Query 043587
Match_columns 285
No_of_seqs 180 out of 2434
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2E-22 6.8E-27 173.0 13.5 177 94-283 102-290 (328)
2 4fcg_A Uncharacterized protein 99.8 4.1E-21 1.4E-25 164.8 11.0 174 94-279 125-310 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-20 7.9E-25 159.1 9.0 151 96-258 50-206 (313)
4 2o6q_A Variable lymphocyte rec 99.8 4.4E-19 1.5E-23 147.9 13.6 177 93-281 34-216 (270)
5 1ogq_A PGIP-2, polygalacturona 99.8 7.9E-20 2.7E-24 155.7 8.8 175 94-280 74-278 (313)
6 3rgz_A Protein brassinosteroid 99.8 1.4E-19 4.7E-24 172.0 10.7 81 200-280 631-714 (768)
7 1ozn_A Reticulon 4 receptor; N 99.8 4.2E-19 1.4E-23 149.1 12.2 175 95-280 55-235 (285)
8 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-19 8.9E-24 150.4 10.7 176 93-280 29-211 (285)
9 3rgz_A Protein brassinosteroid 99.8 4.1E-19 1.4E-23 168.7 11.7 176 95-281 441-691 (768)
10 3m19_A Variable lymphocyte rec 99.8 1.4E-18 5E-23 143.2 10.7 154 93-258 32-188 (251)
11 3rfs_A Internalin B, repeat mo 99.8 3.6E-18 1.2E-22 142.6 13.0 171 95-280 40-215 (272)
12 3zyi_A Leucine-rich repeat-con 99.8 1.7E-18 5.9E-23 154.7 11.4 108 93-211 72-181 (452)
13 3zyj_A Leucine-rich repeat-con 99.8 2.9E-18 1E-22 152.7 12.8 175 93-279 61-264 (440)
14 2z66_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 149.9 7.7 176 95-281 77-259 (306)
15 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.8E-23 147.4 10.0 178 93-280 25-233 (306)
16 2z62_A TOLL-like receptor 4, v 99.7 1.8E-18 6.3E-23 144.5 7.8 176 94-280 26-234 (276)
17 3m19_A Variable lymphocyte rec 99.7 1E-17 3.5E-22 138.1 11.8 171 97-281 15-190 (251)
18 1p9a_G Platelet glycoprotein I 99.7 6.4E-18 2.2E-22 142.4 10.7 174 93-281 28-206 (290)
19 1p9a_G Platelet glycoprotein I 99.7 1.3E-17 4.5E-22 140.4 12.6 148 96-258 55-204 (290)
20 3zyj_A Leucine-rich repeat-con 99.7 5.7E-18 1.9E-22 150.9 10.8 175 95-281 111-290 (440)
21 2o6q_A Variable lymphocyte rec 99.7 7.4E-18 2.5E-22 140.5 10.6 171 97-280 17-191 (270)
22 3vq2_A TLR4, TOLL-like recepto 99.7 3.6E-18 1.2E-22 158.0 8.7 178 93-281 29-215 (606)
23 2id5_A Lingo-1, leucine rich r 99.7 5.1E-18 1.7E-22 152.6 9.4 178 93-281 29-211 (477)
24 3zyi_A Leucine-rich repeat-con 99.7 9.1E-18 3.1E-22 150.1 11.0 180 95-281 98-301 (452)
25 2z80_A TOLL-like receptor 2, v 99.7 1.2E-18 4.2E-23 150.7 4.1 178 93-281 49-233 (353)
26 1xku_A Decorin; proteoglycan, 99.7 2.9E-17 9.8E-22 140.8 12.3 134 140-280 136-273 (330)
27 1h6u_A Internalin H; cell adhe 99.7 3.3E-17 1.1E-21 139.2 12.6 167 93-280 60-227 (308)
28 2z81_A CD282 antigen, TOLL-lik 99.7 2.8E-18 9.4E-23 156.9 5.8 177 93-280 23-206 (549)
29 3vq2_A TLR4, TOLL-like recepto 99.7 5.1E-18 1.8E-22 156.9 7.6 132 144-280 419-555 (606)
30 1xku_A Decorin; proteoglycan, 99.7 3E-17 1E-21 140.7 11.8 172 94-280 50-250 (330)
31 1h6u_A Internalin H; cell adhe 99.7 3.7E-17 1.3E-21 138.9 12.2 165 95-280 40-205 (308)
32 1h6t_A Internalin B; cell adhe 99.7 3.6E-17 1.2E-21 137.8 12.0 165 95-280 45-210 (291)
33 3v47_A TOLL-like receptor 5B a 99.7 2.3E-17 7.9E-22 147.3 11.3 142 94-245 28-174 (455)
34 4eco_A Uncharacterized protein 99.7 2.5E-18 8.4E-23 160.0 5.2 171 96-280 249-443 (636)
35 2z62_A TOLL-like receptor 4, v 99.7 1.9E-17 6.5E-22 138.3 9.4 153 95-258 51-233 (276)
36 4ecn_A Leucine-rich repeat pro 99.7 8.5E-18 2.9E-22 160.3 8.2 134 111-258 481-628 (876)
37 3t6q_A CD180 antigen; protein- 99.7 2.7E-17 9.1E-22 152.1 11.1 175 95-280 277-486 (606)
38 3o6n_A APL1; leucine-rich repe 99.7 2.6E-17 8.8E-22 144.3 10.1 131 96-237 45-177 (390)
39 3v47_A TOLL-like receptor 5B a 99.7 6.8E-17 2.3E-21 144.3 12.8 128 149-281 275-406 (455)
40 2z63_A TOLL-like receptor 4, v 99.7 1.3E-17 4.4E-22 153.0 7.9 176 93-280 25-210 (570)
41 3rfs_A Internalin B, repeat mo 99.7 4.5E-17 1.5E-21 135.9 10.2 153 93-258 60-214 (272)
42 3oja_B Anopheles plasmodium-re 99.7 2.9E-17 9.8E-22 151.8 9.9 86 95-191 98-184 (597)
43 2ft3_A Biglycan; proteoglycan, 99.7 1.2E-16 4E-21 137.1 13.0 106 93-212 51-158 (332)
44 3o6n_A APL1; leucine-rich repe 99.7 3.7E-17 1.3E-21 143.3 10.0 86 95-191 92-178 (390)
45 4ezg_A Putative uncharacterize 99.7 4.5E-17 1.5E-21 129.4 9.4 147 95-258 43-190 (197)
46 3oja_B Anopheles plasmodium-re 99.7 3.5E-17 1.2E-21 151.2 10.1 173 95-280 74-311 (597)
47 1wwl_A Monocyte differentiatio 99.7 2.3E-17 8E-22 140.3 7.9 172 95-280 120-306 (312)
48 4eco_A Uncharacterized protein 99.7 8.7E-17 3E-21 149.6 12.4 170 97-281 403-598 (636)
49 2ast_B S-phase kinase-associat 99.7 1.1E-17 3.8E-22 143.5 5.9 176 94-280 91-282 (336)
50 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.6E-21 126.5 11.7 152 114-281 39-192 (197)
51 3j0a_A TOLL-like receptor 5; m 99.7 4.6E-17 1.6E-21 156.1 10.7 177 94-280 22-214 (844)
52 2xwt_C Thyrotropin receptor; s 99.7 2.2E-17 7.5E-22 135.1 7.2 152 96-258 31-214 (239)
53 2v9t_B SLIT homolog 2 protein 99.7 3.5E-17 1.2E-21 132.3 8.2 144 102-258 17-161 (220)
54 1ziw_A TOLL-like receptor 3; i 99.7 6.7E-17 2.3E-21 151.4 11.1 174 93-278 22-203 (680)
55 2ast_B S-phase kinase-associat 99.7 6.8E-18 2.3E-22 144.8 3.9 178 96-284 70-261 (336)
56 2z80_A TOLL-like receptor 2, v 99.7 2.4E-17 8.4E-22 142.6 7.3 167 101-281 36-209 (353)
57 4glp_A Monocyte differentiatio 99.7 1.6E-16 5.5E-21 135.0 11.8 173 95-281 116-305 (310)
58 2xwt_C Thyrotropin receptor; s 99.7 5.8E-17 2E-21 132.6 8.2 147 95-258 79-235 (239)
59 1m9s_A Internalin B; cell inva 99.7 1E-16 3.6E-21 147.7 10.8 164 96-280 43-207 (605)
60 2ft3_A Biglycan; proteoglycan, 99.7 5.4E-17 1.8E-21 139.2 8.2 79 179-258 194-273 (332)
61 3e6j_A Variable lymphocyte rec 99.7 1E-16 3.6E-21 130.3 9.4 127 119-258 40-168 (229)
62 1wwl_A Monocyte differentiatio 99.7 1.5E-16 5.1E-21 135.3 10.3 173 94-281 93-285 (312)
63 3t6q_A CD180 antigen; protein- 99.7 6E-17 2.1E-21 149.7 8.3 175 94-280 348-533 (606)
64 2id5_A Lingo-1, leucine rich r 99.7 2.4E-16 8.4E-21 141.6 12.0 177 94-281 126-331 (477)
65 2o6s_A Variable lymphocyte rec 99.7 2.3E-16 7.7E-21 126.3 10.5 160 93-271 25-190 (208)
66 4glp_A Monocyte differentiatio 99.7 8E-17 2.7E-21 136.9 7.7 176 96-281 91-283 (310)
67 4ecn_A Leucine-rich repeat pro 99.7 4E-16 1.4E-20 148.8 13.3 147 120-281 674-838 (876)
68 2v70_A SLIT-2, SLIT homolog 2 99.7 1.7E-16 5.6E-21 128.3 9.0 131 96-237 32-165 (220)
69 1ziw_A TOLL-like receptor 3; i 99.7 1.7E-16 5.9E-21 148.6 9.7 168 100-280 8-181 (680)
70 2o6s_A Variable lymphocyte rec 99.7 2.3E-16 8E-21 126.2 9.0 161 100-278 11-173 (208)
71 2z81_A CD282 antigen, TOLL-lik 99.7 6.2E-17 2.1E-21 147.9 6.3 166 103-281 12-183 (549)
72 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4.1E-21 148.0 8.2 150 93-253 49-201 (635)
73 4fmz_A Internalin; leucine ric 99.7 8.7E-16 3E-20 132.3 12.9 168 94-281 64-232 (347)
74 2z63_A TOLL-like receptor 4, v 99.7 1E-16 3.4E-21 147.1 7.4 132 145-281 392-529 (570)
75 4fmz_A Internalin; leucine ric 99.7 4E-16 1.4E-20 134.4 10.6 126 145-280 217-343 (347)
76 2z7x_B TOLL-like receptor 1, v 99.6 2.1E-16 7.3E-21 143.5 8.3 168 96-281 21-201 (520)
77 3j0a_A TOLL-like receptor 5; m 99.6 2E-16 6.7E-21 151.7 8.2 169 99-281 7-185 (844)
78 3e6j_A Variable lymphocyte rec 99.6 8.5E-16 2.9E-20 124.9 10.8 136 93-240 37-174 (229)
79 3o53_A Protein LRIM1, AGAP0063 99.6 2.2E-17 7.6E-22 140.8 1.1 167 96-278 99-270 (317)
80 3o53_A Protein LRIM1, AGAP0063 99.6 2.6E-16 8.9E-21 134.2 7.6 173 94-281 56-248 (317)
81 4g8a_A TOLL-like receptor 4; l 99.6 1.8E-16 6.3E-21 146.8 7.0 158 102-273 37-200 (635)
82 1xeu_A Internalin C; cellular 99.6 1.8E-16 6.2E-21 131.6 6.0 143 94-258 39-181 (263)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.4E-16 3.2E-20 140.6 10.8 106 93-212 49-157 (562)
84 2ell_A Acidic leucine-rich nuc 99.6 5.5E-16 1.9E-20 119.8 7.8 131 94-238 22-160 (168)
85 2z7x_B TOLL-like receptor 1, v 99.6 6.7E-16 2.3E-20 140.2 9.6 152 116-281 321-479 (520)
86 1o6v_A Internalin A; bacterial 99.6 3.1E-15 1.1E-19 134.1 13.4 124 145-280 239-363 (466)
87 1o6v_A Internalin A; bacterial 99.6 2.4E-15 8.3E-20 134.8 12.1 166 94-279 66-252 (466)
88 1xeu_A Internalin C; cellular 99.6 2.4E-15 8.1E-20 124.8 11.0 146 114-280 36-182 (263)
89 3oja_A Leucine-rich immune mol 99.6 3.7E-16 1.3E-20 140.9 6.6 174 95-281 33-225 (487)
90 2v70_A SLIT-2, SLIT homolog 2 99.6 1.9E-15 6.5E-20 122.1 9.7 147 99-258 14-162 (220)
91 1h6t_A Internalin B; cell adhe 99.6 3.8E-15 1.3E-19 125.4 11.7 145 93-258 65-209 (291)
92 1dce_A Protein (RAB geranylger 99.6 8.2E-17 2.8E-21 147.4 1.5 172 95-276 348-566 (567)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.9E-15 1E-19 137.4 11.0 152 116-281 350-508 (562)
94 3bz5_A Internalin-J, INLJ; leu 99.6 4.9E-15 1.7E-19 132.5 12.2 160 95-280 63-222 (457)
95 2v9t_B SLIT homolog 2 protein 99.6 2.2E-15 7.5E-20 121.7 8.7 145 122-281 14-163 (220)
96 2xot_A Amphoterin-induced prot 99.6 9E-16 3.1E-20 133.2 6.6 153 94-258 37-198 (361)
97 3oja_A Leucine-rich immune mol 99.6 3.8E-16 1.3E-20 140.8 4.1 166 96-277 99-269 (487)
98 2ca6_A RAN GTPase-activating p 99.6 4.7E-16 1.6E-20 136.1 4.2 177 94-281 92-314 (386)
99 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.2E-20 114.8 6.4 126 118-257 16-148 (149)
100 2je0_A Acidic leucine-rich nuc 99.6 6.6E-16 2.2E-20 116.9 4.4 125 148-278 16-148 (149)
101 4b8c_D Glucose-repressible alc 99.6 7E-15 2.4E-19 138.5 11.8 154 95-258 172-325 (727)
102 2xot_A Amphoterin-induced prot 99.6 1.4E-15 4.8E-20 132.0 6.5 168 99-280 21-199 (361)
103 2ell_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 115.1 8.0 126 118-258 23-156 (168)
104 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-14 4E-19 130.0 12.0 159 94-280 83-243 (457)
105 4b8c_D Glucose-repressible alc 99.6 7.6E-16 2.6E-20 145.1 4.1 122 111-246 216-337 (727)
106 4ay9_X Follicle-stimulating ho 99.5 1.1E-14 3.8E-19 125.7 8.7 38 93-130 27-65 (350)
107 1a9n_A U2A', U2A'; complex (nu 99.5 6.1E-15 2.1E-19 114.8 5.9 128 114-258 14-149 (176)
108 1w8a_A SLIT protein; signaling 99.5 7.5E-15 2.6E-19 116.0 6.5 131 99-242 11-143 (192)
109 1m9s_A Internalin B; cell inva 99.5 4.3E-14 1.5E-18 130.3 12.3 145 93-258 62-206 (605)
110 1w8a_A SLIT protein; signaling 99.5 4.6E-14 1.6E-18 111.4 10.6 123 122-258 11-135 (192)
111 2ca6_A RAN GTPase-activating p 99.5 3.3E-15 1.1E-19 130.7 3.7 177 94-281 58-285 (386)
112 3cvr_A Invasion plasmid antige 99.5 4.4E-14 1.5E-18 129.1 10.1 155 94-281 78-241 (571)
113 2wfh_A SLIT homolog 2 protein 99.5 2E-13 6.7E-18 107.9 11.6 122 122-258 13-135 (193)
114 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 110.3 6.6 127 145-281 15-151 (176)
115 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 107.5 7.5 129 99-241 10-140 (177)
116 1dce_A Protein (RAB geranylger 99.5 1.4E-13 4.9E-18 126.0 9.0 120 120-256 442-567 (567)
117 1ds9_A Outer arm dynein; leuci 99.4 8.5E-16 2.9E-20 122.0 -5.7 132 108-255 37-180 (198)
118 1jl5_A Outer protein YOPM; leu 99.4 3.8E-13 1.3E-17 120.1 10.7 73 179-258 174-246 (454)
119 2wfh_A SLIT homolog 2 protein 99.4 2.4E-13 8.3E-18 107.4 8.2 124 100-238 14-139 (193)
120 3goz_A Leucine-rich repeat-con 99.4 2.4E-14 8.2E-19 124.2 2.5 174 97-281 52-264 (362)
121 3cvr_A Invasion plasmid antige 99.4 4.8E-13 1.6E-17 122.2 10.6 149 97-280 60-217 (571)
122 1ds9_A Outer arm dynein; leuci 99.4 1E-15 3.6E-20 121.5 -6.7 130 142-281 41-185 (198)
123 3goz_A Leucine-rich repeat-con 99.4 2.4E-14 8.1E-19 124.2 1.2 174 96-281 80-295 (362)
124 3g06_A SSPH2 (leucine-rich rep 99.4 1E-12 3.5E-17 121.4 11.4 73 201-281 221-295 (622)
125 1jl5_A Outer protein YOPM; leu 99.4 1.2E-12 4.1E-17 116.9 11.2 77 173-258 190-266 (454)
126 3g06_A SSPH2 (leucine-rich rep 99.4 1.1E-12 3.6E-17 121.3 10.3 120 93-238 58-194 (622)
127 1z7x_W Ribonuclease inhibitor; 99.4 7.7E-14 2.6E-18 124.6 1.6 177 95-281 27-238 (461)
128 1z7x_W Ribonuclease inhibitor; 99.4 1.2E-13 4.2E-18 123.2 2.8 176 95-280 55-266 (461)
129 2o6r_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 101.3 8.4 123 121-258 9-133 (177)
130 4ay9_X Follicle-stimulating ho 99.3 3.5E-12 1.2E-16 110.1 9.1 177 94-278 52-254 (350)
131 3ogk_B Coronatine-insensitive 99.3 3.5E-12 1.2E-16 117.4 8.2 176 95-280 111-303 (592)
132 3g39_A Variable lymphocyte rec 99.3 2.2E-11 7.6E-16 94.0 9.7 105 120-239 10-116 (170)
133 2r9u_A Variable lymphocyte rec 99.3 2.6E-11 9E-16 94.0 9.6 103 121-238 14-118 (174)
134 3ogk_B Coronatine-insensitive 99.2 1.7E-12 5.7E-17 119.5 2.5 176 97-279 139-351 (592)
135 2r9u_A Variable lymphocyte rec 99.2 8.5E-12 2.9E-16 96.8 6.0 112 99-224 15-127 (174)
136 3g39_A Variable lymphocyte rec 99.2 1.6E-11 5.6E-16 94.8 6.4 101 99-212 12-113 (170)
137 2p1m_B Transport inhibitor res 99.1 1.4E-11 4.6E-16 113.4 3.8 132 95-235 104-245 (594)
138 3un9_A NLR family member X1; l 99.0 3.2E-11 1.1E-15 104.8 -0.2 153 95-258 71-248 (372)
139 2ifg_A High affinity nerve gro 99.0 1E-09 3.5E-14 94.3 9.2 103 123-239 12-117 (347)
140 3un9_A NLR family member X1; l 99.0 5.9E-11 2E-15 103.1 0.2 152 118-281 71-250 (372)
141 2p1m_B Transport inhibitor res 99.0 1.1E-10 3.9E-15 107.2 1.4 62 217-278 281-346 (594)
142 2ifg_A High affinity nerve gro 99.0 4.5E-10 1.6E-14 96.5 5.1 102 100-213 12-115 (347)
143 3sb4_A Hypothetical leucine ri 98.9 1.2E-09 4E-14 93.3 7.3 96 177-275 225-326 (329)
144 3sb4_A Hypothetical leucine ri 98.9 8.4E-10 2.9E-14 94.2 4.3 77 200-278 225-305 (329)
145 2ra8_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 87.9 4.0 177 95-280 106-317 (362)
146 3rw6_A Nuclear RNA export fact 98.5 1.5E-07 5.2E-12 77.4 6.2 80 146-231 167-257 (267)
147 1io0_A Tropomodulin; LRR prote 98.4 2.5E-07 8.7E-12 72.0 5.4 115 112-237 29-163 (185)
148 4fdw_A Leucine rich hypothetic 98.4 5.4E-07 1.9E-11 78.9 7.5 17 113-129 174-190 (401)
149 2a5y_B CED-4; apoptosis; HET: 98.4 1.5E-07 5E-12 85.9 3.1 74 1-78 364-473 (549)
150 1io0_A Tropomodulin; LRR prote 98.4 2E-07 7E-12 72.6 3.4 114 139-258 26-160 (185)
151 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.5E-12 77.8 1.7 82 175-258 167-260 (267)
152 3e4g_A ATP synthase subunit S, 98.3 8.6E-08 2.9E-12 73.6 0.5 81 178-258 61-148 (176)
153 2ra8_A Uncharacterized protein 98.3 2.5E-06 8.7E-11 73.5 9.3 14 116-129 169-182 (362)
154 4fdw_A Leucine rich hypothetic 98.3 1.3E-06 4.4E-11 76.5 7.4 36 114-157 153-188 (401)
155 3e4g_A ATP synthase subunit S, 98.1 2E-06 7E-11 65.9 4.5 34 202-235 115-149 (176)
156 3sfz_A APAF-1, apoptotic pepti 97.1 0.00021 7.3E-09 71.0 3.6 72 2-76 366-452 (1249)
157 4fs7_A Uncharacterized protein 97.1 0.001 3.5E-08 57.8 7.3 141 114-273 248-391 (394)
158 4h09_A Hypothetical leucine ri 96.9 0.0025 8.6E-08 54.8 7.9 129 112-257 210-341 (379)
159 4fs7_A Uncharacterized protein 96.8 0.0028 9.4E-08 55.0 7.1 60 196-258 157-217 (394)
160 4gt6_A Cell surface protein; l 96.6 0.0034 1.2E-07 54.4 6.5 126 142-277 258-385 (394)
161 4h09_A Hypothetical leucine ri 96.5 0.0079 2.7E-07 51.7 8.0 106 113-234 234-342 (379)
162 4gt6_A Cell surface protein; l 96.3 0.0036 1.2E-07 54.3 4.9 126 112-257 258-386 (394)
163 3rfe_A Platelet glycoprotein I 96.2 0.008 2.8E-07 43.4 5.5 42 169-212 24-66 (130)
164 1vt4_I APAF-1 related killer D 96.2 0.0016 5.4E-08 62.9 1.8 63 2-69 357-436 (1221)
165 1pgv_A TMD-1, tropomodulin TMD 96.1 0.009 3.1E-07 46.4 5.4 113 116-235 38-167 (197)
166 3rfe_A Platelet glycoprotein I 95.6 0.021 7.2E-07 41.2 5.6 53 182-237 12-67 (130)
167 1z6t_A APAF-1, apoptotic prote 95.6 0.0059 2E-07 55.9 3.2 68 3-73 367-449 (591)
168 1pgv_A TMD-1, tropomodulin TMD 95.5 0.026 8.9E-07 43.8 6.0 88 141-235 33-136 (197)
169 1us7_B HSP90 CO-chaperone CDC3 29.8 5.9 0.0002 31.8 -1.6 44 8-51 185-235 (265)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2e-22 Score=172.96 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=152.6
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
...+++.|.+..+.+..++..+..+++|++|++++|. ...+ |..+..+++|++|+++ +|++.+.+|..
T Consensus 102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~------l~~l-p~~l~~l~~L~~L~L~-----~n~~~~~~p~~ 169 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP------LRAL-PASIASLNRLRELSIR-----ACPELTELPEP 169 (328)
T ss_dssp GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC------CCCC-CGGGGGCTTCCEEEEE-----EETTCCCCCSC
T ss_pred hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc------cccC-cHHHhcCcCCCEEECC-----CCCCccccChh
Confidence 3568999999999988888889999999999999998 3354 5558999999999999 87778888877
Q ss_pred ccc---------cCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCC
Q 043587 174 IEK---------LVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG 244 (285)
Q Consensus 174 i~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~ 244 (285)
++. +++|++|++++|.++.+|..++++++|++|++++|. +..+|..++.+++|++|++++|++.+.+|..
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred HhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 654 899999999999998999889999999999999998 6678888999999999999999888889999
Q ss_pred CCCCCcCCcccccc---ccCCccccccCCcCCCceecccCCC
Q 043587 245 IGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLGYV 283 (285)
Q Consensus 245 ~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~~~ 283 (285)
++.+++|++|++++ ....+..+..+++|+.|+++++..+
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 99999999999887 5667777889999999999887654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=4.1e-21 Score=164.76 Aligned_cols=174 Identities=24% Similarity=0.284 Sum_probs=155.8
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHH---------hcCCccceeeecccccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELF---------RELTSLRALDFCESYHSRS 164 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~---------~~~~~L~~L~L~~~~~~~~ 164 (285)
...+++.|.+..+.+..++..+..+++|++|++++|. +.+.+ |..+ .++++|++|+++ +|
T Consensus 125 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~-----~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~-----~n 193 (328)
T 4fcg_A 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACP-----ELTEL-PEPLASTDASGEHQGLVNLQSLRLE-----WT 193 (328)
T ss_dssp GGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET-----TCCCC-CSCSEEEC-CCCEEESTTCCEEEEE-----EE
T ss_pred ccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC-----Ccccc-ChhHhhccchhhhccCCCCCEEECc-----CC
Confidence 4578999999999998889999999999999999976 24443 3323 359999999999 88
Q ss_pred cCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCC
Q 043587 165 SLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG 244 (285)
Q Consensus 165 ~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~ 244 (285)
. ...+|..++.+++|++|++++|.++.+|+.++.+++|++|++++|...+.+|..++.+++|++|++++|++.+.+|..
T Consensus 194 ~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 194 G-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp C-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred C-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 8 458899999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587 245 IGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRR 279 (285)
Q Consensus 245 ~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~ 279 (285)
++.+++|++|++++ .+..|..++.+++|+.+++..
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 99999999999998 778899999999999887653
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.3e-20 Score=159.06 Aligned_cols=151 Identities=22% Similarity=0.276 Sum_probs=77.9
Q ss_pred CceeEEEEEecCCcc---cccchhccccccEEeecC-CCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 96 EKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDG-GRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
.+++.+++..+.+.. ++..+..+++|++|++++ |. +.+.+ |..|..+++|++|+++ +|.+.+.+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~-p~~l~~l~~L~~L~Ls-----~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPI-PPAIAKLTQLHYLYIT-----HTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCC-CGGGGGCTTCSEEEEE-----EECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccC-ChhHhcCCCCCEEECc-----CCeeCCcCC
Confidence 355555555555542 455555556666666553 43 22232 3335555555555555 555444455
Q ss_pred ccccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccC-CCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLV-NMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..+..+++|++|++++|.++ .+|..++.+++|++|++++|...+.+|..++.++ +|++|++++|.+.+..|..++.++
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 55555555555555555554 4455555555555555555553335555555554 555555555554444444444443
Q ss_pred cCCcccccc
Q 043587 250 GLRTLGEFT 258 (285)
Q Consensus 250 ~L~~L~l~~ 258 (285)
|++|++++
T Consensus 199 -L~~L~Ls~ 206 (313)
T 1ogq_A 199 -LAFVDLSR 206 (313)
T ss_dssp -CSEEECCS
T ss_pred -ccEEECcC
Confidence 44444444
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.4e-19 Score=147.93 Aligned_cols=177 Identities=23% Similarity=0.301 Sum_probs=145.3
Q ss_pred CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.+++.|.+..+.+..++. .+.++++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l~-----~n~l~~~~~ 102 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK------LQTLPAGIFKELKNLETLWVT-----DNKLQALPI 102 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC------CSCCCTTTTSSCTTCCEEECC-----SSCCCCCCT
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc------cCeeChhhhcCCCCCCEEECC-----CCcCCcCCH
Confidence 456789999999998887554 78899999999999998 445556667889999999999 888554445
Q ss_pred ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..+..+++|++|++++|.++.+|. .++++++|++|++++|. +..+|.. +..+++|++|++++|.+.+..+..+..++
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence 667889999999999999998875 46899999999999998 6666654 78999999999999988865556789999
Q ss_pred cCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 250 GLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 250 ~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+|++|++++ .......+..+++|+.|++.+.+
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 999999988 33333457888999999987754
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=7.9e-20 Score=155.73 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=103.3
Q ss_pred CCCceeEEEEEe-cCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 94 LDEKVRHLMLII-GEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 94 ~~~~l~~L~l~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
...+++.|.+.+ +.... .+..+.++++|++|++++|. +.+.+ |..|..+++|++|+++ +|.+.+.+|
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----l~~~~-p~~~~~l~~L~~L~Ls-----~N~l~~~~p 142 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGAI-PDFLSQIKTLVTLDFS-----YNALSGTLP 142 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEEC-CGGGGGCTTCCEEECC-----SSEEESCCC
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----eCCcC-CHHHhCCCCCCEEeCC-----CCccCCcCC
Confidence 345677777773 55443 56667777777777777776 23332 4446667777777777 666555666
Q ss_pred ccccccCCCceEeccccccc-ccchhhhcCC-CccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCC----
Q 043587 172 RNIEKLVHLRYLSLSFQHIE-KLPETLCELY-NLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGI---- 245 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~---- 245 (285)
..+..+++|++|++++|.++ .+|..++.++ +|++|++++|...+..|..++.+. |++|++++|.+.+..|..+
T Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence 66666777777777776665 5666666665 666666666654434555555444 5555555554444444444
Q ss_pred -------------------CCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587 246 -------------------GRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 246 -------------------~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
..+++|++|++++ .+..+..+..+++|+.|+++++
T Consensus 222 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 4445555555554 2344555556666666655543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=1.4e-19 Score=171.97 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=57.4
Q ss_pred CCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCce
Q 043587 200 LYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICG 276 (285)
Q Consensus 200 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~ 276 (285)
+++|+.|++++|+..+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++ .+..|..+..++.|+.|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 34566666666665566677777777777777777777777777777777777777776 556677777777777777
Q ss_pred eccc
Q 043587 277 IRRL 280 (285)
Q Consensus 277 i~~~ 280 (285)
++++
T Consensus 711 ls~N 714 (768)
T 3rgz_A 711 LSNN 714 (768)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 7665
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=4.2e-19 Score=149.11 Aligned_cols=175 Identities=23% Similarity=0.235 Sum_probs=103.6
Q ss_pred CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..+++.|.+..+.+... +..+.++++|++|++++|. ....+.+..+..+++|++|+++ +|.+.+..|..
