Query 043587
Match_columns 285
No_of_seqs 180 out of 2434
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 6.4E-28 1.4E-32 227.8 10.2 270 1-283 398-730 (889)
2 PLN03210 Resistant to P. syrin 99.9 1E-21 2.2E-26 193.8 12.2 264 2-282 424-716 (1153)
3 PLN00113 leucine-rich repeat r 99.7 9.3E-18 2E-22 164.5 10.9 129 148-281 139-271 (968)
4 PLN00113 leucine-rich repeat r 99.7 6.7E-18 1.4E-22 165.5 8.8 150 97-257 141-292 (968)
5 KOG0617 Ras suppressor protein 99.6 3.2E-18 6.9E-23 128.5 -4.4 160 95-269 32-195 (264)
6 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.4E-22 125.6 -5.2 155 113-281 27-184 (264)
7 KOG0444 Cytoskeletal regulator 99.6 9.4E-17 2E-21 142.1 -0.8 258 2-283 106-375 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 7.6E-17 1.7E-21 142.6 -3.4 172 97-280 56-255 (1255)
9 KOG4194 Membrane glycoprotein 99.6 1.1E-16 2.3E-21 140.5 -3.0 175 93-279 266-448 (873)
10 KOG4194 Membrane glycoprotein 99.6 2.1E-15 4.5E-20 132.5 4.1 180 96-281 173-376 (873)
11 PLN03210 Resistant to P. syrin 99.5 1.3E-13 2.9E-18 136.6 11.9 127 95-236 588-715 (1153)
12 KOG0472 Leucine-rich repeat pr 99.3 2.1E-14 4.6E-19 121.1 -4.8 159 105-280 146-307 (565)
13 KOG0472 Leucine-rich repeat pr 99.3 9.4E-14 2E-18 117.3 -5.0 172 94-280 66-262 (565)
14 KOG0618 Serine/threonine phosp 99.2 5.4E-13 1.2E-17 123.0 -2.4 116 163-281 368-487 (1081)
15 KOG0532 Leucine-rich repeat (L 99.2 2.4E-13 5.1E-18 119.4 -4.5 169 95-280 74-244 (722)
16 cd00116 LRR_RI Leucine-rich re 99.2 2.2E-11 4.7E-16 104.7 3.7 177 94-281 49-261 (319)
17 PRK15370 E3 ubiquitin-protein 99.1 2.6E-10 5.6E-15 107.4 11.0 160 94-280 197-377 (754)
18 cd00116 LRR_RI Leucine-rich re 99.1 2.2E-11 4.8E-16 104.7 3.0 65 174-238 161-234 (319)
19 KOG4658 Apoptotic ATPase [Sign 99.1 4.6E-11 1E-15 114.1 4.5 150 116-279 520-677 (889)
20 KOG4237 Extracellular matrix p 99.1 3.5E-11 7.6E-16 101.7 2.7 176 93-280 64-332 (498)
21 KOG0618 Serine/threonine phosp 99.1 1.6E-11 3.6E-16 113.4 0.7 150 94-258 308-485 (1081)
22 PF14580 LRR_9: Leucine-rich r 99.1 7.8E-11 1.7E-15 91.4 3.8 127 115-258 15-149 (175)
23 PRK15370 E3 ubiquitin-protein 99.1 2.6E-10 5.5E-15 107.5 6.8 159 95-280 219-398 (754)
24 COG4886 Leucine-rich repeat (L 99.0 2.9E-10 6.3E-15 100.8 5.3 170 96-280 116-287 (394)
25 PLN03150 hypothetical protein; 99.0 5E-10 1.1E-14 104.5 6.8 103 151-258 420-524 (623)
26 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.7E-15 88.5 3.6 124 95-233 18-148 (175)
27 PRK15387 E3 ubiquitin-protein 99.0 3.5E-09 7.6E-14 99.6 10.8 32 250-281 423-456 (788)
28 PLN03150 hypothetical protein; 98.9 2.7E-09 5.9E-14 99.6 7.5 112 120-242 419-532 (623)
29 KOG0532 Leucine-rich repeat (L 98.9 3.8E-11 8.2E-16 105.8 -4.7 145 97-258 99-243 (722)
30 KOG1259 Nischarin, modulator o 98.9 1.7E-10 3.8E-15 94.5 -1.3 129 114-258 279-408 (490)
31 PRK15387 E3 ubiquitin-protein 98.8 2.5E-08 5.5E-13 93.9 11.2 119 94-238 220-355 (788)
32 COG4886 Leucine-rich repeat (L 98.8 2.2E-09 4.8E-14 95.2 3.6 166 101-281 98-266 (394)
33 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.4E-14 89.9 0.8 128 95-238 283-412 (490)
34 KOG3207 Beta-tubulin folding c 98.8 2.4E-09 5.2E-14 91.8 2.1 101 176-277 220-333 (505)
35 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3E-13 64.9 3.4 57 179-236 2-60 (61)
36 KOG3207 Beta-tubulin folding c 98.7 9.6E-09 2.1E-13 88.2 3.4 87 145-237 218-313 (505)
37 PF13855 LRR_8: Leucine rich r 98.6 7.5E-08 1.6E-12 61.5 3.9 58 149-212 1-60 (61)
38 KOG4237 Extracellular matrix p 98.4 1.5E-08 3.2E-13 86.1 -2.7 141 103-257 53-196 (498)
39 PF12799 LRR_4: Leucine Rich r 98.3 7.6E-07 1.6E-11 52.5 3.6 34 179-212 2-35 (44)
40 KOG2120 SCF ubiquitin ligase, 98.3 1.4E-08 3.1E-13 83.3 -5.2 171 97-280 186-373 (419)
41 KOG1909 Ran GTPase-activating 98.3 1.8E-07 3.9E-12 78.3 0.9 176 95-282 91-310 (382)
42 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 83.2 -0.7 85 145-238 91-175 (414)
43 PF12799 LRR_4: Leucine Rich r 98.2 2.5E-06 5.5E-11 50.2 3.5 41 149-195 1-41 (44)
44 KOG3665 ZYG-1-like serine/thre 98.1 1.8E-06 4E-11 81.0 4.1 129 119-258 122-259 (699)
45 KOG0531 Protein phosphatase 1, 98.1 6.3E-07 1.4E-11 80.0 0.9 104 94-212 93-197 (414)
46 KOG3665 ZYG-1-like serine/thre 98.1 1.9E-06 4.1E-11 80.9 3.5 134 95-240 121-265 (699)
47 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.8E-12 86.3 -4.3 101 148-258 186-288 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.1 4.7E-07 1E-11 74.6 -1.0 154 94-258 208-372 (419)
49 KOG1909 Ran GTPase-activating 98.1 3.8E-06 8.3E-11 70.6 3.8 138 93-237 154-310 (382)
50 PRK15386 type III secretion pr 97.9 3.7E-05 8E-10 67.3 7.1 118 114-257 47-185 (426)
51 KOG4579 Leucine-rich repeat (L 97.9 2.5E-06 5.4E-11 62.5 -0.2 56 179-235 78-133 (177)
52 PRK15386 type III secretion pr 97.9 2.2E-05 4.9E-10 68.6 5.4 116 95-235 51-187 (426)
53 KOG1859 Leucine-rich repeat pr 97.9 6.1E-07 1.3E-11 82.0 -4.4 129 94-238 162-292 (1096)
54 KOG4579 Leucine-rich repeat (L 97.8 5.9E-06 1.3E-10 60.6 0.8 111 97-220 28-141 (177)
55 KOG2982 Uncharacterized conser 97.6 1.3E-05 2.8E-10 66.3 -0.1 156 117-281 69-260 (418)
56 KOG2739 Leucine-rich acidic nu 97.4 6.9E-05 1.5E-09 60.8 2.0 84 174-258 61-152 (260)
57 KOG1644 U2-associated snRNP A' 97.4 0.00016 3.4E-09 56.6 3.7 63 174-237 60-125 (233)
58 KOG1644 U2-associated snRNP A' 97.3 0.00025 5.5E-09 55.5 4.1 100 119-233 42-148 (233)
59 KOG2123 Uncharacterized conser 97.3 1.4E-05 3E-10 65.5 -3.3 63 176-240 39-103 (388)
60 KOG2123 Uncharacterized conser 97.0 0.00011 2.5E-09 60.3 -0.9 102 116-232 16-124 (388)
61 PF00560 LRR_1: Leucine Rich R 96.8 0.0006 1.3E-08 33.5 1.1 18 180-197 2-19 (22)
62 KOG2982 Uncharacterized conser 96.7 0.0014 3.1E-08 54.5 3.3 36 95-130 70-108 (418)
63 COG5238 RNA1 Ran GTPase-activa 96.6 0.0017 3.7E-08 53.4 2.9 136 112-258 85-251 (388)
64 KOG2739 Leucine-rich acidic nu 96.3 0.0022 4.8E-08 52.2 1.9 110 170-282 35-155 (260)
65 PF13306 LRR_5: Leucine rich r 96.1 0.0094 2E-07 43.7 4.4 104 114-234 7-112 (129)
66 KOG0473 Leucine-rich repeat pr 96.0 0.00017 3.7E-09 57.8 -5.8 91 144-241 37-127 (326)
67 KOG4341 F-box protein containi 95.9 0.0011 2.4E-08 57.4 -1.8 183 94-285 162-387 (483)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0035 7.5E-08 30.7 0.7 19 203-222 2-20 (22)
69 PF13504 LRR_7: Leucine rich r 95.4 0.0095 2.1E-07 27.1 1.3 14 180-193 3-16 (17)
70 PF13306 LRR_5: Leucine rich r 95.4 0.023 5E-07 41.6 4.0 105 142-258 5-112 (129)
71 KOG1947 Leucine rich repeat pr 95.1 0.01 2.2E-07 53.8 1.5 61 177-237 242-307 (482)
72 KOG4341 F-box protein containi 94.7 0.014 3E-07 50.9 1.2 134 116-258 291-435 (483)
73 COG5238 RNA1 Ran GTPase-activa 94.5 0.051 1.1E-06 45.0 4.0 157 94-258 90-281 (388)
74 smart00370 LRR Leucine-rich re 93.7 0.058 1.3E-06 27.4 1.9 19 178-196 2-20 (26)
75 smart00369 LRR_TYP Leucine-ric 93.7 0.058 1.3E-06 27.4 1.9 19 178-196 2-20 (26)
76 KOG1947 Leucine rich repeat pr 92.4 0.026 5.6E-07 51.2 -1.0 138 139-281 178-332 (482)
77 KOG3864 Uncharacterized conser 91.9 0.021 4.6E-07 45.0 -1.8 80 179-258 102-185 (221)
78 KOG0473 Leucine-rich repeat pr 91.5 0.0087 1.9E-07 48.3 -4.5 85 172-258 36-120 (326)
79 smart00367 LRR_CC Leucine-rich 88.3 0.23 4.9E-06 25.2 0.8 17 269-285 1-17 (26)
80 KOG3864 Uncharacterized conser 87.1 0.43 9.3E-06 37.8 2.0 81 119-210 101-185 (221)
81 smart00364 LRR_BAC Leucine-ric 85.2 0.52 1.1E-05 24.0 1.1 17 179-195 3-19 (26)
82 KOG4308 LRR-containing protein 78.6 0.029 6.3E-07 50.9 -8.6 34 225-258 262-299 (478)
83 smart00365 LRR_SD22 Leucine-ri 77.3 1.9 4.2E-05 21.9 1.5 15 179-193 3-17 (26)
84 PF13516 LRR_6: Leucine Rich r 75.7 1.7 3.6E-05 21.3 1.0 14 178-191 2-15 (24)
85 smart00368 LRR_RI Leucine rich 63.8 5.5 0.00012 20.5 1.5 13 179-191 3-15 (28)
86 KOG4308 LRR-containing protein 55.8 0.64 1.4E-05 42.4 -4.9 177 98-281 89-301 (478)
87 KOG3763 mRNA export factor TAP 52.9 9 0.0002 35.2 1.8 63 177-239 217-284 (585)
88 PF14162 YozD: YozD-like prote 50.1 20 0.00042 21.5 2.3 22 27-48 9-30 (57)
89 PF08564 CDC37_C: Cdc37 C term 49.4 2.7 5.8E-05 29.3 -1.5 44 8-51 21-71 (99)
90 cd04448 DEP_PIKfyve DEP (Dishe 24.5 73 0.0016 21.2 2.3 38 14-51 24-69 (81)
91 PF13463 HTH_27: Winged helix 23.2 1.2E+02 0.0027 18.6 3.2 31 32-62 35-65 (68)
92 cd04441 DEP_2_DEP6 DEP (Dishev 21.2 86 0.0019 21.2 2.1 37 15-51 29-73 (85)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=6.4e-28 Score=227.76 Aligned_cols=270 Identities=29% Similarity=0.393 Sum_probs=205.7
Q ss_pred CCceeccccCCchhhhccc--------------------------ccc-CCCCCHHHHHHHHHHHHhhCCCCccccccCC
Q 043587 1 MSSLLLSYNDLPSKLKRCY--------------------------LSA-EEDEEMETIGEEYFGILAPRSFFQEFEKSYD 53 (285)
Q Consensus 1 ~~~L~lSy~~L~~~lk~cf--------------------------~~~-~~~~~~~~~~~~~~~~Li~~~li~~~~~~~~ 53 (285)
++||++||+.||.++|.|| +.+ .+++++++.|.+|+.+|+++++++..+..
