BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043588
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 146/350 (41%), Gaps = 27/350 (7%)
Query: 24 ASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGS-VAF 82
AS+ T T N+LS+GA + TD A AW AAC S + +P G Y L + V
Sbjct: 12 ASTKGATKTCNILSYGAVADNSTDVGPAITSAW-AACKS--GGLVYIPSGNYALNTWVTL 68
Query: 83 KGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKA 142
G S ++DG + YR + N ++ + + +KG+
Sbjct: 69 TG---GSATAIQLDGII-----YRTGTASGNMIAVTDTTDFELFSST--SKGAVQGFGYV 118
Query: 143 SGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTD 202
A GA LR T+ + ++ ++ +++ FH ++ C D + + I GN D
Sbjct: 119 YHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNM-AIRGGNEGGLD 177
Query: 203 GIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGV 262
GI V +N+ + + + D+C+ + N+ +E + C G ++GSL D V
Sbjct: 178 GIDV-WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDV 233
Query: 263 QXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNC 322
IKS +G V V + I + + ID Y
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDID-GYWSSMTAV 290
Query: 323 PGQVSGVKINDITYQDIRGTS---ATPIAIKFDCSTKYPCQGIKLQNINL 369
G GV++N+IT ++ +GT AT I+ CS PC + L++I +
Sbjct: 291 AGD--GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 20/222 (9%)
Query: 154 LRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVK 213
++ S N + + +NS FH+V + T+ P + NTDGI S N+
Sbjct: 154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNIT 213
Query: 214 ITNCTIKTGDDCIPIG-----PGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQXXXXX 268
I I TGDD + I T+N+ I G GHG+SIGS GV
Sbjct: 214 IAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETM-----GVYNVTVD 268
Query: 269 XXXXXXXXXXXRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNY-CPHNLNCPGQVS 327
RIKS + + G V GV + + +M+NV PIVID Y N P
Sbjct: 269 DLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW-- 325
Query: 328 GVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINL 369
+DIT++D+ + + + + + K P + + ++N+ L
Sbjct: 326 ----SDITFKDVTSETKGVVVLNGE-NAKKPIE-VTMKNVKL 361
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 146/344 (42%), Gaps = 46/344 (13%)
Query: 58 AACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNW--- 114
A+CTS I VP G L D+T GT V G + W
Sbjct: 16 ASCTSIILNGIVVPAGTTL-------------DMTGLKSGTTVTFQGKTTFGYKE-WEGP 61
Query: 115 -LSFEG----VSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIR---ING 166
+SF G ++G S G ++D +GS W K S G T +F +++++ I G
Sbjct: 62 LISFSGTNININGAS--GHSIDCQGSRWWDSKGSNG----GKTKPKFFYAHSLKSSNIKG 115
Query: 167 LLSLNSQMFHIVIN-----GCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT 221
L LN+ + IN G DV I+ + G NTD V ST V I+ +K
Sbjct: 116 LNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGG-HNTDAFDVGSSTGVYISGANVKN 174
Query: 222 GDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQXXXXXXXXXXXXXXXXRI 281
DDC+ I GT N+ TC GHG+SIGS+ + V+ RI
Sbjct: 175 QDDCLAINSGT-NITFTGGTCSGGHGLSIGSVGGRS-DNTVKTVTISNSKIVNSDNGVRI 232
Query: 282 KSWARPSNGFVQGVSFIDAIMRNV-QFPIVIDQNYCPHNLNCPGQ-VSGVKINDITYQDI 339
K+ + G V GV++ + N+ ++ IVI+Q+Y N + G +GV I +T I
Sbjct: 233 KT-VSGATGSVSGVTYSGITLSNIAKYGIVIEQDY--ENGSPTGTPTNGVPITGLTLSKI 289
Query: 340 RGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNV 383
G+ A+ + C K +++ K+ + C+N+
Sbjct: 290 TGSVASSGTNVYILCASGACSNWKWSGVSVTGGKK--STKCSNI 331
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 122/293 (41%), Gaps = 41/293 (13%)
Query: 58 AACTSTESATINVPKGRYLL------GSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQA 111
A C++ VP G L+ +V GD + T +DG L + + G