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----~l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~ 124 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-----QLRSVDPATFHGLGRLHTLHLD-----RCGLQELGPGL 124 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-----TCCCCCTTTTTTCTTCCEEECT-----TSCCCCCCTTT
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC-----CccccCHHHhcCCcCCCEEECC-----CCcCCEECHhH
Confidence 34555555555554442 4455555666666665553 1222223445566666666666 66644444555
Q ss_pred ccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcC
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL 251 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 251 (285)
+..+++|++|++++|.++.+|. .++++++|++|++++|. ++.+|. .+..+++|++|++++|.+.+..|..++.+++|
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 6666667777777766666654 35566677777777766 444443 36666777777777776666556667777777
Q ss_pred Ccccccc---ccCCccccccCCcCCCceeccc
Q 043587 252 RTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 252 ~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++|++++ ....+..+..+++|+.|++++.
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 7777766 2223334666777777776654
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.6e-19 Score=150.40 Aligned_cols=176 Identities=19% Similarity=0.197 Sum_probs=145.2
Q ss_pred CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccccc-CCCcc
Q 043587 93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSS-LTPEI 170 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~ 170 (285)
..+.+++.|.+..+.+..++ ..+..+++|++|++++|. ...+.+..|..+++|++|+++ +|. +....
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~~l~~~~ 97 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLS-----DNAQLRSVD 97 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SCTTCCCCC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCC-----CCCCccccC
Confidence 45778999999999888754 568899999999999997 444446668899999999999 886 44444
Q ss_pred cccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587 171 PRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRL 248 (285)
Q Consensus 171 p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 248 (285)
|..+..+++|++|++++|.++.+ |..+.++++|++|++++|. ++.+| ..++.+++|++|++++|.+.+..+..+..+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 77889999999999999998877 4567889999999999998 55555 458899999999999998875555569999
Q ss_pred CcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587 249 TGLRTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 249 ~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++|++|++++ ....+..+..+++|+.|+++++
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 9999999998 4445677889999999998875
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=4.1e-19 Score=168.66 Aligned_cols=176 Identities=24% Similarity=0.268 Sum_probs=129.8
Q ss_pred CCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 95 DEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..+++.+.+..+.... .+..+..+++|++|++.+|. +.+. .|..+..+++|++|+++ +|.+.+.+|.+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-----l~~~-~p~~l~~l~~L~~L~L~-----~N~l~~~~p~~ 509 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-----LTGE-IPSGLSNCTNLNWISLS-----NNRLTGEIPKW 509 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-----CCSC-CCGGGGGCTTCCEEECC-----SSCCCSCCCGG
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-----ccCc-CCHHHhcCCCCCEEEcc-----CCccCCcCChH
Confidence 3455666666555543 55566666666666666665 2333 24557777777777777 77766777888
Q ss_pred ccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccc-------------------------------
Q 043587 174 IEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGI------------------------------- 221 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l------------------------------- 221 (285)
++.+++|++|++++|.++ .+|..++.+++|+.|++++|...+.+|..+
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 888888888888888866 677778888888888888887555555433
Q ss_pred ---------------------------------------cccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---c
Q 043587 222 ---------------------------------------GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---K 259 (285)
Q Consensus 222 ---------------------------------------~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~ 259 (285)
+.+++|+.|++++|.+.+.+|..++.+++|+.|++++ .
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 2346788888888888888888899999999999988 6
Q ss_pred cCCccccccCCcCCCceecccC
Q 043587 260 ACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 260 ~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+..+..++.+++|+.|+++++.
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCChHHhCCCCCCEEECCCCc
Confidence 7788889999999999888764
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.4e-18 Score=143.23 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=118.1
Q ss_pred CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+..++.|.+..+.+... +..+.++++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~ 100 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLGLA-----NNQLASLPL 100 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECT-----TSCCCCCCT
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEECC-----CCcccccCh
Confidence 4566788888888877763 3467888888888888887 334455667888888888888 777555455
Q ss_pred ccccccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|. .++.+++|++|++++|.+.+..|..+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 6677888888888888888887764 4678888888888887 555554 578888888888888887765566788888
Q ss_pred cCCcccccc
Q 043587 250 GLRTLGEFT 258 (285)
Q Consensus 250 ~L~~L~l~~ 258 (285)
+|+.|++++
T Consensus 180 ~L~~L~l~~ 188 (251)
T 3m19_A 180 KLQTITLFG 188 (251)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEeeC
Confidence 888888877
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=3.6e-18 Score=142.57 Aligned_cols=171 Identities=22% Similarity=0.247 Sum_probs=105.5
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..+++.+.+..+.+... ..+..+++|++|++++|. ...+ + .+..+++|++|+++ +|.+.+..+..+
T Consensus 40 l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~------l~~~-~-~l~~l~~L~~L~L~-----~n~l~~~~~~~~ 105 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNK------LHDI-S-ALKELTNLTYLILT-----GNQLQSLPNGVF 105 (272)
T ss_dssp HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSC------CCCC-G-GGTTCTTCCEEECT-----TSCCCCCCTTTT
T ss_pred ccceeeeeeCCCCcccc-cccccCCCCcEEECCCCC------CCCc-h-hhcCCCCCCEEECC-----CCccCccChhHh
Confidence 44566666666655432 345667777777777776 2222 2 35667777777777 666444444456
Q ss_pred cccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 175 EKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
+.+++|++|++++|.++.+|+. ++.+++|++|++++|. ++.+|. .++.+++|++|++++|.+.+..|..++.+++|+
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 6677777777777776666543 5667777777777776 444443 356677777777777766654444566777777
Q ss_pred cccccc---ccCCccccccCCcCCCceeccc
Q 043587 253 TLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 253 ~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+|++++ ....+..+..+++|+.|++.++
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 777766 3333344566677777776654
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.7e-18 Score=154.73 Aligned_cols=108 Identities=23% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.+++.|.+..+.+.. .+..+.++++|++|++++|. ...+.+..|.++++|++|+|+ +|.+....+
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~ 140 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGAFNGLASLNTLELF-----DNWLTVIPS 140 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SSCCSBCCT
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc------cCCcChhhccCcccCCEEECC-----CCcCCccCh
Confidence 456688888888887776 35677888888888888887 344445567777888888887 666333333
Q ss_pred ccccccCCCceEecccccccccch-hhhcCCCccEEecCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGC 211 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 211 (285)
..+..+++|++|++++|.++.+|. .+.++++|+.|++++|
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence 446667777777777777665553 3444444444444443
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=152.73 Aligned_cols=175 Identities=21% Similarity=0.239 Sum_probs=98.9
Q ss_pred CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.+++.|.+..+.+..+ +..+.++++|++|++++|. ...+.+..|.++++|++|+|+ +|.+....+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~-----~n~l~~~~~ 129 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------IRTIEIGAFNGLANLNTLELF-----DNRLTTIPN 129 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC------CCEECGGGGTTCSSCCEEECC-----SSCCSSCCT
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc------CCccChhhccCCccCCEEECC-----CCcCCeeCH
Confidence 4556778888888777663 3567777888888887776 334445557777777777777 666333333
Q ss_pred ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCC------------------------cCcCcccccccCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFD------------------------LEELPKGIGKLVN 226 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~------------------------~~~lp~~l~~l~~ 226 (285)
..+..+++|++|++++|.++.+|. .+.++++|++|++++|.. ++.+| .+..+++
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 208 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIK 208 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSS
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcc
Confidence 456666667777776666665543 333444444444444332 33333 2444445
Q ss_pred CceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587 227 MKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRR 279 (285)
Q Consensus 227 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~ 279 (285)
|++|++++|.+.+..|..+..+++|++|++++ ....+..+..+++|+.|++++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 55555555555444445555555555555554 222233445555555555544
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=5.5e-19 Score=149.88 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=123.6
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHH-HHHhcCCccceeeecccccccccCCCccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILE-ELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..+++.|.+..+.+..++..+..+++|++|++++|. ...+++ ..+..+++|++|+++ +|.+.+..+..
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~ 145 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN------LKQMSEFSVFLSLRNLIYLDIS-----HTHTRVAFNGI 145 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE------EESSTTTTTTTTCTTCCEEECT-----TSCCEECSTTT
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc------ccccccchhhhhccCCCEEECC-----CCcCCccchhh
Confidence 456777777777666666667777778888887776 333222 346777788888887 77755556666
Q ss_pred ccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcC
Q 043587 174 IEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL 251 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 251 (285)
+..+++|++|++++|.++. +|..+..+++|++|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 7777888888888887764 66777778888888888887444446677778888888888887765545567778888
Q ss_pred Ccccccc---ccCCccccccCC-cCCCceecccC
Q 043587 252 RTLGEFT---KACRLESLKNLE-HLQICGIRRLG 281 (285)
Q Consensus 252 ~~L~l~~---~~~~~~~l~~l~-~L~~L~i~~~~ 281 (285)
+.|++++ ....+..+..++ +|+.|++++..
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 8888877 444555666663 77777776653
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.4e-18 Score=147.38 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=96.5
Q ss_pred CCCCceeEEEEEecCCcccccc-hhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPVS-TRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.++++|.+..+.+..++.. +.++++|++|++++|.... .+.. +..+..+++|++|+++ +|. ...+|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~-~~~~~~~~~L~~L~Ls-----~n~-i~~l~ 94 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---KGCC-SQSDFGTTSLKYLDLS-----FNG-VITMS 94 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---EEEE-EHHHHSCSCCCEEECC-----SCS-EEEEE
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---ccCc-ccccccccccCEEECC-----CCc-cccCh
Confidence 3456788888888777765543 5778888888888776210 0111 2234556777777777 555 33344
Q ss_pred ccccccCCCceEecccccccccc--------------------------hhhhcCCCccEEecCCCCCcC-cCccccccc
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLP--------------------------ETLCELYNLETLDISGCFDLE-ELPKGIGKL 224 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp--------------------------~~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l 224 (285)
..+..+++|++|++++|.++.++ ..+.++++|++|++++|...+ ..|..+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 44555555555555555544443 233444455555555554222 244455555
Q ss_pred CCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587 225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++|++|++++|.+.+..|..++.+++|++|++++ .......+..+++|+.|+++++
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 5555555555555544455555555566655555 2222223555556666655544
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.8e-18 Score=144.53 Aligned_cols=176 Identities=17% Similarity=0.119 Sum_probs=97.8
Q ss_pred CCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
.+.+++.|.+..+.+...+. .+.++++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+.
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~ 94 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILT-----GNPIQSLALG 94 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc------CCccCHHHccCCcCCCEEECC-----CCccCccChh
Confidence 44566666666666655333 56666667777666665 333334445666666666666 5553333344
Q ss_pred cccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCC------
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVG------ 244 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~------ 244 (285)
.+..+++|++|++++|.+..++. .++++++|++|++++|.... .+|..++.+++|++|++++|.+.+..+..
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 55556666666666665555443 45555566666666555222 14555555556666666555544322222
Q ss_pred ---------------------CCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587 245 ---------------------IGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 245 ---------------------~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
.....+|++|++++ .......+..+++|+.|++++.
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 22333566666665 2222334577888888888754
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=1e-17 Score=138.10 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=139.0
Q ss_pred ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587 97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK 176 (285)
Q Consensus 97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~ 176 (285)
..+.+++.......+|..+. ++++.|++++|. ...+.+..|..+++|++|+++ +|.+.+..|..+..
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG------LATLSDATFRGLTKLTWLNLD-----YNQLQTLSAGVFDD 81 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECT-----TSCCCCCCTTTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC------cCccCHhHhcCcccCCEEECC-----CCcCCccCHhHhcc
Confidence 34566777777776676554 689999999998 444456668899999999999 88866666777899
Q ss_pred cCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 177 LVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 177 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
+++|++|++++|.++.+|. .+..+++|++|++++|. ++.+|.. +..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 9999999999999998875 56799999999999998 6666654 6889999999999998885555579999999999
Q ss_pred cccc---ccCCccccccCCcCCCceecccC
Q 043587 255 GEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 255 ~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
++++ ....+..+..+++|+.|++.+..
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 9998 33344568889999999988754
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=6.4e-18 Score=142.36 Aligned_cols=174 Identities=19% Similarity=0.138 Sum_probs=141.4
Q ss_pred CCCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+..++.|.+..+.+.. .+..+.++++|++|++++|. ...+++ ...+++|++|+++ +|. ...+|
T Consensus 28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~--~~~l~~L~~L~Ls-----~N~-l~~l~ 93 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------LTKLQV--DGTLPVLGTLDLS-----HNQ-LQSLP 93 (290)
T ss_dssp CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC------CCEEEC--CSCCTTCCEEECC-----SSC-CSSCC
T ss_pred CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc------cCcccC--CCCCCcCCEEECC-----CCc-CCcCc
Confidence 456789999999998877 35678899999999999998 333322 2678999999999 888 56788
Q ss_pred ccccccCCCceEecccccccccc-hhhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..+..+++|++|++++|.++.+| ..+.++++|++|++++|+ +..+|.. +..+++|++|++++|++....+..+..++
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 88889999999999999999887 468899999999999998 5566554 67899999999999988744444568899
Q ss_pred cCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587 250 GLRTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 250 ~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+|+.|++++ -...+..+..+.+|+.|++.+..
T Consensus 173 ~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 999999988 44667777778889988887653
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.3e-17 Score=140.43 Aligned_cols=148 Identities=24% Similarity=0.206 Sum_probs=65.5
Q ss_pred CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587 96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE 175 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~ 175 (285)
.+++.|.+..+.+..++.. ..+++|++|++++|. ...+ +..+..+++|++|+++ +|++.+..|..+.
T Consensus 55 ~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~------l~~l-~~~~~~l~~L~~L~l~-----~N~l~~l~~~~~~ 121 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ------LQSL-PLLGQTLPALTVLDVS-----FNRLTSLPLGALR 121 (290)
T ss_dssp TTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC------CSSC-CCCTTTCTTCCEEECC-----SSCCCCCCSSTTT
T ss_pred CCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc------CCcC-chhhccCCCCCEEECC-----CCcCcccCHHHHc
Confidence 3444444444444432222 444445555555444 2222 2223444445555554 4442222233444
Q ss_pred ccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587 176 KLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT 253 (285)
Q Consensus 176 ~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 253 (285)
.+++|++|++++|.++.+|.. +..+++|+.|++++|+ +..+|.. +..+++|++|++++|.+. .+|..+..+.+|+.
T Consensus 122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199 (290)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence 445555555555554444432 2344455555555544 3333332 234445555555544443 44444444444544
Q ss_pred ccccc
Q 043587 254 LGEFT 258 (285)
Q Consensus 254 L~l~~ 258 (285)
+++.+
T Consensus 200 l~L~~ 204 (290)
T 1p9a_G 200 AFLHG 204 (290)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 44444
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=150.87 Aligned_cols=175 Identities=20% Similarity=0.248 Sum_probs=130.5
Q ss_pred CCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc-c
Q 043587 95 DEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP-R 172 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p-~ 172 (285)
..+++.|.+..+.+..++. .+.++++|++|++++|. ...+++..|..+++|+.|+++ +|+..+.++ .
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~------i~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~~ 179 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP------IESIPSYAFNRIPSLRRLDLG-----ELKRLSYISEG 179 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC------CCEECTTTTTTCTTCCEEECC-----CCTTCCEECTT
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc------ccccCHHHhhhCcccCEeCCC-----CCCCcceeCcc
Confidence 3455556665555554333 45556666666666665 333344446666666666666 544455554 3
Q ss_pred cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
.+..+++|++|++++|.++.+| .+..+++|+.|++++|......|..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred hhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 6788999999999999999888 588999999999999985555578899999999999999999888888999999999
Q ss_pred cccccc---ccCCccccccCCcCCCceecccC
Q 043587 253 TLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 253 ~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+|++++ .......+..+++|+.|++++..
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 999998 44444557889999999988754
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=7.4e-18 Score=140.49 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=136.2
Q ss_pred ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587 97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK 176 (285)
Q Consensus 97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~ 176 (285)
..+.+.+..+.+..+|..+. ++++.|++++|. ...+++..|..+++|++|+++ +|.+....+..+..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~i~~~~~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK------LSSLPSKAFHRLTKLRLLYLN-----DNKLQTLPAGIFKE 83 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC------CSCCCTTSSSSCTTCCEEECC-----SSCCSCCCTTTTSS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC------CCeeCHHHhcCCCCCCEEECC-----CCccCeeChhhhcC
Confidence 35677777777776666543 689999999998 445556668899999999999 88844433445678
Q ss_pred cCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccc
Q 043587 177 LVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG 255 (285)
Q Consensus 177 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 255 (285)
+++|++|++++|.++.+|. .+.++++|++|++++|......|..++.+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 9999999999999998875 457899999999999984444455678999999999999988755555689999999999
Q ss_pred ccc---ccCCccccccCCcCCCceeccc
Q 043587 256 EFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 256 l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+++ ....+..+..+++|+.|+++++
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 988 3333445888999999999875
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=3.6e-18 Score=157.96 Aligned_cols=178 Identities=15% Similarity=0.094 Sum_probs=145.5
Q ss_pred CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.+++.++++.+.+...+ ..+.++++|++|++++|. ...+.+..|.++++|++|+++ +|.+.+..|
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls-----~n~l~~~~p 97 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILT-----GNPIQSFSP 97 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCCCCT
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECC-----CCcccccCh
Confidence 46789999999999888744 488999999999999998 445557778999999999999 999666668
Q ss_pred ccccccCCCceEecccccccccc-hhhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..++.+++|++|++++|.++.+| ..++++++|++|++++|...+ .+|..++++++|++|++++|.+.+..|..++.+.
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 99999999999999999998886 678999999999999998444 5799999999999999999999887778888887
Q ss_pred cCC----cccccc--ccCCccccccCCcCCCceecccC
Q 043587 250 GLR----TLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 250 ~L~----~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+|+ +|++++ ....+.......+|+.|+++++.
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 776 577776 22222233333367878777653
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=5.1e-18 Score=152.61 Aligned_cols=178 Identities=19% Similarity=0.160 Sum_probs=130.9
Q ss_pred CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.+++.|++..+.+... +..+.++++|++|++++|. ...+.+..|.++++|++|+++ +|.+....+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~ 97 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLR-----SNRLKLIPL 97 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECC-----SSCCCSCCT
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECC-----CCcCCccCc
Confidence 4567889999998888774 5678889999999998887 444446668888899999998 777443333
Q ss_pred ccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCc
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTG 250 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 250 (285)
..+..+++|++|++++|.++.+ |..+.++++|+.|++++|......|..+..+++|++|++++|.+.+..+..+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 4577888888888888887765 456778888888888888744445667788888888888888776544445777788
Q ss_pred CCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 251 LRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 251 L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
|+.|++.+ .......+..+++|+.|+++++.
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 88887776 33334456677777777776654
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=9.1e-18 Score=150.06 Aligned_cols=180 Identities=19% Similarity=0.145 Sum_probs=108.2
Q ss_pred CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccc-----------
Q 043587 95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHS----------- 162 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~----------- 162 (285)
..+++.|.+..+.+..+ +..+.++++|++|++++|. ...+++..|..+++|++|++++|.+.
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 34555555555555442 2445555555555555554 22333333444555555555511000
Q ss_pred --------cccCCCcccc-cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecC
Q 043587 163 --------RSSLTPEIPR-NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNS 233 (285)
Q Consensus 163 --------~~~~~~~~p~-~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 233 (285)
+|+..+.++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|...+..|..+..+++|++|+++
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence 3332344332 4556677777777777777665 46677777777777777444446677777788888888
Q ss_pred CCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 234 RTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 234 ~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+|.+.+..|..+..+++|+.|++++ .......+..+++|+.|++++.+
T Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 8777766677777788888888777 33333446677777777776653
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=150.72 Aligned_cols=178 Identities=19% Similarity=0.212 Sum_probs=141.1
Q ss_pred CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
....+++.|.+..+.+...+. .+.++++|++|++++|. ...+.+..|.++++|++|+++ +|.+.+..+
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~ 117 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDLS-----YNYLSNLSS 117 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECC-----SSCCSSCCH
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEECC-----CCcCCcCCH
Confidence 355689999999998887555 78899999999999997 444456668889999999999 888444333
Q ss_pred ccccccCCCceEecccccccccch--hhhcCCCccEEecCCCCCcCcC-cccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE--TLCELYNLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRL 248 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 248 (285)
..++.+++|++|++++|.++.+|. .+.++++|++|++++|..++.+ |..++.+++|++|++++|.+.+..|..++.+
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 448889999999999999998886 6788999999999998545555 5578899999999999998888788899999
Q ss_pred CcCCcccccc--ccCCcc-ccccCCcCCCceecccC
Q 043587 249 TGLRTLGEFT--KACRLE-SLKNLEHLQICGIRRLG 281 (285)
Q Consensus 249 ~~L~~L~l~~--~~~~~~-~l~~l~~L~~L~i~~~~ 281 (285)
++|++|++++ ....+. .+..+++|+.|+++++.
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 9999999887 222222 23457788888877653
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=2.9e-17 Score=140.77 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=78.4
Q ss_pred HHHHHHhcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcC
Q 043587 140 ILEELFRELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEEL 217 (285)
Q Consensus 140 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~l 217 (285)
+++..|..+++|++|+++ +|.+.. ..+..+..+++|++|++++|.++.+|..+. ++|++|++++|...+..
T Consensus 136 ~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELG-----TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD 208 (330)
T ss_dssp BCHHHHTTCTTCCEEECC-----SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred cCHhHhcCCccccEEECC-----CCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC
Confidence 345556777777777777 555322 345556666677777777666666655433 55666666666533333
Q ss_pred cccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587 218 PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 218 p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
|..+..+++|++|++++|.+.+..|..+..+++|++|++++ -...+..+..+++|+.|+++++
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 45566666666666666655544444566666666666665 2344445556666666665543
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=3.3e-17 Score=139.18 Aligned_cols=167 Identities=17% Similarity=0.253 Sum_probs=130.0
Q ss_pred CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
....+++.|.+..+.+...+. +..+++|++|++++|. ...+ + .+..+++|++|+++ +|. ...++.
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~------l~~~-~-~~~~l~~L~~L~l~-----~n~-l~~~~~ 124 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP------LKNV-S-AIAGLQSIKTLDLT-----STQ-ITDVTP 124 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC------CSCC-G-GGTTCTTCCEEECT-----TSC-CCCCGG
T ss_pred hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc------CCCc-h-hhcCCCCCCEEECC-----CCC-CCCchh
Confidence 346788889998888877666 8888899999998887 3333 3 37888889999998 777 444553
Q ss_pred cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
+..+++|++|++++|.++.++. ++.+++|+.|++++|. +..+|. +..+++|++|++++|.+.+ +|. +..+++|+
T Consensus 125 -l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 198 (308)
T 1h6u_A 125 -LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLI 198 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred -hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCC
Confidence 8888899999999999888875 8888999999999987 666765 8888999999999987764 443 78888999
Q ss_pred cccccc-ccCCccccccCCcCCCceeccc
Q 043587 253 TLGEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 253 ~L~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+|++++ .-.....+..+++|+.|+++++
T Consensus 199 ~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 199 EVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp EEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred EEEccCCccCccccccCCCCCCEEEccCC
Confidence 999888 2222335888888988888765
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=2.8e-18 Score=156.86 Aligned_cols=177 Identities=20% Similarity=0.233 Sum_probs=144.8
Q ss_pred CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
.....++.|++..+.+... +..+.++++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..|
T Consensus 23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~ 91 (549)
T 2z81_A 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLS-----DNHLSSLSS 91 (549)
T ss_dssp CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECT-----TSCCCSCCH
T ss_pred cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECC-----CCccCccCH
Confidence 3457899999999988774 5678999999999999998 445556778999999999999 888666666
Q ss_pred ccccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRL 248 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 248 (285)
..++.+++|++|++++|.++. .|..++++++|++|++++|...+.+| ..++.+++|++|++++|.+.+..|..++.+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 679999999999999999884 46778999999999999998677776 578999999999999999998899999999
Q ss_pred CcCCcccccc--ccCCccc-cccCCcCCCceeccc
Q 043587 249 TGLRTLGEFT--KACRLES-LKNLEHLQICGIRRL 280 (285)
Q Consensus 249 ~~L~~L~l~~--~~~~~~~-l~~l~~L~~L~i~~~ 280 (285)
++|++|++.. ....+.. ++.+++|+.|+++++
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence 9999998876 2222222 245677777777654
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=5.1e-18 Score=156.90 Aligned_cols=132 Identities=18% Similarity=0.121 Sum_probs=78.3
Q ss_pred HHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCcccc
Q 043587 144 LFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELPKGI 221 (285)
Q Consensus 144 ~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~l 221 (285)
.+..+++|++|+++ +|.+.+..|..++.+++|++|++++|.++. +|..++.+++|++|++++|...+..|..+
T Consensus 419 ~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 419 AFLSLEKLLYLDIS-----YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTCTTCCEEECT-----TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred hhhccccCCEEECc-----CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 35555566666665 555444455556666666666666666553 45556666666666666666444445556
Q ss_pred cccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCC-cCCCceeccc
Q 043587 222 GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLE-HLQICGIRRL 280 (285)
Q Consensus 222 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~-~L~~L~i~~~ 280 (285)
+.+++|++|++++|++.+..|..++.+++|++|++++ -...+..+..++ +|+.|++.++
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCC
Confidence 6666666666666666655566666666666666666 223444455554 3666666554
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=3e-17 Score=140.69 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=108.2
Q ss_pred CCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
.+..++.|.+..+.+...+. .+.++++|++|++++|. ...+.+..|..+++|++|+++ +|. ...+|.