T Consensus 398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~-- 475 (889)
T KOG4658|consen 398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE-- 475 (889)
T ss_pred HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--
Confidence 4799999999999999999 333 23678899999999999999999987765
Q ss_pred CceeeEecChHHHHHHHHhhc-----cceeEeeeC-CcccccccCCCCCceeEEEEEecCCcccccchhccccccEEeec
Q 043587 54 NRIIKCKMHDMVHDFAQFVSE-----NECLSLEIN-GSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLID 127 (285)
Q Consensus 54 ~~~~~~~~hd~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 127 (285)
++..+|+|||+++++|.+++. .+......+ +.....-. ..+..+|++++..+.....+... ..++|++|.+.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~-~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~ 553 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQV-KSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQ 553 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccc-cchhheeEEEEeccchhhccCCC-CCCccceEEEe
Confidence 667799999999999999998 555444433 22211111 45678999999999887655543 44589999999
Q ss_pred CCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEe
Q 043587 128 GGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLD 207 (285)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 207 (285)
.+.. ....+....|..++.|++|||+ +|.-.+.+|..|+.+.+||||+++++.++.+|.++++|..|.+|+
T Consensus 554 ~n~~----~l~~is~~ff~~m~~LrVLDLs-----~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 554 RNSD----WLLEISGEFFRSLPLLRVLDLS-----GNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ecch----hhhhcCHHHHhhCcceEEEECC-----CCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 9852 1455567778999999999999 888678899999999999999999999999999999999999999
Q ss_pred cCCCCCcCcCcccccccCCCceeecCCCCCCc--ccCCCCCCCCcCCcccccc---------------------------
Q 043587 208 ISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR--YMPVGIGRLTGLRTLGEFT--------------------------- 258 (285)
Q Consensus 208 l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~--------------------------- 258 (285)
+..+......|..+..|.+|++|.+....... ..-..+..+.+|+.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 99988677776666679999999997653111 1112234444444443332
Q ss_pred -ccCCccccccCCcCCCceecccCCC
Q 043587 259 -KACRLESLKNLEHLQICGIRRLGYV 283 (285)
Q Consensus 259 -~~~~~~~l~~l~~L~~L~i~~~~~~ 283 (285)
....+..+..+.+|+.|.|.+|...
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCc
Confidence 1234455677778888888877653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1e-21 Score=193.78 Aligned_cols=264 Identities=21% Similarity=0.242 Sum_probs=155.5
Q ss_pred CceeccccCCch-hhhccccc--cC-CCCCHHHH----H------HHHHHHHhhCCCCccccccCCCceeeEecChHHHH
Q 043587 2 SSLLLSYNDLPS-KLKRCYLS--AE-EDEEMETI----G------EEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHD 67 (285)
Q Consensus 2 ~~L~lSy~~L~~-~lk~cf~~--~~-~~~~~~~~----~------~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~~ 67 (285)
++|++||++|++ ..|.||.. +. .+.....+ + +.-++.|+++++++... + .+.|||++++
T Consensus 424 ~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~----~---~~~MHdLl~~ 496 (1153)
T PLN03210 424 KTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE----D---IVEMHSLLQE 496 (1153)
T ss_pred HHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC----C---eEEhhhHHHH
Confidence 589999999987 59999922 11 12222111 1 12277899999998643 1 5799999999
Q ss_pred HHHHhhccce-------eEeeeCCcccccccCCCCCceeEEEEEecCCcc---cccchhccccccEEeecCCCCCC-CCc
Q 043587 68 FAQFVSENEC-------LSLEINGSEELDVTNSLDEKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGRSDH-SSL 136 (285)
Q Consensus 68 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-~~l 136 (285)
+|+.+++++. +.+.................++.+++....... ...+|.++++|+.|.+..+..+. ...
T Consensus 497 ~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~ 576 (1153)
T PLN03210 497 MGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEV 576 (1153)
T ss_pred HHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccc
Confidence 9999987653 222221111111111344567777766554433 34567888889888886543110 001
Q ss_pred hhhHHHHHHhcC-CccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcC
Q 043587 137 NGEILEELFREL-TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLE 215 (285)
Q Consensus 137 ~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 215 (285)
... .|..|..+ .+|+.|++. ++. ...+|..+ .+.+|+.|+++++.+..+|.++..+++|+.|++++|..++
T Consensus 577 ~~~-lp~~~~~lp~~Lr~L~~~-----~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 577 RWH-LPEGFDYLPPKLRLLRWD-----KYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred eee-cCcchhhcCcccEEEEec-----CCC-CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 111 12334444 347777776 655 55566555 3566666777666666666666666666666666665555
Q ss_pred cCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccCC
Q 043587 216 ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLGY 282 (285)
Q Consensus 216 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~~ 282 (285)
.+| .++.+++|++|++++|.....+|..++++++|+.|++.+ ....+... ++++|+.|++++|..
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 665 366666666666666666666666666666666666665 12222222 455666666666543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.74 E-value=9.3e-18 Score=164.49 Aligned_cols=129 Identities=26% Similarity=0.371 Sum_probs=100.6
Q ss_pred CCccceeeecccccccccCCCcccccccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587 148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVN 226 (285)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 226 (285)
+++|++|+++ +|.+.+.+|..++.+.+|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++
T Consensus 139 l~~L~~L~Ls-----~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 139 IPNLETLDLS-----NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred cCCCCEEECc-----CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 4455555555 66655667777888888888888888854 67778888888888888888866778888888888
Q ss_pred CceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 227 MKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 227 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
|++|++++|.+.+.+|..++.+++|++|++++ ....+..++++++|+.|+++++.
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 88888888888878888888888888888877 45677778888888888887653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=6.7e-18 Score=165.52 Aligned_cols=150 Identities=22% Similarity=0.321 Sum_probs=64.6
Q ss_pred ceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587 97 KVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE 175 (285)
Q Consensus 97 ~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~ 175 (285)
+++.|.+..+.... .+..+..+++|++|++.+|. +.+. .|..+.++++|++|+++ +|.+.+.+|..++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-----l~~~-~p~~~~~l~~L~~L~L~-----~n~l~~~~p~~l~ 209 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-----LVGK-IPNSLTNLTSLEFLTLA-----SNQLVGQIPRELG 209 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCc-----cccc-CChhhhhCcCCCeeecc-----CCCCcCcCChHHc
Confidence 34444444443332 33444455555555555544 1222 23334445555555554 4443344444444
Q ss_pred ccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 176 KLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 176 ~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
++.+|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 4444444444444433 334444444444444444444333344444444444444444444433344444444444444
Q ss_pred ccc
Q 043587 255 GEF 257 (285)
Q Consensus 255 ~l~ 257 (285)
+++
T Consensus 290 ~Ls 292 (968)
T PLN00113 290 DLS 292 (968)
T ss_pred ECc
Confidence 443
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.2e-18 Score=128.50 Aligned_cols=160 Identities=24% Similarity=0.334 Sum_probs=116.9
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..++.++.++.+.+..+++.++++.+|+.|++.+|+ ..+. |..++.++.|+.|+++ -|. ...+|..|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq------ie~l-p~~issl~klr~lnvg-----mnr-l~~lprgf 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ------IEEL-PTSISSLPKLRILNVG-----MNR-LNILPRGF 98 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch------hhhc-Chhhhhchhhhheecc-----hhh-hhcCcccc
Confidence 456777777777777777888888888888888887 5554 4447778888888887 666 66677788
Q ss_pred cccCCCceEeccccccc--ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 175 EKLVHLRYLSLSFQHIE--KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
+.++-|+.||+.+|.+. .+|..+..++.|+.|.++.|. .+.+|..++++++|+.|.+.+|.+. .+|..++.+..|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 88888888888877755 567777777777777777776 6777777888888888887777666 6777778787787
Q ss_pred cccccc--ccCCccccccC
Q 043587 253 TLGEFT--KACRLESLKNL 269 (285)
Q Consensus 253 ~L~l~~--~~~~~~~l~~l 269 (285)
+|.+.+ -...+.+++.+
T Consensus 177 elhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHhcccceeeecChhhhhh
Confidence 777776 23344444433
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-17 Score=125.59 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=136.9
Q ss_pred cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc
Q 043587 113 VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK 192 (285)
Q Consensus 113 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~ 192 (285)
..+.++++++.|.+++|. ...++|. +..+.+|++|++. .|+ ++++|.+++.++.|+.|+++-|++..
T Consensus 27 ~gLf~~s~ITrLtLSHNK------l~~vppn-ia~l~nlevln~~-----nnq-ie~lp~~issl~klr~lnvgmnrl~~ 93 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK------LTVVPPN-IAELKNLEVLNLS-----NNQ-IEELPTSISSLPKLRILNVGMNRLNI 93 (264)
T ss_pred ccccchhhhhhhhcccCc------eeecCCc-HHHhhhhhhhhcc-----cch-hhhcChhhhhchhhhheecchhhhhc
Confidence 455678889999999998 5565555 8999999999998 888 89999999999999999999999999
Q ss_pred cchhhhcCCCccEEecCCCCC-cCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccC
Q 043587 193 LPETLCELYNLETLDISGCFD-LEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNL 269 (285)
Q Consensus 193 lp~~i~~l~~L~~L~l~~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l 269 (285)
+|.++|.++-|++||+..|+. ...+|..|..+..|+.|.+++|.+- .+|..++++.+|+.|.+.. -...+.+++.|
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~l 172 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL 172 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHH
Confidence 999999999999999999873 3458989999999999999999664 8999999999999999887 56788999999
Q ss_pred CcCCCceecccC
Q 043587 270 EHLQICGIRRLG 281 (285)
Q Consensus 270 ~~L~~L~i~~~~ 281 (285)
++|++|.|.+..
T Consensus 173 t~lrelhiqgnr 184 (264)
T KOG0617|consen 173 TRLRELHIQGNR 184 (264)
T ss_pred HHHHHHhcccce
Confidence 999999987753
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=9.4e-17 Score=142.07 Aligned_cols=258 Identities=19% Similarity=0.224 Sum_probs=175.0
Q ss_pred CceeccccCCch------hhhccccccCCCCCHHHHHHHHHHHHhhCCCCccccccCCCceeeEecChHHHHHHHHhhcc
Q 043587 2 SSLLLSYNDLPS------KLKRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSEN 75 (285)
Q Consensus 2 ~~L~lSy~~L~~------~lk~cf~~~~~~~~~~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~ 75 (285)
.+|.||.|.|.. ..|.-.+-......++.+-...|-.|++.=|+..+...-. .++..++.+.......
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe------~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE------MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh------hcCHHHHHHhhhhhhh
Confidence 467777776642 2233333333344555566666777777777766554321 3444555444322211
Q ss_pred cee-EeeeCCcccccccCCCCCceeEEEEEecC--CcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccc
Q 043587 76 ECL-SLEINGSEELDVTNSLDEKVRHLMLIIGE--GAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLR 152 (285)
Q Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~ 152 (285)
-+. ....-..... .....+..|.+++.+ ...+|.++.++.+|+.++++.|. ... .|+.+-.+++|+
T Consensus 180 Ls~NPL~hfQLrQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------Lp~-vPecly~l~~Lr 248 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------LPI-VPECLYKLRNLR 248 (1255)
T ss_pred cCCChhhHHHHhcC----ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC------CCc-chHHHhhhhhhh
Confidence 000 0000000000 123344444444433 22388888999999999999987 434 477788899999
Q ss_pred eeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCc-CcCcccccccCCCceee
Q 043587 153 ALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDL-EELPKGIGKLVNMKHLL 231 (285)
Q Consensus 153 ~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~-~~lp~~l~~l~~L~~L~ 231 (285)
.|+|+ +|. ++++...++.+.+|++|+++.|+++.+|..+.+|++|+.|.+.+|+.. .-+|++||+|..|+.+.
T Consensus 249 rLNLS-----~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 249 RLNLS-----GNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred eeccC-----cCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 99999 888 677777788888999999999999999999999999999988888732 44788999999999998
Q ss_pred cCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccCCC
Q 043587 232 NSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLGYV 283 (285)
Q Consensus 232 l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~~~ 283 (285)
..+|.+ ..+|.++.+|..|+.|.++. -...|..+.-|+.|++||+...+++
T Consensus 323 aanN~L-ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 323 AANNKL-ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhcccc-ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 888744 58889999999999998887 5567777888888888888887764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=7.6e-17 Score=142.64 Aligned_cols=172 Identities=24% Similarity=0.307 Sum_probs=96.9
Q ss_pred ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587 97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK 176 (285)
Q Consensus 97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~ 176 (285)
++.+|++..++...+...+..++.||++.+..|.. ...-.|..+-.+..|.+|||+ +|+ ..+.|..+..
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L-----KnsGiP~diF~l~dLt~lDLS-----hNq-L~EvP~~LE~ 124 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL-----KNSGIPTDIFRLKDLTILDLS-----HNQ-LREVPTNLEY 124 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc-----ccCCCCchhcccccceeeecc-----hhh-hhhcchhhhh
Confidence 45555555555555555555556666666555542 111122234456666666666 555 5555555555
Q ss_pred cCCCceEecccccccccchhhh-cCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCc----------------
Q 043587 177 LVHLRYLSLSFQHIEKLPETLC-ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR---------------- 239 (285)
Q Consensus 177 l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~---------------- 239 (285)
-+++-+|+|++|+|..+|..+. +|+-|-.|+|++|+ +..+|+.+..|..|+.|++++|++..
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 5666666666666666665433 55666666666665 56666666666666666666554432
Q ss_pred ---------ccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587 240 ---------YMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 240 ---------~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
.+|.++..+.+|+.++++. -+..|..+.++++|+.|++++.
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 3455555566666666655 3445555666666666666654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=1.1e-16 Score=140.47 Aligned_cols=175 Identities=17% Similarity=0.098 Sum_probs=130.4
Q ss_pred CCCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
....++.++.+..+.... -..++.+++.|+.|++++|. +..+.++.++..+.|++|+|+ .|++...-+
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na------I~rih~d~WsftqkL~~LdLs-----~N~i~~l~~ 334 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA------IQRIHIDSWSFTQKLKELDLS-----SNRITRLDE 334 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhh------hheeecchhhhcccceeEecc-----ccccccCCh
Confidence 356778888888887766 44577888888888888887 666667778888888888888 888444445
Q ss_pred ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcC---cccccccCCCceeecCCCCCCcccCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEEL---PKGIGKLVNMKHLLNSRTSSVRYMPVGIGR 247 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~l---p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~ 247 (285)
.++..+..|+.|+|+.|++..+.+ .+..+.+|++|||+.|.....+ ...+..|++|+.|++.+|++...--.+|..
