|+++.+.|+| ||++++++...+....- .-
T Consensus 122 ~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
T TIGR02752 122 FGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDF 196 (231)
T ss_pred cccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHc
Confidence 999998875 4799999999999 99999988654332100 23
Q ss_pred CCHHHHHHHHHhCCCcEEEEEecC-Cccc
Q 043585 257 RTDKEWKTLFLDAGFTCCKITTMF-GLKS 284 (287)
Q Consensus 257 rt~~e~~~ll~~aGf~~~~~~~~~-~~~s 284 (287)
.+.+|+.++|+++||+.+++.... |..+
T Consensus 197 ~~~~~l~~~l~~aGf~~~~~~~~~~g~~~ 225 (231)
T TIGR02752 197 PGMDELAEMFQEAGFKDVEVKSYTGGVAA 225 (231)
T ss_pred CCHHHHHHHHHHcCCCeeEEEEcccceEE
Confidence 467899999999999999988885 5443
No 12
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.18 E-value=8.4e-11 Score=108.09 Aligned_cols=115 Identities=25% Similarity=0.288 Sum_probs=90.9
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC---CCCceeeeccCcc-cCC--CCCeEEeccccccCC
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ---TENLKYVADDMFQ-FIP--PADAYFFMLFFHAFG 217 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~---~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~ 217 (287)
...+|||||||+ .+|. +.+++.+++ ..+++++.+|+.+ +++ .+|+|++..++|+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999998 3554 556666554 4679999999987 555 399999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC--------CCCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE--------DQRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~--------~~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
+.+ ++|+++++.|+| ||++++++.+.++.... ..++.+|+.++|+++||+.+++.+...
T Consensus 193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred CHH--HHHHHHHHhcCC---CcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 875 689999999999 99999987665432111 235899999999999999998887643
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.18 E-value=1.7e-10 Score=106.77 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=89.3
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCC--CCCeEEecccc
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIP--PADAYFFMLFF 213 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p--~~D~~~l~~vl 213 (287)
....+|||||||. .+|+ |..++.+++ .++++++.+|+.+ +++ .+|+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 4568999999998 4565 445554432 4689999999988 665 49999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC---CC-------------------CCCCHHHHHHHHHhCCC
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE---DE-------------------DQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~---~~-------------------~~rt~~e~~~ll~~aGf 271 (287)
|+++|. .++|+++++.|+| ||+++|.+....... .. ...+.++|.++++++||
T Consensus 197 ~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf 271 (340)
T PLN02244 197 EHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGL 271 (340)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCC
Confidence 999875 5899999999999 999999886532111 00 12378999999999999
Q ss_pred cEEEEEecC
Q 043585 272 TCCKITTMF 280 (287)
Q Consensus 272 ~~~~~~~~~ 280 (287)
..+++....
T Consensus 272 ~~v~~~d~s 280 (340)
T PLN02244 272 QDIKTEDWS 280 (340)
T ss_pred CeeEeeeCc
Confidence 999887663
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.16 E-value=1.9e-10 Score=105.58 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=86.1
Q ss_pred CcceEEEecCcc----------------cccchh-hhhcC-------CCCCCceeeeccCcc-cCC-CCCeEEecccccc
Q 043585 162 RLGSMVDVGGGN----------------VLDLPH-AVANT-------PQTENLKYVADDMFQ-FIP-PADAYFFMLFFHA 215 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dlp~-vi~~a-------~~~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~ 215 (287)
...+|||||||. .+|..+ .+..+ ....+|.++.+|+.+ +.+ .||+|++..+||+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H 201 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH 201 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence 458999999999 566422 22211 124589999999877 544 4999999999998
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------CCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------DQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
..+. ..+|+++++.|+| ||++++-+.+++..... ..+|.+++..||+++||+.+++...
T Consensus 202 ~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 202 RRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred cCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 8765 4789999999999 99998876665443321 2458999999999999999988765
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=2.3e-10 Score=110.35 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=92.4
Q ss_pred ccCcceEEEecCcc----------------cccc-hhhhhcCCC-----CCCceeeeccCcc-cCC--CCCeEEeccccc
Q 043585 160 IERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQ-FIP--PADAYFFMLFFH 214 (287)
Q Consensus 160 ~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh 214 (287)
.....+|||||||. .+|+ +..++.|++ ..+++|+.+|+++ ++| .+|+|++..++|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 45567999999998 5666 556665542 4689999999988 565 399999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC------------CCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE------------DQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~------------~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
++.+. .++|+++++.|+| ||++++.+......... ..++.+++.++++++||+++.+...
T Consensus 344 h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 344 HIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred ccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 99875 4899999999999 99999998876543221 4578999999999999999877654
No 16
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.15 E-value=3.3e-11 Score=102.87 Aligned_cols=116 Identities=19% Similarity=0.347 Sum_probs=78.9
Q ss_pred cCcceEEEecCcc-------------cccc----hhhhhcCCC-----CCCce-eee-c-cCcccCC-CCCeEEeccccc
Q 043585 161 ERLGSMVDVGGGN-------------VLDL----PHAVANTPQ-----TENLK-YVA-D-DMFQFIP-PADAYFFMLFFH 214 (287)
Q Consensus 161 ~~~~~vlDvGgG~-------------v~Dl----p~vi~~a~~-----~~Ri~-~~~-g-d~~~~~p-~~D~~~l~~vlh 214 (287)
.+..+.||+|+|. -+|+ +.-++.|++ ..++. +.. | --|+|.+ .||+||+.|++-
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 3568999999999 2333 444555542 23432 222 2 2233444 499999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-------CCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-------DEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-------~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
+.+|++.+.+|++|+++|+| +|.|+|-|.+..... .+-.||.+.|+++|++||+++++...=
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 99999999999999999999 899999999876543 127899999999999999999876543
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.13 E-value=4.4e-10 Score=96.08 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=88.7
Q ss_pred ccCcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcc-cCC-CCCeEEecccccc
Q 043585 160 IERLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FIP-PADAYFFMLFFHA 215 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~ 215 (287)
.....+|||+|||. .+|. |.+++.+++ ..++++..+|+.+ +++ .||+|++..++|.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 44568999999999 6777 666666553 3458888999877 444 4999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-----CCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-----DEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-----~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
+++++...++++++++|+| ||.+++++.+-.++. .+...+.+|+.++++ ||++....
T Consensus 108 ~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred CCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 9988899999999999999 999877765543321 125678999999997 89887653
No 18
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.11 E-value=4e-10 Score=97.85 Aligned_cols=111 Identities=14% Similarity=0.256 Sum_probs=85.5
Q ss_pred ceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCC-CCCeEEeccccccC
Q 043585 164 GSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIP-PADAYFFMLFFHAF 216 (287)
Q Consensus 164 ~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~~ 216 (287)
++|||||||. .+|+ |..++.+++ .++++++.+|+.. +.+ .||+|+...++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999998 2343 334444432 5689999999976 455 49999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-------CCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED-------EDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~-------~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
.+. ..+|+++++.|+| ||++++.+...+.... ....+.++|.++++++||++++....
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 774 5899999999999 9999999875432111 13568899999999999999988775
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.09 E-value=7.2e-10 Score=98.40 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=87.9
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC-------CCCceeeeccCcc--cCC--CCCeEEecccc
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ--FIP--PADAYFFMLFF 213 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~--~~p--~~D~~~l~~vl 213 (287)
++..+|||||||. .+|. |++++.|++ .++++++.+|+.+ +.+ .+|+|++..+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4567999999999 6787 777777753 4689999999866 233 49999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC---------------CC---------C-CCCCCHHHHHHHHHh
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE---------------KE---------D-EDQRTDKEWKTLFLD 268 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~---------------~~---------~-~~~rt~~e~~~ll~~ 268 (287)
|.+++.+ .+|+++++.|+| ||.++|+...... .. . ....+.+++.++|++
T Consensus 123 ~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~ 197 (255)
T PRK11036 123 EWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEE 197 (255)
T ss_pred HhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHH
Confidence 9998764 789999999999 9999886433210 00 0 023578999999999
Q ss_pred CCCcEEEEEecC
Q 043585 269 AGFTCCKITTMF 280 (287)
Q Consensus 269 aGf~~~~~~~~~ 280 (287)
+||+++.+.-+.
T Consensus 198 aGf~~~~~~gi~ 209 (255)
T PRK11036 198 AGWQIMGKTGVR 209 (255)
T ss_pred CCCeEeeeeeEE
Confidence 999998766543
No 20
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.09 E-value=6.9e-10 Score=99.35 Aligned_cols=115 Identities=17% Similarity=0.307 Sum_probs=90.7
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcc-cCC--CCCeEEec
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FIP--PADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~p--~~D~~~l~ 210 (287)
......+|||||||. .+|. |..++.+++ .+++++..+|+.+ +++ .+|+|+..
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 345678999999998 4555 566666653 3689999999877 555 49999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC--------------CCCCHHHHHHHHHhCCCcEEEE
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE--------------DQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~--------------~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
.++|.+++. .++|+++++.|+| ||++++.+.+....... ...+.++|.++|+++||..+++
T Consensus 154 ~v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 154 CVINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CcccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 999988765 4799999999999 99999998876443221 3468899999999999998776
Q ss_pred Ee
Q 043585 277 TT 278 (287)
Q Consensus 277 ~~ 278 (287)
..
T Consensus 229 ~~ 230 (272)
T PRK11873 229 QP 230 (272)
T ss_pred Ee
Confidence 54
No 21
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.07 E-value=1.2e-09 Score=96.88 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=84.8
Q ss_pred hhhcccccccCcceEEEecCcc-----------------cccc-hhhhhcCCCCCCceeeeccCcccCC--CCCeEEecc
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQTENLKYVADDMFQFIP--PADAYFFML 211 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~~~Ri~~~~gd~~~~~p--~~D~~~l~~ 211 (287)
++.+ ......+|||||||. .+|. |.+++.+++ .+++++.+|+.+..+ .+|+|++..
T Consensus 22 l~~l---~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~~ 97 (255)
T PRK14103 22 LARV---GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSNA 97 (255)
T ss_pred HHhC---CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEeh
Confidence 5555 455678999999999 4665 667776654 468999999876323 599999999
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-----------C--------------CCCCCHHHHHHHH
Q 043585 212 FFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-----------D--------------EDQRTDKEWKTLF 266 (287)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-----------~--------------~~~rt~~e~~~ll 266 (287)
+||..++. .++|+++++.|+| ||++++......+.. . ....+.+++.++|
T Consensus 98 ~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 98 ALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred hhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHH
Confidence 99998875 5799999999999 999988532100000 0 0235789999999
Q ss_pred HhCCCcEE
Q 043585 267 LDAGFTCC 274 (287)
Q Consensus 267 ~~aGf~~~ 274 (287)
+++||++.
T Consensus 173 ~~aGf~v~ 180 (255)
T PRK14103 173 TDAGCKVD 180 (255)
T ss_pred HhCCCeEE
Confidence 99999754
No 22
>PRK06922 hypothetical protein; Provisional
Probab=99.07 E-value=2.9e-10 Score=111.22 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=96.0
Q ss_pred CChhhhhccCchHHHHHHHHHHhcccchh--hH-hhhcccccccCcceEEEecCcc-----------------cccc-hh
Q 043585 121 MKHWEIMSQNPRLSQRFNQAMVNDSEMAT--FI-VKDCCRTLIERLGSMVDVGGGN-----------------VLDL-PH 179 (287)
Q Consensus 121 ~~~~e~~~~~~~~~~~f~~aM~~~s~~~~--~~-~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dl-p~ 179 (287)
+.+|+++..+++...+|..+|........ .. ...+ ++.+..+|||||||. .+|+ +.
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~---d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ 453 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIIL---DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN 453 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHh---hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence 46889999999999999988876544321 11 2233 455678999999999 5676 44
Q ss_pred hhhcCCC-----CCCceeeeccCcc-c--CC--CCCeEEeccccccC-----------ChHHHHHHHHHHHHHhcCCCCC
Q 043585 180 AVANTPQ-----TENLKYVADDMFQ-F--IP--PADAYFFMLFFHAF-----------GGEDSLKILKKCREAIAGNGQR 238 (287)
Q Consensus 180 vi~~a~~-----~~Ri~~~~gd~~~-~--~p--~~D~~~l~~vlh~~-----------~d~~~~~iL~~~~~al~~~~~~ 238 (287)
+++.+++ ..++.++.+|..+ + ++ .+|+|+++.++|+| ++++..++|++++++|+| |
T Consensus 454 MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---G 530 (677)
T PRK06922 454 VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---G 530 (677)
T ss_pred HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---C
Confidence 5666653 3567889999876 3 33 39999999999976 457889999999999999 9
Q ss_pred cEEEEEeeccCCCC
Q 043585 239 GKVLIMDIVINEKE 252 (287)
Q Consensus 239 g~lli~e~~~~~~~ 252 (287)
|+++|.|.+.++++
T Consensus 531 GrLII~D~v~~E~~ 544 (677)
T PRK06922 531 GRIIIRDGIMTEDK 544 (677)
T ss_pred cEEEEEeCccCCch
Confidence 99999998877654
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.06 E-value=1.8e-09 Score=98.47 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=85.3
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcC-------CCCCCceeeeccCcc-cC-CCCCeEEeccccc
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANT-------PQTENLKYVADDMFQ-FI-PPADAYFFMLFFH 214 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a-------~~~~Ri~~~~gd~~~-~~-p~~D~~~l~~vlh 214 (287)
....+|||||||. .+|. +.++..+ ....++.+..+++-+ +. ..||+|++..+||
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY 199 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence 4458999999999 4554 2233221 124678888888765 32 2599999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC----C-----------CCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED----E-----------DQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~----~-----------~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
++.+. ...|++++++|+| ||+|++.+.+++.... + ..+|.+++..||+++||+.+++...
T Consensus 200 H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 200 HRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred ccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 99776 5799999999999 9999987776643221 0 3458999999999999999988764
No 24
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.04 E-value=2.1e-09 Score=93.64 Aligned_cols=122 Identities=17% Similarity=0.260 Sum_probs=92.1
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCC--CCCeEEec
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIP--PADAYFFM 210 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p--~~D~~~l~ 210 (287)
..+..+|||||||. ++|. +..++.+++ ..+++++.+|+.+ +.+ .+|+|++.
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 34567999999998 3444 444444432 3578999999987 443 49999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC----------------------------------CCC
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED----------------------------------EDQ 256 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~----------------------------------~~~ 256 (287)
.++|++++. ..+|+++++.|+| ||++++++...++... ...
T Consensus 129 ~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (239)
T PRK00216 129 FGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203 (239)
T ss_pred cccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence 999999875 5789999999999 9999999876654320 023
Q ss_pred CCHHHHHHHHHhCCCcEEEEEecC-Ccccee
Q 043585 257 RTDKEWKTLFLDAGFTCCKITTMF-GLKSLI 286 (287)
Q Consensus 257 rt~~e~~~ll~~aGf~~~~~~~~~-~~~s~i 286 (287)
++.++|.++|+++||+...+.+.. |..+++
T Consensus 204 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~ 234 (239)
T PRK00216 204 PDQEELAAMLEEAGFERVRYRNLTGGIVALH 234 (239)
T ss_pred CCHHHHHHHHHhCCCceeeeeeeecCcEEEE
Confidence 478899999999999999999874 554443
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.03 E-value=1.1e-09 Score=100.39 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=87.5
Q ss_pred CcceEEEecCcc---------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCC--CCCeEEecccccc
Q 043585 162 RLGSMVDVGGGN---------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIP--PADAYFFMLFFHA 215 (287)
Q Consensus 162 ~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~ 215 (287)
...+|||||||. .+|. +..++.++. ..+|+++.+|+.+ +.+ .||+|++..+||+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 456999999999 5665 666666653 2489999999866 433 4999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC------------------CCCC---CCCCHHHHHHHHHhCCCcEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE------------------KEDE---DQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~------------------~~~~---~~rt~~e~~~ll~~aGf~~~ 274 (287)
+.|.+ .+|+.+++.|+| ||.++|.+..... .+.. +.++.+|+.++|+++||+++
T Consensus 211 v~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 211 VANPA--EFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 98874 799999999999 9999987642210 0111 45789999999999999998
Q ss_pred EEEec
Q 043585 275 KITTM 279 (287)
Q Consensus 275 ~~~~~ 279 (287)
++..+
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 88544
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.97 E-value=4.6e-09 Score=91.04 Aligned_cols=152 Identities=11% Similarity=0.126 Sum_probs=100.4
Q ss_pred hhhhhccCchHHHHHHHHHHhcccchhhH-hhhcccccccCcceEEEecCcc---------------cccc-hhhhhcCC
Q 043585 123 HWEIMSQNPRLSQRFNQAMVNDSEMATFI-VKDCCRTLIERLGSMVDVGGGN---------------VLDL-PHAVANTP 185 (287)
Q Consensus 123 ~~e~~~~~~~~~~~f~~aM~~~s~~~~~~-~~~~~~~~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~ 185 (287)
.|+.+...+.....+...|.......... ++.. ..+..+..++||||||. .+|. |++++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~ 94 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWL-PKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMAR 94 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45555555555555666553322222222 3333 10134578999999999 5675 66777665
Q ss_pred C-------CCCceeeeccCcccCCCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeec-----------
Q 043585 186 Q-------TENLKYVADDMFQFIPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIV----------- 247 (287)
Q Consensus 186 ~-------~~Ri~~~~gd~~~~~p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~----------- 247 (287)
+ .+++++..+|+.+....+|+|++..++|++++++...+++++++.+++ + .++.+-..
T Consensus 95 ~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~---~-~~i~~~~~~~~~~~~~~~~ 170 (219)
T TIGR02021 95 NRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE---R-VIFTFAPKTAWLAFLKMIG 170 (219)
T ss_pred HHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC---C-EEEEECCCchHHHHHHHHH
Confidence 3 258999999987743569999999999999988888999999988776 4 33333211
Q ss_pred --cCCCCC-C--CCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 248 --INEKED-E--DQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 248 --~~~~~~-~--~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
.+.... . ..++.+++.++++++||+++.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 171 ELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred hhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 000000 0 3458999999999999999887755
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.94 E-value=7.2e-09 Score=88.39 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=85.3
Q ss_pred ccCcceEEEecCcc---------------cccc-hhhhhcCCC-----CCCceeeeccCcc-cCC-CCCeEEeccccccC
Q 043585 160 IERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-----TENLKYVADDMFQ-FIP-PADAYFFMLFFHAF 216 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~~ 216 (287)
.....+|||+|||. .+|. |.+++.+++ .-++.+..+|+.. +.+ .+|+|++..++|.+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFL 107 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccC
Confidence 34467999999999 6776 666665542 2236777788765 334 59999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-----CCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED-----EDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~-----~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
++++...++++++++|+| ||.++|++....+... +...+.+|+.++|+ +|++....
T Consensus 108 ~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 988889999999999999 9998887765433211 14578999999996 48776655
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.93 E-value=3.5e-09 Score=102.20 Aligned_cols=112 Identities=13% Similarity=0.209 Sum_probs=89.8
Q ss_pred ccCcceEEEecCcc---------------cccc-hhhhhcCCC----CCCceeeeccCcc---cCC--CCCeEEeccccc
Q 043585 160 IERLGSMVDVGGGN---------------VLDL-PHAVANTPQ----TENLKYVADDMFQ---FIP--PADAYFFMLFFH 214 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~---~~p--~~D~~~l~~vlh 214 (287)
..+..++||||||. .+|. |.+++.++. .++++++.+|+.. ++| .+|+|++..++|
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 34567999999999 5665 556655432 4679999999964 344 499999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-------CCCCCCHHHHHHHHHhCCCcEE
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-------DEDQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-------~~~~rt~~e~~~ll~~aGf~~~ 274 (287)
++++++..++|+++++.|+| ||.+++.|....... +..-|+..+|.+++.++||...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 99999889999999999999 999999998776542 1255678999999999999765
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.92 E-value=6.7e-09 Score=89.47 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=89.2
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC----CCCceeeeccCcc-cCC--CCCeEEecccc
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ----TENLKYVADDMFQ-FIP--PADAYFFMLFF 213 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~-~~p--~~D~~~l~~vl 213 (287)
.....+|||+|||. .+|. |.+++.+++ ..+++++.+|+.+ +.+ .+|++++...+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 34678999999998 2343 344444432 4679999999988 444 49999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC----------------------------------CCCCH
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE----------------------------------DQRTD 259 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~----------------------------------~~rt~ 259 (287)
|+.++. ..+|+++++.|+| ||++++++...+..... ...+.
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQ 191 (223)
T ss_pred CCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCH
Confidence 998774 5899999999999 99999998765432100 12377
Q ss_pred HHHHHHHHhCCCcEEEEEecCC
Q 043585 260 KEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 260 ~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
++|.++|+++||+.+.+.+..+
T Consensus 192 ~~~~~~l~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 192 EELAAMLKEAGFEEVRYRSLTF 213 (223)
T ss_pred HHHHHHHHHcCCccceeeeeec
Confidence 8999999999999998888854
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.91 E-value=2.3e-09 Score=82.52 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=64.7
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccC-cc-cCC-CCCeEEecc-cc
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDM-FQ-FIP-PADAYFFML-FF 213 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~-~~-~~p-~~D~~~l~~-vl 213 (287)
..+|||||||. .+|. |.+++.+++ .+||+++.+|+ .. ..+ +||+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 47899999999 5776 777777653 79999999999 33 233 599999999 67
Q ss_pred ccCC-hHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 214 HAFG-GEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 214 h~~~-d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
|.+. .++..++|+++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 7544 36889999999999999 89998865
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.90 E-value=1.5e-09 Score=88.67 Aligned_cols=107 Identities=18% Similarity=0.255 Sum_probs=76.2
Q ss_pred ccCcceEEEecCcc---------------cccc-hhhhhcCCCCCCceeeeccCcc-cCC--CCCeEEeccccccCChHH
Q 043585 160 IERLGSMVDVGGGN---------------VLDL-PHAVANTPQTENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGED 220 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~ 220 (287)
.....+|||||||. .+|. +.+++. ..+.+...+... +.+ .+|+|++..+||+.+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d-- 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD-- 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH--
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc--
Confidence 46678999999998 3333 233332 122222221122 122 5999999999999997
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeeccCC--------CCCC-------CCCCHHHHHHHHHhCCCcEEE
Q 043585 221 SLKILKKCREAIAGNGQRGKVLIMDIVINE--------KEDE-------DQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 221 ~~~iL~~~~~al~~~~~~g~lli~e~~~~~--------~~~~-------~~rt~~e~~~ll~~aGf~~~~ 275 (287)
...+|+++++.|+| ||.+++.+..... .... ..+|.++|+.+++++||++++
T Consensus 94 ~~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKP---GGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEE---EEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCC---CCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 56999999999999 9999999887531 1100 456899999999999999886
No 32
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.87 E-value=5.2e-09 Score=86.47 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=79.7
Q ss_pred ccc-hhhhhcCCC---------CCCceeeeccCcc-cCC--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEE
Q 043585 175 LDL-PHAVANTPQ---------TENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKV 241 (287)
Q Consensus 175 ~Dl-p~vi~~a~~---------~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~l 241 (287)
+|. +++++.|++ ..+|+++.+|+.+ |++ .+|+|++..++|++.|. .+.|+++++.|+| ||++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l 77 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GSRV 77 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---CeEE
Confidence 454 566766632 2479999999988 665 39999999999999765 5899999999999 9999
Q ss_pred EEEeeccCCCCC--------------C-------------------CCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 242 LIMDIVINEKED--------------E-------------------DQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 242 li~e~~~~~~~~--------------~-------------------~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
+|.|...+++.. + .-.+.+|+.++|+++||+.++.....
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 999987543210 0 33589999999999999988877764
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.85 E-value=1.2e-09 Score=89.34 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=79.4
Q ss_pred CcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcc-c--CC-CCCeEEeccc
Q 043585 162 RLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-F--IP-PADAYFFMLF 212 (287)
Q Consensus 162 ~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~--~p-~~D~~~l~~v 212 (287)
+..+|||+|||. .+|. |.+++.++. .++++|..+|+.+ + ++ .||+|+...+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 467999999998 5665 667777653 5689999999999 4 33 5999999999
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC--------------CCC---CHHHHHHHHHhCC
Q 043585 213 FHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE--------------DQR---TDKEWKTLFLDAG 270 (287)
Q Consensus 213 lh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~--------------~~r---t~~e~~~ll~~aG 270 (287)
+|++.+.+ .+|+++++.|++ +|.+++.+....+.-.. ... ..++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence 99999874 889999999999 99999988873221100 111 6677888888887
No 34
>PRK06202 hypothetical protein; Provisional
Probab=98.84 E-value=1.2e-08 Score=89.16 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=81.8
Q ss_pred cCcceEEEecCcc---------------------cccc-hhhhhcCCC---CCCceeeeccCcc-cCC--CCCeEEeccc
Q 043585 161 ERLGSMVDVGGGN---------------------VLDL-PHAVANTPQ---TENLKYVADDMFQ-FIP--PADAYFFMLF 212 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------------v~Dl-p~vi~~a~~---~~Ri~~~~gd~~~-~~p--~~D~~~l~~v 212 (287)
.+..+|||||||. .+|+ |.+++.+++ ..++++..++... +.+ .+|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 4567999999999 2343 566666654 3456666654433 223 4999999999
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC--------------C----CC------CCCCHHHHHHHHHh
Q 043585 213 FHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK--------------E----DE------DQRTDKEWKTLFLD 268 (287)
Q Consensus 213 lh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~--------------~----~~------~~rt~~e~~~ll~~ 268 (287)
||++++++...+|+++++.++ |.+++.|...+.. + .. +-+|.+|+.+++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~ 213 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ 213 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC
Confidence 999999988899999998876 4666666443310 0 00 56799999999999
Q ss_pred CCCcEEEEEec
Q 043585 269 AGFTCCKITTM 279 (287)
Q Consensus 269 aGf~~~~~~~~ 279 (287)
||++...++.
T Consensus 214 -Gf~~~~~~~~ 223 (232)
T PRK06202 214 -GWRVERQWPF 223 (232)
T ss_pred -CCeEEeccce
Confidence 9999888765
No 35
>PRK08317 hypothetical protein; Provisional
Probab=98.82 E-value=2.8e-08 Score=86.28 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=83.1
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC-----CCCceeeeccCcc-cCC--CCCeEEecc
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-----TENLKYVADDMFQ-FIP--PADAYFFML 211 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~-~~p--~~D~~~l~~ 211 (287)
......+|||+|||. .+|+ |..++.+++ ..++++..+|+.. +++ .+|+|++.+
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 456678999999998 2333 333333322 4678999999876 544 499999999
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC-----CCC--------------CCCCHHHHHHHHHhCCCc
Q 043585 212 FFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK-----EDE--------------DQRTDKEWKTLFLDAGFT 272 (287)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~-----~~~--------------~~rt~~e~~~ll~~aGf~ 272 (287)
++|++.+. ..+++++++.|+| ||.+++.+...+.. ... ...+..+|.++|+++||+
T Consensus 96 ~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 170 (241)
T PRK08317 96 VLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLT 170 (241)
T ss_pred hhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCC
Confidence 99999876 4789999999999 99999987532110 000 223467899999999998
Q ss_pred EEEEEe
Q 043585 273 CCKITT 278 (287)
Q Consensus 273 ~~~~~~ 278 (287)
.+++..
T Consensus 171 ~~~~~~ 176 (241)
T PRK08317 171 DIEVEP 176 (241)
T ss_pred ceeEEE
Confidence 765543
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.80 E-value=2.8e-08 Score=89.79 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=86.2
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC-----CCCceeeeccCccc-CC-CCCeEEeccccccCC
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-----TENLKYVADDMFQF-IP-PADAYFFMLFFHAFG 217 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~-~p-~~D~~~l~~vlh~~~ 217 (287)
....+|||||||. .+|. +.+++.+++ .-++++..+|+... .+ .+|+|++..+||..+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 3456999999999 5676 556665542 33688888888763 44 499999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-----CCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED-----EDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~-----~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
+++...+|+++++.|+| ||.++++...-.+... +...+.+|++++++. |++.+..
T Consensus 199 ~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 199 RERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred HHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 88899999999999999 9998887655433321 145789999999965 8887764
No 37
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.80 E-value=2.1e-08 Score=84.84 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=78.7
Q ss_pred cccCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcccCC-CCCeEEecccc
Q 043585 159 LIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP-PADAYFFMLFF 213 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p-~~D~~~l~~vl 213 (287)
+.....+|||||||+ .+|. |..++.+++ .++++++.+|...+.+ .+|++++....
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCc
Confidence 456778999999999 5666 666666653 3579999999865555 49999998765
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
+++ ..+++.+++.|+| ||++++.....+ +.+++.+++++.||+.+++...
T Consensus 108 ~~~-----~~~l~~~~~~Lk~---gG~lv~~~~~~~--------~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 108 GNL-----TAIIDWSLAHLHP---GGRLVLTFILLE--------NLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred cCH-----HHHHHHHHHhcCC---CeEEEEEEecHh--------hHHHHHHHHHHCCCCcceEEEE
Confidence 543 4588999999999 999877543332 3678999999999987665443
No 38
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.78 E-value=5.1e-08 Score=84.76 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=84.4
Q ss_pred ccCcceEEEecCcc---------------cccc-hhhhhcCCC-------CCCceeeeccCcccCCCCCeEEeccccccC
Q 043585 160 IERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIPPADAYFFMLFFHAF 216 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p~~D~~~l~~vlh~~ 216 (287)
..+..+|||||||. .+|+ +.+++.+++ .+++.+..+|+-.....+|+|++..++|+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 34567999999998 5666 666666653 258999999943333359999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc-------------CCCC-C--CCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVI-------------NEKE-D--EDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~-------------~~~~-~--~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
++++...+++++.+.+++ +.++...... +... . ....+.++|.++++++||++.++.+..
T Consensus 141 ~~~~~~~~l~~l~~~~~~----~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 141 PQEDAARMLAHLASLTRG----SLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred CHHHHHHHHHHHHhhcCC----eEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 999999999999887654 4444332110 0000 0 134578999999999999999988764
No 39
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.77 E-value=1e-07 Score=85.22 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=49.1
Q ss_pred CCceeeeccCccc-CC--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 188 ENLKYVADDMFQF-IP--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 188 ~Ri~~~~gd~~~~-~p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
.+|+|..+|+.++ .| .+|+|+++++||++++++..+++++++++|+| ||.|++-.
T Consensus 185 ~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 185 ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 4799999999994 33 49999999999999999999999999999999 99999854
No 40
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.74 E-value=1.5e-07 Score=83.50 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=83.5
Q ss_pred hhhcccccccCcceEEEecCcc-----------------cccc-hhhhhcCCC-CCCceeeeccCcccCC--CCCeEEec
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-TENLKYVADDMFQFIP--PADAYFFM 210 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-~~Ri~~~~gd~~~~~p--~~D~~~l~ 210 (287)
+..+ ...+..+|||||||. .+|. |.+++.+++ .++++++.+|+.+..+ .+|+|++.
T Consensus 24 l~~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 100 (258)
T PRK01683 24 LARV---PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFAN 100 (258)
T ss_pred HhhC---CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEc
Confidence 5555 456778999999999 4565 666776665 5679999999876333 59999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc-CCCC--------------------C---CCCCCHHHHHHHH
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI-NEKE--------------------D---EDQRTDKEWKTLF 266 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~-~~~~--------------------~---~~~rt~~e~~~ll 266 (287)
.++|..+|. .++|++++++|+| ||.+++.-.-. .... . ....+..++.+++
T Consensus 101 ~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l 175 (258)
T PRK01683 101 ASLQWLPDH--LELFPRLVSLLAP---GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDAL 175 (258)
T ss_pred cChhhCCCH--HHHHHHHHHhcCC---CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHH
Confidence 999988765 5899999999999 99988742100 0000 0 0224677899999
Q ss_pred HhCCCcE
Q 043585 267 LDAGFTC 273 (287)
Q Consensus 267 ~~aGf~~ 273 (287)
.++|+.+
T Consensus 176 ~~~g~~v 182 (258)
T PRK01683 176 APAACRV 182 (258)
T ss_pred HhCCCce
Confidence 9999875
No 41
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.72 E-value=1.2e-07 Score=86.37 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=60.3
Q ss_pred cCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCccc--CC-CC-----Ce
Q 043585 161 ERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQF--IP-PA-----DA 206 (287)
Q Consensus 161 ~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~--~p-~~-----D~ 206 (287)
....+|||+|||+ .+|+ +++++.+++ ..+|.++.+|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3457899999999 4555 445555432 23467789999873 33 23 35
Q ss_pred EEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEE
Q 043585 207 YFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLI 243 (287)
Q Consensus 207 ~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli 243 (287)
+++...+|+++++++..+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 6667899999999999999999999999 898885
No 42
>PLN03075 nicotianamine synthase; Provisional
Probab=98.69 E-value=2.9e-08 Score=89.39 Aligned_cols=108 Identities=13% Similarity=0.206 Sum_probs=78.7
Q ss_pred cCcceEEEecCcc-------------------cccc-hhhhhcCCC--------CCCceeeeccCcccC---CCCCeEEe
Q 043585 161 ERLGSMVDVGGGN-------------------VLDL-PHAVANTPQ--------TENLKYVADDMFQFI---PPADAYFF 209 (287)
Q Consensus 161 ~~~~~vlDvGgG~-------------------v~Dl-p~vi~~a~~--------~~Ri~~~~gd~~~~~---p~~D~~~l 209 (287)
.+.++|+|||||. .+|. |+.++.|++ .+||+|..+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3789999999995 5676 666666553 578999999998843 25999999
Q ss_pred ccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCC---HHHHHHHHHhCCCcEEEEEecCC
Q 043585 210 MLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRT---DKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt---~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
. +||+|+.++-.++|+++++.|+| ||.+++--. ..-..-.|. +++.+ ||++..+.+..+
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~~---~G~r~~LYp~v~~~~~~------gf~~~~~~~P~~ 263 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRSA---HGARAFLYPVVDPCDLR------GFEVLSVFHPTD 263 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEecc---cchHhhcCCCCChhhCC------CeEEEEEECCCC
Confidence 9 99999888889999999999999 787776421 111112222 22222 999988776643
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.68 E-value=4.5e-08 Score=87.79 Aligned_cols=122 Identities=12% Similarity=0.161 Sum_probs=84.7
Q ss_pred hhhcccccccCcceEEEecCcc----------------cccc-hhhhhcC-------CCCCCceeeeccCcccCCCCCeE
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN----------------VLDL-PHAVANT-------PQTENLKYVADDMFQFIPPADAY 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a-------~~~~Ri~~~~gd~~~~~p~~D~~ 207 (287)
++.. ...++.+|||||||. .+.+ ++-.+.+ .-.+++++..+|+.+.-+.||.|
T Consensus 55 ~~~~---~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~I 131 (273)
T PF02353_consen 55 CEKL---GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRI 131 (273)
T ss_dssp HTTT---T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEE
T ss_pred HHHh---CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEE
Confidence 5556 678889999999998 3333 2222222 12689999999998733379999
Q ss_pred EeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-------C-C----------CCCCHHHHHHHHHhC
Q 043585 208 FFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-------D-E----------DQRTDKEWKTLFLDA 269 (287)
Q Consensus 208 ~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-------~-~----------~~rt~~e~~~ll~~a 269 (287)
+....+.+...++-..+++++++.|+| ||++++......... . . ..++.+++...++++
T Consensus 132 vSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~ 208 (273)
T PF02353_consen 132 VSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA 208 (273)
T ss_dssp EEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT
T ss_pred EEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC
Confidence 999999999998889999999999999 999998777654431 0 1 567899999999999
Q ss_pred CCcEEEEEec
Q 043585 270 GFTCCKITTM 279 (287)
Q Consensus 270 Gf~~~~~~~~ 279 (287)
||++..+...
T Consensus 209 ~l~v~~~~~~ 218 (273)
T PF02353_consen 209 GLEVEDVENL 218 (273)
T ss_dssp T-EEEEEEE-
T ss_pred CEEEEEEEEc
Confidence 9999988765
No 44
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.65 E-value=2.8e-07 Score=79.72 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=85.7
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCC------------------CCCCceeeeccCcccC----C
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTP------------------QTENLKYVADDMFQFI----P 202 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~------------------~~~Ri~~~~gd~~~~~----p 202 (287)
....++||+|||. .+|+ |..++.+. +..+|++..+|+++.. +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3557999999999 6776 55555421 1457999999999832 3
Q ss_pred CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC---CCCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK---EDEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 203 ~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~---~~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
.+|.|+-+.++|.+++++..+.++++.++|+| ||+++++-...++. +++...+.+|+.++|+. +|.+..+.
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 48999999999999999999999999999999 99877776654322 22367899999999974 45554443
No 45
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.64 E-value=1.9e-07 Score=82.55 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=81.5
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC-CCCceeeeccCcc-cCC--CCCeEEeccccccCChHH
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-TENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGED 220 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~ 220 (287)
....+|||+|||+ .+|+ |.+++.+++ ...+.++.+|+.+ +++ .+|+|+....+|..+|.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~- 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL- 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH-
Confidence 3567999999999 5676 777777765 3446788999877 555 39999999999866654
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC--------------CCCCCCHHHHHHHHHhCCCcE
Q 043585 221 SLKILKKCREAIAGNGQRGKVLIMDIVINEKE--------------DEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 221 ~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~--------------~~~~rt~~e~~~ll~~aGf~~ 273 (287)
..+|+++++.|+| ||.+++.......-. ...-.+.+++.+++...|+..
T Consensus 120 -~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 120 -STALRELYRVVRP---GGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred -HHHHHHHHHHcCC---CeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 5899999999999 999998764432110 014458999999999988864
No 46
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.62 E-value=2.9e-08 Score=73.37 Aligned_cols=72 Identities=21% Similarity=0.392 Sum_probs=55.8
Q ss_pred EEecCcc----------------cccc-hhhhhcCCC---CCCceeeeccCcc-cCC--CCCeEEeccccccCChHHHHH
Q 043585 167 VDVGGGN----------------VLDL-PHAVANTPQ---TENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGEDSLK 223 (287)
Q Consensus 167 lDvGgG~----------------v~Dl-p~vi~~a~~---~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~~~~ 223 (287)
||+|||. .+|. +..++.+++ ..++++..+|+.+ ++| .+|+|++.+++|.+ ++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHHH
Confidence 7899988 4554 445555543 5667799999988 666 39999999999999 44579
Q ss_pred HHHHHHHHhcCCCCCcEEEE
Q 043585 224 ILKKCREAIAGNGQRGKVLI 243 (287)
Q Consensus 224 iL~~~~~al~~~~~~g~lli 243 (287)
+++++++.|+| ||+++|
T Consensus 79 ~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHcCc---CeEEeC
Confidence 99999999999 999876
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.60 E-value=1.1e-07 Score=82.55 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=80.7
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC--CCCceeeeccCcc-cCC--CCCeEEeccccccCCh
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ--TENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGG 218 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~--~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d 218 (287)
...+|||||||. .+|. |..++.++. .++++++.+|+.+ +++ .+|+|+...++|...+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347899999998 3444 444444433 3589999999987 544 4999999999998866
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC---------CCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 219 EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED---------EDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 219 ~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~---------~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
. .++|+++++.|+| ||.+++.+........ ..-++.++|.+++.++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 5799999999999 9999987643322110 1345788999999998 8765443
No 48
>PRK04266 fibrillarin; Provisional
Probab=98.59 E-value=5.3e-07 Score=78.69 Aligned_cols=109 Identities=12% Similarity=0.218 Sum_probs=76.1
Q ss_pred cccCcceEEEecCcc-----------------cccc-hhhhh----cCCCCCCceeeeccCccc-----CC-CCCeEEec
Q 043585 159 LIERLGSMVDVGGGN-----------------VLDL-PHAVA----NTPQTENLKYVADDMFQF-----IP-PADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~----~a~~~~Ri~~~~gd~~~~-----~p-~~D~~~l~ 210 (287)
...+..+|+|+|||+ .+|. |.+++ .+++..+|.++.+|...+ ++ .+|+++
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~-- 146 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY-- 146 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE--
Confidence 456678999999998 3455 43333 344457799999998753 22 388887
Q ss_pred cccccCChH-HHHHHHHHHHHHhcCCCCCcEEEE------EeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 211 LFFHAFGGE-DSLKILKKCREAIAGNGQRGKVLI------MDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 211 ~vlh~~~d~-~~~~iL~~~~~al~~~~~~g~lli------~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
|+.++. +...+|+++++.|+| ||+++| +|...++ . +..++..++++++||+.++.....