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~-l~~l~~ 117 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK------ISKISPGAFAPLVKLERLYLS-----KNQ-LKELPE 117 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECC-----SSC-CSBCCS
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc------CCeeCHHHhcCCCCCCEEECC-----CCc-CCccCh
Confidence 45678888888888777544 67888888888888887 334345567888888888888 555 334443
Q ss_pred c----------------------ccccCCCceEeccccccc---ccchhhhcCCCccEEecCCCCCcCcCcccccccCCC
Q 043587 173 N----------------------IEKLVHLRYLSLSFQHIE---KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNM 227 (285)
Q Consensus 173 ~----------------------i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 227 (285)
. +..+++|++|++++|.++ ..+..+.++++|++|++++|. ++.+|..+. ++|
T Consensus 118 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L 194 (330)
T 1xku_A 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSL 194 (330)
T ss_dssp SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTC
T ss_pred hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccC
Confidence 3 344444444444444433 123344455555555555554 444444332 556
Q ss_pred ceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587 228 KHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 228 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++|++++|.+.+..|..++.+++|++|++++ ....+..+..+++|+.|+++++
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 6666666666555566777788888888776 2333345777778888877765
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=3.7e-17 Score=138.89 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..+++.|.+.++.+..++ .+..+++|++|++++|. ...+.+ +..+++|++|+++ +|. ...++ .+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~------i~~~~~--~~~l~~L~~L~L~-----~n~-l~~~~-~~ 103 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ------ITDLAP--LKNLTKITELELS-----GNP-LKNVS-AI 103 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCCSCCEEECC-----SCC-CSCCG-GG
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc------CCCChh--HccCCCCCEEEcc-----CCc-CCCch-hh
Confidence 345666666666655443 46667777777777776 333322 6667777777777 666 33343 46
Q ss_pred cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
..+++|++|++++|.++.+|. +..+++|+.|++++|. +..+|. ++.+++|++|++++|.+.+ +|. +..+++|++|
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTL 178 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEE
Confidence 667777777777777766653 6677777777777776 555553 6667777777777776553 333 6667777777
Q ss_pred cccc-ccCCccccccCCcCCCceeccc
Q 043587 255 GEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++++ .......+..+++|+.|+++++
T Consensus 179 ~l~~n~l~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 179 KADDNKISDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred ECCCCccCcChhhcCCCCCCEEEccCC
Confidence 7766 2222233666677777766654
No 32
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.6e-17 Score=137.81 Aligned_cols=165 Identities=17% Similarity=0.255 Sum_probs=97.2
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..+++.+.+..+.+..++ .+..+++|++|++++|. ...+.+ +..+++|++|+++ +|. ...+| .+
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~------l~~~~~--l~~l~~L~~L~l~-----~n~-l~~~~-~l 108 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK------LTDIKP--LANLKNLGWLFLD-----ENK-VKDLS-SL 108 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECC-----SSC-CCCGG-GG
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc------cCCCcc--cccCCCCCEEECC-----CCc-CCCCh-hh
Confidence 345666666666555443 35666667777766665 223222 5666666777666 665 33333 36
Q ss_pred cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
..+++|++|++++|.++.++ .+..+++|+.|++++|. +..+ ..++.+++|++|++++|.+.+..| +..+++|+.|
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 66666677777666666653 46666666677766666 4444 356666666777766665553322 6666666666
Q ss_pred cccc-ccCCccccccCCcCCCceeccc
Q 043587 255 GEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++++ .-..+..+..+++|+.|+++++
T Consensus 184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 184 YLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred ECCCCcCCCChhhccCCCCCEEECcCC
Confidence 6666 2222334666666666666543
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=2.3e-17 Score=147.29 Aligned_cols=142 Identities=17% Similarity=0.115 Sum_probs=87.4
Q ss_pred CCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 94 LDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
.+.+++.|+++.+.+... +..+.++++|++|++++|. +...+++..|.++++|++|+++ +|.+.+..|.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLD-----YNQFLQLETG 97 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECT-----TCTTCEECTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCC-----CCccCccChh
Confidence 456777777777776653 5567777777777777776 2334445556677777777777 6664444466
Q ss_pred cccccCCCceEecccccccc-cchh--hhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEK-LPET--LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGI 245 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~ 245 (285)
.++.+++|++|++++|.++. +|.. ++++++|++|++++|...+..|.. ++.+++|++|++++|.+.+..|..+
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 66666777777777766653 2333 566666666666666633333443 5666666666666665554444333
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=2.5e-18 Score=160.02 Aligned_cols=171 Identities=12% Similarity=0.236 Sum_probs=92.7
Q ss_pred CceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchh-hHHHHHHhcC------CccceeeecccccccccCC
Q 043587 96 EKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNG-EILEELFREL------TSLRALDFCESYHSRSSLT 167 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~~~------~~L~~L~L~~~~~~~~~~~ 167 (285)
.+++.|.+..+.... +|..+.++++|++|++++|.. +.+ .+ |..+..+ ++|++|+++ +|.+.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~----l~~~~l-p~~~~~L~~~~~l~~L~~L~L~-----~n~l~ 318 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG----ISGEQL-KDDWQALADAPVGEKIQIIYIG-----YNNLK 318 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT----SCHHHH-HHHHHHHHHSGGGGTCCEEECC-----SSCCS
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC----Cccccc-hHHHHhhhccccCCCCCEEECC-----CCcCC
Confidence 445555555544332 444455555555555555530 133 22 3334443 556666665 55533
Q ss_pred Ccccc--cccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCC-CceeecCCCCCCcccCC
Q 043587 168 PEIPR--NIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVN-MKHLLNSRTSSVRYMPV 243 (285)
Q Consensus 168 ~~~p~--~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~-L~~L~l~~~~~~~~~p~ 243 (285)
.+|. .++.+++|++|++++|.++ .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++|.+. .+|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 5555 5666666666666666655 555 55566666666666665 4456666666666 666666666555 5565
Q ss_pred CCCCCC--cCCcccccc---ccCCccccc-------cCCcCCCceeccc
Q 043587 244 GIGRLT--GLRTLGEFT---KACRLESLK-------NLEHLQICGIRRL 280 (285)
Q Consensus 244 ~~~~l~--~L~~L~l~~---~~~~~~~l~-------~l~~L~~L~i~~~ 280 (285)
.++.+. +|++|++++ .+..+..+. .+++|+.|+++++
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 555443 566666665 333344444 5556666666654
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.9e-17 Score=138.32 Aligned_cols=153 Identities=23% Similarity=0.208 Sum_probs=83.3
Q ss_pred CCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 95 DEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..+++.|.+..+.+...+ ..+.++++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+..
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~ 119 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLVAV-----ETNLASLENFP 119 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TSCCCCSTTCC
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc------cCccChhhhcCCccccEEECC-----CCCccccCchh
Confidence 345555555555544422 245555555555555554 222223334555555555555 44422222223
Q ss_pred ccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCC---------------------------cCcCccccccc
Q 043587 174 IEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFD---------------------------LEELPKGIGKL 224 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~---------------------------~~~lp~~l~~l 224 (285)
++.+++|++|++++|.++. +|..++++++|++|++++|+. +..+|......
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~ 199 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence 4444555555555554443 344444445555555554442 33343334344
Q ss_pred CCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
.+|++|++++|.+.+..+..++.+++|+.|++++
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 5788999999987754445578999999999987
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=8.5e-18 Score=160.31 Aligned_cols=134 Identities=14% Similarity=0.256 Sum_probs=64.5
Q ss_pred cccchh--ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccccc-CCC-cccccccccC-------C
Q 043587 111 FPVSTR--RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSS-LTP-EIPRNIEKLV-------H 179 (285)
Q Consensus 111 ~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~-~~p~~i~~l~-------~ 179 (285)
+|..++ ++++|++|++++|. +.+.+ |..|.++++|++|+++ +|+ +.+ .+|..++.+. +
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~-----l~~~i-P~~l~~L~~L~~L~Ls-----~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCP-----NMTQL-PDFLYDLPELQSLNIA-----CNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCT-----TCCSC-CGGGGGCSSCCEEECT-----TCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred CChhhhhccCCCCCEEECcCCC-----CCccC-hHHHhCCCCCCEEECc-----CCCCcccccchHHHHhhhhcccccCC
Confidence 444444 55555555555554 23332 3334555555555555 443 333 3444444333 4
Q ss_pred CceEecccccccccch--hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCc-CCcccc
Q 043587 180 LRYLSLSFQHIEKLPE--TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTG-LRTLGE 256 (285)
Q Consensus 180 L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l 256 (285)
|++|++++|.++.+|. .++++++|+.|++++|. +..+| .++.+++|++|++++|.+. .+|..+..+++ |++|++
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 5555555555445544 45555555555555554 33444 4445555555555555444 44444554544 555554
Q ss_pred cc
Q 043587 257 FT 258 (285)
Q Consensus 257 ~~ 258 (285)
++
T Consensus 627 s~ 628 (876)
T 4ecn_A 627 SH 628 (876)
T ss_dssp CS
T ss_pred cC
Confidence 44
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=2.7e-17 Score=152.12 Aligned_cols=175 Identities=20% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc-c
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR-N 173 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~-~ 173 (285)
..+++.+.+..+.+..+|..+.++++|++|++.+|. ...+.+..+..+++|+.|+++ +|.+.+.+|. .
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~~~~~~~~~~ 345 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK------FENLCQISASNFPSLTHLSIK-----GNTKRLELGTGC 345 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC------CSBGGGGCGGGCTTCSEEECC-----SCSSCCBCCSST
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCC------cCcCchhhhhccCcCCEEECC-----CCCcccccchhh
Confidence 457888888888777777777888888888888887 333345556777777777777 5554444432 2
Q ss_pred ccccCCCceEeccccccccc---chhhhcCCCccEEecCCCCCcCcCcccccc-------------------------cC
Q 043587 174 IEKLVHLRYLSLSFQHIEKL---PETLCELYNLETLDISGCFDLEELPKGIGK-------------------------LV 225 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~-------------------------l~ 225 (285)
+..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..++. ++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 55555555555555554433 334445555555555555433333334444 44
Q ss_pred CCceeecCCCCCCcccCCCCCCCCcCCcccccc---cc---CCccccccCCcCCCceeccc
Q 043587 226 NMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KA---CRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 226 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~---~~~~~l~~l~~L~~L~i~~~ 280 (285)
+|++|++++|.+.+..|..++.+++|++|++++ .. ..+..+..+++|+.|+++++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 444445444444444444455555555555554 11 12233555555555555544
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=2.6e-17 Score=144.28 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=67.4
Q ss_pred CceeEEEEEecCCcccccc-hhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 96 EKVRHLMLIIGEGAIFPVS-TRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
.+++.+.+..+.+..++.. +..+++|++|++.+|. ...+++..|..+++|++|+++ +|.+.+..|..+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMG-----FNAIRYLPPHVF 113 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECC-----SSCCCCCCTTTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECC-----CCCCCcCCHHHh
Confidence 4555666665555444432 4555666666666555 223333345555556666665 555333334445
Q ss_pred cccCCCceEecccccccccchhh-hcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCC
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETL-CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSS 237 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 237 (285)
+.+++|++|++++|.++.+|..+ +++++|++|++++|...+..|..++.+++|++|++++|.+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 55555555555555555555432 4555555555555552222233355555555555555543
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=6.8e-17 Score=144.25 Aligned_cols=128 Identities=18% Similarity=0.128 Sum_probs=105.6
Q ss_pred CccceeeecccccccccCCCcccccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccccccCCC
Q 043587 149 TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIGKLVNM 227 (285)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 227 (285)
++|+.|+++ +|.+.+..|..++.+++|++|++++|.++.+ |..++++++|++|++++|...+..|..++.+++|
T Consensus 275 ~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLS-----KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp SCCCEEECC-----SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred cCceEEEec-----CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 456666666 7775666778889999999999999998877 4578899999999999998544457788999999
Q ss_pred ceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 228 KHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 228 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
++|++++|.+.+..|..++.+++|++|++++ ....+..+..+++|+.|+++++.
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 9999999999877788999999999999998 33334457889999999998764
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=153.00 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=143.2
Q ss_pred CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+..++.|+++.+.+... +..+.++++|++|++++|. ...+++..|.++++|++|+++ +|.+.+..|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~-----~n~l~~~~~ 93 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILT-----GNPIQSLAL 93 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECT
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCc-----CCcCCccCH
Confidence 4577899999999988774 4588999999999999998 445556778999999999999 888555556
Q ss_pred ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..++.+.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|.+.+..|..++.+.
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 889999999999999999998875 68999999999999998444 4789999999999999999988877777888888
Q ss_pred cC----Ccccccc---ccCCccccccCCcCCCceeccc
Q 043587 250 GL----RTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 250 ~L----~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+| +.|++++ ....+..+..+ +|+.|++.+.
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred ccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 88 7777776 22233344444 5777776654
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=4.5e-17 Score=135.86 Aligned_cols=153 Identities=24% Similarity=0.290 Sum_probs=129.5
Q ss_pred CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
...++++.|.+..+.+... ..+..+++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+.
T Consensus 60 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~ 127 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQ------LQSLPNGVFDKLTNLKELVLV-----ENQLQSLPDG 127 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECT-----TSCCCCCCTT
T ss_pred ccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCc------cCccChhHhcCCcCCCEEECC-----CCcCCccCHH
Confidence 3567899999999988764 478899999999999998 444456668899999999999 8886655566
Q ss_pred cccccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCc
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTG 250 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 250 (285)
.++.+++|++|++++|.++.+|+. ++.+++|++|++++|. +..+|. .++.+++|++|++++|.+.+..|..++.+++
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 688999999999999999988764 5789999999999998 555554 4689999999999999988777777899999
Q ss_pred CCcccccc
Q 043587 251 LRTLGEFT 258 (285)
Q Consensus 251 L~~L~l~~ 258 (285)
|+.|++.+
T Consensus 207 L~~L~l~~ 214 (272)
T 3rfs_A 207 LQYIWLHD 214 (272)
T ss_dssp CCEEECCS
T ss_pred CCEEEccC
Confidence 99999987
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.9e-17 Score=151.80 Aligned_cols=86 Identities=13% Similarity=0.218 Sum_probs=46.8
Q ss_pred CCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 95 DEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..+++.|.+..+.+...+ ..+.++++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..|..
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~ 166 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND------LSSLPRGIFHNTPKLTTLSMS-----NNNLERIEDDT 166 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCBCCTTT
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC------CCCCCHHHhccCCCCCEEEee-----CCcCCCCChhh
Confidence 445666666666555533 234566666666666665 233334444556666666666 55544444445
Q ss_pred ccccCCCceEeccccccc
Q 043587 174 IEKLVHLRYLSLSFQHIE 191 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~ 191 (285)
++.+++|++|++++|.++
T Consensus 167 ~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 167 FQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTTCTTCCEEECTTSCCS
T ss_pred hhcCCcCcEEECcCCCCC
Confidence 555555666655555544
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=1.2e-16 Score=137.10 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
....+++.|.+..+.+... +..+.++++|++|++++|. ...+.+..|..+++|++|+++ +|. ...+|
T Consensus 51 ~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~-l~~l~ 118 (332)
T 2ft3_A 51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK------ISKIHEKAFSPLRKLQKLYIS-----KNH-LVEIP 118 (332)
T ss_dssp CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECGGGSTTCTTCCEEECC-----SSC-CCSCC
T ss_pred CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc------cCccCHhHhhCcCCCCEEECC-----CCc-CCccC
Confidence 3456788888888887764 4478888899999998887 344446668888888888888 666 34555
Q ss_pred ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCF 212 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 212 (285)
..+. ++|++|++++|.++.+|. .+.++++|++|++++|.
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 4443 556666666666655543 24555556666655554
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=3.7e-17 Score=143.29 Aligned_cols=86 Identities=13% Similarity=0.218 Sum_probs=43.9
Q ss_pred CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..+++.|.+..+.+... +..+.++++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..|..
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~ 160 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND------LSSLPRGIFHNTPKLTTLSMS-----NNNLERIEDDT 160 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCBCCTTT
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc------cCcCCHHHhcCCCCCcEEECC-----CCccCccChhh
Confidence 44556666665555543 2335556666666666555 223333334555555555555 55533333444
Q ss_pred ccccCCCceEeccccccc
Q 043587 174 IEKLVHLRYLSLSFQHIE 191 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~ 191 (285)
+..+++|++|++++|.++
T Consensus 161 ~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TSSCTTCCEEECCSSCCS
T ss_pred ccCCCCCCEEECCCCcCC
Confidence 555555555555555444
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.5e-17 Score=129.35 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=102.3
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..+++.+.+..+.+..++ .+..+++|++|++++|. ...+ + .+..+++|++|+++ +|.+.+..|..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~------~~~~-~-~l~~l~~L~~L~l~-----~n~l~~~~~~~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH------ATNY-N-PISGLSNLERLRIM-----GKDVTSDKIPNL 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC------CSCC-G-GGTTCTTCCEEEEE-----CTTCBGGGSCCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC------CCcc-h-hhhcCCCCCEEEeE-----CCccCcccChhh
Confidence 456777777777776555 57777778888887775 2222 2 36677778888887 777555566677
Q ss_pred cccCCCceEecccccccc-cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587 175 EKLVHLRYLSLSFQHIEK-LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT 253 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 253 (285)
+.+++|++|++++|.++. .|..++.+++|++|++++|..++.+| .+..+++|++|++++|.+. .++ .+..+++|++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQ 185 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCE
Confidence 777778888888777764 55667777778888887776566666 5777777888888777665 344 5667777777
Q ss_pred ccccc
Q 043587 254 LGEFT 258 (285)
Q Consensus 254 L~l~~ 258 (285)
|++++
T Consensus 186 L~l~~ 190 (197)
T 4ezg_A 186 LYAFS 190 (197)
T ss_dssp EEECB
T ss_pred EEeeC
Confidence 77665
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.5e-17 Score=151.20 Aligned_cols=173 Identities=15% Similarity=0.092 Sum_probs=108.8
Q ss_pred CCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc-
Q 043587 95 DEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR- 172 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~- 172 (285)
..+++.|.+..+.+...+ ..+..+++|++|++++|. ...+++..|.++++|++|+++ +|.+. .+|.
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~-~l~~~ 141 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA------IRYLPPHVFQNVPLLTVLVLE-----RNDLS-SLPRG 141 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCC-CCCTT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc------CCCCCHHHHcCCCCCCEEEee-----CCCCC-CCCHH
Confidence 456777777777766633 367777788888887776 334455557777888888887 77733 4443
Q ss_pred cccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc---------------------------------
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP--------------------------------- 218 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp--------------------------------- 218 (285)
.++.+++|++|++++|.++.+++ .++++++|++|++++|. +..+|
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 35778888888888888776654 57777777777777776 32221
Q ss_pred ---------------------------ccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccC
Q 043587 219 ---------------------------KGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNL 269 (285)
Q Consensus 219 ---------------------------~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l 269 (285)
..++.+++|++|++++|.+.+..|..++.+++|+.|++++ -...+..+..+
T Consensus 221 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 300 (597)
T 3oja_B 221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 300 (597)
T ss_dssp SCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCC
T ss_pred CcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccC
Confidence 1244555666666666666555566666666666666665 12223334445
Q ss_pred CcCCCceeccc
Q 043587 270 EHLQICGIRRL 280 (285)
Q Consensus 270 ~~L~~L~i~~~ 280 (285)
++|+.|+++++
T Consensus 301 ~~L~~L~Ls~N 311 (597)
T 3oja_B 301 PTLKVLDLSHN 311 (597)
T ss_dssp TTCCEEECCSS
T ss_pred CCCcEEECCCC
Confidence 55555555544
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.3e-17 Score=140.35 Aligned_cols=172 Identities=17% Similarity=0.084 Sum_probs=94.2
Q ss_pred CCceeEEEEEecCCcccccchhcc-----ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRI-----KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE 169 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 169 (285)
..+++.|.+..+.+...+..+..+ ++|++|++++|. ...+++..|..+++|++|+++ +|++.+.
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~ 188 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH------SLNFSCEQVRVFPALSTLDLS-----DNPELGE 188 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS------CCCCCTTTCCCCSSCCEEECC-----SCTTCHH
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC------CccchHHHhccCCCCCEEECC-----CCCcCcc
Confidence 345556666655555544445554 556666666655 233333445566666666666 5554333
Q ss_pred --ccccc--cccCCCceEecccccccccc---hh-hhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcc
Q 043587 170 --IPRNI--EKLVHLRYLSLSFQHIEKLP---ET-LCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRY 240 (285)
Q Consensus 170 --~p~~i--~~l~~L~~L~l~~~~l~~lp---~~-i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~ 240 (285)
+|..+ +.+++|++|++++|.++.++ .. +.++++|++|++++|...+..| ..+..+++|++|++++|.+. .
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 267 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence 22233 55666666666666665332 22 2355666666666666333332 23445666777777666655 5
Q ss_pred cCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceeccc
Q 043587 241 MPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 241 ~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+|..+. ++|++|++++ .-.....+..+++|+.|++++.
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTC
T ss_pred hhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCC
Confidence 665555 6667777666 1111122667777777777654
No 48
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=8.7e-17 Score=149.59 Aligned_cols=170 Identities=19% Similarity=0.181 Sum_probs=104.3
Q ss_pred ceeEEEEEecCCcc-cccchh-------ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC
Q 043587 97 KVRHLMLIIGEGAI-FPVSTR-------RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP 168 (285)
Q Consensus 97 ~l~~L~l~~~~~~~-~~~~~~-------~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 168 (285)
+++.+.+..+.+.. .+..+. .+++|++|++++|. ...+++..+..+++|++|+++ +|.+.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~------l~~lp~~~~~~l~~L~~L~Ls-----~N~l~- 470 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ------ISKFPKELFSTGSPLSSINLM-----GNMLT- 470 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC------CCSCCTHHHHTTCCCSEEECC-----SSCCS-
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc------cCcCCHHHHccCCCCCEEECC-----CCCCC-
Confidence 34555555554433 233333 44566666666665 234445555667777777777 66633
Q ss_pred cccccccc--------cCCCceEecccccccccchhhh--cCCCccEEecCCCCCcCcCcccccccCCCceeec------
Q 043587 169 EIPRNIEK--------LVHLRYLSLSFQHIEKLPETLC--ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLN------ 232 (285)
Q Consensus 169 ~~p~~i~~--------l~~L~~L~l~~~~l~~lp~~i~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l------ 232 (285)
.+|..+.. +++|++|++++|.++.+|..+. .+++|+.|++++|+ +..+|..++.+++|++|++
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCT
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCccc
Confidence 55544332 1267777777777777777665 77777777777776 4447777777777777777
Q ss_pred CCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587 233 SRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 233 ~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
++|.+.+.+|..++.+++|++|++++ -...+..+. ++|+.|++++++
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCT
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCC
Confidence 34556667777777777777777776 333333333 567777776653
No 49
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.1e-17 Score=143.49 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=143.1
Q ss_pred CCCceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccc-cCCC-c
Q 043587 94 LDEKVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRS-SLTP-E 169 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~-~ 169 (285)
...+++.|++..+.+.. .+..+..+++|++|++.+|. +... .+..+..+++|++|+++ +| .+.+ .
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-----l~~~-~~~~l~~~~~L~~L~L~-----~~~~l~~~~ 159 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-----LSDP-IVNTLAKNSNLVRLNLS-----GCSGFSEFA 159 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-----CCHH-HHHHHTTCTTCSEEECT-----TCBSCCHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-----cCHH-HHHHHhcCCCCCEEECC-----CCCCCCHHH
Confidence 45789999999887653 56678899999999999997 3444 46668899999999999 87 4333 3
Q ss_pred ccccccccCCCceEecccc-cccc--cchhhhcCC-CccEEecCCCC-Cc--CcCcccccccCCCceeecCCCC-CCccc
Q 043587 170 IPRNIEKLVHLRYLSLSFQ-HIEK--LPETLCELY-NLETLDISGCF-DL--EELPKGIGKLVNMKHLLNSRTS-SVRYM 241 (285)
Q Consensus 170 ~p~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~~--~~lp~~l~~l~~L~~L~l~~~~-~~~~~ 241 (285)
++..+..+++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..+|..+..+++|++|++++|. +....
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 6777888999999999999 7874 677788999 99999999995 13 4567778899999999999998 55677
Q ss_pred CCCCCCCCcCCcccccc----ccCCccccccCCcCCCceeccc
Q 043587 242 PVGIGRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 242 p~~~~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+..+..+++|++|++++ ....+..+.++++|+.|+++++
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77899999999999988 2233346888999999999987
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.4e-16 Score=126.54 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=126.5
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc-
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK- 192 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~- 192 (285)
....+++|+.|++++|. ...+ + .+..+++|++|+++ +|. ...+ ..+..+++|++|++++|.++.
T Consensus 39 ~~~~l~~L~~L~l~~n~------i~~l-~-~l~~l~~L~~L~l~-----~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~ 103 (197)
T 4ezg_A 39 TEAQMNSLTYITLANIN------VTDL-T-GIEYAHNIKDLTIN-----NIH-ATNY-NPISGLSNLERLRIMGKDVTSD 103 (197)
T ss_dssp BHHHHHTCCEEEEESSC------CSCC-T-TGGGCTTCSEEEEE-----SCC-CSCC-GGGTTCTTCCEEEEECTTCBGG
T ss_pred ChhhcCCccEEeccCCC------ccCh-H-HHhcCCCCCEEEcc-----CCC-CCcc-hhhhcCCCCCEEEeECCccCcc
Confidence 44788999999999998 4454 3 38899999999999 876 4444 478899999999999999885
Q ss_pred cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCc
Q 043587 193 LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEH 271 (285)
Q Consensus 193 lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~ 271 (285)
.|..++++++|++|++++|......|..++.+++|++|++++|...+.+| .+..+++|++|++++ .-..+..+..+++
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~ 182 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPK 182 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSS
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCC
Confidence 67789999999999999999665678889999999999999998455776 699999999999998 3333448899999
Q ss_pred CCCceecccC
Q 043587 272 LQICGIRRLG 281 (285)
Q Consensus 272 L~~L~i~~~~ 281 (285)
|+.|++++..
T Consensus 183 L~~L~l~~N~ 192 (197)
T 4ezg_A 183 LNQLYAFSQT 192 (197)
T ss_dssp CCEEEECBC-
T ss_pred CCEEEeeCcc
Confidence 9999998653
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=156.09 Aligned_cols=177 Identities=20% Similarity=0.134 Sum_probs=145.5
Q ss_pred CCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 94 LDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
.+.+++.|+++.+.+.. .+..+.++++|++|++++|. ....+.+..|.++++|++|+|+ +|.+.+..|.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~Ls-----~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILDLG-----SSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEECT-----TCCCCEECTT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEECC-----CCcCcccCHh
Confidence 67899999999998877 56789999999999999995 3555557779999999999999 8886666789
Q ss_pred cccccCCCceEecccccccc-cchh--hhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEK-LPET--LCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRL 248 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 248 (285)
.++.+.+|++|++++|.++. +|.. ++++++|++|++++|...+..| ..++++++|++|++++|.+.+..|..++.+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 99999999999999999875 5554 8899999999999998544433 578999999999999999888788888877
Q ss_pred --CcCCcccccc---ccCCccccccCCc------CCCceeccc
Q 043587 249 --TGLRTLGEFT---KACRLESLKNLEH------LQICGIRRL 280 (285)
Q Consensus 249 --~~L~~L~l~~---~~~~~~~l~~l~~------L~~L~i~~~ 280 (285)
++|+.|++.. ....+..++.+++ |+.|+++++
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 7899998887 3334444444443 888888776
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.2e-17 Score=135.07 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=68.6
Q ss_pred CceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccc-ccCCCccccc
Q 043587 96 EKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSR-SSLTPEIPRN 173 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~p~~ 173 (285)
.+++.+.+..+.+..++. .+.++++|++|++++|. ....+++..|.++++|++|+++ + |.+.+..+..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-----~l~~i~~~~f~~l~~L~~L~l~-----~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-----TLQQLESHSFYNLSKVTHIEIR-----NTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-----SCCEECTTTEESCTTCCEEEEE-----EETTCCEECTTS
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-----CcceeCHhHcCCCcCCcEEECC-----CCCCeeEcCHHH
Confidence 345555555555544332 44455555555555552 0222223334445555555554 4 3322212233
Q ss_pred ccccCCCceEecccccccccch---------------------------hhhcCCCcc-EEecCCCCCcCcCcccccccC
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPE---------------------------TLCELYNLE-TLDISGCFDLEELPKGIGKLV 225 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~---------------------------~i~~l~~L~-~L~l~~~~~~~~lp~~l~~l~ 225 (285)
+..+++|++|++++|.++.+|. .+.++++|+ .|++++|. +..+|......+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCC
Confidence 4444445555555444444443 244445555 55555554 334444332334
Q ss_pred CCceeecCCCC-CCcccCCCCCCC-CcCCcccccc
Q 043587 226 NMKHLLNSRTS-SVRYMPVGIGRL-TGLRTLGEFT 258 (285)
Q Consensus 226 ~L~~L~l~~~~-~~~~~p~~~~~l-~~L~~L~l~~ 258 (285)
+|++|++++|+ +.+..+..+..+ ++|++|++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 55555555553 332223344555 5555555554
No 53
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.5e-17 Score=132.27 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=85.1
Q ss_pred EEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCc
Q 043587 102 MLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLR 181 (285)
Q Consensus 102 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~ 181 (285)
.+..+.+..+|..+. ++++.|++.+|. ...+++..|..+++|++|+++ +|.+.+..|..+..+++|+
T Consensus 17 ~c~~~~l~~iP~~l~--~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls-----~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 17 DCRGKGLTEIPTNLP--ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLS-----NNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp ECTTSCCSSCCSSCC--TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECC-----SSCCCEECTTTTTTCSSCC
T ss_pred EcCCCCcCcCCCccC--cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECC-----CCcCCCcCHHHhhCCcCCC
Confidence 333344443443332 466666666665 333344446666666666666 6664444456666666666
Q ss_pred eEecccccccccchh-hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 182 YLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 182 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
+|++++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|.+.+..+..+..+++|++|++.+
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 777766666666654 35566666677666663333345566666667777666666654444566666666666665
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=6.7e-17 Score=151.41 Aligned_cols=174 Identities=19% Similarity=0.164 Sum_probs=139.0
Q ss_pred CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.++++|+++.+.+...+. .+.++++|++|++++|. ...+.+..|.++++|++|+++ +|.+. .+|
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~-~l~ 89 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQ-----HNELS-QLS 89 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECC-----SSCCC-CCC
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECC-----CCccC-ccC
Confidence 456799999999998887554 68999999999999998 444457779999999999999 88844 555
Q ss_pred -ccccccCCCceEecccccccccc-hhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCC--C
Q 043587 172 -RNIEKLVHLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIG--R 247 (285)
Q Consensus 172 -~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~--~ 247 (285)
..++.+++|++|++++|.++.+| ..++++++|++|++++|...+..|..++++++|++|++++|.+.+..|..++ .
