Query 043588
Match_columns 397
No_of_seqs 241 out of 1687
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1.4E-78 3E-83 585.4 46.9 378 19-397 14-392 (394)
2 PLN02793 Probable polygalactur 100.0 1.4E-75 3E-80 573.2 49.5 365 31-397 51-423 (443)
3 PLN02218 polygalacturonase ADP 100.0 2.1E-74 4.5E-79 562.4 45.7 365 25-397 60-431 (431)
4 PLN03003 Probable polygalactur 100.0 1.4E-74 3.1E-79 561.1 41.8 367 23-397 14-389 (456)
5 PLN03010 polygalacturonase 100.0 2.6E-73 5.7E-78 549.6 48.2 355 29-397 43-403 (409)
6 PLN02188 polygalacturonase/gly 100.0 3.3E-74 7.2E-79 557.4 42.0 365 29-397 33-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.7E-56 3.6E-61 427.9 32.4 322 60-387 1-324 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.3E-41 2.9E-46 334.8 28.1 271 29-311 79-404 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 2.6E-25 5.7E-30 212.7 24.7 244 32-304 37-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 4.1E-21 8.9E-26 174.7 22.0 213 32-279 1-224 (225)
11 PLN02793 Probable polygalactur 99.9 2.4E-19 5.2E-24 176.6 29.5 218 90-345 144-398 (443)
12 PLN02188 polygalacturonase/gly 99.9 7.1E-19 1.5E-23 171.3 29.2 220 90-344 123-377 (404)
13 PLN03003 Probable polygalactur 99.8 2.8E-18 6E-23 167.8 29.2 218 90-344 114-360 (456)
14 PLN02218 polygalacturonase ADP 99.8 2.2E-18 4.7E-23 169.1 28.2 217 90-343 157-410 (431)
15 PLN02155 polygalacturonase 99.8 3.8E-18 8.2E-23 165.5 28.2 198 113-345 146-367 (394)
16 PF00295 Glyco_hydro_28: Glyco 99.8 2E-18 4.4E-23 165.4 25.5 217 90-343 61-310 (326)
17 PLN03010 polygalacturonase 99.8 2E-17 4.2E-22 160.9 29.8 204 152-380 131-358 (409)
18 PF03718 Glyco_hydro_49: Glyco 99.8 1.8E-17 4E-22 160.3 28.9 272 65-370 232-552 (582)
19 TIGR03805 beta_helix_1 paralle 99.8 4E-16 8.6E-21 148.3 25.9 197 52-305 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 7.9E-12 1.7E-16 124.5 17.7 154 173-344 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.1 1.7E-08 3.7E-13 96.2 23.6 175 115-313 58-251 (314)
22 PF12541 DUF3737: Protein of u 98.9 1.1E-07 2.4E-12 85.2 15.6 95 181-309 135-229 (277)
23 PF03718 Glyco_hydro_49: Glyco 98.8 6.2E-07 1.4E-11 88.0 20.7 244 63-343 254-553 (582)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.8 4E-07 8.7E-12 88.4 17.3 145 153-311 108-290 (455)
25 PF13229 Beta_helix: Right han 98.7 1.7E-07 3.7E-12 79.7 12.8 140 153-312 2-145 (158)
26 COG3866 PelB Pectate lyase [Ca 98.7 9.3E-07 2E-11 80.7 16.0 101 175-275 117-229 (345)
27 PF12541 DUF3737: Protein of u 98.6 6.6E-07 1.4E-11 80.3 12.7 136 118-280 95-230 (277)
28 PRK10123 wcaM putative colanic 98.6 3.3E-06 7.1E-11 76.6 16.9 224 29-302 31-282 (464)
29 COG3420 NosD Nitrous oxidase a 98.6 2.3E-05 5E-10 72.7 21.9 187 63-282 32-222 (408)
30 PF14592 Chondroitinas_B: Chon 98.6 1.7E-05 3.6E-10 77.2 21.4 202 48-281 3-241 (425)
31 PLN02480 Probable pectinestera 98.6 1.7E-05 3.6E-10 75.9 21.1 199 46-304 57-276 (343)
32 smart00656 Amb_all Amb_all dom 98.5 6.5E-06 1.4E-10 72.7 16.7 143 175-339 32-189 (190)
33 PF05048 NosD: Periplasmic cop 98.5 5.6E-06 1.2E-10 75.9 16.7 113 153-281 37-151 (236)
34 PF13229 Beta_helix: Right han 98.5 1.4E-06 3.1E-11 74.0 11.8 117 176-313 2-121 (158)
35 PF07602 DUF1565: Protein of u 98.5 1.1E-05 2.3E-10 73.4 17.4 169 48-282 14-195 (246)
36 PLN02773 pectinesterase 98.4 0.00013 2.9E-09 69.0 23.0 47 48-97 16-63 (317)
37 PF05048 NosD: Periplasmic cop 98.4 1E-05 2.2E-10 74.3 14.8 135 153-311 15-151 (236)
38 PLN02176 putative pectinestera 98.4 0.00021 4.6E-09 68.2 23.5 197 48-304 50-270 (340)
39 COG3866 PelB Pectate lyase [Ca 98.3 7E-05 1.5E-09 68.7 18.5 178 91-311 77-282 (345)
40 PLN02497 probable pectinestera 98.3 0.00019 4.1E-09 68.2 22.0 48 47-97 42-90 (331)
41 PLN02634 probable pectinestera 98.3 0.0004 8.7E-09 66.6 23.1 48 47-97 66-114 (359)
42 PLN02665 pectinesterase family 98.3 0.00056 1.2E-08 66.0 24.3 47 48-97 79-126 (366)
43 PF00544 Pec_lyase_C: Pectate 98.2 4.2E-05 9E-10 68.2 13.0 99 176-275 38-158 (200)
44 smart00656 Amb_all Amb_all dom 98.1 0.00013 2.9E-09 64.4 15.9 118 154-281 34-173 (190)
45 PRK10531 acyl-CoA thioesterase 98.1 0.00095 2.1E-08 65.3 22.1 52 42-97 88-141 (422)
46 PLN02170 probable pectinestera 98.1 0.0016 3.6E-08 65.5 23.5 202 47-304 235-451 (529)
47 PLN02484 probable pectinestera 98.0 0.0013 2.9E-08 67.5 22.8 207 48-304 283-508 (587)
48 PLN02933 Probable pectinestera 98.0 0.0019 4.2E-08 65.2 23.2 148 47-243 228-384 (530)
49 PLN02682 pectinesterase family 98.0 0.003 6.4E-08 61.0 23.2 48 47-97 80-128 (369)
50 PLN02708 Probable pectinestera 98.0 0.0011 2.4E-08 67.7 21.0 48 47-97 251-300 (553)
51 PLN02916 pectinesterase family 98.0 0.0027 5.9E-08 63.6 22.7 179 47-275 197-392 (502)
52 PLN02671 pectinesterase 97.9 0.0022 4.9E-08 61.6 21.0 48 47-97 69-117 (359)
53 PLN02201 probable pectinestera 97.9 0.0036 7.9E-08 63.2 23.0 178 47-275 216-408 (520)
54 PF01095 Pectinesterase: Pecti 97.9 0.00072 1.6E-08 64.0 17.0 48 47-97 10-58 (298)
55 PLN02432 putative pectinestera 97.9 0.0027 5.9E-08 59.5 19.7 47 48-97 22-69 (293)
56 PLN02713 Probable pectinestera 97.9 0.0013 2.8E-08 67.3 18.9 206 48-304 261-488 (566)
57 PLN02304 probable pectinestera 97.9 0.0068 1.5E-07 58.6 22.6 48 47-97 85-133 (379)
58 PF12708 Pectate_lyase_3: Pect 97.8 0.0014 3E-08 59.1 17.2 123 162-309 94-224 (225)
59 PLN02301 pectinesterase/pectin 97.8 0.0047 1E-07 62.9 22.4 178 48-275 247-438 (548)
60 PLN02990 Probable pectinestera 97.8 0.0069 1.5E-07 62.1 23.7 177 48-275 270-462 (572)
61 PLN02506 putative pectinestera 97.8 0.0057 1.2E-07 62.2 22.2 201 48-304 243-458 (537)
62 PLN03043 Probable pectinestera 97.8 0.0024 5.3E-08 65.0 19.4 208 47-304 233-461 (538)
63 PLN02488 probable pectinestera 97.8 0.004 8.7E-08 62.2 20.4 178 47-275 207-399 (509)
64 PLN02995 Probable pectinestera 97.8 0.0024 5.2E-08 65.0 18.8 208 47-305 233-461 (539)
65 PLN02416 probable pectinestera 97.7 0.0033 7.2E-08 64.0 19.0 148 47-243 240-396 (541)