T Consensus 147 ---~d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~~----~-~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 147 ---QDVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKDP----K-EIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred ---ECCCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCCH----H-HHHHHHHHHHHHcCCeEEEEEcCC
Confidence 444433 335678999999999 999999 3333222 2 334566799999999999888763
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=2.4e-07 Score=82.70 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=100.1
Q ss_pred hhhcccccccCcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCcccCCCCCeE
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIPPADAY 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p~~D~~ 207 (287)
++.+ .+.++.+|||||||- .+++ ++..+.+++ .++|++.-.|+-+..+.+|-|
T Consensus 65 ~~kl---~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrI 141 (283)
T COG2230 65 LEKL---GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI 141 (283)
T ss_pred HHhc---CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccccee
Confidence 5666 788999999999998 3444 333333321 568999999998854459999
Q ss_pred EeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-C-------------CCCCHHHHHHHHHhCCCcE
Q 043585 208 FFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED-E-------------DQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 208 ~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~-~-------------~~rt~~e~~~ll~~aGf~~ 273 (287)
+..-.++++..+.-...++++++.|+| ||+++++....+.... . ..+|..+..+..+++||.+
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v 218 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVV 218 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEE
Confidence 999999999999999999999999999 9999999988776442 1 7789999999999999999
Q ss_pred EEEEecC
Q 043585 274 CKITTMF 280 (287)
Q Consensus 274 ~~~~~~~ 280 (287)
.......
T Consensus 219 ~~~~~~~ 225 (283)
T COG2230 219 LDVESLR 225 (283)
T ss_pred ehHhhhc
Confidence 8776553
No 50
>PRK05785 hypothetical protein; Provisional
Probab=98.57 E-value=2.7e-07 Score=80.57 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=80.1
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCCCCCCceeeeccCcc-cCC--CCCeEEeccccccCChHHH
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTPQTENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGEDS 221 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~~ 221 (287)
...+|||||||+ .+|. +++++.+++. ..++.+|+.+ |++ .+|+|++...||+++|.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~-- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI-- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH--
Confidence 467999999999 4554 6667766542 3567888877 666 39999999999999876
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC----------------------------------CCCCHHHHHHHHH
Q 043585 222 LKILKKCREAIAGNGQRGKVLIMDIVINEKEDE----------------------------------DQRTDKEWKTLFL 267 (287)
Q Consensus 222 ~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~----------------------------------~~rt~~e~~~ll~ 267 (287)
.+.|+++++.|+| . +.|+|.-.++.... .-.+.+++.++++
T Consensus 127 ~~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~ 201 (226)
T PRK05785 127 EKVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFE 201 (226)
T ss_pred HHHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4799999999998 4 44556544433210 5568899999999
Q ss_pred hCCCcEEEEEecC
Q 043585 268 DAGFTCCKITTMF 280 (287)
Q Consensus 268 ~aGf~~~~~~~~~ 280 (287)
++| +.++.....
T Consensus 202 ~~~-~~~~~~~~~ 213 (226)
T PRK05785 202 KYA-DIKVYEERG 213 (226)
T ss_pred HHh-CceEEEEcc
Confidence 984 666666664
No 51
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.56 E-value=6e-07 Score=80.49 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=59.9
Q ss_pred CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------CCCCHHHHHHHHH
Q 043585 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------DQRTDKEWKTLFL 267 (287)
Q Consensus 203 ~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------~~rt~~e~~~ll~ 267 (287)
.||+|++.-||++-.++ ...|+.++++|++ ||.+++=..+++.+... ..+|..-+..||+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~ 256 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLE 256 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHH
Confidence 49999999999998776 6889999999999 88888766665544321 5569999999999
Q ss_pred hCCCcEEEEEec
Q 043585 268 DAGFTCCKITTM 279 (287)
Q Consensus 268 ~aGf~~~~~~~~ 279 (287)
.+||+.+++...
T Consensus 257 r~gF~~v~~v~~ 268 (315)
T PF08003_consen 257 RAGFKDVRCVDV 268 (315)
T ss_pred HcCCceEEEecC
Confidence 999999998875
No 52
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.55 E-value=4.3e-07 Score=83.01 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=78.2
Q ss_pred CcceEEEecCcc---------------cccc-hhhhhcCCC-----------CCCceeeeccCcccCCCCCeEEeccccc
Q 043585 162 RLGSMVDVGGGN---------------VLDL-PHAVANTPQ-----------TENLKYVADDMFQFIPPADAYFFMLFFH 214 (287)
Q Consensus 162 ~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-----------~~Ri~~~~gd~~~~~p~~D~~~l~~vlh 214 (287)
...+|||||||. .+|. +.+++.+++ ..+++|..+|+.+....||+|++..+||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL~ 223 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVLI 223 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEEE
Confidence 457999999999 5676 556666543 1367888899755323599999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc----------CC--CCCC-----CCCCHHHHHHHHHhCCCcEEEEE
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI----------NE--KEDE-----DQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~----------~~--~~~~-----~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
+++++....+++.+.+ +.+ |+++|...-. .+ .+.. ...+.+++.++|+++||++....
T Consensus 224 H~p~~~~~~ll~~l~~-l~~----g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 224 HYPQDKADGMIAHLAS-LAE----KRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred ecCHHHHHHHHHHHHh-hcC----CEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 9999888888888874 454 4555432100 00 0000 22378999999999999987655
Q ss_pred ec
Q 043585 278 TM 279 (287)
Q Consensus 278 ~~ 279 (287)
-.
T Consensus 299 ~~ 300 (315)
T PLN02585 299 MT 300 (315)
T ss_pred Ee
Confidence 44
No 53
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.54 E-value=5e-07 Score=80.32 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=80.9
Q ss_pred cCcceEEEecCcc---cccc----hh-------------hhhcCCC-------CCCceeeeccCccc------CCCCCeE
Q 043585 161 ERLGSMVDVGGGN---VLDL----PH-------------AVANTPQ-------TENLKYVADDMFQF------IPPADAY 207 (287)
Q Consensus 161 ~~~~~vlDvGgG~---v~Dl----p~-------------vi~~a~~-------~~Ri~~~~gd~~~~------~p~~D~~ 207 (287)
....+||||.||+ ++|. |. -++..++ .+-++|+.+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 3578999999999 4443 21 2222221 44459999999994 2458999
Q ss_pred EeccccccCChHHHHH-HHHHHHHHhcCCCCCcEEEEEeeccCCCCC-------------C---CCCCHHHHHHHHHhCC
Q 043585 208 FFMLFFHAFGGEDSLK-ILKKCREAIAGNGQRGKVLIMDIVINEKED-------------E---DQRTDKEWKTLFLDAG 270 (287)
Q Consensus 208 ~l~~vlh~~~d~~~~~-iL~~~~~al~~~~~~g~lli~e~~~~~~~~-------------~---~~rt~~e~~~ll~~aG 270 (287)
+.+-+.-.|+|.+.++ .|+.+++++.| ||.++--..-..+.-. + +.||.+|..+|++.||
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC
Confidence 9999999999977555 69999999999 7876654322222211 1 8899999999999999
Q ss_pred CcEEE
Q 043585 271 FTCCK 275 (287)
Q Consensus 271 f~~~~ 275 (287)
|+-++
T Consensus 291 F~K~~ 295 (311)
T PF12147_consen 291 FEKID 295 (311)
T ss_pred Cchhh
Confidence 97543
No 54
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.54 E-value=7.4e-07 Score=74.78 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=82.5
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC-----CCCceeeeccCcccCC-CCCeEEeccccccCCh
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-----TENLKYVADDMFQFIP-PADAYFFMLFFHAFGG 218 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~~p-~~D~~~l~~vlh~~~d 218 (287)
....+|+|+|||. .+|+ |..++.+++ .-+++++.+|.++..+ .+|+|++.-.+|..++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence 3446899999999 4665 666665543 3468889999887433 5999999988876654
Q ss_pred HH-------------------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 219 ED-------------------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 219 ~~-------------------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
+. ..++|+++.+.|+| ||++++++.... ...++.++++++||....+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEEEe
Confidence 21 35789999999999 999999875433 3679999999999998877665
Q ss_pred C
Q 043585 280 F 280 (287)
Q Consensus 280 ~ 280 (287)
.
T Consensus 167 ~ 167 (179)
T TIGR00537 167 G 167 (179)
T ss_pred e
Confidence 3
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.53 E-value=6.2e-07 Score=84.25 Aligned_cols=118 Identities=11% Similarity=0.060 Sum_probs=88.6
Q ss_pred cccCcceEEEecCcc----------------cccc-hhhhhcCCC---CCCceeeeccCcccCCCCCeEEeccccccCCh
Q 043585 159 LIERLGSMVDVGGGN----------------VLDL-PHAVANTPQ---TENLKYVADDMFQFIPPADAYFFMLFFHAFGG 218 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~---~~Ri~~~~gd~~~~~p~~D~~~l~~vlh~~~d 218 (287)
......+|||||||. .+|+ |+.++.+++ ...+++..+|+.+....+|+|+...++|+.++
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 455678999999998 4665 556665543 23478888887653235999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC---C----------CCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 219 EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED---E----------DQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 219 ~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~---~----------~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
++...+++++++.|+| ||++++.+...+.... . ..++.+++.+.++ .||.+..+....
T Consensus 244 ~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~ 314 (383)
T PRK11705 244 KNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFG 314 (383)
T ss_pred HHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecCh
Confidence 8778999999999999 9999998765443221 1 3568899888866 589988877653
No 56
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.51 E-value=1e-07 Score=80.43 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=80.6
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC----CCCceeeeccCcccCC--CCCeEEeccccccCCh
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ----TENLKYVADDMFQFIP--PADAYFFMLFFHAFGG 218 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~~~p--~~D~~~l~~vlh~~~d 218 (287)
....+++++|||. .+|. |..++.|++ .++|+++.+|+-...| .||+|+++-|+|++++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSS
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCC
Confidence 4567899999999 6777 777887764 6899999999988656 4999999999999986
Q ss_pred -HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC--CCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 219 -EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED--EDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 219 -~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~--~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
++...+++++.++|+| ||.+++..+.- +... ...-..+...++|.+. |..++....
T Consensus 122 ~~~L~~~l~~l~~~L~p---gG~LV~g~~rd-~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAP---GGHLVFGHARD-ANCRRWGHAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEEEEE-H-HHHHHTT-S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEEEecC-CcccccCcccchHHHHHHHHHH-hhheeEEEE
Confidence 6788999999999999 99999977632 1110 1334677788888887 766666555
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.50 E-value=6.1e-08 Score=73.08 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=42.1
Q ss_pred EEecCcc-----------------cccc-hhhhhcCCC------C---CCceeeeccCcccCC--CCCeEEeccccccCC
Q 043585 167 VDVGGGN-----------------VLDL-PHAVANTPQ------T---ENLKYVADDMFQFIP--PADAYFFMLFFHAFG 217 (287)
Q Consensus 167 lDvGgG~-----------------v~Dl-p~vi~~a~~------~---~Ri~~~~gd~~~~~p--~~D~~~l~~vlh~~~ 217 (287)
||||||. .+|. |.+++.+++ . .++++...|.+...+ .||+|++.++||++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999 5665 667777764 1 234555555555333 599999999999994
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEE
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKV 241 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~l 241 (287)
+...+|+++++.|+| ||+|
T Consensus 81 --~~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred --hHHHHHHHHHHHcCC---CCCC
Confidence 456999999999999 8875
No 58
>PTZ00146 fibrillarin; Provisional
Probab=98.48 E-value=1.6e-06 Score=78.03 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=76.3
Q ss_pred cccCcceEEEecCcc------------------cccch-----hhhhcCCCCCCceeeeccCcccC------CCCCeEEe
Q 043585 159 LIERLGSMVDVGGGN------------------VLDLP-----HAVANTPQTENLKYVADDMFQFI------PPADAYFF 209 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dlp-----~vi~~a~~~~Ri~~~~gd~~~~~------p~~D~~~l 209 (287)
.+....+|||+|||+ .+|.. .+++.++...+|.++.+|+..+. +.+|+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 456678999999999 34542 25555555678999999987642 24899977
Q ss_pred ccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE-eeccCCCCC-CCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 210 MLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM-DIVINEKED-EDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~-e~~~~~~~~-~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
... ..++...++.++++.|+| +|+++|. ....-+... +.++-.+|. ++|+++||+.+++..++
T Consensus 209 Dva----~pdq~~il~~na~r~LKp---GG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 209 DVA----QPDQARIVALNAQYFLKN---GGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPKEQLTLE 273 (293)
T ss_pred eCC----CcchHHHHHHHHHHhccC---CCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceEEEEecC
Confidence 653 233455677789999999 9999983 221111111 122212344 88999999998888774
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.47 E-value=7.7e-07 Score=77.68 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=80.3
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC-----CCCceeeeccCcc-c--CC-CCCeEEecccccc
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-----TENLKYVADDMFQ-F--IP-PADAYFFMLFFHA 215 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~-~--~p-~~D~~~l~~vlh~ 215 (287)
.+..+|||||||. .+|. +..++.+++ ..++++..+|+.+ + .+ .||+|++.+++++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 3567899999998 3454 344444432 3357787777765 2 12 4999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC-------------------CC--CCCCCHHHHHHHHHhCCCcEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK-------------------ED--EDQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~-------------------~~--~~~rt~~e~~~ll~~aGf~~~ 274 (287)
.++. ..+|+++.+.|+| ||++++........ .. ....+.++|.++++++||+++
T Consensus 127 ~~~~--~~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 127 VPDP--ASFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred cCCH--HHHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 8775 4789999999999 99988765321100 00 033478999999999999988
Q ss_pred EEEe
Q 043585 275 KITT 278 (287)
Q Consensus 275 ~~~~ 278 (287)
....
T Consensus 202 ~~~~ 205 (233)
T PRK05134 202 DITG 205 (233)
T ss_pred eeee
Confidence 7764
No 60
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.46 E-value=1.4e-06 Score=75.63 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=85.0
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCC------------------CCCCceeeeccCcccC----C
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTP------------------QTENLKYVADDMFQFI----P 202 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~------------------~~~Ri~~~~gd~~~~~----p 202 (287)
....+|||+|||. .+|. |..++.+. ...+|++..+|+++.. +
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3457999999999 5776 44444321 1468999999999842 2
Q ss_pred CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC---CCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK---EDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 203 ~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~---~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
.+|.|+-+-++|.++++...+.++++.++|+| ||+++++....++. +++...|.+|+.+++... |.+..+..
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~-~~i~~~~~ 190 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGC-FEIELLER 190 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCC-ceEEEeee
Confidence 48999999999999999999999999999999 88766544444322 223677999999999643 66655544
No 61
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.46 E-value=4.4e-07 Score=77.97 Aligned_cols=86 Identities=10% Similarity=0.159 Sum_probs=69.3
Q ss_pred ccCcceEEEecCcc-----------------cccc-hhhhhcCCC-CCCceeeeccCcccCC--CCCeEEeccccccCCh
Q 043585 160 IERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-TENLKYVADDMFQFIP--PADAYFFMLFFHAFGG 218 (287)
Q Consensus 160 ~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-~~Ri~~~~gd~~~~~p--~~D~~~l~~vlh~~~d 218 (287)
..+..+|||||||+ .+|. |++++.|++ ..++++..+|+.++++ .+|+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567899999999 4665 667877765 5678999999988655 4999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC
Q 043585 219 EDSLKILKKCREAIAGNGQRGKVLIMDIVINE 250 (287)
Q Consensus 219 ~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~ 250 (287)
++..++++++++.++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 888999999988853 588888875543
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.43 E-value=1.3e-06 Score=75.65 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=81.1
Q ss_pred CcceEEEecCcc---------------cccc-hhhhhcCCC-----C-CCceeeeccCcc-cC--C-CCCeEEecccccc
Q 043585 162 RLGSMVDVGGGN---------------VLDL-PHAVANTPQ-----T-ENLKYVADDMFQ-FI--P-PADAYFFMLFFHA 215 (287)
Q Consensus 162 ~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-----~-~Ri~~~~gd~~~-~~--p-~~D~~~l~~vlh~ 215 (287)
...+|||+|||. .+|+ +.+++.+++ . .++++..+|+.+ +. + .+|+|++.+++|.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 467999999998 4554 445555442 2 258888888765 22 2 4999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC------------------CCCC---CCCCHHHHHHHHHhCCCcEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE------------------KEDE---DQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~------------------~~~~---~~rt~~e~~~ll~~aGf~~~ 274 (287)
..+.+ .+|+++++.|++ ||.+++.+...+. .... ...+..++.++++++||+++
T Consensus 125 ~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~ 199 (224)
T TIGR01983 125 VPDPQ--AFIRACAQLLKP---GGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVK 199 (224)
T ss_pred CCCHH--HHHHHHHHhcCC---CcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeee
Confidence 98764 799999999999 9998886542110 0000 23478899999999999998
Q ss_pred EEEe
Q 043585 275 KITT 278 (287)
Q Consensus 275 ~~~~ 278 (287)
++..
T Consensus 200 ~~~~ 203 (224)
T TIGR01983 200 DVKG 203 (224)
T ss_pred eeee
Confidence 7763
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.41 E-value=2.4e-07 Score=80.99 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=86.0
Q ss_pred cceEEEecCcc---------------cccc-hhhhhcCCC--------CC----CceeeeccCcccCCCCCeEEeccccc
Q 043585 163 LGSMVDVGGGN---------------VLDL-PHAVANTPQ--------TE----NLKYVADDMFQFIPPADAYFFMLFFH 214 (287)
Q Consensus 163 ~~~vlDvGgG~---------------v~Dl-p~vi~~a~~--------~~----Ri~~~~gd~~~~~p~~D~~~l~~vlh 214 (287)
..+|||||||. .+|. +..++.|++ .. |+++...|.-...+.||+|+++.|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle 169 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE 169 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence 46799999998 6776 667777763 22 57888888776556699999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC--C-------------------CCCCHHHHHHHHHhCCCcE
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED--E-------------------DQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~--~-------------------~~rt~~e~~~ll~~aGf~~ 273 (287)
+..|. ..+++.+.+.|+| +|+++|.+....-..- . +-.+++|...+++.+|+.+
T Consensus 170 HV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 170 HVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 99776 4899999999999 8999997754332110 0 5568999999999999887
Q ss_pred EEEEe
Q 043585 274 CKITT 278 (287)
Q Consensus 274 ~~~~~ 278 (287)
..+..
T Consensus 245 ~~v~G 249 (282)
T KOG1270|consen 245 NDVVG 249 (282)
T ss_pred hhhhc
Confidence 66543
No 64
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.39 E-value=2e-06 Score=73.10 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=73.6
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCCCCCceeeeccCcc---cCC--CCCeEEeccccccCCh
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQTENLKYVADDMFQ---FIP--PADAYFFMLFFHAFGG 218 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~~~Ri~~~~gd~~~---~~p--~~D~~~l~~vlh~~~d 218 (287)
....+|||||||. .+|. ++.++.++ ..+++++.+|+.+ +++ .+|+|++.++||+..+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 4557999999999 2333 33343333 2468888898865 233 4999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEee---------------ccCCCC----------CCCCCCHHHHHHHHHhCCCcE
Q 043585 219 EDSLKILKKCREAIAGNGQRGKVLIMDI---------------VINEKE----------DEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 219 ~~~~~iL~~~~~al~~~~~~g~lli~e~---------------~~~~~~----------~~~~rt~~e~~~ll~~aGf~~ 273 (287)
. .++|+++.+.+++ +++.-+ ..+... ..+..|.+++.++++++||++
T Consensus 91 ~--~~~l~e~~r~~~~------~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v 162 (194)
T TIGR02081 91 P--EEILDEMLRVGRH------AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRI 162 (194)
T ss_pred H--HHHHHHHHHhCCe------EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEE
Confidence 4 4678877665443 322200 011000 014678999999999999999
Q ss_pred EEEEecC
Q 043585 274 CKITTMF 280 (287)
Q Consensus 274 ~~~~~~~ 280 (287)
++....+
T Consensus 163 ~~~~~~~ 169 (194)
T TIGR02081 163 LDRAAFD 169 (194)
T ss_pred EEEEEec
Confidence 8877664
No 65
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.38 E-value=2.8e-07 Score=79.84 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=84.7
Q ss_pred CcceEEEecCcc---------------cccc-hhhhhcCCC---CC--CceeeeccCcc-cC--CCCCeEEeccccccCC
Q 043585 162 RLGSMVDVGGGN---------------VLDL-PHAVANTPQ---TE--NLKYVADDMFQ-FI--PPADAYFFMLFFHAFG 217 (287)
Q Consensus 162 ~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~---~~--Ri~~~~gd~~~-~~--p~~D~~~l~~vlh~~~ 217 (287)
...+|||||||- ..|. ++.|+.|+. .+ .|++.+....+ .. .+||+|++..||++.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 467999999998 6776 667777763 22 24466665555 22 3599999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------------CCCCHHHHHHHHHhCCCcEEEE
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------------DQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------------~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
|++ .+++.|.+-++| ||.+++..........- +-..++|...++..+|+++...
T Consensus 139 dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~ 213 (243)
T COG2227 139 DPE--SFLRACAKLVKP---GGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDR 213 (243)
T ss_pred CHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEee
Confidence 987 499999999999 99998877654321100 5557899999999999998877
Q ss_pred Eec
Q 043585 277 TTM 279 (287)
Q Consensus 277 ~~~ 279 (287)
..+
T Consensus 214 ~g~ 216 (243)
T COG2227 214 KGL 216 (243)
T ss_pred cce
Confidence 654
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.35 E-value=1.8e-07 Score=70.95 Aligned_cols=71 Identities=18% Similarity=0.333 Sum_probs=54.4
Q ss_pred EEEecCcc--------------------cccc-hhhhhcCCC-----CCCceeeeccCcc-cCC--CCCeEEec-ccccc
Q 043585 166 MVDVGGGN--------------------VLDL-PHAVANTPQ-----TENLKYVADDMFQ-FIP--PADAYFFM-LFFHA 215 (287)
Q Consensus 166 vlDvGgG~--------------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~-~~p--~~D~~~l~-~vlh~ 215 (287)
|||+|||+ .+|+ +++++.+++ ..+++++.+|+.+ +++ .+|+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 68999999 3443 455555543 3589999999988 433 59999995 55999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCc
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRG 239 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g 239 (287)
+++++..++|+++++.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
No 67
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.34 E-value=9.5e-07 Score=74.91 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=75.0
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCC-----CCCCceeeeccCcc-cCC-CCCeEEecccccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTP-----QTENLKYVADDMFQ-FIP-PADAYFFMLFFHA 215 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~-----~~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~ 215 (287)
......++||+|||. .+|. +..++.++ +.-.|+....|+.+ .++ .||+|+...|+|.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMF 106 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEecc
Confidence 344578999999999 4555 33343332 13348889999887 455 4999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC-CCC----CCCCHHHHHHHHHhCCCcEEEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK-EDE----DQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~-~~~----~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
...+...+|++++.++++| ||.++++..+-.++ +.+ ......|+...++ ||++.+.
T Consensus 107 L~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 9999999999999999999 88877765543222 111 4556778888886 5877553
No 68
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.33 E-value=1.8e-06 Score=72.89 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=72.5
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcc-cC-CCCCeEEeccccccC
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FI-PPADAYFFMLFFHAF 216 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~-p~~D~~~l~~vlh~~ 216 (287)
..+|+|||||. .+|. +.+++.+++ .++++++.+|+.+ +. +.+|+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999 4554 344444331 3579999999977 22 2599988765 5543
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHh---CCCcEEEEEecCC
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLD---AGFTCCKITTMFG 281 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~---aGf~~~~~~~~~~ 281 (287)
..+++.+++.|+| ||++++.. ......++..+.+. .||+.++..+..+
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~---------~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYK---------GKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEc---------CCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 3478888999999 99998763 22346677777776 7999998887755
No 69
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.31 E-value=3.3e-06 Score=71.97 Aligned_cols=125 Identities=18% Similarity=0.287 Sum_probs=93.6
Q ss_pred hhhcccccccCcceEEEecCcc-----------------cccc-hhhhhcCCC-CCCceeeeccCcccCC--CCCeEEec
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-TENLKYVADDMFQFIP--PADAYFFM 210 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-~~Ri~~~~gd~~~~~p--~~D~~~l~ 210 (287)
+..+ ......+|+|+|||. .+|- |++++.|++ ...++|..+|.-+-.| ..|+++..
T Consensus 23 la~V---p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaN 99 (257)
T COG4106 23 LARV---PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFAN 99 (257)
T ss_pred HhhC---CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhh
Confidence 5556 467789999999998 6775 889998875 7889999999998555 59999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------------------CCCCHHHHH
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------------------DQRTDKEWK 263 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------------------~~rt~~e~~ 263 (287)
-+||-.+|. .++|.++...|.| ||.|-|. +|++-.. ...+...|-
T Consensus 100 AvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 100 AVLQWLPDH--PELLPRLVSQLAP---GGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred hhhhhcccc--HHHHHHHHHhhCC---CceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 999988887 5899999999999 8887775 3333211 334778888
Q ss_pred HHHHhCCCcEE-----EEEecCCccceeC
Q 043585 264 TLFLDAGFTCC-----KITTMFGLKSLIK 287 (287)
Q Consensus 264 ~ll~~aGf~~~-----~~~~~~~~~s~ie 287 (287)
++|...+=++. =.++++|..+|||
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~l~~a~aIvd 200 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQLPGADAIVD 200 (257)
T ss_pred HHhCcccceeeeeeeeccccCCCccchhh
Confidence 88887754432 1122356666665
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.28 E-value=5.1e-06 Score=73.60 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=74.6
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCcccCCCCCeEEeccccccC
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIPPADAYFFMLFFHAF 216 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p~~D~~~l~~vlh~~ 216 (287)
....+|+|||||+ .+|. |..++.+++ .+++.+..+|. .||+|+..- .
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani-~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANI-L--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcC-c---
Confidence 4678999999999 4565 556665553 23344333332 589987642 2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCCcccee
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFGLKSLI 286 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~s~i 286 (287)
.+....+++++.+.|+| ||++++...... ..+++.+.+++.||++.++....++.+++
T Consensus 189 -~~~~~~l~~~~~~~Lkp---gG~lilsgi~~~--------~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 189 -ANPLLELAPDLARLLKP---GGRLILSGILEE--------QADEVLEAYEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred -HHHHHHHHHHHHHhcCC---CcEEEEEECcHh--------hHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 23356789999999999 999998765443 26788999999999999888777766553
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.22 E-value=5.6e-06 Score=72.75 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=75.0
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcccCC--CCCeEEeccc---
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP--PADAYFFMLF--- 212 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p--~~D~~~l~~v--- 212 (287)
...+|+|+|||. .+|. +..++.++. .++++++.+|++++++ .+|+|++.-.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446899999999 4554 555555542 3479999999988654 4999987432
Q ss_pred ---cccCChHH------------------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCC
Q 043585 213 ---FHAFGGED------------------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 213 ---lh~~~d~~------------------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf 271 (287)
+|.+..+. ...+++++.+.|+| ||++++.- .....+++.++|+++||
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~---------~~~~~~~~~~~l~~~gf 234 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEI---------GYDQGEAVRALFEAAGF 234 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEE---------CccHHHHHHHHHHhCCC
Confidence 23332221 24789999999999 89887742 12346789999999999
Q ss_pred cEEEEEec
Q 043585 272 TCCKITTM 279 (287)
Q Consensus 272 ~~~~~~~~ 279 (287)
+.++++.-
T Consensus 235 ~~v~~~~d 242 (251)
T TIGR03534 235 ADVETRKD 242 (251)
T ss_pred CceEEEeC
Confidence 98877654
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=98.18 E-value=1.8e-05 Score=66.28 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=76.8
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC-------CCC-ceeeeccCcccCC--CCCeEEeccccc
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-------TEN-LKYVADDMFQFIP--PADAYFFMLFFH 214 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-------~~R-i~~~~gd~~~~~p--~~D~~~l~~vlh 214 (287)
.+..++||+|||. .+|. |.+++.+++ .++ +.++.+|+.++++ .+|+|++...++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 4567899999998 4566 566666542 233 8899999988655 499998765443
Q ss_pred cCC-------------------hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEE
Q 043585 215 AFG-------------------GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 215 ~~~-------------------d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 275 (287)
... ......+++++.+.|+| ||.++++..-. ...+++.++++++||++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~--------~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL--------TGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc--------CCHHHHHHHHHHCCCeeee
Confidence 211 22345689999999999 89888764321 2356889999999999876
Q ss_pred EEec
Q 043585 276 ITTM 279 (287)
Q Consensus 276 ~~~~ 279 (287)
+...
T Consensus 171 ~~~~ 174 (188)
T PRK14968 171 VAEE 174 (188)
T ss_pred eeec
Confidence 6544
No 73
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.18 E-value=1.3e-05 Score=67.89 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=74.5
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcc-cCC-CCCeEEeccccc
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FIP-PADAYFFMLFFH 214 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh 214 (287)
+...+|||||||. .+|. +.+++.+++ .++++++.+|+.+ +.. .||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3468999999999 4555 555555542 3459999999877 223 5999998652
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
.....+++.+++.|+| ||++++++.. ....++.++.+.-|+++.+++-.
T Consensus 122 ----~~~~~~l~~~~~~Lkp---GG~lv~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 122 ----ASLSDLVELCLPLLKP---GGRFLALKGR---------DPEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred ----cCHHHHHHHHHHhcCC---CeEEEEEeCC---------ChHHHHHHHHHhcCceEeeeEEE
Confidence 2245799999999999 9999988522 23667888888889998877754
No 74
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.15 E-value=2.1e-05 Score=68.53 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=86.8
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCC------------------CCCCceeeeccCcccC--C--
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTP------------------QTENLKYVADDMFQFI--P-- 202 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~------------------~~~Ri~~~~gd~~~~~--p-- 202 (287)
....+|++.|||. .+|+ |..|+.+. ...+|++..+|+|+.. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 3457999999999 6776 44444420 1568999999999932 1
Q ss_pred --CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC--CCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 203 --PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE--KEDEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 203 --~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~--~~~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
.+|+|+=+-+||.++++...+..+++.+.|+| ||+++++..-.+. .+++..-+.+|+++++... |.+..+.
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~-~~i~~l~ 196 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAK-IKFELID 196 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCC-ceEEEee
Confidence 48999999999999999999999999999999 9999988765433 2344667899999999753 5554444
No 75
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.08 E-value=1.1e-05 Score=70.11 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=83.6
Q ss_pred ccCcceEEEecCcc---------------cccc-hhhhhcCC------------------CCCCceeeeccCcccCC---
Q 043585 160 IERLGSMVDVGGGN---------------VLDL-PHAVANTP------------------QTENLKYVADDMFQFIP--- 202 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~------------------~~~Ri~~~~gd~~~~~p--- 202 (287)
.....+|++.|||. .+|+ |..|+.+. ..++|++..||||+--+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 34567999999999 6776 44454430 15689999999999322
Q ss_pred -CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC---CCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 203 -PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK---EDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 203 -~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~---~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
.+|+|+=+-.||-.+++...+..+++++.|+| ||+++++....+.. +++..-+.+|+.+++. .+|++.....
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 48999999999999999999999999999999 99955544433322 3346778999999999 8898876664
No 76
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.08 E-value=1.9e-05 Score=67.34 Aligned_cols=150 Identities=12% Similarity=0.165 Sum_probs=89.1
Q ss_pred HHHHHHHHhHhcCCCcccccccCCChhhhhccCchHHHHHHHHHH----hcccchhhH-hhhcccccccCcceEEEecCc
Q 043585 98 FLLHFISKLFKGNDVSVWETVRGMKHWEIMSQNPRLSQRFNQAMV----NDSEMATFI-VKDCCRTLIERLGSMVDVGGG 172 (287)
Q Consensus 98 ~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~aM~----~~s~~~~~~-~~~~~~~~~~~~~~vlDvGgG 172 (287)
..+..|.|.|-+.. + ...++.+.++|+.-..|+++-+ .+....... ++.+ . ..++...|.|.|||
T Consensus 13 srFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l-~-~~~~~~viaD~GCG 82 (219)
T PF05148_consen 13 SRFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWL-K-KRPKSLVIADFGCG 82 (219)
T ss_dssp HHHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHH-C-TS-TTS-EEEES-T
T ss_pred CchHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH-H-hcCCCEEEEECCCc
Confidence 44556777776643 1 2345566778876655555444 333222223 3333 2 23445789999999
Q ss_pred c--------------cccchhhhhcCCCCCCceeeeccCcc-cCCC--CCeEEeccccccCChHHHHHHHHHHHHHhcCC
Q 043585 173 N--------------VLDLPHAVANTPQTENLKYVADDMFQ-FIPP--ADAYFFMLFFHAFGGEDSLKILKKCREAIAGN 235 (287)
Q Consensus 173 ~--------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~-~~p~--~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~ 235 (287)
. -|||-.. .+ .+.+.|+-. |++. .|+++++--|..-+ ....|+.+.+.|++
T Consensus 83 dA~la~~~~~~~~V~SfDLva~------n~--~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~- 150 (219)
T PF05148_consen 83 DAKLAKAVPNKHKVHSFDLVAP------NP--RVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKP- 150 (219)
T ss_dssp T-HHHHH--S---EEEEESS-S------ST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE-
T ss_pred hHHHHHhcccCceEEEeeccCC------CC--CEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheecc-
Confidence 9 2343221 22 466789977 7663 89999988886432 24589999999999
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 236 GQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 236 ~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
||.|.|.|... +--+.+++.+.++..||+....-
T Consensus 151 --~G~L~IAEV~S------Rf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 151 --GGILKIAEVKS------RFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp --EEEEEEEEEGG------G-S-HHHHHHHHHCTTEEEEEEE
T ss_pred --CcEEEEEEecc------cCcCHHHHHHHHHHCCCeEEecc
Confidence 99999998543 23368999999999999988754
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.04 E-value=1e-05 Score=75.63 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=62.4
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC---------CCCceeeeccCcccCC--CCCeEEecccc
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ---------TENLKYVADDMFQFIP--PADAYFFMLFF 213 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~---------~~Ri~~~~gd~~~~~p--~~D~~~l~~vl 213 (287)
..+|||+|||+ .+|. +.+++.+++ .+++++..+|.++..+ .||+|++.-.+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 36999999999 4565 455555542 2478999999988553 49999996444
Q ss_pred ---ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 214 ---HAFGGEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 214 ---h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
|..+++.+.++++.+++.|+| ||+++|+-
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 457778888999999999999 99999884
No 78
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.01 E-value=3.6e-05 Score=65.63 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=69.5
Q ss_pred CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-CC-----------------CCCCHHHHHH
Q 043585 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-DE-----------------DQRTDKEWKT 264 (287)
Q Consensus 203 ~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-~~-----------------~~rt~~e~~~ 264 (287)
.+|+|+..+++|.-+-+.+..+++.+.++|++ ||.|++.-+..-+.. .+ ..|..++..+
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~ 178 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEA 178 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHH
Confidence 48999999999999999999999999999999 999999887754322 11 7789999999
Q ss_pred HHHhCCCcEEEEEecCC-cccee
Q 043585 265 LFLDAGFTCCKITTMFG-LKSLI 286 (287)
Q Consensus 265 ll~~aGf~~~~~~~~~~-~~s~i 286 (287)
+.+++||+.++++..|. ...||
T Consensus 179 lA~~~GL~l~~~~~MPANN~~Lv 201 (204)
T PF06080_consen 179 LAAAHGLELEEDIDMPANNLLLV 201 (204)
T ss_pred HHHHCCCccCcccccCCCCeEEE
Confidence 99999999999999874 55554
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.01 E-value=1.5e-05 Score=72.07 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=72.2
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCcccCC-CCCeEEeccccccC
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIP-PADAYFFMLFFHAF 216 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p-~~D~~~l~~vlh~~ 216 (287)
...+|||||||+ .+|. |..++.+++ .+++.+..++.....+ +||+|++.-..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~--- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA--- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH---
Confidence 458999999999 4665 455555543 4567777666433223 59999875432
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
+....+++++++.|+| ||.+++...... ..+++.+.+++. |++.++....+
T Consensus 236 --~~l~~ll~~~~~~Lkp---gG~li~sgi~~~--------~~~~v~~~~~~~-f~~~~~~~~~~ 286 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKP---GGWLILSGILET--------QAQSVCDAYEQG-FTVVEIRQREE 286 (288)
T ss_pred --HHHHHHHHHHHHHcCC---CcEEEEEeCcHh--------HHHHHHHHHHcc-CceeeEeccCC
Confidence 3346799999999999 999988764332 267888888877 99988766543
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.96 E-value=1.3e-05 Score=68.70 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=70.9
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccC-cc-c--CC--CCCeEEecc
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDM-FQ-F--IP--PADAYFFML 211 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~-~~-~--~p--~~D~~~l~~ 211 (287)
...+|||||||. .+|. |+.++.+++ .++++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999 4444 455555542 36899999998 33 3 43 399998865
Q ss_pred ccccCC------hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEE
Q 043585 212 FFHAFG------GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 212 vlh~~~------d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 274 (287)
..+... ......+|+++++.|+| ||.+++... ......++.+.+++.||+..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~~--------~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFATD--------WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEcC--------CHHHHHHHHHHHHhCccccc
Confidence 432111 11246799999999999 999998642 22336688888999998765
No 81
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.88 E-value=5.9e-05 Score=64.33 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=70.9
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCccc---C-CCCCeEE
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQF---I-PPADAYF 208 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~---~-p~~D~~~ 208 (287)
......+++|+|||. .+|. |..++.+++ .++++++.+|+.+. . +.+|+|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 456678999999998 4555 555555442 46899999998762 2 3599998
Q ss_pred eccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcE
Q 043585 209 FMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 209 l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 273 (287)
+.. ..++...+|+.+.+.|+| ||++++ +....+ +..+....|++.||..
T Consensus 117 ~~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~-~~~~~~-------~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 117 IGG-----GSEKLKEIISASWEIIKK---GGRIVI-DAILLE-------TVNNALSALENIGFNL 165 (198)
T ss_pred ECC-----CcccHHHHHHHHHHHcCC---CcEEEE-EeecHH-------HHHHHHHHHHHcCCCe
Confidence 843 223456799999999999 999886 433222 3678888999999943
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=97.87 E-value=0.00012 Score=63.56 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=70.2
Q ss_pred ccCcceEEEecCcc----------------cccc-hhhhhcCCC-----CCCceeeeccCcccCC--CCCeEEecccccc
Q 043585 160 IERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQFIP--PADAYFFMLFFHA 215 (287)
Q Consensus 160 ~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~~p--~~D~~~l~~vlh~ 215 (287)
.....+|||+|||. .+|. |..++.+++ .-+++++.+|+.+.++ .+|+|++.--.+.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCC
Confidence 44567999999999 4454 444544432 2358889999987544 4999998632221
Q ss_pred CC-------------------hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEE
Q 043585 216 FG-------------------GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 216 ~~-------------------d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
-+ .+....+++++.+.|++ ||+++++..-.. ...++.++++..||.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSELS--------GVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEeccc--------CHHHHHHHHHHCCCCeEEE
Confidence 11 11245688999999999 999998654332 2456777777777765444
Q ss_pred E
Q 043585 277 T 277 (287)
Q Consensus 277 ~ 277 (287)
.