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 677788888888888888887765 4567888999999988754332 335667899999999998776333367888
Q ss_pred CCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587 248 LTGLRTLGEFT---KACRLESLKNLEHLQICGIRR 279 (285)
Q Consensus 248 l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~ 279 (285)
+++|+.|++.+ ..-.+..+..+ +|++|-++.
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99999999887 44455666666 677765543
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-15 Score=132.49 Aligned_cols=180 Identities=17% Similarity=0.115 Sum_probs=119.5
Q ss_pred CceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccc-------------
Q 043587 96 EKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYH------------- 161 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~------------- 161 (285)
.++++|.+..+.+.. -...|.++.+|.+|.++.|+ ...+++..|.+++.|+.|+|.-|++
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr------ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR------ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCc------ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence 466777777776655 34466666666666666666 4444555566666666666652210
Q ss_pred ------ccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCC
Q 043587 162 ------SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSR 234 (285)
Q Consensus 162 ------~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 234 (285)
.+|.+...-...|..+.+++.|+|..|++..+-+ ++.+|++|+.|+++.|.+.+.-+.++...++|+.|++++
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 1444222223456667777777777777776643 567888888888888885566677777888888888888
Q ss_pred CCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 235 TSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 235 ~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
|.+..--+..+..+..|++|.+++ .--....+..+++|++||+.+.+
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 877765566788888888888887 22334457778888888877643
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=1.3e-13 Score=136.61 Aligned_cols=127 Identities=31% Similarity=0.361 Sum_probs=76.4
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
+.++|.|.+..+....+|..+ ...+|+.|++.++. ...+ +..+..+++|+.|+++ ++...+.+| .+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~------l~~L-~~~~~~l~~Lk~L~Ls-----~~~~l~~ip-~l 653 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK------LEKL-WDGVHSLTGLRNIDLR-----GSKNLKEIP-DL 653 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc------cccc-ccccccCCCCCEEECC-----CCCCcCcCC-cc
Confidence 456777777766666566554 45677777777665 3332 3334566667777776 544345555 35
Q ss_pred cccCCCceEeccccc-ccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCC
Q 043587 175 EKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTS 236 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 236 (285)
+.+++|++|++++|. +..+|..++++++|+.|++++|..++.+|..+ ++++|++|++++|.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 566666666666654 55666666666666666666665566666544 45555555555554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=2.1e-14 Score=121.09 Aligned_cols=159 Identities=21% Similarity=0.205 Sum_probs=114.6
Q ss_pred ecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEe
Q 043587 105 IGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLS 184 (285)
Q Consensus 105 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~ 184 (285)
.+++...|..+..+.++..+++.+|. ....++..+. |+.|+.||.. .|- .+.+|..++.+.+|.-|+
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~------l~~l~~~~i~-m~~L~~ld~~-----~N~-L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNK------LKALPENHIA-MKRLKHLDCN-----SNL-LETLPPELGGLESLELLY 212 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccc------hhhCCHHHHH-HHHHHhcccc-----hhh-hhcCChhhcchhhhHHHH
Confidence 34444455555556666666666655 4444444333 7777777776 555 777888888888888888
Q ss_pred cccccccccchhhhcCCCccEEecCCCCCcCcCccccc-ccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccC
Q 043587 185 LSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIG-KLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KAC 261 (285)
Q Consensus 185 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~ 261 (285)
+..|.+..+| +++++..|..+.++.|+ ++.+|+.++ .++++..||+.+|++. ..|.++.-+.+|+.|++++ ...
T Consensus 213 L~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 213 LRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred hhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 8888888887 67777778888887776 777887765 7888888888888665 7888888888888888887 556
Q ss_pred CccccccCCcCCCceeccc
Q 043587 262 RLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 262 ~~~~l~~l~~L~~L~i~~~ 280 (285)
.+-++++| +|+.|-+.+.
T Consensus 290 Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred CCcccccc-eeeehhhcCC
Confidence 77778888 6887776654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.27 E-value=9.4e-14 Score=117.27 Aligned_cols=172 Identities=24% Similarity=0.312 Sum_probs=101.9
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
....+..+.++.+.....|++++.+..+..+++++|. ...+ |..+..+.+++.|+.+ +|. ..++|+.
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~------ls~l-p~~i~s~~~l~~l~~s-----~n~-~~el~~~ 132 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK------LSEL-PEQIGSLISLVKLDCS-----SNE-LKELPDS 132 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch------Hhhc-cHHHhhhhhhhhhhcc-----ccc-eeecCch
Confidence 3456777888888887788888888888888888887 5554 4446667777777777 555 4445555
Q ss_pred ccccCCCceEecccccccccchhhhcCCCccEEecCCCC----------------------CcCcCcccccccCCCceee
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCF----------------------DLEELPKGIGKLVNMKHLL 231 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~----------------------~~~~lp~~l~~l~~L~~L~ 231 (285)
++.+..|..++..+|++..+|++++++.+|..+++.+|+ .++.+|+.++.+.+|..|+
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY 212 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence 665555666666555555555555555555555555554 1444444455555555555
Q ss_pred cCCCCCCcccCCCCCCCCcCCcccccc--ccCCccc-cccCCcCCCceeccc
Q 043587 232 NSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLES-LKNLEHLQICGIRRL 280 (285)
Q Consensus 232 l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~-l~~l~~L~~L~i~~~ 280 (285)
+..|++. .+| .|+.++.|.+|.+.. ..-.+++ +..|++|.+||+...
T Consensus 213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred hhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence 5444433 444 455555555555444 1222222 346666666666543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=5.4e-13 Score=122.96 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=67.3
Q ss_pred cccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCccc
Q 043587 163 RSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYM 241 (285)
Q Consensus 163 ~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 241 (285)
+|.+....-..+-++++|+.|++++|++..+|. .+.++..|+.|+++||+ ++.+|..+.+++.|+.|...+|.+. ..
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 444444333345556666666666666666664 34466666666666666 6666666666666666666666554 55
Q ss_pred CCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 242 PVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 242 p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
| .+..+++|+.++++. ..........-++|+.||+++..
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5 566666666666665 11111111122566666666654
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.4e-13 Score=119.37 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=127.1
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
......++++.+....+|..+..+..|..+.+..|. ...+ +..+..+..|.+|+|+ .|+ ...+|..+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~------~r~i-p~~i~~L~~lt~l~ls-----~Nq-lS~lp~~l 140 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC------IRTI-PEAICNLEALTFLDLS-----SNQ-LSHLPDGL 140 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcc------ceec-chhhhhhhHHHHhhhc-----cch-hhcCChhh
Confidence 445556677777777788888888888888887776 5554 5557788888888888 777 67777777
Q ss_pred cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
+.|+ |+.|-+++|+++.+|+.++.+..|..|+.+.|. +..+|+.++.+.+|+.|.+..|.+. .+|.++..| .|..|
T Consensus 141 C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~l 216 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRL 216 (722)
T ss_pred hcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeee
Confidence 7665 788888888888888888877888888888887 7778888888888888888777665 677777744 37777
Q ss_pred cccc--ccCCccccccCCcCCCceeccc
Q 043587 255 GEFT--KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 255 ~l~~--~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+++. ...+|..+.+|+.|++|-+.+.
T Consensus 217 DfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 217 DFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ecccCceeecchhhhhhhhheeeeeccC
Confidence 7777 5567777788888887766654
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=2.2e-11 Score=104.72 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=122.4
Q ss_pred CCCceeEEEEEecCCcc-------cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCc---cceeeeccccccc
Q 043587 94 LDEKVRHLMLIIGEGAI-------FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTS---LRALDFCESYHSR 163 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~---L~~L~L~~~~~~~ 163 (285)
..++++++.+....... .+..+..+++|+.|+++++. +... .+..+..+.. |+.|+++ +
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~~~~-~~~~~~~l~~~~~L~~L~ls-----~ 117 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-----LGPD-GCGVLESLLRSSSLQELKLN-----N 117 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-----CChh-HHHHHHHHhccCcccEEEee-----C
Confidence 34458888888776541 33466678899999999987 2322 3444555544 9999999 7
Q ss_pred ccCCC----ccccccccc-CCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcC----cCcccccccCCCce
Q 043587 164 SSLTP----EIPRNIEKL-VHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLE----ELPKGIGKLVNMKH 229 (285)
Q Consensus 164 ~~~~~----~~p~~i~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~ 229 (285)
|.+.. .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|...+ .++..+..+++|++
T Consensus 118 ~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~ 197 (319)
T cd00116 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197 (319)
T ss_pred CccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCE
Confidence 77442 233455666 89999999999977 345566777899999999998432 23445566679999
Q ss_pred eecCCCCCCc----ccCCCCCCCCcCCcccccc---ccCCccccc-----cCCcCCCceecccC
Q 043587 230 LLNSRTSSVR----YMPVGIGRLTGLRTLGEFT---KACRLESLK-----NLEHLQICGIRRLG 281 (285)
Q Consensus 230 L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~---~~~~~~~l~-----~l~~L~~L~i~~~~ 281 (285)
|++++|.+.+ .++..+..+++|++|++++ ....+..+. ..+.|+.|++.++.
T Consensus 198 L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 9999997753 2445577888999999987 211222221 24789999998774
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=2.6e-10 Score=107.41 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=96.3
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
.+..++.|.+..+.+..+|..+. .+|++|++++|. ...++.. +. .+|+.|+++ +|+ ...+|..
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~------LtsLP~~-l~--~~L~~L~Ls-----~N~-L~~LP~~ 259 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ------LTSIPAT-LP--DTIQEMELS-----INR-ITELPER 259 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc------cccCChh-hh--ccccEEECc-----CCc-cCcCChh
Confidence 56788999999988887766543 588899988887 3344322 22 357777777 666 4456655
Q ss_pred ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccc-------------------ccCCCceeecCC
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIG-------------------KLVNMKHLLNSR 234 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-------------------~l~~L~~L~l~~ 234 (285)
+. .+|++|++++|.++.+|..+. .+|+.|++++|+ +..+|..+. -.++|+.|++++
T Consensus 260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~ 334 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE 334 (754)
T ss_pred Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccC
Confidence 43 367777777777777766543 467777777775 555554321 113455555555
Q ss_pred CCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587 235 TSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 235 ~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
|.+. .+|..+. ++|+.|++++ -...+..+ .++|+.|+++++
T Consensus 335 N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 335 NALT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRN 377 (754)
T ss_pred Cccc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCC
Confidence 5444 3444332 4666666665 11222222 246777777665
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=2.2e-11 Score=104.71 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=28.7
Q ss_pred ccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcC----cCcccccccCCCceeecCCCCCC
Q 043587 174 IEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLE----ELPKGIGKLVNMKHLLNSRTSSV 238 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~ 238 (285)
+..+.+|++|++++|.++ .++..+..+++|+.|++++|.... .++..+..+++|++|++++|.+.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 334445555555555543 122233334455555555554211 12223334455555555555443
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=4.6e-11 Score=114.11 Aligned_cols=150 Identities=30% Similarity=0.331 Sum_probs=117.9
Q ss_pred hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccC-CCccc-ccccccCCCceEeccccc-ccc
Q 043587 116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSL-TPEIP-RNIEKLVHLRYLSLSFQH-IEK 192 (285)
Q Consensus 116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~p-~~i~~l~~L~~L~l~~~~-l~~ 192 (285)
.+....|...+.++. ...+ +. -...+.|+.|-+. +|.. ...++ ..|..++.|++||+++|. +.+
T Consensus 520 ~~~~~~rr~s~~~~~------~~~~-~~-~~~~~~L~tLll~-----~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK------IEHI-AG-SSENPKLRTLLLQ-----RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred cchhheeEEEEeccc------hhhc-cC-CCCCCccceEEEe-----ecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 455778888888886 3332 22 1345579999988 6641 33333 346779999999999887 889
Q ss_pred cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-----ccCCccccc
Q 043587 193 LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-----KACRLESLK 267 (285)
Q Consensus 193 lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-----~~~~~~~l~ 267 (285)
+|+.|+.|-+|++|+++++. +..+|.++++|++|.+|++..+......|.....+++|++|.+.. +.....++.
T Consensus 587 LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~ 665 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELE 665 (889)
T ss_pred CChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhh
Confidence 99999999999999999998 889999999999999999998876656666666799999999887 456677777
Q ss_pred cCCcCCCceecc
Q 043587 268 NLEHLQICGIRR 279 (285)
Q Consensus 268 ~l~~L~~L~i~~ 279 (285)
+|++|+.+.++.
T Consensus 666 ~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 666 NLEHLENLSITI 677 (889)
T ss_pred cccchhhheeec
Confidence 778887776654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=3.5e-11 Score=101.68 Aligned_cols=176 Identities=19% Similarity=0.198 Sum_probs=114.5
Q ss_pred CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccc-ccCCCcc
Q 043587 93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSR-SSLTPEI 170 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~ 170 (285)
..+.....+.+..+++..+| .+|..+++||.|++++|. +..|-|++|.+++.+..|-+- + |. +..+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvly-----g~Nk-I~~l 131 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLY-----GNNK-ITDL 131 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhh-----cCCc-hhhh
Confidence 57888889999999988855 488899999999999998 777778888888887776665 3 33 4444
Q ss_pred cc-------------------------cccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCc----------
Q 043587 171 PR-------------------------NIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDL---------- 214 (285)
Q Consensus 171 p~-------------------------~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~---------- 214 (285)
|+ .+..+++|..|.+-.|.+..++. .+..+..++++.+..|..+
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 42 33334444444444444444443 3344445555554443310
Q ss_pred ---------------------------------------------------CcCcc-cccccCCCceeecCCCCCCcccC
Q 043587 215 ---------------------------------------------------EELPK-GIGKLVNMKHLLNSRTSSVRYMP 242 (285)
Q Consensus 215 ---------------------------------------------------~~lp~-~l~~l~~L~~L~l~~~~~~~~~p 242 (285)
...|. .|..|++|+.|++++|++.+.-+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 11121 35678888888888888887777
Q ss_pred CCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587 243 VGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 243 ~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
.+|..+..+++|.+.. ....-..+.++..|+.|++++.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence 7788888888887776 2222333566667777776654
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.10 E-value=1.6e-11 Score=113.37 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=114.2
Q ss_pred CCCceeEEEEEecCCcccccchhcc--------------------------ccccEEeecCCCCCCCCchhhHHHHHHhc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRI--------------------------KRMRSLLIDGGRSDHSSLNGEILEELFRE 147 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l--------------------------~~L~~L~l~~~~~~~~~l~~~~~~~~~~~ 147 (285)
..+.+++|+++.+.+..+|+.+... +.|+.|++.+|. +.....| .+.+
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-----Ltd~c~p-~l~~ 381 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-----LTDSCFP-VLVN 381 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-----ccccchh-hhcc
Confidence 4567788888877766544422111 124444444444 3444333 3788
Q ss_pred CCccceeeecccccccccCCCcccc-cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587 148 LTSLRALDFCESYHSRSSLTPEIPR-NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVN 226 (285)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~p~-~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 226 (285)
+++|++|+|+ +|. .+.+|+ .+.++..|+.|+++||.++.+|..+.++..|++|...+|. +..+| .+.+++.