66 PLN02197 pectinesterase 97.6 0.011 2.3E-07 60.9 21.3 211 47-304 285-513 (588)
67 PLN02217 probable pectinestera 97.6 0.0079 1.7E-07 62.5 20.5 206 48-304 261-485 (670)
68 PLN02745 Putative pectinestera 97.6 0.014 2.9E-07 60.3 22.0 205 48-304 296-520 (596)
69 PLN02314 pectinesterase 97.6 0.006 1.3E-07 62.9 18.8 206 48-305 289-509 (586)
70 PLN02468 putative pectinestera 97.6 0.011 2.4E-07 60.7 20.5 207 48-304 269-489 (565)
71 PF00544 Pec_lyase_C: Pectate 97.6 0.0014 3E-08 58.4 12.5 116 157-282 43-188 (200)
72 PLN02313 Pectinesterase/pectin 97.6 0.0084 1.8E-07 61.8 19.4 179 48-276 286-478 (587)
73 COG3420 NosD Nitrous oxidase a 97.2 0.0048 1E-07 57.7 11.7 114 115-244 123-236 (408)
74 PF01696 Adeno_E1B_55K: Adenov 97.2 0.084 1.8E-06 51.0 19.9 154 34-248 45-204 (386)
75 COG4677 PemB Pectin methyleste 97.2 0.078 1.7E-06 49.6 18.7 48 47-97 92-141 (405)
76 PF12218 End_N_terminal: N ter 97.1 0.00086 1.9E-08 46.2 3.9 41 40-83 1-41 (67)
77 PF03211 Pectate_lyase: Pectat 96.0 0.35 7.6E-06 43.1 14.3 56 184-245 62-118 (215)
78 PF03211 Pectate_lyase: Pectat 95.7 1.2 2.6E-05 39.8 16.5 133 159-299 60-194 (215)
79 PLN02480 Probable pectinestera 95.3 0.68 1.5E-05 44.6 14.6 113 179-305 128-252 (343)
80 PF07602 DUF1565: Protein of u 95.0 1.4 3.1E-05 40.3 15.2 135 176-343 90-226 (246)
81 PF01696 Adeno_E1B_55K: Adenov 94.8 4.4 9.6E-05 39.4 19.1 85 180-279 118-204 (386)
82 TIGR03804 para_beta_helix para 94.0 0.079 1.7E-06 34.6 3.5 39 177-220 2-40 (44)
83 PRK10531 acyl-CoA thioesterase 94.0 2.6 5.6E-05 41.7 15.2 115 180-305 203-336 (422)
84 PLN02773 pectinesterase 93.9 2.7 5.8E-05 40.1 14.9 80 155-243 97-181 (317)
85 PLN02671 pectinesterase 93.8 3.9 8.5E-05 39.6 16.0 18 155-172 149-166 (359)
86 PLN02468 putative pectinestera 93.8 2.7 5.9E-05 43.4 15.8 116 179-306 341-461 (565)
87 TIGR03804 para_beta_helix para 93.5 0.13 2.7E-06 33.6 3.8 41 203-244 1-41 (44)
88 PLN02176 putative pectinestera 93.3 2.6 5.7E-05 40.6 13.9 113 180-305 119-246 (340)
89 PLN02698 Probable pectinestera 93.1 1.4 3E-05 44.8 12.2 77 158-243 268-349 (497)
90 PLN02745 Putative pectinestera 93.1 2.1 4.6E-05 44.5 13.7 117 178-306 367-488 (596)
91 PLN02197 pectinesterase 91.4 2.9 6.3E-05 43.3 12.3 116 178-306 359-481 (588)
92 PLN02217 probable pectinestera 90.3 7.5 0.00016 40.9 14.1 116 179-306 333-453 (670)
93 PF01095 Pectinesterase: Pecti 90.0 3.3 7.2E-05 39.2 10.5 79 156-243 83-166 (298)
94 PLN02170 probable pectinestera 89.0 15 0.00033 37.6 14.8 118 177-306 307-428 (529)
95 PF08480 Disaggr_assoc: Disagg 88.7 4.9 0.00011 34.8 9.4 22 183-208 2-23 (198)
96 PLN02916 pectinesterase family 87.9 21 0.00046 36.3 15.0 118 177-306 271-393 (502)
97 PF09251 PhageP22-tail: Salmon 87.7 30 0.00065 34.1 15.7 25 362-388 408-432 (549)
98 PRK10123 wcaM putative colanic 87.6 3.4 7.3E-05 38.3 8.3 77 204-283 262-357 (464)
99 PLN02506 putative pectinestera 87.2 14 0.00031 38.0 13.5 117 177-305 313-434 (537)
100 PLN02995 Probable pectinestera 87.1 18 0.0004 37.2 14.3 116 179-306 308-428 (539)
101 PLN02201 probable pectinestera 87.0 24 0.00052 36.2 14.9 117 177-305 287-408 (520)
102 PLN02314 pectinesterase 86.8 16 0.00036 38.0 13.9 118 177-306 359-481 (586)
103 PLN02698 Probable pectinestera 86.8 18 0.0004 36.8 14.0 117 178-306 265-386 (497)
104 PF09251 PhageP22-tail: Salmon 86.4 17 0.00036 35.7 12.6 35 233-270 311-345 (549)
105 PLN02713 Probable pectinestera 86.3 20 0.00044 37.2 14.1 116 178-305 335-455 (566)
106 PLN02301 pectinesterase/pectin 86.2 21 0.00045 36.9 14.0 117 178-306 318-439 (548)
107 PF14592 Chondroitinas_B: Chon 85.9 3 6.5E-05 41.2 7.6 22 291-312 308-329 (425)
108 PLN02933 Probable pectinestera 85.7 30 0.00064 35.6 14.8 117 177-305 299-420 (530)
109 PLN02416 probable pectinestera 85.5 22 0.00048 36.6 13.9 116 178-305 312-432 (541)
110 PLN02488 probable pectinestera 85.2 36 0.00078 34.7 14.9 116 179-306 280-400 (509)
111 PLN02484 probable pectinestera 84.8 30 0.00065 36.1 14.6 118 177-306 354-476 (587)
112 PLN02682 pectinesterase family 84.7 33 0.00071 33.5 14.0 81 154-243 157-247 (369)
113 PLN02432 putative pectinestera 84.6 34 0.00074 32.3 13.7 38 157-194 91-132 (293)
114 PF08480 Disaggr_assoc: Disagg 83.7 8.1 0.00017 33.5 8.2 63 210-277 2-78 (198)
115 PLN03043 Probable pectinestera 82.6 48 0.001 34.2 14.9 117 177-305 307-428 (538)
116 PLN02313 Pectinesterase/pectin 82.3 33 0.00071 35.8 13.7 117 178-306 357-478 (587)
117 PLN02708 Probable pectinestera 82.2 39 0.00084 35.0 14.1 79 156-243 326-409 (553)
118 PLN02304 probable pectinestera 75.3 87 0.0019 30.8 13.8 16 157-172 159-174 (379)
119 PLN02990 Probable pectinestera 74.4 72 0.0016 33.3 13.4 116 179-306 343-463 (572)
120 PLN02634 probable pectinestera 72.8 79 0.0017 30.8 12.4 79 156-243 145-233 (359)
121 PLN02665 pectinesterase family 70.0 1.1E+02 0.0024 29.9 12.8 137 154-304 148-297 (366)
122 PLN02497 probable pectinestera 67.4 1.2E+02 0.0026 29.3 12.3 78 157-243 112-201 (331)
123 COG4677 PemB Pectin methyleste 63.7 24 0.00052 33.6 6.5 15 158-172 187-201 (405)
124 smart00710 PbH1 Parallel beta- 47.2 25 0.00054 18.8 2.6 9 212-220 4-12 (26)
125 smart00722 CASH Domain present 41.7 1.8E+02 0.0039 23.2 11.9 68 157-227 73-144 (146)
126 COG4704 Uncharacterized protei 41.5 77 0.0017 26.1 5.3 36 46-81 59-95 (151)
127 PF15240 Pro-rich: Proline-ric 31.2 36 0.00077 29.5 2.1 24 12-35 2-25 (179)
128 KOG1777 Putative Zn-finger pro 27.6 72 0.0016 31.7 3.7 111 176-303 397-511 (625)
129 PRK13884 conjugal transfer pep 27.3 76 0.0016 27.6 3.5 13 1-13 1-13 (178)
130 COG3043 NapB Nitrate reductase 27.2 52 0.0011 27.4 2.3 18 1-18 2-19 (155)
131 smart00722 CASH Domain present 26.0 3.4E+02 0.0073 21.5 8.7 38 182-220 75-112 (146)
132 PF02373 JmjC: JmjC domain, hy 23.4 56 0.0012 25.4 1.9 15 63-77 86-100 (114)
133 PF10916 DUF2712: Protein of u 21.5 87 0.0019 26.0 2.6 9 1-9 1-9 (146)
134 COG4856 Uncharacterized protei 21.1 69 0.0015 31.2 2.2 26 1-26 1-26 (403)