T Consensus 183 ~ 183 (223)
T PRK14967 183 A 183 (223)
T ss_pred E
Confidence 3
No 83
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=5.5e-05 Score=64.21 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=80.6
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCC----C--CCCce-eeeccCcc-c-CC--CCCeEEecccc
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTP----Q--TENLK-YVADDMFQ-F-IP--PADAYFFMLFF 213 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~----~--~~Ri~-~~~gd~~~-~-~p--~~D~~~l~~vl 213 (287)
.-..||.||||+ .+|- |.+.+.+. + ...++ |+.++.-. + ++ ++|+|+..-+|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 345689999999 2332 33333322 1 45566 77777666 3 34 49999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-----------------CCC-CHHHHHHHHHhCCCcEEE
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-----------------DQR-TDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-----------------~~r-t~~e~~~ll~~aGf~~~~ 275 (287)
.-..|. ++.|+++++.|+| ||+++.+|.+..+.+.- .++ |. +..+.|++|-|...+
T Consensus 156 CSve~~--~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~f~~~~ 229 (252)
T KOG4300|consen 156 CSVEDP--VKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAEFSIDS 229 (252)
T ss_pred eccCCH--HHHHHHHHHhcCC---CcEEEEEecccccchHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhcccccch
Confidence 877664 7999999999999 99999999998776532 222 33 555678899998877
Q ss_pred EEecC
Q 043585 276 ITTMF 280 (287)
Q Consensus 276 ~~~~~ 280 (287)
..+.+
T Consensus 230 ~kr~~ 234 (252)
T KOG4300|consen 230 CKRFN 234 (252)
T ss_pred hhccc
Confidence 66663
No 84
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.85 E-value=0.00013 Score=62.55 Aligned_cols=110 Identities=14% Similarity=0.199 Sum_probs=80.5
Q ss_pred cceEEEecCcc---------cccchhhhhcCCCCCCceeeeccCcc-cCC-----CCCeEEeccccccCC-hHHHHHHHH
Q 043585 163 LGSMVDVGGGN---------VLDLPHAVANTPQTENLKYVADDMFQ-FIP-----PADAYFFMLFFHAFG-GEDSLKILK 226 (287)
Q Consensus 163 ~~~vlDvGgG~---------v~Dlp~vi~~a~~~~Ri~~~~gd~~~-~~p-----~~D~~~l~~vlh~~~-d~~~~~iL~ 226 (287)
.-++||||+=+ .|| -.-|+...+.+ .....||++ |+| .||+|.++-||...+ ..+.-++|+
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fd-vt~IDLns~~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~ 128 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFD-VTRIDLNSQHP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR 128 (219)
T ss_pred cceEEeecccCCCCcccccCcee-eEEeecCCCCC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH
Confidence 36999999974 333 11222222233 456789999 887 399999999999986 667779999
Q ss_pred HHHHHhcCCCCCcE-----EEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 227 KCREAIAGNGQRGK-----VLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 227 ~~~~al~~~~~~g~-----lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
++++.|+| +|. |+|+-+...- ...+--+.+-|.++++.-||..++....
T Consensus 129 r~~~fL~~---~g~~~~~~LFlVlP~~Cv-~NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 129 RAHKFLKP---PGLSLFPSLFLVLPLPCV-TNSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred HHHHHhCC---CCccCcceEEEEeCchHh-hcccccCHHHHHHHHHhCCcEEEEEEec
Confidence 99999999 888 8887543321 1125558899999999999999887654
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.84 E-value=9.1e-05 Score=66.12 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=72.6
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcccCC--CCCeEEecc---
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP--PADAYFFML--- 211 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p--~~D~~~l~~--- 211 (287)
.+..+|+|+|||. .+|. +..++.+++ ..++.++.+|++++.+ .+|+|+..-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567899999998 3444 444555442 4689999999988654 499998742
Q ss_pred ---ccccCCh------------------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCC
Q 043585 212 ---FFHAFGG------------------EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAG 270 (287)
Q Consensus 212 ---vlh~~~d------------------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aG 270 (287)
.++...+ +...++++++.+.|+| ||.+++ +. .....+++.+++++.|
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~--------g~~~~~~~~~~l~~~g 254 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI--------GYDQGEAVRALLAAAG 254 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE--------CchHHHHHHHHHHhCC
Confidence 1121111 2236789999999999 898877 22 1123578999999999
Q ss_pred CcEEEEE
Q 043585 271 FTCCKIT 277 (287)
Q Consensus 271 f~~~~~~ 277 (287)
|+.+++.
T Consensus 255 f~~v~~~ 261 (275)
T PRK09328 255 FADVETR 261 (275)
T ss_pred CceeEEe
Confidence 9866664
No 86
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=3.5e-05 Score=66.80 Aligned_cols=111 Identities=22% Similarity=0.343 Sum_probs=83.0
Q ss_pred cceEEEecCcc---c----------------ccc-hhhhhcCCC-----CCCceeeeccCccc-C--C----CCCeEEec
Q 043585 163 LGSMVDVGGGN---V----------------LDL-PHAVANTPQ-----TENLKYVADDMFQF-I--P----PADAYFFM 210 (287)
Q Consensus 163 ~~~vlDvGgG~---v----------------~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~-~--p----~~D~~~l~ 210 (287)
..+++.||||. + +|. |..++..++ ..|+..-..|+..+ . | ..|++.+.
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 34899999999 3 332 444544443 46676667777663 1 1 38999999
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-----C------------CC----CCHHHHHHHHHhC
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED-----E------------DQ----RTDKEWKTLFLDA 269 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~-----~------------~~----rt~~e~~~ll~~a 269 (287)
.||--.+++.-...++++++.|+| ||.|+.-|.-..+-.. . .. .+.+++.+|+++|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 999999999999999999999999 9999999876533210 0 22 3889999999999
Q ss_pred CCcEEEE
Q 043585 270 GFTCCKI 276 (287)
Q Consensus 270 Gf~~~~~ 276 (287)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9986653
No 87
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.83 E-value=4.2e-05 Score=70.87 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=61.3
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC-----CCCceeeeccCcccCC-CCCeEEeccccccC--
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQFIP-PADAYFFMLFFHAF-- 216 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~~p-~~D~~~l~~vlh~~-- 216 (287)
..+|||+|||. .+|. +.+++.+++ .-..+++.+|.+...+ .||+|++.-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 45899999999 3454 445555543 2245678889887545 49999999999963
Q ss_pred -ChHHHHHHHHHHHHHhcCCCCCcEEEEEee
Q 043585 217 -GGEDSLKILKKCREAIAGNGQRGKVLIMDI 246 (287)
Q Consensus 217 -~d~~~~~iL~~~~~al~~~~~~g~lli~e~ 246 (287)
+.+...++++++++.|+| ||+++|+-.
T Consensus 277 ~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred ccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 456678999999999999 999988654
No 88
>PHA03411 putative methyltransferase; Provisional
Probab=97.83 E-value=8.5e-05 Score=66.29 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=74.3
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC-CCCceeeeccCcccC-C-CCCeEEeccccccCChHHH
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ-TENLKYVADDMFQFI-P-PADAYFFMLFFHAFGGEDS 221 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-~~Ri~~~~gd~~~~~-p-~~D~~~l~~vlh~~~d~~~ 221 (287)
..+|||+|||. .+|+ |.+++.+++ .++++++.+|+++.. + .+|+|+..--++..+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46999999999 3344 556666554 568999999999843 3 4999999777766443322
Q ss_pred ------------------HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcE
Q 043585 222 ------------------LKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 222 ------------------~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 273 (287)
.++++.+...|+| +|.++++ ....+--...-+.+||+++|+++||..
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~--yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA--YSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE--EeccccccccCCHHHHHHHHHhcCcEe
Confidence 3566777888888 7866665 222211124557899999999999974
No 89
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.83 E-value=1.7e-05 Score=70.34 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=67.0
Q ss_pred CcceEEEecCcc--------------------cccc-hhhhhcCCC----CCC--ceeeeccCccc-----CC---C-CC
Q 043585 162 RLGSMVDVGGGN--------------------VLDL-PHAVANTPQ----TEN--LKYVADDMFQF-----IP---P-AD 205 (287)
Q Consensus 162 ~~~~vlDvGgG~--------------------v~Dl-p~vi~~a~~----~~R--i~~~~gd~~~~-----~p---~-~D 205 (287)
+...+||||+|. -+|. |-|+..++. .++ ..++.+|+.+| .| . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 789999999998 3454 666777663 344 88999999995 12 1 33
Q ss_pred -----eEEeccccccCCh-HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---------------CCCCHHHHHH
Q 043585 206 -----AYFFMLFFHAFGG-EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---------------DQRTDKEWKT 264 (287)
Q Consensus 206 -----~~~l~~vlh~~~d-~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---------------~~rt~~e~~~ 264 (287)
+++|..+||..+| ++...+++..+++|+| |+.|.|....-+..+.. ..||.+|+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~ 224 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAA 224 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHH
Confidence 7999999999977 8899999999999999 78877766654432211 7789999999
Q ss_pred HHHhCCCcEE
Q 043585 265 LFLDAGFTCC 274 (287)
Q Consensus 265 ll~~aGf~~~ 274 (287)
+|. ||..+
T Consensus 225 ~f~--g~elv 232 (267)
T PF04672_consen 225 FFD--GLELV 232 (267)
T ss_dssp CCT--TSEE-
T ss_pred HcC--CCccC
Confidence 987 66543
No 90
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.82 E-value=0.00026 Score=62.09 Aligned_cols=135 Identities=13% Similarity=0.207 Sum_probs=90.8
Q ss_pred hhhhhccCchHHHHHHHHHHhcccc----hhhH-hhhcccccccCcceEEEecCcc------------cccchhhhhcCC
Q 043585 123 HWEIMSQNPRLSQRFNQAMVNDSEM----ATFI-VKDCCRTLIERLGSMVDVGGGN------------VLDLPHAVANTP 185 (287)
Q Consensus 123 ~~e~~~~~~~~~~~f~~aM~~~s~~----~~~~-~~~~~~~~~~~~~~vlDvGgG~------------v~Dlp~vi~~a~ 185 (287)
.++.+.+||..-..|++....-... .... ++.+ . .-++...|.|+|||. -|||-.+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~i-k-~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~----- 210 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKI-K-RRPKNIVIADFGCGEAKIASSERHKVHSFDLVAV----- 210 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHH-H-hCcCceEEEecccchhhhhhccccceeeeeeecC-----
Confidence 4555667887666666665543322 1222 3333 2 235667899999998 3555332
Q ss_pred CCCCceeeeccCcc-cCC--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHH
Q 043585 186 QTENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEW 262 (287)
Q Consensus 186 ~~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~ 262 (287)
. =.+++.|+.. |++ +.|+++++-.|..-+ ....++.+++.|++ ||.++|.|.-. +--+..++
T Consensus 211 -~--~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn---~~df~kEa~RiLk~---gG~l~IAEv~S------Rf~dv~~f 275 (325)
T KOG3045|consen 211 -N--ERVIACDMRNVPLEDESVDVAVFCLSLMGTN---LADFIKEANRILKP---GGLLYIAEVKS------RFSDVKGF 275 (325)
T ss_pred -C--CceeeccccCCcCccCcccEEEeeHhhhccc---HHHHHHHHHHHhcc---CceEEEEehhh------hcccHHHH
Confidence 2 2456888888 665 489988877765432 24589999999999 99999988421 44457789
Q ss_pred HHHHHhCCCcEEEEEec
Q 043585 263 KTLFLDAGFTCCKITTM 279 (287)
Q Consensus 263 ~~ll~~aGf~~~~~~~~ 279 (287)
.+-|...||.+..+.-.
T Consensus 276 ~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 276 VRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHcCCeeeehhhh
Confidence 99999999998766543
No 91
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.2e-05 Score=68.40 Aligned_cols=134 Identities=13% Similarity=0.267 Sum_probs=87.5
Q ss_pred CchHHHHHHHHHHhcccchhhHhhhcccccccCcceEEEecCcc----------------cccc-hhhhhcCCC---CCC
Q 043585 130 NPRLSQRFNQAMVNDSEMATFIVKDCCRTLIERLGSMVDVGGGN----------------VLDL-PHAVANTPQ---TEN 189 (287)
Q Consensus 130 ~~~~~~~f~~aM~~~s~~~~~~~~~~~~~~~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~---~~R 189 (287)
||.. .|...-+..+.++..+++.+ ..++.+++|+|||+ .+|. |..++.+++ ...
T Consensus 136 DPGl--AFGTG~HpTT~lcL~~Le~~----~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~ 209 (300)
T COG2264 136 DPGL--AFGTGTHPTTSLCLEALEKL----LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG 209 (300)
T ss_pred cccc--ccCCCCChhHHHHHHHHHHh----hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC
Confidence 4543 35544455555554456666 34789999999999 6887 666777664 233
Q ss_pred ce----eeeccCcc-cCC-CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHH
Q 043585 190 LK----YVADDMFQ-FIP-PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWK 263 (287)
Q Consensus 190 i~----~~~gd~~~-~~p-~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~ 263 (287)
+. ....+..+ +.. .||+|+.. || -+-.+++...+++.++| ||++++.- ++.+ ..+...
T Consensus 210 v~~~~~~~~~~~~~~~~~~~~DvIVAN-IL----A~vl~~La~~~~~~lkp---gg~lIlSG-Il~~-------q~~~V~ 273 (300)
T COG2264 210 VELLVQAKGFLLLEVPENGPFDVIVAN-IL----AEVLVELAPDIKRLLKP---GGRLILSG-ILED-------QAESVA 273 (300)
T ss_pred CchhhhcccccchhhcccCcccEEEeh-hh----HHHHHHHHHHHHHHcCC---CceEEEEe-ehHh-------HHHHHH
Confidence 33 23333333 221 49998653 33 13346788899999999 88877754 3332 156788
Q ss_pred HHHHhCCCcEEEEEecCCccce
Q 043585 264 TLFLDAGFTCCKITTMFGLKSL 285 (287)
Q Consensus 264 ~ll~~aGf~~~~~~~~~~~~s~ 285 (287)
+.++++||++.++..-.++..+
T Consensus 274 ~a~~~~gf~v~~~~~~~eW~~i 295 (300)
T COG2264 274 EAYEQAGFEVVEVLEREEWVAI 295 (300)
T ss_pred HHHHhCCCeEeEEEecCCEEEE
Confidence 8899999999999888776655
No 92
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.79 E-value=3.1e-05 Score=65.24 Aligned_cols=112 Identities=16% Similarity=0.220 Sum_probs=75.4
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCCCCCceeeeccCccc---CC--CCCeEEeccccccCCh
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQTENLKYVADDMFQF---IP--PADAYFFMLFFHAFGG 218 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~~~Ri~~~~gd~~~~---~p--~~D~~~l~~vlh~~~d 218 (287)
+...+|||+|||. .+++ ++-+..+. ...+.++.+|..+. +| .||.|++++.|.....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 4568999999999 2222 11111111 45578999998884 55 3999999999998877
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeec---------------cCCCCC-C---------CCCCHHHHHHHHHhCCCcE
Q 043585 219 EDSLKILKKCREAIAGNGQRGKVLIMDIV---------------INEKED-E---------DQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 219 ~~~~~iL~~~~~al~~~~~~g~lli~e~~---------------~~~~~~-~---------~~rt~~e~~~ll~~aGf~~ 273 (287)
.+ ++|+++ |+- |.+.+|.=+- .|-+.. + +..|.+++++++++.|+++
T Consensus 91 P~--~vL~Em---lRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 91 PD--EVLEEM---LRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred HH--HHHHHH---HHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 64 677766 555 4444443111 111110 0 6679999999999999999
Q ss_pred EEEEecCC
Q 043585 274 CKITTMFG 281 (287)
Q Consensus 274 ~~~~~~~~ 281 (287)
.+...+.+
T Consensus 163 ~~~~~~~~ 170 (193)
T PF07021_consen 163 EERVFLDG 170 (193)
T ss_pred EEEEEEcC
Confidence 99988754
No 93
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.77 E-value=2.4e-05 Score=70.81 Aligned_cols=127 Identities=14% Similarity=0.245 Sum_probs=80.8
Q ss_pred HHHHHHhcccchhhHhhhcccccccCcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCcee
Q 043585 137 FNQAMVNDSEMATFIVKDCCRTLIERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKY 192 (287)
Q Consensus 137 f~~aM~~~s~~~~~~~~~~~~~~~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~ 192 (287)
|...-+.++++....++.+ ..+..+|||||||+ .+|. |..++.+++ .+++.+
T Consensus 140 FGTG~H~TT~lcl~~l~~~----~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEKY----VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp S-SSHCHHHHHHHHHHHHH----SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred ccCCCCHHHHHHHHHHHHh----ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 5445555555554445555 24457999999999 5776 555666653 557765
Q ss_pred ee-ccCcccCCCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCC
Q 043585 193 VA-DDMFQFIPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 193 ~~-gd~~~~~p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf 271 (287)
.. .|.. ...||+|+.. ++ .+-...++..+.+.|+| ||.+++.-....+ .+++.+.+++ ||
T Consensus 216 ~~~~~~~--~~~~dlvvAN-I~----~~vL~~l~~~~~~~l~~---~G~lIlSGIl~~~--------~~~v~~a~~~-g~ 276 (295)
T PF06325_consen 216 SLSEDLV--EGKFDLVVAN-IL----ADVLLELAPDIASLLKP---GGYLILSGILEEQ--------EDEVIEAYKQ-GF 276 (295)
T ss_dssp SCTSCTC--CS-EEEEEEE-S-----HHHHHHHHHHCHHHEEE---EEEEEEEEEEGGG--------HHHHHHHHHT-TE
T ss_pred EEecccc--cccCCEEEEC-CC----HHHHHHHHHHHHHhhCC---CCEEEEccccHHH--------HHHHHHHHHC-CC
Confidence 31 1221 1359998753 33 24456788888999999 7777775444333 5688888877 99
Q ss_pred cEEEEEecCCcccee
Q 043585 272 TCCKITTMFGLKSLI 286 (287)
Q Consensus 272 ~~~~~~~~~~~~s~i 286 (287)
++.+...-.++.+++
T Consensus 277 ~~~~~~~~~~W~~l~ 291 (295)
T PF06325_consen 277 ELVEEREEGEWVALV 291 (295)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred EEEEEEEECCEEEEE
Confidence 999988877766553
No 94
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.76 E-value=6.2e-05 Score=58.35 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=55.6
Q ss_pred cccCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcc---cC-CCCCeEEec
Q 043585 159 LIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQ---FI-PPADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~---~~-p~~D~~~l~ 210 (287)
......+++|+|||. .+|. +..++.+++ ..+++++.+|... .. +.+|+|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 344557999999999 4554 444544432 4678998888664 12 259999987
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
...+ ...++++.+++.|+| ||++++.
T Consensus 96 ~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 96 GSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred Ccch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 6543 345899999999999 8988763
No 95
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.76 E-value=4.9e-05 Score=63.30 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=60.5
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcccCC--CCCeEEecccccc
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP--PADAYFFMLFFHA 215 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p--~~D~~~l~~vlh~ 215 (287)
...++||+|||+ .+|. |..++.+++ .+.++++.+|.++..+ .||+|++.=-+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 678999999999 4454 555665543 2339999999999766 4999999988877
Q ss_pred CCh---HHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 216 FGG---EDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 216 ~~d---~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
-.+ +-..++++.+++.|+| ||+++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 654 4567899999999999 99997643
No 96
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=6.7e-05 Score=65.12 Aligned_cols=82 Identities=12% Similarity=0.260 Sum_probs=54.2
Q ss_pred CceeeeccCcc-cCCCCCeEEeccc---cc-cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc-CCCCC-C-------
Q 043585 189 NLKYVADDMFQ-FIPPADAYFFMLF---FH-AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI-NEKED-E------- 254 (287)
Q Consensus 189 Ri~~~~gd~~~-~~p~~D~~~l~~v---lh-~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~-~~~~~-~------- 254 (287)
++.+..-||.+ ..|.||+|++-.| +| +|.|+-.+++++++++.|.| ||.| |+|+-- ..-.. .
T Consensus 151 n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---gGiL-vvEPQpWksY~kaar~~e~~~ 226 (288)
T KOG2899|consen 151 NYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---GGIL-VVEPQPWKSYKKAARRSEKLA 226 (288)
T ss_pred cEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---CcEE-EEcCCchHHHHHHHHHHHHhh
Confidence 34445556776 3567999987553 45 89999999999999999999 6655 445311 00000 0
Q ss_pred -----CCCCHHHHHHHHHhC--CCcEE
Q 043585 255 -----DQRTDKEWKTLFLDA--GFTCC 274 (287)
Q Consensus 255 -----~~rt~~e~~~ll~~a--Gf~~~ 274 (287)
-.-.++.+..|+.+. ||+.+
T Consensus 227 ~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 227 ANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred cCccceecCHHHHHhhhhhhhhheeee
Confidence 233678899999887 55443
No 97
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.70 E-value=0.00011 Score=61.15 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=77.9
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCC------C-CCCceeeeccCccc--CC-CCCeEEeccccc
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTP------Q-TENLKYVADDMFQF--IP-PADAYFFMLFFH 214 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~------~-~~Ri~~~~gd~~~~--~p-~~D~~~l~~vlh 214 (287)
..+|||+|||+ .+|. +..++.|+ . .+.|+|+..|+++| .+ ++|+|+=+-.+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999 3444 44444443 2 45599999999996 33 488888776543
Q ss_pred ------cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 215 ------AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 215 ------~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
+-.+......+..+.+.|+| ||.++|.-+ ..|..|+.+.++.-||.....+|++
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSC---------N~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSC---------NFTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCC---CcEEEEEec---------CccHHHHHHHHhcCCeEEEEeeccc
Confidence 33333335578888899999 898888642 3578999999999999999888876
No 98
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.70 E-value=0.0002 Score=64.70 Aligned_cols=105 Identities=16% Similarity=0.301 Sum_probs=73.4
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCcccCC--CCCeEEecc---
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIP--PADAYFFML--- 211 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p--~~D~~~l~~--- 211 (287)
+..+|+|+|||+ .+|. +..++.|++ .+||+++.+|++++++ .+|+|++.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999 4565 666666653 3689999999988665 499999741
Q ss_pred ----------ccccCCh----------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCC
Q 043585 212 ----------FFHAFGG----------EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 212 ----------vlh~~~d----------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf 271 (287)
.+++.+. +...++++.+.+.|+| ||++++ |.- .+.++.++++.++||
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~-e~g---------~~~~~v~~~~~~~~~ 267 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV-EVG---------NSMEALEEAYPDVPF 267 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE-EEC---------cCHHHHHHHHHhCCC
Confidence 1121111 2336889999999999 887764 432 134688999999999
Q ss_pred cEEEEEec
Q 043585 272 TCCKITTM 279 (287)
Q Consensus 272 ~~~~~~~~ 279 (287)
......+.
T Consensus 268 ~~~~~~~~ 275 (284)
T TIGR03533 268 TWLEFENG 275 (284)
T ss_pred ceeeecCC
Confidence 87655433
No 99
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.68 E-value=8.6e-05 Score=54.43 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=58.4
Q ss_pred eEEEecCcc----------------cccc-hhhhhcCC------CCCCceeeeccCcccC---C-CCCeEEeccccccCC
Q 043585 165 SMVDVGGGN----------------VLDL-PHAVANTP------QTENLKYVADDMFQFI---P-PADAYFFMLFFHAFG 217 (287)
Q Consensus 165 ~vlDvGgG~----------------v~Dl-p~vi~~a~------~~~Ri~~~~gd~~~~~---p-~~D~~~l~~vlh~~~ 217 (287)
+++|+|+|. .+|+ +..+..++ ...++++..+|+.+.. + ++|++++...+|.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 579999987 4554 33333333 2578999999998842 2 49999999999986
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
.+....+++++.+.+++ +|.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 55678999999999999 8988765
No 100
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.68 E-value=0.00021 Score=59.97 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=73.5
Q ss_pred cccCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcccC---CCCCeEEecc
Q 043585 159 LIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFI---PPADAYFFML 211 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~---p~~D~~~l~~ 211 (287)
...+..+++|||||+ -+|. ++.++..++ .++++.+.||.-+-+ |.+|++++.-
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 466788999999999 2332 333333332 789999999988843 3599999987
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCC-cEEEEE
Q 043585 212 FFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGF-TCCKIT 277 (287)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf-~~~~~~ 277 (287)
-- ....||+.+...|+| ||+|++.=..+. +.....+++++.|+ .++++.
T Consensus 111 g~------~i~~ile~~~~~l~~---ggrlV~naitlE--------~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 111 GG------NIEEILEAAWERLKP---GGRLVANAITLE--------TLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CC------CHHHHHHHHHHHcCc---CCeEEEEeecHH--------HHHHHHHHHHHcCCceEEEEE
Confidence 62 234699999999999 899887543333 36677888999999 555444
No 101
>PRK03612 spermidine synthase; Provisional
Probab=97.68 E-value=0.00017 Score=70.50 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=71.6
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC-------------CCCceeeeccCccc---CC-CCC
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------------TENLKYVADDMFQF---IP-PAD 205 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------------~~Ri~~~~gd~~~~---~p-~~D 205 (287)
.+.++|||||||. .+|+ |++++.+++ .+|++++.+|..+- .+ +||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4578999999999 4555 777777654 37999999998872 23 599
Q ss_pred eEEeccccccCChH---HHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCc
Q 043585 206 AYFFMLFFHAFGGE---DSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFT 272 (287)
Q Consensus 206 ~~~l~~vlh~~~d~---~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~ 272 (287)
+|++...-+..+.. -...+++++++.|+| ||.+++.-. .+ ....+...++.+.++++||.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~~~-~~---~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQST-SP---YFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEecC-Cc---ccchHHHHHHHHHHHHcCCE
Confidence 99886332211111 113588999999999 888776431 11 11334467889999999993
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.67 E-value=0.00064 Score=58.58 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred ccCcceEEEecCcc------------------cccchhhhhcCCCCCCceeeeccCccc---------CC--CCCeEEec
Q 043585 160 IERLGSMVDVGGGN------------------VLDLPHAVANTPQTENLKYVADDMFQF---------IP--PADAYFFM 210 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~~---------~p--~~D~~~l~ 210 (287)
+.+..+|||||||+ .+|+.++ .....++++.+|+.++ .+ .+|+|+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 46678999999999 2333221 1134689999999883 33 49999986
Q ss_pred cccccCChH---------HHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 211 LFFHAFGGE---------DSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 211 ~vlh~~~d~---------~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
-..|...+. ....+|+.+++.|+| ||.+++..+.-. ...++...+. ..|..+++...
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~~~~--------~~~~~l~~l~-~~f~~v~~~Kp 190 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVFQGE--------GFDEYLREIR-SLFTKVKVRKP 190 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEecCc--------CHHHHHHHHH-hCceEEEEECC
Confidence 655544321 125689999999999 999998643222 2344432222 25777766543
No 103
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.66 E-value=9.2e-05 Score=63.57 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=54.5
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCcccCC---CCCeEEe
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIP---PADAYFF 209 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p---~~D~~~l 209 (287)
......+|||||||+ .+|. |+.++.+++ ..+++++.+|+.+..+ .||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 345567999999999 2444 555555442 3568999999987433 4999999
Q ss_pred ccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 210 MLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
...++..++ ++.+.|+| ||+|++.
T Consensus 149 ~~~~~~~~~--------~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 149 TAAASTIPS--------ALVRQLKD---GGVLVIP 172 (205)
T ss_pred ccCcchhhH--------HHHHhcCc---CcEEEEE
Confidence 988876553 45678999 9998774
No 104
>PRK04457 spermidine synthase; Provisional
Probab=97.65 E-value=6.9e-05 Score=66.90 Aligned_cols=80 Identities=16% Similarity=0.347 Sum_probs=59.4
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCccc---CC-CCCeEEecc
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQF---IP-PADAYFFML 211 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~---~p-~~D~~~l~~ 211 (287)
+.+++|||||||. ++|+ |++++.+++ .+|++++.+|..+- .+ .||+|++-
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 4567899999998 6777 888888763 47899999998662 34 49999874
Q ss_pred cccc--CChH-HHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 212 FFHA--FGGE-DSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 212 vlh~--~~d~-~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
.++. .+.. ....++++|++.|+| ||.++|.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 2322 1211 126899999999999 8988884
No 105
>PRK01581 speE spermidine synthase; Validated
Probab=97.64 E-value=0.0002 Score=66.31 Aligned_cols=110 Identities=12% Similarity=0.126 Sum_probs=73.3
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC-------------CCCceeeeccCcccC---C-CCC
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------------TENLKYVADDMFQFI---P-PAD 205 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------------~~Ri~~~~gd~~~~~---p-~~D 205 (287)
.++.+||+||||. ++|+ |.|++.|+. .+|++++.+|..+-+ + .||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 5578999999998 4565 677777662 579999999998732 2 499
Q ss_pred eEEecccccc----CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 206 AYFFMLFFHA----FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 206 ~~~l~~vlh~----~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
+|++--. .. ...--...+++.|+++|+| ||.+++... .+.....-...+.+.|+++||.+.....
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Qs~----sp~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTE---DGAFVCQSN----SPADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCC---CcEEEEecC----ChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 9998621 11 1112235689999999999 888776521 1100111124468889999998765543
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.63 E-value=0.0003 Score=64.25 Aligned_cols=103 Identities=16% Similarity=0.273 Sum_probs=72.2
Q ss_pred ceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCcccCC--CCCeEEecc-----
Q 043585 164 GSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIP--PADAYFFML----- 211 (287)
Q Consensus 164 ~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p--~~D~~~l~~----- 211 (287)
.+|||+|||+ .+|. |..++.|++ .+||+++.+|+++..| .+|+|++.=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999 4665 666766653 3689999999988655 499999741
Q ss_pred --------ccccCCh----------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcE
Q 043585 212 --------FFHAFGG----------EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 212 --------vlh~~~d----------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 273 (287)
.++..+. +...++++++.+.|+| ||++++ |.-. +.++..+++.+.||..
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~-E~g~---------~~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV-EVGN---------SRVHLEEAYPDVPFTW 281 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE-EECc---------CHHHHHHHHhhCCCEE
Confidence 1121111 2346899999999999 888776 4221 2456888888888877
Q ss_pred EEEEec
Q 043585 274 CKITTM 279 (287)
Q Consensus 274 ~~~~~~ 279 (287)
....+.
T Consensus 282 ~~~~~~ 287 (307)
T PRK11805 282 LEFENG 287 (307)
T ss_pred EEecCC
Confidence 665543
No 107
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.62 E-value=0.00013 Score=63.04 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=54.8
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcccCC---CCCeEEec
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP---PADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p---~~D~~~l~ 210 (287)
+.....+|||||||+ .+|. |++++.+++ .++++++.+|..+..+ .||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 456778999999998 2343 556665543 4679999999987432 49999998
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
..++..+ +.+.+.|+| ||++++.
T Consensus 153 ~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 153 AAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCcccch--------HHHHHhhCC---CcEEEEE
Confidence 7765443 345668999 9998885
No 108
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.56 E-value=0.00032 Score=64.64 Aligned_cols=106 Identities=15% Similarity=0.010 Sum_probs=74.0
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcc-cCC--CCCeEEecccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-FIP--PADAYFFMLFF 213 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~~p--~~D~~~l~~vl 213 (287)
.+.+..+|+|+|||+ .+|. +.+++.++. .+.+.+..+|+.+ +.+ .+|+|++.--.
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCC
Confidence 345677999999999 4666 556665442 2348899999988 553 48999984221
Q ss_pred -------ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 214 -------HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 214 -------h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
.+...+-..++|+.+++.|+| ||+++++- +. ..+|.++++++|| +......
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~---~~--------~~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAV---PT--------RIDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEE---cC--------CCCHHHHHhhcCc-chheeee
Confidence 112223357899999999999 99998863 22 2267788999999 7766654
No 109
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.55 E-value=0.00048 Score=65.05 Aligned_cols=106 Identities=15% Similarity=0.255 Sum_probs=72.8
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC-----CCCceeeeccCccc-CC---CCCeEEeccccc
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQF-IP---PADAYFFMLFFH 214 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~-~p---~~D~~~l~~vlh 214 (287)
...+++|+|||+ .+|. |.+++.+++ ..|++++.+|++++ .| .+|+|++.---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446899999999 4666 677777654 45899999999873 33 389998843211
Q ss_pred cCC------------h-----------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCC
Q 043585 215 AFG------------G-----------EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 215 ~~~------------d-----------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf 271 (287)
.-+ + +--.+|++.+.+.|+| ||.++ +|.-.+ ..++..+++++.||
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG~~--------Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHGFD--------QGAAVRGVLAENGF 398 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEECcc--------HHHHHHHHHHHCCC
Confidence 100 0 1134778888889999 88765 443222 26688999999999
Q ss_pred cEEEEEec
Q 043585 272 TCCKITTM 279 (287)
Q Consensus 272 ~~~~~~~~ 279 (287)
+.+++..-
T Consensus 399 ~~v~v~kD 406 (423)
T PRK14966 399 SGVETLPD 406 (423)
T ss_pred cEEEEEEc
Confidence 87766543
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.47 E-value=0.00057 Score=66.66 Aligned_cols=108 Identities=16% Similarity=0.326 Sum_probs=74.0
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCcccCC--CCCeEEecc---
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIP--PADAYFFML--- 211 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p--~~D~~~l~~--- 211 (287)
...+|||+|||+ .+|. |.+++.|++ .+|++++.+|+++..+ .+|+|++.=
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999 4665 566666653 4689999999988654 499998731
Q ss_pred -----------ccccCC------h----HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCC
Q 043585 212 -----------FFHAFG------G----EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAG 270 (287)
Q Consensus 212 -----------vlh~~~------d----~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aG 270 (287)
++.+.+ . +--.+|++.+.+.|+| ||.+++ |.-. ...++..+++.+.|
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~--------~q~~~v~~~~~~~g 285 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF--------KQEEAVTQIFLDHG 285 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC--------chHHHHHHHHHhcC
Confidence 111111 1 1235678889999999 888765 4221 23668899999999
Q ss_pred CcEEEEEe-cCC
Q 043585 271 FTCCKITT-MFG 281 (287)
Q Consensus 271 f~~~~~~~-~~~ 281 (287)
|+.++++. ..|
T Consensus 286 ~~~~~~~~D~~g 297 (506)
T PRK01544 286 YNIESVYKDLQG 297 (506)
T ss_pred CCceEEEecCCC
Confidence 98776654 344
No 111
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.47 E-value=0.00065 Score=61.30 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=70.1
Q ss_pred ceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCcccCC--CCCeEEec------
Q 043585 164 GSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIP--PADAYFFM------ 210 (287)
Q Consensus 164 ~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p--~~D~~~l~------ 210 (287)
.+|+|+|||+ .+|. +..++.+++ ..|++++.+|++++++ .+|+|+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999 4454 556665553 3579999999998765 49998874
Q ss_pred -------cccccCCh----------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHH-hCCCc
Q 043585 211 -------LFFHAFGG----------EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFL-DAGFT 272 (287)
Q Consensus 211 -------~vlh~~~d----------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~-~aGf~ 272 (287)
.++++-+. +...++++++.+.|+| ||.++ +|.-.. ..+...+++. +.||.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~-~e~g~~--------q~~~~~~~~~~~~~~~ 263 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLV-CEIGNW--------QQKSLKELLRIKFTWY 263 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEE-EEECcc--------HHHHHHHHHHhcCCCc
Confidence 23332221 2456899999999999 77664 453322 2457788888 46897
Q ss_pred EEEEE
Q 043585 273 CCKIT 277 (287)
Q Consensus 273 ~~~~~ 277 (287)
.++++
T Consensus 264 ~~~~~ 268 (284)
T TIGR00536 264 DVENG 268 (284)
T ss_pred eeEEe
Confidence 66554
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.44 E-value=0.00051 Score=58.37 Aligned_cols=101 Identities=12% Similarity=0.169 Sum_probs=65.9
Q ss_pred cccCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCccc---C-CCCCeEEec
Q 043585 159 LIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQF---I-PPADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~---~-p~~D~~~l~ 210 (287)
......+|||+|||. .+|. |.+++.+++ .++++++.+|..+. . +.+|.+++.
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 345567999999999 4666 666666553 35799999988652 2 235765442
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHh---CCCcEEEE
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLD---AGFTCCKI 276 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~---aGf~~~~~ 276 (287)
. ......+|+++++.|+| ||++++...... +..+..+.+++ .|+.+.++
T Consensus 117 -----~-~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 117 -----G-GRPIKEILQAVWQYLKP---GGRLVATASSLE--------GLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred -----C-CcCHHHHHHHHHHhcCC---CeEEEEEeecHH--------HHHHHHHHHHhcCCCCceEEEE
Confidence 1 23456899999999999 999988764322 23344455554 35555554
No 113
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.43 E-value=0.00019 Score=64.29 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=52.2
Q ss_pred CcceEEEecCcc--------------------cccc-hhhhhcCCC-CCCceeeeccCcc-cCC--CCCeEEeccccccC
Q 043585 162 RLGSMVDVGGGN--------------------VLDL-PHAVANTPQ-TENLKYVADDMFQ-FIP--PADAYFFMLFFHAF 216 (287)
Q Consensus 162 ~~~~vlDvGgG~--------------------v~Dl-p~vi~~a~~-~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~ 216 (287)
...+|||||||. .+|+ +.+++.|++ .+++++..+|..+ |++ .+|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 457899999998 1343 445555543 5779999999887 665 3999986432
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
+ ..++++++.|+| ||+++++.
T Consensus 161 -~----~~~~e~~rvLkp---gG~li~~~ 181 (272)
T PRK11088 161 -P----CKAEELARVVKP---GGIVITVT 181 (272)
T ss_pred -C----CCHHHHHhhccC---CCEEEEEe
Confidence 1 246788899999 99999875
No 114
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.43 E-value=0.00054 Score=60.36 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=71.6
Q ss_pred CcceEEEecCcc---------cccchhhhhcCC------CCCCceeeeccCcccCC-CCCeEEeccccccCChHHHHHHH
Q 043585 162 RLGSMVDVGGGN---------VLDLPHAVANTP------QTENLKYVADDMFQFIP-PADAYFFMLFFHAFGGEDSLKIL 225 (287)
Q Consensus 162 ~~~~vlDvGgG~---------v~Dlp~vi~~a~------~~~Ri~~~~gd~~~~~p-~~D~~~l~~vlh~~~d~~~~~iL 225 (287)
+..++||||.|. .|.--.+-+... +...++.+..|-+..-+ .||+|.+-|+|..-.++ ..+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~LL 171 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LTLL 171 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCH--HHHH
Confidence 457899999999 222211111111 13445555554444333 59999999999876665 5899
Q ss_pred HHHHHHhcCCCCCcEEEEEeeccC------CCC----CC------CCCCHHHH----HHHHHhCCCcEEEEEecC
Q 043585 226 KKCREAIAGNGQRGKVLIMDIVIN------EKE----DE------DQRTDKEW----KTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 226 ~~~~~al~~~~~~g~lli~e~~~~------~~~----~~------~~rt~~e~----~~ll~~aGf~~~~~~~~~ 280 (287)
+.++++|+| +|++++.= ++| ..+ .+ ...|.+|. ...|+.+||++++....|
T Consensus 172 ~~i~~~l~p---~G~lilAv-VlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 172 RDIRRALKP---NGRLILAV-VLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHhCC---CCEEEEEE-EecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 999999999 89888632 222 111 11 33455443 367889999999888764
No 115
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.42 E-value=0.00032 Score=60.55 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=54.2
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcccCC---CCCeEEec
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP---PADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p---~~D~~~l~ 210 (287)
......+|||||||. .+|. |++++.+++ .++++++.+|..+..+ .||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 456778999999998 2332 556665543 4679999999987432 49999987
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
...+. +.+.+.+.|+| ||++++.