T Consensus 382 ~~hLKVLhLs-----yNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 382 FKHLKVLHLS-----YNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQ 453 (1081)
T ss_pred ccceeeeeec-----ccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCc
Confidence 9999999999 888 777775 4678999999999999999999999999999999999998 88999 8999999
Q ss_pred CceeecCCCCCCc-ccCCCCCCCCcCCcccccc
Q 043587 227 MKHLLNSRTSSVR-YMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 227 L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~ 258 (285)
|+.+|++.|++.. .+|..... ++|+.|++++
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSG 485 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSG 485 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCC-cccceeeccC
Confidence 9999999998764 23333333 8999999998
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=7.8e-11 Score=91.38 Aligned_cols=127 Identities=23% Similarity=0.296 Sum_probs=50.6
Q ss_pred hhccccccEEeecCCCCCCCCchhhHHHHHHh-cCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587 115 TRRIKRMRSLLIDGGRSDHSSLNGEILEELFR-ELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL 193 (285)
Q Consensus 115 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l 193 (285)
+.+..+++.|++.++. +..+ .. ++ .+.+|++|+++ +|. +..++ .+..+++|++|++++|.++.+
T Consensus 15 ~~n~~~~~~L~L~~n~------I~~I-e~-L~~~l~~L~~L~Ls-----~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ------ISTI-EN-LGATLDKLEVLDLS-----NNQ-ITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------------S---TT-TT--EEE-T-----TS---S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccccccccc------cccc-cc-hhhhhcCCCEEECC-----CCC-Ccccc-CccChhhhhhcccCCCCCCcc
Confidence 3455678888888887 4443 22 44 46788999998 887 55553 577788999999999999888
Q ss_pred chhhh-cCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccCC----CCCCCCcCCcccccc
Q 043587 194 PETLC-ELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMPV----GIGRLTGLRTLGEFT 258 (285)
Q Consensus 194 p~~i~-~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~ 258 (285)
++.+. .+++|+.|++++|+ +..+- ..+..+++|++|++.+|++... +. -+..+++|+.||...
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 66553 68899999999987 54442 3567888999999999987642 32 366788888888765
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=2.6e-10 Score=107.45 Aligned_cols=159 Identities=23% Similarity=0.277 Sum_probs=101.0
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..+++.|.+..+.+..+|..+. .+|+.|++++|. ...++.. +. .+|+.|+++ +|+ ...+|..+
T Consensus 219 ~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~------L~~LP~~-l~--s~L~~L~Ls-----~N~-L~~LP~~l 281 (754)
T PRK15370 219 QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINR------ITELPER-LP--SALQSLDLF-----HNK-ISCLPENL 281 (754)
T ss_pred ccCCCEEECCCCccccCChhhh--ccccEEECcCCc------cCcCChh-Hh--CCCCEEECc-----CCc-cCcccccc
Confidence 4578888888877766655443 367777777776 3343222 22 356777776 665 33455544
Q ss_pred cccCCCceEecccccccccchhhh-------------------cCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLC-------------------ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT 235 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~-------------------~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 235 (285)
. .+|++|++++|.++.+|..+. -.++|+.|++++|. +..+|..+. ++|+.|++++|
T Consensus 282 ~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 282 P--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASLP--PELQVLDVSKN 356 (754)
T ss_pred C--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhhc--CcccEEECCCC
Confidence 3 356666666666555543221 12578888888887 667887653 68999999999
Q ss_pred CCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587 236 SSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 236 ~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++. .+|..+. ++|+.|++++ -...+..+. ..|+.|+++++
T Consensus 357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 357 QIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred CCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC
Confidence 876 6776553 6899999987 223333333 24667776654
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=2.9e-10 Score=100.83 Aligned_cols=170 Identities=25% Similarity=0.311 Sum_probs=133.3
Q ss_pred CceeEEEEEecCCcccccchhccc-cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 96 EKVRHLMLIIGEGAIFPVSTRRIK-RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
+.+..+.+..+.+..++....... +|+.|++.+|. ...+ +..+..+++|+.|+++ .|+ +..+|...
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~------i~~l-~~~~~~l~~L~~L~l~-----~N~-l~~l~~~~ 182 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK------IESL-PSPLRNLPNLKNLDLS-----FND-LSDLPKLL 182 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc------hhhh-hhhhhccccccccccC-----Cch-hhhhhhhh
Confidence 467888888888887777777774 89999999987 5554 3447888999999998 888 77777776
Q ss_pred cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
+.++.|+.|++++|.+..+|..++.+..|+++.+++|. ....+..+.++.++..+.+.+|++. ..|..++.+++++.|
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L 260 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee-eccchhcccccccee
Confidence 68888999999999999998877777779999999886 5556667888888888887777554 457788888899999
Q ss_pred cccc-ccCCccccccCCcCCCceeccc
Q 043587 255 GEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+++. ....+..++.+.+|+.|++++.
T Consensus 261 ~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 261 DLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccccccccccCccCEEeccCc
Confidence 9888 3334444888888888888764
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=5e-10 Score=104.45 Aligned_cols=103 Identities=25% Similarity=0.334 Sum_probs=85.4
Q ss_pred cceeeecccccccccCCCcccccccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCce
Q 043587 151 LRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKH 229 (285)
Q Consensus 151 L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~ 229 (285)
++.|+|+ +|.+.+.+|..++.+.+|++|+|++|.+. .+|..++.+++|+.|++++|+..+.+|..++++++|++
T Consensus 420 v~~L~L~-----~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLD-----NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECC-----CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 6778888 88877888888999999999999999876 77888889999999999999877788888999999999
Q ss_pred eecCCCCCCcccCCCCCCC-CcCCcccccc
Q 043587 230 LLNSRTSSVRYMPVGIGRL-TGLRTLGEFT 258 (285)
Q Consensus 230 L~l~~~~~~~~~p~~~~~l-~~L~~L~l~~ 258 (285)
|++++|.+.+.+|..++.+ .++..+++.+
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecC
Confidence 9999998888888877653 3555665554
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.6e-10 Score=88.45 Aligned_cols=124 Identities=24% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
+..++.|++.++.+..+...-..+.+|+.|++++|. ...+ .. +..++.|+.|+++ +|. +..++..+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~------I~~l-~~-l~~L~~L~~L~L~-----~N~-I~~i~~~l 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ------ITKL-EG-LPGLPRLKTLDLS-----NNR-ISSISEGL 83 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--------S---TT-----TT--EEE-------SS----S-CHHH
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCC------Cccc-cC-ccChhhhhhcccC-----CCC-CCccccch
Confidence 456799999999988654332367899999999998 5554 33 7789999999999 888 55565455
Q ss_pred -cccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcCcc----cccccCCCceeecC
Q 043587 175 -EKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEELPK----GIGKLVNMKHLLNS 233 (285)
Q Consensus 175 -~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~ 233 (285)
..+++|+.|++++|++..+- ..+..+++|+.|++.+|. ....+. -+..+|+|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 36899999999999987553 467789999999999998 544443 45789999999864
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.98 E-value=3.5e-09 Score=99.63 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=19.7
Q ss_pred cCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587 250 GLRTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 250 ~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+|+.|++++ -...|..+..+++|+.|+++++.
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 445555555 33455667777777777776653
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=2.7e-09 Score=99.58 Aligned_cols=112 Identities=21% Similarity=0.376 Sum_probs=95.5
Q ss_pred cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccc-ccchhhh
Q 043587 120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KLPETLC 198 (285)
Q Consensus 120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~ 198 (285)
.++.|++.++. +.+.+ |..+..+++|+.|+|+ +|.+.+.+|..++.+.+|++|++++|.+. .+|+.++
T Consensus 419 ~v~~L~L~~n~-----L~g~i-p~~i~~L~~L~~L~Ls-----~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQG-----LRGFI-PNDISKLRHLQSINLS-----GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCC-----ccccC-CHHHhCCCCCCEEECC-----CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 47888998887 45565 5569999999999999 99988899999999999999999999987 7899999
Q ss_pred cCCCccEEecCCCCCcCcCccccccc-CCCceeecCCCCCCcccC
Q 043587 199 ELYNLETLDISGCFDLEELPKGIGKL-VNMKHLLNSRTSSVRYMP 242 (285)
Q Consensus 199 ~l~~L~~L~l~~~~~~~~lp~~l~~l-~~L~~L~l~~~~~~~~~p 242 (285)
++++|+.|++++|...+.+|..++.+ .++..+++.+|......|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999888999988764 467889998886554444
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=3.8e-11 Score=105.78 Aligned_cols=145 Identities=22% Similarity=0.302 Sum_probs=118.3
Q ss_pred ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587 97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK 176 (285)
Q Consensus 97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~ 176 (285)
.+..+.++.+.+..++..++.+..|.+|+++.|+ .... |..+..++ |++|-++ +|+ .+.+|..++.
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq------lS~l-p~~lC~lp-Lkvli~s-----NNk-l~~lp~~ig~ 164 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ------LSHL-PDGLCDLP-LKVLIVS-----NNK-LTSLPEEIGL 164 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccch------hhcC-ChhhhcCc-ceeEEEe-----cCc-cccCCccccc
Confidence 3455556666666688899999999999999998 4453 33355454 8899888 777 7888888998
Q ss_pred cCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccc
Q 043587 177 LVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGE 256 (285)
Q Consensus 177 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 256 (285)
+.+|..|+.+.|.+..+|..++.+.+|+.|.++.|+ +..+|+.+..| .|..||++.|++. .+|-.|.+|..|++|-+
T Consensus 165 ~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred chhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence 888999999999999999999999999999999988 78888888854 6889999888776 88999999999999988
Q ss_pred cc
Q 043587 257 FT 258 (285)
Q Consensus 257 ~~ 258 (285)
.+
T Consensus 242 en 243 (722)
T KOG0532|consen 242 EN 243 (722)
T ss_pred cc
Confidence 87
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=1.7e-10 Score=94.50 Aligned_cols=129 Identities=24% Similarity=0.238 Sum_probs=74.0
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL 193 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l 193 (285)
.+.....|+++++++|. +..+ .....-.+.+++|+++ +|. +..+. ++..+++|..||+++|.++++
T Consensus 279 ~~dTWq~LtelDLS~N~------I~~i-DESvKL~Pkir~L~lS-----~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNL------ITQI-DESVKLAPKLRRLILS-----QNR-IRTVQ-NLAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred ecchHhhhhhccccccc------hhhh-hhhhhhccceeEEecc-----ccc-eeeeh-hhhhcccceEeecccchhHhh
Confidence 33444566666776665 4443 3334555666667766 555 33332 355566666666666666666
Q ss_pred chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCc-ccCCCCCCCCcCCcccccc
Q 043587 194 PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR-YMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 194 p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~ 258 (285)
..+-.+|-+.++|.+++|. ++.+. ++++|.+|..||+++|++-. .-...||+++.|+.+.+-+
T Consensus 345 ~Gwh~KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhhHhhhcCEeeeehhhhh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 5444456666666666665 55553 56666666666666665432 1124566666666665554
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=2.5e-08 Score=93.94 Aligned_cols=119 Identities=19% Similarity=0.150 Sum_probs=59.5
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHH-----------------hcCCccceeee
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELF-----------------RELTSLRALDF 156 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~-----------------~~~~~L~~L~L 156 (285)
.+.+++.|.+..+.+..+|. .+++|++|++++|. ...+ |..+ ....+|+.|++
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~------LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~L 289 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ------LTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWI 289 (788)
T ss_pred hhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCc------cCcc-cCcccccceeeccCCchhhhhhchhhcCEEEC
Confidence 34466777777776665443 24667777777765 2222 1100 01123444555
Q ss_pred cccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCC
Q 043587 157 CESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTS 236 (285)
Q Consensus 157 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 236 (285)
+ +|+ ...+|.. +++|++|++++|+++.+|... .+|+.|++++|. ++.+|. ...+|++|++++|+
T Consensus 290 s-----~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 290 F-----GNQ-LTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQ 353 (788)
T ss_pred c-----CCc-ccccccc---ccccceeECCCCccccCCCCc---ccccccccccCc-cccccc---cccccceEecCCCc
Confidence 5 555 3344432 356777777777777665421 233444444443 333332 11245555555554
Q ss_pred CC
Q 043587 237 SV 238 (285)
Q Consensus 237 ~~ 238 (285)
+.