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 46999999999999999998887 5789999999999999986666677789999999999999988765554443 5
Q ss_pred CCcCCcccccc---ccCCccccccCCcCCCceec
Q 043587 248 LTGLRTLGEFT---KACRLESLKNLEHLQICGIR 278 (285)
Q Consensus 248 l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~ 278 (285)
+++|++|++++ ....+..+..+++|+.|++.
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 68999999987 33344555555555544443
No 55
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=6.8e-18 Score=144.84 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=147.4
Q ss_pred CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587 96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE 175 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~ 175 (285)
..++.+.+..+.+...+..+..+++|++|++++|. +.....+..+..+++|++|+++ +|.+.+..|..++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~~~~~~~~L~~L~L~-----~~~l~~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLE-----GLRLSDPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECT-----TCBCCHHHHHHHT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-----cCHHHHHHHHhhCCCCCEEeCc-----CcccCHHHHHHHh
Confidence 56777888777666655567789999999999997 4444357778999999999999 8886667788899
Q ss_pred ccCCCceEecccc-ccc--ccchhhhcCCCccEEecCCC-CCcCc--CcccccccC-CCceeecCCCC--CC-cccCCCC
Q 043587 176 KLVHLRYLSLSFQ-HIE--KLPETLCELYNLETLDISGC-FDLEE--LPKGIGKLV-NMKHLLNSRTS--SV-RYMPVGI 245 (285)
Q Consensus 176 ~l~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~-~~~~~--lp~~l~~l~-~L~~L~l~~~~--~~-~~~p~~~ 245 (285)
.+++|++|++++| .++ .+|..+.++++|++|++++| . ++. +|..+..++ +|++|++++|. +. +.+|..+
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 9999999999999 577 47777889999999999999 6 553 677789999 99999999993 44 4567778
Q ss_pred CCCCcCCcccccc----ccCCccccccCCcCCCceecccCCCC
Q 043587 246 GRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRLGYVS 284 (285)
Q Consensus 246 ~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~~~~~ 284 (285)
+.+++|++|++++ ....+..+..+++|+.|+++++.++.
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 8899999999998 24667788999999999999987654
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=142.55 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=138.4
Q ss_pred EEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCC
Q 043587 101 LMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHL 180 (285)
Q Consensus 101 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L 180 (285)
.+...+....+|..+. ++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..|..++.+++|
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR------ITYISNSDLQRCVNLQALVLT-----SNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECT-----TSCCCEECTTTTTTCTTC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc------CcccCHHHhccCCCCCEEECC-----CCccCccCHhhcCCCCCC
Confidence 4555666666666544 589999999998 445556568999999999999 888555557789999999
Q ss_pred ceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCC-CCcccCCCCCCCCcCCcccc
Q 043587 181 RYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTS-SVRYMPVGIGRLTGLRTLGE 256 (285)
Q Consensus 181 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l 256 (285)
++|++++|.++.+|.. ++++++|++|++++|. ++.+|. .+..+++|++|++++|. +....|..++.+++|++|++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 9999999999999876 7899999999999998 777876 68899999999999995 44444678999999999999
Q ss_pred cc---ccCCccccccCCcCCCceecccC
Q 043587 257 FT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 257 ~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
++ ....+..+..+++|+.|+++++.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCc
Confidence 88 44457789999999999998764
No 57
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=134.98 Aligned_cols=173 Identities=16% Similarity=0.062 Sum_probs=113.0
Q ss_pred CCceeEEEEEecCCcccc-----cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc
Q 043587 95 DEKVRHLMLIIGEGAIFP-----VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE 169 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 169 (285)
..+++.|.+..+.+.... ..+..+++|++|++++|. ...+++..|..+++|++|+++ +|++.+.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~ 184 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH------SPAFSCEQVRAFPALTSLDLS-----DNPGLGE 184 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS------SCCCCTTSCCCCTTCCEEECC-----SCTTCHH
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC------cchhhHHHhccCCCCCEEECC-----CCCCccc
Confidence 456777777777665411 223357777777777776 333345556777778888877 6664432
Q ss_pred --cc--ccccccCCCceEecccccccccchh----hhcCCCccEEecCCCCCcCcCccccccc---CCCceeecCCCCCC
Q 043587 170 --IP--RNIEKLVHLRYLSLSFQHIEKLPET----LCELYNLETLDISGCFDLEELPKGIGKL---VNMKHLLNSRTSSV 238 (285)
Q Consensus 170 --~p--~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~lp~~l~~l---~~L~~L~l~~~~~~ 238 (285)
++ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|......|..++.+ ++|++|++++|.+.
T Consensus 185 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 185 RGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 22 2235677788888888877665542 4567888888888887444447666665 57888888888776
Q ss_pred cccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceecccC
Q 043587 239 RYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 239 ~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
.+|..+. ++|++|++++ .-..+..+..+++|+.|++++..
T Consensus 265 -~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 265 -QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred -chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 6676664 6888888877 22222336777888888877653
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=5.8e-17 Score=132.57 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=104.4
Q ss_pred CCceeEEEEEe-cCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccc---eeeecccccccc-cCCC
Q 043587 95 DEKVRHLMLII-GEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLR---ALDFCESYHSRS-SLTP 168 (285)
Q Consensus 95 ~~~l~~L~l~~-~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~---~L~L~~~~~~~~-~~~~ 168 (285)
..+++.+.+.. +.+..++ ..+.++++|++|++.+|. ...+ |. |..+++|+ +|+++ +| . ..
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~------l~~l-p~-~~~l~~L~~L~~L~l~-----~N~~-l~ 144 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG------LKMF-PD-LTKVYSTDIFFILEIT-----DNPY-MT 144 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC------CCSC-CC-CTTCCBCCSEEEEEEE-----SCTT-CC
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC------Cccc-cc-cccccccccccEEECC-----CCcc-hh
Confidence 44666666665 5555533 355666667777776665 2222 22 55566666 77777 77 6 44
Q ss_pred ccc-ccccccCCCc-eEecccccccccchhhhcCCCccEEecCCCCCcCcCc-cccccc-CCCceeecCCCCCCcccCCC
Q 043587 169 EIP-RNIEKLVHLR-YLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP-KGIGKL-VNMKHLLNSRTSSVRYMPVG 244 (285)
Q Consensus 169 ~~p-~~i~~l~~L~-~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l-~~L~~L~l~~~~~~~~~p~~ 244 (285)
.+| ..+..+++|+ +|++++|.++.+|......++|+.|++++|+.++.+| ..+..+ ++|++|++++|++. .+|..
T Consensus 145 ~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~ 223 (239)
T 2xwt_C 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK 223 (239)
T ss_dssp EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT
T ss_pred hcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh
Confidence 444 4588899999 9999999999998876666899999999995366665 567888 99999999999876 56654
Q ss_pred CCCCCcCCcccccc
Q 043587 245 IGRLTGLRTLGEFT 258 (285)
Q Consensus 245 ~~~l~~L~~L~l~~ 258 (285)
.+++|+.|.+.+
T Consensus 224 --~~~~L~~L~l~~ 235 (239)
T 2xwt_C 224 --GLEHLKELIARN 235 (239)
T ss_dssp --TCTTCSEEECTT
T ss_pred --HhccCceeeccC
Confidence 566777776654
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1e-16 Score=147.68 Aligned_cols=164 Identities=17% Similarity=0.264 Sum_probs=86.0
Q ss_pred CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587 96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE 175 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~ 175 (285)
..++.|.+..+.+..++ .+..+++|+.|++++|. ...+++ +..+++|+.|+|+ +|. +..+| .+.
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~------l~~~~~--l~~l~~L~~L~Ls-----~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK------LTDIKP--LTNLKNLGWLFLD-----ENK-IKDLS-SLK 106 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC------CCCCGG--GGGCTTCCEEECC-----SSC-CCCCT-TST
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC------CCCChh--hccCCCCCEEECc-----CCC-CCCCh-hhc
Confidence 34555555555444332 35555666666666655 222222 5556666666665 555 23333 455
Q ss_pred ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccc
Q 043587 176 KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG 255 (285)
Q Consensus 176 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 255 (285)
.+++|++|++++|.+..+| .+..+++|+.|++++|. +..+ ..++.+++|++|++++|.+.+..| +..+++|+.|+
T Consensus 107 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp TCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred cCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence 5566666666666655543 35555666666666655 3334 345556666666666665543333 55566666666
Q ss_pred ccc-ccCCccccccCCcCCCceeccc
Q 043587 256 EFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 256 l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+++ ....+..+..+++|+.|+++++
T Consensus 182 Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 182 LSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred CcCCCCCCChHHccCCCCCEEEccCC
Confidence 555 2222234555555555555543
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=5.4e-17 Score=139.22 Aligned_cols=79 Identities=19% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCceEecccccccccc-hhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587 179 HLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF 257 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 257 (285)
+|++|++++|.++.++ ..+.++++|+.|++++|......|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 4444444444444333 34445555555555555422222234555555555555555444 455555555555555555
Q ss_pred c
Q 043587 258 T 258 (285)
Q Consensus 258 ~ 258 (285)
+
T Consensus 273 ~ 273 (332)
T 2ft3_A 273 T 273 (332)
T ss_dssp S
T ss_pred C
Confidence 4
No 61
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1e-16 Score=130.29 Aligned_cols=127 Identities=23% Similarity=0.332 Sum_probs=59.5
Q ss_pred ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc-ccccccCCCceEecccccccccchh-
Q 043587 119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP-RNIEKLVHLRYLSLSFQHIEKLPET- 196 (285)
Q Consensus 119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p-~~i~~l~~L~~L~l~~~~l~~lp~~- 196 (285)
++|++|++++|. ...+.+..|..+++|++|+++ +|++ +.+| ..+..+++|++|++++|.++.+|..
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~-----~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLG-----SNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECC-----CCCC-CCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 445555555554 222223334445555555555 4442 2222 3334455555555555555544432
Q ss_pred hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 197 LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 197 i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
+..+++|++|++++|. +..+|..+..+++|++|++++|.+.+..+..+..+++|+.|++.+
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred hCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 3445555555555554 444555555555555555555544432223344555555555444
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=135.34 Aligned_cols=173 Identities=15% Similarity=0.014 Sum_probs=137.3
Q ss_pred CCCceeEEEEEecCCcc-cccch--hccccccEEeecCCCCCCCCchhhHHHHHHhcC-----Cccceeeeccccccccc
Q 043587 94 LDEKVRHLMLIIGEGAI-FPVST--RRIKRMRSLLIDGGRSDHSSLNGEILEELFREL-----TSLRALDFCESYHSRSS 165 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-~~~~~--~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~ 165 (285)
...+++.|.+..+.+.. .+..+ ..+++|++|++++|. ...+ +..+..+ ++|++|+++ +|+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~-~~~~~~l~~~~~~~L~~L~L~-----~N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS------WATR-DAWLAELQQWLKPGLKVLSIA-----QAH 160 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB------CSSS-SSHHHHHHTTCCTTCCEEEEE-----SCS
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC------Ccch-hHHHHHHHHhhcCCCcEEEee-----CCC
Confidence 36789999999998875 66655 899999999999998 3333 3445555 899999999 999
Q ss_pred CCCcccccccccCCCceEecccccccc---cchhh--hcCCCccEEecCCCCCcCcC---ccc-ccccCCCceeecCCCC
Q 043587 166 LTPEIPRNIEKLVHLRYLSLSFQHIEK---LPETL--CELYNLETLDISGCFDLEEL---PKG-IGKLVNMKHLLNSRTS 236 (285)
Q Consensus 166 ~~~~~p~~i~~l~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~~~~l---p~~-l~~l~~L~~L~l~~~~ 236 (285)
+.+..|..++.+++|++|++++|.+.. +|..+ +.+++|++|++++|. +..+ +.. +..+++|++|++++|.
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 666666899999999999999999653 35555 889999999999998 6533 333 3578999999999999
Q ss_pred CCcccC-CCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587 237 SVRYMP-VGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 237 ~~~~~p-~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+.+..| ..+..+++|++|++++ -...+..+. ++|+.|+++++.
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC
T ss_pred CCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC
Confidence 887665 4567789999999998 335555555 789999888753
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=6e-17 Score=149.73 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=106.7
Q ss_pred CCCceeEEEEEecCCccc---ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc
Q 043587 94 LDEKVRHLMLIIGEGAIF---PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI 170 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 170 (285)
...+++.+.+..+.+... +..+.++++|++|++.+|. ...+.+..|..+++|+.|+++ +|.+.+..
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~ 416 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE------PLSLKTEAFKECPQLELLDLA-----FTRLKVKD 416 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS------CEEECTTTTTTCTTCSEEECT-----TCCEECCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc------CCcCCHHHhcCCccCCeEECC-----CCcCCCcc
Confidence 456778888887776653 4567777888888887776 333345556677777777777 66644443
Q ss_pred cc-cccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCc---CcccccccCCCceeecCCCCCCcccCCCC
Q 043587 171 PR-NIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEE---LPKGIGKLVNMKHLLNSRTSSVRYMPVGI 245 (285)
Q Consensus 171 p~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~---lp~~l~~l~~L~~L~l~~~~~~~~~p~~~ 245 (285)
|. .+..+++|++|++++|.++.. |..++.+++|++|++++|...+. .+..+..+++|++|++++|.+.+..|..+
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 32 356666666666666665543 34556666666666666663321 12345666666666666666665556666
Q ss_pred CCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587 246 GRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 246 ~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
+.+++|++|++++ ....+..+..++.| .|+++++
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 6666666666665 33344455555555 5555443
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=141.62 Aligned_cols=177 Identities=13% Similarity=0.063 Sum_probs=110.7
Q ss_pred CCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 94 LDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
...+++.|.+..+.+.. .+..+.++++|+.|++.+|. ...+++..+..+++|+.|+++ +|.+.+..+.
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~l~~l~~L~~L~l~-----~n~i~~~~~~ 194 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN------LTSIPTEALSHLHGLIVLRLR-----HLNINAIRDY 194 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC------CSSCCHHHHTTCTTCCEEEEE-----SCCCCEECTT
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc------CcccChhHhcccCCCcEEeCC-----CCcCcEeChh
Confidence 34567777777766655 34466677777777777776 333445556667777777776 4443222233
Q ss_pred cccccC------------------------CCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCC
Q 043587 173 NIEKLV------------------------HLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNM 227 (285)
Q Consensus 173 ~i~~l~------------------------~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 227 (285)
.+..++ +|++|++++|.++.+|. .+..+++|+.|++++|......+..+..+++|
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence 333343 55555666666666663 46677777777777776333334456777777
Q ss_pred ceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 228 KHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 228 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
++|++++|.+.+..|..+..+++|+.|++++ .......+..+++|+.|++.+..
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 7777777777766677777777777777776 33333446677777777776543
No 65
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.3e-16 Score=126.27 Aligned_cols=160 Identities=19% Similarity=0.273 Sum_probs=124.7
Q ss_pred CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
....+++.|.+..+.+...+. .+..+++|++|++.+|. ...+++..|..+++|++|+++ +|.+.+..+
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~ 93 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLS-----TNQLQSLPN 93 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCCCCT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECC-----CCcCCccCH
Confidence 456689999999998877554 46889999999999997 445456667889999999999 888554444
Q ss_pred ccccccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|++. +.++
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 5578899999999999999888764 6789999999999998 555555 4788999999999998654 3455
Q ss_pred cCCcccccc---ccCCccccccCCc
Q 043587 250 GLRTLGEFT---KACRLESLKNLEH 271 (285)
Q Consensus 250 ~L~~L~l~~---~~~~~~~l~~l~~ 271 (285)
+|+.|+++. .+..+..++.++.
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CHHHHHHHHHhCCceeeccCccccC
Confidence 788887766 6667777776653
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=8e-17 Score=136.89 Aligned_cols=176 Identities=14% Similarity=-0.005 Sum_probs=137.0
Q ss_pred CceeEEEEEecCCcc-cccch--hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 96 EKVRHLMLIIGEGAI-FPVST--RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~-~~~~~--~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
.+++.|.+..+.+.. .+..+ ..+++|++|++++|..... ...+....+..+++|++|+++ +|.+.+..|.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--~~~~~~~~~~~~~~L~~L~Ls-----~n~l~~~~~~ 163 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG--RSWLAELQQWLKPGLKVLSIA-----QAHSPAFSCE 163 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST--TSSHHHHHTTBCSCCCEEEEE-----CCSSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch--hhhhHHHHhhhccCCCEEEee-----CCCcchhhHH
Confidence 459999999998775 55555 8899999999999983210 001222345689999999999 9997666778
Q ss_pred cccccCCCceEecccccccc---cch--hhhcCCCccEEecCCCCCcCcCccc----ccccCCCceeecCCCCCCcccCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEK---LPE--TLCELYNLETLDISGCFDLEELPKG----IGKLVNMKHLLNSRTSSVRYMPV 243 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~---lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~~L~l~~~~~~~~~p~ 243 (285)
.++.+++|++|++++|++.. ++. .++++++|++|++++|. ++.+|.. ++.+++|++|++++|.+.+..|.
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 89999999999999999653 433 23689999999999998 6666542 57889999999999999877788
Q ss_pred CCCCC---CcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587 244 GIGRL---TGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 244 ~~~~l---~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
.+..+ ++|++|++++ -...+..+. ++|+.|+++++.
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC
T ss_pred hHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc
Confidence 88877 6999999998 334455553 789999988763
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=4e-16 Score=148.82 Aligned_cols=147 Identities=19% Similarity=0.181 Sum_probs=105.1
Q ss_pred cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc--------cCCCceEeccccccc
Q 043587 120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK--------LVHLRYLSLSFQHIE 191 (285)
Q Consensus 120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~--------l~~L~~L~l~~~~l~ 191 (285)
+|+.|++++|. ...++...+..+++|+.|+++ +|. ...+|..+.. +++|++|++++|.++
T Consensus 674 ~L~~L~Ls~N~------L~~lp~~~~~~l~~L~~L~Ls-----~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 674 NASTVTLSYNE------IQKFPTELFATGSPISTIILS-----NNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CEEEEECCSSC------CCSCCHHHHHTTCCCSEEECC-----SCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred CcCEEEccCCc------CCccCHHHHccCCCCCEEECC-----CCc-CCccChHHhccccccccccCCccEEECCCCCCc
Confidence 56666666665 334555556677888888888 776 3366655443 237888888888888
Q ss_pred ccchhhh--cCCCccEEecCCCCCcCcCcccccccCCCceeecCC------CCCCcccCCCCCCCCcCCcccccc--ccC
Q 043587 192 KLPETLC--ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSR------TSSVRYMPVGIGRLTGLRTLGEFT--KAC 261 (285)
Q Consensus 192 ~lp~~i~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~------~~~~~~~p~~~~~l~~L~~L~l~~--~~~ 261 (285)
.+|..+. .+++|+.|++++|. +..+|..++.+++|+.|++++ |.+.+.+|..++.+++|++|++++ -..
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~ 820 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred cchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence 8887776 78888888888887 555788888888888888865 666777888888888888888877 334
Q ss_pred CccccccCCcCCCceecccC
Q 043587 262 RLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 262 ~~~~l~~l~~L~~L~i~~~~ 281 (285)
.+..+. ++|+.|++++++
T Consensus 821 Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCSCCC--SSSCEEECCSCT
T ss_pred cCHhhc--CCCCEEECCCCC
Confidence 444444 578888887765
No 68
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=128.31 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=58.8
Q ss_pred CceeEEEEEecCCcccc--cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 96 EKVRHLMLIIGEGAIFP--VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..++.|.+..+.+...+ ..+..+++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~ 100 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILLT-----SNRLENVQHKM 100 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SSCCCCCCGGG
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEECC-----CCccCccCHhH
Confidence 34444555544444321 124445555555555544 222233334445555555554 44433333333
Q ss_pred ccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCC
Q 043587 174 IEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSS 237 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 237 (285)
+..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|..+..+++|++|++++|++
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 44455555555555554444 23344445555555555542222244444455555555554443
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=1.7e-16 Score=148.62 Aligned_cols=168 Identities=17% Similarity=0.058 Sum_probs=138.0
Q ss_pred EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587 100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH 179 (285)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~ 179 (285)
.++++...+..+|..+. +++++|++++|. ...+++..|.++++|++|+++ +|.+.+..|..++.+++
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDVG-----FNTISKLEPELCQKLPM 74 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEECC-----SSCCCCCCTTHHHHCTT
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEECC-----CCccCccCHHHHhcccC
Confidence 45666666666666554 799999999998 444556679999999999999 88877777888999999
Q ss_pred CceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 180 LRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 180 L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
|++|++++|.++.+|+ .++++++|++|++++|...+..|..++++++|++|++++|.+.+..|..++.+++|++|++++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 9999999999999987 589999999999999984443446799999999999999999888888899999999999987
Q ss_pred ---ccCCcccc--ccCCcCCCceeccc
Q 043587 259 ---KACRLESL--KNLEHLQICGIRRL 280 (285)
Q Consensus 259 ---~~~~~~~l--~~l~~L~~L~i~~~ 280 (285)
....+..+ ..+++|+.|+++++
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CcccccCHHHhhccccccccEEECCCC
Confidence 22233333 35688999998875
No 70
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.3e-16 Score=126.18 Aligned_cols=161 Identities=20% Similarity=0.186 Sum_probs=122.2
Q ss_pred EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587 100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH 179 (285)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~ 179 (285)
.+.+..+....++..+ .++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+..+..+++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~ 77 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS------LKSLPNGVFDELTSLTQLYLG-----GNKLQSLPNGVFNKLTS 77 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCTT
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc------cCcCChhhhcccccCcEEECC-----CCccCccChhhcCCCCC
Confidence 3444445554455443 4689999999998 445556668899999999999 88855444456788999
Q ss_pred CceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587 180 LRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF 257 (285)
Q Consensus 180 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 257 (285)
|++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|.+.+..+..+..+++|++|++.
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 99999999999988764 6899999999999998 556655 47899999999999998886555568999999999998
Q ss_pred cccCCccccccCCcCCCceec
Q 043587 258 TKACRLESLKNLEHLQICGIR 278 (285)
Q Consensus 258 ~~~~~~~~l~~l~~L~~L~i~ 278 (285)
+... .+.+++|+.|+++
T Consensus 157 ~N~~----~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 157 DNPW----DCTCPGIRYLSEW 173 (208)
T ss_dssp SCCB----CCCTTTTHHHHHH
T ss_pred CCCe----ecCCCCHHHHHHH
Confidence 7211 1334455555443
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=6.2e-17 Score=147.90 Aligned_cols=166 Identities=18% Similarity=0.137 Sum_probs=136.8
Q ss_pred EEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCce
Q 043587 103 LIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRY 182 (285)
Q Consensus 103 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~ 182 (285)
...+....+|..+. ++|++|++++|. ...+.+..|.++++|++|+++ +|.+.+..|..++.+++|++
T Consensus 12 ~~~~~l~~ip~~~~--~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 12 GRSRSFTSIPSGLT--AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILK-----SSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECT-----TSCCCEECTTTTTTCTTCCE
T ss_pred CCCCccccccccCC--CCccEEECcCCc------cCccChhhhhcCCcccEEECC-----CCCcCccChhhccccccCCE
Confidence 33444555665543 799999999998 444456668999999999999 88866656688999999999
Q ss_pred Eecccccccccchh-hhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccC-CCCCCCCcCCcccccc-
Q 043587 183 LSLSFQHIEKLPET-LCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMP-VGIGRLTGLRTLGEFT- 258 (285)
Q Consensus 183 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~- 258 (285)
|++++|.++.+|+. ++++++|++|++++|...+ ..|..++.+++|++|++++|...+.+| ..++.+++|++|++++
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 99999999988765 9999999999999998433 356789999999999999998666776 5799999999999998
Q ss_pred --ccCCccccccCCcCCCceecccC
Q 043587 259 --KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 259 --~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
....+..++.+++|+.|++....
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSB
T ss_pred cccccChhhhhccccCceEecccCc
Confidence 45577889999999999987654
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=1.2e-16 Score=148.04 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=122.0
Q ss_pred CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.++++|+++.+.+..++ ..|.++++|++|++++|. ...+++.+|.++++|++|+|+ +|++.+..+
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls-----~N~l~~l~~ 117 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILT-----GNPIQSLAL 117 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECG
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEcc-----CCcCCCCCH
Confidence 56788999999999888755 578999999999999998 556667778999999999999 888444344
Q ss_pred ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLT 249 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 249 (285)
..|.++.+|++|++++|.++.+|+ .++++++|++|++++|.... ..|..++.+++|++|++++|.+.+..|..++.+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 668899999999999999998875 57899999999999998333 3577888999999999999988876666666665
Q ss_pred cCCc
Q 043587 250 GLRT 253 (285)
Q Consensus 250 ~L~~ 253 (285)
+++.
T Consensus 198 ~l~~ 201 (635)
T 4g8a_A 198 QMPL 201 (635)
T ss_dssp TCTT
T ss_pred hhhh
Confidence 5543
No 73
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=8.7e-16 Score=132.31 Aligned_cols=168 Identities=16% Similarity=0.205 Sum_probs=101.4
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
..++++.|.+..+.+...+. +..+++|++|++.+|. ...+ + .+..+++|++|+++ +|. ...++.
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~------i~~~-~-~~~~l~~L~~L~l~-----~n~-i~~~~~- 127 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK------ITDI-S-ALQNLTNLRELYLN-----EDN-ISDISP- 127 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC------CCCC-G-GGTTCTTCSEEECT-----TSC-CCCCGG-
T ss_pred hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc------ccCc-h-HHcCCCcCCEEECc-----CCc-ccCchh-
Confidence 35566666666666555444 6666666777666665 2222 2 25666667777776 666 333433
Q ss_pred ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT 253 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 253 (285)
+..+++|++|++++|.....++.+..+++|++|++++|. +...+. +..+++|++|++++|.+. .++. +..+++|+.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~ 203 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE-DISP-LASLTSLHY 203 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCE
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccc-cccc-ccCCCccce
Confidence 666666777777666533233346666777777777766 444443 666777777777777555 3333 666777777
Q ss_pred ccccc-ccCCccccccCCcCCCceecccC
Q 043587 254 LGEFT-KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 254 L~l~~-~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
|++.+ .......+..+++|+.|+++++.
T Consensus 204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 204 FTAYVNQITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred eecccCCCCCCchhhcCCcCCEEEccCCc
Confidence 77766 22222337777788888777653
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=147.06 Aligned_cols=132 Identities=25% Similarity=0.250 Sum_probs=84.7
Q ss_pred HhcCCccceeeecccccccccCCCccc-ccccccCCCceEecccccccc-cchhhhcCCCccEEecCCCCCc-CcCcccc
Q 043587 145 FRELTSLRALDFCESYHSRSSLTPEIP-RNIEKLVHLRYLSLSFQHIEK-LPETLCELYNLETLDISGCFDL-EELPKGI 221 (285)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~-~~lp~~l 221 (285)
+..+++|+.|+++ +|.+.+..| ..+..+++|++|++++|.+.. .|..+.++++|++|++++|... +.+|..+
T Consensus 392 ~~~l~~L~~L~l~-----~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~ 466 (570)
T 2z63_A 392 FLGLEQLEHLDFQ-----HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466 (570)
T ss_dssp EETCTTCCEEECT-----TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ccccCCCCEEEcc-----CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh
Confidence 4444555555555 555333333 345666677777777776554 3445667777777777777633 3567677
Q ss_pred cccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587 222 GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 222 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+.+++|++|++++|.+.+..|..++.+++|++|++++ ....+..+..+++|+.|+++++.