T Consensus 154 ~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 154 AAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 65543 34556788999 9998874
No 116
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.41 E-value=0.001 Score=61.04 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=45.1
Q ss_pred CCCcee--eeccCccc---CC------CC-CeEEeccccccCChHHHHHHHHHHHH-HhcCCCCCcEEEE-EeeccC
Q 043585 187 TENLKY--VADDMFQF---IP------PA-DAYFFMLFFHAFGGEDSLKILKKCRE-AIAGNGQRGKVLI-MDIVIN 249 (287)
Q Consensus 187 ~~Ri~~--~~gd~~~~---~p------~~-D~~~l~~vlh~~~d~~~~~iL~~~~~-al~~~~~~g~lli-~e~~~~ 249 (287)
.+.+++ +.|||.+. +| .. -++++...+.+++++++..+|+++++ .|.| ++.++| +|.+.+
T Consensus 129 ~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~k~ 202 (319)
T TIGR03439 129 FSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGCKD 202 (319)
T ss_pred CCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCCCC
Confidence 355665 78899763 22 13 35666789999999999999999999 9999 787777 565543
No 117
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.41 E-value=0.00012 Score=64.99 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=61.0
Q ss_pred ce-eeeccCcccC--------CC-CCeEEecccccc--CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC---CCC
Q 043585 190 LK-YVADDMFQFI--------PP-ADAYFFMLFFHA--FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK---EDE 254 (287)
Q Consensus 190 i~-~~~gd~~~~~--------p~-~D~~~l~~vlh~--~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~---~~~ 254 (287)
|+ ++..|.+.+. |+ +|+++...+|-. -+.++-.+.++++.+.|+| ||.|+++...-... +..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t~Y~vG~~ 211 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGSTYYMVGGH 211 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-SEEEETTE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCceeEEECCE
Confidence 44 5667888732 33 999999999985 3667778999999999999 89988877643221 111
Q ss_pred ----CCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 255 ----DQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 255 ----~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
---+.+..++.|+++||.+.....
T Consensus 212 ~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 212 KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 334889999999999999887764
No 118
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.39 E-value=0.00021 Score=64.54 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=60.7
Q ss_pred ccCcceEEEecCcc----------------cccchhh-hhcCCC--------CC----CceeeeccCccc-----C----
Q 043585 160 IERLGSMVDVGGGN----------------VLDLPHA-VANTPQ--------TE----NLKYVADDMFQF-----I---- 201 (287)
Q Consensus 160 ~~~~~~vlDvGgG~----------------v~Dlp~v-i~~a~~--------~~----Ri~~~~gd~~~~-----~---- 201 (287)
.++...++|+|||. ..|..+| |+.|++ .. -+.|+++|-+.. +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45677899999998 5666554 555543 22 257888887762 2
Q ss_pred CCCCeEEecccccc-C-ChHHHHHHHHHHHHHhcCCCCCcEEE
Q 043585 202 PPADAYFFMLFFHA-F-GGEDSLKILKKCREAIAGNGQRGKVL 242 (287)
Q Consensus 202 p~~D~~~l~~vlh~-~-~d~~~~~iL~~~~~al~~~~~~g~ll 242 (287)
|.+|+|-+..++|+ | +.+.+..+|+++++.|+| ||.++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FI 234 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFI 234 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEE
Confidence 34999999999997 4 788899999999999999 77665
No 119
>PRK00811 spermidine synthase; Provisional
Probab=97.37 E-value=0.00028 Score=63.65 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=68.5
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC-----------CCCceeeeccCcccC---C-CCCeE
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-----------TENLKYVADDMFQFI---P-PADAY 207 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-----------~~Ri~~~~gd~~~~~---p-~~D~~ 207 (287)
++.++|||||||. ++|+ |.+++.+++ .+|++++.+|...-+ + .||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999998 4554 666666653 578999999987722 2 49999
Q ss_pred EeccccccCChHH--HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 208 FFMLFFHAFGGED--SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 208 ~l~~vlh~~~d~~--~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
++-..-+.-.... ...+++.|++.|+| ||.+++. ...+. . .......+.+-++++ |..+..+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~-~~~~~-~--~~~~~~~i~~tl~~~-F~~v~~~~ 219 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ-SGSPF-Y--QADEIKDMHRKLKEV-FPIVRPYQ 219 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe-CCCcc-c--CHHHHHHHHHHHHHH-CCCEEEEE
Confidence 8744322212111 25788999999999 8877753 11111 0 112344455555566 55555544
No 120
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.37 E-value=0.00016 Score=61.69 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=42.7
Q ss_pred CCCceeeeccCcc-cCC--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 187 TENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 187 ~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
..+|+|..+|..+ +.+ .+|+|++++||-+++++...+++++++++|+| ||.|++=
T Consensus 117 r~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp HTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred cCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 5689999999999 322 49999999999999999999999999999999 8888873
No 121
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.36 E-value=0.00013 Score=56.28 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=58.0
Q ss_pred ceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCcc-c--CC--CCCeEEeccccc
Q 043585 164 GSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-F--IP--PADAYFFMLFFH 214 (287)
Q Consensus 164 ~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~--~p--~~D~~~l~~vlh 214 (287)
.+|||+|||. .+|+ |..++.++. .+|++++.+|+++ . .+ .+|+|++.-..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 5899999999 4665 555555542 5789999999988 3 33 499999988777
Q ss_pred cCCh------HHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 215 AFGG------EDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 215 ~~~d------~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
.... +....+++++.+.|+| ||.++++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 5421 1246889999999999 89888763
No 122
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.35 E-value=0.00029 Score=63.59 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=48.9
Q ss_pred CCCceeeeccCcc-cCC---CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEE
Q 043585 187 TENLKYVADDMFQ-FIP---PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLI 243 (287)
Q Consensus 187 ~~Ri~~~~gd~~~-~~p---~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli 243 (287)
..+|+|..+|..+ +.| .+|+|++++||.+++++...+++++++++|+| ||.|++
T Consensus 203 r~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~l 260 (287)
T PRK10611 203 ANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFA 260 (287)
T ss_pred HccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 5789999999999 443 49999999999999999999999999999999 898776
No 123
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.34 E-value=0.00038 Score=59.17 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=64.1
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcc-c---CC--CCCeEEecc
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-F---IP--PADAYFFML 211 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~---~p--~~D~~~l~~ 211 (287)
...++||||||. .+|. +.+++.+++ .++++++.+|+.+ + ++ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999 4555 555555532 3589999999976 2 33 377776654
Q ss_pred ccccCChHH-------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCC-CcEE
Q 043585 212 FFHAFGGED-------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAG-FTCC 274 (287)
Q Consensus 212 vlh~~~d~~-------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aG-f~~~ 274 (287)
.. .|.... ...+|+.+++.|+| ||.|++..... ...+++.+.+.+.| |...
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~td~~--------~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKTDNE--------PLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEeCCH--------HHHHHHHHHHHhCCCeEec
Confidence 32 233221 14689999999999 99998754221 12344455555554 5543
No 124
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.33 E-value=0.0022 Score=54.11 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=66.8
Q ss_pred cccCcceEEEecCcc------------------cccchhhhhcCCCCCCceeeeccCccc---------CC--CCCeEEe
Q 043585 159 LIERLGSMVDVGGGN------------------VLDLPHAVANTPQTENLKYVADDMFQF---------IP--PADAYFF 209 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~~---------~p--~~D~~~l 209 (287)
......+|||+|||+ .+|+.+.. ...+++++.+|+.++ .+ .+|+|+.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 346678999999999 22322211 235688888898762 23 4999997
Q ss_pred ccccc---cCC------hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 210 MLFFH---AFG------GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 210 ~~vlh---~~~------d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
....| .|+ .+...++|+.+++.|+| ||++++.- .. .....++...+++. |...++...
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~~-~~-------~~~~~~~l~~l~~~-~~~~~~~~~ 171 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVKV-FQ-------GEEIDEYLNELRKL-FEKVKVTKP 171 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEEE-cc-------CccHHHHHHHHHhh-hceEEEeCC
Confidence 53322 122 12346789999999999 99988852 11 12355676666664 766666554
No 125
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.33 E-value=0.00065 Score=58.68 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcccchhhH-hhhcccc-cccCcceEEEecCcc---------------cccc-hhhhhcCCC---CCCce
Q 043585 133 LSQRFNQAMVNDSEMATFI-VKDCCRT-LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ---TENLK 191 (287)
Q Consensus 133 ~~~~f~~aM~~~s~~~~~~-~~~~~~~-~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~---~~Ri~ 191 (287)
.+++|.......-.-..|. ++..... +...+++++|+|||+ .+|+ ..+++.|.+ .+...
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~ 173 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLY 173 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHH
Confidence 3456766666543333444 3322110 344589999999999 7887 457777764 33332
Q ss_pred e-eeccCccc--CCCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-------CCCCHHH
Q 043585 192 Y-VADDMFQF--IPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-------DQRTDKE 261 (287)
Q Consensus 192 ~-~~gd~~~~--~p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-------~~rt~~e 261 (287)
. ...+|... +..+|+|....||-+..+-+ .++--+...|+| ||-+...-.-.+..+.- ..-+..-
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~Y 248 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGGFVLGPSQRYAHSESY 248 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecccCCCCCeecchhhhhccchHH
Confidence 2 22245542 22599999999999988754 788899999999 78666533333333321 2236777
Q ss_pred HHHHHHhCCCcEEEEEec
Q 043585 262 WKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 262 ~~~ll~~aGf~~~~~~~~ 279 (287)
.+++++..||.++.+.++
T Consensus 249 Vr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 249 VRALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHHHHhcCceEEEeecc
Confidence 899999999999888765
No 126
>PLN02366 spermidine synthase
Probab=97.30 E-value=0.00053 Score=62.61 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=67.7
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC----------CCCceeeeccCcc---cCC--CCCeE
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ----------TENLKYVADDMFQ---FIP--PADAY 207 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~----------~~Ri~~~~gd~~~---~~p--~~D~~ 207 (287)
++.++||+||||. ++|+ |.|++.+++ .+|++++.+|.+. ..+ .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999998 4555 557776653 4799999999754 233 49999
Q ss_pred EeccccccCChHH---HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEE
Q 043585 208 FFMLFFHAFGGED---SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 208 ~l~~vlh~~~d~~---~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
++-..-+ +.... ...+++.++++|+| ||.+++.-. ..-...+....+.+-+.++....+..
T Consensus 170 i~D~~dp-~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q~~----s~~~~~~~~~~i~~tl~~~F~~~v~~ 233 (308)
T PLN02366 170 IVDSSDP-VGPAQELFEKPFFESVARALRP---GGVVCTQAE----SMWLHMDLIEDLIAICRETFKGSVNY 233 (308)
T ss_pred EEcCCCC-CCchhhhhHHHHHHHHHHhcCC---CcEEEECcC----CcccchHHHHHHHHHHHHHCCCceeE
Confidence 8733222 11111 34689999999999 888765321 00001223455666666774345543
No 127
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.27 E-value=0.0011 Score=58.42 Aligned_cols=114 Identities=14% Similarity=0.259 Sum_probs=80.4
Q ss_pred hhhcccccccCcceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCcccC---C-
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFI---P- 202 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~---p- 202 (287)
+..| . ..+...+|+|+|+|. .+++ +...+.|++ .+||+++.+|+..-. +
T Consensus 36 L~~~-~-~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 36 LAAF-A-PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHhh-c-ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 4445 3 344589999999999 3444 334444432 899999999998832 2
Q ss_pred -CCCeEEeccccccCChH----------------HHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHH
Q 043585 203 -PADAYFFMLFFHAFGGE----------------DSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTL 265 (287)
Q Consensus 203 -~~D~~~l~~vlh~~~d~----------------~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~l 265 (287)
.||+|++.=-.+.-.+. .-..+++.+++.|++ +|++.++- + .-...|+.++
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~---r------~erl~ei~~~ 181 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVH---R------PERLAEIIEL 181 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEe---c------HHHHHHHHHH
Confidence 38999887665554443 236789999999999 99998863 1 1137799999
Q ss_pred HHhCCCcEEEEEec
Q 043585 266 FLDAGFTCCKITTM 279 (287)
Q Consensus 266 l~~aGf~~~~~~~~ 279 (287)
+.+.+|...++..+
T Consensus 182 l~~~~~~~k~i~~V 195 (248)
T COG4123 182 LKSYNLEPKRIQFV 195 (248)
T ss_pred HHhcCCCceEEEEe
Confidence 99998876666554
No 128
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0011 Score=59.82 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=64.4
Q ss_pred hhhcccccccCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcccCC-CCCe
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP-PADA 206 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p-~~D~ 206 (287)
++.+ + .....+|+|+|||. .+|. ...++.+++ -++..+...|.+++.+ .||.
T Consensus 151 l~~l-~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~ 227 (300)
T COG2813 151 LETL-P--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDL 227 (300)
T ss_pred HHhC-C--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccE
Confidence 5555 3 23334999999999 3343 334555553 2333677889998766 5999
Q ss_pred EEecccccc---CChHHHHHHHHHHHHHhcCCCCCcEEEEEee
Q 043585 207 YFFMLFFHA---FGGEDSLKILKKCREAIAGNGQRGKVLIMDI 246 (287)
Q Consensus 207 ~~l~~vlh~---~~d~~~~~iL~~~~~al~~~~~~g~lli~e~ 246 (287)
|++.=-+|. ..+.-+.+|++.+++.|++ ||.|.|+-.
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999999995 4555567999999999999 999998755
No 129
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.21 E-value=0.00041 Score=63.98 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=55.8
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCCC------------C----CCceeeeccCccc-----CC-
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTPQ------------T----ENLKYVADDMFQF-----IP- 202 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~------------~----~Ri~~~~gd~~~~-----~p- 202 (287)
+..+|||+|||. .+|+ +..|+.|++ . =...|+.+|.+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999998 4665 334444432 1 1235677887752 12
Q ss_pred ---CCCeEEecccccc-C-ChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 203 ---PADAYFFMLFFHA-F-GGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 203 ---~~D~~~l~~vlh~-~-~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
.+|+|-+...||+ | +++.+..+|+++.+.|+| ||.++..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 4899999999998 3 777888899999999999 8888753
No 130
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.19 E-value=0.001 Score=59.59 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=67.3
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC----------CCCceeeeccCccc---CC-CCCeEE
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ----------TENLKYVADDMFQF---IP-PADAYF 208 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~----------~~Ri~~~~gd~~~~---~p-~~D~~~ 208 (287)
+++.+||+||||. ++|+ |.+++.+++ .+|++++.+|.++- .+ .||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999997 3343 455555542 46899999998762 23 599999
Q ss_pred eccccccCChHH--HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 209 FMLFFHAFGGED--SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 209 l~~vlh~~~d~~--~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
+-..-+.-+... ....++.+++.|+| ||.+++. ... ..........+.+-+.++ |..+..+
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~---~~~-~~~~~~~~~~~~~tl~~~-F~~v~~~ 213 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ---SES-PWIQLELITDLKRDVKEA-FPITEYY 213 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc---CCC-cccCHHHHHHHHHHHHHH-CCCeEEE
Confidence 865433222222 35788999999999 8988875 111 110122233444555566 6665544
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.18 E-value=0.0026 Score=56.42 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=70.7
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC---CCCceeeeccCcccCC-----CCCeEEeccccc--
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ---TENLKYVADDMFQFIP-----PADAYFFMLFFH-- 214 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~---~~Ri~~~~gd~~~~~p-----~~D~~~l~~vlh-- 214 (287)
..++||+|||+ .+|. |..++.+++ ...++++.+|+++..+ .+|+|++.=-..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999 4555 666666654 2336889999987432 489988653211
Q ss_pred ----cCChH------------------HHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCc
Q 043585 215 ----AFGGE------------------DSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFT 272 (287)
Q Consensus 215 ----~~~d~------------------~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~ 272 (287)
..+++ -..++++.+.+.|+| ||++++.- -. ....+..+++++.||+
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~-~~--------~~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVET-SE--------RQAPLAVEAFARAGLI 234 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEE-Cc--------chHHHHHHHHHHCCCC
Confidence 11111 124788888899999 89888642 11 1256899999999998
Q ss_pred EEEEEecC
Q 043585 273 CCKITTMF 280 (287)
Q Consensus 273 ~~~~~~~~ 280 (287)
..-..+-.
T Consensus 235 ~~~~~~~~ 242 (251)
T TIGR03704 235 ARVASSEE 242 (251)
T ss_pred ceeeEccc
Confidence 76555443
No 132
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.11 E-value=0.0012 Score=56.67 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=54.3
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcccCC---CCCeEEecccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP---PADAYFFMLFF 213 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p---~~D~~~l~~vl 213 (287)
...+..+|||||||. .+|. |..++.+++ ..+++++.+|+.+..+ .||+|++...+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 345678999999998 2333 555555543 3469999999887433 49999998766
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
+.. .+.+.+.|+| ||++++.-
T Consensus 155 ~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 155 PEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred hhh--------hHHHHHhcCC---CcEEEEEE
Confidence 544 3456788999 99988753
No 133
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=96.95 E-value=0.00029 Score=46.55 Aligned_cols=19 Identities=68% Similarity=0.945 Sum_probs=17.5
Q ss_pred HHHHHHHHhChhhHhhhCC
Q 043585 33 MSLKGAVELGRADIIHSHG 51 (287)
Q Consensus 33 ~~L~~a~~lglfd~L~~~~ 51 (287)
++|++|+||||||+|++.+
T Consensus 1 MaLk~aveLgI~dii~~~g 19 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG 19 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT
T ss_pred CcHHHHHHcCcHHHHHHcC
Confidence 5899999999999999876
No 134
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.86 E-value=0.0054 Score=58.93 Aligned_cols=106 Identities=13% Similarity=0.217 Sum_probs=68.9
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcccCC--CCCeEEec--
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP--PADAYFFM-- 210 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p--~~D~~~l~-- 210 (287)
.....+|||+|||. .+|. +..++.+++ .++|+++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34567999999988 3444 444444432 3468999999887333 49999861
Q ss_pred ----c-------ccccCChHHH-------HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhC-CC
Q 043585 211 ----L-------FFHAFGGEDS-------LKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDA-GF 271 (287)
Q Consensus 211 ----~-------vlh~~~d~~~-------~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~a-Gf 271 (287)
. +...+++++. .++|+++.+.|+| ||+++...+.+.... ..+....+++.. +|
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~~E-----ne~~v~~~l~~~~~~ 399 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEPEE-----NELQIEAFLQRHPEF 399 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChhh-----HHHHHHHHHHhCCCC
Confidence 1 1123444433 3699999999999 999999887664321 244556666655 45
Q ss_pred cE
Q 043585 272 TC 273 (287)
Q Consensus 272 ~~ 273 (287)
..
T Consensus 400 ~~ 401 (445)
T PRK14904 400 SA 401 (445)
T ss_pred EE
Confidence 54
No 135
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.85 E-value=0.0024 Score=57.11 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=49.1
Q ss_pred CCCceeeeccCccc--CCC-CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEE
Q 043585 187 TENLKYVADDMFQF--IPP-ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLI 243 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~--~p~-~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli 243 (287)
...|.|..+|.+++ .++ +|+|+++|||=+++.+.-.+|+++.+..|+| ||.|+|
T Consensus 183 r~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~Lfl 239 (268)
T COG1352 183 RKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFL 239 (268)
T ss_pred hcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 46789999999994 344 9999999999999999999999999999999 999888
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.81 E-value=0.0076 Score=52.87 Aligned_cols=80 Identities=13% Similarity=0.227 Sum_probs=56.5
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCcccC---------CCC
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFI---------PPA 204 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~---------p~~ 204 (287)
..+.+++||||+|. .+|. |+.++.|++ .++|+++.||..+.+ +.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45788999999877 3454 455555543 579999999997721 259
Q ss_pred CeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc
Q 043585 205 DAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI 248 (287)
Q Consensus 205 D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~ 248 (287)
|++++ |-..+.-..++..+.+.|+| ||. +|+|.++
T Consensus 146 D~Vfi-----Da~k~~y~~~~~~~~~ll~~---GG~-ii~dn~l 180 (234)
T PLN02781 146 DFAFV-----DADKPNYVHFHEQLLKLVKV---GGI-IAFDNTL 180 (234)
T ss_pred CEEEE-----CCCHHHHHHHHHHHHHhcCC---CeE-EEEEcCC
Confidence 99977 33445566789999999999 775 4545543
No 137
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.81 E-value=0.0067 Score=54.09 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=81.6
Q ss_pred cCcceEEEecCcc----------------cccchhhhhcCC---------CCCCceeeeccCcccC----------CC-C
Q 043585 161 ERLGSMVDVGGGN----------------VLDLPHAVANTP---------QTENLKYVADDMFQFI----------PP-A 204 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dlp~vi~~a~---------~~~Ri~~~~gd~~~~~----------p~-~ 204 (287)
.+...||.+|+|- =+|+|+|++.-+ ..++..+++.|+.... |+ .
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4567899999999 477898876422 2678899999987321 11 3
Q ss_pred CeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-------------------C--CCCCHHHHH
Q 043585 205 DAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED-------------------E--DQRTDKEWK 263 (287)
Q Consensus 205 D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~-------------------~--~~rt~~e~~ 263 (287)
-++++-.++.+++++++.++|+.+.+...| |+. ++.|.+.+-.+. + ...+..+..
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs~-l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAP---GSR-LAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCC---CcE-EEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence 367788899999999999999999988777 555 456665431110 0 223578999
Q ss_pred HHHHhCCCcEEEE
Q 043585 264 TLFLDAGFTCCKI 276 (287)
Q Consensus 264 ~ll~~aGf~~~~~ 276 (287)
++|++.||+....
T Consensus 236 ~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 236 EWLAERGWRASEH 248 (260)
T ss_pred HHHHHCCCeeecC
Confidence 9999999998766
No 138
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.69 E-value=0.0086 Score=54.43 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=84.4
Q ss_pred ccCcceEEEecCcc----------------cccchhhhhcCC----C-----CCCceeeeccCcc-cCC------CCC--
Q 043585 160 IERLGSMVDVGGGN----------------VLDLPHAVANTP----Q-----TENLKYVADDMFQ-FIP------PAD-- 205 (287)
Q Consensus 160 ~~~~~~vlDvGgG~----------------v~Dlp~vi~~a~----~-----~~Ri~~~~gd~~~-~~p------~~D-- 205 (287)
-.+...||=+|+|- =+|+|+|++.=+ + ..++.+++.|+++ ..| +||
T Consensus 90 ~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 90 DAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred HhcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 34578999999998 478899988733 2 3489999999995 433 234
Q ss_pred ---eEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccC----CCC-CC-----------------CCCCHH
Q 043585 206 ---AYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVIN----EKE-DE-----------------DQRTDK 260 (287)
Q Consensus 206 ---~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~----~~~-~~-----------------~~rt~~ 260 (287)
++++-.+|.++++++..++|+++....+| |++++....... ... .. ......
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 68888899999999999999999999988 555554332111 111 00 234579
Q ss_pred HHHHHHHhCCCcEEEEE
Q 043585 261 EWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 261 e~~~ll~~aGf~~~~~~ 277 (287)
|+..|+.+.||..+...
T Consensus 247 e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 247 EIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHhcCEEEEecC
Confidence 99999999999987763
No 139
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.66 E-value=0.005 Score=54.89 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=65.2
Q ss_pred hhhcccccccCcceEEEecCcc-------------cccch-hhhhcCCCCCCceeeeccCcc-cCC--CCCeEEeccccc
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN-------------VLDLP-HAVANTPQTENLKYVADDMFQ-FIP--PADAYFFMLFFH 214 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~-------------v~Dlp-~vi~~a~~~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh 214 (287)
++.| ....+....++|+|||. .+|+- ..+..+++.+-......|+.. |.+ .+|..+-..++|
T Consensus 36 v~qf-l~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 36 VRQF-LDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred HHHH-HhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 5555 21234578899999999 45553 234444443322677788888 554 499999999999
Q ss_pred cC-ChHHHHHHHHHHHHHhcCCCCCcEEEEEee
Q 043585 215 AF-GGEDSLKILKKCREAIAGNGQRGKVLIMDI 246 (287)
Q Consensus 215 ~~-~d~~~~~iL~~~~~al~~~~~~g~lli~e~ 246 (287)
+| +.+...++|+.+.+.++| ||..+|.=+
T Consensus 115 hlsT~~RR~~~l~e~~r~lrp---gg~~lvyvw 144 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRP---GGNALVYVW 144 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcC---CCceEEEEe
Confidence 97 666778999999999999 998776543
No 140
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.54 E-value=0.0046 Score=55.56 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=51.1
Q ss_pred CCCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEE
Q 043585 201 IPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 201 ~p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 275 (287)
++..|+|+++++|-..++++...+++++-+.+. +.|+|+|.-.+. .-+...+.++.|.+.|+.++.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~----Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA----GFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH----HHHHHHHHHHHHhhCCCceEC
Confidence 345799999999999988888888888766654 388999866554 445677888888888887753
No 141
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.54 E-value=0.017 Score=48.83 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=60.0
Q ss_pred CCCceeeeccCcc-cCC-CCCeEEecccccc-----CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-----
Q 043585 187 TENLKYVADDMFQ-FIP-PADAYFFMLFFHA-----FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE----- 254 (287)
Q Consensus 187 ~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~-----~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~----- 254 (287)
..+++.+..+.+. .-| +.|+++....-|+ ....-+.++-+.++++|+| ||.++|.|.......+.
T Consensus 104 ~aN~e~~~~~~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~dt~~ 180 (238)
T COG4798 104 YANVEVIGKPLVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLSDTIT 180 (238)
T ss_pred hhhhhhhCCcccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChhhhhh
Confidence 3445555555444 223 2666666443333 2356678899999999999 99999999887654332
Q ss_pred -CCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 255 -DQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 255 -~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
.-++..-..+-.+.+||+...-..
T Consensus 181 ~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 181 LHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred hcccChHHHHHHHHhhcceeeeeeh
Confidence 445677888889999999865443
No 142
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.023 Score=51.18 Aligned_cols=103 Identities=26% Similarity=0.400 Sum_probs=70.3
Q ss_pred eEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcccCC-CCCeEEecc--cc----
Q 043585 165 SMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP-PADAYFFML--FF---- 213 (287)
Q Consensus 165 ~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p-~~D~~~l~~--vl---- 213 (287)
+|+|+|+|+ ..|+ |..++.|++ -.|+.++.+|.|++.+ .||++++.= +-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999 4565 677777653 2677777789999776 589877642 11
Q ss_pred --------cc-----CCh----HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCC-CcEEE
Q 043585 214 --------HA-----FGG----EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAG-FTCCK 275 (287)
Q Consensus 214 --------h~-----~~d----~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aG-f~~~~ 275 (287)
|+ +.. +-..+|++.+.+.|+| |.++++|.-... .+...+++.+.| |..+.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g~~q--------~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIGLTQ--------GEAVKALFEDTGFFEIVE 260 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEECCCc--------HHHHHHHHHhcCCceEEE
Confidence 10 111 2346788888899998 455555654443 678999999999 66555
Q ss_pred EEec
Q 043585 276 ITTM 279 (287)
Q Consensus 276 ~~~~ 279 (287)
+..-
T Consensus 261 ~~~d 264 (280)
T COG2890 261 TLKD 264 (280)
T ss_pred EEec
Confidence 5544
No 143
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.42 E-value=0.016 Score=55.48 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=70.0
Q ss_pred ccCcceEEEecCcc-----------------cccc-hhhhhcCCC-----CCCceeeeccCccc---CC--CCCeEEe--
Q 043585 160 IERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQF---IP--PADAYFF-- 209 (287)
Q Consensus 160 ~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~---~p--~~D~~~l-- 209 (287)
.....+|||+|||. .+|. +..++.+++ .-+++++.+|+.+. .+ .+|.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 44568999999998 3444 445554442 23478899999863 22 4999984
Q ss_pred --cc--cc-------ccCChHH-------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhC-C
Q 043585 210 --ML--FF-------HAFGGED-------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDA-G 270 (287)
Q Consensus 210 --~~--vl-------h~~~d~~-------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~a-G 270 (287)
+. ++ +.++.++ ..++|+++.+.|+| ||++++..+.+... -+.+++...+++. +
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~~-----Ene~~v~~~l~~~~~ 393 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSILPE-----ENEQQIKAFLARHPD 393 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCChh-----hCHHHHHHHHHhCCC
Confidence 21 11 1233332 24799999999999 99999888755431 2356777777765 6
Q ss_pred CcEEE
Q 043585 271 FTCCK 275 (287)
Q Consensus 271 f~~~~ 275 (287)
|+...
T Consensus 394 ~~~~~ 398 (427)
T PRK10901 394 AELLD 398 (427)
T ss_pred CEEec
Confidence 76443
No 144
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.40 E-value=0.0058 Score=53.25 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=55.3
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCCCCCcee-------eeccCcccC--C-CCCeEEeccccc
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQTENLKY-------VADDMFQFI--P-PADAYFFMLFFH 214 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~~~Ri~~-------~~gd~~~~~--p-~~D~~~l~~vlh 214 (287)
.+.+.++|||||+ ..|. +.+++.+++..+++. ...++.+-. + +.|+|....++|
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 3456999999999 3554 667787776444433 222222212 2 499999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEee
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDI 246 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~ 246 (287)
-|+-+ ++.+.+++.|++. ||.+.|.-.
T Consensus 112 WFdle---~fy~~~~rvLRk~--Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WFDLE---RFYKEAYRVLRKD--GGLIAVWNY 138 (261)
T ss_pred hhchH---HHHHHHHHHcCCC--CCEEEEEEc
Confidence 99887 5888889999992 556656543
No 145
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.40 E-value=0.016 Score=55.53 Aligned_cols=107 Identities=9% Similarity=0.118 Sum_probs=71.9
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcc-c----C-C-CCCeE
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-F----I-P-PADAY 207 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~----~-p-~~D~~ 207 (287)
.....+|+|+|+|. .+|. ++.++.+++ .++|+++.+|..+ + . + .+|.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 34568999999998 3444 444444432 3468999999876 2 1 1 49999
Q ss_pred Eec------cccccC-------ChHH-------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHH
Q 043585 208 FFM------LFFHAF-------GGED-------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFL 267 (287)
Q Consensus 208 ~l~------~vlh~~-------~d~~-------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~ 267 (287)
++- .+++.. ++++ -.+||+++.+.|+| ||+|+..++.+... -..+.....++
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi~~~-----Ene~~v~~~l~ 401 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTLHPA-----ENEAQIEQFLA 401 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCChh-----hHHHHHHHHHH
Confidence 972 244332 3333 36899999999999 99999888766431 12667778887
Q ss_pred hC-CCcEE
Q 043585 268 DA-GFTCC 274 (287)
Q Consensus 268 ~a-Gf~~~ 274 (287)
+. +|++.
T Consensus 402 ~~~~~~~~ 409 (434)
T PRK14901 402 RHPDWKLE 409 (434)
T ss_pred hCCCcEec
Confidence 76 67755
No 146
>PLN02672 methionine S-methyltransferase
Probab=96.37 E-value=0.014 Score=61.50 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=69.4
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC----------------------CCCceeeeccCcccCC
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ----------------------TENLKYVADDMFQFIP 202 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~----------------------~~Ri~~~~gd~~~~~p 202 (287)
..+|+|+|||+ .+|+ |..++.|+. .+||+|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999 4555 555555531 2589999999998543
Q ss_pred ----CCCeEEecc--------------cc--------ccC----------ChHH----HHHHHHHHHHHhcCCCCCcEEE
Q 043585 203 ----PADAYFFML--------------FF--------HAF----------GGED----SLKILKKCREAIAGNGQRGKVL 242 (287)
Q Consensus 203 ----~~D~~~l~~--------------vl--------h~~----------~d~~----~~~iL~~~~~al~~~~~~g~ll 242 (287)
.+|+|+..= |. |.. .+++ -.+|++.+.+.|+| ||.++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p---gG~l~ 275 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP---MGIMI 275 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC---CCEEE
Confidence 378766431 11 100 0111 16778888889999 77655
Q ss_pred EEeeccCCCCCCCCCCHHHHH-HHHHhCCCcEEEEEec
Q 043585 243 IMDIVINEKEDEDQRTDKEWK-TLFLDAGFTCCKITTM 279 (287)
Q Consensus 243 i~e~~~~~~~~~~~rt~~e~~-~ll~~aGf~~~~~~~~ 279 (287)
+|.-.. ..+... +++++.||+..+++..
T Consensus 276 -lEiG~~--------q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 276 -FNMGGR--------PGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred -EEECcc--------HHHHHHHHHHHHCCCCeeEEeee
Confidence 564322 245677 6999999999888875
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.35 E-value=0.021 Score=54.81 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=69.1
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCccc---CC-CCCeEEec
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQF---IP-PADAYFFM 210 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~---~p-~~D~~~l~ 210 (287)
..+..+|+|+|||. .+|. +..++.+++ .+.|+++.+|+.+. ++ .+|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 34567999999999 3555 444544432 24589999999763 33 49999863
Q ss_pred c------cc-------ccCChHHH-------HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhC-
Q 043585 211 L------FF-------HAFGGEDS-------LKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDA- 269 (287)
Q Consensus 211 ~------vl-------h~~~d~~~-------~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~a- 269 (287)
- ++ ..++.++. ..+|+.+.+.|+| ||+|+.....+.... .......++++.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~~E-----ne~vv~~~l~~~~ 399 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTIEKEE-----NEEVIEAFLEEHP 399 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCCChhh-----hHHHHHHHHHhCC
Confidence 1 11 12233332 4689999999999 999987665443211 244556666665
Q ss_pred CCcEEEE
Q 043585 270 GFTCCKI 276 (287)
Q Consensus 270 Gf~~~~~ 276 (287)
+|+.+.+
T Consensus 400 ~~~~~~~ 406 (444)
T PRK14902 400 EFELVPL 406 (444)
T ss_pred CcEEecc
Confidence 3665543
No 148
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.34 E-value=0.0085 Score=56.28 Aligned_cols=113 Identities=9% Similarity=0.169 Sum_probs=70.4
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCcc---cCC--CCCeEEecc
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQ---FIP--PADAYFFML 211 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~---~~p--~~D~~~l~~ 211 (287)
.....+||||||. .+|. +.+++.+.+ .++|.++.+|+.. .+| .+|.|++..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3456999999999 4554 444444431 4679999999743 345 389988753
Q ss_pred ccccCChHH-----HHHHHHHHHHHhcCCCCCcEEEEEeeccC----------CCCC-C-------CCCCHHHHHHHHHh
Q 043585 212 FFHAFGGED-----SLKILKKCREAIAGNGQRGKVLIMDIVIN----------EKED-E-------DQRTDKEWKTLFLD 268 (287)
Q Consensus 212 vlh~~~d~~-----~~~iL~~~~~al~~~~~~g~lli~e~~~~----------~~~~-~-------~~rt~~e~~~ll~~ 268 (287)
. -.|+... ...+|+.+++.|+| ||.+.+..-..+ ..+. . ..+-..+|.+-...
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~~ 276 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTDSELYFEFSLELFLKLPKAKIEIKKNAQLEVSSKYEDRWKK 276 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCC---CcEEEEEEECHHHHHHHHHHHHhCCCceeecccCCCCCCCCHHHHHHHH
Confidence 2 2354332 24789999999999 999998432211 0000 0 12233577777777
Q ss_pred CCCcEEEEE
Q 043585 269 AGFTCCKIT 277 (287)
Q Consensus 269 aGf~~~~~~ 277 (287)
.|-.+..+.
T Consensus 277 ~G~~Iy~l~ 285 (390)
T PRK14121 277 QNKDIYDLR 285 (390)
T ss_pred CCCCEEEEE
Confidence 777766554
No 149
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.30 E-value=0.0083 Score=55.16 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=52.4
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcccCC---CCCeEEec
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP---PADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p---~~D~~~l~ 210 (287)
+..+..+|||||||+ .+|. |++++.+++ .++++++.+|..+..+ .+|+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 455668999999998 2343 555555442 4679999999877432 49999987
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
..+++.+ ..+.+.|+| ||++++..
T Consensus 157 ~g~~~ip--------~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP--------ETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred CchHHhH--------HHHHHhcCC---CCEEEEEe
Confidence 6554432 345678999 99988754
No 150
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.016 Score=50.95 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=80.4
Q ss_pred HHHHHHhcccchhhH-----hhhcccccccCcceEEEecCcc------------------cccc-hhhhhcCCC------
Q 043585 137 FNQAMVNDSEMATFI-----VKDCCRTLIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------ 186 (287)
Q Consensus 137 f~~aM~~~s~~~~~~-----~~~~~~~~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------ 186 (287)
|...|...++...|. +... +.....+|+|.|-|+ .+|. ++-.+.|++
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~---gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~ 143 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARL---GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG 143 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHc---CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc
Confidence 333466655554433 2333 678889999999999 2332 334444432
Q ss_pred -CCCceeeeccCccc-CC-CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHH
Q 043585 187 -TENLKYVADDMFQF-IP-PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWK 263 (287)
Q Consensus 187 -~~Ri~~~~gd~~~~-~p-~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~ 263 (287)
.+||++..+|+.+. .+ .+|++++ |.+|+ -..|.+++++|+| ||++++.-+.++. .+...
T Consensus 144 l~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkp---gg~~~~y~P~veQ--------v~kt~ 205 (256)
T COG2519 144 LGDRVTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKP---GGVVVVYSPTVEQ--------VEKTV 205 (256)
T ss_pred cccceEEEeccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCC---CcEEEEEcCCHHH--------HHHHH
Confidence 67799999999994 44 4898876 77776 4789999999999 9999987655543 23333
Q ss_pred HHHHhCCCcEEEEEe
Q 043585 264 TLFLDAGFTCCKITT 278 (287)
Q Consensus 264 ~ll~~aGf~~~~~~~ 278 (287)
+-|++.||...+++.
T Consensus 206 ~~l~~~g~~~ie~~E 220 (256)
T COG2519 206 EALRERGFVDIEAVE 220 (256)
T ss_pred HHHHhcCccchhhhe
Confidence 445566887655443
No 151
>PLN02476 O-methyltransferase
Probab=96.07 E-value=0.027 Score=50.61 Aligned_cols=117 Identities=9% Similarity=0.048 Sum_probs=73.6
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCcccC---------CC
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFI---------PP 203 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~---------p~ 203 (287)
...+.+++|+||.+. -+|. |+..+.|++ .+||+++.||..+.+ +.
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 346789999999988 2343 444555542 679999999987732 24
Q ss_pred CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-C-C-----CCCCHHHHHHHHHhCCCcEEEE
Q 043585 204 ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-D-E-----DQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 204 ~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-~-~-----~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
||++++ |-+..+-...++.+.+.|+| ||. +|+|.++-... . + +.....++.+++.+.-=-...+
T Consensus 195 FD~VFI-----Da~K~~Y~~y~e~~l~lL~~---GGv-IV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~l 265 (278)
T PLN02476 195 YDFAFV-----DADKRMYQDYFELLLQLVRV---GGV-IVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISM 265 (278)
T ss_pred CCEEEE-----CCCHHHHHHHHHHHHHhcCC---CcE-EEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 898876 44567778899999999999 665 55566553221 1 1 1223467766666543233444
Q ss_pred EecCCccc
Q 043585 277 TTMFGLKS 284 (287)
Q Consensus 277 ~~~~~~~s 284 (287)
.|+.....
T Consensus 266 lPigDGl~ 273 (278)
T PLN02476 266 VPIGDGMT 273 (278)
T ss_pred EEeCCeeE
Confidence 46643333
No 152
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.02 Score=49.17 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=57.9
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcccCC---CCCeEEecccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP---PADAYFFMLFF 213 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p---~~D~~~l~~vl 213 (287)
+.+...+||+||+|+ -++. ++..+.|++ ..+|.++.||-..-.| .||.|+..--.