T Consensus 354 Ls 355 (788)
T PRK15387 354 LA 355 (788)
T ss_pred cC
Confidence 44
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=2.2e-09 Score=95.23 Aligned_cols=166 Identities=26% Similarity=0.326 Sum_probs=127.4
Q ss_pred EEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCC-ccceeeecccccccccCCCcccccccccCC
Q 043587 101 LMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELT-SLRALDFCESYHSRSSLTPEIPRNIEKLVH 179 (285)
Q Consensus 101 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~ 179 (285)
+....+........+..++.++.|.+.++. ..++ +.....+. +|+.|+++ +|+ +..+|..++.++.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~------i~~i-~~~~~~~~~nL~~L~l~-----~N~-i~~l~~~~~~l~~ 164 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN------ITDI-PPLIGLLKSNLKELDLS-----DNK-IESLPSPLRNLPN 164 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc------cccC-ccccccchhhccccccc-----ccc-hhhhhhhhhcccc
Confidence 444444443334455666789999999887 5554 33345553 89999999 888 7777778899999
Q ss_pred CceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-
Q 043587 180 LRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT- 258 (285)
Q Consensus 180 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~- 258 (285)
|+.|+++.|++..+|...+.+++|+.|++++|+ +..+|..+..+..|+.|.+++|... ..+..+..+.++..+.+.+
T Consensus 165 L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred ccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence 999999999999999877788999999999998 8889887777777999999988644 5667788888888888666
Q ss_pred -ccCCccccccCCcCCCceecccC
Q 043587 259 -KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 259 -~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
....+..++.++.++.|++++..
T Consensus 243 ~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 243 KLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeeeccchhccccccceecccccc
Confidence 22336778888888888887654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.1e-09 Score=89.87 Aligned_cols=128 Identities=26% Similarity=0.288 Sum_probs=78.2
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
+..+..++++.+.+..+..++.=.+.+|.|++++|. ...+ .. +..+++|..|||+ +|. ...+..+-
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~------i~~v-~n-La~L~~L~~LDLS-----~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR------IRTV-QN-LAELPQLQLLDLS-----GNL-LAECVGWH 348 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc------eeee-hh-hhhcccceEeecc-----cch-hHhhhhhH
Confidence 445566666666666556666666677777777776 3332 22 5666677777776 555 33333344
Q ss_pred cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCC
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSV 238 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~ 238 (285)
.++-+.+.|.+++|.++.+ +++++|.+|..||+++|+ ++.+. .+||+||.|+++.+.+|++.
T Consensus 349 ~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 4555666777777766665 356667777777777766 44442 35667777777777666655
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.4e-09 Score=91.81 Aligned_cols=101 Identities=24% Similarity=0.185 Sum_probs=49.3
Q ss_pred ccCCCceEeccccc-ccccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCc-ccCCC-----CC
Q 043587 176 KLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVR-YMPVG-----IG 246 (285)
Q Consensus 176 ~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~-~~p~~-----~~ 246 (285)
.+++|+.|.+.+|. +..-.....-++.|+.|+|++|+ +-..+ ..++.++.|+.|+++.|.+.. ..|+. ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 34555555555552 11111112234556666666665 33333 345566666666666664432 22322 24
Q ss_pred CCCcCCcccccc----ccCCccccccCCcCCCcee
Q 043587 247 RLTGLRTLGEFT----KACRLESLKNLEHLQICGI 277 (285)
Q Consensus 247 ~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i 277 (285)
.+++|+.|++.. .+..+..+..+++|+.|.+
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhc
Confidence 455666666555 3445555555555555543
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.4e-08 Score=64.95 Aligned_cols=57 Identities=33% Similarity=0.485 Sum_probs=30.8
Q ss_pred CCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCC
Q 043587 179 HLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTS 236 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~ 236 (285)
+|++|++++|+++.+|+ .+.++++|++|++++|. +..+| ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555553 34455566666666555 33333 244555666666665553
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.6e-09 Score=88.17 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=42.9
Q ss_pred HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcC--ccc
Q 043587 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEEL--PKG 220 (285)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~l--p~~ 220 (285)
...+++|.+|+|+ +|......-....-+..|+.|+|++|.+-..+ ..++.++.|+.|+++.|. +..+ |+.
T Consensus 218 ~~~fPsl~~L~L~-----~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~ 291 (505)
T KOG3207|consen 218 LLTFPSLEVLYLE-----ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDV 291 (505)
T ss_pred HHhCCcHHHhhhh-----cccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCc
Confidence 3445555555555 44212211111222445666666666644444 345566666666666665 3221 221
Q ss_pred -----ccccCCCceeecCCCCC
Q 043587 221 -----IGKLVNMKHLLNSRTSS 237 (285)
Q Consensus 221 -----l~~l~~L~~L~l~~~~~ 237 (285)
...+++|++|++..|++
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cchhhhcccccceeeecccCcc
Confidence 23456666666666655
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=7.5e-08 Score=61.48 Aligned_cols=58 Identities=31% Similarity=0.480 Sum_probs=46.8
Q ss_pred CccceeeecccccccccCCCccc-ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCC
Q 043587 149 TSLRALDFCESYHSRSSLTPEIP-RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCF 212 (285)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 212 (285)
++|++|+++ +|+ ...+| ..+..+++|++|++++|.++.+|+ .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~-----~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLS-----NNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEET-----SST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECC-----CCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468888888 887 44554 677888999999999999888865 66789999999998886
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.43 E-value=1.5e-08 Score=86.10 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=107.0
Q ss_pred EEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCce
Q 043587 103 LIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRY 182 (285)
Q Consensus 103 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~ 182 (285)
........+|..+. ..-..+.+..|. +..+++.+|+.+++||.|||+ .|+|...-|..|..+..|-.
T Consensus 53 Cr~~GL~eVP~~LP--~~tveirLdqN~------I~~iP~~aF~~l~~LRrLdLS-----~N~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP--PETVEIRLDQNQ------ISSIPPGAFKTLHRLRRLDLS-----KNNISFIAPDAFKGLASLLS 119 (498)
T ss_pred ccCCCcccCcccCC--CcceEEEeccCC------cccCChhhccchhhhceeccc-----ccchhhcChHhhhhhHhhhH
Confidence 33344444443322 346677888888 888899999999999999999 89966667899999999888
Q ss_pred Eeccc-ccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCC-CCCCCCcCCccccc
Q 043587 183 LSLSF-QHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPV-GIGRLTGLRTLGEF 257 (285)
Q Consensus 183 L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~ 257 (285)
|-+.+ |+|+.+|. .+++|.+|+-|.+.-|+........+..|++|+.|.+.+|.+. .++. .+..+.+++++.+.
T Consensus 120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhh
Confidence 76655 88999996 5779999999999998844444567889999999999888655 4443 56667777766554
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=7.6e-07 Score=52.50 Aligned_cols=34 Identities=44% Similarity=0.526 Sum_probs=17.0
Q ss_pred CCceEecccccccccchhhhcCCCccEEecCCCC
Q 043587 179 HLRYLSLSFQHIEKLPETLCELYNLETLDISGCF 212 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 212 (285)
+|++|++++|+++.+|+.++++++|++|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555445555555555555554
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-08 Score=83.29 Aligned_cols=171 Identities=18% Similarity=0.142 Sum_probs=96.6
Q ss_pred ceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc--cc
Q 043587 97 KVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI--PR 172 (285)
Q Consensus 97 ~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--p~ 172 (285)
.+++++++...++. ....+..+.+|+-|.+.+++ +...+ ...+..-.+|+.|+++ .+.-.+.. .-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-----LdD~I-~~~iAkN~~L~~lnls-----m~sG~t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-----LDDPI-VNTIAKNSNLVRLNLS-----MCSGFTENALQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-----cCcHH-HHHHhccccceeeccc-----cccccchhHHHH
Confidence 46666776665554 44456677777777777776 34444 3336666777777777 54422221 12
Q ss_pred cccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCC-cC--cCcccccccCCCceeecCCCCCCc-ccCC
Q 043587 173 NIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFD-LE--ELPKGIGKLVNMKHLLNSRTSSVR-YMPV 243 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~-~~--~lp~~l~~l~~L~~L~l~~~~~~~-~~p~ 243 (285)
-+.++..|..|++++|.+. .+...++ ++|..|+++||.. +. .+..-..++|+|.+||+++|.... ..-.
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 2445667777777777643 1111222 4566667766641 11 111112356677777777764332 1223
Q ss_pred CCCCCCcCCcccccc----ccCCccccccCCcCCCceeccc
Q 043587 244 GIGRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 244 ~~~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
.|-+++.|++|.++. .+..+-.+...+.|..|++.+|
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 455666777777666 4555666677777777776655
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=1.8e-07 Score=78.33 Aligned_cols=176 Identities=15% Similarity=0.045 Sum_probs=122.1
Q ss_pred CCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHHH-------------HhcCCccceeee
Q 043587 95 DEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEEL-------------FRELTSLRALDF 156 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-------------~~~~~~L~~L~L 156 (285)
.+.++.++++.|.+.. +..-+..+..|+.|++++|. .+..-... ...-+.||++..
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G------lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG------LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC------CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 3488999999886654 33455678889999999997 33221221 244577999999
Q ss_pred cccccccccCCCc-----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcCc----Cccccc
Q 043587 157 CESYHSRSSLTPE-----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLEE----LPKGIG 222 (285)
Q Consensus 157 ~~~~~~~~~~~~~-----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~----lp~~l~ 222 (285)
+ +|. .+. +...+...+.|+.+.+..|.|. -+...+..+++|++||++.|.+... +...+.
T Consensus 165 ~-----rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 165 G-----RNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred e-----ccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 8 666 433 3345666789999999999865 2334667889999999999975433 334556
Q ss_pred ccCCCceeecCCCCCCcccC----CC-CCCCCcCCcccccc-------ccCCccccccCCcCCCceecccCC
Q 043587 223 KLVNMKHLLNSRTSSVRYMP----VG-IGRLTGLRTLGEFT-------KACRLESLKNLEHLQICGIRRLGY 282 (285)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~p----~~-~~~l~~L~~L~l~~-------~~~~~~~l~~l~~L~~L~i~~~~~ 282 (285)
.+++|+.|++++|.+...-. .. -...++|++|.+.+ .......+...+.|+.|++++++-
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 78899999999996654211 11 23478899999877 233444456688999999988753
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=2e-07 Score=83.23 Aligned_cols=85 Identities=34% Similarity=0.483 Sum_probs=39.8
Q ss_pred HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccccc
Q 043587 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKL 224 (285)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 224 (285)
+..+++|..|++. .|. +..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|. +..++ .+..+
T Consensus 91 l~~~~~l~~l~l~-----~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l 161 (414)
T KOG0531|consen 91 LSKLKSLEALDLY-----DNK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESL 161 (414)
T ss_pred cccccceeeeecc-----ccc-hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CCccc
Confidence 3444555555554 444 3333222444555555555555555442 34444445555555554 43332 33334
Q ss_pred CCCceeecCCCCCC
Q 043587 225 VNMKHLLNSRTSSV 238 (285)
Q Consensus 225 ~~L~~L~l~~~~~~ 238 (285)
+.|+.+++++|.+.
T Consensus 162 ~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIV 175 (414)
T ss_pred hhhhcccCCcchhh
Confidence 55555555555443
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=2.5e-06 Score=50.24 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=33.3
Q ss_pred CccceeeecccccccccCCCcccccccccCCCceEecccccccccch
Q 043587 149 TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE 195 (285)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~ 195 (285)
++|++|+++ +|+ +..+|..++++++|++|++++|+++.++.
T Consensus 1 ~~L~~L~l~-----~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-----NNQ-ITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEET-----SSS--SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEcc-----CCC-CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 478999999 888 66788779999999999999999887753
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=1.8e-06 Score=81.02 Aligned_cols=129 Identities=21% Similarity=0.179 Sum_probs=65.2
Q ss_pred ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC-cccccccccCCCceEecccccccccchhh
Q 043587 119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP-EIPRNIEKLVHLRYLSLSFQHIEKLPETL 197 (285)
Q Consensus 119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~p~~i~~l~~L~~L~l~~~~l~~lp~~i 197 (285)
.+|+.|++++... +....+...-..+|+|+.|.++ +-.+.. ++-.-..++++|..||+++++++.+ .++
T Consensus 122 ~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~-----~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVIS-----GRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI 191 (699)
T ss_pred HhhhhcCccccch----hhccHHHHHhhhCcccceEEec-----CceecchhHHHHhhccCccceeecCCCCccCc-HHH
Confidence 3566666666542 2222223323345666666665 333221 1222334566666666666666666 466
Q ss_pred hcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCccc--C----CCCCCCCcCCcccccc
Q 043587 198 CELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYM--P----VGIGRLTGLRTLGEFT 258 (285)
Q Consensus 198 ~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~--p----~~~~~l~~L~~L~l~~ 258 (285)
+.|++||+|.+++-. ..... ..+.+|++|+.||+|........ . +.-..|++|+.|+.++
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 666666666666544 22211 24456666666666654332211 0 1112356666666665
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=6.3e-07 Score=80.04 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=70.6
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
....+..+.+..+.+..+...+..+++|+.|++++|. +..+ .. +..++.|+.|++. +|. +..+. .
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~------I~~i-~~-l~~l~~L~~L~l~-----~N~-i~~~~-~ 157 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK------ITKL-EG-LSTLTLLKELNLS-----GNL-ISDIS-G 157 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc------cccc-cc-hhhccchhhheec-----cCc-chhcc-C
Confidence 4566777777777776555546777888888888886 4443 22 5666668888887 776 44332 4
Q ss_pred ccccCCCceEecccccccccchh-hhcCCCccEEecCCCC
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCF 212 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 212 (285)
+..+..|+.+++++|.+..++.. ...+.+++.+++.+|.
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 44577788888888887766542 4677777777777776
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.11 E-value=1.9e-06 Score=80.93 Aligned_cols=134 Identities=23% Similarity=0.283 Sum_probs=97.3
Q ss_pred CCceeEEEEEecCCcc--cccch-hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 95 DEKVRHLMLIIGEGAI--FPVST-RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~--~~~~~-~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..++++|++.+..... ++..+ .-+|.|++|.+.+-. +..+-....+.++++|+.||++ +++ +..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS-----~Tn-I~nl- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDIS-----GTN-ISNL- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-----ecchhHHHHhhccCccceeecC-----CCC-ccCc-
Confidence 4578888887765433 33333 467999999998865 2333235557899999999999 888 5555
Q ss_pred ccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcC--c----ccccccCCCceeecCCCCCCcc
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEEL--P----KGIGKLVNMKHLLNSRTSSVRY 240 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~l--p----~~l~~l~~L~~L~l~~~~~~~~ 240 (285)
..++.+++|+.|.+.+-.+.... ..+.+|++|++||+|........ . +.-..||.||.||.++..+...