T Consensus 467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 7777777777777777766677777777777777776 33334456777777777777643
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=4e-16 Score=134.43 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=80.9
Q ss_pred HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccccc
Q 043587 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKL 224 (285)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 224 (285)
+..+++|+.|+++ +|. ...++. +..+++|++|++++|.++.++ .+..+++|+.|++++|. +..+| .+..+
T Consensus 217 ~~~~~~L~~L~l~-----~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~~~~l 286 (347)
T 4fmz_A 217 VANMTRLNSLKIG-----NNK-ITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDIS-VLNNL 286 (347)
T ss_dssp GGGCTTCCEEECC-----SSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGC
T ss_pred hhcCCcCCEEEcc-----CCc-cCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCc-cCCCh-hhcCC
Confidence 5556666666666 666 333333 666677777777777766653 46667777777777776 55554 46677
Q ss_pred CCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceeccc
Q 043587 225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++|++|++++|.+.+..|..++.+++|++|++++ .......+..+++|+.|+++++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 7777777777776666666667777777777776 2222222667777777777665
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=143.48 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=86.4
Q ss_pred CceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 96 EKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
.+++.|+++.+.+...+ ..+.++++|++|++++|. ...+.+..|.++++|++|+++ +|. ...+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~N~-l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLS-----HNK-LVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECC-----SSC-CCEEECC-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecC-----CCc-eeecCcc-
Confidence 45555555555554432 345555556666665555 222234445555556666655 555 3344443
Q ss_pred cccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCcccccccCCC--ceeecCCCCC--CcccCCCCCCC
Q 043587 175 EKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELPKGIGKLVNM--KHLLNSRTSS--VRYMPVGIGRL 248 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~l~~~~~--~~~~p~~~~~l 248 (285)
.+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.+ .+..|..++.+
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccc
Confidence 45555666665555553 34555555566666665555 222 234445555 5556555555 44445555444
Q ss_pred CcCCccc--ccc----ccCCccccccCCcCCCceecccC
Q 043587 249 TGLRTLG--EFT----KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 249 ~~L~~L~--l~~----~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
.. +.+. +.+ .......+..+++|+.|+++++.
T Consensus 164 ~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 164 NT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp CE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred cc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 42 2222 221 11222345567888888877653
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=151.74 Aligned_cols=169 Identities=18% Similarity=0.183 Sum_probs=139.0
Q ss_pred eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-ccccccc
Q 043587 99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKL 177 (285)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l 177 (285)
+.++.+...+..+|. -.+++++|++++|. ...+.+..|.++++|++|+++ +|...+.+ |..++++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs-----~n~~~~~i~~~~f~~L 72 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELG-----SQYTPLTIDKEAFRNL 72 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEEC-----TTCCCCEECTTTTSSC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCC-----CCCCccccCHHHhcCC
Confidence 345566666666665 45899999999998 444456678999999999999 88657776 7889999
Q ss_pred CCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCccc--ccccCCCceeecCCCCCCcccC-CCCCCCCcCCc
Q 043587 178 VHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKG--IGKLVNMKHLLNSRTSSVRYMP-VGIGRLTGLRT 253 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 253 (285)
++|++|++++|.++.+ |..++++++|++|++++|...+..|.. ++++++|++|++++|.+.+..| ..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 9999999999998876 778999999999999999865556655 8999999999999998876544 57999999999
Q ss_pred ccccc---ccCCccccccC--CcCCCceecccC
Q 043587 254 LGEFT---KACRLESLKNL--EHLQICGIRRLG 281 (285)
Q Consensus 254 L~l~~---~~~~~~~l~~l--~~L~~L~i~~~~ 281 (285)
|++++ ....+..+..+ ++|+.|++.++.
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 99988 44456667776 789998887653
No 78
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=8.5e-16 Score=124.87 Aligned_cols=136 Identities=20% Similarity=0.275 Sum_probs=117.6
Q ss_pred CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.+++.|.+..+.+... +..+.++++|+.|++++|. ...+++..|..+++|++|+++ +|.+.+..+
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~L~~L~Ls-----~N~l~~l~~ 105 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQLTVLDLG-----TNQLTVLPS 105 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCCCCT
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCCcCEEECC-----CCcCCccCh
Confidence 4678999999999998874 6678999999999999998 455556668899999999999 888555455
Q ss_pred ccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcc
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRY 240 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~ 240 (285)
..+..+++|++|++++|.++.+|..+..+++|++|++++|+ +..+| ..+..+++|++|++++|++...
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 56789999999999999999999999999999999999998 66666 4588999999999999987644
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=2.2e-17 Score=140.80 Aligned_cols=167 Identities=10% Similarity=0.046 Sum_probs=111.3
Q ss_pred CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587 96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE 175 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~ 175 (285)
..++.+.+..+.+...+. ..+++|++|++++|. ...+.+..+..+++|++|+++ +|.+.+..+..+.
T Consensus 99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~~~ 165 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNK------ITMLRDLDEGCRSRVQYLDLK-----LNEIDTVNFAELA 165 (317)
T ss_dssp TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC------CCSGGGBCTGGGSSEEEEECT-----TSCCCEEEGGGGG
T ss_pred CCcCEEECCCCccCCcCc--cccCCCCEEECCCCC------CCCccchhhhccCCCCEEECC-----CCCCCcccHHHHh
Confidence 455666666665544322 235667777777776 333344456777778888887 7774444455553
Q ss_pred -ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 176 -KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 176 -~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
.+++|++|++++|.++.+|. ...+++|++|++++|. +..+|..+..+++|++|++++|.+. .+|..+..+++|+.|
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred hccCcCCEEECCCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 57778888888888777753 3357778888888877 6666667777788888888887666 567777777888888
Q ss_pred cccc---c-cCCccccccCCcCCCceec
Q 043587 255 GEFT---K-ACRLESLKNLEHLQICGIR 278 (285)
Q Consensus 255 ~l~~---~-~~~~~~l~~l~~L~~L~i~ 278 (285)
++++ . ...+..+..+++|+.|++.
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECC
Confidence 8776 2 3445556666667666655
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=2.6e-16 Score=134.16 Aligned_cols=173 Identities=15% Similarity=0.105 Sum_probs=111.7
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHH----------------HHhcCCccceeeec
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEE----------------LFRELTSLRALDFC 157 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~----------------~~~~~~~L~~L~L~ 157 (285)
...+++.|.+..+.+...++ +..+++|++|++++|. ...+++. ....+++|+.|+++
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~------l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 128 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE------EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC
T ss_pred CCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc------cccccCCCCcCEEECCCCccCCcCccccCCCCEEECC
Confidence 34566666666666554333 6666666666666665 1111000 00112334444444
Q ss_pred ccccccccCCCcccccccccCCCceEecccccccccc-hhh-hcCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587 158 ESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP-ETL-CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT 235 (285)
Q Consensus 158 ~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp-~~i-~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 235 (285)
+|.+.+..+..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|. ++.+|. ...+++|++|++++|
T Consensus 129 -----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 129 -----NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN 201 (317)
T ss_dssp -----SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS
T ss_pred -----CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCC
Confidence 56644444556777888888888888877654 344 367888888888887 666653 345888888888888
Q ss_pred CCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587 236 SSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 236 ~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
.+. .+|..+..+++|++|++++ -...+..+..+++|+.|+++++.
T Consensus 202 ~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 202 KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 776 4566688888888888887 33455667888888888887754
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=1.8e-16 Score=146.76 Aligned_cols=158 Identities=20% Similarity=0.161 Sum_probs=124.9
Q ss_pred EEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCc
Q 043587 102 MLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLR 181 (285)
Q Consensus 102 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~ 181 (285)
+........+|..+. +++++|++++|. ...+++..|.++++|++|+|+ +|++.+..|.+|..+++|+
T Consensus 37 ~c~~~~l~~vP~~lp--~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls-----~N~i~~i~~~~f~~L~~L~ 103 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP--FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLS-----RCEIQTIEDGAYQSLSHLS 103 (635)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECTTTTTTCTTCC
T ss_pred ECCCCCcCccCCCCC--cCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECC-----CCcCCCcChhHhcCCCCCC
Confidence 333334444565442 479999999998 666667789999999999999 9985444466799999999
Q ss_pred eEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCc-ccCCCCCCCCcCCcccccc
Q 043587 182 YLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVR-YMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 182 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~ 258 (285)
+|+|++|+++.+|+ .+.++++|++|++++|+ +..+|. .++++++|++|++++|.+.. ..|..++.+++|++|++++
T Consensus 104 ~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp EEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 99999999999986 57899999999999998 666654 58999999999999998765 5678899999999999987
Q ss_pred ---ccCCccccccCCcCC
Q 043587 259 ---KACRLESLKNLEHLQ 273 (285)
Q Consensus 259 ---~~~~~~~l~~l~~L~ 273 (285)
....+..+..+++++
T Consensus 183 N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 183 NKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp SCCCEECGGGGHHHHTCT
T ss_pred ccccccccccccchhhhh
Confidence 333344455444443
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.8e-16 Score=131.59 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=117.0
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
...+++.|.+..+.+..++ .+..+++|++|++++|. ...+++ +..+++|++|+++ +|. ...+|..
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~------i~~~~~--l~~l~~L~~L~L~-----~N~-l~~l~~~ 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ------ISDLSP--LKDLTKLEELSVN-----RNR-LKNLNGI 103 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCSSCCEEECC-----SSC-CSCCTTC
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc------cCCChh--hccCCCCCEEECC-----CCc-cCCcCcc
Confidence 4568899999988877665 68889999999999998 444333 8889999999999 887 4445543
Q ss_pred ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT 253 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 253 (285)
.. .+|++|++++|.++.+| .++.+++|+.|++++|+ ++.+| .++.+++|++|++++|.+.+. ..+..+++|+.
T Consensus 104 ~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp CC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 33 88999999999998876 58899999999999998 67776 688999999999999988754 67888999999
Q ss_pred ccccc
Q 043587 254 LGEFT 258 (285)
Q Consensus 254 L~l~~ 258 (285)
|++++
T Consensus 177 L~l~~ 181 (263)
T 1xeu_A 177 IDLTG 181 (263)
T ss_dssp EEEEE
T ss_pred EeCCC
Confidence 99887
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=9.4e-16 Score=140.63 Aligned_cols=106 Identities=22% Similarity=0.248 Sum_probs=78.1
Q ss_pred CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
..+.+++.|+++.+.+...+ ..+.++++|++|++++|. ...+.+..|.++++|++|+++ +|. ...+|
T Consensus 49 ~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~-l~~lp 116 (562)
T 3a79_B 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVS-----HNR-LQNIS 116 (562)
T ss_dssp TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECT-----TSC-CCEEC
T ss_pred CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECC-----CCc-CCccC
Confidence 35678899999998887754 578889999999999887 444456668888888888888 666 44566
Q ss_pred ccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCF 212 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 212 (285)
.. .+++|++|++++|.++.+| ..++++++|++|++++|.
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 55 6777777777777766543 566677777777666664
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.5e-16 Score=119.76 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=82.5
Q ss_pred CCCceeEEEEEecCCc--ccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 94 LDEKVRHLMLIIGEGA--IFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
.+.+++.|.+..+.+. .++..+..+++|++|++++|. ...+ ..+..+++|++|+++ +|.+.+.+|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls-----~N~l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISV--SNLPKLPKLKKLELS-----ENRIFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCCC--SSCCCCSSCCEEEEE-----SCCCCSCCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCCh--hhhccCCCCCEEECc-----CCcCchHHH
Confidence 4566777777776665 455566667777777777766 2222 335666677777776 666444455
Q ss_pred ccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcCcc----cccccCCCceeecCCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEELPK----GIGKLVNMKHLLNSRTSSV 238 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~~~~~~ 238 (285)
..+..+++|++|++++|.++.+| ..+..+++|++|++++|. +...|. .+..+++|++|++++|...
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55556677777777777766654 456666777777777766 444544 5666677777777666443
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=6.7e-16 Score=140.21 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=88.7
Q ss_pred hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccc-
Q 043587 116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEK- 192 (285)
Q Consensus 116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~- 192 (285)
..+++|++|++++|. +.+. .+..+..+++|++|+++ +|++.+ .+|..++.+++|++|++++|.++.
T Consensus 321 ~~l~~L~~L~Ls~n~-----l~~~-~~~~~~~l~~L~~L~L~-----~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-----LTDT-VFENCGHLTELETLILQ-----MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SSCCCCCEEECCSSC-----CCTT-TTTTCCCCSSCCEEECC-----SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred hhCCcccEEEeECCc-----cChh-hhhhhccCCCCCEEEcc-----CCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 455666666666665 2222 23445666666666666 555333 344556666666666666666665
Q ss_pred cchh-hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccc-ccc
Q 043587 193 LPET-LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLES-LKN 268 (285)
Q Consensus 193 lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~-l~~ 268 (285)
+|.. +..+++|+.|++++|...+..|..+. ++|++|++++|.+. .+|..+..+++|++|++++ -...+.. +..
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhcc
Confidence 5543 45566666666666664444444432 56667777666555 6666666777777777766 2233333 666
Q ss_pred CCcCCCceecccC
Q 043587 269 LEHLQICGIRRLG 281 (285)
Q Consensus 269 l~~L~~L~i~~~~ 281 (285)
+++|+.|+++++.
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 6677777666543
No 86
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=3.1e-15 Score=134.12 Aligned_cols=124 Identities=24% Similarity=0.333 Sum_probs=61.8
Q ss_pred HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccccc
Q 043587 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKL 224 (285)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 224 (285)
+..+++|++|+++ +|.+.+ ++. +..+++|++|++++|.++.+|. +..+++|+.|++++|. +..++. ++.+
T Consensus 239 l~~l~~L~~L~l~-----~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l 308 (466)
T 1o6v_A 239 LASLTNLTDLDLA-----NNQISN-LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISP-ISNL 308 (466)
T ss_dssp GGGCTTCSEEECC-----SSCCCC-CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGC
T ss_pred hhcCCCCCEEECC-----CCcccc-chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchh-hcCC
Confidence 4445555555555 444222 221 4555555555555555555543 5555555555555555 333432 5555
Q ss_pred CCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceeccc
Q 043587 225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++|++|++++|.+.+..| ++.+++|++|++++ ....+..+..+++|+.|+++++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC
Confidence 555555555555544332 44555555555554 2122234455555555555443
No 87
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=2.4e-15 Score=134.82 Aligned_cols=166 Identities=20% Similarity=0.319 Sum_probs=84.5
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
...+++.|++..+.+...+. +.++++|++|++.+|. ...+++ +..+++|++|+++ +|. ...++.
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~------l~~~~~--~~~l~~L~~L~L~-----~n~-l~~~~~- 129 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ------IADITP--LANLTNLTGLTLF-----NNQ-ITDIDP- 129 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECC-----SSC-CCCCGG-
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc------cccChh--hcCCCCCCEEECC-----CCC-CCCChH-
Confidence 35567777777666665544 6666677777776665 222222 5666666666666 555 333332
Q ss_pred ccccCCCceEecccccccccch--------------------hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecC
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPE--------------------TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNS 233 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 233 (285)
+..+++|++|++++|.++.+|. .++++++|+.|++++|. +..++ .+..+++|++|+++
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIAT 207 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECC
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEec
Confidence 5555666666666555444331 13344555555555554 33333 34555555555555
Q ss_pred CCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceecc
Q 043587 234 RTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRR 279 (285)
Q Consensus 234 ~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~ 279 (285)
+|.+.+..| ++.+++|++|++++ .......+..+++|+.|++++
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence 554443322 44444455554444 111223344444444444443
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=2.4e-15 Score=124.83 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=94.8
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL 193 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l 193 (285)
.+..+++|++|++++|. ...+ + .+..+++|++|+++ +|. +..++. +..+++|++|++++|.++.+
T Consensus 36 ~~~~l~~L~~L~l~~n~------i~~l-~-~l~~l~~L~~L~L~-----~N~-i~~~~~-l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN------IQSL-A-GMQFFTNLKELHLS-----HNQ-ISDLSP-LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp CHHHHTTCSEEECTTSC------CCCC-T-TGGGCTTCCEEECC-----SSC-CCCCGG-GTTCSSCCEEECCSSCCSCC
T ss_pred chhhcCcCcEEECcCCC------cccc-h-HHhhCCCCCEEECC-----CCc-cCCChh-hccCCCCCEEECCCCccCCc
Confidence 45677777777777776 3333 2 36677777777777 666 334443 67777777777777777766
Q ss_pred chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcC
Q 043587 194 PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHL 272 (285)
Q Consensus 194 p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L 272 (285)
|.. .. ++|+.|++++|. ++.+| .++.+++|++|++++|.+.+ +| .++.+++|++|++++ .......+..+++|
T Consensus 101 ~~~-~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L 174 (263)
T 1xeu_A 101 NGI-PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174 (263)
T ss_dssp TTC-CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred Ccc-cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence 642 23 677777777776 55554 47777777777777776653 33 567777777777776 22222556677777
Q ss_pred CCceeccc
Q 043587 273 QICGIRRL 280 (285)
Q Consensus 273 ~~L~i~~~ 280 (285)
+.|++++.
T Consensus 175 ~~L~l~~N 182 (263)
T 1xeu_A 175 NWIDLTGQ 182 (263)
T ss_dssp CEEEEEEE
T ss_pred CEEeCCCC
Confidence 77776654
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=3.7e-16 Score=140.86 Aligned_cols=174 Identities=14% Similarity=0.038 Sum_probs=120.2
Q ss_pred CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccc------------
Q 043587 95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYH------------ 161 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~------------ 161 (285)
.++++.|.+.++.+... +..+..+++|++|++++|. +.+. ++ +..+++|++|++++|.+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~-~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYET-LD--LESLSTLRTLDLNNNYVQELLVGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-----CEEE-EE--CTTCTTCCEEECCSSEEEEEEECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-----CCCC-cc--cccCCCCCEEEecCCcCCCCCCCCCcCEE
Confidence 34677777777777663 3567777777777777776 2322 22 66777777777773321
Q ss_pred --ccccCCCcccccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCccccc-ccCCCceeecCCCCC
Q 043587 162 --SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIG-KLVNMKHLLNSRTSS 237 (285)
Q Consensus 162 --~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~ 237 (285)
++|.+.+..+ ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 2444222222 2357788888888888866 44678888999999999885555666665 788999999999887
Q ss_pred CcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587 238 VRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 238 ~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
.+. |. ...+++|+.|++++ -...+..+..+++|+.|+++++.
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 754 33 44688999999888 33344558888899999888753
No 90
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=122.06 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=122.3
Q ss_pred eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhH-HHHHHhcCCccceeeecccccccccCCCccccccccc
Q 043587 99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEI-LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL 177 (285)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l 177 (285)
+.+.+..+.+..+|..+. ..++.|++++|. ...+ ++..|..+++|++|+++ +|.+.+..+..+..+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~-----~N~i~~i~~~~~~~l 80 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFS-----NNKITDIEEGAFEGA 80 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECC-----SSCCCEECTTTTTTC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc------CCccCchhhhccCCCCCEEECC-----CCcCCEECHHHhCCC
Confidence 466777777766666543 467899999998 3333 23457899999999999 888555555689999
Q ss_pred CCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccc
Q 043587 178 VHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGE 256 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 256 (285)
++|++|++++|.++.+|. .+.++++|++|++++|...+..|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 999999999999998875 4789999999999999955555788999999999999999998877899999999999999
Q ss_pred cc
Q 043587 257 FT 258 (285)
Q Consensus 257 ~~ 258 (285)
.+
T Consensus 161 ~~ 162 (220)
T 2v70_A 161 LA 162 (220)
T ss_dssp CS
T ss_pred cC
Confidence 87
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3.8e-15 Score=125.45 Aligned_cols=145 Identities=19% Similarity=0.298 Sum_probs=124.9
Q ss_pred CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
....+++.|.+..+.+...+. +..+++|++|++++|. ...+ +. +..+++|++|+++ +|. ...+ .
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~------l~~~-~~-l~~l~~L~~L~L~-----~n~-i~~~-~ 128 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK------VKDL-SS-LKDLKKLKSLSLE-----HNG-ISDI-N 128 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC------CCCG-GG-GTTCTTCCEEECT-----TSC-CCCC-G
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc------CCCC-hh-hccCCCCCEEECC-----CCc-CCCC-h
Confidence 456799999999999887666 8999999999999998 4443 33 8899999999999 888 4445 4
Q ss_pred cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
.+..+++|++|++++|.++.+ +.++.+++|+.|++++|. +..++. +..+++|++|++++|.+. .+| .+..+++|+
T Consensus 129 ~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~-~l~-~l~~l~~L~ 203 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLD 203 (291)
T ss_dssp GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCC-CCh-hhccCCCCC
Confidence 688999999999999999988 578999999999999998 666765 999999999999999876 455 489999999
Q ss_pred cccccc
Q 043587 253 TLGEFT 258 (285)
Q Consensus 253 ~L~l~~ 258 (285)
.|++++
T Consensus 204 ~L~l~~ 209 (291)
T 1h6t_A 204 VLELFS 209 (291)
T ss_dssp EEEEEE
T ss_pred EEECcC
Confidence 999988
No 92
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=8.2e-17 Score=147.44 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=120.1
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCC--------CCCchhhHHHHHHhcCC-----------------
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSD--------HSSLNGEILEELFRELT----------------- 149 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------~~~l~~~~~~~~~~~~~----------------- 149 (285)
..++++|.++.+.+..+|..++.+++|+.|++.++... .....+. .+..+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhh
Confidence 44566777777777778888889999998887555200 0000111 223233332
Q ss_pred ---------------ccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCc
Q 043587 150 ---------------SLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDL 214 (285)
Q Consensus 150 ---------------~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 214 (285)
.|++|+++ +|. ...+|. ++.+++|++|++++|.++.+|..++++++|++|++++|. +
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls-----~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l 498 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLA-----HKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-L 498 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECT-----TSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-C
T ss_pred hhhhhcccccccCccCceEEEec-----CCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-C
Confidence 35566666 777 445775 888888999999988888888888888899999998887 6
Q ss_pred CcCcccccccCCCceeecCCCCCCccc-CCCCCCCCcCCcccccc--ccCCc----cccccCCcCCCce
Q 043587 215 EELPKGIGKLVNMKHLLNSRTSSVRYM-PVGIGRLTGLRTLGEFT--KACRL----ESLKNLEHLQICG 276 (285)
Q Consensus 215 ~~lp~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~--~~~~~----~~l~~l~~L~~L~ 276 (285)
+.+| .++.+++|++|++++|.+.+.. |..++.+++|+.|++++ -...+ ..+..+++|+.|+
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6677 7888888999999888887655 88888888899888887 11111 2234477777765
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=2.9e-15 Score=137.36 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=101.6
Q ss_pred hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccc-
Q 043587 116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEK- 192 (285)
Q Consensus 116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~- 192 (285)
..+++|++|++++|. +.+. .+..+..+++|++|+++ +|.+.+ .+|..++.+++|++|++++|.++.
T Consensus 350 ~~l~~L~~L~l~~n~-----l~~~-~~~~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-----FTDS-VFQGCSTLKRLQTLILQ-----RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SSCCCCCEEECCSSC-----CCTT-TTTTCCSCSSCCEEECC-----SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cCCCCceEEECCCCc-----cccc-hhhhhcccCCCCEEECC-----CCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 456677777777776 2332 34446677777777777 666333 234556677777777777777665
Q ss_pred cchh-hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccc-ccc
Q 043587 193 LPET-LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLES-LKN 268 (285)
Q Consensus 193 lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~-l~~ 268 (285)
+|.. +..+++|+.|++++|...+..|..+. ++|++|++++|.+. .+|..+..+++|++|++++ -...+.. +..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 6643 55667777777777764455554433 57888888888665 6777777888888888887 2234444 788
Q ss_pred CCcCCCceecccC
Q 043587 269 LEHLQICGIRRLG 281 (285)
Q Consensus 269 l~~L~~L~i~~~~ 281 (285)
+++|+.|++++..
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 8888888887654
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=4.9e-15 Score=132.46 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=92.3
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
..+++.|.+..+.+..++ +..+++|++|++++|. ...+ + +..+++|++|+++ +|.+.+ +| +
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~------l~~~-~--~~~l~~L~~L~L~-----~N~l~~-l~--~ 123 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK------LTNL-D--VTPLTKLTYLNCD-----TNKLTK-LD--V 123 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC------CSCC-C--CTTCTTCCEEECC-----SSCCSC-CC--C
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC------Ccee-e--cCCCCcCCEEECC-----CCcCCe-ec--C
Confidence 445555555555554432 5555566666665555 2221 1 4555666666666 555322 33 5
Q ss_pred cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
+.+++|++|++++|.++.++ ++.+++|++|++++|..++.+ .++.+++|++|++++|.+.+ +| ++.+++|+.|
T Consensus 124 ~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L 196 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRL 196 (457)
T ss_dssp TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEE
T ss_pred CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEE
Confidence 55666666666666666553 556666666666666445544 35666777777777776653 44 6677777777
Q ss_pred ccccccCCccccccCCcCCCceeccc
Q 043587 255 GEFTKACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 255 ~l~~~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
++++..-.-..++.+++|+.|+++++
T Consensus 197 ~l~~N~l~~~~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 197 NCDTNNITKLDLNQNIQLTFLDCSSN 222 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCSEEECCSS
T ss_pred ECcCCcCCeeccccCCCCCEEECcCC
Confidence 77761111114677777777777664
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=2.2e-15 Score=121.69 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=117.7
Q ss_pred cEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc-chhhhcC
Q 043587 122 RSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCEL 200 (285)
Q Consensus 122 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l 200 (285)
+.++..++. ...++.. + .++++.|+++ +|.+.+..+..+..+++|++|++++|.++.+ |..+.++
T Consensus 14 ~~v~c~~~~------l~~iP~~-l--~~~l~~L~l~-----~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 14 NIVDCRGKG------LTEIPTN-L--PETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79 (220)
T ss_dssp TEEECTTSC------CSSCCSS-C--CTTCCEEECC-----SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEcCCCC------cCcCCCc-c--CcCCCEEECC-----CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence 566777766 3343221 2 2689999999 8885544456889999999999999999977 6789999
Q ss_pred CCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCce
Q 043587 201 YNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICG 276 (285)
Q Consensus 201 ~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~ 276 (285)
++|++|++++|. +..+|.. +..+++|++|++++|.+.+..|..|..+++|+.|++++ ....+..+..+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 999999999998 6677765 68899999999999999887788999999999999998 333445688899999999
Q ss_pred ecccC
Q 043587 277 IRRLG 281 (285)
Q Consensus 277 i~~~~ 281 (285)
+.+..
T Consensus 159 L~~N~ 163 (220)
T 2v9t_B 159 LAQNP 163 (220)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 88754
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=9e-16 Score=133.19 Aligned_cols=153 Identities=21% Similarity=0.169 Sum_probs=91.6
Q ss_pred CCCceeEEEEEecCCccccc-chh-ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPV-STR-RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p 171 (285)
.+..++.|.++.+.+..++. .+. ++++|++|++++|. ...+++..|..+++|++|+|+ +|.+....+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls-----~N~l~~~~~ 105 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH------LNFISSEAFVPVPNLRYLDLS-----SNHLHTLDE 105 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SSCCCEECT
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc------CCccChhhccCCCCCCEEECC-----CCcCCcCCH
Confidence 45556677777776665333 344 66777777777776 334444556667777777777 666333334
Q ss_pred ccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccc----cccCCCceeecCCCCCCcccCCCCC
Q 043587 172 RNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGI----GKLVNMKHLLNSRTSSVRYMPVGIG 246 (285)
Q Consensus 172 ~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l----~~l~~L~~L~l~~~~~~~~~p~~~~ 246 (285)
..+..+.+|++|++++|.++.+ |..+..+++|+.|++++|. +..+|..+ ..+++|++|++++|.+....+..+.