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 577889999999998 2332 555566653 5569999999999655 49999998877
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEee
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDI 246 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~ 246 (287)
-..++ .++ +.|++ ||++++-..
T Consensus 149 ~~vP~----~Ll----~QL~~---gGrlv~PvG 170 (209)
T COG2518 149 PEVPE----ALL----DQLKP---GGRLVIPVG 170 (209)
T ss_pred CCCCH----HHH----Hhccc---CCEEEEEEc
Confidence 66665 244 45899 999998765
No 153
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.88 E-value=0.039 Score=52.85 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=67.3
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcc-c--CC-CCCeEEe-
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-F--IP-PADAYFF- 209 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~--~p-~~D~~~l- 209 (287)
.....+|||+|+|. .+|+ +..++.+++ .++++++.+|... + .+ .||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45667999999998 3454 444444432 3458899999876 2 12 4999986
Q ss_pred ---c--ccc-------ccCChHHH-------HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhC-
Q 043585 210 ---M--LFF-------HAFGGEDS-------LKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDA- 269 (287)
Q Consensus 210 ---~--~vl-------h~~~d~~~-------~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~a- 269 (287)
+ .++ ..++.++. .+||+++++.|+| ||.++...+.+.... ..+..+..|+..
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~eE-----ne~vv~~fl~~~~ 386 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTKEE-----NTEVVKRFVYEQK 386 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCChhh-----CHHHHHHHHHhCC
Confidence 1 122 23333322 6789999999999 999888777654322 345555555543
Q ss_pred CCcEE
Q 043585 270 GFTCC 274 (287)
Q Consensus 270 Gf~~~ 274 (287)
+|+..
T Consensus 387 ~~~~~ 391 (431)
T PRK14903 387 DAEVI 391 (431)
T ss_pred CcEEe
Confidence 55543
No 154
>PHA03412 putative methyltransferase; Provisional
Probab=95.88 E-value=0.045 Score=48.00 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred cceEEEecCcc--------------------cccc-hhhhhcCCC-CCCceeeeccCcc-cCC-CCCeEEeccccccCCh
Q 043585 163 LGSMVDVGGGN--------------------VLDL-PHAVANTPQ-TENLKYVADDMFQ-FIP-PADAYFFMLFFHAFGG 218 (287)
Q Consensus 163 ~~~vlDvGgG~--------------------v~Dl-p~vi~~a~~-~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~~~d 218 (287)
..+|||+|||+ .+|+ |..++.|++ ..++.++.+|+.. +.. .+|+|+..=-.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 57999999999 1222 333444443 5678999999987 333 4999988765553221
Q ss_pred ----------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC--CCC-----CCCCHHHHHHHHHhCCCcE
Q 043585 219 ----------EDSLKILKKCREAIAGNGQRGKVLIMDIVINEK--EDE-----DQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 219 ----------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~--~~~-----~~rt~~e~~~ll~~aGf~~ 273 (287)
.-..++++++.+.+++ |.+++=-.+++=. +.+ ..-+-.++.+++++.|+..
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFIIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEeCcccccCcccCccceeeccCcccHHHHHHHHhcCeee
Confidence 1235688888886665 6663322222211 111 2235678999999999864
No 155
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.86 E-value=0.013 Score=48.41 Aligned_cols=67 Identities=13% Similarity=0.257 Sum_probs=43.5
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC----CCCceeeeccCcc-cCCC--CCeEEecccccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ----TENLKYVADDMFQ-FIPP--ADAYFFMLFFHA 215 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~-~~p~--~D~~~l~~vlh~ 215 (287)
+.....++||||||. .+|. +.+++.+++ .++++++.+|+.+ +.+. +|.++ ++..++
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi-~n~Py~ 88 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV-GNLPYN 88 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE-ECCCcc
Confidence 456667999999998 4554 344444432 4689999999998 5553 77665 455555
Q ss_pred CChHHHHHHHH
Q 043585 216 FGGEDSLKILK 226 (287)
Q Consensus 216 ~~d~~~~~iL~ 226 (287)
.+.+...++++
T Consensus 89 ~~~~~i~~~l~ 99 (169)
T smart00650 89 ISTPILFKLLE 99 (169)
T ss_pred cHHHHHHHHHh
Confidence 55544444443
No 156
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.84 E-value=0.0084 Score=51.54 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=47.4
Q ss_pred cccCcceEEEecCcc-----------------cccc-hhhhhcCC---------------CCCCceeeeccCccc-----
Q 043585 159 LIERLGSMVDVGGGN-----------------VLDL-PHAVANTP---------------QTENLKYVADDMFQF----- 200 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~---------------~~~Ri~~~~gd~~~~----- 200 (287)
.......++|+|+|. ++++ |...+.+. ...++++..|||.++
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 456678999999999 2332 22222221 256789999999983
Q ss_pred -CCCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC
Q 043585 201 -IPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK 251 (287)
Q Consensus 201 -~p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~ 251 (287)
+.++|+|++.+.+ |+++-..+| ++....|++ |.+|+....+.+..
T Consensus 119 ~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 119 IWSDADVVFVNNTC--FDPDLNLAL-AELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp HGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-T---T-EEEESS-SS-TT
T ss_pred hhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCC---CCEEEECCCcCCCC
Confidence 1369999999975 666655555 666688998 88887766666554
No 157
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.82 E-value=0.0065 Score=52.39 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=50.7
Q ss_pred cccCcceEEEecCcc------------------ccc-chhhhhcCCC------CCCceeeeccCcccCC---CCCeEEec
Q 043585 159 LIERLGSMVDVGGGN------------------VLD-LPHAVANTPQ------TENLKYVADDMFQFIP---PADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~D-lp~vi~~a~~------~~Ri~~~~gd~~~~~p---~~D~~~l~ 210 (287)
+.....+|||||+|+ .+| .|.+.+.|++ ..+|+++.||.....| .||.|++.
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence 567789999999998 223 2666666653 5689999999988544 49999998
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
.-....+. .+ .+.|++ ||++++-
T Consensus 149 ~a~~~ip~----~l----~~qL~~---gGrLV~p 171 (209)
T PF01135_consen 149 AAVPEIPE----AL----LEQLKP---GGRLVAP 171 (209)
T ss_dssp SBBSS--H----HH----HHTEEE---EEEEEEE
T ss_pred eccchHHH----HH----HHhcCC---CcEEEEE
Confidence 87754443 23 355899 9999874
No 158
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.80 E-value=0.044 Score=52.33 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=64.8
Q ss_pred ccCcceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceeeeccCccc-C--C--CCCeEEe
Q 043585 160 IERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQF-I--P--PADAYFF 209 (287)
Q Consensus 160 ~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~-~--p--~~D~~~l 209 (287)
.....+|+|+|+|. .+|. +..++.+++ ..++++..+|.... . + .+|.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 44568999999998 3444 444444432 22344477777652 2 2 4999986
Q ss_pred ------ccccccCCh-------HH-------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhC
Q 043585 210 ------MLFFHAFGG-------ED-------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDA 269 (287)
Q Consensus 210 ------~~vlh~~~d-------~~-------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~a 269 (287)
..+++..++ ++ ..++|+++++.|+| ||+|++.++-+.... +.+....++++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~E-----ne~~v~~~l~~~ 387 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPEE-----NSEQIKAFLQEH 387 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChhh-----CHHHHHHHHHhC
Confidence 235554333 22 36899999999999 999999988775322 244555556554
No 159
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.66 E-value=0.03 Score=49.96 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=58.4
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC------CCCceeeeccCcc-c--CCCCCeEEec
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ------TENLKYVADDMFQ-F--IPPADAYFFM 210 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~-~--~p~~D~~~l~ 210 (287)
+.....+|||+|+|. .+|. +..++.+++ ..+|++..+|... + .+.+|+|++-
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 345567999999998 2444 444444332 3568888888755 2 2359999862
Q ss_pred ----c--c-------cccCChHHH-------HHHHHHHHHHhcCCCCCcEEEEEeeccC
Q 043585 211 ----L--F-------FHAFGGEDS-------LKILKKCREAIAGNGQRGKVLIMDIVIN 249 (287)
Q Consensus 211 ----~--v-------lh~~~d~~~-------~~iL~~~~~al~~~~~~g~lli~e~~~~ 249 (287)
. + ...|++++. .+||+++.+.|+| ||+|+.....+.
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 1 1 223555544 4699999999999 999987776554
No 160
>PLN02823 spermine synthase
Probab=95.56 E-value=0.018 Score=53.32 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=54.1
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC----------CCCceeeeccCcccC---C-CCCeEE
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ----------TENLKYVADDMFQFI---P-PADAYF 208 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~----------~~Ri~~~~gd~~~~~---p-~~D~~~ 208 (287)
.++++||-||||. ++|+ |.|++.+++ .+|++++.+|.+.-+ + .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3567999999998 4565 777777763 589999999988832 2 499998
Q ss_pred eccccccCChHH-----HHHHHH-HHHHHhcCCCCCcEEEE
Q 043585 209 FMLFFHAFGGED-----SLKILK-KCREAIAGNGQRGKVLI 243 (287)
Q Consensus 209 l~~vlh~~~d~~-----~~~iL~-~~~~al~~~~~~g~lli 243 (287)
+-- ...++... ....++ .+++.|+| ||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 752 11111000 135777 78899999 786554
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.49 E-value=0.017 Score=48.24 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=52.2
Q ss_pred cccCcceEEEecCcc-----------------cccchhhhhcCCC---------CCCceeeeccCcccC------C-CCC
Q 043585 159 LIERLGSMVDVGGGN-----------------VLDLPHAVANTPQ---------TENLKYVADDMFQFI------P-PAD 205 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-----------------v~Dlp~vi~~a~~---------~~Ri~~~~gd~~~~~------p-~~D 205 (287)
...+..+||++|+|. +-|.+++++..+. ..++++...|.-++. + .+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345678999999998 4566666554331 577888888775521 2 499
Q ss_pred eEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc
Q 043585 206 AYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI 248 (287)
Q Consensus 206 ~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~ 248 (287)
+|+.+.|+++ ++....+++.+.+.|++ +|.+++.-...
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 9999999986 46678999999999999 77777766554
No 162
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.023 Score=51.25 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=57.4
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC----------CCCceeeeccCccc---CC-CCCeEE
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ----------TENLKYVADDMFQF---IP-PADAYF 208 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~----------~~Ri~~~~gd~~~~---~p-~~D~~~ 208 (287)
+++++||=||||. ++|+ |.|++.+++ .+|++.+.+|.++- .+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4457999999998 5665 778888764 59999999999883 34 499987
Q ss_pred eccccccCChH---HHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 209 FMLFFHAFGGE---DSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 209 l~~vlh~~~d~---~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
+=..=.. ... --...++.|+++|++ +|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 6432221 110 114799999999999 7766664
No 163
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.019 Score=49.16 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred ccCcceEEEecCcc-------------------cccc-hhhhhcCCC----------------CCCceeeeccCcccCC-
Q 043585 160 IERLGSMVDVGGGN-------------------VLDL-PHAVANTPQ----------------TENLKYVADDMFQFIP- 202 (287)
Q Consensus 160 ~~~~~~vlDvGgG~-------------------v~Dl-p~vi~~a~~----------------~~Ri~~~~gd~~~~~p- 202 (287)
+....+.||||+|+ .+|+ |++++-+++ ..++.++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 66788999999999 3444 666555431 6788999999988433
Q ss_pred --CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 203 --PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 203 --~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
+||.|... ..+.++.++.-+-|++ ||+++|-
T Consensus 160 ~a~YDaIhvG--------Aaa~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVG--------AAASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred cCCcceEEEc--------cCccccHHHHHHhhcc---CCeEEEe
Confidence 59999776 2334677777788999 9999984
No 164
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.41 E-value=0.11 Score=46.40 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCceeeeccCccc--CC----CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-------
Q 043585 187 TENLKYVADDMFQF--IP----PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED------- 253 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~--~p----~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~------- 253 (287)
.++++..+|||.+- .+ .+|+|+...++.- -++....|+.+++.|+| ||..+=+-+.+=....
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~~~~~~~~~~ 217 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKP---GGYWINFGPLLYHFEPMSIPNEM 217 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhcc---CCEEEecCCccccCCCCCCCCCc
Confidence 78899999999993 33 3899988866643 44578999999999999 8855555554411111
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 254 EDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 254 ~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
.-+.|.+|++.+.+..||++++...
T Consensus 218 sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 218 SVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1778999999999999999875544
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.34 E-value=0.026 Score=54.28 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=62.5
Q ss_pred ChhhhhccCchHHHHHHHHHHhcccchhhHhhhcccccccCcceEEEecCcc--cccc--------------------hh
Q 043585 122 KHWEIMSQNPRLSQRFNQAMVNDSEMATFIVKDCCRTLIERLGSMVDVGGGN--VLDL--------------------PH 179 (287)
Q Consensus 122 ~~~e~~~~~~~~~~~f~~aM~~~s~~~~~~~~~~~~~~~~~~~~vlDvGgG~--v~Dl--------------------p~ 179 (287)
..||.+++||-.-..|.+|+...- ....+.- . ...+...|+|||+|+ +.+. |.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al---~D~~~~~-~-~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEAL---KDRVRKN-S-YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHH---HHHHTTS---SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHH---Hhhhhhc-c-ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 578899999988888888875411 1112111 0 111467899999999 1111 21
Q ss_pred hhhcC----C--C-CCCceeeeccCcc-cCC-CCCeEEeccccccC-ChHHHHHHHHHHHHHhcCCCCCcEEE
Q 043585 180 AVANT----P--Q-TENLKYVADDMFQ-FIP-PADAYFFMLFFHAF-GGEDSLKILKKCREAIAGNGQRGKVL 242 (287)
Q Consensus 180 vi~~a----~--~-~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~~-~d~~~~~iL~~~~~al~~~~~~g~ll 242 (287)
.+... + . .++|+++.+|+.+ ..| .+|+++.=.. -.+ ..|-....|..+.+-|+| +|.++
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp---~Gi~I 294 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKP---DGIMI 294 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEE---EEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCC---CCEEe
Confidence 11111 1 1 6899999999999 667 4999864333 222 223334457777788999 66443
No 166
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.27 E-value=0.04 Score=47.56 Aligned_cols=108 Identities=14% Similarity=0.216 Sum_probs=66.4
Q ss_pred CcceEEEecCcc---------------cccc-hhhhhcCCCCCC--ceeeeccCcccCC----CCCeEEecc----ccc-
Q 043585 162 RLGSMVDVGGGN---------------VLDL-PHAVANTPQTEN--LKYVADDMFQFIP----PADAYFFML----FFH- 214 (287)
Q Consensus 162 ~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~~~R--i~~~~gd~~~~~p----~~D~~~l~~----vlh- 214 (287)
...-|||||||+ .+|. |++++.|.+ .. -.++-+|+=+.+| .||.++... .+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 478999999999 6776 889998875 22 3477788877443 388766443 223
Q ss_pred ----cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 215 ----AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 215 ----~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
+.+......++..++.+|++ |++-+.- +.+++ +-+.+-+.+-...|||.---+...
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Q--fYpen----~~q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQ--FYPEN----EAQIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhcc---CceeEEE--ecccc----hHHHHHHHHHHHhhccCCceeeec
Confidence 22334455678889999999 7876652 23331 112333344444568764434333
No 167
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.21 E-value=0.067 Score=54.43 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=70.6
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCC-------C-CCceeeeccCcccC---C-CCCeEEecc
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------T-ENLKYVADDMFQFI---P-PADAYFFML 211 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~-~Ri~~~~gd~~~~~---p-~~D~~~l~~ 211 (287)
.+.++|||+|||+ .+|. +..++.+++ . +|++++.+|.++.+ + .||+|++-=
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3468999999999 4665 556666553 2 58999999988732 3 599998831
Q ss_pred c-------c-ccC-ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 212 F-------F-HAF-GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 212 v-------l-h~~-~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
- . ..+ ...+-..+++.+.+.|+| ||.+++.. .... ...-.+.+.++|+++..+...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~~-~~~~--------~~~~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFSN-NKRG--------FKMDEEGLAKLGLKAEEITAK 681 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEEe-CCcc--------CChhHHHHHhCCCeEEEEecC
Confidence 0 0 011 122346788999999999 88776643 2211 112277888999988777644
No 168
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=94.95 E-value=0.031 Score=51.05 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=52.1
Q ss_pred cccCcceEEEecCcc----------------cccchhhhhcCCC-------CCCceeeeccCcc-cCCC-CCeEEecccc
Q 043585 159 LIERLGSMVDVGGGN----------------VLDLPHAVANTPQ-------TENLKYVADDMFQ-FIPP-ADAYFFMLFF 213 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~----------------v~Dlp~vi~~a~~-------~~Ri~~~~gd~~~-~~p~-~D~~~l~~vl 213 (287)
||.+ +.|||||+|+ -++-.++.+.|++ .+||++++|-+-+ ++|. +|+++.--.=
T Consensus 175 DF~~-kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 175 DFQD-KIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred ccCC-cEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 5544 6899999999 2222333333332 8999999999988 7895 9988754433
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEE
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVL 242 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~ll 242 (287)
...-.|....---.+++-|+| .|+.+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCC---CCccc
Confidence 333344333333346788999 77765
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.86 E-value=0.014 Score=50.17 Aligned_cols=116 Identities=16% Similarity=0.289 Sum_probs=70.8
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCcccCC---------CC
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFIP---------PA 204 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~p---------~~ 204 (287)
..++++||.||.+. .+|. |+..+.|++ .+||+++.||..+.++ +|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45789999999988 2333 444444432 6899999999987321 48
Q ss_pred CeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC--CC-----CCCCHHHHHHHHHhC-CCcEEEE
Q 043585 205 DAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE--DE-----DQRTDKEWKTLFLDA-GFTCCKI 276 (287)
Q Consensus 205 D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~--~~-----~~rt~~e~~~ll~~a-Gf~~~~~ 276 (287)
|+|++ |-...+-...++.+.+.|+| |.++|+|.++-... .+ ......++.+++.+- .|.. .+
T Consensus 123 D~VFi-----Da~K~~y~~y~~~~~~ll~~----ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~-~l 192 (205)
T PF01596_consen 123 DFVFI-----DADKRNYLEYFEKALPLLRP----GGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFET-VL 192 (205)
T ss_dssp EEEEE-----ESTGGGHHHHHHHHHHHEEE----EEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEE-EE
T ss_pred eEEEE-----cccccchhhHHHHHhhhccC----CeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeE-EE
Confidence 99887 44567778899999999999 56666676653211 11 111245666666654 4433 35
Q ss_pred EecCCccce
Q 043585 277 TTMFGLKSL 285 (287)
Q Consensus 277 ~~~~~~~s~ 285 (287)
.|+....+|
T Consensus 193 lpigdGl~l 201 (205)
T PF01596_consen 193 LPIGDGLTL 201 (205)
T ss_dssp ECSTTEEEE
T ss_pred EEeCCeeEE
Confidence 566544433
No 170
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.80 E-value=0.041 Score=49.35 Aligned_cols=109 Identities=13% Similarity=0.203 Sum_probs=55.5
Q ss_pred CcceEEEecCcc-------------------cccc-hhhhhcCCC--------CCCceeeeccCcc-c--CCCCCeEEec
Q 043585 162 RLGSMVDVGGGN-------------------VLDL-PHAVANTPQ--------TENLKYVADDMFQ-F--IPPADAYFFM 210 (287)
Q Consensus 162 ~~~~vlDvGgG~-------------------v~Dl-p~vi~~a~~--------~~Ri~~~~gd~~~-~--~p~~D~~~l~ 210 (287)
.+++|+=||+|. .+|. |+.++.+++ ..|++|+.+|..+ + +..||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999998 4565 555555532 7899999999876 2 3369999988
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-CCCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-DQRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-~~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
-.. ..+.++-.+||+++.+.|+| |++|++- ...+-. -.|..-+-. +--||.+..+.+..+
T Consensus 200 alV-g~~~e~K~~Il~~l~~~m~~---ga~l~~R----sa~GlR~~LYp~vd~~---~l~gf~~~~~~hP~~ 260 (276)
T PF03059_consen 200 ALV-GMDAEPKEEILEHLAKHMAP---GARLVVR----SAHGLRSFLYPVVDPE---DLRGFEVLAVVHPTD 260 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-T---TSEEEEE----E--GGGGGSS----TG---GGTTEEEEEEE---T
T ss_pred hhc-ccccchHHHHHHHHHhhCCC---CcEEEEe----cchhhHHHcCCCCChH---HCCCeEEEEEECCCC
Confidence 766 44445667999999999999 7766653 111111 222221111 112999987776644
No 171
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.80 E-value=0.052 Score=52.15 Aligned_cols=102 Identities=9% Similarity=0.090 Sum_probs=62.2
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCccc-----CC--CCCeEEecc
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQF-----IP--PADAYFFML 211 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~-----~p--~~D~~~l~~ 211 (287)
.+..+|||+|||+ .+|. +++++.|++ .++++++.+|+.+. ++ .+|+|++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~-- 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL-- 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE--
Confidence 4557999999999 4665 666666653 35799999998752 21 3898865
Q ss_pred ccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 212 FFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 212 vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
|-+-..+..+++.+.+ ++| ++-++| ..-... ..|..+. |.+.||++.++.++.
T Consensus 374 ---dPPr~g~~~~~~~l~~-~~~---~~ivyv-SCnp~t----laRDl~~----L~~~gY~l~~i~~~D 426 (443)
T PRK13168 374 ---DPPRAGAAEVMQALAK-LGP---KRIVYV-SCNPAT----LARDAGV----LVEAGYRLKRAGMLD 426 (443)
T ss_pred ---CcCCcChHHHHHHHHh-cCC---CeEEEE-EeChHH----hhccHHH----HhhCCcEEEEEEEec
Confidence 2222222344555544 577 444444 321111 3444443 357899999999874
No 172
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=94.69 E-value=0.047 Score=48.25 Aligned_cols=103 Identities=14% Similarity=0.220 Sum_probs=66.1
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCC-----CCCe
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIP-----PADA 206 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p-----~~D~ 206 (287)
+...+.+||+.|-|+ -+|. ++-.+.|++ .++|++..+|+.+ -++ .+|+
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 677889999999999 3443 333333432 6789999999975 232 3788
Q ss_pred EEeccccccCChHHHHHHHHHHHHHh-cCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 207 YFFMLFFHAFGGEDSLKILKKCREAI-AGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 207 ~~l~~vlh~~~d~~~~~iL~~~~~al-~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
|++ |.+++- ..+..++++| ++ ||++++.-+.+.. .....+-|++.||..+++..+
T Consensus 117 vfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~ieQ--------v~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 117 VFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCIEQ--------VQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp EEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSHHH--------HHHHHHHHHHTTEEEEEEEEE
T ss_pred EEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCHHH--------HHHHHHHHHHCCCeeeEEEEE
Confidence 766 776664 5788899999 88 9999998655543 344455566789987766543
No 173
>PRK00536 speE spermidine synthase; Provisional
Probab=94.50 E-value=0.091 Score=46.88 Aligned_cols=102 Identities=8% Similarity=0.044 Sum_probs=61.6
Q ss_pred cCcceEEEecCcc---------------cccc-hhhhhcCCC----------CCCceeeeccCcccC-CCCCeEEecccc
Q 043585 161 ERLGSMVDVGGGN---------------VLDL-PHAVANTPQ----------TENLKYVADDMFQFI-PPADAYFFMLFF 213 (287)
Q Consensus 161 ~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~----------~~Ri~~~~gd~~~~~-p~~D~~~l~~vl 213 (287)
+++++||=||||. .+|+ +.|++.+++ .+|++++.. +.+.. ..||+|+.=..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs~- 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQE- 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcCC-
Confidence 5689999999999 4555 567766653 789998862 22222 25999986532
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
.+ ....+.|+++|+| ||.++.-- - .+--.........+-+++ .|..+..+.
T Consensus 149 ---~~---~~fy~~~~~~L~~---~Gi~v~Qs-~---sp~~~~~~~~~i~~~l~~-~F~~v~~y~ 199 (262)
T PRK00536 149 ---PD---IHKIDGLKRMLKE---DGVFISVA-K---HPLLEHVSMQNALKNMGD-FFSIAMPFV 199 (262)
T ss_pred ---CC---hHHHHHHHHhcCC---CcEEEECC-C---CcccCHHHHHHHHHHHHh-hCCceEEEE
Confidence 22 3567889999999 77665521 1 110011122333444444 688665553
No 174
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.44 E-value=0.017 Score=49.36 Aligned_cols=114 Identities=17% Similarity=0.254 Sum_probs=70.7
Q ss_pred CcceEEEecCcc--c--ccchhhhhcC-CC-----CCCceeeeccCcccC---C---CCCeEEeccccccCChHHHHHHH
Q 043585 162 RLGSMVDVGGGN--V--LDLPHAVANT-PQ-----TENLKYVADDMFQFI---P---PADAYFFMLFFHAFGGEDSLKIL 225 (287)
Q Consensus 162 ~~~~vlDvGgG~--v--~Dlp~vi~~a-~~-----~~Ri~~~~gd~~~~~---p---~~D~~~l~~vlh~~~d~~~~~iL 225 (287)
...++||+|.|. + .=.|.+-++- .+ .+|.+....+..... . ++|+|.+-++|..-.+. -++|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~kLL 189 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--FKLL 189 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcCh--HHHH
Confidence 467999999999 1 1113222221 11 344544444444421 1 48999999999765544 5899
Q ss_pred HHHHHHhcCCCCCcEEEEEeeccCC--------CCCC---------CCCCHHH----HHHHHHhCCCcEEEEEecC
Q 043585 226 KKCREAIAGNGQRGKVLIMDIVINE--------KEDE---------DQRTDKE----WKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 226 ~~~~~al~~~~~~g~lli~e~~~~~--------~~~~---------~~rt~~e----~~~ll~~aGf~~~~~~~~~ 280 (287)
+.++.+++|. .|++++. -++|- .+.+ ..|+.+| +.++|++|||++....+.|
T Consensus 190 ~Di~~vl~ps--ngrviva-LVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 190 EDIHLVLAPS--NGRVIVA-LVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred HHHHHHhccC--CCcEEEE-EEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 9999999994 6887753 22221 1111 5566655 4588999999988766553
No 175
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=0.025 Score=46.14 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=36.5
Q ss_pred CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 203 PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 203 ~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
+.|+|+..|||-+++-++....|+.|++.|+| ||.|-|.
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriA 85 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIA 85 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEE
Confidence 49999999999999999999999999999999 9988775
No 176
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.26 Score=41.59 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=69.5
Q ss_pred ccCcceEEEecCcc----------------cccc-hhhhhcCCC-----CCCceeeeccCcccCCCCCeEEeccccccCC
Q 043585 160 IERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQFIPPADAYFFMLFFHAFG 217 (287)
Q Consensus 160 ~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~~p~~D~~~l~~vlh~~~ 217 (287)
.-..++|+|+|||+ .+|. |+.++.+++ ..+|.|+..|.-+.-..+|.+++.=-+--|-
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence 34567999999999 4666 777777764 6789999999987544688888876655542
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
..-=..+|.+ |+.- .-.++-+. +.-|.+-+.+..+++|+++..++.
T Consensus 123 rhaDr~Fl~~---Ale~---s~vVYsiH---------~a~~~~f~~~~~~~~G~~v~~~~~ 168 (198)
T COG2263 123 RHADRPFLLK---ALEI---SDVVYSIH---------KAGSRDFVEKFAADLGGTVTHIER 168 (198)
T ss_pred ccCCHHHHHH---HHHh---hheEEEee---------ccccHHHHHHHHHhcCCeEEEEEE
Confidence 2111456664 4454 32344322 222677888999999998876643
No 177
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.38 E-value=0.12 Score=45.68 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=67.0
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC----------CCCceeeeccCcc---cC-C-CCCeE
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ----------TENLKYVADDMFQ---FI-P-PADAY 207 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~----------~~Ri~~~~gd~~~---~~-p-~~D~~ 207 (287)
+++++||=||||. ++|+ |.|++.+++ .+|++.+.+|... .. . .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4678999999987 5565 777777763 5799999999876 22 3 49998
Q ss_pred EeccccccCChH--HHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEE
Q 043585 208 FFMLFFHAFGGE--DSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 208 ~l~~vlh~~~d~--~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
++=-.=-..+.. -....++.+++.|+| +|.+++.-..... .......+.+.++++.. .+..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F~-~v~~ 217 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQAGSPFL----HPELFKSILKTLRSVFP-QVKP 217 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEEEETTT----THHHHHHHHHHHHTTSS-EEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEccCccc----chHHHHHHHHHHHHhCC-ceEE
Confidence 763221111111 124689999999999 7877665421111 22334556667777755 4433
No 178
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.11 Score=45.67 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=58.3
Q ss_pred cCcceEEEecCcc------c---------------ccc-hhhhhcC-----CCCCC--ceeeeccCccc---CCC---CC
Q 043585 161 ERLGSMVDVGGGN------V---------------LDL-PHAVANT-----PQTEN--LKYVADDMFQF---IPP---AD 205 (287)
Q Consensus 161 ~~~~~vlDvGgG~------v---------------~Dl-p~vi~~a-----~~~~R--i~~~~gd~~~~---~p~---~D 205 (287)
.+..+++|+|.|+ + +|. ..+++.. ++.+. |.-++||+..+ .|+ ==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 4578999999999 2 333 1222221 12444 44566787664 342 23
Q ss_pred eEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEE-EeeccC
Q 043585 206 AYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLI-MDIVIN 249 (287)
Q Consensus 206 ~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli-~e~~~~ 249 (287)
.+++...|-++++++|..+|.+++.+|+| |-.+++ +|-+-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~k~ 198 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLRKP 198 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEeccccCH
Confidence 57788899999999999999999999999 666655 555433
No 179
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.05 E-value=0.22 Score=42.33 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=60.7
Q ss_pred cccCcceEEEecCcc----------------cccc-hhhhhcCC---C--CCCceeeeccCcccCCCCCeEEeccccccC
Q 043585 159 LIERLGSMVDVGGGN----------------VLDL-PHAVANTP---Q--TENLKYVADDMFQFIPPADAYFFMLFFHAF 216 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~---~--~~Ri~~~~gd~~~~~p~~D~~~l~~vlh~~ 216 (287)
..-..++|||.|.|+ --|. |-.+..++ + .-.|.+...|...+-|.+|+++.+.++.+-
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 456789999999999 2232 43333332 1 455777777877744469999999999877
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE 252 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~ 252 (287)
+.. .+++. +...+..+ |..++|-|+-.+.-+
T Consensus 156 ~~a--~~l~~-~~~~l~~~--g~~vlvgdp~R~~lp 186 (218)
T COG3897 156 TEA--DRLIP-WKDRLAEA--GAAVLVGDPGRAYLP 186 (218)
T ss_pred hHH--HHHHH-HHHHHHhC--CCEEEEeCCCCCCCc
Confidence 664 47777 66777762 667777776665444
No 180
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.04 E-value=0.24 Score=46.88 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=63.7
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCC-------C-CCceeeeccCcccC------C-CCCeEE
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------T-ENLKYVADDMFQFI------P-PADAYF 208 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~-~Ri~~~~gd~~~~~------p-~~D~~~ 208 (287)
.+..+|||+|||+ .+|. +..++.+++ . ++++++.+|+++.. . .||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4568999999998 4554 445555442 2 48999999998832 2 499998
Q ss_pred eccccccCCh-------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhC
Q 043585 209 FMLFFHAFGG-------EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDA 269 (287)
Q Consensus 209 l~~vlh~~~d-------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~a 269 (287)
+-=---.-+. ..-..+++.+.+.|+| ||.|+.+.+. ..-+.+++.+++.+|
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~scs-------~~~~~~~f~~~v~~a 356 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSCS-------GLMTSDLFQKIIADA 356 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeCC-------CcCCHHHHHHHHHHH
Confidence 6522100111 1234566778899999 8988886522 233567787777655
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=93.91 E-value=0.092 Score=46.44 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=44.2
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC----CCCceeeeccCcc-cCCCCC--eEEecccccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ----TENLKYVADDMFQ-FIPPAD--AYFFMLFFHA 215 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~-~~p~~D--~~~l~~vlh~ 215 (287)
...+..+|||||||. .+|. +..++.++. .++++++.+|+.+ +++.+| .+++++.-++
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQLKVVSNLPYN 105 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCcceEEEcCChh
Confidence 456678999999999 3444 344444332 4789999999988 555455 5666777666
Q ss_pred CChHHHHHHHHHHH
Q 043585 216 FGGEDSLKILKKCR 229 (287)
Q Consensus 216 ~~d~~~~~iL~~~~ 229 (287)
++.+ ++.++.
T Consensus 106 i~~~----il~~ll 115 (253)
T TIGR00755 106 ISSP----LIFKLL 115 (253)
T ss_pred hHHH----HHHHHh
Confidence 6654 445443
No 182
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.79 E-value=0.042 Score=52.80 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.6
Q ss_pred cCCC--CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc
Q 043585 200 FIPP--ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI 248 (287)
Q Consensus 200 ~~p~--~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~ 248 (287)
|+|. +|++-+++++..|.+.+. .+|-.+-+.|+| ||-++..-+-+
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~g-~~l~evdRvLRp---GGyfv~S~ppv 222 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPNDG-FLLFEVDRVLRP---GGYFVLSGPPV 222 (506)
T ss_pred cCCccchhhhhcccccccchhccc-ceeehhhhhhcc---CceEEecCCcc
Confidence 5663 999999999999998875 588889999999 88777654433
No 183
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=93.70 E-value=0.1 Score=46.33 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=41.6
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC----CCCceeeeccCcc-cCCCCCeEEeccccccCC
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ----TENLKYVADDMFQ-FIPPADAYFFMLFFHAFG 217 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~-~~p~~D~~~l~~vlh~~~ 217 (287)
...+..+|||||||. .+|. +.+++.+++ .++++++.+|+.+ ++|.+|.|+. +.-++.+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~-NlPy~i~ 104 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVS-NLPYQIS 104 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEE-cCCcccC
Confidence 445678999999999 4555 444444432 4789999999998 6667886654 5555555
Q ss_pred hH
Q 043585 218 GE 219 (287)
Q Consensus 218 d~ 219 (287)
.+
T Consensus 105 s~ 106 (258)
T PRK14896 105 SP 106 (258)
T ss_pred cH
Confidence 43
No 184
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=93.66 E-value=0.35 Score=42.26 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=74.6
Q ss_pred ccCcceEEEecCcc--------------c---ccchhhhhcCCC--------CCCceeeeccCccc---CC--CCCeEEe
Q 043585 160 IERLGSMVDVGGGN--------------V---LDLPHAVANTPQ--------TENLKYVADDMFQF---IP--PADAYFF 209 (287)
Q Consensus 160 ~~~~~~vlDvGgG~--------------v---~Dlp~vi~~a~~--------~~Ri~~~~gd~~~~---~p--~~D~~~l 209 (287)
.....+|+|.-+|- | ---|.|++.|.- ..+|+.+.||.++- ++ .+|++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI-- 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI-- 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE--
Confidence 45678999998877 2 222778888762 55899999999984 44 27775
Q ss_pred ccccccCC------hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-CC-CCHHHHHHHHHhCCCcEEEEEec
Q 043585 210 MLFFHAFG------GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-DQ-RTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 210 ~~vlh~~~------d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-~~-rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
+||-+ .--...+-+++++.|+| ||+++=. +.+++.. +- --.....+.|+++||..++....
T Consensus 210 ---iHDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHY---vG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 210 ---IHDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHY---VGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred ---eeCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEE---eCCCCcccccCChhHHHHHHHHhcCceeeeeehh
Confidence 46533 22345688999999999 9998743 2232211 11 23578899999999997766554
No 185
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.49 E-value=0.13 Score=44.66 Aligned_cols=83 Identities=11% Similarity=0.220 Sum_probs=60.8
Q ss_pred cccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeee-ccCccc---C--CCCCe
Q 043585 159 LIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVA-DDMFQF---I--PPADA 206 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~-gd~~~~---~--p~~D~ 206 (287)
..++.+++|.||.+. -+|. |+..+.|++ .+||+... ||..+- . ++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 356889999999977 3444 555555553 78898888 587772 1 35999
Q ss_pred EEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC
Q 043585 207 YFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE 250 (287)
Q Consensus 207 ~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~ 250 (287)
|++ |-...+-...|..+.+.|+| |.|+|+|.++-.
T Consensus 136 iFI-----DadK~~yp~~le~~~~lLr~----GGliv~DNvl~~ 170 (219)
T COG4122 136 VFI-----DADKADYPEYLERALPLLRP----GGLIVADNVLFG 170 (219)
T ss_pred EEE-----eCChhhCHHHHHHHHHHhCC----CcEEEEeecccC
Confidence 877 66677778899999999999 567777777654
No 186
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.069 Score=43.97 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=58.8
Q ss_pred CCCceeeeccCcccC-----CCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHH
Q 043585 187 TENLKYVADDMFQFI-----PPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKE 261 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~~-----p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e 261 (287)
.+++..+..+....+ -.||+|+.+.++ |-||--..+.+.+...|+| .|+-+++-+. +-+|.+.
T Consensus 82 ~tsc~vlrw~~~~aqsq~eq~tFDiIlaADCl--FfdE~h~sLvdtIk~lL~p---~g~Al~fsPR-------Rg~sL~k 149 (201)
T KOG3201|consen 82 LTSCCVLRWLIWGAQSQQEQHTFDIILAADCL--FFDEHHESLVDTIKSLLRP---SGRALLFSPR-------RGQSLQK 149 (201)
T ss_pred cceehhhHHHHhhhHHHHhhCcccEEEeccch--hHHHHHHHHHHHHHHHhCc---ccceeEecCc-------ccchHHH
Confidence 566666666655522 249999999987 3455567889999999999 7886555322 5679999
Q ss_pred HHHHHHhCCCcEEEEEe
Q 043585 262 WKTLFLDAGFTCCKITT 278 (287)
Q Consensus 262 ~~~ll~~aGf~~~~~~~ 278 (287)
|.+....+||.+.-...