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 68999999999999988877443 46789999999999987633221 1 1223589999999998765543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.3e-07 Score=86.29 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=45.7
Q ss_pred CCccceeeecccccccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587 148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVN 226 (285)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 226 (285)
++.++.|+|+ +|+ ..... .+..+++|+.|||++|.++.+|. +.... .|+.|.+++|. ++++- ++.+|++
T Consensus 186 l~ale~LnLs-----hNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 186 LPALESLNLS-----HNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLR-GIENLKS 255 (1096)
T ss_pred HHHhhhhccc-----hhh-hhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhh-hHHhhhh
Confidence 4445555555 555 22222 44455555555555555554443 11122 25555555554 44442 4555555
Q ss_pred CceeecCCCCCCccc-CCCCCCCCcCCcccccc
Q 043587 227 MKHLLNSRTSSVRYM-PVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 227 L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~ 258 (285)
|+.||+++|-+.+.- -..+..+..|+.|++.+
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 555555555333210 01133444445555444
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.7e-07 Score=74.56 Aligned_cols=154 Identities=19% Similarity=0.111 Sum_probs=108.2
Q ss_pred CCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc--
Q 043587 94 LDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-- 170 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-- 170 (285)
....++.+++.+..... +...++.-.+|+.|+++.+. .+...-....+.+++.|..|+++ +|......
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s----G~t~n~~~ll~~scs~L~~LNls-----Wc~l~~~~Vt 278 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS----GFTENALQLLLSSCSRLDELNLS-----WCFLFTEKVT 278 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeecccccc----ccchhHHHHHHHhhhhHhhcCch-----Hhhccchhhh
Confidence 45578888999888776 66778888999999998875 24555556668899999999999 66534331
Q ss_pred --cccccccCCCceEeccccc----ccccchhhhcCCCccEEecCCCCCcCc-CcccccccCCCceeecCCCCCCc-ccC
Q 043587 171 --PRNIEKLVHLRYLSLSFQH----IEKLPETLCELYNLETLDISGCFDLEE-LPKGIGKLVNMKHLLNSRTSSVR-YMP 242 (285)
Q Consensus 171 --p~~i~~l~~L~~L~l~~~~----l~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~-~~p 242 (285)
-..++ ++|..|+++|+. ...+..-....++|..||++.|..+.. .-..+.+++.|++|.++.|.... ..-
T Consensus 279 v~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 279 VAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred HHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe
Confidence 12232 568889998886 222323345778899999999864443 23456788899999998885321 111
Q ss_pred CCCCCCCcCCcccccc
Q 043587 243 VGIGRLTGLRTLGEFT 258 (285)
Q Consensus 243 ~~~~~l~~L~~L~l~~ 258 (285)
-.+...++|..|+.++
T Consensus 357 ~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFG 372 (419)
T ss_pred eeeccCcceEEEEecc
Confidence 3467888888888887
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.06 E-value=3.8e-06 Score=70.56 Aligned_cols=138 Identities=16% Similarity=0.180 Sum_probs=97.0
Q ss_pred CCCCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCC
Q 043587 93 SLDEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLT 167 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 167 (285)
+.+..+|.+....|.... +...+...+.|+.+.+..|.+..... ......|..+++|++|||. .|.+.
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~-----DNtft 226 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLR-----DNTFT 226 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecc-----cchhh
Confidence 457788888888887665 44566667788888888887433222 2345668889999999998 77644
Q ss_pred Cc----ccccccccCCCceEeccccccc-----ccchhhh-cCCCccEEecCCCCCcCc----CcccccccCCCceeecC
Q 043587 168 PE----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLC-ELYNLETLDISGCFDLEE----LPKGIGKLVNMKHLLNS 233 (285)
Q Consensus 168 ~~----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~-~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~l~ 233 (285)
.. +...++.+++|+.|++++|.++ .+.+.+. ..++|++|.+.+|.+... +...+...+.|+.|+++
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 33 4456777888999999998866 2223332 468899999999874332 33355667889999999
Q ss_pred CCCC
Q 043587 234 RTSS 237 (285)
Q Consensus 234 ~~~~ 237 (285)
+|.+
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 9865
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=3.7e-05 Score=67.30 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=71.9
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccc-cccc
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQ-HIEK 192 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~-~l~~ 192 (285)
.+..+.+++.|++++|. ...+ |. --.+|+.|.++ +|.....+|..+ ..+|++|++++| .+..
T Consensus 47 r~~~~~~l~~L~Is~c~------L~sL-P~---LP~sLtsL~Ls-----nc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 47 QIEEARASGRLYIKDCD------IESL-PV---LPNELTEITIE-----NCNNLTTLPGSI--PEGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHHhcCCCEEEeCCCC------Cccc-CC---CCCCCcEEEcc-----CCCCcccCCchh--hhhhhheEccCcccccc
Confidence 34557888999998886 4443 21 12358888888 655456667554 357899999888 5777
Q ss_pred cchhhhcCCCccEEecCCCC--CcCcCccccccc------------------CCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 193 LPETLCELYNLETLDISGCF--DLEELPKGIGKL------------------VNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 193 lp~~i~~l~~L~~L~l~~~~--~~~~lp~~l~~l------------------~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
+|+. |+.|++..+. .++.+|.++..| ++|++|++++|... .+|..+. .+|+
T Consensus 110 LP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk 180 (426)
T PRK15386 110 LPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQ 180 (426)
T ss_pred cccc------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCc
Confidence 7754 4445554432 255666655433 25777777777544 3443333 3566
Q ss_pred ccccc
Q 043587 253 TLGEF 257 (285)
Q Consensus 253 ~L~l~ 257 (285)
.|.++
T Consensus 181 ~L~ls 185 (426)
T PRK15386 181 SITLH 185 (426)
T ss_pred EEEec
Confidence 66654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=2.5e-06 Score=62.51 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=26.4
Q ss_pred CCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587 179 HLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT 235 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 235 (285)
.+..|++++|.+..+|..+..++.|+.|+++.|. +...|.-+..|.+|-+|+..+|
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 4444444444444444444444444444444444 4444444444444444444444
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=2.2e-05 Score=68.63 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=78.0
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..++++|.++.+.+..+|. -..+|++|.+.++.. ... .|+.+ ..+|+.|+++ +|.....+|..
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~n-----Lts-LP~~L--P~nLe~L~Ls-----~Cs~L~sLP~s- 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNN-----LTT-LPGSI--PEGLEKLTVC-----HCPEISGLPES- 113 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCC-----ccc-CCchh--hhhhhheEcc-----Ccccccccccc-
Confidence 4678899999887776662 234699999988652 222 23323 2579999999 77436666654
Q ss_pred cccCCCceEeccccc---ccccchhhhcC------------------CCccEEecCCCCCcCcCcccccccCCCceeecC
Q 043587 175 EKLVHLRYLSLSFQH---IEKLPETLCEL------------------YNLETLDISGCFDLEELPKGIGKLVNMKHLLNS 233 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~---l~~lp~~i~~l------------------~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 233 (285)
|+.|++..+. +..+|+++..| .+|++|++++|. ...+|..+- .+|++|.++
T Consensus 114 -----Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~-~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 114 -----VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS-NIILPEKLP--ESLQSITLH 185 (426)
T ss_pred -----cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC-cccCccccc--ccCcEEEec
Confidence 5666666554 55677666544 379999999998 445565432 489999987
Q ss_pred CC
Q 043587 234 RT 235 (285)
Q Consensus 234 ~~ 235 (285)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=6.1e-07 Score=82.03 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=102.2
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
.+..+...+...|....+..++.-++.|+.|++++|+ ..++ ..+..++.|+.|||+ +|+ ...+|.-
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk------~~~v--~~Lr~l~~LkhLDls-----yN~-L~~vp~l 227 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK------FTKV--DNLRRLPKLKHLDLS-----YNC-LRHVPQL 227 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh------hhhh--HHHHhcccccccccc-----cch-hcccccc
Confidence 4667888888888887777888899999999999998 5453 258899999999999 888 6666632
Q ss_pred ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCC
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSV 238 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~ 238 (285)
=..-.+|..|.+++|.++.+ .++.+|.+|+.||++.|- +.... .-++.|..|+.|.+.+|++.
T Consensus 228 ~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 228 SMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 11123499999999999988 579999999999999986 44332 23567888999999999765
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.82 E-value=5.9e-06 Score=60.56 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=86.0
Q ss_pred ceeEEEEEecCCccc---ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 97 KVRHLMLIIGEGAIF---PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 97 ~l~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
....+.++.+++..+ +..+....+|...++++|. .+++++..-..++.++.|+++ .|. +..+|..
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~------fk~fp~kft~kf~t~t~lNl~-----~ne-isdvPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG------FKKFPKKFTIKFPTATTLNLA-----NNE-ISDVPEE 95 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch------hhhCCHHHhhccchhhhhhcc-----hhh-hhhchHH
Confidence 444556666655433 3344555678888999998 777666655667789999998 888 7788888
Q ss_pred ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccc
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKG 220 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 220 (285)
+..++.|+.|+++.|.+...|..+.+|.+|-.|+..++. ...+|-.
T Consensus 96 ~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 889999999999999999999988889999999998887 6667655
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=1.3e-05 Score=66.30 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=81.6
Q ss_pred ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccc--ccc
Q 043587 117 RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE--KLP 194 (285)
Q Consensus 117 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~--~lp 194 (285)
.++.++.+++.+|..+.|+-+ ...+.+++.|++|+++ .|++...+..---...+|++|-|.++.+. ...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI----~~ile~lP~l~~LNls-----~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEI----GAILEQLPALTTLNLS-----CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred HhhhhhhhhcccchhccHHHH----HHHHhcCccceEeecc-----CCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence 456677777777763332222 2335667777777777 55533322111123556777766666533 344
Q ss_pred hhhhcCCCccEEecCCCCCc---------CcC----------c------ccc----cccCCCceeecCCCCCCccc-CCC
Q 043587 195 ETLCELYNLETLDISGCFDL---------EEL----------P------KGI----GKLVNMKHLLNSRTSSVRYM-PVG 244 (285)
Q Consensus 195 ~~i~~l~~L~~L~l~~~~~~---------~~l----------p------~~l----~~l~~L~~L~l~~~~~~~~~-p~~ 244 (285)
.....++.++.|.++.|... +.. | ..+ ..+|++..+.+..|++...- -.+
T Consensus 140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~ 219 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG 219 (418)
T ss_pred hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc
Confidence 44555666666666655210 000 0 000 02344445555555433211 123
Q ss_pred CCCCCcCCcccccc----ccCCccccccCCcCCCceecccC
Q 043587 245 IGRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 245 ~~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
...++.+-.|.+.. +++.++.|.++++|+.|.+.+++
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 44455555566554 67778888888888887776654
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.43 E-value=6.9e-05 Score=60.80 Aligned_cols=84 Identities=25% Similarity=0.220 Sum_probs=39.3
Q ss_pred ccccCCCceEecccc--ccc-ccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccC---CCC
Q 043587 174 IEKLVHLRYLSLSFQ--HIE-KLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMP---VGI 245 (285)
Q Consensus 174 i~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p---~~~ 245 (285)
+-.+++|++|.++.| ++. .++....++++|++|++++|+ +..+. ..+..+.+|..|++.+|..+...- ..|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 334556666666666 222 333333344666666666665 33211 123345556666666654433110 123
Q ss_pred CCCCcCCcccccc
Q 043587 246 GRLTGLRTLGEFT 258 (285)
Q Consensus 246 ~~l~~L~~L~l~~ 258 (285)
.-+++|..|+-..
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 4455555555443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00016 Score=56.63 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=27.6
Q ss_pred ccccCCCceEecccccccccchhhh-cCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCC
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLC-ELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSS 237 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~ 237 (285)
+..++.|.+|.+.+|.|+.+.+.+. .+++|.+|.+.+|. +..+- ..+..+|+|++|.+-+|+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCch
Confidence 3344445555555555554433333 23345555555544 32221 1233444555555544433
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00025 Score=55.51 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=56.7
Q ss_pred ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc-ccCCCceEecccccccccch--
Q 043587 119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE-KLVHLRYLSLSFQHIEKLPE-- 195 (285)
Q Consensus 119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~-~l~~L~~L~l~~~~l~~lp~-- 195 (285)
.....+++..|. .... . .|..++.|..|.++ .|. +..+...+. .+++|..|.+.+|++.++.+
T Consensus 42 d~~d~iDLtdNd------l~~l-~-~lp~l~rL~tLll~-----nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDND------LRKL-D-NLPHLPRLHTLLLN-----NNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred cccceecccccc------hhhc-c-cCCCccccceEEec-----CCc-ceeeccchhhhccccceEEecCcchhhhhhcc
Confidence 345566666665 3331 2 25666677777776 666 333333333 35567777777777665432
Q ss_pred hhhcCCCccEEecCCCCCcCcCcc----cccccCCCceeecC
Q 043587 196 TLCELYNLETLDISGCFDLEELPK----GIGKLVNMKHLLNS 233 (285)
Q Consensus 196 ~i~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~ 233 (285)
.+..++.|++|.+-+|. .+..+. -+..+|+|+.||+.
T Consensus 108 pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehh
Confidence 34456677777776665 333221 24566777777765
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=1.4e-05 Score=65.45 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=29.1
Q ss_pred ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCCCCcc
Q 043587 176 KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTSSVRY 240 (285)
Q Consensus 176 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~ 240 (285)
+++.|++|.|+-|.|+.+. .+..+++|+.|+|+.|. +..+.+ -+.++|+|+.|.+..|+..+.