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 184 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence 4566677777777777776655 3456667777777777776 55565543 4567777777777765532223444
Q ss_pred CCCc--CCcccccc
Q 043587 247 RLTG--LRTLGEFT 258 (285)
Q Consensus 247 ~l~~--L~~L~l~~ 258 (285)
.++. |+.|++.+
T Consensus 185 ~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 185 KLPAWVKNGLYLHN 198 (361)
T ss_dssp HSCHHHHTTEECCS
T ss_pred hccHhhcceEEecC
Confidence 5554 25555554
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=3.8e-16 Score=140.78 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=108.6
Q ss_pred CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587 96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE 175 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~ 175 (285)
.+++.|.+..+.+...+. ..+++|++|++++|. ...+.+..+..+++|++|+++ +|.+.+..|..+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~l~ 165 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNK------ITMLRDLDEGCRSRVQYLDLK-----LNEIDTVNFAELA 165 (487)
T ss_dssp TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSC------CCSGGGBCGGGGSSEEEEECT-----TSCCCEEEGGGGG
T ss_pred CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCC------CCCCCchhhcCCCCCCEEECC-----CCCCCCcChHHHh
Confidence 456666666665554332 245677777777776 333345456777777777777 7775555566665
Q ss_pred -ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 176 -KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 176 -~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
.+++|++|++++|.++.+|. ...+++|++|++++|. +..+|+.++.+++|+.|++++|.+. .+|..++.+++|+.|
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEE
Confidence 57777777777777776653 3457777777777776 5566666777777777777777666 467777777777777
Q ss_pred cccc---c-cCCccccccCCcCCCcee
Q 043587 255 GEFT---K-ACRLESLKNLEHLQICGI 277 (285)
Q Consensus 255 ~l~~---~-~~~~~~l~~l~~L~~L~i 277 (285)
++++ . ...+..+..++.|+.+++
T Consensus 243 ~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp ECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred EcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 7776 1 233444566666665554
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=4.7e-16 Score=136.09 Aligned_cols=177 Identities=15% Similarity=0.073 Sum_probs=127.5
Q ss_pred CCCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHH----HHhcC---------Cccceee
Q 043587 94 LDEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEE----LFREL---------TSLRALD 155 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~----~~~~~---------~~L~~L~ 155 (285)
...+++.|.+..+.+.. ++..+..+++|++|++++|. .....+. .+..+ ++|++|+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG------LGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC------CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC------CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 35678888888887765 45577888889999998887 3322222 23334 8889999
Q ss_pred ecccccccccCC-Cccc---ccccccCCCceEeccccccc------ccchhhhcCCCccEEecCCCCCc----CcCcccc
Q 043587 156 FCESYHSRSSLT-PEIP---RNIEKLVHLRYLSLSFQHIE------KLPETLCELYNLETLDISGCFDL----EELPKGI 221 (285)
Q Consensus 156 L~~~~~~~~~~~-~~~p---~~i~~l~~L~~L~l~~~~l~------~lp~~i~~l~~L~~L~l~~~~~~----~~lp~~l 221 (285)
++ +|.+. ..+| ..+..+++|++|++++|.++ -+|..+..+++|++|++++|... ..+|..+
T Consensus 166 L~-----~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 166 CG-----RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CC-----SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CC-----CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 98 77744 2344 46667888999999998877 23337778888999999988832 5677788
Q ss_pred cccCCCceeecCCCCCCcc----cCCCC--CCCCcCCcccccc---cc----CCcccc-ccCCcCCCceecccC
Q 043587 222 GKLVNMKHLLNSRTSSVRY----MPVGI--GRLTGLRTLGEFT---KA----CRLESL-KNLEHLQICGIRRLG 281 (285)
Q Consensus 222 ~~l~~L~~L~l~~~~~~~~----~p~~~--~~l~~L~~L~l~~---~~----~~~~~l-~~l~~L~~L~i~~~~ 281 (285)
..+++|++|++++|.+.+. +|..+ +.+++|++|++++ .. ..+..+ .++++|+.|+++++.
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8888999999998877654 45555 4488889998887 22 245555 567888888888764
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.5e-15 Score=114.85 Aligned_cols=126 Identities=28% Similarity=0.314 Sum_probs=71.2
Q ss_pred cccccEEeecCCCCCCCCch-hhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc-cch
Q 043587 118 IKRMRSLLIDGGRSDHSSLN-GEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-LPE 195 (285)
Q Consensus 118 l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~-lp~ 195 (285)
.++|+.|++++|. +. +.+ +..+..+++|++|+++ +|.+.+ + ..++.+++|++|++++|.++. +|.
T Consensus 16 ~~~l~~L~l~~n~-----l~~~~~-~~~~~~l~~L~~L~l~-----~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSR-----SNEGKL-EGLTDEFEELEFLSTI-----NVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCB-----CBTTBC-CSCCTTCTTCCEEECT-----TSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred CccCeEEEccCCc-----CChhHH-HHHHhhcCCCcEEECc-----CCCCCC-c-hhhhcCCCCCEEECCCCcccchHHH
Confidence 3566666666665 22 132 3335566666666666 555332 2 455666666666666666665 555
Q ss_pred hhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccC---CCCCCCCcCCccccc
Q 043587 196 TLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMP---VGIGRLTGLRTLGEF 257 (285)
Q Consensus 196 ~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~l~ 257 (285)
.++.+++|++|++++|. ++.+| ..++.+++|++|++++|.+.+..+ ..++.+++|+.|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55556666666666665 44433 556666666666666665543222 245556666665554
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=6.6e-16 Score=116.90 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=83.7
Q ss_pred CCccceeeecccccccccCC-CcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587 148 LTSLRALDFCESYHSRSSLT-PEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVN 226 (285)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~~~-~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 226 (285)
.++|+.|+++ +|.+. +.+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|...+.+|..++.+++
T Consensus 16 ~~~l~~L~l~-----~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLD-----NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECT-----TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEcc-----CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 4567777777 66644 46676667777777777777777766 56677777777777777743336666666777
Q ss_pred CceeecCCCCCCcc-cCCCCCCCCcCCcccccc--ccCCc----cccccCCcCCCceec
Q 043587 227 MKHLLNSRTSSVRY-MPVGIGRLTGLRTLGEFT--KACRL----ESLKNLEHLQICGIR 278 (285)
Q Consensus 227 L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~--~~~~~----~~l~~l~~L~~L~i~ 278 (285)
|++|++++|.+.+. .|..++.+++|++|++++ -...+ ..+..+++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777766542 336677777777777776 11122 346777777777664
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=7e-15 Score=138.50 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587 95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i 174 (285)
...++++.+..+.....+..+.....|+.+.+......... .. +++..+..++.|+.|+|+ +|. +..+|..+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~-~~~~~~~~l~~L~~L~Ls-----~n~-l~~l~~~~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR-MV-MPKDSKYDDQLWHALDLS-----NLQ-IFNISANI 243 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECT-----TSC-CSCCCGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc-ee-cChhhhccCCCCcEEECC-----CCC-CCCCChhh
Confidence 44577777776666544444434444444433322100000 11 346667788888888888 777 45777777
Q ss_pred cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587 175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 254 (285)
..+++|++|+|++|.++.+|..++++++|++|+|++|. +..+|..++.|++|++|++++|.+. .+|..|+.+++|++|
T Consensus 244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 78888888888888888888888888888888888887 5578888888888888888888664 778888888888888
Q ss_pred cccc
Q 043587 255 GEFT 258 (285)
Q Consensus 255 ~l~~ 258 (285)
++++
T Consensus 322 ~L~~ 325 (727)
T 4b8c_D 322 GVEG 325 (727)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 8876
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1.4e-15 Score=131.97 Aligned_cols=168 Identities=21% Similarity=0.170 Sum_probs=127.1
Q ss_pred eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHh-cCCccceeeecccccccccCCCccccccccc
Q 043587 99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFR-ELTSLRALDFCESYHSRSSLTPEIPRNIEKL 177 (285)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l 177 (285)
+.+.+..+.+..+|..+. ..++.|++++|. ...+++..|. .+++|+.|+|+ +|++.+..+..+..+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~-----~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLS-----HNHLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC------CCEECTTSSSSCCTTCCEEECC-----SSCCCEECTTTTTTC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC------CCccChhhhhhcccccCEEECC-----CCcCCccChhhccCC
Confidence 456666676666665443 468999999998 4454566566 89999999999 888555455678999
Q ss_pred CCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCC-C---CCCCcCC
Q 043587 178 VHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG-I---GRLTGLR 252 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~-~---~~l~~L~ 252 (285)
++|++|++++|.++.+|. .+.++++|++|++++|......|..+..+++|++|++++|.+. .+|.. + ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCC
Confidence 999999999999998875 5788999999999999854445778999999999999999877 45544 3 6799999
Q ss_pred cccccc---ccCCccccccCCc--CCCceeccc
Q 043587 253 TLGEFT---KACRLESLKNLEH--LQICGIRRL 280 (285)
Q Consensus 253 ~L~l~~---~~~~~~~l~~l~~--L~~L~i~~~ 280 (285)
.|++++ ....+..+..++. |+.|++.+.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 999988 3223345666665 367777654
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=3.7e-15 Score=115.08 Aligned_cols=126 Identities=28% Similarity=0.310 Sum_probs=80.9
Q ss_pred cccccEEeecCCCCCCCCch-hhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc-cch
Q 043587 118 IKRMRSLLIDGGRSDHSSLN-GEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-LPE 195 (285)
Q Consensus 118 l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~-lp~ 195 (285)
.++|+.|++++|. +. +.+ +..+..+++|++|+++ +|.+. .+ ..+..+++|++|++++|.++. +|.
T Consensus 23 ~~~L~~L~l~~n~-----l~~~~i-~~~~~~l~~L~~L~l~-----~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCK-----SNDGKI-EGLTAEFVNLEFLSLI-----NVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp TTSCSEEECCSCB-----CBTTBC-SSCCGGGGGCCEEEEE-----SSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred cccCCEEECCCCC-----CChhhH-HHHHHhCCCCCEEeCc-----CCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHH
Confidence 3667777777776 22 233 3335667777777777 66633 33 566677777777777777665 555
Q ss_pred hhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccCC----CCCCCCcCCcccccc
Q 043587 196 TLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMPV----GIGRLTGLRTLGEFT 258 (285)
Q Consensus 196 ~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~ 258 (285)
.+..+++|++|++++|. +..+| ..+..+++|++|++++|.+. ..|. .+..+++|+.|++.+
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEE
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCC
Confidence 55567777777777776 55554 56677777777777777665 3333 566677777776665
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=1.2e-14 Score=129.99 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=89.8
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
...+++.|.+..+.+...+ +..+++|++|++++|. ...+ + +..+++|++|+++ +|.+.+ ++
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~------l~~l-~--~~~l~~L~~L~l~-----~N~l~~-l~-- 143 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK------LTKL-D--VSQNPLLTYLNCA-----RNTLTE-ID-- 143 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC------CSCC-C--CTTCTTCCEEECT-----TSCCSC-CC--
T ss_pred cCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc------CCee-c--CCCCCcCCEEECC-----CCccce-ec--
Confidence 3456666666666655442 5566666666666665 2222 1 5566666666666 555333 32
Q ss_pred ccccCCCceEeccccc-ccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 174 IEKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
++.+++|++|++++|. +..+ .++.+++|+.|++++|. ++.+| ++.+++|++|++++|.+.+. .++.+++|+
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~ 215 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLT 215 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCS
T ss_pred cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCcCCee---ccccCCCCC
Confidence 5566666666666663 4444 25566666666666665 44454 55666666666666655532 256666666
Q ss_pred cccccc-ccCCccccccCCcCCCceeccc
Q 043587 253 TLGEFT-KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 253 ~L~l~~-~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
.|++++ .-..+. ++.+++|+.|+++++
T Consensus 216 ~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 216 FLDCSSNKLTEID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EEECCSSCCSCCC-CTTCTTCSEEECCSS
T ss_pred EEECcCCcccccC-ccccCCCCEEEeeCC
Confidence 666665 111111 556666666665543
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=7.6e-16 Score=145.07 Aligned_cols=122 Identities=22% Similarity=0.218 Sum_probs=98.5
Q ss_pred cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccc
Q 043587 111 FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHI 190 (285)
Q Consensus 111 ~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l 190 (285)
.+..+..+.+|+.|++++|. ...+++. +..+++|++|+|+ +|.+. .+|..++.+++|++|+|++|.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~------l~~l~~~-~~~l~~L~~L~Ls-----~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ------IFNISAN-IFKYDFLTRLYLN-----GNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ------CCCCCCEEECTTSC------CSCCCGG-GGGCCSCSCCBCT-----TSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred ChhhhccCCCCcEEECCCCC------CCCCChh-hcCCCCCCEEEee-----CCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 45677888999999999998 3354333 5589999999999 88844 8888899999999999999999
Q ss_pred cccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCC
Q 043587 191 EKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIG 246 (285)
Q Consensus 191 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~ 246 (285)
+.+|..++.+++|++|+|++|. ++.+|..|+.+++|++|++++|.+.+..|..+.
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 9999999999999999999997 778898899999999999999988876665443
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.1e-14 Score=125.75 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=31.5
Q ss_pred CCCCceeEEEEEecCCccccc-chhccccccEEeecCCC
Q 043587 93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGR 130 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 130 (285)
..+.+++.|.++.+.+..++. +|.++++|++|++++|.
T Consensus 27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 456788999999998887664 68889999999998887
No 107
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=6.1e-15 Score=114.81 Aligned_cols=128 Identities=21% Similarity=0.195 Sum_probs=96.5
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcC-CccceeeecccccccccCCCcccccccccCCCceEecccccccc
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFREL-TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK 192 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~ 192 (285)
.+.++.+|+.|++.+|. ...+ +. +..+ ++|++|+++ +|. ...+ ..++.+++|++|++++|.++.
T Consensus 14 ~~~~~~~L~~L~l~~n~------l~~i-~~-~~~~~~~L~~L~Ls-----~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK------IPVI-EN-LGATLDQFDAIDFS-----DNE-IRKL-DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp EEECTTSCEEEECTTSC------CCSC-CC-GGGGTTCCSEEECC-----SSC-CCEE-CCCCCCSSCCEEECCSSCCCE
T ss_pred hcCCcCCceEEEeeCCC------Cchh-HH-hhhcCCCCCEEECC-----CCC-CCcc-cccccCCCCCEEECCCCcccc
Confidence 44567788888888887 3333 33 3334 488888888 777 4444 577888888888888888888
Q ss_pred cchhh-hcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCCCCcccCCC----CCCCCcCCcccccc
Q 043587 193 LPETL-CELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTSSVRYMPVG----IGRLTGLRTLGEFT 258 (285)
Q Consensus 193 lp~~i-~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~L~l~~ 258 (285)
+|+.+ +.+++|++|++++|. ++.+|. .+..+++|++|++++|++. ..|.. ++.+++|+.|++..
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred cCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 87655 788888888888887 677776 7788888888888888775 56664 77888888888776
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=7.5e-15 Score=115.97 Aligned_cols=131 Identities=20% Similarity=0.193 Sum_probs=101.6
Q ss_pred eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHH-HHhcCCccceeeecccccccccCCCccccccccc
Q 043587 99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEE-LFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL 177 (285)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l 177 (285)
+.+.+..+.+..+|..+.. ++++|++.+|. ...+++. .|..+++|++|+++ +|.+.+..|..+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE------LGRISSDGLFGRLPHLVKLELK-----RNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECC-----SSCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc------CCccCCccccccCCCCCEEECC-----CCCCCCcCHhHcCCc
Confidence 4566666666666665433 88999999987 3333332 47889999999999 888666668888899
Q ss_pred CCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccC
Q 043587 178 VHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMP 242 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p 242 (285)
++|++|++++|.++.++. .+.++++|++|++++|+..+..|..+..+++|++|++++|++....+
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999999999887765 47789999999999998555567788899999999999998775443
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=4.3e-14 Score=130.29 Aligned_cols=145 Identities=19% Similarity=0.303 Sum_probs=123.8
Q ss_pred CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
....+++.|.+..+.+..++. +..+++|+.|++++|. ...+ + .+..+++|+.|+|+ +|.+ ..++
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~------l~~l-~-~l~~l~~L~~L~Ls-----~N~l-~~l~- 125 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK------IKDL-S-SLKDLKKLKSLSLE-----HNGI-SDIN- 125 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC------CCCC-T-TSTTCTTCCEEECT-----TSCC-CCCG-
T ss_pred ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC------CCCC-h-hhccCCCCCEEEec-----CCCC-CCCc-
Confidence 457899999999998887665 8999999999999998 3333 3 38889999999999 8884 4444
Q ss_pred cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
.+..+++|+.|+|++|.++.+ +.++.+++|+.|+|++|. +..+++ +..+++|++|++++|.+.+ +| .+..+++|+
T Consensus 126 ~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD 200 (605)
T ss_dssp GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence 688999999999999999988 578999999999999998 666655 9999999999999998874 44 689999999
Q ss_pred cccccc
Q 043587 253 TLGEFT 258 (285)
Q Consensus 253 ~L~l~~ 258 (285)
.|++++
T Consensus 201 ~L~L~~ 206 (605)
T 1m9s_A 201 VLELFS 206 (605)
T ss_dssp EEECCS
T ss_pred EEEccC
Confidence 999988
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=4.6e-14 Score=111.41 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=100.6
Q ss_pred cEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc-cccccCCCceEeccccccccc-chhhhc
Q 043587 122 RSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR-NIEKLVHLRYLSLSFQHIEKL-PETLCE 199 (285)
Q Consensus 122 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~ 199 (285)
++++++++. ...++.. + ..++++|+++ +|.+.+..+. .++.+++|++|++++|.++.+ |..+++
T Consensus 11 ~~l~~s~~~------l~~ip~~-~--~~~l~~L~l~-----~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRG------LKEIPRD-I--PLHTTELLLN-----DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSC------CSSCCSC-C--CTTCSEEECC-----SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCC------cCcCccC-C--CCCCCEEECC-----CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 788998887 4454322 2 2389999999 8884443333 488999999999999999877 668899
Q ss_pred CCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 200 LYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 200 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
+++|++|++++|...+..|..+..+++|++|++++|.+.+..|..++.+++|++|++.+
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 99999999999984444455688999999999999999988899999999999999988
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=3.3e-15 Score=130.71 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=131.9
Q ss_pred CCCceeEEEEEecCCcc----cccc-------hhccccccEEeecCCCCCCCCchhh---HHHHHHhcCCccceeeeccc
Q 043587 94 LDEKVRHLMLIIGEGAI----FPVS-------TRRIKRMRSLLIDGGRSDHSSLNGE---ILEELFRELTSLRALDFCES 159 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~----~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~---~~~~~~~~~~~L~~L~L~~~ 159 (285)
...+++.|.+..+.... +|.. +..+++|++|++++|.. ... ..+..+..+++|++|+++
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~L~~L~L~-- 130 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-----GPTAQEPLIDFLSKHTPLEHLYLH-- 130 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC-----CTTTHHHHHHHHHHCTTCCEEECC--
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC-----CHHHHHHHHHHHHhCCCCCEEECc--
Confidence 46688999988864432 2323 36789999999999982 321 246668899999999999
Q ss_pred ccccccCCCc----cccccccc---------CCCceEeccccccc--ccc---hhhhcCCCccEEecCCCCCcC------
Q 043587 160 YHSRSSLTPE----IPRNIEKL---------VHLRYLSLSFQHIE--KLP---ETLCELYNLETLDISGCFDLE------ 215 (285)
Q Consensus 160 ~~~~~~~~~~----~p~~i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~~L~l~~~~~~~------ 215 (285)
+|.+... ++..+..+ ++|++|++++|.++ .+| ..+..+++|++|++++|. ++
T Consensus 131 ---~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~ 206 (386)
T 2ca6_A 131 ---NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEH 206 (386)
T ss_dssp ---SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHH
Confidence 8875433 33334444 89999999999986 444 467788999999999998 54
Q ss_pred cCcccccccCCCceeecCCCCCC----cccCCCCCCCCcCCcccccc---cc----CCcccc--ccCCcCCCceecccC
Q 043587 216 ELPKGIGKLVNMKHLLNSRTSSV----RYMPVGIGRLTGLRTLGEFT---KA----CRLESL--KNLEHLQICGIRRLG 281 (285)
Q Consensus 216 ~lp~~l~~l~~L~~L~l~~~~~~----~~~p~~~~~l~~L~~L~l~~---~~----~~~~~l--~~l~~L~~L~i~~~~ 281 (285)
..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++ .. ..+..+ +.+++|+.|+++++.
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 34447889999999999999875 56788889999999999987 11 134555 348899999998764
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=4.4e-14 Score=129.09 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=121.7
Q ss_pred CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587 94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN 173 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~ 173 (285)
...+++.|.++.+.+..+| ..+++|++|++++|. ...+ |. +.. +|++|+++ +|.+. .+|.
T Consensus 78 l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~------l~~i-p~-l~~--~L~~L~Ls-----~N~l~-~lp~- 137 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP---ELPASLEYLDACDNR------LSTL-PE-LPA--SLKHLDVD-----NNQLT-MLPE- 137 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC------CSCC-CC-CCT--TCCEEECC-----SSCCS-CCCC-
T ss_pred HcCCCCEEECcCCCCcccc---cccCCCCEEEccCCC------CCCc-ch-hhc--CCCEEECC-----CCcCC-CCCC-
Confidence 4578999999999888766 557899999999998 3334 33 443 89999999 88844 4776
Q ss_pred ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcC--
Q 043587 174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL-- 251 (285)
Q Consensus 174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L-- 251 (285)
.+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|++|++++|.+. .+|. +.. +|
T Consensus 138 --~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 138 --LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHH 204 (571)
T ss_dssp --CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred --cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence 57899999999999998886 57889999999998 666887 65 89999999999777 7777 654 67
Q ss_pred -----Ccccccc--ccCCccccccCCcCCCceecccC
Q 043587 252 -----RTLGEFT--KACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 252 -----~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+.|++++ -...+..+..+++|+.|+++++.
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 8899888 44567778889999999988764
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=2e-13 Score=107.90 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=98.6
Q ss_pred cEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccch-hhhcC
Q 043587 122 RSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCEL 200 (285)
Q Consensus 122 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l 200 (285)
++++++++. ...++.. -.++|++|+++ +|. +..+|..+..+.+|++|++++|.++.++. .+.++
T Consensus 13 ~~l~~~~~~------l~~ip~~---~~~~l~~L~L~-----~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKG------LKVLPKG---IPRDVTELYLD-----GNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSC------CSSCCSC---CCTTCCEEECC-----SSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCC------CCcCCCC---CCCCCCEEECC-----CCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 578888887 4444322 23689999999 888 56788889999999999999999998874 58899
Q ss_pred CCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 201 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|+.|++.+
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 9999999999984444445689999999999999988854445688999999999987
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=3.8e-14 Score=110.29 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=104.6
Q ss_pred HhcCCccceeeecccccccccCCCcccccccccC-CCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccc-c
Q 043587 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV-HLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI-G 222 (285)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l-~ 222 (285)
+..+.+|+.|+++ +|+ ...+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|. +..+|..+ +
T Consensus 15 ~~~~~~L~~L~l~-----~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLR-----GYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECT-----TSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred cCCcCCceEEEee-----CCC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhh
Confidence 4567889999999 888 445654 55554 999999999999988 578999999999999998 67777665 8
Q ss_pred ccCCCceeecCCCCCCcccCC--CCCCCCcCCcccccc--ccCCccc----cccCCcCCCceecccC
Q 043587 223 KLVNMKHLLNSRTSSVRYMPV--GIGRLTGLRTLGEFT--KACRLES----LKNLEHLQICGIRRLG 281 (285)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~--~~~~~~~----l~~l~~L~~L~i~~~~ 281 (285)
.+++|++|++++|.+. .+|. .++.+++|+.|++++ -...+.. +..+++|+.|+++.+.
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999874 6776 789999999999998 2233443 8899999999987764
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=1.2e-13 Score=107.49 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=92.3
Q ss_pred eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccC
Q 043587 99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV 178 (285)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~ 178 (285)
+.+.+..+.+..++..+ .++|++|++++|. ...+++..|..+++|++|+++ +|.+.+..+..+..++
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK------LQSLPHGVFDKLTQLTKLSLS-----QNQIQSLPDGVFDKLT 76 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCT
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCc------ccEeCHHHhcCcccccEEECC-----CCcceEeChhHccCCC
Confidence 34555555555455333 3688888888887 334445557788888888888 7774444445567888
Q ss_pred CCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCccc
Q 043587 179 HLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYM 241 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~ 241 (285)
+|++|++++|.++.+|.. +..+++|++|++++|. ++.+|.. +..+++|++|++++|++.+..
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 888888888888877754 5778888888888887 5566655 477888888888888766543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1.4e-13 Score=125.98 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=102.0
Q ss_pred cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhc
Q 043587 120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCE 199 (285)
Q Consensus 120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 199 (285)
.|+.|++++|. ...+ |. +..+++|+.|+++ +|. +..+|..++.+++|++|++++|.++.+| .+++
T Consensus 442 ~L~~L~Ls~n~------l~~l-p~-~~~l~~L~~L~Ls-----~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHKD------LTVL-CH-LEQLLLVTHLDLS-----HNR-LRALPPALAALRCLEVLQASDNALENVD-GVAN 506 (567)
T ss_dssp TCSEEECTTSC------CSSC-CC-GGGGTTCCEEECC-----SSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTT
T ss_pred CceEEEecCCC------CCCC-cC-ccccccCcEeecC-----ccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCC
Confidence 58899999998 4444 45 8999999999999 888 5588999999999999999999999998 8999
Q ss_pred CCCccEEecCCCCCcCcC--cccccccCCCceeecCCCCCCcccCCCCC----CCCcCCcccc
Q 043587 200 LYNLETLDISGCFDLEEL--PKGIGKLVNMKHLLNSRTSSVRYMPVGIG----RLTGLRTLGE 256 (285)
Q Consensus 200 l~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~l~~~~~~~~~p~~~~----~l~~L~~L~l 256 (285)
+++|++|++++|. +..+ |..++.+++|++|++++|++.+. |..+. .+++|+.|++
T Consensus 507 l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 LPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence 9999999999998 5555 89999999999999999988754 43433 3778887753
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=8.5e-16 Score=122.02 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=88.4
Q ss_pred CcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccc
Q 043587 108 GAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSF 187 (285)
Q Consensus 108 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~ 187 (285)
+..++..+..+++|++|++++|. ...+ + .+..+++|++|+++ +|. ...+|..+..+++|++|++++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~------l~~l-~-~~~~l~~L~~L~l~-----~n~-l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN------IEKI-S-SLSGMENLRILSLG-----RNL-IKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE------ESCC-C-CHHHHTTCCEEEEE-----EEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCC------Cccc-c-ccccCCCCCEEECC-----CCC-cccccchhhcCCcCCEEECcC
Confidence 33345567777777777777776 3333 3 46677777777777 666 446666666677777777777
Q ss_pred ccccccchhhhcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCCCCcccCCC----------CCCCCcCCccc
Q 043587 188 QHIEKLPETLCELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTSSVRYMPVG----------IGRLTGLRTLG 255 (285)
Q Consensus 188 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~----------~~~l~~L~~L~ 255 (285)
|.++.+| .++.+++|++|++++|. +..+|. .+..+++|++|++++|++.+..|.. +..+++|+.|+
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777766 56777777777777776 555443 5677777777777777666554442 55666666665
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=3.8e-13 Score=120.10 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=35.4
Q ss_pred CCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 179 HLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
+|++|++++|.++.+| .++++++|++|++++|. +..+|... ++|++|++++|.+. .+| .++.+++|++|++++
T Consensus 174 ~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred cccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCC
Confidence 4444444444444444 34445555555555544 33333221 34555555555443 444 255666666666655
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=107.37 Aligned_cols=124 Identities=16% Similarity=0.266 Sum_probs=99.0
Q ss_pred EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587 100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH 179 (285)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~ 179 (285)
.+.+..+.+..+|..+. ++|++|++.+|. ...+ +..|..+++|++|+++ +|.+.+..+..+..+++
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~------i~~i-p~~~~~l~~L~~L~Ls-----~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ------FTLV-PKELSNYKHLTLIDLS-----NNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC------CCSC-CGGGGGCTTCCEEECC-----SSCCCCCCTTTTTTCTT
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc------Cchh-HHHhhcccCCCEEECC-----CCcCCEeCHhHccCCCC
Confidence 45566666665665443 589999999998 4454 3568899999999999 88866656677899999
Q ss_pred CceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCC
Q 043587 180 LRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSV 238 (285)
Q Consensus 180 L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~ 238 (285)
|++|++++|.++.+|+ .+.++++|++|++++|. +..+|. .+..+++|++|++++|++.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999999998875 68899999999999998 666665 4788999999999998764
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=2.4e-14 Score=124.20 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=105.0
Q ss_pred ceeEEEEEecCCcc-cccchhcc-----ccccEEeecCCCCCCCCchhhHHHH----HHhcC-Cccceeeeccccccccc
Q 043587 97 KVRHLMLIIGEGAI-FPVSTRRI-----KRMRSLLIDGGRSDHSSLNGEILEE----LFREL-TSLRALDFCESYHSRSS 165 (285)
Q Consensus 97 ~l~~L~l~~~~~~~-~~~~~~~l-----~~L~~L~l~~~~~~~~~l~~~~~~~----~~~~~-~~L~~L~L~~~~~~~~~ 165 (285)
+++.|.+..+.+.. .+..+..+ ++|++|++++|. .....+. .+..+ ++|++|+++ +|.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls-----~N~ 120 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF------LSYKSSDELVKTLAAIPFTITVLDLG-----WND 120 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC------GGGSCHHHHHHHHHTSCTTCCEEECC-----SSC
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc------CChHHHHHHHHHHHhCCCCccEEECc-----CCc
Confidence 67777777776655 23444554 777777777776 2221222 23444 677788877 666
Q ss_pred CCCccccccc----c-cCCCceEeccccccc-----ccchhhhcCC-CccEEecCCCCCcCcCccccc----cc-CCCce
Q 043587 166 LTPEIPRNIE----K-LVHLRYLSLSFQHIE-----KLPETLCELY-NLETLDISGCFDLEELPKGIG----KL-VNMKH 229 (285)
Q Consensus 166 ~~~~~p~~i~----~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~l~----~l-~~L~~ 229 (285)
+.+..+..+. . ..+|++|++++|.++ .++..+..++ +|++|++++|......+..+. .. ++|++
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 200 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCE
Confidence 4433333332 2 247888888888766 4445555555 788888888874344443333 34 47888
Q ss_pred eecCCCCCCcc----cCCCCCCC-CcCCcccccc---ccCC----ccccccCCcCCCceecccC
Q 043587 230 LLNSRTSSVRY----MPVGIGRL-TGLRTLGEFT---KACR----LESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 230 L~l~~~~~~~~----~p~~~~~l-~~L~~L~l~~---~~~~----~~~l~~l~~L~~L~i~~~~ 281 (285)
|++++|.+... ++..+... ++|++|++++ .... ...+..+++|+.|+++++.