135 PF11429 Colicin_D: Colicin D; 20.2 86 0.0019 24.1 2.1 38 36-77 10-48 (92)
136 PF05342 Peptidase_M26_N: M26 20.1 58 0.0013 29.9 1.4 17 328-344 211-227 (250)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.4e-78 Score=585.35 Aligned_cols=378 Identities=53% Similarity=0.986 Sum_probs=345.3
Q ss_pred HHHHHhccccCceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeeeccCCCcceEEEEccE
Q 043588 19 LSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGT 98 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~ 98 (397)
++.+...+..++.+++|+||||+|||.+|||+|||+||++||++++|++|+||+|+|+++++.|+++||| +++|+++|+
T Consensus 14 ~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~ 92 (394)
T PLN02155 14 LLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGT 92 (394)
T ss_pred HHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeE
Confidence 3344556667778999999999999999999999999987789999999999999999999999998999 999999999
Q ss_pred EEeeccccccCCCcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEE
Q 043588 99 LVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIV 178 (397)
Q Consensus 99 l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~ 178 (397)
|+++.++..|.....|+.+.+.+|+.|.||+|||+|+.||...+.+...+.+|++|.|.+|+|++|++++++|+|.|+++
T Consensus 93 l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~ 172 (394)
T PLN02155 93 VVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMT 172 (394)
T ss_pred EECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEE
Confidence 99988887776556799999999999999999999999998655544555678999999999999999999999999999
Q ss_pred EeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCC
Q 043588 179 INGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLI 258 (397)
Q Consensus 179 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~ 258 (397)
+..|+|++|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|++..
T Consensus 173 ~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~ 252 (394)
T PLN02155 173 LNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELN 252 (394)
T ss_pred EECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCC
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999987765
Q ss_pred cCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEEe
Q 043588 259 EEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQD 338 (397)
Q Consensus 259 ~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~n 338 (397)
.+.++||+|+||+|.++.+|++||+|.+.++|.|+||+|+|++|+++.+||.|++.|++....|+...+.+.|+||+|+|
T Consensus 253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~n 332 (394)
T PLN02155 253 EDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKN 332 (394)
T ss_pred CCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEe
Confidence 68899999999999999999999998654689999999999999999999999999987555555555678999999999
Q ss_pred EEEeeCCCceEEEeecCCCceecEEEEeEEEEeCC-CccceeeecccccccCeecCCCCC
Q 043588 339 IRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLK-QVAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 339 i~~~~~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~-~~~~~~c~nv~~~~~~~~~~~~~~ 397 (397)
|+++.....++.+.|++..||+||+|+||++..++ .+..++|.|+++.+.++++|.|||
T Consensus 333 i~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 333 IQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred eEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence 99998766789999999999999999999999876 446899999999999988999997
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.4e-75 Score=573.24 Aligned_cols=365 Identities=40% Similarity=0.753 Sum_probs=334.3
Q ss_pred eeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCc-eEEeeceeeeccCCCcceEEEEccEEEeeccccccC
Q 043588 31 TTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKG-RYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLG 109 (397)
Q Consensus 31 ~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~ 109 (397)
++++|+||||+|||.+|||+|||+||++||++.+|++|+||+| +|+++++.|.+++|| +++|+++|+|+++.++..|+
T Consensus 51 ~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 51 RVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred eEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHcc
Confidence 4899999999999999999999999997899999999999999 599999999888789 99999999999999998887
Q ss_pred CC--cceEEEecccceEEEc-eeeeCCCCccccccc--C-CCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEecee
Q 043588 110 QA--DNWLSFEGVSGVSIIG-GALDAKGSSLWACKA--S-GANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCK 183 (397)
Q Consensus 110 ~~--~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~--~-~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~ 183 (397)
.. ..|+.+.+.+|++|.| |+|||+|+.||.... + ......||++|.|.+|+|++|++++++|+|.|++++..|+
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~ 209 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCR 209 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccC
Confidence 43 4699999999999999 999999999996431 1 1223458999999999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEE
Q 043588 184 DVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQ 263 (397)
Q Consensus 184 nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ 263 (397)
|++|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||+|++...+.|+
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~ 289 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVR 289 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEE
Confidence 99999999999888899999999999999999999999999999999999999999999999999999998876667899
Q ss_pred EEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEee
Q 043588 264 NVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTS 343 (397)
Q Consensus 264 nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~ 343 (397)
||+|+||+|.++.+|++||+|.+ ++|.++||+|+|++|+++.+||.|++.|+.....|......+.|+||+|+||+++.