Sbjct: 15 AGCSAVTLNGFTVPAGNTLVLNPDKGATVTMAGDITFAKTT--LDGPL-----FTIDGTG 67
Query: 112 DNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLN 171
N++ + + D G+ W K + L+ S + +L+
Sbjct: 68 INFVGADHI---------FDGNGALYWDGKGTNNGTHKPHPFLKIKGSGTYKKFEVLNSP 118
Query: 172 SQMFHIVINGCKDVHI--EGVTVIA-PGNSPN----TDGIHVQLSTNVKITNCTIKTGDD 224
+Q + G D H+ +G+TV G++ N TDG V + NV I NC +K DD
Sbjct: 119 AQAISV---GPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDD 174
Query: 225 CIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQXXXXXXXXXXXXXXXXRIKSW 284
CI I G N+ E C GHGISIGS+A + V RIK+
Sbjct: 175 CIAINDG-NNIRFENNQCSGGHGISIGSIA---TGKHVSNVVIKGNTVTRSMYGVRIKAQ 230
Query: 285 ARPSNGFVQGVSF-IDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITY 336
++ V GV++ + I ++ ++I Q+Y P ++ PG +G +D+ +
Sbjct: 231 RTATSASVSGVTYDANTISGIAKYGVLISQSY-PDDVGNPG--TGAPFSDVNF 280
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 135/318 (42%), Gaps = 42/318 (13%)
Query: 70 VPKGRYL-LGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGG 128
VP G+ L L S+ S +TF+ T AD N + G S ++I G
Sbjct: 28 VPTGKQLDLSSLQ-----NDSTVTFKGTTTFATTADNDF-----NPIVISG-SNITITGA 76
Query: 129 A---LDAKGSSLWACKASGANC---PDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGC 182
+ +D G + W K S +N PD ++ T N+ +I L N + I G
Sbjct: 77 SGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNS-KITNLNIQNWPVHCFDITGS 135
Query: 183 KDVHIEGVTVI-APGNSPN-----------TDGIHVQLSTNVKITNCTIKTGDDCIPIGP 230
+ I G+ + G+ PN TDG + S +V + N + DDC+ +
Sbjct: 136 SQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTS 195
Query: 231 GTKNLWIERVTCGPGHGISIGSLA--KDLIEEGVQXXXXXXXXXXXXXXXXRIKSWARPS 288
GT N+ + + C GHG+SIGS+ D + +GVQ RIKS + +
Sbjct: 196 GT-NIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQ---FLSSQVVNSQNGCRIKSNSGAT 251
Query: 289 NGFVQGVSFIDAIMRNVQ-FPIVIDQNYCPHNLNCPGQ-VSGVKINDITYQDIRGTSATP 346
G + V++ + + N+ + + + Q+Y N G+ +GVKI++I + + GT A+
Sbjct: 252 -GTINNVTYQNIALTNISTYGVDVQQDYL--NGGPTGKPTNGVKISNIKFIKVTGTVASS 308
Query: 347 IAIKFDCSTKYPCQGIKL 364
F C G
Sbjct: 309 AQDWFILCGDGSCSGFTF 326
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 21/226 (9%)
Query: 127 GGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIR---INGLLSLNSQMFHIVINGCK 183
G +D GS W K + G T +F +++ G+ N+ + I +
Sbjct: 77 GAVIDGDGSRWWDSKGTNG----GKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-AT 131
Query: 184 DVHIEGVTVI-APGNS---PNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIER 239
+VH+ T+ + G+ NTDG + ST V I+ T+K DDCI I G +++
Sbjct: 132 NVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTG 190
Query: 240 VTCGPGHGISIGSL-AKDLIEEGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVSFI 298
TC GHG+SIGS+ +D + V+ RIK+ + + G V +++
Sbjct: 191 GTCSGGHGLSIGSVGGRD--DNTVKNVTISDSTVSNSANGVRIKTIYKET-GDVSEITYS 247
Query: 299 DAIMRNV-QFPIVIDQNYCPHNLNCPGQVS-GVKINDITYQDIRGT 342
+ + + + IVI+Q+Y N + G S G+ I D+T + GT
Sbjct: 248 NIQLSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGT 291
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 127/346 (36%), Gaps = 87/346 (25%)
Query: 34 NVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITF 93
N+L FGA+G+G TD +++F +A + I VP+G +L G + K S+I
Sbjct: 29 NLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLI-VPEGVFLTGPIHLK-----SNIEL 82
Query: 94 RIDGTL-VAPADYRVLGQADNWLSFEGVS--------------GVSIIG-GALDA----- 132
+ GT+ P R L FEG+ V+I G G LD
Sbjct: 83 HVKGTIKFIPDPERYLPVV--LTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNE 140
Query: 133 -----KGSSLWACKASGANCPDGATTLR--------------------------FTNSNN 161
KG + K N + L+ F N
Sbjct: 141 HWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRN 200