T Consensus 201 L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 88888866541 44445553 4788888877 2211 2334667778888877653
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=4.8e-13 Score=122.22 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=118.5
Q ss_pred ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587 97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK 176 (285)
Q Consensus 97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~ 176 (285)
+++.|++..+.+..+|..+ +++|++|++++|. ...++ ..+++|++|+++ +|.+.+ +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~------l~~ip----~~l~~L~~L~Ls-----~N~l~~-ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA------LISLP----ELPASLEYLDAC-----DNRLST-LPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC------CSCCC----CCCTTCCEEECC-----SSCCSC-CCC-CCT
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC------Ccccc----cccCCCCEEEcc-----CCCCCC-cch-hhc
Confidence 7888999998887777655 3889999999998 33543 457899999999 888444 777 665
Q ss_pred cCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccc
Q 043587 177 LVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGE 256 (285)
Q Consensus 177 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 256 (285)
+|++|++++|.++.+|. .+++|++|++++|. ++.+|. .+++|++|++++|.+.+ +|. +. ++|+.|++
T Consensus 121 --~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp --TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred --CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 99999999999999987 68999999999998 667886 67899999999998875 887 66 89999999
Q ss_pred cc--ccCCccccccCCcC-------CCceeccc
Q 043587 257 FT--KACRLESLKNLEHL-------QICGIRRL 280 (285)
Q Consensus 257 ~~--~~~~~~~l~~l~~L-------~~L~i~~~ 280 (285)
++ -...+. +.. +| +.|+++++
T Consensus 188 s~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 188 STNLLESLPA-VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp CSSCCSSCCC-CC----------CCEEEECCSS
T ss_pred cCCCCCchhh-HHH--hhhcccccceEEecCCC
Confidence 98 223333 443 56 88888764
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1e-15 Score=121.51 Aligned_cols=130 Identities=24% Similarity=0.208 Sum_probs=107.0
Q ss_pred HHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccc
Q 043587 142 EELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI 221 (285)
Q Consensus 142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l 221 (285)
+..+..+++|++|+++ +|. ...+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+
T Consensus 41 ~~~~~~l~~L~~L~ls-----~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 41 DATLSTLKACKHLALS-----TNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp HHHHHHTTTCSEEECS-----EEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred hHHHhcCCCCCEEECC-----CCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 3468999999999999 888 44477 8899999999999999999999888888999999999998 67777 68
Q ss_pred cccCCCceeecCCCCCCcccC--CCCCCCCcCCcccccc---ccCCcc----------ccccCCcCCCceecccC
Q 043587 222 GKLVNMKHLLNSRTSSVRYMP--VGIGRLTGLRTLGEFT---KACRLE----------SLKNLEHLQICGIRRLG 281 (285)
Q Consensus 222 ~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~---~~~~~~----------~l~~l~~L~~L~i~~~~ 281 (285)
+.+++|++|++++|.+.. +| ..+..+++|++|++.+ ....+. .+..+++|+.|+-..+.
T Consensus 112 ~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp HHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred ccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 999999999999998764 33 3688999999999988 222222 27888889988755443
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=2.4e-14 Score=124.22 Aligned_cols=174 Identities=13% Similarity=0.032 Sum_probs=125.7
Q ss_pred CceeEEEEEecCCcc-cccc----hhcc-ccccEEeecCCCCCCCCchhhHHHHH----Hhc-CCccceeeecccccccc
Q 043587 96 EKVRHLMLIIGEGAI-FPVS----TRRI-KRMRSLLIDGGRSDHSSLNGEILEEL----FRE-LTSLRALDFCESYHSRS 164 (285)
Q Consensus 96 ~~l~~L~l~~~~~~~-~~~~----~~~l-~~L~~L~l~~~~~~~~~l~~~~~~~~----~~~-~~~L~~L~L~~~~~~~~ 164 (285)
.+++.|.+..+.+.. .+.. +..+ ++|++|++++|. ........ +.. .++|++|+++ +|
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~~~~l~~~l~~~~~~L~~L~Ls-----~N 148 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND------FSSKSSSEFKQAFSNLPASITSLNLR-----GN 148 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC------GGGSCHHHHHHHHTTSCTTCCEEECT-----TS
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc------CCcHHHHHHHHHHHhCCCceeEEEcc-----CC
Confidence 789999999998775 2333 4444 899999999998 33333333 344 3699999999 77
Q ss_pred cCCC----cccccccccC-CCceEecccccccccc-h----hhhcC-CCccEEecCCCCCcCc-----Cccccccc-CCC
Q 043587 165 SLTP----EIPRNIEKLV-HLRYLSLSFQHIEKLP-E----TLCEL-YNLETLDISGCFDLEE-----LPKGIGKL-VNM 227 (285)
Q Consensus 165 ~~~~----~~p~~i~~l~-~L~~L~l~~~~l~~lp-~----~i~~l-~~L~~L~l~~~~~~~~-----lp~~l~~l-~~L 227 (285)
.+.. .++..+..++ +|++|++++|.++..+ . .+... ++|++|++++|. ++. ++..+..+ ++|
T Consensus 149 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 149 DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTC
T ss_pred cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCc
Confidence 7443 3445556665 8999999999987543 2 34445 599999999998 555 66667664 599
Q ss_pred ceeecCCCCCCccc----CCCCCCCCcCCcccccc-c---------cCCccccccCCcCCCceecccC
Q 043587 228 KHLLNSRTSSVRYM----PVGIGRLTGLRTLGEFT-K---------ACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 228 ~~L~l~~~~~~~~~----p~~~~~l~~L~~L~l~~-~---------~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
++|++++|.+...- ...+..+++|++|++++ . ......+..+++|+.|++++.+
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99999999876532 24467889999999987 1 1233456788889999888764
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=1e-12 Score=121.40 Aligned_cols=73 Identities=25% Similarity=0.242 Sum_probs=49.4
Q ss_pred CCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceec
Q 043587 201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIR 278 (285)
Q Consensus 201 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~ 278 (285)
++|+.|++++|. +..+| ..+++|++|++++|.+. .+|. .+++|+.|++++ -...+..+.++++|+.|+++
T Consensus 221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 456666666665 44555 34566777777777655 4555 566788888877 33566778888889888888
Q ss_pred ccC
Q 043587 279 RLG 281 (285)
Q Consensus 279 ~~~ 281 (285)
++.
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.40 E-value=1.2e-12 Score=116.86 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=39.1
Q ss_pred cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 252 (285)
.++.+++|++|++++|.++.+|... ++|++|++++|. +..+| .++.+++|++|++++|.+. .+|.. +++|+
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~ 260 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLE 260 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCC
T ss_pred cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccC
Confidence 3555555555555555555554321 355555555554 44555 2555555555555555444 23332 24455
Q ss_pred cccccc
Q 043587 253 TLGEFT 258 (285)
Q Consensus 253 ~L~l~~ 258 (285)
+|++++
T Consensus 261 ~L~l~~ 266 (454)
T 1jl5_A 261 ALNVRD 266 (454)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555544
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=1.1e-12 Score=121.28 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=91.1
Q ss_pred CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
..+.+++.|.+..+.+..++. .+++|++|++++|. ...++. .+++|++|+++ +|. ...+|.
T Consensus 58 ~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~------l~~lp~----~l~~L~~L~Ls-----~N~-l~~l~~ 118 (622)
T 3g06_A 58 CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ------LTSLPV----LPPGLLELSIF-----SNP-LTHLPA 118 (622)
T ss_dssp CCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC------CSCCCC----CCTTCCEEEEC-----SCC-CCCCCC
T ss_pred hhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc------CCcCCC----CCCCCCEEECc-----CCc-CCCCCC
Confidence 356789999999998887665 67899999999998 334432 68899999999 888 555665
Q ss_pred cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccc---ccc--------------CCCceeecCCC
Q 043587 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI---GKL--------------VNMKHLLNSRT 235 (285)
Q Consensus 173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l---~~l--------------~~L~~L~l~~~ 235 (285)
.+.+|++|++++|.++.+|.. +++|++|++++|. +..+|..+ ..| ++|++|++++|
T Consensus 119 ---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 119 ---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN 191 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred ---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC
Confidence 567899999999998888864 4788899999887 55555432 223 66777777777
Q ss_pred CCC
Q 043587 236 SSV 238 (285)
Q Consensus 236 ~~~ 238 (285)
.+.
T Consensus 192 ~l~ 194 (622)
T 3g06_A 192 QLA 194 (622)
T ss_dssp CCS
T ss_pred CCC
Confidence 665
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=7.7e-14 Score=124.56 Aligned_cols=177 Identities=15% Similarity=0.070 Sum_probs=123.0
Q ss_pred CCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCC----ccceeeeccccccccc
Q 043587 95 DEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELT----SLRALDFCESYHSRSS 165 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~ 165 (285)
.++++.+.+..+.+.. ++..+..+++|++|++++|. +....+...+..++ +|++|+++ +|.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~-----~n~ 96 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQ-----NCC 96 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECT-----TSC
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEcc-----CCC
Confidence 4578888888887663 35566777889999998887 34433344445566 68899998 777
Q ss_pred CCC----cccccccccCCCceEeccccccccc-chhhh-----cCCCccEEecCCCCCcCc----CcccccccCCCceee
Q 043587 166 LTP----EIPRNIEKLVHLRYLSLSFQHIEKL-PETLC-----ELYNLETLDISGCFDLEE----LPKGIGKLVNMKHLL 231 (285)
Q Consensus 166 ~~~----~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~ 231 (285)
+.. .+|..+..+++|++|++++|.++.. +..+. ..++|++|++++|..... ++..+..+++|++|+
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 442 4577788888999999999887632 22222 256799999999874432 355667788999999
Q ss_pred cCCCCCCcccCCCCC-----CCCcCCcccccc---cc----CCccccccCCcCCCceecccC
Q 043587 232 NSRTSSVRYMPVGIG-----RLTGLRTLGEFT---KA----CRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 232 l~~~~~~~~~p~~~~-----~l~~L~~L~l~~---~~----~~~~~l~~l~~L~~L~i~~~~ 281 (285)
+++|.+....+..+. ..++|++|++++ .. ..+..+..+++|+.|+++++.
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 999876543333332 255888998887 22 135567788999999998763
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=1.2e-13 Score=123.23 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=126.0
Q ss_pred CCceeEEEEEecCCcc-ccc-chhccc----cccEEeecCCCCCCCCchh---hHHHHHHhcCCccceeeeccccccccc
Q 043587 95 DEKVRHLMLIIGEGAI-FPV-STRRIK----RMRSLLIDGGRSDHSSLNG---EILEELFRELTSLRALDFCESYHSRSS 165 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~-~~~-~~~~l~----~L~~L~l~~~~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~ 165 (285)
.++++.|++..+.+.. .+. ....++ +|++|++++|. +.. ...+..+..+++|++|+++ +|.
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls-----~n~ 124 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-----LTGAGCGVLSSTLRTLPTLQELHLS-----DNL 124 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-----CBGGGHHHHHHHTTSCTTCCEEECC-----SSB
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-----CCHHHHHHHHHHHccCCceeEEECC-----CCc
Confidence 4789999999887754 222 223455 69999999998 232 2347778999999999999 777
Q ss_pred CCCccccccc-----ccCCCceEecccccccc-----cchhhhcCCCccEEecCCCCCcCcCccccc-----ccCCCcee
Q 043587 166 LTPEIPRNIE-----KLVHLRYLSLSFQHIEK-----LPETLCELYNLETLDISGCFDLEELPKGIG-----KLVNMKHL 230 (285)
Q Consensus 166 ~~~~~p~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-----~l~~L~~L 230 (285)
+....+..+. ...+|++|++++|.++. ++..+..+++|++|++++|......+..+. ..++|++|
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 4433333332 24579999999999774 466777889999999999984333333333 25699999
Q ss_pred ecCCCCCCcc----cCCCCCCCCcCCcccccc---ccCC-----ccccccCCcCCCceeccc
Q 043587 231 LNSRTSSVRY----MPVGIGRLTGLRTLGEFT---KACR-----LESLKNLEHLQICGIRRL 280 (285)
Q Consensus 231 ~l~~~~~~~~----~p~~~~~l~~L~~L~l~~---~~~~-----~~~l~~l~~L~~L~i~~~ 280 (285)
++++|.+... +|..+..+++|++|++++ .... ......+++|+.|+++++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 9999987753 566778899999999987 1111 112235889999999887
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=1.5e-12 Score=101.27 Aligned_cols=123 Identities=23% Similarity=0.193 Sum_probs=97.2
Q ss_pred ccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchh-hhc
Q 043587 121 MRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET-LCE 199 (285)
Q Consensus 121 L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 199 (285)
.+.+++.++. ...++. .-.++|+.|+++ +|.+.+..+..++.+++|++|++++|.++.+|.. ++.
T Consensus 9 ~~~l~~~~~~------l~~~p~---~~~~~l~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKG------LTSVPT---GIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSC------CSSCCT---TCCTTCSEEECC-----SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEecCCC------CccCCC---CCCCCCcEEEeC-----CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC
Confidence 4677777776 333322 234789999999 8885544455678999999999999999988764 589
Q ss_pred CCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 200 LYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 200 l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
+++|++|++++|. ++.+|. .+..+++|++|++++|.+.+..+..+..+++|++|++.+
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 9999999999998 556655 468999999999999988754444568899999999987
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=3.5e-12 Score=110.06 Aligned_cols=177 Identities=18% Similarity=0.163 Sum_probs=109.0
Q ss_pred CCCceeEEEEEecCCcc-cc-cchhccccccEE-eecCCCCCCCCchhhHHHHHHhcCCccceeeecccccc--------
Q 043587 94 LDEKVRHLMLIIGEGAI-FP-VSTRRIKRMRSL-LIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHS-------- 162 (285)
Q Consensus 94 ~~~~l~~L~l~~~~~~~-~~-~~~~~l~~L~~L-~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~-------- 162 (285)
...+++.|.++.+.+.. ++ .+|.++++++.+ .+.+|. ...+++..|..+++|++|++++|.+.
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN------LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT------CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc------ccccCchhhhhccccccccccccccccCCchhhc
Confidence 35677777777776543 22 355666666543 344454 34444555677777777777733211
Q ss_pred -----------cccCCCccc-cccccc-CCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccc-ccccCCCc
Q 043587 163 -----------RSSLTPEIP-RNIEKL-VHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKG-IGKLVNMK 228 (285)
Q Consensus 163 -----------~~~~~~~~p-~~i~~l-~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~ 228 (285)
++..+..+| ..+..+ ..+++|++++|.++.+|..+....+|+.+++.++..++.+|.. +..+++|+
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 211122232 223333 3577888888888888877777778888888876567888764 57888888
Q ss_pred eeecCCCCCCcccCC-CCCCCCcCCccccccccCCccccccCCcCCCceec
Q 043587 229 HLLNSRTSSVRYMPV-GIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIR 278 (285)
Q Consensus 229 ~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~l~~l~~L~~L~i~ 278 (285)
+|++++|++. .+|. .+.++.+|+.++...- .....+..+++|+.+++.
T Consensus 206 ~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l-~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 206 ILDISRTRIH-SLPSYGLENLKKLRARSTYNL-KKLPTLEKLVALMEASLT 254 (350)
T ss_dssp EEECTTSCCC-CCCSSSCTTCCEEECTTCTTC-CCCCCTTTCCSCCEEECS
T ss_pred hhhcCCCCcC-ccChhhhccchHhhhccCCCc-CcCCCchhCcChhhCcCC
Confidence 8888888766 4543 4566666665555432 222346677777776654
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.30 E-value=3.5e-12 Score=117.40 Aligned_cols=176 Identities=9% Similarity=-0.008 Sum_probs=97.8
Q ss_pred CCceeEEEEEecCCcc-cccchhc-cc-cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc--
Q 043587 95 DEKVRHLMLIIGEGAI-FPVSTRR-IK-RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE-- 169 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~-~~~~~~~-l~-~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-- 169 (285)
..+++.|.+..+.... .+..+.. ++ +|++|++.++.. +.....+.....+++|++|+++ +|.+.+.
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~-----~~~~~~~~~ 181 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLME-----ESSFSEKDG 181 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECT-----TCEEECCCS
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECc-----cccccCcch
Confidence 4567777777765543 2333333 33 377777777641 1222234445577788888887 6654333
Q ss_pred --ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCC---c
Q 043587 170 --IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSV---R 239 (285)
Q Consensus 170 --~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~---~ 239 (285)
++..+..+++|++|++++|.++ .++..+.++++|+.|++++|. ...+|..+..+++|++|+++.+... .
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchH
Confidence 3334455677777777777764 344445567777777777776 5556666677777777777643211 1
Q ss_pred ccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587 240 YMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 240 ~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~ 280 (285)
..+..++.+++|+.|++.. ....+..+..+++|+.|+++++
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 2223344444555554443 2233333444445555555444
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=2.2e-11 Score=93.99 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=81.3
Q ss_pred cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchh-hh
Q 043587 120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET-LC 198 (285)
Q Consensus 120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 198 (285)
..++++++++. ...++.. + .++|++|+++ +|.+.+..|..+..+++|++|++++|.++.+|+. +.
T Consensus 10 ~~~~l~~s~n~------l~~ip~~-~--~~~l~~L~L~-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSGKS------LASVPTG-I--PTTTQVLYLY-----DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp ETTEEECTTSC------CSSCCSC-C--CTTCSEEECC-----SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCCEEEeCCCC------cCccCcc-C--CCCCcEEEcC-----CCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 35788888887 4444322 2 3778899998 8886666677888899999999999998888765 47
Q ss_pred cCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCc
Q 043587 199 ELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVR 239 (285)
Q Consensus 199 ~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~ 239 (285)
++++|++|++++|+ +..+|. .+..+++|++|++++|++..
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88999999999998 666655 47889999999999987654
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=2.6e-11 Score=93.96 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=83.0
Q ss_pred ccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchh-hhc
Q 043587 121 MRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET-LCE 199 (285)
Q Consensus 121 L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 199 (285)
-+.++++++. ...++.. + .++|++|+++ +|++.+..|..+..+++|++|++++|.++.+|.. +.+
T Consensus 14 ~~~l~~~~n~------l~~iP~~-~--~~~L~~L~Ls-----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNIR------LASVPAG-I--PTDKQRLWLN-----NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SSEEECCSSC------CSSCCSC-C--CTTCSEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcEEEeCCCC------CCccCCC-c--CCCCcEEEeC-----CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 3678888887 4454322 2 3789999999 8886666678889999999999999999999875 478
Q ss_pred CCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCC
Q 043587 200 LYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSV 238 (285)
Q Consensus 200 l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~ 238 (285)
+++|++|++++|+ +..+|.. +..+++|++|++++|++.
T Consensus 80 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 LTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999999999998 6677665 888999999999999765
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.24 E-value=1.7e-12 Score=119.49 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=106.7
Q ss_pred ceeEEEEEecCCcc---cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCC----Cc
Q 043587 97 KVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLT----PE 169 (285)
Q Consensus 97 ~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~~ 169 (285)
+++.|.+..+.... +......+++|++|++.+|..... .....+..+..+++|+.|+++ +|.+. +.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~~~~L~~L~L~-----~n~~~~~~~~~ 211 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK--DGKWLHELAQHNTSLEVLNFY-----MTEFAKISPKD 211 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC--CSHHHHHHHHHCCCCCEEECT-----TCCCSSCCHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc--chhHHHHHHhcCCCccEEEee-----ccCCCccCHHH
Confidence 48888887664211 233344778888888888751100 011134446677888888887 66643 23
Q ss_pred ccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCC--------------------------cCcCcccccc
Q 043587 170 IPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFD--------------------------LEELPKGIGK 223 (285)
Q Consensus 170 ~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~--------------------------~~~lp~~l~~ 223 (285)
++..+..+++|++|++++|.+..+|..+.++++|+.|+++.+.. ...+|..+..
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~ 291 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhh
Confidence 44555667788888888877777776666777777777653211 3345555667
Q ss_pred cCCCceeecCCCCCCcccC-CCCCCCCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587 224 LVNMKHLLNSRTSSVRYMP-VGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRR 279 (285)
Q Consensus 224 l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~ 279 (285)
+++|++|++++|.+....+ ..++.+++|++|++.. ..........+++|+.|++++
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 7788888888876443222 2356777777777764 222222335566777777774
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=8.5e-12 Score=96.76 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=89.6
Q ss_pred eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccC
Q 043587 99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV 178 (285)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~ 178 (285)
+.+.+..+.+..+|..+. ++|+.|++++|. ...+++..|..+++|++|+|+ +|++.+..+..+..++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFN-----SNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECC-----CCCCCccChhHhCCcc
Confidence 567777777777776654 899999999998 445457778999999999999 8884443344568999
Q ss_pred CCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCccccccc
Q 043587 179 HLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKGIGKL 224 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l 224 (285)
+|++|++++|.++.+|+. +..+++|++|++++|. +...|..+..+
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccccHHHH
Confidence 999999999999999875 8899999999999998 66666544443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=1.6e-11 Score=94.76 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=65.4
Q ss_pred eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccC
Q 043587 99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV 178 (285)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~ 178 (285)
+.+++..+.+..+|..+ .++|++|++++|. ...+.+..|..+++|++|+|+ +|++.+..+..+..++
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~------i~~~~~~~~~~l~~L~~L~Ls-----~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQ------ITKLEPGVFDRLTQLTRLDLD-----NNQLTVLPAGVFDKLT 78 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCT
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCc------CCccChhhhcCcccCCEEECC-----CCCcCccChhhccCCC
Confidence 45566666665555544 2677777777776 333345556777777777777 6664433344456777
Q ss_pred CCceEecccccccccch-hhhcCCCccEEecCCCC
Q 043587 179 HLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCF 212 (285)
Q Consensus 179 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 212 (285)
+|++|++++|.++.+|+ .+.++++|++|++++|.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77777777777777765 36677777777777776
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=1.4e-11 Score=113.43 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=91.2
Q ss_pred CCceeEEEEEecCCcc-cccchh-ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587 95 DEKVRHLMLIIGEGAI-FPVSTR-RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR 172 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~ 172 (285)
..+++.|.+..+.... .+..+. .+++|++|++.+|.. +....++..+..+++|++|+++ +|.+.+..+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~-----~~~i~~~~~~ 174 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG----FSTDGLAAIAATCRNLKELDLR-----ESDVDDVSGH 174 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE----EEHHHHHHHHHHCTTCCEEECT-----TCEEECCCGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC----CCHHHHHHHHHhCCCCCEEeCc-----CCccCCcchH
Confidence 4578889998876654 233443 678999999988831 2333345656689999999998 6664443333
Q ss_pred c----ccccCCCceEeccccc--cc--ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587 173 N----IEKLVHLRYLSLSFQH--IE--KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT 235 (285)
Q Consensus 173 ~----i~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 235 (285)
. ...+++|++|++++|. +. .++..+..+++|+.|++++|...+.+|..+..+++|++|++..+
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 3 3356789999999886 22 23333456789999999998656667777888888888886554
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=3.2e-11 Score=104.79 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=81.7
Q ss_pred CCceeEEEEEecCCcc-cccchhcc-----ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC
Q 043587 95 DEKVRHLMLIIGEGAI-FPVSTRRI-----KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP 168 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~~-~~~~~~~l-----~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 168 (285)
...++.+++..+.+.. ....+... ++|+.|++++|. +...........+++|+.|+|+ +|.+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~L~~L~~L~Ls-----~n~l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-----LDPAGLRTLLPVFLRARKLGLQ-----LNSLGP 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-----CCHHHHHHTHHHHHTEEEEECC-----SSCCCH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-----CCHHHHHHHHHHHHhccHhhcC-----CCCCCH
Confidence 3456666666665543 11122222 567777777776 2332223323345567777777 665332
Q ss_pred cccccc-----cccCCCceEecccccccc-----cchhhhcCCCccEEecCCCCCcCc-----CcccccccCCCceeecC
Q 043587 169 EIPRNI-----EKLVHLRYLSLSFQHIEK-----LPETLCELYNLETLDISGCFDLEE-----LPKGIGKLVNMKHLLNS 233 (285)
Q Consensus 169 ~~p~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~l~ 233 (285)
.-...+ ...+.|++|++++|.++. ++..+...++|++|++++|. ++. ++..+...++|++|+++
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECC
Confidence 222222 124567777777776552 34445566667777777776 332 23445556667777777
Q ss_pred CCCCCcc----cCCCCCCCCcCCcccccc
Q 043587 234 RTSSVRY----MPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 234 ~~~~~~~----~p~~~~~l~~L~~L~l~~ 258 (285)
+|.+... ++..+...++|++|++++
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 7765431 223344556677777665
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1e-09 Score=94.30 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=75.2
Q ss_pred EEeecCC-CCCCCCchhhHHHHHHhcCCccceeeeccccccc-ccCCCcccccccccCCCceEecccccccccch-hhhc
Q 043587 123 SLLIDGG-RSDHSSLNGEILEELFRELTSLRALDFCESYHSR-SSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCE 199 (285)
Q Consensus 123 ~L~l~~~-~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~ 199 (285)
.++.+++ . ...+ |. +..+++|+.|+|+ + |.+.+..+..|+.+.+|++|+|++|.++.+|+ .+++
T Consensus 12 ~v~~~~~n~------l~~i-p~-l~~~~~L~~L~l~-----~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGA------LDSL-HH-LPGAENLTELYIE-----NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCC------CTTT-TT-SCSCSCCSEEECC-----SCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred EEEcCCCCC------CCcc-CC-CCCCCCeeEEEcc-----CCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence 4566665 5 4444 44 7888889999998 6 66444344678888999999999998887765 5688
Q ss_pred CCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCc
Q 043587 200 LYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR 239 (285)
Q Consensus 200 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 239 (285)
+++|+.|+|++|+ +..+|..+.....|++|++.+|++..
T Consensus 79 l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 79 TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCccC
Confidence 8999999999887 66776654443348999998887653
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=5.9e-11 Score=103.10 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=108.4
Q ss_pred cccccEEeecCCCCCCCCchhhHHHHHHhc-----CCccceeeecccccccccCCCcccccc-cccCCCceEeccccccc
Q 043587 118 IKRMRSLLIDGGRSDHSSLNGEILEELFRE-----LTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIE 191 (285)
Q Consensus 118 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~~p~~i-~~l~~L~~L~l~~~~l~ 191 (285)
++.|++|++++|. +... ....+.. .++|+.|+|+ +|.+...-...+ ..+.+|++|++++|.++
T Consensus 71 ~~~L~~L~Ls~n~-----l~~~-~~~~l~~~L~~~~~~L~~L~Ls-----~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVR-----MTPV-KCTVVAAVLGSGRHALDEVNLA-----SCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp HTTCCEEECTTSC-----CCHH-HHHHHHHHHSSCSSCEEEEECT-----TCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred HhhCCEEEecCCC-----CCHH-HHHHHHHHHhhCCCCceEEEec-----CCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 4689999999998 2332 2333333 2799999999 888443322233 34678999999999987
Q ss_pred cc-----chhh-hcCCCccEEecCCCCCcCc-----CcccccccCCCceeecCCCCCCc----ccCCCCCCCCcCCcccc
Q 043587 192 KL-----PETL-CELYNLETLDISGCFDLEE-----LPKGIGKLVNMKHLLNSRTSSVR----YMPVGIGRLTGLRTLGE 256 (285)
Q Consensus 192 ~l-----p~~i-~~l~~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l 256 (285)
.. ...+ ...++|++|++++|. ++. ++..+...++|++|++++|.+.. .++..+...++|++|++
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 33 2222 246889999999998 433 45556788999999999998754 23456777889999999
Q ss_pred cc---c----cCCccccccCCcCCCceecccC
Q 043587 257 FT---K----ACRLESLKNLEHLQICGIRRLG 281 (285)
Q Consensus 257 ~~---~----~~~~~~l~~l~~L~~L~i~~~~ 281 (285)
++ . ......+...+.|+.|+++++.
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 98 1 1234456677899999998874
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=1.1e-10 Score=107.21 Aligned_cols=62 Identities=15% Similarity=0.026 Sum_probs=33.7
Q ss_pred CcccccccCCCceeecCCCCCCcc-cCCCCCCCCcCCcccccc--c-cCCccccccCCcCCCceec
Q 043587 217 LPKGIGKLVNMKHLLNSRTSSVRY-MPVGIGRLTGLRTLGEFT--K-ACRLESLKNLEHLQICGIR 278 (285)
Q Consensus 217 lp~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~--~-~~~~~~l~~l~~L~~L~i~ 278 (285)
+|..+..+++|++|++++|.+... ++..+..+++|++|++.+ . .........+++|+.|++.