T Consensus 290 nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~ 368 (443)
T PLN02793 290 DITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS 368 (443)
T ss_pred EEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence 99999999999999999999987 78999999999999999999999999997654445555667899999999999998
Q ss_pred CCCceEEEeecCCCceecEEEEeEEEEeCC-CccceeeecccccccCeecCCCCC
Q 043588 344 ATPIAIKFDCSTKYPCQGIKLQNINLRHLK-QVAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 344 ~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~-~~~~~~c~nv~~~~~~~~~~~~~~ 397 (397)
....++.+.|+++.||+||+|+||+++..+ +...+.|.|+++...+.+.|.||+
T Consensus 369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccc
Confidence 656689999999999999999999999775 555799999999999999999996
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.1e-74 Score=562.40 Aligned_cols=365 Identities=42% Similarity=0.767 Sum_probs=332.4
Q ss_pred ccccCceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCc-eEEeeceeeeccCCCcceEEEEccEEEeec
Q 043588 25 SSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKG-RYLLGSVAFKGDCKSSDITFRIDGTLVAPA 103 (397)
Q Consensus 25 ~~~~~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~ 103 (397)
.+.+.+++++|+||||+|||.+|||+|||+|+++||++.++++|+||+| +|+++++.|++++|+ +++|+++|+|+++.
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~ 138 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQ 138 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCC
Confidence 4445678999999999999999999999999987899989999999999 699999999998889 99999999999999
Q ss_pred cccccCCCcceEEEecccceEEEc---eeeeCCCCcccccccC---CCCCCCCceeEEEEccCCeEEEeeEEecCcceEE
Q 043588 104 DYRVLGQADNWLSFEGVSGVSIIG---GALDAKGSSLWACKAS---GANCPDGATTLRFTNSNNIRINGLLSLNSQMFHI 177 (397)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~ni~I~G---G~idg~g~~~w~~~~~---~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i 177 (397)
++..|+....|+.+.+.+||+|.| |+|||+|+.||..... ...+..||+++.|.+|+|++|++++++|+|+|++
T Consensus 139 d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i 218 (431)
T PLN02218 139 KRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQI 218 (431)
T ss_pred ChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEE
Confidence 999997667899999999999999 9999999999975321 1223569999999999999999999999999999
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccC
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~ 257 (397)
++..|+|++|+|++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||++.+.
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~ 298 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDN 298 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCC
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999998765
Q ss_pred CcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEE
Q 043588 258 IEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQ 337 (397)
Q Consensus 258 ~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ 337 (397)
....|+||+|+||++.++.+|++||+|++ ++|.++||+|+|++|+++.+||.|++.|++.. .|+.....+.|+||+|+
T Consensus 299 ~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEE
Confidence 56789999999999999999999999987 88999999999999999999999999998643 25545567899999999
Q ss_pred eEEEeeCCCceEEEeecCCCceecEEEEeEEEEeCCCccceeeecccccccCeecCCCCC
Q 043588 338 DIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 338 ni~~~~~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~~~~~~~c~nv~~~~~~~~~~~~~~ 397 (397)
||+++.....++.+.|+++.||+||+|+||++.. ....|+||++...+.+.| +|.
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~----~~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKG----GKATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEEC----CeeeEEEeeEEEcccCCC-CCC
Confidence 9999987667899999999999999999999984 256899999999986655 994
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.4e-74 Score=561.14 Aligned_cols=367 Identities=40% Similarity=0.730 Sum_probs=329.7
Q ss_pred HhccccCceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCc-eEEeeceeeeccCCCcceEEEEccEEEe
Q 043588 23 LASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKG-RYLLGSVAFKGDCKSSDITFRIDGTLVA 101 (397)
Q Consensus 23 ~~~~~~~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~ 101 (397)
++-.+..+..+||+||||+|||.+|||+|||+|+++||++.+|++|+||+| +|+++++.|++++|+..++++++|++.+
T Consensus 14 ~~~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~a 93 (456)
T PLN03003 14 FLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVA 93 (456)
T ss_pred eeeeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEec
Confidence 334556678999999999999999999999999998899889999999999 5899999999888763488889999988
Q ss_pred eccccccCC-CcceEEEecccceEEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEE
Q 043588 102 PADYRVLGQ-ADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVI 179 (397)
Q Consensus 102 ~~~~~~~~~-~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~ 179 (397)
+.. ..|.. ...|+.+.++++++|.| |+|||+|+.||... ..||+++.|.+|+|++|+|++++|+|.|++++
T Consensus 94 p~~-~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i 166 (456)
T PLN03003 94 PSK-GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHI 166 (456)
T ss_pred Ccc-ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc------cCCceEEEEEecCCcEEeCeEEecCCcEEEEE
Confidence 654 34543 25699999999999999 99999999999742 35899999999999999999999999999999
Q ss_pred eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCc
Q 043588 180 NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIE 259 (397)
Q Consensus 180 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~ 259 (397)
..|+|++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||++++...
T Consensus 167 ~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~ 246 (456)
T PLN03003 167 SECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGET 246 (456)
T ss_pred eccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCc
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999876655
Q ss_pred CCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCC--CCCCccceEEEeEEEE
Q 043588 260 EGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLN--CPGQVSGVKINDITYQ 337 (397)
Q Consensus 260 ~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~i~nI~f~ 337 (397)
..|+||+|+||+|.++.+|++||+|.+ ++|.++||+|+|++|+++.+||.|++.|++.... |......+.|+||+|+
T Consensus 247 ~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~ 325 (456)
T PLN03003 247 ATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFS 325 (456)
T ss_pred ceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEE
Confidence 779999999999999999999999987 6899999999999999999999999999854321 2234456899999999
Q ss_pred eEEEeeCCCceEEEeecCCCceecEEEEeEEEEeCC----CccceeeecccccccCeecCCCCC
Q 043588 338 DIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLK----QVAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 338 ni~~~~~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~----~~~~~~c~nv~~~~~~~~~~~~~~ 397 (397)
||+++.....++.+.|++..||+||+|+||++...+ ++..+.|.||++.+.++++|.|||
T Consensus 326 NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 326 NFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred eEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 999988777789999999999999999999998762 346799999999999888888997
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.6e-73 Score=549.64 Aligned_cols=355 Identities=39% Similarity=0.740 Sum_probs=326.9
Q ss_pred CceeEEeeccCccCCCCcchHHHHHHHHHHhhccCC-CcEEEEcCc-eEEeeceeeeccCCCcceEEEEccEEEeecccc
Q 043588 29 TTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTE-SATINVPKG-RYLLGSVAFKGDCKSSDITFRIDGTLVAPADYR 106 (397)
Q Consensus 29 ~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~-g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~ 106 (397)
.+.+++|+||||+|||.+|||+|||+|++++|+..+ +++|+|||| +|+++++.|++++|+.+++|+++|+|+++.+..