Query: 162 IRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT 221
+ + G+ +NS M+ I ++V I + + + G PN DGI + + I C T
Sbjct: 201 VLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG--PNNDGIDPESCKYMLIEKCRFDT 258
Query: 222 GDDCIPIGPG-----------------TKNLWIERVTCGPGHGISIGSLAKDLIEEGVQX 264
GDD + I G NL I + + G G+ IGS GV+
Sbjct: 259 GDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG---GLVIGSEMSG----GVRN 311
Query: 265 XXXXXXXXXXXXXXXRIKSWARPSNGFVQGVSFIDAIMRNVQFPIV 310
R+K+ +R G+++ + FID + NV ++
Sbjct: 312 VVARNNVYMNVERALRLKTNSR-RGGYMENIFFIDNVAVNVSEEVI 356
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 117/281 (41%), Gaps = 62/281 (22%)
Query: 115 LSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIR---INGLLSLN 171
L+ G SG SI G GS W G N G T +F ++++ I+GL +N
Sbjct: 74 LTITGASGHSING-----DGSRWW--DGEGGN--GGKTKPKFFAAHSLTNSVISGLKIVN 124
Query: 172 SQMFHIVINGCKDVHIEGVTVI-APGNS---PNTDGIHVQLSTNVKITNCTIKTGDDCIP 227
S + + G + ++ +T+ + G+ NTD + ST V I+ T+ DDC+
Sbjct: 125 SPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVA 184
Query: 228 IGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQXXXXXXXXXXXXXXXXRIKSWARP 287
+ G +N++ C GHG+SIGS+ R
Sbjct: 185 VNSG-ENIYFSGGYCSGGHGLSIGSVG------------------------------GRS 213
Query: 288 SNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPI 347
N V+ V+F+D+ + N + I N++ G VS D+TY+DI TS
Sbjct: 214 DN-TVKNVTFVDSTIINSDNGVRIKT-----NIDTTGSVS-----DVTYKDITLTSIAKY 262
Query: 348 AI----KFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVI 384
I + ++ P G+ + + L ++ SS N++
Sbjct: 263 GIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNIL 303
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 200 NTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIE 259
NTD V S V I + DDC+ + G +N+W TC GHG+SIGS+ D
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVG-DRSN 235
Query: 260 EGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVSFIDAIMRNV-QFPIVIDQNYCPH 318
V+ RIK+ + G V +++ + +M + + +VI Q+Y
Sbjct: 236 NVVKNVTIEHSTVSNSENAVRIKT-ISGATGSVSEITYSNIVMSGISDYGVVIQQDY--- 291
Query: 319 NLNCPGQVSGVKINDITYQDIRGTSAT 345
G+ +G N +T QD++ S T
Sbjct: 292 ---EDGKPTGKPTNGVTIQDVKLESVT 315
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 163/444 (36%), Gaps = 102/444 (22%)
Query: 24 ASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFK 83
A + A NV FGA +G T +T+A +A D+ C + +P G Y G++ K
Sbjct: 148 AKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDS-CKP--GCRVEIPAGTYKSGALWLK 204
Query: 84 GD----CKSSDITFRIDGTLVAPADYRV------------LGQADNWLSFEGV-SGVSII 126
D ++ I + PA YR+ + D S G + I
Sbjct: 205 SDMTLNLQAGAILLGSENPDDYPAGYRLYPYSTIERPASLINAIDPNNSKPGTFRNIRIT 264
Query: 127 G-GALDAKGSSLWACKASGANCPD--GATTLRFTNSNNIRI--NGLLSLNS--------- 172
G G +D G W +A A D G + ++ S N ++ +G+L+ N
Sbjct: 265 GSGVIDGNG---W-LRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAVSDGM 320
Query: 173 ---------QMFHIVINGCKDVHIEGVTVIAPG----------------------NSPNT 201
+ + + G ++V++ G TV P ++ N
Sbjct: 321 DLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQTYDANNG 380
Query: 202 DGIHVQLSTNVKITNCTIKTGDDCIPIGPGT----------KNLWIERVTCGPGHGISI- 250
DGI S NV + N TGDDCI GT K W+ GHG +
Sbjct: 381 DGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVT 440
Query: 251 ----GSLAKDLIEEGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVSFIDAIMRNVQ 306
G+ +D++ E R KS + G + V+F + MR++
Sbjct: 441 GSHTGAWIEDILAEN--------NVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLA 491
Query: 307 FPI-VIDQNYCPHNLN-------CPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYP 358