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 444444667778888877764432 222245667777777765 1 1111112346666666663
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=4.5e-10 Score=96.48 Aligned_cols=102 Identities=22% Similarity=0.165 Sum_probs=85.0
Q ss_pred EEEEEec-CCcccccchhccccccEEeecC-CCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccccc
Q 043587 100 HLMLIIG-EGAIFPVSTRRIKRMRSLLIDG-GRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL 177 (285)
Q Consensus 100 ~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l 177 (285)
.+.+... .+..+|. +..+++|+.|++++ |. ...+++..|.++++|++|+|+ +|++.+..|..|..+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~------l~~~~~~~~~~l~~L~~L~l~-----~N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH------LQHLELRDLRGLGELRNLTIV-----KSGLRFVAPDAFHFT 79 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS------CCEECGGGSCSCCCCSEEECC-----SSCCCEECTTGGGSC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC------CCCcChhHhccccCCCEEECC-----CCccceeCHHHhcCC
Confidence 3455665 6666788 89999999999996 87 555566779999999999999 898666667788999
Q ss_pred CCCceEecccccccccchhhhcCCCccEEecCCCCC
Q 043587 178 VHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFD 213 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 213 (285)
++|++|+|++|.++.+|+.+.....|+.|++.+|..
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence 999999999999999987666555599999999983
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.2e-09 Score=93.31 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=52.2
Q ss_pred cCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCc-eeecCCCCCCcccCCCCCCCCcCCc
Q 043587 177 LVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMK-HLLNSRTSSVRYMPVGIGRLTGLRT 253 (285)
Q Consensus 177 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~-~L~l~~~~~~~~~p~~~~~l~~L~~ 253 (285)
+.+|+++++++|+++.+|+ .+.++.+|+.+++.++ +..++ ..|.++++|+ .+++.. .+...-+..|..|++|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4556666666666666654 3455666666666664 33333 3456666666 666655 243333455666666666
Q ss_pred ccccc---ccCCccccccCCcCCCc
Q 043587 254 LGEFT---KACRLESLKNLEHLQIC 275 (285)
Q Consensus 254 L~l~~---~~~~~~~l~~l~~L~~L 275 (285)
+++.. ..-....+.++++|+.+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEeCCCccCccchhhhcCCcchhhh
Confidence 66643 22223345555555543
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=8.4e-10 Score=94.20 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=60.8
Q ss_pred CCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCC-cccccc--ccCCccccccCCcCCCc
Q 043587 200 LYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR-TLGEFT--KACRLESLKNLEHLQIC 275 (285)
Q Consensus 200 l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~l~~--~~~~~~~l~~l~~L~~L 275 (285)
+++|+.+++.+|. +..+|. .|..+.+|+.+++..| +...-+..|..+.+|+ ++.+.. ..-....+.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence 6889999999987 666665 5889999999999887 5544456789999999 998876 33344668888889888
Q ss_pred eec
Q 043587 276 GIR 278 (285)
Q Consensus 276 ~i~ 278 (285)
++.
T Consensus 303 ~l~ 305 (329)
T 3sb4_A 303 LAT 305 (329)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=1.3e-08 Score=87.93 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=109.3
Q ss_pred CCceeEEEEEecCCc-c--------cccchhccccccEEeecCCCCCCCCc----hhhHHHHHHhcCCccceeeeccccc
Q 043587 95 DEKVRHLMLIIGEGA-I--------FPVSTRRIKRMRSLLIDGGRSDHSSL----NGEILEELFRELTSLRALDFCESYH 161 (285)
Q Consensus 95 ~~~l~~L~l~~~~~~-~--------~~~~~~~l~~L~~L~l~~~~~~~~~l----~~~~~~~~~~~~~~L~~L~L~~~~~ 161 (285)
+..++.|.+...... . +..+...+++|+.|.+.........+ ... +...+..+++|+.|.+.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L~~L~L~---- 180 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLLNNLKIK---- 180 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTCCEEEEE----
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccC-HHHHHhcCCCCcEEEEe----
Confidence 345666666644432 1 23345678899999986653211111 112 34557889999999998
Q ss_pred ccccCCCcccccccccCCCceEecccccccc-cchhhh--cCCCccEEecCCC--CC-----cCcCcccc--cccCCCce
Q 043587 162 SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-LPETLC--ELYNLETLDISGC--FD-----LEELPKGI--GKLVNMKH 229 (285)
Q Consensus 162 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~-lp~~i~--~l~~L~~L~l~~~--~~-----~~~lp~~l--~~l~~L~~ 229 (285)
++. .-.++. + .+++|+.|++..+.+.. ....+. .+++|+.|+|+.+ .. ...+...+ ..+|+|++
T Consensus 181 -g~~-~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 181 -GTN-NLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp -CCB-TCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred -CCC-Cceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 653 223443 3 37899999999888652 123343 7899999998632 11 11121222 35789999
Q ss_pred eecCCCCCCcccCCC---CCCCCcCCcccccc---cc----CCccccccCCcCCCceeccc
Q 043587 230 LLNSRTSSVRYMPVG---IGRLTGLRTLGEFT---KA----CRLESLKNLEHLQICGIRRL 280 (285)
Q Consensus 230 L~l~~~~~~~~~p~~---~~~l~~L~~L~l~~---~~----~~~~~l~~l~~L~~L~i~~~ 280 (285)
|++.+|.+....+.. ...+++|++|+++. .. .....+..+++|+.|+++.+
T Consensus 257 L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 999988765432222 24578999999987 11 23444567888999998876
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=1.5e-07 Score=77.42 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=41.6
Q ss_pred hcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccccchhhhcCC--CccEEecCCCCCcCcCc---
Q 043587 146 RELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEKLPETLCELY--NLETLDISGCFDLEELP--- 218 (285)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~lp--- 218 (285)
..+++|+.|+|+ +|.+.+ .+|..+..+++|++|+|++|.++.+. .+..+. +|++|++.+|...+.+|
T Consensus 167 ~~l~~L~~L~Ls-----~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLS-----NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECT-----TSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECC-----CCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcch
Confidence 455666666666 555333 23344455666666666666655442 233333 56666666665333333
Q ss_pred ----ccccccCCCceee
Q 043587 219 ----KGIGKLVNMKHLL 231 (285)
Q Consensus 219 ----~~l~~l~~L~~L~ 231 (285)
..+..+|+|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 1234555555554
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=2.5e-07 Score=72.04 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=78.0
Q ss_pred ccchhccccccEEeecCC-CCCCCCchhh---HHHHHHhcCCccceeeecccccccccCCCc----ccccccccCCCceE
Q 043587 112 PVSTRRIKRMRSLLIDGG-RSDHSSLNGE---ILEELFRELTSLRALDFCESYHSRSSLTPE----IPRNIEKLVHLRYL 183 (285)
Q Consensus 112 ~~~~~~l~~L~~L~l~~~-~~~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----~p~~i~~l~~L~~L 183 (285)
...+...+.|++|++++| . +... .....+...++|++|+|+ +|.+... +...+...+.|++|
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~-----i~~~g~~~l~~~L~~~~~L~~L~Ls-----~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMN-----IPVPTLKACAEALKTNTYVKKFSIV-----GTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTT-----CCHHHHHHHHHHHTTCCSCCEEECT-----TSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHhcCCCCCEEEecCCCC-----CCHHHHHHHHHHHHhCCCcCEEECc-----CCCCChHHHHHHHHHHHhCCCcCEE
Confidence 445566788899999888 6 2221 124445667889999998 7773322 34445556788899
Q ss_pred ecccccccc-----cchhhhcCCCccEEec--CCCCCcCc-----CcccccccCCCceeecCCCCC
Q 043587 184 SLSFQHIEK-----LPETLCELYNLETLDI--SGCFDLEE-----LPKGIGKLVNMKHLLNSRTSS 237 (285)
Q Consensus 184 ~l~~~~l~~-----lp~~i~~l~~L~~L~l--~~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~ 237 (285)
+|++|.++. +...+...++|++|++ ++|. ++. +...+...++|++|++++|.+
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 999888763 4556677788899999 7776 433 334455667888888888854
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.39 E-value=5.4e-07 Score=78.86 Aligned_cols=17 Identities=0% Similarity=-0.230 Sum_probs=9.6
Q ss_pred cchhccccccEEeecCC
Q 043587 113 VSTRRIKRMRSLLIDGG 129 (285)
Q Consensus 113 ~~~~~l~~L~~L~l~~~ 129 (285)
.+|.++.+|+.+.+..+
T Consensus 174 ~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKT 190 (401)
T ss_dssp STTTTCTTCCEEECTTS
T ss_pred HHhhCcccCCeeecCCC
Confidence 45555566666665544
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.36 E-value=1.5e-07 Score=85.95 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=57.7
Q ss_pred CCceeccccCCchhhhcccc----------------ccC-------------C-------CCCHHHHHHHHHHHHhhCCC
Q 043587 1 MSSLLLSYNDLPSKLKRCYL----------------SAE-------------E-------DEEMETIGEEYFGILAPRSF 44 (285)
Q Consensus 1 ~~~L~lSy~~L~~~lk~cf~----------------~~~-------------~-------~~~~~~~~~~~~~~Li~~~l 44 (285)
.++|++||++||.++|.||. +.. + ..+.+++++ |+++|++++|
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsL 442 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGA 442 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSS
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCC
Confidence 36899999999999999982 110 0 233567777 9999999999
Q ss_pred CccccccCCCceeeEecChHHHHHHHHhhcccee
Q 043587 45 FQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECL 78 (285)
Q Consensus 45 i~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~~~~ 78 (285)
++....+ ....|+|||+++++++.++.+++.
T Consensus 443 l~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 443 LLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 9987653 345799999999999988876654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=2e-07 Score=72.59 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=84.1
Q ss_pred hHHHHHHhcCCccceeeecccccccc-cCCCc----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEec
Q 043587 139 EILEELFRELTSLRALDFCESYHSRS-SLTPE----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDI 208 (285)
Q Consensus 139 ~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l 208 (285)
+.....+...+.|+.|+|+ +| .+... +...+...++|++|+|++|.+. .+...+...++|++|++
T Consensus 26 ~~l~~~l~~~~~L~~L~L~-----~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLN-----NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHHHTTCTTCCEEECT-----TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHhcCCCCCEEEec-----CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 3356668889999999999 77 63322 4455666789999999999976 34556667789999999
Q ss_pred CCCCCcCc-----CcccccccCCCceeec--CCCCCCcc----cCCCCCCCCcCCcccccc
Q 043587 209 SGCFDLEE-----LPKGIGKLVNMKHLLN--SRTSSVRY----MPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 209 ~~~~~~~~-----lp~~l~~l~~L~~L~l--~~~~~~~~----~p~~~~~l~~L~~L~l~~ 258 (285)
++|. ++. +...+...++|++|++ ++|.+... +...+...++|++|++++
T Consensus 101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 101 ESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp CSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 9998 544 4556777889999999 77866542 233455567788888776
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=1.3e-07 Score=77.80 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=63.5
Q ss_pred cccCCCceEecccccccccc---hhhhcCCCccEEecCCCCCcCcCcccccccC--CCceeecCCCCCCcccCC------
Q 043587 175 EKLVHLRYLSLSFQHIEKLP---ETLCELYNLETLDISGCFDLEELPKGIGKLV--NMKHLLNSRTSSVRYMPV------ 243 (285)
Q Consensus 175 ~~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~--~L~~L~l~~~~~~~~~p~------ 243 (285)
..+++|++|+|++|.++.++ ..+..+++|+.|+|++|. +..+ ..+..+. +|++|++++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46889999999999987654 566789999999999998 5555 3455565 899999999998876653
Q ss_pred -CCCCCCcCCcccccc
Q 043587 244 -GIGRLTGLRTLGEFT 258 (285)
Q Consensus 244 -~~~~l~~L~~L~l~~ 258 (285)
.+..+++|+.|+...
T Consensus 245 ~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHCTTCCEESSCB
T ss_pred HHHHHCcccCeECCcC
Confidence 256777888777543
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=8.6e-08 Score=73.56 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcC-ccccccc----CCCceeecCCCCCC-cccCCCCCCCCc
Q 043587 178 VHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEEL-PKGIGKL----VNMKHLLNSRTSSV-RYMPVGIGRLTG 250 (285)
Q Consensus 178 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l----~~L~~L~l~~~~~~-~~~p~~~~~l~~ 250 (285)
..|+.|++++|.++.. -..+.++++|+.|++++|..++.. -..+..+ ++|++|++++|... ..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688888888886622 245677888888888888755542 1234433 36888888888532 211122334444
Q ss_pred CCcccccc
Q 043587 251 LRTLGEFT 258 (285)
Q Consensus 251 L~~L~l~~ 258 (285)
|+.|++++
T Consensus 141 L~~L~L~~ 148 (176)
T 3e4g_A 141 LKYLFLSD 148 (176)
T ss_dssp CCEEEEES
T ss_pred CCEEECCC
Confidence 44444444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=2.5e-06 Score=73.49 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=6.9
Q ss_pred hccccccEEeecCC
Q 043587 116 RRIKRMRSLLIDGG 129 (285)
Q Consensus 116 ~~l~~L~~L~l~~~ 129 (285)
..+++|+.|.+.++
T Consensus 169 ~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 169 DAMPLLNNLKIKGT 182 (362)
T ss_dssp HTCTTCCEEEEECC
T ss_pred hcCCCCcEEEEeCC
Confidence 34455555555444
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.29 E-value=1.3e-06 Score=76.46 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=18.7
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeec
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFC 157 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 157 (285)
+|.++ +|+.+.+..+ ...+...+|.++++|+.+++.
T Consensus 153 aF~~~-~L~~i~lp~~-------l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 153 AFFNS-TVQEIVFPST-------LEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp TTTTC-CCCEEECCTT-------CCEECSSTTTTCTTCCEEECT
T ss_pred hcCCC-CceEEEeCCC-------ccEehHHHhhCcccCCeeecC
Confidence 44442 4666666542 223334446666666666665
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=2e-06 Score=65.87 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=14.5
Q ss_pred CccEEecCCCCCcCcC-cccccccCCCceeecCCC
Q 043587 202 NLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRT 235 (285)
Q Consensus 202 ~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~ 235 (285)
+|+.|++++|..++.- -..+..+++|++|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 3455555554433221 122334445555555544
No 156
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.13 E-value=0.00021 Score=70.96 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=55.0
Q ss_pred CceeccccCCchhhhccc-----cccCCC----------CCHHHHHHHHHHHHhhCCCCccccccCCCceeeEecChHHH
Q 043587 2 SSLLLSYNDLPSKLKRCY-----LSAEED----------EEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVH 66 (285)
Q Consensus 2 ~~L~lSy~~L~~~lk~cf-----~~~~~~----------~~~~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~ 66 (285)
.+|++||+.||++.|.|| ++.... ...++.++.++++|++++|++... +++...|+||++++
T Consensus 366 ~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~ 442 (1249)
T 3sfz_A 366 EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQV 442 (1249)
T ss_dssp HHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEec---CCCceEEEecHHHH
Confidence 368899999999999999 222111 112467889999999999998654 34445799999999
Q ss_pred HHHHHhhccc
Q 043587 67 DFAQFVSENE 76 (285)
Q Consensus 67 ~~~~~~~~~~ 76 (285)
++++..+.++
T Consensus 443 ~~~~~~~~~~ 452 (1249)
T 3sfz_A 443 DFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHhhhhHH
Confidence 9999887654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.11 E-value=0.001 Score=57.76 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=79.1
Q ss_pred chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587 114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL 193 (285)
Q Consensus 114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l 193 (285)
.+.++..++.+.+..+. ..+....|..+..++.+... ... ++ ...+..+.+|+.+.+..+ ++.+
T Consensus 248 ~f~~~~~l~~~~~~~~~-------~~i~~~~F~~~~~l~~~~~~-----~~~-i~--~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK-------LRIGGSLFYNCSGLKKVIYG-----SVI-VP--EKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp TTTTCSSCCEEEECCTT-------CEECSCTTTTCTTCCEEEEC-----SSE-EC--TTTTTTCTTCCEEEECTT-CCEE
T ss_pred cccccccceeEEcCCCc-------ceeeccccccccccceeccC-----cee-ec--cccccccccccccccccc-ccee
Confidence 44455555555554442 11123334555555555544 222 11 134556777777777543 5555
Q ss_pred ch-hhhcCCCccEEecCCCCCcCcC-cccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCC
Q 043587 194 PE-TLCELYNLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLE 270 (285)
Q Consensus 194 p~-~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~ 270 (285)
++ ++.++.+|+.+++..+ ++.+ ...|.++.+|+.+.+..+ +...-...|..|.+|+++.+.. .......+.+++
T Consensus 312 ~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~ 388 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTT 388 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTC
T ss_pred chhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCC
Confidence 43 5667788888888653 4444 346777888888888655 4433345688888888887765 111223355555
Q ss_pred cCC
Q 043587 271 HLQ 273 (285)
Q Consensus 271 ~L~ 273 (285)
+|+
T Consensus 389 ~L~ 391 (394)
T 4fs7_A 389 KFK 391 (394)
T ss_dssp EEE
T ss_pred CCc
Confidence 554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.90 E-value=0.0025 Score=54.82 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=68.5
Q ss_pred ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEecccccc
Q 043587 112 PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHI 190 (285)
Q Consensus 112 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l 190 (285)
...+..+.+|+.+.+..+- ..+...+|.++..|+.+.+. .+ ...+ ...+..+..|+.+.+.. .+
T Consensus 210 ~~~f~~~~~l~~i~~~~~~-------~~i~~~~f~~~~~L~~i~lp-----~~--v~~I~~~aF~~~~~l~~i~l~~-~i 274 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSGV-------TTLGDGAFYGMKALDEIAIP-----KN--VTSIGSFLLQNCTALKTLNFYA-KV 274 (379)
T ss_dssp TTTTTTCSSCSEEECCTTC-------CEECTTTTTTCSSCCEEEEC-----TT--CCEECTTTTTTCTTCCEEEECC-CC
T ss_pred ecccccccccceeeeccce-------eEEccccccCCccceEEEcC-----CC--ccEeCccccceeehhccccccc-cc
Confidence 3455556666666664442 12233445666667777665 32 1222 23455566666666643 24
Q ss_pred cccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587 191 EKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF 257 (285)
Q Consensus 191 ~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 257 (285)
+.++. .+.++.+|+.+.+.++. ++.++ ..|.++.+|+.+.+..+ +...-..+|.+|.+|+++.+.
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred eeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 44443 34566667777666554 44332 34566666777766543 322223456666667666654
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.77 E-value=0.0028 Score=54.98 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=37.0
Q ss_pred hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587 196 TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT 258 (285)
Q Consensus 196 ~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 258 (285)
.+.++.+|+.+.+.++ ...++ ..+..+.+|+.+.+..+ +...-...+..+..|+.+.+..
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 4556677777777654 23333 34667777887777655 3323335577777777776654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.61 E-value=0.0034 Score=54.41 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=72.7
Q ss_pred HHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcC-cc
Q 043587 142 EELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEEL-PK 219 (285)
Q Consensus 142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~ 219 (285)
..+|.++..|+.+.+. .+. ...-...+..+..|+.+.+. +.++.++. .+.++.+|+.+.+..+ ++.+ ..
T Consensus 258 ~~aF~~c~~L~~i~lp-----~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMP-----DSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECC-----TTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred cceeeecccccEEecc-----ccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh
Confidence 3446667777777775 322 22223456667778887774 44566654 4556788888888653 4443 34
Q ss_pred cccccCCCceeecCCCCCCcccCCCCCCCCcCCccccccccCCccccccCCcCCCcee
Q 043587 220 GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGI 277 (285)
Q Consensus 220 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~l~~l~~L~~L~i 277 (285)
.|.++.+|+.+.+..+ +...-...|.+|.+|+.+.+.+.......+.....|+.+.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV 385 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence 5777888888888544 33222356788888888877662222233444555555544
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.48 E-value=0.0079 Score=51.66 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=56.3
Q ss_pred cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEeccccccc
Q 043587 113 VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHIE 191 (285)
Q Consensus 113 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l~ 191 (285)
..+.++..|+.+.+..+ ...+...+|.++.+|+.+.+. .+ ...+ ...+..+.+|+.+.+.++.++
T Consensus 234 ~~f~~~~~L~~i~lp~~-------v~~I~~~aF~~~~~l~~i~l~-----~~--i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-------VTSIGSFLLQNCTALKTLNFY-----AK--VKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp TTTTTCSSCCEEEECTT-------CCEECTTTTTTCTTCCEEEEC-----CC--CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred ccccCCccceEEEcCCC-------ccEeCccccceeehhcccccc-----cc--ceeccccccccccccccccccccccc
Confidence 34555666666666544 122233445666666666664 22 2222 234555666666666666666
Q ss_pred ccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCC
Q 043587 192 KLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSR 234 (285)
Q Consensus 192 ~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~ 234 (285)
.+++ .+.++.+|+.+.+..+ ++.++ ..|.++.+|+.+.+..
T Consensus 300 ~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 300 TLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred eehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 5543 4455666666666542 33332 3455666666666543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.33 E-value=0.0036 Score=54.26 Aligned_cols=126 Identities=13% Similarity=0.188 Sum_probs=87.7
Q ss_pred ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEecccccc
Q 043587 112 PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHI 190 (285)
Q Consensus 112 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l 190 (285)
..+|.++..|+.+.+..+. ..+...+|.++..|+.+.+. . . ...+ ...|..+.+|+.+.+..+ +
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-------~~I~~~aF~~c~~L~~i~l~-----~-~-i~~I~~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-------VSIGTGAFMNCPALQDIEFS-----S-R-ITELPESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-------CEECTTTTTTCTTCCEEECC-----T-T-CCEECTTTTTTCTTCCEEECCTT-C
T ss_pred cceeeecccccEEeccccc-------ceecCcccccccccccccCC-----C-c-ccccCceeecCCCCcCEEEeCCc-c
Confidence 3467888999999887653 23345668889999999986 2 3 3344 356778999999999754 6
Q ss_pred cccch-hhhcCCCccEEecCCCCCcCcC-cccccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587 191 EKLPE-TLCELYNLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF 257 (285)
Q Consensus 191 ~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 257 (285)
+.+.+ ++.++.+|+.+.+..+ +..+ ...|.++.+|+.+++.++.... ..+..+.+|+.+.+.
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred cEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 66654 6778999999999754 4455 4578899999999998774321 356677788877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.21 E-value=0.008 Score=43.42 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=28.1
Q ss_pred cccccccccCCCceEecccccccccchh-hhcCCCccEEecCCCC
Q 043587 169 EIPRNIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCF 212 (285)
Q Consensus 169 ~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 212 (285)
.+|..+ ..+|++|+|++|.++.+|.. +..+++|++|+|.+|.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 555443 23577777777777777653 4567777777777776
No 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.15 E-value=0.0016 Score=62.93 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=46.3
Q ss_pred CceeccccCCchhh-hccc-----cccCCCCCH-----------HHHHHHHHHHHhhCCCCccccccCCCceeeEecChH
Q 043587 2 SSLLLSYNDLPSKL-KRCY-----LSAEEDEEM-----------ETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDM 64 (285)
Q Consensus 2 ~~L~lSy~~L~~~l-k~cf-----~~~~~~~~~-----------~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~ 64 (285)
++|++||+.||++. |.|| ++....... ++.++.++++|++++|++... ....|+|||+
T Consensus 357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDL 431 (1221)
T 1vt4_I 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-----KESTISIPSI 431 (1221)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHH
Confidence 46899999999999 9999 221111111 235889999999999999732 2247899999
Q ss_pred HHHHH
Q 043587 65 VHDFA 69 (285)
Q Consensus 65 ~~~~~ 69 (285)
+++++
T Consensus 432 llELr 436 (1221)
T 1vt4_I 432 YLELK 436 (1221)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98865
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.07 E-value=0.009 Score=46.43 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=66.5
Q ss_pred hccccccEEeecCC-CCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc----ccccccccCCCceEecccccc
Q 043587 116 RRIKRMRSLLIDGG-RSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE----IPRNIEKLVHLRYLSLSFQHI 190 (285)
Q Consensus 116 ~~l~~L~~L~l~~~-~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----~p~~i~~l~~L~~L~l~~~~l 190 (285)
.+-+.|+.|+++++ ..... -...+...+..-+.|+.|+|+ +|++... +...+..=..|++|+|++|.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~--ga~~la~aL~~N~~L~~L~L~-----~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE--RIRSLIEAACNSKHIEKFSLA-----NTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH--HHHHHHHHHTTCSCCCEEECT-----TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHH--HHHHHHHHHhhCCCcCEEEcc-----CCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34467888888775 41000 001134446667788888888 7763322 333444456788888888887
Q ss_pred c-----ccchhhhcCCCccEEecCCCCC--cCc-----CcccccccCCCceeecCCC
Q 043587 191 E-----KLPETLCELYNLETLDISGCFD--LEE-----LPKGIGKLVNMKHLLNSRT 235 (285)
Q Consensus 191 ~-----~lp~~i~~l~~L~~L~l~~~~~--~~~-----lp~~l~~l~~L~~L~l~~~ 235 (285)
. .+-+.+..-+.|+.|+++++.. ++. +...+..=++|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 6 3334455556788888876531 221 2233444567888887655
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.65 E-value=0.021 Score=41.16 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=33.9
Q ss_pred eEeccccccc--ccchhhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCC
Q 043587 182 YLSLSFQHIE--KLPETLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSS 237 (285)
Q Consensus 182 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~ 237 (285)
.++-+++.++ .+|..+. .+|+.|+|++|. +..+|.. +..+++|+.|++.+|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5566666666 6665432 457777777776 5556543 46677777777777654
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.63 E-value=0.0059 Score=55.85 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=49.9
Q ss_pred ceeccccCCchhhhccc-----cccCCCCC----------HHHHHHHHHHHHhhCCCCccccccCCCceeeEecChHHHH
Q 043587 3 SLLLSYNDLPSKLKRCY-----LSAEEDEE----------METIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHD 67 (285)
Q Consensus 3 ~L~lSy~~L~~~lk~cf-----~~~~~~~~----------~~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~~ 67 (285)
+|.+||+.||++.|.|| ++.....+ ..+.+..+++.|+++++++.... +....|+||+++++
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~ 443 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVD 443 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHH
Confidence 57899999999999999 22111111 12356789999999999985432 33457999999999
Q ss_pred HHHHhh
Q 043587 68 FAQFVS 73 (285)
Q Consensus 68 ~~~~~~ 73 (285)
+++...
T Consensus 444 ~~~~~~ 449 (591)
T 1z6t_A 444 FLTEKN 449 (591)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 998763
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.51 E-value=0.026 Score=43.80 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=63.2
Q ss_pred HHHHHhcCCccceeeecccccccc-cCCCc-----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEecC
Q 043587 141 LEELFRELTSLRALDFCESYHSRS-SLTPE-----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDIS 209 (285)
Q Consensus 141 ~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~-----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~ 209 (285)
+...+..-+.|+.|+|+ ++ + ++. +...+..=..|+.|+|++|.+. .+.+.+..-+.|+.|+|+
T Consensus 33 l~~ll~~n~~L~~L~L~-----~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 33 INRLREDDTDLKEVNIN-----NMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHTTCSSCCEEECT-----TCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHhcCCCccEEECC-----CCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 45556778899999998 65 5 433 3345555678999999999977 344556666889999999
Q ss_pred CCCCcCc-----CcccccccCCCceeecCCC
Q 043587 210 GCFDLEE-----LPKGIGKLVNMKHLLNSRT 235 (285)
Q Consensus 210 ~~~~~~~-----lp~~l~~l~~L~~L~l~~~ 235 (285)
+|. ++. +-..+..=+.|++|++++|
T Consensus 107 ~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 107 SNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 998 442 2233444467999999865
No 169
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=29.84 E-value=5.9 Score=31.79 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=30.0
Q ss_pred ccCCchhhhccc-------cccCCCCCHHHHHHHHHHHHhhCCCCcccccc
Q 043587 8 YNDLPSKLKRCY-------LSAEEDEEMETIGEEYFGILAPRSFFQEFEKS 51 (285)
Q Consensus 8 y~~L~~~lk~cf-------~~~~~~~~~~~~~~~~~~~Li~~~li~~~~~~ 51 (285)
|+.||..+|.|| +...-+.-..+.|+..++.+++.|+.-+....
T Consensus 185 FeslP~emQ~afes~dld~lnkvl~~M~veeAe~h~~r~idsGLWvp~~~~ 235 (265)
T 1us7_B 185 YESLPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKA 235 (265)
T ss_dssp HHHSCTTCCCC-------CHHHHHTCCSSSHHHHHHHHHHHHTSSCCTTC-
T ss_pred HhhCCHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHHcCcccCCCCc
Confidence 678999999999 22111223337788899999999999765543
Done!