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 567999999999999999999999999988775432 379999999 799999999987764389999999999999999
Q ss_pred ccCC--CcceEEEecccceEEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEecee
Q 043588 107 VLGQ--ADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCK 183 (397)
Q Consensus 107 ~~~~--~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~ 183 (397)
.|+. ...|+.+.+++|++|.| |+|||+|+.||. ++.|.+|+|++|++++++++|.|++++..|+
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~ 189 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIKTCN 189 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEeccc
Confidence 8964 24689999999999999 999999999995 5899999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEE
Q 043588 184 DVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQ 263 (397)
Q Consensus 184 nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ 263 (397)
+++|++++|.++..++|+|||++.+|++|+|+||+|.++||||++++++.++.|+++.|..+||++|||++.......|+
T Consensus 190 nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~ 269 (409)
T PLN03010 190 YVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVS 269 (409)
T ss_pred cEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeE
Confidence 99999999999888899999999999999999999999999999999999999999999999999999998766556799
Q ss_pred EEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEee
Q 043588 264 NVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTS 343 (397)
Q Consensus 264 nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~ 343 (397)
||+|+||+|.++.+|++||+|.+ ++|.++||+|+|++|+++++||.|++.|+.....|......+.|+||+|+||+++.
T Consensus 270 nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~ 348 (409)
T PLN03010 270 DVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTT 348 (409)
T ss_pred EEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEe
Confidence 99999999999999999999987 78999999999999999999999999998755555556788999999999999998
Q ss_pred CCCceEEEeecCCCceecEEEEeEEEEeCC-CccceeeecccccccCeecCCCCC
Q 043588 344 ATPIAIKFDCSTKYPCQGIKLQNINLRHLK-QVAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 344 ~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~-~~~~~~c~nv~~~~~~~~~~~~~~ 397 (397)
....++.+.|++..||+||+|+||+++.++ +++.+.|.|+++...+.+.|.|||
T Consensus 349 ~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 349 SNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred CCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 777799999999999999999999999876 567899999999999999999997
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=3.3e-74 Score=557.40 Aligned_cols=365 Identities=41% Similarity=0.779 Sum_probs=327.4
Q ss_pred CceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeeeccCCCcceEEEEccEEEeecccccc
Q 043588 29 TTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVL 108 (397)
Q Consensus 29 ~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~ 108 (397)
++.+++|+||||+|||.+|||+|||+||+++|++.+|++|+||+|+|+++++.|++++|+ ...|.+ +|+++.+.++|
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y 109 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRY 109 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHC
Confidence 456899999999999999999999999987899989999999999999999999987754 333444 99999999999
Q ss_pred CCCcceEEEecccceEEEc-eeeeCCCCccccccc--CCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecE
Q 043588 109 GQADNWLSFEGVSGVSIIG-GALDAKGSSLWACKA--SGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDV 185 (397)
Q Consensus 109 ~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~--~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv 185 (397)
+....|+.+..++|++|.| |+|||+|+.||.... .......||++|.|.+|+|++|++++++|+|.|++++..|+|+
T Consensus 110 ~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v 189 (404)
T PLN02188 110 GSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNF 189 (404)
T ss_pred CCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccE
Confidence 8766789988899999999 999999999997432 1123457899999999999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEEEE
Q 043588 186 HIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNV 265 (397)
Q Consensus 186 ~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~nI 265 (397)
+|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+|+.|..+||++|||.|++.+.+.++||
T Consensus 190 ~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV 269 (404)
T PLN02188 190 KGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGL 269 (404)
T ss_pred EEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEE
Confidence 99999999988889999999999999999999999999999999999999999999999999999999877667889999
Q ss_pred EEEeeEEeCCcceEEEEeecCC-CCceEEceEEEEEEEecCcccEEEeeecCCCCCCCC-CCccceEEEeEEEEeEEEee
Q 043588 266 TVFKTVFTGTTNGFRIKSWARP-SNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCP-GQVSGVKINDITYQDIRGTS 343 (397)
Q Consensus 266 ~i~n~~~~~~~~gi~i~~~~~~-~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~i~nI~f~ni~~~~ 343 (397)
+|+||+|.++.+|++||+|.+. ++|.++||+|+|++|+++.+||.|++.|++... |. .....+.|+||+|+||+++.
T Consensus 270 ~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 270 VVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEEEEEEEEe
Confidence 9999999999999999999753 458999999999999999999999999986432 22 22356789999999999998
Q ss_pred CCCceEEEeecCCCceecEEEEeEEEEeCC--CccceeeecccccccCeecCCCCC
Q 043588 344 ATPIAIKFDCSTKYPCQGIKLQNINLRHLK--QVAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 344 ~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~--~~~~~~c~nv~~~~~~~~~~~~~~ 397 (397)
....++.+.|+++.||+||+|+||++..++ +...+.|.|+++.+.+.+.|.||+
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 766789999999999999999999999874 345799999999999999999996
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.7e-56 Score=427.94 Aligned_cols=322 Identities=38% Similarity=0.679 Sum_probs=277.9
Q ss_pred hccCCCcEEEEcCceEEeeceeeeccCCCcceEEEEccEEEeeccccccCCCcceEEEecccceEEEc-eeeeCCCCccc
Q 043588 60 CTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GALDAKGSSLW 138 (397)
Q Consensus 60 ~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w 138 (397)
|++.++++|+||+|+|+++++.|++.+.+ ++++.++|++.++.....++. ..|+.+.+++|++|.| |+|||+|+.||
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~ 78 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWW 78 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTC
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhh
Confidence 67778889999999999999999865556 899999999988755555554 6789999999999999 99999999999
Q ss_pred ccccC-CCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEec
Q 043588 139 ACKAS-GANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNC 217 (397)
Q Consensus 139 ~~~~~-~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~ 217 (397)
..... ......||+++.|.+|++++|++++++++|.|++++..|+|++|++++|.++.+.+|+|||++.+|+||+|+||
T Consensus 79 ~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~ 158 (326)
T PF00295_consen 79 DGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENC 158 (326)
T ss_dssp SSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESE
T ss_pred ccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEe
Confidence 75432 13446799999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred EEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEE
Q 043588 218 TIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSF 297 (397)
Q Consensus 218 ~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~ 297 (397)
+++++||||+++++..||+|+||+|..+||++|||++.......++||+|+||+|.++.+|++||++++ ++|.|+||+|
T Consensus 159 ~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f 237 (326)
T PF00295_consen 159 FIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITF 237 (326)
T ss_dssp EEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEE
T ss_pred ecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEE
Confidence 999999999999988899999999999999999999765433469999999999999999999999986 8899999999
Q ss_pred EEEEEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEeeCCCceEEEeecCCCceecEEEEeEEEEeCCCccc
Q 043588 298 IDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQ 377 (397)
Q Consensus 298 ~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~~~~~ 377 (397)
+|++|+++.+|+.|.+.|.. ...+...+..+.|+||+|+||+++.....++.+.|.+..||+||+|+||+|+. +..+
T Consensus 238 ~ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~ 314 (326)
T PF00295_consen 238 ENITMENVKYPIFIDQDYRD-GGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKP 314 (326)
T ss_dssp EEEEEEEESEEEEEEEEECT-TEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSE
T ss_pred EEEEecCCceEEEEEecccc-ccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcC
Confidence 99999999999999999876 22233334567899999999999998777999999999999999999999997 3778
Q ss_pred eeeecccccc
Q 043588 378 SSCNNVIGKA 387 (397)
Q Consensus 378 ~~c~nv~~~~ 387 (397)
+.|.|++.+.