T Consensus 150 F~de~~~~gf~v~l~en 166 (201)
T KOG3201|consen 150 FLDEVGTVGFTVCLEEN 166 (201)
T ss_pred HHHHHHhceeEEEeccc
Confidence 99999999998765443
No 187
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.32 E-value=0.07 Score=49.14 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=35.5
Q ss_pred eeeccCcc---cCCCCCeEEecccccc----CChHHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 043585 192 YVADDMFQ---FIPPADAYFFMLFFHA----FGGEDSLKILKKCREAIAGNGQRGKVLIMDIV 247 (287)
Q Consensus 192 ~~~gd~~~---~~p~~D~~~l~~vlh~----~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~ 247 (287)
.-..|+.. ++|.+|.|.+.-++|. =++....-.++++-..+.| ||.|+|+|.-
T Consensus 168 ~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErG 227 (484)
T COG5459 168 WRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERG 227 (484)
T ss_pred CCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccC---CCeEEEEeCC
Confidence 33445544 3566676666665554 4444444488999999999 9999999854
No 188
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=93.31 E-value=0.15 Score=45.20 Aligned_cols=80 Identities=9% Similarity=0.133 Sum_probs=56.6
Q ss_pred ccCcceEEEecCcc------------------cccc-hhhhhcCCC-------CCCceeeeccCcccC----------CC
Q 043585 160 IERLGSMVDVGGGN------------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFI----------PP 203 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~----------p~ 203 (287)
..+.+++|.||.+. -+|. |+..+.|++ .++|+++.||..+-+ .+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45688999999866 2333 444454442 689999999987731 24
Q ss_pred CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc
Q 043585 204 ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI 248 (287)
Q Consensus 204 ~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~ 248 (287)
||+|++ |-..+.-...++.+.+.|+| | .++|+|.++
T Consensus 157 fD~iFi-----DadK~~Y~~y~~~~l~ll~~---G-Gviv~DNvl 192 (247)
T PLN02589 157 FDFIFV-----DADKDNYINYHKRLIDLVKV---G-GVIGYDNTL 192 (247)
T ss_pred ccEEEe-----cCCHHHhHHHHHHHHHhcCC---C-eEEEEcCCC
Confidence 898877 44466677888999999998 4 556667765
No 189
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=93.09 E-value=0.21 Score=45.91 Aligned_cols=115 Identities=22% Similarity=0.237 Sum_probs=72.9
Q ss_pred CcceEEEecCcc-----------------cccc-hhhhhcCCC--------CCCceeee----ccCcccC--C--CCCeE
Q 043585 162 RLGSMVDVGGGN-----------------VLDL-PHAVANTPQ--------TENLKYVA----DDMFQFI--P--PADAY 207 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~--------~~Ri~~~~----gd~~~~~--p--~~D~~ 207 (287)
...++||||+|. ..|+ |..++.|++ .+||++.. .+++... + .+|++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999997 3554 555555542 45787753 3455432 2 49999
Q ss_pred EeccccccCChHH---HHHHHHHHH----------------HHhcCCCCCcEEEEEeeccCCCCCC------------CC
Q 043585 208 FFMLFFHAFGGED---SLKILKKCR----------------EAIAGNGQRGKVLIMDIVINEKEDE------------DQ 256 (287)
Q Consensus 208 ~l~~vlh~~~d~~---~~~iL~~~~----------------~al~~~~~~g~lli~e~~~~~~~~~------------~~ 256 (287)
++.=-+|.-.++. +.+-.++.+ +.+.+ ||.+-++..++.+...- +.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk 270 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKAFAKQVLWFTSLVSKK 270 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHHHHhhCcEEEEEeecc
Confidence 9988888765542 222222222 12224 67766666665554211 55
Q ss_pred CCHHHHHHHHHhCCCcEEEEEec
Q 043585 257 RTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 257 rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
-+.+.+.+.|++.|.+.++++..
T Consensus 271 ~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 271 ENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred CCHHHHHHHHHHcCCceEEEEEE
Confidence 68999999999999988877765
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=92.77 E-value=0.27 Score=42.98 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=64.9
Q ss_pred CcceEEEecCcc----------------cccchh--hhhcCCCCCCceeee-ccCcc--------cCCCCCeEEeccccc
Q 043585 162 RLGSMVDVGGGN----------------VLDLPH--AVANTPQTENLKYVA-DDMFQ--------FIPPADAYFFMLFFH 214 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dlp~--vi~~a~~~~Ri~~~~-gd~~~--------~~p~~D~~~l~~vlh 214 (287)
...+++|+|||+ .+|.-+ +....++.+|+.... -|+.. .++.+|+.+++..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~- 153 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS- 153 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh-
Confidence 567999999999 455522 333344456654322 24432 12247877777654
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC-----C-------CCCCHHHHHHHHHhCCCcEEEEEec--C
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED-----E-------DQRTDKEWKTLFLDAGFTCCKITTM--F 280 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~-----~-------~~rt~~e~~~ll~~aGf~~~~~~~~--~ 280 (287)
+|..+.++|++ +--++++-+-..-.+. . ..+-.+++..++++.||++..+.+- .
T Consensus 154 ---------~l~~i~~~l~~---~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~ 221 (228)
T TIGR00478 154 ---------ILPELDLLLNP---NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFSLTK 221 (228)
T ss_pred ---------HHHHHHHHhCc---CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEECCCC
Confidence 57888888998 4455556543322111 1 3334566777778889998877754 3
Q ss_pred Cccc
Q 043585 281 GLKS 284 (287)
Q Consensus 281 ~~~s 284 (287)
|..+
T Consensus 222 G~~g 225 (228)
T TIGR00478 222 GKRG 225 (228)
T ss_pred CCCC
Confidence 5443
No 191
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.65 E-value=0.055 Score=41.54 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=43.4
Q ss_pred CCeEEeccc---cc-cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc--CCCCCC-------------CCCCHHHHHH
Q 043585 204 ADAYFFMLF---FH-AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI--NEKEDE-------------DQRTDKEWKT 264 (287)
Q Consensus 204 ~D~~~l~~v---lh-~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~--~~~~~~-------------~~rt~~e~~~ 264 (287)
||+|++-.| +| +|.|+-..++++++++.|+| ||. +|+|+-. .-.... +. .++++.+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---GG~-lilEpQ~w~sY~~~~~~~~~~~~n~~~i~l-rP~~F~~ 76 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---GGI-LILEPQPWKSYKKAKRLSEEIRENYKSIKL-RPDQFED 76 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---EEE-EEEE---HHHHHTTTTS-HHHHHHHHH-----GGGHHH
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---CCE-EEEeCCCcHHHHHHhhhhHHHHhHHhceEE-ChHHHHH
Confidence 788888775 45 79999999999999999999 554 5556421 100110 32 3557888
Q ss_pred HHHh--CCCcEEEEEecC
Q 043585 265 LFLD--AGFTCCKITTMF 280 (287)
Q Consensus 265 ll~~--aGf~~~~~~~~~ 280 (287)
+|.+ .||+.++....+
T Consensus 77 ~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 77 YLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHTSTTT---EEEEE---
T ss_pred HHHhcccceEEEEEcccC
Confidence 8887 599988766554
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.60 E-value=0.18 Score=45.84 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=46.1
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC-------CCCceeeeccCcc-cCCCCCeEEeccccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ-------TENLKYVADDMFQ-FIPPADAYFFMLFFH 214 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~-~~p~~D~~~l~~vlh 214 (287)
......+|||||||. .+|+ +..++.+++ .++++++.+|+.+ +.+.+|+++ ++.-.
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~Vv-aNlPY 111 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCV-ANVPY 111 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEE-ecCCc
Confidence 455667999999998 4554 444444432 4689999999988 556788655 67777
Q ss_pred cCChHHHHHHH
Q 043585 215 AFGGEDSLKIL 225 (287)
Q Consensus 215 ~~~d~~~~~iL 225 (287)
+++.+...++|
T Consensus 112 ~Istpil~~ll 122 (294)
T PTZ00338 112 QISSPLVFKLL 122 (294)
T ss_pred ccCcHHHHHHH
Confidence 77776555555
No 193
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=92.58 E-value=0.23 Score=45.40 Aligned_cols=100 Identities=20% Similarity=0.195 Sum_probs=57.7
Q ss_pred CcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCccc---CC-CCCeEEecccccc
Q 043585 162 RLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQF---IP-PADAYFFMLFFHA 215 (287)
Q Consensus 162 ~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~---~p-~~D~~~l~~vlh~ 215 (287)
...+|||+|||. .+|. |+.++.|++ .++++|+.+|+.+. .. .+|+|++-=-=-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCC
Confidence 357999999999 4665 666666653 35799999999762 22 4898886522111
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
.. ++..++| ..+.| + +|+.+..-... -.| +.+.+ .||++.++.+..
T Consensus 253 ~~-~~~~~~l----~~~~~---~-~ivyvsc~p~t----~~r---d~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 253 IG-KELCDYL----SQMAP---R-FILYSSCNAQT----MAK---DLAHL---PGYRIERVQLFD 298 (315)
T ss_pred cc-HHHHHHH----HHcCC---C-eEEEEECCccc----chh---HHhhc---cCcEEEEEEEec
Confidence 11 1222222 33566 3 45444322211 223 33333 599999998873
No 194
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.53 E-value=0.13 Score=43.94 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=48.4
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCCC------CCCceeeeccCcccCC----CCCeEEeccccc
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTPQ------TENLKYVADDMFQFIP----PADAYFFMLFFH 214 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~p----~~D~~~l~~vlh 214 (287)
...++||+|||+ .+|. |..++.+++ .++++++.+|+++.++ .+|+|++-=-.+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 456999999998 2333 444444432 3579999999987332 389998765544
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI 248 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~ 248 (287)
.--.+++...|.+ ...+.| +++++++.-.
T Consensus 133 ~g~~~~~l~~l~~-~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 133 KGLLEETINLLED-NGWLAD----EALIYVESEV 161 (199)
T ss_pred CChHHHHHHHHHH-CCCcCC----CcEEEEEecC
Confidence 3323333333332 123677 4566666543
No 195
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.19 E-value=0.37 Score=41.43 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=49.9
Q ss_pred CCCceeeeccCcccCC--C-CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHH
Q 043585 187 TENLKYVADDMFQFIP--P-ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWK 263 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~~p--~-~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~ 263 (287)
.+||++.-||-++.++ . .|+|+++-+ .-+-...||.+....++. ..++++. +. .....++
T Consensus 47 ~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----GG~lI~~ILe~~~~~~~~---~~~lILq-P~---------~~~~~LR 109 (205)
T PF04816_consen 47 EDRIEVRLGDGLEVLKPGEDVDTIVIAGM----GGELIIEILEAGPEKLSS---AKRLILQ-PN---------THAYELR 109 (205)
T ss_dssp TTTEEEEE-SGGGG--GGG---EEEEEEE-----HHHHHHHHHHTGGGGTT-----EEEEE-ES---------S-HHHHH
T ss_pred cccEEEEECCcccccCCCCCCCEEEEecC----CHHHHHHHHHhhHHHhcc---CCeEEEe-CC---------CChHHHH
Confidence 7899999999999654 3 888888764 345577888887766665 4455553 22 2377999
Q ss_pred HHHHhCCCcEEEEEec
Q 043585 264 TLFLDAGFTCCKITTM 279 (287)
Q Consensus 264 ~ll~~aGf~~~~~~~~ 279 (287)
+||.+.||.+..-.-+
T Consensus 110 ~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 110 RWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCEEEEeEEE
Confidence 9999999998755443
No 196
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=91.53 E-value=0.52 Score=39.10 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=67.7
Q ss_pred hhhcccccccCcceEEEecCcc-cccc------------------hhhhhcC-CCCCCceeeeccCcc-c-----CC--C
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN-VLDL------------------PHAVANT-PQTENLKYVADDMFQ-F-----IP--P 203 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~-v~Dl------------------p~vi~~a-~~~~Ri~~~~gd~~~-~-----~p--~ 203 (287)
+... ++....-|+.+|.|+ ++-. |+-.... +..+.+.++.||.+. . ++ .
T Consensus 41 ~s~I---~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 41 ASVI---DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred Hhcc---CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 5556 678888999999999 1111 1111111 126667799999887 3 23 3
Q ss_pred CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 043585 204 ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIV 247 (287)
Q Consensus 204 ~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~ 247 (287)
+|+++..--+-+++-...++||+++..-|+. ||.++-+..-
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 9999999999999999999999999999999 8988877654
No 197
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=91.23 E-value=0.28 Score=43.93 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=40.3
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCCC---CCCceeeeccCcc-cCCCC-CeEEeccccccCC
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTPQ---TENLKYVADDMFQ-FIPPA-DAYFFMLFFHAFG 217 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~---~~Ri~~~~gd~~~-~~p~~-D~~~l~~vlh~~~ 217 (287)
......+|||||||. .+|. |.+++.+++ .++++++.+|+.+ +++.. ...++++.-++.+
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~is 118 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLPYNIT 118 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCCccch
Confidence 455667999999998 4554 555555543 3789999999988 44443 3444566655555
Q ss_pred hH
Q 043585 218 GE 219 (287)
Q Consensus 218 d~ 219 (287)
-+
T Consensus 119 s~ 120 (272)
T PRK00274 119 TP 120 (272)
T ss_pred HH
Confidence 43
No 198
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=90.69 E-value=0.46 Score=45.40 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=63.2
Q ss_pred ccCcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcccC------C-CCCeEEec
Q 043585 160 IERLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQFI------P-PADAYFFM 210 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~------p-~~D~~~l~ 210 (287)
..+..+|+|+|||. .+|. +++++.|++ .++++++.+|+.+.. . .+|++++-
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 34567999999999 4554 666666653 468999999986521 1 37888752
Q ss_pred cccccCChHH-HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 211 LFFHAFGGED-SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 211 ~vlh~~~d~~-~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
-+..- ...+|+.+. .++| ++-++|. .+ + .|...=.++|.+.||++..+.++.
T Consensus 370 -----PPr~G~~~~~l~~l~-~l~~---~~ivyvs----c~-p----~tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 370 -----PPRKGCAAEVLRTII-ELKP---ERIVYVS----CN-P----ATLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred -----cCCCCCCHHHHHHHH-hcCC---CEEEEEc----CC-H----HHHHHHHHHHHHCCeeEEEEEEec
Confidence 21111 134555544 3777 5544442 11 1 134344556778899999988874
No 199
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.64 E-value=0.26 Score=45.72 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=66.6
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC-------------CCCceeeeccCcccCC----CCC
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------------TENLKYVADDMFQFIP----PAD 205 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------------~~Ri~~~~gd~~~~~p----~~D 205 (287)
.+..+++-+|||. .+|+ |.||+.++. .+|++.+.-|.|+-+. .||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 5678999999999 5777 889888872 7899999999998433 367
Q ss_pred eEEeccccccCChHHH--------HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEE
Q 043585 206 AYFFMLFFHAFGGEDS--------LKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 206 ~~~l~~vlh~~~d~~~--------~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 275 (287)
+++. |++|++. ..+-+-+++.|++ +|.+++-- -.+-. .-+..=-+.+-+++|||....
T Consensus 368 ~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa-gs~y~---tp~vfw~i~aTik~AG~~~~P 433 (508)
T COG4262 368 VVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA-GSPYF---TPRVFWRIDATIKSAGYRVWP 433 (508)
T ss_pred EEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec-CCCcc---CCceeeeehhHHHhCcceeee
Confidence 6654 5555443 3445566788998 78776632 11111 111111234556788877643
No 200
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.94 E-value=1.7 Score=36.62 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=67.1
Q ss_pred cceEEEecCcc------------------cccc-hhhhhcCCC-----CCCceeeeccCcccC-C-CCCeEEeccccccC
Q 043585 163 LGSMVDVGGGN------------------VLDL-PHAVANTPQ-----TENLKYVADDMFQFI-P-PADAYFFMLFFHAF 216 (287)
Q Consensus 163 ~~~vlDvGgG~------------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~~-p-~~D~~~l~~vlh~~ 216 (287)
...+++||||+ --|+ |+.++...+ ..++..+..|+++.+ + +.|+.++.--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 67899999999 2344 555544332 455677888888843 2 47887776533222
Q ss_pred ChHH-------------------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 217 GGED-------------------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 217 ~d~~-------------------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
++++ -.++|..+-..|.| .|.++++-...+. .+|+-++++.-||.....+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~N~--------p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRANK--------PKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhhcC--------HHHHHHHHhhcccceeEEE
Confidence 2221 23566666667777 7888876543332 7899999999999865444
No 201
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=89.40 E-value=0.22 Score=43.96 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=60.6
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC-----CCCceeeeccCcccCC--CCCeEEecccccc
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQFIP--PADAYFFMLFFHA 215 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~~p--~~D~~~l~~vlh~ 215 (287)
+.+.+|+|||||- ..|+ ...++.... ..+.+....|..+..| .+|+.++-.++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3478999999999 2333 222222221 5677888889999655 3999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC---CCCCHHHHHHHHHhCCCcEEEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE---DQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~---~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
....+.-. --++.+++.. -.++|.-+...=.+.. ...-..++..++..-|+.+.+.
T Consensus 184 le~q~~g~-g~~ll~~~~~----~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 184 LERQRRGA-GLELLDALRS----PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHSTTH-HHHHHHHSCE----SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHhcch-HHHHHHHhCC----CeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 87766433 2334456664 4666766655443322 2222345566666667775443
No 202
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=88.24 E-value=0.41 Score=44.06 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=50.4
Q ss_pred ccCcceEEEecCcc----------------cccchhhhhcCCC-------CCCceeeeccCcc-cCC--CCCeEEecccc
Q 043585 160 IERLGSMVDVGGGN----------------VLDLPHAVANTPQ-------TENLKYVADDMFQ-FIP--PADAYFFMLFF 213 (287)
Q Consensus 160 ~~~~~~vlDvGgG~----------------v~Dlp~vi~~a~~-------~~Ri~~~~gd~~~-~~p--~~D~~~l~~vl 213 (287)
+-+.++|||||||+ .+|-.++++.+.+ .+.|+++.|...+ .+| ..|+++.-|.=
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 44678999999999 4555555544442 6789999998888 666 49999877755
Q ss_pred ccCChH-HHHHHHHHHHHHhcCCCCCcEEE
Q 043585 214 HAFGGE-DSLKILKKCREAIAGNGQRGKVL 242 (287)
Q Consensus 214 h~~~d~-~~~~iL~~~~~al~~~~~~g~ll 242 (287)
+..-=| -.-.+|-.==+-|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 443222 111222211256788 77654
No 203
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=87.69 E-value=1.1 Score=42.18 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=58.0
Q ss_pred CcceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcccC----CCCCeEEecccccc
Q 043585 162 RLGSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQFI----PPADAYFFMLFFHA 215 (287)
Q Consensus 162 ~~~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~~----p~~D~~~l~~vlh~ 215 (287)
...+|+|+|||. .+|. |..++.+++ .++++|+.+|+.+.. ..+|+|++-=-=-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 346899999999 3554 555665543 357999999987622 24898776422111
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
.. ..+++.+. .++| + +++.+..-... ..| +...+ .||++.++.+..
T Consensus 313 ~~----~~~l~~l~-~~~p---~-~ivyvsc~p~T----laR---Dl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 313 IG----KELCDYLS-QMAP---K-FILYSSCNAQT----MAK---DIAEL---SGYQIERVQLFD 358 (374)
T ss_pred Cc----HHHHHHHH-hcCC---C-eEEEEEeCHHH----HHH---HHHHh---cCceEEEEEEec
Confidence 11 23444443 3677 4 45544431111 223 23333 799999998873
No 204
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=85.39 E-value=4.6 Score=36.92 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=64.8
Q ss_pred CCCceeeeccCccc--CCC----CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc---CCCCC----
Q 043585 187 TENLKYVADDMFQF--IPP----ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI---NEKED---- 253 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~--~p~----~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~---~~~~~---- 253 (287)
.+..+..+|||.+- .++ +|+|+...++. +-+.....|+.+++.|+| ||..+=+-+.+ .+..+
T Consensus 237 ~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d~~g~~~~ 311 (369)
T KOG2798|consen 237 TGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFEDTHGVENE 311 (369)
T ss_pred CCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccCCCCCccc
Confidence 45566688999993 332 89999886653 344578999999999999 88777666553 22222
Q ss_pred -CCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 254 -EDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 254 -~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
.-+.|.+++..+.+.-||++.+-..+
T Consensus 312 ~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 312 MSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred ccccccHHHHHHHHHhcCcEEEEeeee
Confidence 17889999999999999998766543
No 205
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=85.04 E-value=0.91 Score=38.37 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=45.3
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCccc---C--C-C-CCeEEec
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQF---I--P-P-ADAYFFM 210 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~---~--p-~-~D~~~l~ 210 (287)
...++||++||+ .+|. +..++.+++ .++++++.+|.+.. . . . +|+|++-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 357899999999 3454 444444432 45899999999662 1 1 2 4555553
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeecc
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVI 248 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~ 248 (287)
=-...-..+++..+|.+ ...+++ +.++|+|.-.
T Consensus 129 PPy~~~~~~~~l~~l~~-~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNGALQALLELCEN-NWILED----TVLIVVEEDR 161 (189)
T ss_pred cCCCCCcHHHHHHHHHH-CCCCCC----CeEEEEEecC
Confidence 33322222333333332 124555 5577777543
No 206
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.73 E-value=11 Score=32.27 Aligned_cols=106 Identities=12% Similarity=0.028 Sum_probs=63.9
Q ss_pred cccCcceEEEecCcc------------------cccchhhhhcCCCCCCceeeeccCccc---------CCC--CCeEE-
Q 043585 159 LIERLGSMVDVGGGN------------------VLDLPHAVANTPQTENLKYVADDMFQF---------IPP--ADAYF- 208 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~~---------~p~--~D~~~- 208 (287)
-+.+...|+|+|... .+|+.++-. -..|.++.+||+.+ ++. +|+|+
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 467889999999855 334333222 34599999999984 122 58887
Q ss_pred -ecc-cccc------CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 209 -FML-FFHA------FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 209 -l~~-vlh~------~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
+.. +--. .+-.-|...+.-+...|+| +|.+++-..--.+ .+++...+.+- |+.+++.-..
T Consensus 118 D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fqg~~--------~~~~l~~~~~~-F~~v~~~KP~ 185 (205)
T COG0293 118 DMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQGED--------FEDLLKALRRL-FRKVKIFKPK 185 (205)
T ss_pred cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEeCCC--------HHHHHHHHHHh-hceeEEecCc
Confidence 222 2222 2333455667777788999 8888876543332 44554444443 6666665443
No 207
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=84.53 E-value=0.32 Score=41.42 Aligned_cols=78 Identities=13% Similarity=0.302 Sum_probs=45.1
Q ss_pred ceEEEecCcc-----------------cccc-hhhhhcCC------CCCCceeeeccCccc----CC-C-CCeEEecccc
Q 043585 164 GSMVDVGGGN-----------------VLDL-PHAVANTP------QTENLKYVADDMFQF----IP-P-ADAYFFMLFF 213 (287)
Q Consensus 164 ~~vlDvGgG~-----------------v~Dl-p~vi~~a~------~~~Ri~~~~gd~~~~----~p-~-~D~~~l~~vl 213 (287)
..+||||||. .+|. ...+..+. ..+++.++.+|...- ++ + .|-+.+..-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP- 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP- 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-
Confidence 3899999999 4443 23333322 278899999988772 23 2 443333210
Q ss_pred ccCChH-------HHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 214 HAFGGE-------DSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 214 h~~~d~-------~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
.-|+.. -...+|+.+++.|+| ||.|.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 012221 124688899999999 99988764
No 208
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.99 E-value=2.4 Score=39.99 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=53.6
Q ss_pred CCCceeeeccCcc---cCC--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC
Q 043585 187 TENLKYVADDMFQ---FIP--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK 251 (287)
Q Consensus 187 ~~Ri~~~~gd~~~---~~p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~ 251 (287)
.+||+.+.+++.+ ..| ++|.+.++.+.--+++++..++++.+.++++| ||||+.-....+..
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~~ 340 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPPW 340 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCCC
Confidence 5999999998877 243 49999999999888999999999999999999 99999977765543
No 209
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=83.77 E-value=0.94 Score=38.37 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=45.1
Q ss_pred CCCceeeeccCcc-cCCCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 043585 187 TENLKYVADDMFQ-FIPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIV 247 (287)
Q Consensus 187 ~~Ri~~~~gd~~~-~~p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~ 247 (287)
..+++.+.||..+ .+..+|+|++-.+=--.=+|..+.+++++-+-|+. +++++=.+..
T Consensus 79 ~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~---d~tiiPq~v~ 137 (252)
T COG4076 79 DVNWEVVVGDARDYDFENADVVICEMLDTALIEEKQVPVINAVLEFLRY---DPTIIPQEVR 137 (252)
T ss_pred CcceEEEecccccccccccceeHHHHhhHHhhcccccHHHHHHHHHhhc---CCccccHHHh
Confidence 6789999999999 77679998876554445667778999999998998 8887754443
No 210
>PRK04148 hypothetical protein; Provisional
Probab=83.37 E-value=2.5 Score=33.74 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=48.9
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCCCCCCceeeeccCcccCC----CCCeEEeccccccCChHH
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTPQTENLKYVADDMFQFIP----PADAYFFMLFFHAFGGED 220 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~~~Ri~~~~gd~~~~~p----~~D~~~l~~vlh~~~d~~ 220 (287)
+..+++|||+|. .+|. |..++.+++ ..+.++.+|.|++-+ ++|++...+. +.|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~e 89 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PRD 89 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CHH
Confidence 347899999998 3443 444444432 346899999999644 4898877664 355
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeeccCCC
Q 043585 221 SLKILKKCREAIAGNGQRGKVLIMDIVINEK 251 (287)
Q Consensus 221 ~~~iL~~~~~al~~~~~~g~lli~e~~~~~~ 251 (287)
...-+.++++.+.- -+ ++-+...|.
T Consensus 90 l~~~~~~la~~~~~-----~~-~i~~l~~e~ 114 (134)
T PRK04148 90 LQPFILELAKKINV-----PL-IIKPLSGEE 114 (134)
T ss_pred HHHHHHHHHHHcCC-----CE-EEEcCCCCC
Confidence 55556666665543 34 444554443
No 211
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=81.19 E-value=5.7 Score=34.96 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=57.7
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCC----C-CCCceeeeccCcccCC-----CCCeEEeccccc
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTP----Q-TENLKYVADDMFQFIP-----PADAYFFMLFFH 214 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~----~-~~Ri~~~~gd~~~~~p-----~~D~~~l~~vlh 214 (287)
..++|+=||=.. |+|. ..+++..+ + .-.|+.+.+|+..++| .||+++.-=
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC---
Confidence 346677777554 6666 33443332 2 4449999999999888 389986532
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHH---HHHHHHHhCCCcEEEEEec
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDK---EWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~---e~~~ll~~aGf~~~~~~~~ 279 (287)
-|+.+-....|.+..++|+. +|+..++. +.. ++.|.. ++++.+.+.||.+..+++-
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~--~g~~gy~~---~~~----~~~s~~~~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKG--EGCAGYFG---FTH----KEASPDKWLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-S--TT-EEEEE---E-T----TT--HHHHHHHHHHHHTS--EEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCceEEEE---Eec----CcCcHHHHHHHHHHHHHCCcCHHHHHhh
Confidence 26778888899999999998 24444431 121 333444 5678888999999999875
No 212
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=80.85 E-value=1.8 Score=34.06 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.6
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFGL 282 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 282 (287)
.|+.+ +++++++.+++ ||.+...- +..-.++-|.++||.+.+....++.
T Consensus 67 lWs~e----~~~~l~~~~~~---~~~l~Tys------------~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 67 LWSEE----LFKKLARLSKP---GGTLATYS------------SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp GSSHH----HHHHHHHHEEE---EEEEEES--------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred cCCHH----HHHHHHHHhCC---CcEEEEee------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 68875 89999999999 77666532 1346889999999999888766553
No 213
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=79.29 E-value=6.7 Score=37.87 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=63.9
Q ss_pred eEEEecCcc----------------cccchh-hhhcC-----CCCCCceeeeccCcc-cCC--CCCeEEeccccccC-Ch
Q 043585 165 SMVDVGGGN----------------VLDLPH-AVANT-----PQTENLKYVADDMFQ-FIP--PADAYFFMLFFHAF-GG 218 (287)
Q Consensus 165 ~vlDvGgG~----------------v~Dlp~-vi~~a-----~~~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~-~d 218 (287)
+++=+|||. .+|..+ +++.. ++.+-+.+...|+.. .++ .+|+++.+..||.. .|
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~d 130 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFED 130 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCC
Confidence 899999999 455533 33332 335667889999988 566 59999999999974 55
Q ss_pred HHHHH-------HHHHHHHHhcCCCCCcEEEEEeec--cCCCCC
Q 043585 219 EDSLK-------ILKKCREAIAGNGQRGKVLIMDIV--INEKED 253 (287)
Q Consensus 219 ~~~~~-------iL~~~~~al~~~~~~g~lli~e~~--~~~~~~ 253 (287)
+++.- .+..+++.+++ +|+.+.+-.. ++..+.
T Consensus 131 e~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r~ 171 (482)
T KOG2352|consen 131 EDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGRK 171 (482)
T ss_pred chhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCCC
Confidence 55433 67899999999 9999988884 565554
No 214
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=78.20 E-value=7.3 Score=33.92 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=69.8
Q ss_pred cccCcceEEEecCcc---------ccc---------c-h----hhhhcCCCCCCceeeeccCcccCC------CCCeEEe
Q 043585 159 LIERLGSMVDVGGGN---------VLD---------L-P----HAVANTPQTENLKYVADDMFQFIP------PADAYFF 209 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------v~D---------l-p----~vi~~a~~~~Ri~~~~gd~~~~~p------~~D~~~l 209 (287)
.+....+||-+|.++ ++. . | +.+..|++.++|--+-.|...|.. ..|+++.
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 466778999999866 111 1 2 345556668899999999988632 3666543
Q ss_pred ccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeec--cCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 210 MLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIV--INEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~--~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
.|- -++++..++.++..-|++ ||.++|.=-- ++....+. -..++=.+.|++.||++.+...+..
T Consensus 150 -DVa---Qp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p~-~vf~~e~~~L~~~~~~~~e~i~LeP 215 (229)
T PF01269_consen 150 -DVA---QPDQARIAALNARHFLKP---GGHLIISIKARSIDSTADPE-EVFAEEVKKLKEEGFKPLEQITLEP 215 (229)
T ss_dssp -E-S---STTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSHH-HHHHHHHHHHHCTTCEEEEEEE-TT
T ss_pred -cCC---ChHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCHH-HHHHHHHHHHHHcCCChheEeccCC
Confidence 333 335677888899899999 8988865322 23222211 1234445667888999999888743
No 215
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.17 E-value=1.4 Score=39.83 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=50.4
Q ss_pred CCCceeeeccCcccCC------C-CCeEEecc-ccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeec---cCCCCCCC
Q 043585 187 TENLKYVADDMFQFIP------P-ADAYFFML-FFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIV---INEKEDED 255 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~~p------~-~D~~~l~~-vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~---~~~~~~~~ 255 (287)
.=+|.|++.|....++ + ||++++++ ..|..+++ +.++++| + .++|+|.. ++-.....
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~---~-A~LvvEtaKfmvdLrKEq~ 266 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP---D-AVLVVETAKFMVDLRKEQL 266 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC---C-CEEEEEcchhheeCCHHHH
Confidence 3467889888877544 2 89877765 66777775 4467898 5 55566763 33322112
Q ss_pred CCCHHHHHHHHHhCCCcEEE
Q 043585 256 QRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 256 ~rt~~e~~~ll~~aGf~~~~ 275 (287)
.--.+..++|+++|||+.+.
T Consensus 267 ~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 267 QEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred HHHHHHHHHHHHHCCCcccc
Confidence 22356788999999998754
No 216
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=76.64 E-value=5.6 Score=34.23 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=34.7
Q ss_pred CCCceeeeccCcccCCC-CCeEEeccccccCChHH-----------HHHHHHHHHHHhcCCCCCcEEEEEeecc
Q 043585 187 TENLKYVADDMFQFIPP-ADAYFFMLFFHAFGGED-----------SLKILKKCREAIAGNGQRGKVLIMDIVI 248 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~~p~-~D~~~l~~vlh~~~d~~-----------~~~iL~~~~~al~~~~~~g~lli~e~~~ 248 (287)
..+|.+.-.+.+.-.|+ +---.++-.++.++|.. +..++.+..-.|++ ||.++.+.-+.
T Consensus 116 ~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 116 YPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred cccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 44566665555554443 33333444444444443 24567777788898 99999876553
No 217
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=75.33 E-value=3.5 Score=38.60 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=48.2
Q ss_pred CCCceeeeccCcc-cCC--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccC
Q 043585 187 TENLKYVADDMFQ-FIP--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVIN 249 (287)
Q Consensus 187 ~~Ri~~~~gd~~~-~~p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~ 249 (287)
.....++.+|+.. +++ .+|.+....+..+-++. ...++++++.++| ||.+++-|++..
T Consensus 159 ~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~ 219 (364)
T KOG1269|consen 159 DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKT 219 (364)
T ss_pred hhhcceehhhhhcCCCCccccCcEEEEeecccCCcH--HHHHHHHhcccCC---CceEEeHHHHHh
Confidence 5556668899999 566 49999999988888876 4899999999999 999999888753
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.82 E-value=6 Score=34.51 Aligned_cols=81 Identities=11% Similarity=0.210 Sum_probs=55.5
Q ss_pred ccCcceEEEecC--cc----------------cccc--------hhhhhcCCCCCCceeeeccCcccCC---------CC
Q 043585 160 IERLGSMVDVGG--GN----------------VLDL--------PHAVANTPQTENLKYVADDMFQFIP---------PA 204 (287)
Q Consensus 160 ~~~~~~vlDvGg--G~----------------v~Dl--------p~vi~~a~~~~Ri~~~~gd~~~~~p---------~~ 204 (287)
.-++++++|||. |. -+|. ++.++.|.....|+++.|...+.++ ++
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 446788889887 44 2333 3455555558889999998887532 37
Q ss_pred CeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccC
Q 043585 205 DAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVIN 249 (287)
Q Consensus 205 D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~ 249 (287)
|.+++ |-..+.......++-+.+++ |.|+++|.++-
T Consensus 151 DfaFv-----DadK~nY~~y~e~~l~Llr~----GGvi~~DNvl~ 186 (237)
T KOG1663|consen 151 DFAFV-----DADKDNYSNYYERLLRLLRV----GGVIVVDNVLW 186 (237)
T ss_pred eEEEE-----ccchHHHHHHHHHHHhhccc----ccEEEEecccc
Confidence 77654 44455566889999999999 55666677553
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=74.76 E-value=0.72 Score=38.16 Aligned_cols=91 Identities=15% Similarity=0.333 Sum_probs=46.4
Q ss_pred ceEEEecCcc---------------cccc-hhhhhcCCC-------CCCceeeeccCcccC---C--C-CCeEEecccc-
Q 043585 164 GSMVDVGGGN---------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFI---P--P-ADAYFFMLFF- 213 (287)
Q Consensus 164 ~~vlDvGgG~---------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~---p--~-~D~~~l~~vl- 213 (287)
.+|+|+-||. -+|. |.-++.++. .+||+++.||+++.. . . +|+|+++=-+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 3688987777 3444 444444442 679999999999942 2 2 7999986321
Q ss_pred -------------ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHh
Q 043585 214 -------------HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLD 268 (287)
Q Consensus 214 -------------h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~ 268 (287)
....+-...++++.+++. .+ .+++. +| +.....|+.++..+
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~-----nv~l~---LP-----Rn~dl~ql~~~~~~ 134 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TP-----NVVLF---LP-----RNSDLNQLSQLTRE 134 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S------EEEE---EE-----TTB-HHHHHHT---
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhh-CC-----CEEEE---eC-----CCCCHHHHHHHhcc
Confidence 122333456777765443 33 33332 44 44567788777544
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=73.57 E-value=11 Score=32.63 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCCceeeeccCccc--CCC-CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHH
Q 043585 187 TENLKYVADDMFQF--IPP-ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWK 263 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~--~p~-~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~ 263 (287)
-++++++.+..-+- .+. ||++..+-+- ....++.-|...+++ ||.++..-.....+ + ..|.+
T Consensus 116 L~nv~i~~~RaE~~~~~~~~~D~vtsRAva------~L~~l~e~~~pllk~---~g~~~~~k~~~~~~----e--~~e~~ 180 (215)
T COG0357 116 LENVEIVHGRAEEFGQEKKQYDVVTSRAVA------SLNVLLELCLPLLKV---GGGFLAYKGLAGKD----E--LPEAE 180 (215)
T ss_pred CCCeEEehhhHhhcccccccCcEEEeehcc------chHHHHHHHHHhccc---CCcchhhhHHhhhh----h--HHHHH
Confidence 56688888876662 235 9999887764 234577777788888 78876543332211 1 45666
Q ss_pred HHHHhCCCcEEEEEec
Q 043585 264 TLFLDAGFTCCKITTM 279 (287)
Q Consensus 264 ~ll~~aGf~~~~~~~~ 279 (287)
.....-|+.+.++...
T Consensus 181 ~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 181 KAILPLGGQVEKVFSL 196 (215)
T ss_pred HHHHhhcCcEEEEEEe
Confidence 6677778888888766
No 221
>PRK13699 putative methylase; Provisional
Probab=73.05 E-value=23 Score=30.73 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEE
Q 043585 219 EDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 219 ~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 275 (287)
+-....++.++++|+| ||.+++.-. .+....+...++++||++..
T Consensus 49 ew~~~~l~E~~RVLKp---gg~l~if~~---------~~~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 49 EWLQPACNEMYRVLKK---DALMVSFYG---------WNRVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHHHHcCC---CCEEEEEec---------cccHHHHHHHHHHCCCEEee
Confidence 3346789999999999 888776321 11245677888999998764
No 222
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=72.70 E-value=9.6 Score=37.02 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=40.9
Q ss_pred CCCceeeeccCcc---cCC-CCCeEE----ecc---------ccccCChHHH-------HHHHHHHHHHhcCCCCCcEEE
Q 043585 187 TENLKYVADDMFQ---FIP-PADAYF----FML---------FFHAFGGEDS-------LKILKKCREAIAGNGQRGKVL 242 (287)
Q Consensus 187 ~~Ri~~~~gd~~~---~~p-~~D~~~----l~~---------vlh~~~d~~~-------~~iL~~~~~al~~~~~~g~ll 242 (287)
..+|.+...|... .+| .||.|+ ++. +...|+.++. .+||+++.+.|+| ||+|+
T Consensus 163 ~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LV 239 (470)
T PRK11933 163 VSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLV 239 (470)
T ss_pred CCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEE
Confidence 3456666677654 234 389888 331 3445766655 7899999999999 99887
Q ss_pred EEeeccC
Q 043585 243 IMDIVIN 249 (287)
Q Consensus 243 i~e~~~~ 249 (287)
=..+.+.
T Consensus 240 YSTCT~~ 246 (470)
T PRK11933 240 YSTCTLN 246 (470)
T ss_pred EECCCCC
Confidence 7666554
No 223
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.55 E-value=6.3 Score=33.07 Aligned_cols=43 Identities=7% Similarity=0.121 Sum_probs=33.2
Q ss_pred CCCeEEeccccccCCh----------HHHHHHHHHHHHHhcCCCCCcEEEEEeeccC
Q 043585 203 PADAYFFMLFFHAFGG----------EDSLKILKKCREAIAGNGQRGKVLIMDIVIN 249 (287)
Q Consensus 203 ~~D~~~l~~vlh~~~d----------~~~~~iL~~~~~al~~~~~~g~lli~e~~~~ 249 (287)
..|+|.|.++|||++- +...+++.++++.|++ +.++|.-...|
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~P 102 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMP 102 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCC
Confidence 3699999999999875 5567788888888888 46666666554
No 224
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=72.28 E-value=3 Score=34.89 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=47.4
Q ss_pred cCcceEEEecCcc-----------------cccchhhhhcCCC---------CCCceeeeccCccc-----CC--C----
Q 043585 161 ERLGSMVDVGGGN-----------------VLDLPHAVANTPQ---------TENLKYVADDMFQF-----IP--P---- 203 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dlp~vi~~a~~---------~~Ri~~~~gd~~~~-----~p--~---- 203 (287)
++...||-+|+|- =+|+|+|++.-++ ..+.++++.|+.++ +. +
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4556999999999 4778998776442 23367899999963 11 2
Q ss_pred -CCeEEeccccccCChHHHHHHHHHHH
Q 043585 204 -ADAYFFMLFFHAFGGEDSLKILKKCR 229 (287)
Q Consensus 204 -~D~~~l~~vlh~~~d~~~~~iL~~~~ 229 (287)
.-++++-.++.+++++++..+|+.++
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 33677778999999999999998763
No 225
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=72.27 E-value=2.8 Score=36.73 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=66.5
Q ss_pred CcceEEEecCcc----------------cccc-hhhhhcCCC--CCCc--eeeeccCcc-cCC--CCCeEEeccccccCC
Q 043585 162 RLGSMVDVGGGN----------------VLDL-PHAVANTPQ--TENL--KYVADDMFQ-FIP--PADAYFFMLFFHAFG 217 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~--~~Ri--~~~~gd~~~-~~p--~~D~~~l~~vlh~~~ 217 (287)
...++.|||||. ..|. -.+++.++. .+.| +...+|--. ++. ++|+++.+--+|--+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 468999999987 3343 345666554 2433 344555333 343 499999999997544
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC------------------CC---CCHHHHHHHHHhCCCcEEEE
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE------------------DQ---RTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~------------------~~---rt~~e~~~ll~~aGf~~~~~ 276 (287)
| ...-+.+|+.+|+| +|-++ .-+.-.+.-.+ +. -...++..+|..|||....+
T Consensus 152 d--LPg~m~~ck~~lKP---Dg~Fi-asmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 152 D--LPGSMIQCKLALKP---DGLFI-ASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred c--CchHHHHHHHhcCC---Cccch-hHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 4 24566789999999 77543 22222222111 11 12357788999999976543
No 226
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=71.30 E-value=1.8 Score=35.14 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=39.9
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCC-----CCCceeeeccCcccCC--C-CCeEEeccccc
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-----TENLKYVADDMFQFIP--P-ADAYFFMLFFH 214 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-----~~Ri~~~~gd~~~~~p--~-~D~~~l~~vlh 214 (287)
-.+.++.|+|||- .+|+ |+.++.+.+ .-.+.+...|+.++.+ + +|..++.--+-
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 3457999999988 7887 777777654 4456888899988544 3 88888766553
No 227
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.96 E-value=69 Score=27.69 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=57.1
Q ss_pred hhhcCCCCCCceeeeccCcccCC------CCCeEEeccccccC-ChHHHHHHHHHHHHHhcCCCCCcEEEE-Eeec-cCC
Q 043585 180 AVANTPQTENLKYVADDMFQFIP------PADAYFFMLFFHAF-GGEDSLKILKKCREAIAGNGQRGKVLI-MDIV-INE 250 (287)
Q Consensus 180 vi~~a~~~~Ri~~~~gd~~~~~p------~~D~~~l~~vlh~~-~d~~~~~iL~~~~~al~~~~~~g~lli-~e~~-~~~ 250 (287)
.+..+++.++|--+-+|...|.. ..|+++. |. -+.++.-+..++..-|++ +|.++| +-.. ++-
T Consensus 116 Ll~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-----DVAQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdv 187 (231)
T COG1889 116 LLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-----DVAQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDV 187 (231)
T ss_pred HHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE-----ecCCchHHHHHHHHHHHhccc---CCeEEEEEEeecccc
Confidence 45556668888888899988643 4777642 43 345566666777888888 675554 3332 222
Q ss_pred CCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 251 KEDEDQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 251 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
...+++- +++-.+-|++.||++.++.++.