T Consensus 39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3444555555555544442 24444555555555544 333321 234455555555555544443
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00011 Score=60.25 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=73.2
Q ss_pred hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccch
Q 043587 116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE 195 (285)
Q Consensus 116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~ 195 (285)
.++.+.+.|+.-++. ..+| .....|+.|++|.|+ -|.|.. + +.+..+.+|+.|.|+.|.|..+-+
T Consensus 16 sdl~~vkKLNcwg~~------L~DI--sic~kMp~lEVLsLS-----vNkIss-L-~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCG------LDDI--SICEKMPLLEVLSLS-----VNKISS-L-APLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred hHHHHhhhhcccCCC------ccHH--HHHHhcccceeEEee-----cccccc-c-hhHHHHHHHHHHHHHhcccccHHH
Confidence 456677777777776 4453 236789999999998 777443 3 347778889999999998886643
Q ss_pred --hhhcCCCccEEecCCCCCcCcCcc-----cccccCCCceeec
Q 043587 196 --TLCELYNLETLDISGCFDLEELPK-----GIGKLVNMKHLLN 232 (285)
Q Consensus 196 --~i~~l~~L~~L~l~~~~~~~~lp~-----~l~~l~~L~~L~l 232 (285)
-+.++++|++|.|..|.-.+.-+. -+..||+|+.||-
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 456889999999988875555443 2456788888863
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.81 E-value=0.0006 Score=33.49 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=9.4
Q ss_pred CceEecccccccccchhh
Q 043587 180 LRYLSLSFQHIEKLPETL 197 (285)
Q Consensus 180 L~~L~l~~~~l~~lp~~i 197 (285)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.0014 Score=54.50 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=18.9
Q ss_pred CCceeEEEEEecCCcc---cccchhccccccEEeecCCC
Q 043587 95 DEKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGR 130 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~ 130 (285)
...++.+++.++.+.. +...+.+++.|++|+++.|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 3445555555555444 23344455666666666655
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.60 E-value=0.0017 Score=53.36 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=75.4
Q ss_pred ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc-ccc-------------ccc
Q 043587 112 PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP-RNI-------------EKL 177 (285)
Q Consensus 112 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p-~~i-------------~~l 177 (285)
.+++.+|++|+..+++.|.... -....+.+.+++.+.|..|.++ +|. .|.+. .-| ..-
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~--~~~e~L~d~is~~t~l~HL~l~-----NnG-lGp~aG~rigkal~~la~nKKaa~k 156 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGS--EFPEELGDLISSSTDLVHLKLN-----NNG-LGPIAGGRIGKALFHLAYNKKAADK 156 (388)
T ss_pred HHHHhcCCcceeeeccccccCc--ccchHHHHHHhcCCCceeEEee-----cCC-CCccchhHHHHHHHHHHHHhhhccC
Confidence 3456677777777777776211 0112234446667777777777 554 22211 111 234
Q ss_pred CCCceEecccccccccchh-----hhcCCCccEEecCCCCCcCcCcc--------cccccCCCceeecCCCCCCcc----
Q 043587 178 VHLRYLSLSFQHIEKLPET-----LCELYNLETLDISGCFDLEELPK--------GIGKLVNMKHLLNSRTSSVRY---- 240 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~~-----i~~l~~L~~L~l~~~~~~~~lp~--------~l~~l~~L~~L~l~~~~~~~~---- 240 (285)
+.|++.....|++...|.. +..-.+|+++.+..|. ++ |. ++..+.+|+.|++.+|.++..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 5677777777776655432 2223467777777765 22 33 233556788888887765432
Q ss_pred cCCCCCCCCcCCcccccc
Q 043587 241 MPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 241 ~p~~~~~l~~L~~L~l~~ 258 (285)
+.......+.|++|.+..
T Consensus 234 La~al~~W~~lrEL~lnD 251 (388)
T COG5238 234 LADALCEWNLLRELRLND 251 (388)
T ss_pred HHHHhcccchhhhccccc
Confidence 122334445567776655
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0022 Score=52.22 Aligned_cols=110 Identities=20% Similarity=0.125 Sum_probs=75.6
Q ss_pred ccccccccCCCceEecccccccccchhhhcCCCccEEecCCC--CCcCcCcccccccCCCceeecCCCCCCcccCCC---
Q 043587 170 IPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGC--FDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG--- 244 (285)
Q Consensus 170 ~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~--- 244 (285)
+....-.+..|+.|++.+..++.+. .+..|++|+.|.++.| .....++--...+|+|++|++++|++.- ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccch
Confidence 3333445667788888888776553 4567899999999999 4455565555677999999999997652 333
Q ss_pred CCCCCcCCcccccc------ccCCccccccCCcCCCceecccCC
Q 043587 245 IGRLTGLRTLGEFT------KACRLESLKNLEHLQICGIRRLGY 282 (285)
Q Consensus 245 ~~~l~~L~~L~l~~------~~~~~~~l~~l~~L~~L~i~~~~~ 282 (285)
...+.+|..|+++. .......+.-+++|..|+-..+.+
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 45666777888777 222333456677888877666554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.10 E-value=0.0094 Score=43.69 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=42.6
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL 193 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l 193 (285)
.|.++++|+.+.+... ...+....|.++++|+.+.+. .+ +...-...+..+..++++.+.. .+..+
T Consensus 7 ~F~~~~~l~~i~~~~~-------~~~I~~~~F~~~~~l~~i~~~-----~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i 72 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-------IKKIGENAFSNCTSLKSINFP-----NN-LTSIGDNAFSNCKSLESITFPN-NLKSI 72 (129)
T ss_dssp TTTT-TT--EEEETST---------EE-TTTTTT-TT-SEEEES-----ST-TSCE-TTTTTT-TT-EEEEETS-TT-EE
T ss_pred HHhCCCCCCEEEECCC-------eeEeChhhccccccccccccc-----cc-ccccceeeeecccccccccccc-ccccc
Confidence 4555666666666532 333444456666666666665 32 1222223455555666666644 44444
Q ss_pred ch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCC
Q 043587 194 PE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSR 234 (285)
Q Consensus 194 p~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~ 234 (285)
+. .+...++|+.+.+..+ +..++. .+.+. +|+.+.+..
T Consensus 73 ~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 43 3334666666666543 333322 34444 566665543
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.96 E-value=0.00017 Score=57.77 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=70.1
Q ss_pred HHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccc
Q 043587 144 LFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGK 223 (285)
Q Consensus 144 ~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~ 223 (285)
.+..++..++||++ .|+ .-.+...++.+..|..|+++.+.+..+|...+++..++.+++.+|. ....|.+.++
T Consensus 37 ei~~~kr~tvld~~-----s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k 109 (326)
T KOG0473|consen 37 EIASFKRVTVLDLS-----SNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKK 109 (326)
T ss_pred hhhccceeeeehhh-----hhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccc
Confidence 35667778888888 666 4445566777778888888888888888888888888888888776 7788888888
Q ss_pred cCCCceeecCCCCCCccc
Q 043587 224 LVNMKHLLNSRTSSVRYM 241 (285)
Q Consensus 224 l~~L~~L~l~~~~~~~~~ 241 (285)
++++++++.-.+.+...+
T Consensus 110 ~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred cCCcchhhhccCcchHHH
Confidence 888888888877655443
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.86 E-value=0.0011 Score=57.44 Aligned_cols=183 Identities=16% Similarity=0.106 Sum_probs=90.7
Q ss_pred CCCceeEEEEEecCCcc---cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc-
Q 043587 94 LDEKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE- 169 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~- 169 (285)
..+++.+|.+.+...-. ....-..+++|+.|++..+.. ++...+...-.++++|.+|+++ +|.-+..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~----iT~~~Lk~la~gC~kL~~lNlS-----wc~qi~~~ 232 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS----ITDVSLKYLAEGCRKLKYLNLS-----WCPQISGN 232 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch----hHHHHHHHHHHhhhhHHHhhhc-----cCchhhcC
Confidence 45556666555543211 223334667777777777542 3444444445678888888888 4432211
Q ss_pred -ccccccccCCCceEeccccc---------------------------cccc--chhhhcCCCccEEecCCCCCcCcCcc
Q 043587 170 -IPRNIEKLVHLRYLSLSFQH---------------------------IEKL--PETLCELYNLETLDISGCFDLEELPK 219 (285)
Q Consensus 170 -~p~~i~~l~~L~~L~l~~~~---------------------------l~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~ 219 (285)
+-.-...+..++.+.++||. ++.. -..-.....||+|+.++|...+..+-
T Consensus 233 gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 233 GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL 312 (483)
T ss_pred cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence 11111122223333222221 1110 00011345677777777765444331
Q ss_pred -cc-cccCCCceeecCCCCCCcccCC-CC-CCCCcCCcccccc-----ccCCccccccCCcCCCceecccCCCCC
Q 043587 220 -GI-GKLVNMKHLLNSRTSSVRYMPV-GI-GRLTGLRTLGEFT-----KACRLESLKNLEHLQICGIRRLGYVSD 285 (285)
Q Consensus 220 -~l-~~l~~L~~L~l~~~~~~~~~p~-~~-~~l~~L~~L~l~~-----~~~~~~~l~~l~~L~~L~i~~~~~~~~ 285 (285)
.+ .+.++|+.|.+..|+..+.+-. .+ .++..|+.+++.. .......=.+.+.||+|.++.|+-++|
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 12 3557788888888765443221 12 3556677776665 111122224556677777776665543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0035 Score=30.72 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=9.4
Q ss_pred ccEEecCCCCCcCcCccccc
Q 043587 203 LETLDISGCFDLEELPKGIG 222 (285)
Q Consensus 203 L~~L~l~~~~~~~~lp~~l~ 222 (285)
|++|++++|+ ++.+|++++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 4555555554 445554443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.44 E-value=0.0095 Score=27.11 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=4.8
Q ss_pred CceEeccccccccc
Q 043587 180 LRYLSLSFQHIEKL 193 (285)
Q Consensus 180 L~~L~l~~~~l~~l 193 (285)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.39 E-value=0.023 Score=41.57 Aligned_cols=105 Identities=10% Similarity=0.217 Sum_probs=58.9
Q ss_pred HHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc
Q 043587 142 EELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK 219 (285)
Q Consensus 142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~ 219 (285)
..+|.++.+|+.+.+. . . ...+ ...+..+.+|+.+.+..+ +..++. .+.+..+|+.+.+.+ . ...++.
T Consensus 5 ~~~F~~~~~l~~i~~~-----~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~ 74 (129)
T PF13306_consen 5 NNAFYNCSNLESITFP-----N-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGD 74 (129)
T ss_dssp TTTTTT-TT--EEEET-----S-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-T
T ss_pred HHHHhCCCCCCEEEEC-----C-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccc
Confidence 3457788889999886 4 3 3344 355777888999999774 777765 455676899999976 2 444443
Q ss_pred -cccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 220 -GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 220 -~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
.+..+++|+.+.+..+ +...-+..+.++ .|+.+.+..
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 4566889999998665 432334556776 777776543
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.07 E-value=0.01 Score=53.81 Aligned_cols=61 Identities=26% Similarity=0.276 Sum_probs=27.4
Q ss_pred cCCCceEeccccc-cccc-chhhh-cCCCccEEecCCCCCcCc--CcccccccCCCceeecCCCCC
Q 043587 177 LVHLRYLSLSFQH-IEKL-PETLC-ELYNLETLDISGCFDLEE--LPKGIGKLVNMKHLLNSRTSS 237 (285)
Q Consensus 177 l~~L~~L~l~~~~-l~~l-p~~i~-~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L~l~~~~~ 237 (285)
+.+|+.|+++++. ++.. -..+. .+++|+.|.+.+|..++. +-.....++.|++|+++.|..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555566666555 3311 11222 245566666555542111 111223445566666665543
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.68 E-value=0.014 Score=50.87 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=64.3
Q ss_pred hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-ccccc-ccCCCceEeccccccc--
Q 043587 116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIE-KLVHLRYLSLSFQHIE-- 191 (285)
Q Consensus 116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~-~l~~L~~L~l~~~~l~-- 191 (285)
..+..|+.|..+++.. +........-.+..+|++|.++ +|+..+.. ...++ ++++|+.+++.++...
T Consensus 291 ~~c~~lq~l~~s~~t~----~~d~~l~aLg~~~~~L~~l~l~-----~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTD----ITDEVLWALGQHCHNLQVLELS-----GCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhhhHhhhhcccCCCC----CchHHHHHHhcCCCceEEEecc-----ccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 4555666666655541 2333223323455667777666 55532221 11122 4556666666665522
Q ss_pred -ccchhhhcCCCccEEecCCCCCcCcC-----cccccccCCCceeecCCCCCCcc-cCCCCCCCCcCCcccccc
Q 043587 192 -KLPETLCELYNLETLDISGCFDLEEL-----PKGIGKLVNMKHLLNSRTSSVRY-MPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 192 -~lp~~i~~l~~L~~L~l~~~~~~~~l-----p~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~ 258 (285)
.+-..-.+.+.||.|.++.|..++.. ...-..+..|..+.+++|+.... .-.....+++|+.+++++
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 12222234566666666666543332 22223445566666666654331 223345555666655555
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.52 E-value=0.051 Score=45.01 Aligned_cols=157 Identities=12% Similarity=-0.012 Sum_probs=99.6
Q ss_pred CCCceeEEEEEecCCcc-c----ccchhccccccEEeecCCCCCCCCchhhHHHHH---------HhcCCccceeeeccc
Q 043587 94 LDEKVRHLMLIIGEGAI-F----PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEEL---------FRELTSLRALDFCES 159 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-~----~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~---------~~~~~~L~~L~L~~~ 159 (285)
..+.++.+.++.+.... . ..-++.-+.|..|.+++|.... +.+.-...+ ...-+.|++....