T Consensus 315 ~~c~nv~~~~ 324 (326)
T PF00295_consen 315 AQCKNVPSGI 324 (326)
T ss_dssp SEEBSCCTT-
T ss_pred eEEECCCCCC
Confidence 9999998764
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-41 Score=334.83 Aligned_cols=271 Identities=32% Similarity=0.506 Sum_probs=232.1
Q ss_pred CceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeeeccCCCcceEEEEc-c-EEEeecccc
Q 043588 29 TTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRID-G-TLVAPADYR 106 (397)
Q Consensus 29 ~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~-G-~l~~~~~~~ 106 (397)
....++|.+|||++||.+|+++|||+||++ |+.++|++|+||||+|+.++|+|| | +++|+++ | +|+.+.++.
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~a~Gg~V~lPaGtylsg~l~LK----S-~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CASAGGGTVLLPAGTYLSGPLFLK----S-NVTLHLAEGATLLASSNPK 152 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHHHh-hhhhcCceEEECCceeEeeeEEEe----c-ccEEEecCCceeeCCCChh
Confidence 345889999999999999999999999975 688899999999999999999999 8 9999995 7 999999999
Q ss_pred ccCC--------C----------cceE-------------EEecccceE-EEc-eeeeCCC---Cc-cccccc--CCCCC
Q 043588 107 VLGQ--------A----------DNWL-------------SFEGVSGVS-IIG-GALDAKG---SS-LWACKA--SGANC 147 (397)
Q Consensus 107 ~~~~--------~----------~~~i-------------~~~~~~ni~-I~G-G~idg~g---~~-~w~~~~--~~~~~ 147 (397)
+|+. . ..++ .....+|.. |.| ++++|++ .. ||.... .....
T Consensus 153 ~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~ 232 (542)
T COG5434 153 DYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIG 232 (542)
T ss_pred hccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhccc
Confidence 9983 1 1122 222235555 777 8888864 12 665443 11111
Q ss_pred C--CCceeEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCce
Q 043588 148 P--DGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDC 225 (397)
Q Consensus 148 ~--~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~ 225 (397)
. .||..+.+..|.||++++++|.+++.|++++..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.++|||
T Consensus 233 ~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 233 GKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDC 311 (542)
T ss_pred ccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCce
Confidence 2 58999999999999999999999999999999999999999999997654 99999999999999999999999999
Q ss_pred EEeCCC-----------CeeEEEEeeEEecCce-eEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEE
Q 043588 226 IPIGPG-----------TKNLWIERVTCGPGHG-ISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQ 293 (397)
Q Consensus 226 i~i~~~-----------s~nv~i~n~~~~~~~g-i~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ 293 (397)
|+++++ ++|+.|+||++..+|| +.+||+ +.+.++||++|||.|.++.+|++||+..+ ++|.++
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v~ 386 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGVR 386 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cceeEE
Confidence 999985 6899999999999997 888998 57889999999999999999999999987 779999
Q ss_pred ceEEEEEEEecCcccEEE
Q 043588 294 GVSFIDAIMRNVQFPIVI 311 (397)
Q Consensus 294 ni~~~ni~~~~~~~~i~i 311 (397)
||+|+++.+.++..+..|
T Consensus 387 nI~~~~~~~~nv~t~~~i 404 (542)
T COG5434 387 NIVFEDNKMRNVKTKLSI 404 (542)
T ss_pred EEEEecccccCcccceee
Confidence 999999999998644433
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.94 E-value=2.6e-25 Score=212.70 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=181.2
Q ss_pred eEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeeeccCCCcceEEEEc-cEEEeeccccccCC
Q 043588 32 TYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRID-GTLVAPADYRVLGQ 110 (397)
Q Consensus 32 ~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~-G~l~~~~~~~~~~~ 110 (397)
.+++++|||++|+.+|+|+|||+||++| + .++++|.+|||+|+.+++.|+ + +++|.++ |.....-+.
T Consensus 37 ~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----s-pltL~G~~gAt~~vIdG----- 104 (455)
T TIGR03808 37 GRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----S-GAQLIGVRGATRLVFTG----- 104 (455)
T ss_pred CCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----C-CcEEEecCCcEEEEEcC-----
Confidence 5799999999999999999999999865 4 356899999999999999998 6 9999998 432110011
Q ss_pred CcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEecee-------
Q 043588 111 ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCK------- 183 (397)
Q Consensus 111 ~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~------- 183 (397)
...++...++++|+|+|-+|+|+|..| ..++.+|.+..|++++|+++++.++..|++.+..|+
T Consensus 105 ~~~lIiai~A~nVTIsGLtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~ 174 (455)
T TIGR03808 105 GPSLLSSEGADGIGLSGLTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT 174 (455)
T ss_pred CceEEEEecCCCeEEEeeEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce
Confidence 134565667999999999999998754 346778999999999999999999999999999999
Q ss_pred ---------------cEEEEeEEEECCCC--------------------------------CCCCCceeeecceeEEEEe
Q 043588 184 ---------------DVHIEGVTVIAPGN--------------------------------SPNTDGIHVQLSTNVKITN 216 (397)
Q Consensus 184 ---------------nv~i~n~~i~~~~~--------------------------------~~~~DGi~~~~s~nv~I~n 216 (397)
++.|++.+|....| ....+||+++++.+++|++
T Consensus 175 I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~g 254 (455)
T TIGR03808 175 ITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRG 254 (455)
T ss_pred EeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEEC
Confidence 77777777776433 2346788888888888888
Q ss_pred cEEecCC-ceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecC-CCCceEEc
Q 043588 217 CTIKTGD-DCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWAR-PSNGFVQG 294 (397)
Q Consensus 217 ~~i~~~d-D~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~-~~~g~i~n 294 (397)
++|+.++ |+|-+.+ ++|++|+++.|..-.=..+-++ + ..+.-.|+|+.+.+...|+.+..... .+-..+..
T Consensus 255 N~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym--f----s~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~g 327 (455)
T TIGR03808 255 NRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE--F----AFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQG 327 (455)
T ss_pred CEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE--E----eCCCcEEeccEEecCcceEEEEeecCCceEEEEec
Confidence 8888877 8887777 7788888888764321122221 1 11124577788888778888876532 12245666
Q ss_pred eEEEEEEEec
Q 043588 295 VSFIDAIMRN 304 (397)
Q Consensus 295 i~~~ni~~~~ 304 (397)
-.++|++-+.