T Consensus 188 T~dp~~v-f~~ev~kL~~~~f~i~e~~~Le 216 (231)
T COG1889 188 TADPEEV-FKDEVEKLEEGGFEILEVVDLE 216 (231)
T ss_pred cCCHHHH-HHHHHHHHHhcCceeeEEeccC
Confidence 2222222 3334456778899999998874
No 228
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=70.88 E-value=36 Score=31.76 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=64.1
Q ss_pred ccCcceEEEecCcc---------------cccchhhhhcCCCCCCceeeeccCcccCC---CCCeEEeccccccCChHHH
Q 043585 160 IERLGSMVDVGGGN---------------VLDLPHAVANTPQTENLKYVADDMFQFIP---PADAYFFMLFFHAFGGEDS 221 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~~~p---~~D~~~l~~vlh~~~d~~~ 221 (287)
+....++||||++. -+|.-++-+.....+||++..+|.+.-.| .+|.+++=-+ +.+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---e~P~-- 283 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---EKPA-- 283 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc---cCHH--
Confidence 35678999999988 57765555555668999999999988443 3777665444 2333
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC--CCCCHHHHHHHHHhCCC
Q 043585 222 LKILKKCREAIAGNGQRGKVLIMDIVINEKEDE--DQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 222 ~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~--~~rt~~e~~~ll~~aGf 271 (287)
++++-+.+-+.. + -.+-.|+.--++-.... -....+.+.+.|.++|.
T Consensus 284 -rva~lm~~Wl~~-g-~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 284 -RVAELMAQWLVN-G-WCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred -HHHHHHHHHHhc-C-cccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 455555566665 1 24566666666543211 11122335556667787
No 229
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=67.69 E-value=7.4 Score=36.66 Aligned_cols=86 Identities=14% Similarity=0.233 Sum_probs=60.4
Q ss_pred cccCcceEEEecCcc--------------------cccchhhhhcCC-------------CCCCceeeeccCccc-----
Q 043585 159 LIERLGSMVDVGGGN--------------------VLDLPHAVANTP-------------QTENLKYVADDMFQF----- 200 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~--------------------v~Dlp~vi~~a~-------------~~~Ri~~~~gd~~~~----- 200 (287)
........+|+|+|. ++|-|.-+.... +-..++++.|+|..+
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 345678899999998 333333222211 134578888999885
Q ss_pred -CCCCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC
Q 043585 201 -IPPADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE 250 (287)
Q Consensus 201 -~p~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~ 250 (287)
++.++++++.++. |+++...++ +++..-+++ |.|++-.+.+++-
T Consensus 269 I~~eatvi~vNN~~--Fdp~L~lr~-~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 269 IQTEATVIFVNNVA--FDPELKLRS-KEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred HhhcceEEEEeccc--CCHHHHHhh-HHHHhhCCC---cceEecccccccc
Confidence 3469999999986 566655555 477778899 9999999988874
No 230
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=65.95 E-value=13 Score=33.41 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=35.9
Q ss_pred cccCcceEEEecCcc-------------c--ccc-hhhhhcCC-------CCCCceeeeccCcc-cCCCCCeEEe
Q 043585 159 LIERLGSMVDVGGGN-------------V--LDL-PHAVANTP-------QTENLKYVADDMFQ-FIPPADAYFF 209 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~-------------v--~Dl-p~vi~~a~-------~~~Ri~~~~gd~~~-~~p~~D~~~l 209 (287)
+......||.||.|+ | ++. |.++.... .....+.+.||+++ ++|-+|.++.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVS 129 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeec
Confidence 566778999999999 1 111 33433332 15789999999999 7887887664
No 231
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=64.40 E-value=14 Score=30.72 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=36.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEE
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
.||.......+.+++.+.+++ |.-|++++. +....-......+...|++.||+.+.+
T Consensus 131 ~D~~~~~~~~i~~~~~~~~~~---g~Iil~Hd~---~~~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 131 RDWKNPGVESIVDRVVKNTKP---GDIILLHAS---DSAKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred CccCCCCHHHHHHHHHhcCCC---CCEEEEeCC---CCcHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 356544556788888888998 666666751 111111123566777778999998765
No 232
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=62.94 E-value=30 Score=32.12 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=71.7
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCccc--C-CCCCeEEecccc
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQF--I-PPADAYFFMLFF 213 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~--~-p~~D~~~l~~vl 213 (287)
..+.+|||.=.|. -+|+ |..++-.++ .++|+.+.||..+- . +.+|-|+|...-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 3478999987766 3454 444443332 67799999999993 3 359999887764
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcE
Q 043585 214 HAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 214 h~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 273 (287)
.+.+.+-.+.+++++ +|.+...+.+-.+.. .++...++.....+.|.+.
T Consensus 267 ------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~~--~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 267 ------SAHEFLPLALELLKD---GGIIHYYEFVPEDDI--EERPEKRIKSAARKGGYKV 315 (341)
T ss_pred ------cchhhHHHHHHHhhc---CcEEEEEeccchhhc--ccchHHHHHHHHhhccCcc
Confidence 345677777788888 888888887766543 3346778888888888643
No 233
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=62.86 E-value=6.1 Score=35.95 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhhH-hhhcccccccCcceEEEecCcc------------------cccc-hhhhhcCCC----CCCceeeeccCcc--cC
Q 043585 148 ATFI-VKDCCRTLIERLGSMVDVGGGN------------------VLDL-PHAVANTPQ----TENLKYVADDMFQ--FI 201 (287)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~vlDvGgG~------------------v~Dl-p~vi~~a~~----~~Ri~~~~gd~~~--~~ 201 (287)
.... ++.+ .......+||+++|. .+|. |++++.+++ .+|++++.+||.+ ..
T Consensus 7 ll~Evl~~L---~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDAL---AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhh---CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH
Q ss_pred C-----CCCeEEe
Q 043585 202 P-----PADAYFF 209 (287)
Q Consensus 202 p-----~~D~~~l 209 (287)
. .+|.|++
T Consensus 84 l~~~~~~vDgIl~ 96 (296)
T PRK00050 84 LAEGLGKVDGILL 96 (296)
T ss_pred HHcCCCccCEEEE
No 234
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=60.50 E-value=5.7 Score=33.47 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCCceeeeccCcc-cCC-CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHH
Q 043585 187 TENLKYVADDMFQ-FIP-PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKT 264 (287)
Q Consensus 187 ~~Ri~~~~gd~~~-~~p-~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ 264 (287)
-++++++.+..-+ ..+ .||+++.+-+- ....++.-+...+++ +|+++..-.-.. .-..++.+.
T Consensus 97 L~nv~v~~~R~E~~~~~~~fd~v~aRAv~------~l~~l~~~~~~~l~~---~G~~l~~KG~~~------~~El~~~~~ 161 (184)
T PF02527_consen 97 LSNVEVINGRAEEPEYRESFDVVTARAVA------PLDKLLELARPLLKP---GGRLLAYKGPDA------EEELEEAKK 161 (184)
T ss_dssp -SSEEEEES-HHHTTTTT-EEEEEEESSS------SHHHHHHHHGGGEEE---EEEEEEEESS--------HHHHHTHHH
T ss_pred CCCEEEEEeeecccccCCCccEEEeehhc------CHHHHHHHHHHhcCC---CCEEEEEcCCCh------HHHHHHHHh
Confidence 5678888888777 333 59999988775 234678888888999 899998753211 111345566
Q ss_pred HHHhCCCcEEEEEec
Q 043585 265 LFLDAGFTCCKITTM 279 (287)
Q Consensus 265 ll~~aGf~~~~~~~~ 279 (287)
-++..|.+...+...
T Consensus 162 ~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 162 AWKKLGLKVLSVPEF 176 (184)
T ss_dssp HHHCCCEEEEEEEEE
T ss_pred HHHHhCCEEeeeccc
Confidence 666778877777665
No 235
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=60.47 E-value=78 Score=27.08 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=11.5
Q ss_pred ccCcceEEEecCcc
Q 043585 160 IERLGSMVDVGGGN 173 (287)
Q Consensus 160 ~~~~~~vlDvGgG~ 173 (287)
+....+|+|+|+..
T Consensus 67 l~p~~~VlD~G~AP 80 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAP 80 (232)
T ss_pred cCCCCEEEEccCCC
Confidence 56688999999955
No 236
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=59.87 E-value=43 Score=30.93 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC------------------------------------CCCCHHHHHHH
Q 043585 222 LKILKKCREAIAGNGQRGKVLIMDIVINEKEDE------------------------------------DQRTDKEWKTL 265 (287)
Q Consensus 222 ~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~------------------------------------~~rt~~e~~~l 265 (287)
..+|+.=++-|.| ||++++.=.-.++.... ..||.+|+++.
T Consensus 163 ~~FL~~Ra~ELv~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~ 239 (334)
T PF03492_consen 163 SSFLKARAEELVP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAI 239 (334)
T ss_dssp HHHHHHHHHHEEE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHH
T ss_pred HHHHHHhhheecc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHH
Confidence 4555555677899 99999887776663211 66899999999
Q ss_pred HHhCC-CcEEEEE
Q 043585 266 FLDAG-FTCCKIT 277 (287)
Q Consensus 266 l~~aG-f~~~~~~ 277 (287)
+++.| |++.++.
T Consensus 240 I~~~gsF~I~~le 252 (334)
T PF03492_consen 240 IEEEGSFEIEKLE 252 (334)
T ss_dssp HHHHTSEEEEEEE
T ss_pred HhcCCCEEEEEEE
Confidence 99775 6654443
No 237
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=59.36 E-value=70 Score=30.27 Aligned_cols=84 Identities=13% Similarity=0.259 Sum_probs=55.9
Q ss_pred eeeeccCcc-cCCC--CCeEEeccccccCCh------------------------------------HHHHHHHHHHHHH
Q 043585 191 KYVADDMFQ-FIPP--ADAYFFMLFFHAFGG------------------------------------EDSLKILKKCREA 231 (287)
Q Consensus 191 ~~~~gd~~~-~~p~--~D~~~l~~vlh~~~d------------------------------------~~~~~iL~~~~~a 231 (287)
.-++|.|+. -+|. .++++.+..||=.+. .|-..+|+.=++-
T Consensus 147 ~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~E 226 (386)
T PLN02668 147 AGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQE 226 (386)
T ss_pred EecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346689999 5773 788888888875442 0223455555677
Q ss_pred hcCCCCCcEEEEEeeccCCCC----C-C---------------------------------CCCCHHHHHHHHHhCC-Cc
Q 043585 232 IAGNGQRGKVLIMDIVINEKE----D-E---------------------------------DQRTDKEWKTLFLDAG-FT 272 (287)
Q Consensus 232 l~~~~~~g~lli~e~~~~~~~----~-~---------------------------------~~rt~~e~~~ll~~aG-f~ 272 (287)
|.| ||++++.=.-.+... . . ..+|.+|+++.+++.| |.
T Consensus 227 Lvp---GG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 227 MKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred hcc---CcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 899 999998754332110 0 0 6689999999999887 55
Q ss_pred EEEEE
Q 043585 273 CCKIT 277 (287)
Q Consensus 273 ~~~~~ 277 (287)
+.++.
T Consensus 304 I~~le 308 (386)
T PLN02668 304 IDKLE 308 (386)
T ss_pred eeeeE
Confidence 55444
No 238
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=57.67 E-value=15 Score=34.70 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=47.7
Q ss_pred cceEEEecCcc-----------------cccc-hhhhhcCCC------CCCceeeeccCccc---CCCCCeEEecccccc
Q 043585 163 LGSMVDVGGGN-----------------VLDL-PHAVANTPQ------TENLKYVADDMFQF---IPPADAYFFMLFFHA 215 (287)
Q Consensus 163 ~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~~---~p~~D~~~l~~vlh~ 215 (287)
..+++|+++|. ..|. |..++.+++ .+.+++..+|.... .+.+|+|++ +..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l-DP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI-DPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE-CCC--
Confidence 35899999999 3343 445554442 34566888888662 235999987 332
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
.. ...+|..+.+++++ +|.|+|.
T Consensus 135 -Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 23577887788898 7888776
No 239
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.65 E-value=24 Score=32.31 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=57.2
Q ss_pred eEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC------------------CCCCHHHHHHHHH
Q 043585 206 AYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDE------------------DQRTDKEWKTLFL 267 (287)
Q Consensus 206 ~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~------------------~~rt~~e~~~ll~ 267 (287)
+++.=.+|.+.+++++..+|+.+.+.++. +.+++.|.+.+.++-. ...|.+..++-+-
T Consensus 191 i~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~ 266 (335)
T KOG2918|consen 191 IFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFL 266 (335)
T ss_pred eehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHH
Confidence 45555688899999999999999998885 8999999998665422 3458888999999
Q ss_pred hCCCcEEEEEec
Q 043585 268 DAGFTCCKITTM 279 (287)
Q Consensus 268 ~aGf~~~~~~~~ 279 (287)
++||.-+.+.+.
T Consensus 267 ~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 267 KAGWEYVIAVDM 278 (335)
T ss_pred hcCCceeehhhH
Confidence 999999887764
No 240
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.30 E-value=52 Score=28.98 Aligned_cols=118 Identities=9% Similarity=0.123 Sum_probs=71.3
Q ss_pred hhhcccccccCcceEEEecCcc----------------cccc--hhhhhcCCCCCCceeeec-cCcccCC-----CCCeE
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN----------------VLDL--PHAVANTPQTENLKYVAD-DMFQFIP-----PADAY 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~----------------v~Dl--p~vi~~a~~~~Ri~~~~g-d~~~~~p-----~~D~~ 207 (287)
++.| . -......++|||.++ -+|. -+.....+..+||...+. |+..-.| ..|++
T Consensus 71 le~F-~-l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 71 LEEF-E-LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred HHhc-C-cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeE
Confidence 6666 3 235678999999988 1221 112222334788877666 5554222 24444
Q ss_pred EeccccccCChHHHHHHHHHHHHHhcCCCCCcEEE-EEeeccCCCCCC------------CCCCHHHHHHHHHhCCCcEE
Q 043585 208 FFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVL-IMDIVINEKEDE------------DQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 208 ~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~ll-i~e~~~~~~~~~------------~~rt~~e~~~ll~~aGf~~~ 274 (287)
++ |.|--....||-.+...+++ ++-++ ++-+-....+.. ..+-..++..++++.||++.
T Consensus 149 v~-----DvSFISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 149 VI-----DVSFISLKLILPALLLLLKD---GGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred EE-----EeehhhHHHHHHHHHHhcCC---CceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 33 44555667888988888998 66554 333322211110 44567888999999999998
Q ss_pred EEEec
Q 043585 275 KITTM 279 (287)
Q Consensus 275 ~~~~~ 279 (287)
.+..-
T Consensus 221 gl~~S 225 (245)
T COG1189 221 GLIKS 225 (245)
T ss_pred eeEcc
Confidence 88754
No 241
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=50.53 E-value=44 Score=30.25 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=29.2
Q ss_pred cCcceEEEecCcc-----------------cccc-hhhhhcCCC-------CCCceee----eccCcccCC---C-CCeE
Q 043585 161 ERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ-------TENLKYV----ADDMFQFIP---P-ADAY 207 (287)
Q Consensus 161 ~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~-------~~Ri~~~----~gd~~~~~p---~-~D~~ 207 (287)
.....++|+|||+ -+|. +..+..|.+ .+||..+ .+|.+.+.| + .|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 4456899999999 3444 223333322 7888887 566666544 3 5654
Q ss_pred E
Q 043585 208 F 208 (287)
Q Consensus 208 ~ 208 (287)
+
T Consensus 227 v 227 (328)
T KOG2904|consen 227 V 227 (328)
T ss_pred e
Confidence 4
No 242
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=49.68 E-value=10 Score=29.20 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.1
Q ss_pred cCcceEEEecCcc
Q 043585 161 ERLGSMVDVGGGN 173 (287)
Q Consensus 161 ~~~~~vlDvGgG~ 173 (287)
.....+||||||+
T Consensus 57 ~~~~~FVDlGCGN 69 (112)
T PF07757_consen 57 QKFQGFVDLGCGN 69 (112)
T ss_pred CCCCceEEccCCc
Confidence 3567899999999
No 243
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=48.66 E-value=44 Score=29.50 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=44.9
Q ss_pred hhhcccccccCcceEEEecCcc---------------cccc-hhhhhcC----CCCCCceeeeccCcc-cCCC----CCe
Q 043585 152 VKDCCRTLIERLGSMVDVGGGN---------------VLDL-PHAVANT----PQTENLKYVADDMFQ-FIPP----ADA 206 (287)
Q Consensus 152 ~~~~~~~~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a----~~~~Ri~~~~gd~~~-~~p~----~D~ 206 (287)
++.. +..+...|+|||.|. +++. +..++.. ...+|++++.+|+++ ..+. ...
T Consensus 23 v~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~ 99 (262)
T PF00398_consen 23 VDAL---DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPL 99 (262)
T ss_dssp HHHH---TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEE
T ss_pred HHhc---CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCce
Confidence 4555 456788999999999 2222 2222222 237899999999999 4433 446
Q ss_pred EEeccccccCChHHHHHHHHHHHH
Q 043585 207 YFFMLFFHAFGGEDSLKILKKCRE 230 (287)
Q Consensus 207 ~~l~~vlh~~~d~~~~~iL~~~~~ 230 (287)
.+++++=++.+. .|+.++..
T Consensus 100 ~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 100 LVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp EEEEEETGTGHH----HHHHHHHH
T ss_pred EEEEEecccchH----HHHHHHhh
Confidence 667776665554 46666655
No 244
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=47.96 E-value=31 Score=27.02 Aligned_cols=31 Identities=26% Similarity=0.071 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEecCC-ccce
Q 043585 255 DQRTDKEWKTLFLDAGFTCCKITTMFG-LKSL 285 (287)
Q Consensus 255 ~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~s~ 285 (287)
.-+|.++++.++++|||++.+.+.-+. ..++
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 457899999999999999999997753 4443
No 245
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=47.95 E-value=21 Score=33.79 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=57.0
Q ss_pred cccc-hhhhhcCCC--------CCCceeeeccCcccCC-------CCCeEEec--------cccccCC-hHHHHHHHHHH
Q 043585 174 VLDL-PHAVANTPQ--------TENLKYVADDMFQFIP-------PADAYFFM--------LFFHAFG-GEDSLKILKKC 228 (287)
Q Consensus 174 v~Dl-p~vi~~a~~--------~~Ri~~~~gd~~~~~p-------~~D~~~l~--------~vlh~~~-d~~~~~iL~~~ 228 (287)
.+|+ ...++.|++ .+|+.|+.+|.|+-+. .||+|++= ..+ |+ ..+=.+|+..+
T Consensus 245 ~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~--~~~~rdy~~l~~~~ 322 (393)
T COG1092 245 SVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQE--FSAQRDYKDLNDLA 322 (393)
T ss_pred EEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccc--hhHHHHHHHHHHHH
Confidence 5666 345555543 6789999999999432 49999872 122 21 23346789999
Q ss_pred HHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhC
Q 043585 229 REAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDA 269 (287)
Q Consensus 229 ~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~a 269 (287)
.+.|+| ||.++++.+- ...+.+++.+++.++
T Consensus 323 ~~iL~p---gG~l~~~s~~-------~~~~~~~f~~~i~~a 353 (393)
T COG1092 323 LRLLAP---GGTLVTSSCS-------RHFSSDLFLEIIARA 353 (393)
T ss_pred HHHcCC---CCEEEEEecC-------CccCHHHHHHHHHHH
Confidence 999999 9999887543 345667777766654
No 246
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=47.77 E-value=43 Score=27.94 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 228 CREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 228 ~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
...++++ |-+++|+|-++...+ |..-..++++++|++++.+...
T Consensus 109 ~~~~l~~---G~rVlIVDDllaTGg-----T~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 109 HKDALKP---GDRVLIVDDLLATGG-----TALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred EhhhCCC---CCEEEEEecchhcCh-----HHHHHHHHHHHCCCEEEEEEEE
Confidence 3467888 899999999998654 7899999999999999877654
No 247
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=47.42 E-value=37 Score=30.27 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=42.7
Q ss_pred cccCcceEEEecCcc---------------cccc-hhhhhcCC----CCCCceeeeccCcc-cCCC--CCeEEecccccc
Q 043585 159 LIERLGSMVDVGGGN---------------VLDL-PHAVANTP----QTENLKYVADDMFQ-FIPP--ADAYFFMLFFHA 215 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~---------------v~Dl-p~vi~~a~----~~~Ri~~~~gd~~~-~~p~--~D~~~l~~vlh~ 215 (287)
......+|+.||.|. .+.+ +..++..+ ..++++.+.||+.+ .+|. .-..+.+|+=++
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 445578999999999 2222 22222222 37899999999999 6774 234455666666
Q ss_pred CChHHHHHHHH
Q 043585 216 FGGEDSLKILK 226 (287)
Q Consensus 216 ~~d~~~~~iL~ 226 (287)
.+-+-..++|+
T Consensus 107 Isspii~kll~ 117 (259)
T COG0030 107 ISSPILFKLLE 117 (259)
T ss_pred ccHHHHHHHHh
Confidence 66654444443
No 248
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=47.35 E-value=8.5 Score=31.44 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=54.2
Q ss_pred cCcceEEEecCcc-cccchh-hhhcCCCCCCceeeeccCcccCCCCCeEEecccccc-CChHHHHHHHHHHHHHhcCCCC
Q 043585 161 ERLGSMVDVGGGN-VLDLPH-AVANTPQTENLKYVADDMFQFIPPADAYFFMLFFHA-FGGEDSLKILKKCREAIAGNGQ 237 (287)
Q Consensus 161 ~~~~~vlDvGgG~-v~Dlp~-vi~~a~~~~Ri~~~~gd~~~~~p~~D~~~l~~vlh~-~~d~~~~~iL~~~~~al~~~~~ 237 (287)
.+...+||+||+. -.-.|+ +|+-....+++... ...|+..+|++--++-. -.++.+..+++.+.++-..
T Consensus 34 ~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~-----~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~--- 105 (153)
T PF00549_consen 34 GGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIE-----AADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAE--- 105 (153)
T ss_dssp CTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHH-----HTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHT---
T ss_pred CCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHH-----hcCCCccEEEEEeccccCchHHHHHHHHHHHHhcccc---
Confidence 4567999999998 233332 12211001111111 11356777777777763 4556666676666555422
Q ss_pred CcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcE
Q 043585 238 RGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 238 ~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 273 (287)
+..+-|+=.+......++.|+ +-.+.|+++|..+
T Consensus 106 ~~~~pvVa~v~GT~~dpq~~~--~~~~~L~~~G~~v 139 (153)
T PF00549_consen 106 GRKKPVVARVCGTNADPQGRM--GQAGALEDAGVIV 139 (153)
T ss_dssp TT-SEEEEEEESTTCHTTSCH--HHHHHHHCTTCSC
T ss_pred CCCCcEEEEeeeecCCCCCcH--HHHHHHHhCCCcc
Confidence 344555555554443334443 6677888888754
No 249
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=47.15 E-value=51 Score=30.10 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=51.5
Q ss_pred ccCcceEEEecCcc-----------------cccc-hhhhhcCCC----------CCCceeeeccCccc---CC--CCCe
Q 043585 160 IERLGSMVDVGGGN-----------------VLDL-PHAVANTPQ----------TENLKYVADDMFQF---IP--PADA 206 (287)
Q Consensus 160 ~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~~----------~~Ri~~~~gd~~~~---~p--~~D~ 206 (287)
.+++++++=||||. ++|. ..|++..++ .+||....||-+.- .+ .+|+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 35789999999998 3332 334444332 78999999998872 33 4898
Q ss_pred EEeccccccCChH---HHHHHHHHHHHHhcCCCCCcEEEEEee
Q 043585 207 YFFMLFFHAFGGE---DSLKILKKCREAIAGNGQRGKVLIMDI 246 (287)
Q Consensus 207 ~~l~~vlh~~~d~---~~~~iL~~~~~al~~~~~~g~lli~e~ 246 (287)
++.=.- .-.-+. --.....-+.+||++ +|.+++...
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~e 237 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKG---DGVVCTQGE 237 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCC---CcEEEEecc
Confidence 875321 001111 012345567789999 888777653
No 250
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=46.73 E-value=53 Score=30.87 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.0
Q ss_pred CHHHHHHHHHhCCCcEEEEE
Q 043585 258 TDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 258 t~~e~~~ll~~aGf~~~~~~ 277 (287)
+.+.|+..++.|||+.+.+.
T Consensus 311 ~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 311 RLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred chhHHHHHHHhcCCeecCCC
Confidence 67999999999999876554
No 251
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=46.60 E-value=20 Score=29.46 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=50.8
Q ss_pred CcceEEEecCcc------------------cccchhhhhcCCCCCCceeeeccCccc---------C----CCCCeEEec
Q 043585 162 RLGSMVDVGGGN------------------VLDLPHAVANTPQTENLKYVADDMFQF---------I----PPADAYFFM 210 (287)
Q Consensus 162 ~~~~vlDvGgG~------------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~~---------~----p~~D~~~l~ 210 (287)
+..++||+|++. .+|+.+.- ....+.++.+|++++ . ..+|+|+.=
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 458999999988 24443321 124456666666542 1 136776543
Q ss_pred c---cccc------CChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 043585 211 L---FFHA------FGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTM 279 (287)
Q Consensus 211 ~---vlh~------~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 279 (287)
- +-.+ -+-+-+...|.-+.+.|++ ||.+++--.-.++ . .++...+.. .|+.+.++..
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~~~~~~-------~-~~~~~~l~~-~F~~v~~~Kp 164 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKVFKGPE-------I-EELIYLLKR-CFSKVKIVKP 164 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEESSSTT-------S-HHHHHHHHH-HHHHEEEEE-
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEeccCcc-------H-HHHHHHHHh-CCeEEEEEEC
Confidence 3 1111 1122334444445566899 8877764332111 1 266666665 4766666544
No 252
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=44.11 E-value=28 Score=30.59 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCCCcEEEE---EeeccCCCCCC----CCCCHHHHHHHHHhCCCcEEE
Q 043585 223 KILKKCREAIAGNGQRGKVLI---MDIVINEKEDE----DQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 223 ~iL~~~~~al~~~~~~g~lli---~e~~~~~~~~~----~~rt~~e~~~ll~~aGf~~~~ 275 (287)
+....++..++.+ ||.+-- +-+.....+.- ..-+.++..+.+-++|-..+.
T Consensus 108 Rt~~~ir~~f~K~--gg~l~~~gsv~~~Fe~kG~i~~~~~~~~~d~~~e~aieaGAedv~ 165 (238)
T TIGR01033 108 RTASEVRSAFNKN--GGSLGEPGSVSYLFSRKGVIEVPKNEVDEEDLMEAAIEAGAEDID 165 (238)
T ss_pred hHHHHHHHHHHHc--CCeeCCCCceeeeeecceEEEECCCCCCHHHHHHHHHhCCCceee
Confidence 4556666666663 555421 12222221110 123456666666667776654
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=41.18 E-value=7.4 Score=33.92 Aligned_cols=14 Identities=7% Similarity=0.619 Sum_probs=12.4
Q ss_pred CCCceeeeccCccc
Q 043585 187 TENLKYVADDMFQF 200 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~ 200 (287)
.+||+|+.||+++-
T Consensus 142 ~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 142 PDRITFICGDFLDL 155 (263)
T ss_pred CceeEEEechHHHH
Confidence 67999999999983
No 254
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=40.34 E-value=97 Score=23.27 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=42.4
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC-----------------CC--CCCCHHHHHHHHHhCCC
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE-----------------DE--DQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~-----------------~~--~~rt~~e~~~ll~~aGf 271 (287)
.+|=+++.++..++|+++..-.+ +++++- . -|.+. .+ ..-+++++.+.++++||
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifT-f-AP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~ 75 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFT-F-APRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGW 75 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc-----CcEEEE-E-CCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCC
Confidence 45557888899999999865443 455442 1 12111 00 23368999999999999
Q ss_pred cEEEEEecC
Q 043585 272 TCCKITTMF 280 (287)
Q Consensus 272 ~~~~~~~~~ 280 (287)
++.+...+.
T Consensus 76 ~~~r~~ris 84 (97)
T PF07109_consen 76 RIGRTERIS 84 (97)
T ss_pred eeeeccccc
Confidence 999888773
No 255
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=40.27 E-value=59 Score=31.77 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=73.9
Q ss_pred cccCcceEEEecCcc------cccchh----hhhcCCC------CCCc-eeeeccCcccCC----CCCeEEeccccccC-
Q 043585 159 LIERLGSMVDVGGGN------VLDLPH----AVANTPQ------TENL-KYVADDMFQFIP----PADAYFFMLFFHAF- 216 (287)
Q Consensus 159 ~~~~~~~vlDvGgG~------v~Dlp~----vi~~a~~------~~Ri-~~~~gd~~~~~p----~~D~~~l~~vlh~~- 216 (287)
...+.+.|+|..+|. +.|.|- |+..... .+|- -=+-+|..++++ +||++...+++-.+
T Consensus 362 ~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~ 441 (506)
T PF03141_consen 362 KWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK 441 (506)
T ss_pred cccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc
Confidence 345678899999988 455442 2222211 3442 224568777654 49999999988776
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 217 GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 217 ~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
..-+...||-.+-+.|+| +|.++|-|.+ -...+.+.++..-.++......-.|
T Consensus 442 ~rC~~~~illEmDRILRP---~G~~iiRD~~---------~vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 442 DRCEMEDILLEMDRILRP---GGWVIIRDTV---------DVLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred ccccHHHHHHHhHhhcCC---CceEEEeccH---------HHHHHHHHHHHhCcceEEEEecCCC
Confidence 444556788899999999 9999887643 2356777788777777665544443
No 256
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=39.73 E-value=42 Score=29.46 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEE---EeeccCCCCC----CCCCCHHHHHHHHHhCCCcEEE
Q 043585 223 KILKKCREAIAGNGQRGKVLI---MDIVINEKED----EDQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 223 ~iL~~~~~al~~~~~~g~lli---~e~~~~~~~~----~~~rt~~e~~~ll~~aGf~~~~ 275 (287)
+-...++.++..+ ||.+-- +-+..+..+- ....+.+++.+.+-+||...+.
T Consensus 108 RTas~vR~~F~K~--GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ieagaeDv~ 165 (241)
T COG0217 108 RTASNVRSAFNKN--GGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGAEDVE 165 (241)
T ss_pred hhHHHHHHHHHhc--CCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHHCCchhhh
Confidence 4557777777774 565542 3333333221 1346778887777778776443
No 257
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=39.57 E-value=46 Score=32.62 Aligned_cols=101 Identities=13% Similarity=0.181 Sum_probs=56.5
Q ss_pred CcceEEEecCcc-----------------cccc--hhhhhcCCC-----CCCceeeeccCcc---cCC--CCCeEEeccc
Q 043585 162 RLGSMVDVGGGN-----------------VLDL--PHAVANTPQ-----TENLKYVADDMFQ---FIP--PADAYFFMLF 212 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dl--p~vi~~a~~-----~~Ri~~~~gd~~~---~~p--~~D~~~l~~v 212 (287)
+...+||||||. .+|. +.+...++. -.++.++.+|+.. .+| +.|.+++..-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 467899999999 3443 333322221 4567777776532 244 2565544321
Q ss_pred cccCChHH-------HHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCC-CcEE
Q 043585 213 FHAFGGED-------SLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAG-FTCC 274 (287)
Q Consensus 213 lh~~~d~~-------~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aG-f~~~ 274 (287)
.-|+... ....|+.+++.|+| ||.|.+..-..+ + ..+....+.+.+ |+..
T Consensus 427 -DPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~TD~~~-------y-~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 427 -DPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFASDIEN-------Y-FYEAIELIQQNGNFEII 484 (506)
T ss_pred -CCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEcCCHH-------H-HHHHHHHHHhCCCeEec
Confidence 1232211 24688889999999 999987642211 1 222255566665 7754
No 258
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=39.50 E-value=54 Score=26.98 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-----CCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 222 LKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-----DQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 222 ~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-----~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
+++++-++++|.| ||.|+| |.+.+..... ...-..-+.-.|-++||+..+-+-.|
T Consensus 73 ~~l~~~l~~~lsp---g~~lfV-eYv~DrET~~~lqkG~~p~atrLGfeL~k~GftwfkdWY~P 132 (192)
T COG4353 73 VKLYKVLYNFLSP---GGKLFV-EYVRDRETRYRLQKGKPPVATRLGFELLKAGFTWFKDWYFP 132 (192)
T ss_pred HHHHHHHHHhcCC---CCceEE-EEEechhHHHHHHcCCCCccchhhHHHHhCcceeeeeeecc
Confidence 6899999999999 777765 6666543211 22233445556789999999888664
No 259
>PRK00110 hypothetical protein; Validated
Probab=38.26 E-value=42 Score=29.64 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=34.6
Q ss_pred eEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEE---EeeccCCCCCC--CCCCHHHHHHHHHhCCCcEEEE
Q 043585 206 AYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLI---MDIVINEKEDE--DQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 206 ~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli---~e~~~~~~~~~--~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
+.++..+| +|.. -+....++.+++.+ ||.+-- +.+.....+.- ..-+.+++.+.+-++|-..+..
T Consensus 95 vaiiVe~l---TDN~-nRt~~~vR~~f~K~--gG~l~~~Gsv~~~Fe~kG~i~~~~~~~d~~~e~aieaGaeDv~~ 164 (245)
T PRK00110 95 VAIIVEAL---TDNR-NRTAAEVRHAFSKN--GGNLGETGSVSYMFDRKGVIVIEPLDEDELMEAALEAGAEDVET 164 (245)
T ss_pred eEEEEEEe---cCCH-HHHHHHHHHHHHhc--CceeCCCcceEEEeccceEEEeCCCCHHHHHHHHHhCCCCEeec
Confidence 44444444 4432 35667788888874 565522 22233322210 1014677777777888876543
No 260
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=37.82 E-value=12 Score=35.07 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=25.9
Q ss_pred ceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcc
Q 043585 164 GSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQ 199 (287)
Q Consensus 164 ~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~ 199 (287)
.++||++||. .+|. +..++.+++ .++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999 3443 555555543 4589999999866
No 261
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=37.21 E-value=62 Score=23.93 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=38.8
Q ss_pred ceeeeccCcc---cCC---CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC
Q 043585 190 LKYVADDMFQ---FIP---PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE 250 (287)
Q Consensus 190 i~~~~gd~~~---~~p---~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~ 250 (287)
+.+..+|... ++. .+|++ .....+.+.+ ....++.+.+.++| +|.+++.+.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 100 VDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred eEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 5677777664 333 38999 5555544444 56889999999999 8999888776543
No 262
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=35.41 E-value=12 Score=32.05 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=42.1
Q ss_pred ccCcceEEEecCcc-----------------cccc-hhhhhcCC-------CCCCceeeeccCcccCC--CCCeEEeccc
Q 043585 160 IERLGSMVDVGGGN-----------------VLDL-PHAVANTP-------QTENLKYVADDMFQFIP--PADAYFFMLF 212 (287)
Q Consensus 160 ~~~~~~vlDvGgG~-----------------v~Dl-p~vi~~a~-------~~~Ri~~~~gd~~~~~p--~~D~~~l~~v 212 (287)
.....+|+|+-||. -.|+ |..++-.+ -.++|....+|..+-.+ .+|-|+|.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~-- 176 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN-- 176 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC--
Confidence 35678999999988 3444 33333322 27889999999988433 38866654
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCcEE
Q 043585 213 FHAFGGEDSLKILKKCREAIAGNGQRGKV 241 (287)
Q Consensus 213 lh~~~d~~~~~iL~~~~~al~~~~~~g~l 241 (287)
++. .+..+|..+.+.+++ +|.+
T Consensus 177 ---lp~-~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 177 ---LPE-SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEE---EEEE
T ss_pred ---ChH-HHHHHHHHHHHHhcC---CcEE
Confidence 332 345688888888888 6643
No 263
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=35.39 E-value=3e+02 Score=23.98 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=50.1
Q ss_pred CCCceeeeccCcccCC---CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHH
Q 043585 187 TENLKYVADDMFQFIP---PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWK 263 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~~p---~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~ 263 (287)
.+||+...+|-+.++. +.|+++..-+ .-.-...||..-.+-++. =-++++. |. -...+++
T Consensus 66 ~~~i~vr~~dgl~~l~~~d~~d~ivIAGM----GG~lI~~ILee~~~~l~~---~~rlILQ----Pn------~~~~~LR 128 (226)
T COG2384 66 SERIDVRLGDGLAVLELEDEIDVIVIAGM----GGTLIREILEEGKEKLKG---VERLILQ----PN------IHTYELR 128 (226)
T ss_pred cceEEEeccCCccccCccCCcCEEEEeCC----cHHHHHHHHHHhhhhhcC---cceEEEC----CC------CCHHHHH
Confidence 8999999999988643 3888876643 344466788887777774 2344442 11 1256889
Q ss_pred HHHHhCCCcEEEE
Q 043585 264 TLFLDAGFTCCKI 276 (287)
Q Consensus 264 ~ll~~aGf~~~~~ 276 (287)
+||.+.+|.+..-
T Consensus 129 ~~L~~~~~~I~~E 141 (226)
T COG2384 129 EWLSANSYEIKAE 141 (226)
T ss_pred HHHHhCCceeeee
Confidence 9999999987543
No 264
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=35.15 E-value=13 Score=32.56 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCCCcEEEE---EeeccCCCCCC----CCCCHHHHHHHHHhCCCcEEE
Q 043585 222 LKILKKCREAIAGNGQRGKVLI---MDIVINEKEDE----DQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 222 ~~iL~~~~~al~~~~~~g~lli---~e~~~~~~~~~----~~rt~~e~~~ll~~aGf~~~~ 275 (287)
.+....++.+++.+ ||++-= +-+.....+-- ..-+.+++.+..-++|-..++
T Consensus 103 nRt~~~ir~~~~K~--gg~l~~~gsv~~~F~~kG~i~~~~~~~~~d~~~e~aIe~GaeDve 161 (234)
T PF01709_consen 103 NRTVSDIRSIFKKN--GGSLGPSGSVSFMFERKGVIEVSKKDLDEDELMEDAIEAGAEDVE 161 (234)
T ss_dssp HHHHHHHHHHHHTT--T-EEE-TTSSGGGEEEEEEEEEEHCCS-HHHHHHHHHHHTESEEE
T ss_pred hHHHHHHHHHHHHc--CceeCCCCcceeeeeeeEEEEEEeCCCChHHHHHHHHhCCCcEee
Confidence 35556677777763 555432 11222111100 344566666666666666555
No 265
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=35.15 E-value=14 Score=34.39 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=26.0
Q ss_pred ceEEEecCcc---------------cccc-hhhhhcCCC------CCCceeeeccCcc
Q 043585 164 GSMVDVGGGN---------------VLDL-PHAVANTPQ------TENLKYVADDMFQ 199 (287)
Q Consensus 164 ~~vlDvGgG~---------------v~Dl-p~vi~~a~~------~~Ri~~~~gd~~~ 199 (287)
.++||++||. .+|. ++.++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999 3443 555665553 3579999999876
No 266
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=34.46 E-value=1.9e+02 Score=27.16 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=45.8
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccC-----CC-------------------CCCCCCCHHHHHHHH
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVIN-----EK-------------------EDEDQRTDKEWKTLF 266 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~-----~~-------------------~~~~~rt~~e~~~ll 266 (287)
+..--|+|++ +.=++++.+++... |++++|-=+... .. ..+++-|.+|+.++.