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp--~aG~rigkal~~la~nKKaa~kp~Le~vicg-- 165 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP--IAGGRIGKALFHLAYNKKAADKPKLEVVICG-- 165 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc--cchhHHHHHHHHHHHHhhhccCCCceEEEec--
Confidence 45788899999887654 2 3345666789999999997211 111111211 2345779999988
Q ss_pred ccccccCCCccc-----ccccccCCCceEeccccccccc------chhhhcCCCccEEecCCCCCcCc----Cccccccc
Q 043587 160 YHSRSSLTPEIP-----RNIEKLVHLRYLSLSFQHIEKL------PETLCELYNLETLDISGCFDLEE----LPKGIGKL 224 (285)
Q Consensus 160 ~~~~~~~~~~~p-----~~i~~l~~L~~L~l~~~~l~~l------p~~i~~l~~L~~L~l~~~~~~~~----lp~~l~~l 224 (285)
+|. ....| ..+..-..|+.+.+..|.|..- -..+..+++|++|++..|.+... +...+..+
T Consensus 166 ---rNR-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 166 ---RNR-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred ---cch-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 777 33322 2233345899999999997711 12345678999999999974332 22344566
Q ss_pred CCCceeecCCCCCCcccC----CCC--CCCCcCCcccccc
Q 043587 225 VNMKHLLNSRTSSVRYMP----VGI--GRLTGLRTLGEFT 258 (285)
Q Consensus 225 ~~L~~L~l~~~~~~~~~p----~~~--~~l~~L~~L~l~~ 258 (285)
+.|+.|.+.+|-+...-. ..| ...++|+.|.+.+
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred chhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 779999999995543211 112 2356778887776
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.71 E-value=0.058 Score=27.39 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=11.1
Q ss_pred CCCceEecccccccccchh
Q 043587 178 VHLRYLSLSFQHIEKLPET 196 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~~ 196 (285)
.+|++|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.71 E-value=0.058 Score=27.39 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=11.1
Q ss_pred CCCceEecccccccccchh
Q 043587 178 VHLRYLSLSFQHIEKLPET 196 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~~ 196 (285)
.+|++|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.39 E-value=0.026 Score=51.18 Aligned_cols=138 Identities=23% Similarity=0.175 Sum_probs=83.2
Q ss_pred hHHHHHHhcCCccceeeecccccccccCCCc--ccccccccCCCceEecccc-c-cccc----chhhhcCCCccEEecCC
Q 043587 139 EILEELFRELTSLRALDFCESYHSRSSLTPE--IPRNIEKLVHLRYLSLSFQ-H-IEKL----PETLCELYNLETLDISG 210 (285)
Q Consensus 139 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~p~~i~~l~~L~~L~l~~~-~-l~~l----p~~i~~l~~L~~L~l~~ 210 (285)
.+........++|+.|.+. ++..... +-.....++.|+.|+++++ . +... +.....+.+|+.|++++
T Consensus 178 ~~~~~l~~~~~~L~~l~l~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 178 KILLRLLSSCPLLKRLSLS-----GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred HHHHHHHhhCchhhHhhhc-----ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 3334434567899999988 6654444 3345567889999999873 2 2211 12334568899999999
Q ss_pred CCCcCcC-ccccc-ccCCCceeecCCCCC-Ccc-cCCCCCCCCcCCcccccc-----ccCCccccccCCcCCCceecccC
Q 043587 211 CFDLEEL-PKGIG-KLVNMKHLLNSRTSS-VRY-MPVGIGRLTGLRTLGEFT-----KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 211 ~~~~~~l-p~~l~-~l~~L~~L~l~~~~~-~~~-~p~~~~~l~~L~~L~l~~-----~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+..++.. -..+. .+++|++|.+..|.. +.. +-.....+++|++|++++ .........++++|+.|.+..+.
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 8743322 22232 378899999887853 221 212345678899999887 11122234455666665554443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=0.021 Score=44.96 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCc-cccc-ccCCCceeecCCCCCCcc-cCCCCCCCCcCCcc
Q 043587 179 HLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELP-KGIG-KLVNMKHLLNSRTSSVRY-MPVGIGRLTGLRTL 254 (285)
Q Consensus 179 ~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp-~~l~-~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L 254 (285)
.++.++-+++.|... -+.+..++.++.|.+.+|......- ..++ -.++|+.|++++|+..+. --..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 367777777776533 3567788899999999998665431 1232 346899999999865432 12346677778887
Q ss_pred cccc
Q 043587 255 GEFT 258 (285)
Q Consensus 255 ~l~~ 258 (285)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7776
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.0087 Score=48.25 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=73.6
Q ss_pred ccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL 251 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 251 (285)
..+.....-..||++.|++..+-..+..++.|+.|+++.+. +..+|..++++..++++++..|+.. ..|.+++.++.+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 34566778889999999988888888889999999999998 8999999999999999998887555 889999999999
Q ss_pred Ccccccc
Q 043587 252 RTLGEFT 258 (285)
Q Consensus 252 ~~L~l~~ 258 (285)
+.++.-.
T Consensus 114 k~~e~k~ 120 (326)
T KOG0473|consen 114 KKNEQKK 120 (326)
T ss_pred chhhhcc
Confidence 9887655
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.30 E-value=0.23 Score=25.20 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=14.4
Q ss_pred CCcCCCceecccCCCCC
Q 043587 269 LEHLQICGIRRLGYVSD 285 (285)
Q Consensus 269 l~~L~~L~i~~~~~~~~ 285 (285)
+++|+.|++++|.+|.|
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36789999999999876
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.05 E-value=0.43 Score=37.83 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=39.6
Q ss_pred ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-ccccc-ccCCCceEeccccc-cccc-c
Q 043587 119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIE-KLVHLRYLSLSFQH-IEKL-P 194 (285)
Q Consensus 119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~-~l~~L~~L~l~~~~-l~~l-p 194 (285)
..++.++.++.. +... --+.+.+++.++.|.+. .|...+.. -+-++ -.++|+.|++++|. |++- .
T Consensus 101 ~~IeaVDAsds~-----I~~e-Gle~L~~l~~i~~l~l~-----~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 101 VKIEAVDASDSS-----IMYE-GLEHLRDLRSIKSLSLA-----NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred ceEEEEecCCch-----HHHH-HHHHHhccchhhhheec-----cccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 446666666665 2222 22334555556666665 44433321 11122 24556666666665 5522 2
Q ss_pred hhhhcCCCccEEecCC
Q 043587 195 ETLCELYNLETLDISG 210 (285)
Q Consensus 195 ~~i~~l~~L~~L~l~~ 210 (285)
..+.++++|+.|.+++
T Consensus 170 ~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHhhhhHHHHhcC
Confidence 3455566666665554
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.21 E-value=0.52 Score=23.96 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=10.5
Q ss_pred CCceEecccccccccch
Q 043587 179 HLRYLSLSFQHIEKLPE 195 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~ 195 (285)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.65 E-value=0.029 Score=50.95 Aligned_cols=34 Identities=18% Similarity=0.035 Sum_probs=15.9
Q ss_pred CCCceeecCCCCCCcc----cCCCCCCCCcCCcccccc
Q 043587 225 VNMKHLLNSRTSSVRY----MPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 225 ~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~ 258 (285)
+.++++++..|.+... +...+..+++++++.++.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 4455555555544432 122334444555555544
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.27 E-value=1.9 Score=21.91 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=7.5
Q ss_pred CCceEeccccccccc
Q 043587 179 HLRYLSLSFQHIEKL 193 (285)
Q Consensus 179 ~L~~L~l~~~~l~~l 193 (285)
+|++|+++.|.|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 455555555554433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.70 E-value=1.7 Score=21.32 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=6.0
Q ss_pred CCCceEeccccccc
Q 043587 178 VHLRYLSLSFQHIE 191 (285)
Q Consensus 178 ~~L~~L~l~~~~l~ 191 (285)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555543
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.80 E-value=5.5 Score=20.45 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=7.5
Q ss_pred CCceEeccccccc
Q 043587 179 HLRYLSLSFQHIE 191 (285)
Q Consensus 179 ~L~~L~l~~~~l~ 191 (285)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=55.83 E-value=0.64 Score=42.41 Aligned_cols=177 Identities=22% Similarity=0.192 Sum_probs=102.5
Q ss_pred eeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcC-CccceeeecccccccccCCCc--
Q 043587 98 VRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFREL-TSLRALDFCESYHSRSSLTPE-- 169 (285)
Q Consensus 98 l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~-- 169 (285)
+..+.+..+.+.. +...+.....|..|++..|.... .....+-..+... +.+++|++. .|.+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~--~g~~~l~~~l~~~~~~l~~L~l~-----~c~l~~~g~ 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD--EGARLLCEGLRLPQCLLQTLELV-----SCSLTSEGA 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc--HhHHHHHhhcccchHHHHHHHhh-----cccccccch
Confidence 5555566555443 44566677888888888887320 0111112222332 557778887 5553332
Q ss_pred --ccccccccCCCceEeccccccc-----ccchhhh----cCCCccEEecCCCCCcCc----CcccccccCC-CceeecC
Q 043587 170 --IPRNIEKLVHLRYLSLSFQHIE-----KLPETLC----ELYNLETLDISGCFDLEE----LPKGIGKLVN-MKHLLNS 233 (285)
Q Consensus 170 --~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~----~l~~L~~L~l~~~~~~~~----lp~~l~~l~~-L~~L~l~ 233 (285)
+.+.+....+++.++++.|.+. .++..+. ...++++|++.+|..... +...+...++ ++.|++.
T Consensus 162 ~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 162 APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLA 241 (478)
T ss_pred HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHH
Confidence 4556666778888888888753 2223333 467788899988873311 1123334455 6678888
Q ss_pred CCCCCcc----cCCCCCCC-CcCCcccccc-------ccCCccccccCCcCCCceecccC
Q 043587 234 RTSSVRY----MPVGIGRL-TGLRTLGEFT-------KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 234 ~~~~~~~----~p~~~~~l-~~L~~L~l~~-------~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
.|.+-.. +...+..+ ..++++++.. .......+..+++++.|.++...
T Consensus 242 ~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 242 SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 8755422 23345555 5778888776 23344445566677777766543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.88 E-value=9 Score=35.24 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=27.8
Q ss_pred cCCCceEeccccccccc---chhhhcCCCccEEecCCCCCcCcCccccccc--CCCceeecCCCCCCc
Q 043587 177 LVHLRYLSLSFQHIEKL---PETLCELYNLETLDISGCFDLEELPKGIGKL--VNMKHLLNSRTSSVR 239 (285)
Q Consensus 177 l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l--~~L~~L~l~~~~~~~ 239 (285)
.+.+..+++++|++..+ ..--..-++|.+|+|++|......-.++.++ ..|++|.+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 44455555555554322 1111234556666666652111111122222 245666666665554
No 88
>PF14162 YozD: YozD-like protein
Probab=50.07 E-value=20 Score=21.46 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhhCCCCccc
Q 043587 27 EMETIGEEYFGILAPRSFFQEF 48 (285)
Q Consensus 27 ~~~~~~~~~~~~Li~~~li~~~ 48 (285)
..+++|+-++.+|+.||++...
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcH
Confidence 4678999999999999998644
No 89
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=49.45 E-value=2.7 Score=29.30 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=22.5
Q ss_pred ccCCchhhhccc----cc---cCCCCCHHHHHHHHHHHHhhCCCCcccccc
Q 043587 8 YNDLPSKLKRCY----LS---AEEDEEMETIGEEYFGILAPRSFFQEFEKS 51 (285)
Q Consensus 8 y~~L~~~lk~cf----~~---~~~~~~~~~~~~~~~~~Li~~~li~~~~~~ 51 (285)
|+.||..+|.|| +. ..-+.-..+.|+.++..+++.|++.+....
T Consensus 21 FeslP~emq~Alet~~ld~vnkVl~~M~veeAE~~v~~~~esGi~~~~~~~ 71 (99)
T PF08564_consen 21 FESLPPEMQKALETGDLDEVNKVLGKMPVEEAEYHVERCIESGIWSPEAGI 71 (99)
T ss_dssp HHHS-TT------------HHHHHT--SSSHHHHHHHHHHHTTSS--TT--
T ss_pred HHHCCHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhCCccccccCc
Confidence 788999999999 11 111222337788999999999999876543
No 90
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=24.51 E-value=73 Score=21.22 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=26.4
Q ss_pred hhhccc--------cccCCCCCHHHHHHHHHHHHhhCCCCcccccc
Q 043587 14 KLKRCY--------LSAEEDEEMETIGEEYFGILAPRSFFQEFEKS 51 (285)
Q Consensus 14 ~lk~cf--------~~~~~~~~~~~~~~~~~~~Li~~~li~~~~~~ 51 (285)
.-+.|| +.......-...|-.+.+.|.+.|+|+.+...
T Consensus 24 ~y~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 24 TYTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred EcCcccChHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 345788 22233334456788899999999999988654
No 91
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=23.20 E-value=1.2e+02 Score=18.63 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCCCCccccccCCCceeeEecC
Q 043587 32 GEEYFGILAPRSFFQEFEKSYDNRIIKCKMH 62 (285)
Q Consensus 32 ~~~~~~~Li~~~li~~~~~~~~~~~~~~~~h 62 (285)
....++.|+..|+++......+++...+.+.
T Consensus 35 vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT 65 (68)
T PF13463_consen 35 VSRIIKKLEEKGLVEKERDPHDKRSKRYRLT 65 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCTTSEEEEE-
T ss_pred HHHHHHHHHHCCCEEecCCCCcCCeeEEEeC
Confidence 4466889999999988888878776666654
No 92
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=21.23 E-value=86 Score=21.19 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=26.3
Q ss_pred hhccc--------cccCCCCCHHHHHHHHHHHHhhCCCCcccccc
Q 043587 15 LKRCY--------LSAEEDEEMETIGEEYFGILAPRSFFQEFEKS 51 (285)
Q Consensus 15 lk~cf--------~~~~~~~~~~~~~~~~~~~Li~~~li~~~~~~ 51 (285)
-+.|| +.......-.+.|-.+.+.|.+.|+|+.+...
T Consensus 29 y~~cF~GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~gii~HV~~~ 73 (85)
T cd04441 29 YERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEHGIIQHVSNK 73 (85)
T ss_pred cCCEeEchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 35788 22233345567788899999999999887654
Done!