+ V+ +Y N N P Q + ++T + G + + I IK D + K
Sbjct: 492 KQVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGKNPS-IEIKGDTANKAW 550
Query: 359 CQGIKLQNINLRHLKQVAQSSCNN 382
+ + + N+ L ++ A S +
Sbjct: 551 HRLVHVNNVQLNNVTPTAISDLRD 574
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 125 IIGGALDAKGSSLWACKA-SGANCPDGATTLR----FTNSNNIRINGLLSLNSQ----MF 175
I+GG+LDAKGS W K S N GAT + T + N+R+ ++
Sbjct: 103 IMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTL 162
Query: 176 HIVINGCKDVHIEGVTVIAPGNS 198
+ + ++V IE V + P NS
Sbjct: 163 RLYVGKKQEVEIEKV-IFHPDNS 184
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 35 VLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLL 77
V ++GAKG+GVTD +AF KA ++ + VP G +++
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIESGF------PVYVPYGTFMV 61
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 35 VLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLL 77
V ++GAKG+GVTD +AF KA ++ + VP G +++
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIESGF------PVYVPYGTFMV 61
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 34 NVLSFGAKGNGVTDSTQAFAKAWDAA--------CTSTESATINVPKGRYLLGS 79
NV ++GAKG+G TD T A A +A T+T+ A + P G Y + S
Sbjct: 51 NVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSS 104
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 25 SSYATTTTYNVLSFGAKGNGVTDSTQA----FAKA------WDAACTSTESATINVPKGR 74
+ YA + +V S GAKG+G TD TQA FAK + A T + TI +P G
Sbjct: 393 TGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCKIIFFDAGTYIVTDTIQIPAGT 452
Query: 75 YLLGSV 80
++G V
Sbjct: 453 QIVGEV 458
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 35 VLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFR 94
V FGA GN +D + A +A +A T+ +P G Y + K S++ R
Sbjct: 25 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMK-----SNVHIR 79
Query: 95 IDGTLV 100
++ ++
Sbjct: 80 VESDVI 85
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 35 VLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFR 94
V FGA GN +D + A +A +A T+ +P G Y + K S++ R
Sbjct: 26 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMK-----SNVHIR 80
Query: 95 IDGTLV 100
++ ++
Sbjct: 81 VESDVI 86
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 33 YNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGD 85
YNV FGA G+GV+D +A +A A + T+ +P G Y + + GD
Sbjct: 3 YNVKDFGALGDGVSDD-RASIQAAIDAAYAAGGGTVYLPAGEYRVSAAGEPGD 54
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 34 NVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITF 93
++L FG +GVTD+ QA A DA + + +P +G +
Sbjct: 53 SILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYI------------- 99
Query: 94 RIDGTLVAP--ADYRVLGQADNWLSFEGVSGVSIIGGALDAK--GSSLWACKASGANCPD 149
+ TL+ P + R +G+A + G++G S++ + D+ G L + +G N +
Sbjct: 100 -VGSTLLIPGGVNIRGVGKASQLRAKSGLTG-SVLRLSYDSDTIGRYLRNIRVTGNNTCN 157
Query: 150 GATT 153
G T
Sbjct: 158 GIDT 161
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 34 NVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITF 93
++L FG +GVTD+ QA A DA + + +P +G +
Sbjct: 53 SILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYI------------- 99
Query: 94 RIDGTLVAPA--DYRVLGQADNWLSFEGVSGVSIIGGALDAK--GSSLWACKASGANCPD 149
+ TL+ P + R +G+A + G++G S++ + D+ G L + +G N +
Sbjct: 100 -VGSTLLIPGGVNIRGVGKASQLRAKSGLTG-SVLRLSYDSDTIGRYLRNIRVTGNNTCN 157
Query: 150 GATT 153
G T
Sbjct: 158 GIDT 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,145,603
Number of Sequences: 62578
Number of extensions: 450590
Number of successful extensions: 958
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 27
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)