T Consensus 72 ~~~~l~~d~~-i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii 148 (363)
T COG1902 72 GQPGLWSDAQ-IPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVI 148 (363)
T ss_pred CCCccCChhH-hHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHH
Confidence 4444677776 78889999999983 666665211111 00 011556778877765
Q ss_pred ----------HhCCCcEEEEEecCCc
Q 043585 267 ----------LDAGFTCCKITTMFGL 282 (287)
Q Consensus 267 ----------~~aGf~~~~~~~~~~~ 282 (287)
.+|||..++++..+|+
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGY 174 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGY 174 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccch
Confidence 3689999999988875
No 267
>PRK12378 hypothetical protein; Provisional
Probab=33.95 E-value=50 Score=29.00 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=30.3
Q ss_pred eEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEE---EeeccCCCCCC---CCCCHHHHHHHHHhCCC
Q 043585 206 AYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLI---MDIVINEKEDE---DQRTDKEWKTLFLDAGF 271 (287)
Q Consensus 206 ~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli---~e~~~~~~~~~---~~rt~~e~~~ll~~aGf 271 (287)
+.++..+| +|.. -+....++.+++.+ ||.|.- +-+.....+-- .. +.++..+..-++|-
T Consensus 92 vaiiVe~l---TDN~-nRt~~~vr~~f~K~--gg~l~~~gsv~~~Fe~kG~i~i~~~-~~d~~~e~aieaGa 156 (235)
T PRK12378 92 VMVIVECL---TDNV-NRTVANVRSAFNKN--GGNLGTSGSVAFMFDHKGVFVFEGD-DEDELLEALIDADV 156 (235)
T ss_pred cEEEEEEC---CCCH-HHHHHHHHHHHhhc--CCeECCCCceeeeeecceEEEeCCC-CHHHHHHHHHhCCC
Confidence 44444444 4432 35667788888874 566531 12222221110 12 56777777777766
No 268
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=33.64 E-value=2.1e+02 Score=24.83 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=45.1
Q ss_pred ceEEEecCcc-----------------cccc-hhhhhcC-C---C--CCCceeeeccCcccC----C--CCCeEEecccc
Q 043585 164 GSMVDVGGGN-----------------VLDL-PHAVANT-P---Q--TENLKYVADDMFQFI----P--PADAYFFMLFF 213 (287)
Q Consensus 164 ~~vlDvGgG~-----------------v~Dl-p~vi~~a-~---~--~~Ri~~~~gd~~~~~----p--~~D~~~l~~vl 213 (287)
..+|+||+|. .++. .+++..+ + + -.++..+.+|..+-+ | +.|-|.+.. =
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-P 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-P 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-C
Confidence 5899999999 3333 2222222 1 1 238888988887732 2 133332211 0
Q ss_pred ccCChHH-------HHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 214 HAFGGED-------SLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 214 h~~~d~~-------~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
.-|+... ....|+.+.+.|+| ||.|.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 1122211 24688889999999 99988753
No 269
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=32.79 E-value=96 Score=23.68 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 255 DQRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 255 ~~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
.++-..|+..|+.+.|.+..+..=.+|
T Consensus 58 G~~ALaELv~wl~~~G~~f~EaVl~p~ 84 (113)
T PF11432_consen 58 GERALAELVRWLQERGARFYEAVLSPS 84 (113)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-GG
T ss_pred HHHHHHHHHHHHHHcCCchhheecCHH
Confidence 667889999999999997766553333
No 270
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=32.41 E-value=13 Score=31.29 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=47.4
Q ss_pred cCcceEEEecCcc----------------cccc-hhhhhcCCC-------CCCceeeeccCcccC-----C--CCCeEEe
Q 043585 161 ERLGSMVDVGGGN----------------VLDL-PHAVANTPQ-------TENLKYVADDMFQFI-----P--PADAYFF 209 (287)
Q Consensus 161 ~~~~~vlDvGgG~----------------v~Dl-p~vi~~a~~-------~~Ri~~~~gd~~~~~-----p--~~D~~~l 209 (287)
-...++||+=+|+ .+|. +..++..++ .++++.+.+|.+..+ + .+|+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3568999998888 3443 333333332 457889999977632 2 4899877
Q ss_pred ccccccCChHHHHHHHHHHH--HHhcCCCCCcEEEEEeeccC
Q 043585 210 MLFFHAFGGEDSLKILKKCR--EAIAGNGQRGKVLIMDIVIN 249 (287)
Q Consensus 210 ~~vlh~~~d~~~~~iL~~~~--~al~~~~~~g~lli~e~~~~ 249 (287)
-=-...... ...+|+.+. ..|++ +.++|+|.-..
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 543333221 234555554 66776 56777787554
No 271
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=31.72 E-value=95 Score=31.39 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred eeeeccCcccCC----CCCeEEec-----cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHH
Q 043585 191 KYVADDMFQFIP----PADAYFFM-----LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKE 261 (287)
Q Consensus 191 ~~~~gd~~~~~p----~~D~~~l~-----~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e 261 (287)
+..-||+.+.++ .+|++++= ..=..|+++ +|+.+++.++| ||++.-.. +...
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~----~~~~l~~~~~~---~~~~~t~t------------~a~~ 210 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPN----LFNALARLARP---GATLATFT------------SAGF 210 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCCCCCccChhhccHH----HHHHHHHHhCC---CCEEEEee------------hHHH
Confidence 344555554222 25655542 222348874 89999999999 88887542 3567
Q ss_pred HHHHHHhCCCcEEEEEe
Q 043585 262 WKTLFLDAGFTCCKITT 278 (287)
Q Consensus 262 ~~~ll~~aGf~~~~~~~ 278 (287)
.++-|.++||++.++..
T Consensus 211 vr~~l~~~GF~v~~~~~ 227 (662)
T PRK01747 211 VRRGLQEAGFTVRKVKG 227 (662)
T ss_pred HHHHHHHcCCeeeecCC
Confidence 88999999999886643
No 272
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=31.27 E-value=2.4e+02 Score=23.13 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=43.7
Q ss_pred CCeEEeccccccC-----------ChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCc
Q 043585 204 ADAYFFMLFFHAF-----------GGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFT 272 (287)
Q Consensus 204 ~D~~~l~~vlh~~-----------~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~ 272 (287)
+|.|++..--.-. ..+-...+++.+.+.|++ +|.|.|.=.--. .++.=++.++.+++||.
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~------py~~W~i~~lA~~~gl~ 146 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQ------PYDSWNIEELAAEAGLV 146 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC------CCccccHHHHHHhcCCE
Confidence 7777766544331 112235677889999999 899888522111 12233557888999999
Q ss_pred EEEEEecC
Q 043585 273 CCKITTMF 280 (287)
Q Consensus 273 ~~~~~~~~ 280 (287)
..+..+..
T Consensus 147 l~~~~~F~ 154 (166)
T PF10354_consen 147 LVRKVPFD 154 (166)
T ss_pred EEEEecCC
Confidence 99888763
No 273
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=30.53 E-value=27 Score=28.80 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCC-----CCCCHHHHHHHHHhCCCcEEEEEecC
Q 043585 222 LKILKKCREAIAGNGQRGKVLIMDIVINEKEDE-----DQRTDKEWKTLFLDAGFTCCKITTMF 280 (287)
Q Consensus 222 ~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~-----~~rt~~e~~~ll~~aGf~~~~~~~~~ 280 (287)
..+++-+++.|+| ||+|+| |.+-+..... .-.-..-+...|.++||+..+-+-.|
T Consensus 66 ~~l~~~~~~~l~p---g~~lfV-eY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWYfP 125 (170)
T PF06557_consen 66 DELYKLFSRYLEP---GGRLFV-EYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWYFP 125 (170)
T ss_dssp HHHHHHHHTT-------SEEEE-E-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE--
T ss_pred HHHHHHHHHHhhh---cCeEEE-EEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEeeeecc
Confidence 5899999999999 898887 5554422110 11123456778999999999888664
No 274
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=29.81 E-value=55 Score=29.92 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=46.8
Q ss_pred CCCceeeeccCcccC---C--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 187 TENLKYVADDMFQFI---P--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~~---p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
..||..+.+|+.+-+ | +.|-|++..+=.-.+|.+...++..+++.+.+ |.+++.-.
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifRt 366 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFRT 366 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEec
Confidence 678999999998832 3 48999999988777999999999999999999 77776543
No 275
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=29.80 E-value=56 Score=26.54 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=27.3
Q ss_pred CcceEEEecCcc-----------------cccchhhhhcCCCCCCceeeeccCccc-CCCCCeEEec
Q 043585 162 RLGSMVDVGGGN-----------------VLDLPHAVANTPQTENLKYVADDMFQF-IPPADAYFFM 210 (287)
Q Consensus 162 ~~~~vlDvGgG~-----------------v~Dlp~vi~~a~~~~Ri~~~~gd~~~~-~p~~D~~~l~ 210 (287)
..+++|=||||. +++ |++.+...+.+++++....+.+. +.++|+++..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEEC
Confidence 457899999998 332 33333322234566655555442 3457777663
No 276
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.54 E-value=3e+02 Score=21.77 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 043585 204 ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFG 281 (287)
Q Consensus 204 ~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 281 (287)
.|++++-+-= .|.+....|=.+...|.. +|.|.|+.+- .+.+..-+..++.+....||+..++......
T Consensus 46 vD~vllWwR~---~DgDL~D~LvDa~~~L~d---~G~IWvltPK---~gr~g~V~~~~I~eaA~taGL~~t~~~~v~~ 114 (127)
T PF11253_consen 46 VDVVLLWWRD---DDGDLVDALVDARTNLAD---DGVIWVLTPK---AGRPGHVEPSDIREAAPTAGLVQTKSCAVGD 114 (127)
T ss_pred ccEEEEEEEC---CcchHHHHHHHHHhhhcC---CCEEEEEccC---CCCCCCCCHHHHHHHHhhcCCeeeeeeccCC
Confidence 7877664432 233445566666677777 9999998543 3334566789999999999999998887744
No 277
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.33 E-value=2e+02 Score=26.22 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=44.2
Q ss_pred cccchhhhhcCCCCCCceeeeccCcccCCCCCeEEeccccc---cCCh------HHHHHHHHHHHHHhcCCCCCcEEEEE
Q 043585 174 VLDLPHAVANTPQTENLKYVADDMFQFIPPADAYFFMLFFH---AFGG------EDSLKILKKCREAIAGNGQRGKVLIM 244 (287)
Q Consensus 174 v~Dlp~vi~~a~~~~Ri~~~~gd~~~~~p~~D~~~l~~vlh---~~~d------~~~~~iL~~~~~al~~~~~~g~lli~ 244 (287)
.+||.+...... ..+++...+|+ +.+.++|++++.-=.- .-+. ..+.+|++.+.+.+...++.|.++++
T Consensus 41 a~DL~~~~~~~~-~~~~~i~~~~y-~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (307)
T cd05290 41 ALDFHHATALTY-STNTKIRAGDY-DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILI 118 (307)
T ss_pred HHHHHhhhccCC-CCCEEEEECCH-HHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 555555443221 12355556663 4566899988865442 2232 45788999999988876678888876
Q ss_pred ee
Q 043585 245 DI 246 (287)
Q Consensus 245 e~ 246 (287)
-.
T Consensus 119 sN 120 (307)
T cd05290 119 TN 120 (307)
T ss_pred cC
Confidence 43
No 278
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=27.27 E-value=1e+02 Score=27.50 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=37.2
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 213 FHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 213 lh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
-.||.......+.+++.+.+++ |+-|++++.. . ......++...|++.||+.+.+.
T Consensus 209 ~~Dw~~~~~~~i~~~v~~~~~~---G~IILmHd~~--~----T~~aL~~iI~~Lk~kGy~fvtl~ 264 (268)
T TIGR02873 209 TIDWKNPSPSVMVNRVLSKIHP---GAMVLMHPTA--S----STEGLEEMITIIKEKGYKIGTIT 264 (268)
T ss_pred CCCCCCCCHHHHHHHHHhcCCC---CcEEEEcCCc--c----HHHHHHHHHHHHHHCCCEEEeHH
Confidence 3466544556788888888888 6666666531 1 12236677777888999987754
No 279
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=26.77 E-value=36 Score=25.09 Aligned_cols=53 Identities=25% Similarity=0.414 Sum_probs=33.7
Q ss_pred CCCceeeeccCccc---CC--CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 043585 187 TENLKYVADDMFQF---IP--PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMD 245 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~---~p--~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e 245 (287)
.++++++.+|+.+- ++ .+|++++=- -|. .+....-|+.+.+.|+| ||.|++.|
T Consensus 48 ~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~--~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 48 SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHS--YEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp -BTEEEEES-THHHHHHHHH--EEEEEEES------HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred CCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCC--HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 67899999998763 22 477766532 333 35677788999999999 77666655
No 280
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=26.50 E-value=36 Score=31.15 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=43.8
Q ss_pred CceeeeccCccc-C---------CCCCeEEeccccccC---ChHHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 043585 189 NLKYVADDMFQF-I---------PPADAYFFMLFFHAF---GGEDSLKILKKCREAIAGNGQRGKVLIMDIV 247 (287)
Q Consensus 189 Ri~~~~gd~~~~-~---------p~~D~~~l~~vlh~~---~d~~~~~iL~~~~~al~~~~~~g~lli~e~~ 247 (287)
.++|...|+++. . |..|+|.+...++.. +-.+-.++|.++-+.++| |.-|+|+|.-
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDSp 244 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDSP 244 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcCC
Confidence 467889999883 2 136888888888763 556778999999999999 8888898853
No 281
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=26.37 E-value=56 Score=28.93 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=51.3
Q ss_pred chhhhhcCCC----CCCceeeeccCcccCCC--CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC
Q 043585 177 LPHAVANTPQ----TENLKYVADDMFQFIPP--ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINE 250 (287)
Q Consensus 177 lp~vi~~a~~----~~Ri~~~~gd~~~~~p~--~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~ 250 (287)
+..|.+...+ .+++.++.|.|-+.+|. .+-|-+-++=-||-+. ....|+.++.-|.| ||.|++-|...
T Consensus 142 ~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~---GGiIi~DDY~~-- 215 (248)
T PF05711_consen 142 LEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP---GGIIIFDDYGH-- 215 (248)
T ss_dssp HHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE---EEEEEESSTTT--
T ss_pred HHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC---CeEEEEeCCCC--
Confidence 4556665554 57999999999887773 3444444444467665 47889999999999 66665555443
Q ss_pred CCCCCCCCHHHHHHHHHhCCCcE
Q 043585 251 KEDEDQRTDKEWKTLFLDAGFTC 273 (287)
Q Consensus 251 ~~~~~~rt~~e~~~ll~~aGf~~ 273 (287)
. .+ .+-+.+.+++.|.+.
T Consensus 216 ~---gc--r~AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 216 P---GC--RKAVDEFRAEHGITD 233 (248)
T ss_dssp H---HH--HHHHHHHHHHTT--S
T ss_pred h---HH--HHHHHHHHHHcCCCC
Confidence 1 22 234555577787754
No 282
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=25.93 E-value=1.3e+02 Score=25.85 Aligned_cols=83 Identities=12% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCCceeeeccCccc---CC------CCC-eEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCC---
Q 043585 187 TENLKYVADDMFQF---IP------PAD-AYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKED--- 253 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~---~p------~~D-~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~--- 253 (287)
.+||+++.||-.++ .+ .++ +.++=..=|.+ +.+.+.|+.....+++ |+-++|-|..+..-+.
T Consensus 84 ~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~--~hvl~eL~~y~plv~~---G~Y~IVeDt~~~~~~~~~~ 158 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTH--EHVLAELEAYAPLVSP---GSYLIVEDTIIEDWPESWF 158 (206)
T ss_dssp -TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS------SSHHHHHHHHHHT--T---T-EEEETSHHHHHHHHS--
T ss_pred cCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccH--HHHHHHHHHhCccCCC---CCEEEEEeccccccccccc
Confidence 59999999998764 11 122 12222222333 3467888998899998 8888887776533211
Q ss_pred ---C---CCCCHHHHHHHHHhCC-CcEE
Q 043585 254 ---E---DQRTDKEWKTLFLDAG-FTCC 274 (287)
Q Consensus 254 ---~---~~rt~~e~~~ll~~aG-f~~~ 274 (287)
+ ..-......++|++.. |.+-
T Consensus 159 ~~~~w~~g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 159 PDRPWGPGNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp -----------HHHHHHHHHTTTTEEEE
T ss_pred cccchhhhhHHHHHHHHHHHHCCCcEec
Confidence 1 1223556777777663 5543
No 283
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=25.63 E-value=2.2e+02 Score=19.20 Aligned_cols=51 Identities=8% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q 043585 223 KILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFGLKS 284 (287)
Q Consensus 223 ~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~s 284 (287)
-.+++..+.|++ |..|.|+ .++ .-+..++..|++..|+++.++...++...
T Consensus 15 l~~~~~l~~l~~---G~~l~v~---~d~-----~~~~~di~~~~~~~g~~~~~~~~~~~~~~ 65 (70)
T PF01206_consen 15 LKAKKALKELPP---GEVLEVL---VDD-----PAAVEDIPRWCEENGYEVVEVEEEGGEYR 65 (70)
T ss_dssp HHHHHHHHTSGT---T-EEEEE---ESS-----TTHHHHHHHHHHHHTEEEEEEEESSSSEE
T ss_pred HHHHHHHHhcCC---CCEEEEE---ECC-----ccHHHHHHHHHHHCCCEEEEEEEeCCEEE
Confidence 344555566777 6566443 332 23578999999999999998887666443
No 284
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=25.60 E-value=2.5e+02 Score=24.89 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=47.5
Q ss_pred CcceEEEecCcc----------------cccchhhhhcCCC------------CCCceeeeccCccc------CCC-CCe
Q 043585 162 RLGSMVDVGGGN----------------VLDLPHAVANTPQ------------TENLKYVADDMFQF------IPP-ADA 206 (287)
Q Consensus 162 ~~~~vlDvGgG~----------------v~Dlp~vi~~a~~------------~~Ri~~~~gd~~~~------~p~-~D~ 206 (287)
....+|.+|+|. .-|+|.+++..+. ...+....-+.-.+ .|. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 456899999999 4566655444321 22444444333332 234 899
Q ss_pred EEeccccccC-ChHHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 043585 207 YFFMLFFHAF-GGEDSLKILKKCREAIAGNGQRGKVLIMDIV 247 (287)
Q Consensus 207 ~~l~~vlh~~-~d~~~~~iL~~~~~al~~~~~~g~lli~e~~ 247 (287)
++.+.++.+- .-+. +++-++.-|.. ++.+++.-..
T Consensus 166 ilasDvvy~~~~~e~---Lv~tla~ll~~---~~~i~l~~~l 201 (248)
T KOG2793|consen 166 ILASDVVYEEESFEG---LVKTLAFLLAK---DGTIFLAYPL 201 (248)
T ss_pred EEEeeeeecCCcchh---HHHHHHHHHhc---CCeEEEEEec
Confidence 9999988653 4444 44555566877 6755555433
No 285
>PRK13663 hypothetical protein; Provisional
Probab=25.40 E-value=68 Score=30.69 Aligned_cols=89 Identities=11% Similarity=0.211 Sum_probs=59.8
Q ss_pred CCCceeeeccCcccCCC--CCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC----CCC------
Q 043585 187 TENLKYVADDMFQFIPP--ADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK----EDE------ 254 (287)
Q Consensus 187 ~~Ri~~~~gd~~~~~p~--~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~----~~~------ 254 (287)
.+||.-..|-.+-++++ +|-+..++||=.|.++.-+++|++++ . ..-|+|+=..-+-. +..
T Consensus 19 ~eRi~~f~~KLYLEFGGKLfdD~HAsRVLPGF~pdsKi~mL~~lk----D---~~EIvi~I~A~DIe~nKiRgDlGItYd 91 (493)
T PRK13663 19 LERINQFDGKLYLEFGGKLFDDYHASRVLPGFEPDNKIKLLQELK----D---QVEIVIAINANDIERNKIRGDLGITYD 91 (493)
T ss_pred HHHHHhcCCEEEEEecccccccccHhhcCCCCCcCHHHHHHHHhh----c---cceEEEEEEhhhhhhccccccCCCchh
Confidence 34555444433334554 89999999999998888899998864 4 34444432222211 111
Q ss_pred --------------------------CCCCHHHHHHHHHhCCCcEEEEEecCCc
Q 043585 255 --------------------------DQRTDKEWKTLFLDAGFTCCKITTMFGL 282 (287)
Q Consensus 255 --------------------------~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 282 (287)
.......|+.-|+.-|.++..-++++|+
T Consensus 92 ~dVLRLiD~fr~~gl~V~sVVITqy~~qp~a~~F~~rLe~~GIkvy~Hy~i~GY 145 (493)
T PRK13663 92 QDVLRLIDDFRELGLYVGSVVITQYDGQPAADAFRNRLERLGIKVYRHYPIKGY 145 (493)
T ss_pred HHHHHHHHHHHhcCceeeeEEEEecCCChHHHHHHHHHHHCCCceEEecCcCCC
Confidence 4556788899999999999998888875
No 286
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.13 E-value=1.1e+02 Score=25.22 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=48.8
Q ss_pred cceEEEecCcc----------------cccc-hhhhhcCC-----C--CCCceeeeccCcc-cCCCCCeEEeccccccCC
Q 043585 163 LGSMVDVGGGN----------------VLDL-PHAVANTP-----Q--TENLKYVADDMFQ-FIPPADAYFFMLFFHAFG 217 (287)
Q Consensus 163 ~~~vlDvGgG~----------------v~Dl-p~vi~~a~-----~--~~Ri~~~~gd~~~-~~p~~D~~~l~~vlh~~~ 217 (287)
..+++|+|.|. ..+| |-.+.-.+ . ..+..|.--|.++ .+..|..+.+.-.=...
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes~m- 151 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAESVM- 151 (199)
T ss_pred CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHHHH-
Confidence 47999999998 2333 22222221 1 6778888889998 56556544433322122
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCC
Q 043585 218 GEDSLKILKKCREAIAGNGQRGKVLIMDIVINE 250 (287)
Q Consensus 218 d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~ 250 (287)
..+-.+++.-|+. +.+++-+-+-+|+
T Consensus 152 ----~dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 152 ----PDLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred ----hhhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 2233556666787 8999988877775
No 287
>PRK09213 pur operon repressor; Provisional
Probab=24.91 E-value=1.5e+02 Score=26.70 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=33.7
Q ss_pred HHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 230 EAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 230 ~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
+++++ |.+++|+|-++...+ |.....++++++|-+++.+.-
T Consensus 191 ~~l~~---G~rVLIVDDv~~TGg-----Ti~a~i~Ll~e~Ga~VvGv~v 231 (271)
T PRK09213 191 RSLKE---GSRVLIVDDFMKAGG-----TINGMISLLKEFDAEVVGIGV 231 (271)
T ss_pred hhcCC---cCEEEEEeeecccCH-----hHHHHHHHHHHCCCEEEEEEE
Confidence 66888 899999999998644 788999999999988766543
No 288
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.65 E-value=2.3e+02 Score=19.24 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q 043585 224 ILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITTMFGLK 283 (287)
Q Consensus 224 iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~ 283 (287)
.+++..+.|++ |..|.|. .++ .-+.+.+..|+++.|+++......+|..
T Consensus 15 ~~k~~l~~l~~---G~~l~V~---~dd-----~~s~~di~~~~~~~g~~~~~~~~~~~~~ 63 (69)
T cd03423 15 MLHKKVRKMKP---GDTLLVL---ATD-----PSTTRDIPKFCTFLGHELLAQETEDEPY 63 (69)
T ss_pred HHHHHHHcCCC---CCEEEEE---eCC-----CchHHHHHHHHHHcCCEEEEEEEcCCEE
Confidence 34555566676 6665553 333 2357899999999999998877755543
No 289
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=24.09 E-value=3.3e+02 Score=23.83 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=51.3
Q ss_pred ceeeeccCcc-cCC-CCCeEEeccccccCChHHHHHHHHHHHHHhcCCCCCcEEEEE-eeccCCCCCC---CCCCHHHHH
Q 043585 190 LKYVADDMFQ-FIP-PADAYFFMLFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIM-DIVINEKEDE---DQRTDKEWK 263 (287)
Q Consensus 190 i~~~~gd~~~-~~p-~~D~~~l~~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~-e~~~~~~~~~---~~rt~~e~~ 263 (287)
.++..-|... .+| .+|++++..-=.++++++..+| .+.|.. ||+++++ |+...+.... ..-....+.
T Consensus 182 y~V~~~~l~~~~IP~~~d~Lvi~~P~~~ls~~e~~~l----~~yl~~---GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~ 254 (271)
T PF09822_consen 182 YDVEELNLANEEIPDDADVLVIAGPKTDLSEEELYAL----DQYLMN---GGKLLILLDPFSVELQGLWAGGAQRDSNLN 254 (271)
T ss_pred CceeecCCcccccCCCCCEEEEECCCCCCCHHHHHHH----HHHHHc---CCeEEEEECCcccccccccccccccccCHH
Confidence 5666666644 577 4999999999999999875443 456777 8888874 4442221111 111255788
Q ss_pred HHHHhCCCcEE
Q 043585 264 TLFLDAGFTCC 274 (287)
Q Consensus 264 ~ll~~aGf~~~ 274 (287)
.+|+.-|+++.
T Consensus 255 ~lL~~~Gi~~~ 265 (271)
T PF09822_consen 255 DLLEEYGIRIN 265 (271)
T ss_pred HHHHHcCCEeC
Confidence 89999998764
No 290
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=24.08 E-value=1e+02 Score=29.89 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=30.6
Q ss_pred CCCeEEeccccccCChH-HHHHHHH-HHHHHhcCCCCCcEEEEEeeccC
Q 043585 203 PADAYFFMLFFHAFGGE-DSLKILK-KCREAIAGNGQRGKVLIMDIVIN 249 (287)
Q Consensus 203 ~~D~~~l~~vlh~~~d~-~~~~iL~-~~~~al~~~~~~g~lli~e~~~~ 249 (287)
+||+++++++||..... ....+.+ -.+++.++ |+.++|+|.-..
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~~ 319 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGTT 319 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCCc
Confidence 39999999999987443 3333333 34567777 899999986443
No 291
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=23.81 E-value=1.6e+02 Score=25.82 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=53.1
Q ss_pred ccCcceEEEecCcc------cc----------c-chhhhhcCCC-----CCCceeeec---cCcccCC--CCCeEEeccc
Q 043585 160 IERLGSMVDVGGGN------VL----------D-LPHAVANTPQ-----TENLKYVAD---DMFQFIP--PADAYFFMLF 212 (287)
Q Consensus 160 ~~~~~~vlDvGgG~------v~----------D-lp~vi~~a~~-----~~Ri~~~~g---d~~~~~p--~~D~~~l~~v 212 (287)
.+++.+||.||=|- ++ . .|.|.+..+. .++|....| |....+| .+|-|+.--.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 57889999999998 22 2 2556555543 567777776 4444345 2666554322
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 043585 213 FHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIV 247 (287)
Q Consensus 213 lh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~ 247 (287)
- . .-|+....-+.+.+.|+| +|.+--+...
T Consensus 179 ~-e-~yEdl~~~hqh~~rLLkP---~gv~SyfNg~ 208 (271)
T KOG1709|consen 179 S-E-LYEDLRHFHQHVVRLLKP---EGVFSYFNGL 208 (271)
T ss_pred h-h-HHHHHHHHHHHHhhhcCC---CceEEEecCc
Confidence 1 1 125567788899999999 8877665544
No 292
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.47 E-value=1.6e+02 Score=24.72 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=22.2
Q ss_pred HhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEE
Q 043585 231 AIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCK 275 (287)
Q Consensus 231 al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 275 (287)
.+++ |-+++|+|-++...+ |..+..++++++|.+++.
T Consensus 113 ~i~~---G~rVlIVDDviaTGg-----T~~a~~~lv~~aGa~vvg 149 (189)
T PRK09219 113 FLSE---GDRVLIIDDFLANGQ-----AALGLIDIIEQAGAKVAG 149 (189)
T ss_pred hCCC---CCEEEEEeehhhcCh-----HHHHHHHHHHHCCCEEEE
Confidence 4566 778888888876543 444555555555554443
No 293
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=23.16 E-value=95 Score=20.05 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCcEEEE
Q 043585 260 KEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 260 ~e~~~ll~~aGf~~~~~ 276 (287)
.|+.++|+.+||...+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 68999999999998854
No 294
>PRK09019 translation initiation factor Sui1; Validated
Probab=23.01 E-value=3.3e+02 Score=20.85 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=36.6
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEE
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCC 274 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 274 (287)
..++.+..++++.+.+.+.- ||.+- |..+.=++ =-.+...++|.+.||++.
T Consensus 54 ~~~~~dlk~l~K~lKkk~gc---GGtvk--~~~IelQG----D~r~~v~~~L~~~Gf~~k 104 (108)
T PRK09019 54 DLDDAELKKLAAELKKKCGC---GGAVK--DGVIEIQG----DKRDLLKSLLEAKGMKVK 104 (108)
T ss_pred cCCHHHHHHHHHHHHHHhcC---CCeEE--cCEEEEcC----cHHHHHHHHHHHCCCeEE
Confidence 34677889999999999998 88775 32221111 125678999999999876
No 295
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=22.80 E-value=1.9e+02 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=26.9
Q ss_pred HhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 043585 231 AIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKIT 277 (287)
Q Consensus 231 al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 277 (287)
++++ |.|++|+|-++...+ |..+..++++++|-+++.+.
T Consensus 113 ~l~~---G~rVLIVDDvvtTGg-----T~~a~~~ll~~aGa~Vvgv~ 151 (191)
T TIGR01744 113 FLSD---QDRVLIIDDFLANGQ-----AAHGLVDIAKQAGAKIAGIG 151 (191)
T ss_pred hCCC---cCEEEEEEehhccCh-----HHHHHHHHHHHCCCEEEEEE
Confidence 4567 889999999887643 56666666666666654443
No 296
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=22.76 E-value=53 Score=25.94 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=40.9
Q ss_pred ccCcceEEEecCcc---------------------cccc-hhhhhcCCC---------CCCceeeeccCccc-CC-CCCe
Q 043585 160 IERLGSMVDVGGGN---------------------VLDL-PHAVANTPQ---------TENLKYVADDMFQF-IP-PADA 206 (287)
Q Consensus 160 ~~~~~~vlDvGgG~---------------------v~Dl-p~vi~~a~~---------~~Ri~~~~gd~~~~-~p-~~D~ 206 (287)
..+..+|||+|+|. .+|. ++.++.+.+ ..++++..+++... .. ..++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 36678999999999 1222 222222221 36677777776652 22 4677
Q ss_pred EEeccccccCChHHHHHHHHHHHH
Q 043585 207 YFFMLFFHAFGGEDSLKILKKCRE 230 (287)
Q Consensus 207 ~~l~~vlh~~~d~~~~~iL~~~~~ 230 (287)
++--|.--+.++. +|+...+
T Consensus 103 ~vgLHaCG~Ls~~----~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSDR----ALRLFIR 122 (141)
T ss_pred EEEeecccchHHH----HHHHHHH
Confidence 7777777788874 5554444
No 297
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.74 E-value=1.5e+02 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 230 EAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 230 ~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
+++++ |.+++|+|-++...+ |.....++++++|-+++.+.-
T Consensus 189 ~~l~~---G~rVLIVDDv~~TGg-----Ti~a~i~Ll~e~Ga~VvGv~v 229 (268)
T TIGR01743 189 RSLKT---GSKVLIIDDFMKAGG-----TINGMINLLDEFDAEVAGIGV 229 (268)
T ss_pred hhCCC---cCEEEEEeeecccCH-----HHHHHHHHHHHCCCEEEEEEE
Confidence 57888 889999999988644 788999999999988766543
No 298
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=22.53 E-value=37 Score=22.82 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=9.0
Q ss_pred HHHHHhCCCcE
Q 043585 263 KTLFLDAGFTC 273 (287)
Q Consensus 263 ~~ll~~aGf~~ 273 (287)
-+||++|||.+
T Consensus 30 G~WL~~aGF~~ 40 (57)
T PF08845_consen 30 GKWLEEAGFTI 40 (57)
T ss_pred hhhhHHhCCCC
Confidence 46899999965
No 299
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=21.92 E-value=48 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=14.0
Q ss_pred ccccCcceEEEecCcc
Q 043585 158 TLIERLGSMVDVGGGN 173 (287)
Q Consensus 158 ~~~~~~~~vlDvGgG~ 173 (287)
|.+-+.+.++|+||=+
T Consensus 31 WVFIn~kLv~DlGG~H 46 (90)
T TIGR02148 31 WVFINNKLVVDIGGQH 46 (90)
T ss_pred EEEECCEEEEEccCcC
Confidence 6788899999999966
No 300
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=21.41 E-value=1.8e+02 Score=25.52 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHhcCCCCCcEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 043585 230 EAIAGNGQRGKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKITT 278 (287)
Q Consensus 230 ~al~~~~~~g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 278 (287)
.++++ |.+++|+|-++...+ |.....++++++|-+++.+.-
T Consensus 171 ~~l~~---G~rVLIVDDvi~TG~-----Tl~~~~~ll~~~ga~vvgv~v 211 (238)
T PRK08558 171 SALKK---GDRVLIVDDIIRSGE-----TQRALLDLARQAGADVVGVFF 211 (238)
T ss_pred HHcCC---cCEEEEEecccccCH-----HHHHHHHHHHHcCCEEEEEEE
Confidence 45777 899999999988643 566777777777776655443
No 301
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=20.94 E-value=2.1e+02 Score=24.62 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCC-cEEEEEeeccCCCCCCCCCCHHHHHHHHHhCCCcEEEE
Q 043585 216 FGGEDSLKILKKCREAIAGNGQR-GKVLIMDIVINEKEDEDQRTDKEWKTLFLDAGFTCCKI 276 (287)
Q Consensus 216 ~~d~~~~~iL~~~~~al~~~~~~-g~lli~e~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 276 (287)
.=++....+.+++.+.++. + ..++++-. . ...-..-+.++|++.||++..|
T Consensus 208 ll~~RN~~~~~~i~~~l~~---~~~~fvvVGa-~------HL~G~~gvl~lLr~~Gy~V~~v 259 (259)
T PF01963_consen 208 LLDERNRRWAEKIEELLKE---GGTVFVVVGA-G------HLPGEDGVLDLLRKKGYTVEPV 259 (259)
T ss_pred HHHHHhHHHHHHHHHHHhc---CCCEEEEEcc-h------hccchhhHHHHHHhCCceeecC
Confidence 3345667889999999998 5 44444432 1 2223556889999999998754
No 302
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=20.72 E-value=41 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.1
Q ss_pred cCcceEEEecCcccccchhhhhcCC
Q 043585 161 ERLGSMVDVGGGNVLDLPHAVANTP 185 (287)
Q Consensus 161 ~~~~~vlDvGgG~v~Dlp~vi~~a~ 185 (287)
......||||||-.+|..+|-.+|+
T Consensus 55 ~~~~gkV~lGGGl~m~~~evd~IA~ 79 (126)
T PF12757_consen 55 DENAGKVNLGGGLFMDQEEVDAIAR 79 (126)
T ss_pred ccCCCeeeCCCCcccCHHHHHHHHH
Confidence 4456899999999887777666554
No 303
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.56 E-value=1.3e+02 Score=27.54 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=28.6
Q ss_pred cccccCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCC
Q 043585 211 LFFHAFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEK 251 (287)
Q Consensus 211 ~vlh~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~ 251 (287)
+|.-+-.-++..+.|..+.+.|+| ||+|+|+.+..-|+
T Consensus 209 RI~VN~EL~~L~~~L~~~~~~L~~---gGrl~VISfHSLED 246 (305)
T TIGR00006 209 RIYVNDELEELEEALQFAPNLLAP---GGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcC---CCEEEEEecCcHHH
Confidence 333344445678899999999999 99999998766543
No 304
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.29 E-value=99 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=25.2
Q ss_pred CchHHHHHHHHHHhcccchhhH-hhhcccccccCcceEEEecCcc
Q 043585 130 NPRLSQRFNQAMVNDSEMATFI-VKDCCRTLIERLGSMVDVGGGN 173 (287)
Q Consensus 130 ~~~~~~~f~~aM~~~s~~~~~~-~~~~~~~~~~~~~~vlDvGgG~ 173 (287)
|+. .+.|.+++.......... +... ...+..++||||+.
T Consensus 9 n~~-~~~~~~~~~~~d~~~i~~~A~~~----~~~GAdiIDVg~~~ 48 (261)
T PRK07535 9 NGT-RKSIAEAIEAKDAAFIQKLALKQ----AEAGADYLDVNAGT 48 (261)
T ss_pred chh-hHHHHHHHHcCCHHHHHHHHHHH----HHCCCCEEEECCCC
Confidence 455 567777877765332222 3323 46679999999998
No 305
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.02 E-value=1.4e+02 Score=27.29 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=27.9
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCcEEEEEeeccCCCC
Q 043585 215 AFGGEDSLKILKKCREAIAGNGQRGKVLIMDIVINEKE 252 (287)
Q Consensus 215 ~~~d~~~~~iL~~~~~al~~~~~~g~lli~e~~~~~~~ 252 (287)
+=.-++....|..+.+.|+| ||||+|+.+..-|++
T Consensus 217 NdEL~~L~~~L~~a~~~L~~---gGRl~VIsFHSLEDR 251 (314)
T COG0275 217 NDELEELEEALEAALDLLKP---GGRLAVISFHSLEDR 251 (314)
T ss_pred hhHHHHHHHHHHHHHHhhCC---CcEEEEEEecchHHH
Confidence 33446678899999999999 999999988765543
Done!