T Consensus 328 n~irn~~~~~ 337 (455)
T TIGR03808 328 NIIRNLIPKR 337 (455)
T ss_pred ceeeccccCC
Confidence 6777777654
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=4.1e-21 Score=174.70 Aligned_cols=213 Identities=30% Similarity=0.428 Sum_probs=110.1
Q ss_pred eEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeec-eeeeccCCCcceEEEEcc---EEEe-ecccc
Q 043588 32 TYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGS-VAFKGDCKSSDITFRIDG---TLVA-PADYR 106 (397)
Q Consensus 32 ~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~-~~l~~~~~s~~~~l~~~G---~l~~-~~~~~ 106 (397)
.++|+||||+|||++|||+|||+||+++ +..++++||||||+|++.. +.++ + +++|+++| ++.. .....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~~----s-~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLIIP----S-NVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----T-TEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEcC----C-CeEEEccCCCeeEEEecCccc
Confidence 3799999999999999999999999655 7789999999999999886 8887 6 99999985 3333 22222
Q ss_pred ccCCCcceEEEec-ccc--eEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEecee
Q 043588 107 VLGQADNWLSFEG-VSG--VSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCK 183 (397)
Q Consensus 107 ~~~~~~~~i~~~~-~~n--i~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~ 183 (397)
.+........+.. ..+ +.|++-++++.+...- .....+.+..+++++|+++++.+....++.+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~~----------~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~ 144 (225)
T PF12708_consen 75 SFSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDPN----------NNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGT 144 (225)
T ss_dssp TSCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-----------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCE
T ss_pred ccccccceeeeecCCCCceEEEEeeEEEcccccCC----------CCceEEEEEeCCeEEEEeEEEEccCccEEEEEccc
Confidence 2210000111111 111 2244444444432110 01234666666666666666666555555555333
Q ss_pred cEEEEeEEEECCCCCCCCCceeeec-ceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEec--CceeEEeeecccCCcC
Q 043588 184 DVHIEGVTVIAPGNSPNTDGIHVQL-STNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGP--GHGISIGSLAKDLIEE 260 (397)
Q Consensus 184 nv~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~--~~gi~igs~~~~~~~~ 260 (397)
...+.+.... .++.+.. +.++.+.++.+..+++++... .++++++||.+.. ..|+.+...
T Consensus 145 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~n~~~~~~~~~gi~i~~~------- 207 (225)
T PF12708_consen 145 DYRIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGIILG--NNNITISNNTFEGNCGNGINIEGG------- 207 (225)
T ss_dssp ECEEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEECE--EEEEEEECEEEESSSSESEEEEEC-------
T ss_pred cCcEeecccc--------eeeeeccceeEEEECCccccCCCceeEee--cceEEEEeEEECCccceeEEEECC-------
Confidence 3333222211 0222322 234445555555555552211 2455555555544 134444321
Q ss_pred CEEEEEEEeeEEeCCcceE
Q 043588 261 GVQNVTVFKTVFTGTTNGF 279 (397)
Q Consensus 261 ~v~nI~i~n~~~~~~~~gi 279 (397)
.+++++|++|.+...|+
T Consensus 208 --~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 --SNIIISNNTIENCDDGI 224 (225)
T ss_dssp --SEEEEEEEEEESSSEEE
T ss_pred --eEEEEEeEEEECCccCc
Confidence 12555555555544443
No 11
>PLN02793 Probable polygalacturonase
Probab=99.86 E-value=2.4e-19 Score=176.60 Aligned_cols=218 Identities=19% Similarity=0.243 Sum_probs=169.7
Q ss_pred ceEEEEccEEEeeccccccCC------------CcceEEEecccceEEEc-eeeeCCCCcccccccCCCCCCCCceeEEE
Q 043588 90 DITFRIDGTLVAPADYRVLGQ------------ADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGANCPDGATTLRF 156 (397)
Q Consensus 90 ~~~l~~~G~l~~~~~~~~~~~------------~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~ 156 (397)
+++|.+.|+|.... ...|.. ...++.+.+++|++|+| -..+. +.| .+++
T Consensus 144 ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---p~~--------------~i~~ 205 (443)
T PLN02793 144 HLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---QQM--------------HIAF 205 (443)
T ss_pred eEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---CCe--------------EEEE
Confidence 88888888876532 112211 12468899999999999 44432 223 4889
Q ss_pred EccCCeEEEeeEEecCc----ceEEEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCC-
Q 043588 157 TNSNNIRINGLLSLNSQ----MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGP- 230 (397)
Q Consensus 157 ~~~~nv~i~~v~i~~~~----~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~- 230 (397)
.+|+|++|+++++.++. .++|++..|+||+|+|++|.+. .|+|.+. +|+||+|+||.+..++ +|++++
T Consensus 206 ~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~~Gh-GisIGSl 279 (443)
T PLN02793 206 TNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACGPGH-GISIGSL 279 (443)
T ss_pred EccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEeCCc-cEEEecc
Confidence 99999999999998743 4799999999999999999984 4789986 6899999999998775 699987
Q ss_pred -------CCeeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCC---------CCceEE
Q 043588 231 -------GTKNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARP---------SNGFVQ 293 (397)
Q Consensus 231 -------~s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~---------~~g~i~ 293 (397)
+.+||+|+||++.++ .|++|++...+ .+.++||+|+|++|.+..++|.|...+.. ....|+
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~--~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~ 357 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG--SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVE 357 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCC--CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEE
Confidence 268999999999986 69999987432 36799999999999999999999876531 124699
Q ss_pred ceEEEEEEEecCc-ccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEeeCC
Q 043588 294 GVSFIDAIMRNVQ-FPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSAT 345 (397)
Q Consensus 294 ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~~~ 345 (397)
||+|+|++.+... .++.+... +..+++||+|+||+++...
T Consensus 358 nI~~~nI~Gt~~~~~ai~l~cs------------~~~pc~ni~l~nI~l~~~~ 398 (443)
T PLN02793 358 NISFVHIKGTSATEEAIKFACS------------DSSPCEGLYLEDVQLLSST 398 (443)
T ss_pred eEEEEEEEEEEcccccEEEEeC------------CCCCEeeEEEEeeEEEecC
Confidence 9999999988753 46666521 2347999999999988653
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.85 E-value=7.1e-19 Score=171.32 Aligned_cols=220 Identities=18% Similarity=0.190 Sum_probs=169.4
Q ss_pred ceEEEEccEEEeeccccccCC-----------CcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEc
Q 043588 90 DITFRIDGTLVAPADYRVLGQ-----------ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTN 158 (397)
Q Consensus 90 ~~~l~~~G~l~~~~~~~~~~~-----------~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~ 158 (397)
+++|.+.|+|..... ..|.. ...++.+..++|+.|+|-++.. .++| .+++.+
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~n--Sp~w--------------~i~~~~ 185 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN--SKFF--------------HIALVE 185 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEc--CCCe--------------EEEEEc
Confidence 788888888765432 22321 1246888899999999944431 2334 589999
Q ss_pred cCCeEEEeeEEecCc----ceEEEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCC---
Q 043588 159 SNNIRINGLLSLNSQ----MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGP--- 230 (397)
Q Consensus 159 ~~nv~i~~v~i~~~~----~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~--- 230 (397)
|+|++|+++++.++. .++|++..|+||+|+|++|.+. .|+|.+. +++||+|+|+....+ .+|++++
T Consensus 186 ~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~g-hGisiGSlG~ 259 (404)
T PLN02188 186 CRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGPG-HGISVGSLGR 259 (404)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcCC-CcEEeCCCCC
Confidence 999999999998642 3689999999999999999984 4789986 478999999999766 4799987
Q ss_pred -----CCeeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecC---------CCCceEEce
Q 043588 231 -----GTKNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWAR---------PSNGFVQGV 295 (397)
Q Consensus 231 -----~s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~---------~~~g~i~ni 295 (397)
+.+||+|+||++.++ +|++|++.....+.+.++||+|+|++|.+...+|.|...+. .....|+||
T Consensus 260 ~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nI 339 (404)
T PLN02188 260 YPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDI 339 (404)
T ss_pred CCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeE
Confidence 269999999999986 69999986433334679999999999999999999876432 123569999
Q ss_pred EEEEEEEecCc-ccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEeeC
Q 043588 296 SFIDAIMRNVQ-FPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSA 344 (397)
Q Consensus 296 ~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~~ 344 (397)
+|+|++.+... .++.+.. . +..+.+||+|+||+++..
T Consensus 340 t~~nI~gt~~~~~a~~l~c---s---------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 340 YFKNIRGTSSSQVAVLLKC---S---------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEecCceEEEEEE---C---------CCCCEeeEEEEeeEEEec
Confidence 99999998753 4555542 1 234789999999999764
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.84 E-value=2.8e-18 Score=167.83 Aligned_cols=218 Identities=17% Similarity=0.212 Sum_probs=168.6
Q ss_pred ceEEEEccEEEeeccccccCC---CcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEe
Q 043588 90 DITFRIDGTLVAPADYRVLGQ---ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRING 166 (397)
Q Consensus 90 ~~~l~~~G~l~~~~~~~~~~~---~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~ 166 (397)
+++|.+.|+|.... ...|.. ...++.+.+++|+.|+|-++.. .+.| .+++.+|+|++|++
T Consensus 114 ~i~I~G~GtIDGqG-~~wW~~~~~rP~~l~f~~~~nv~I~gitl~N--Sp~w--------------~i~i~~c~nV~i~~ 176 (456)
T PLN03003 114 GLVIEGDGEINGQG-SSWWEHKGSRPTALKFRSCNNLRLSGLTHLD--SPMA--------------HIHISECNYVTISS 176 (456)
T ss_pred ceEEeccceEeCCc-hhhhhcccCCceEEEEEecCCcEEeCeEEec--CCcE--------------EEEEeccccEEEEE
Confidence 88999888876532 222321 1346889999999999944421 2233 48999999999999
Q ss_pred eEEecCc----ceEEEEeceecEEEEeEEEECCCCCCCCCceeeec-ceeEEEEecEEecCCceEEeCCC--------Ce
Q 043588 167 LLSLNSQ----MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQL-STNVKITNCTIKTGDDCIPIGPG--------TK 233 (397)
Q Consensus 167 v~i~~~~----~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~--------s~ 233 (397)
+++.++. .+||++..|+||+|+|+.|.+. .|+|.+.+ |+||+|+||.+..++ +|+++|- .+
T Consensus 177 l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tG-----DDCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATG-----DDCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATVE 250 (456)
T ss_pred EEEeCCCCCCCCCcEeecCcceEEEEecEEecC-----CCeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceEE
Confidence 9998742 3699999999999999999984 47898874 789999999998764 7999872 68
Q ss_pred eEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCC-----------CCceEEceEEEEEE
Q 043588 234 NLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARP-----------SNGFVQGVSFIDAI 301 (397)
Q Consensus 234 nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~-----------~~g~i~ni~~~ni~ 301 (397)
||+|+||++.++ +|++|++...+ .+.++||+|+|++|.+..++|.|...+.. ....|+||+|+|++
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~Gg--~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~ 328 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQGG--SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFI 328 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCCC--CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEE
Confidence 999999999986 69999997332 36799999999999999999998765531 12368999999999
Q ss_pred EecC-cccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEeeC
Q 043588 302 MRNV-QFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSA 344 (397)
Q Consensus 302 ~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~~ 344 (397)
-+.. +.++.+. |+ +..+.+||+|+||.++..
T Consensus 329 GTs~~~~ai~l~---Cs---------~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 329 GTSKSEYGVDFR---CS---------ERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EEeCccceEEEE---eC---------CCCCeeeEEEEEEEEEec
Confidence 7654 3566654 22 234689999999998764
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.84 E-value=2.2e-18 Score=169.06 Aligned_cols=217 Identities=13% Similarity=0.156 Sum_probs=166.9
Q ss_pred ceEEEEc--cEEEeeccccccCC------------CcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEE
Q 043588 90 DITFRID--GTLVAPADYRVLGQ------------ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLR 155 (397)
Q Consensus 90 ~~~l~~~--G~l~~~~~~~~~~~------------~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~ 155 (397)
|++|.+. |+|.... ...|.. ...++.+.+++|++|+|-++.. .+.| .++
T Consensus 157 ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~n--Sp~w--------------~i~ 219 (431)
T PLN02218 157 NLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRN--AQQI--------------QIS 219 (431)
T ss_pred EEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEc--CCCE--------------EEE
Confidence 7888885 7775432 112211 1236889999999999955432 2233 489
Q ss_pred EEccCCeEEEeeEEecC----cceEEEEeceecEEEEeEEEECCCCCCCCCceeeec-ceeEEEEecEEecCCceEEeCC
Q 043588 156 FTNSNNIRINGLLSLNS----QMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQL-STNVKITNCTIKTGDDCIPIGP 230 (397)
Q Consensus 156 ~~~~~nv~i~~v~i~~~----~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~ 230 (397)
+.+|+|++|+++++.++ -.++|++.+|+||+|+|++|.+.+ |.|.+.+ |+||+|+||++..++ +|+++|
T Consensus 220 ~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGD-----DcIaIksgs~nI~I~n~~c~~GH-GisIGS 293 (431)
T PLN02218 220 IEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGD-----DCISIESGSQNVQINDITCGPGH-GISIGS 293 (431)
T ss_pred EEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCC-----ceEEecCCCceEEEEeEEEECCC-CEEECc
Confidence 99999999999999764 246999999999999999999844 7888875 889999999997664 799988
Q ss_pred C--------CeeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCC--------CCceEE
Q 043588 231 G--------TKNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARP--------SNGFVQ 293 (397)
Q Consensus 231 ~--------s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~--------~~g~i~ 293 (397)
. .+||+|+||++.++ .|++|++...+ .+.++||+|+|++|.+..++|.|...+.. ....|+
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg--~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~ 371 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGG--SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVK 371 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCCC--CeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEE
Confidence 2 57999999999886 69999997332 36899999999999999999998765431 234599
Q ss_pred ceEEEEEEEecCc-ccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEee
Q 043588 294 GVSFIDAIMRNVQ-FPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTS 343 (397)
Q Consensus 294 ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~ 343 (397)
||+|+|++.+... .++.+.. . +..+++||+|+||.++.
T Consensus 372 nI~~~NI~gtsa~~~ai~l~c---s---------~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 372 NVVYRNISGTSASDVAITFNC---S---------KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred EEEEEeEEEEecCCcEEEEEE---C---------CCCCEeeEEEEeEEEEC
Confidence 9999999998653 4555542 1 23479999999999975
No 15
>PLN02155 polygalacturonase
Probab=99.83 E-value=3.8e-18 Score=165.51 Aligned_cols=198 Identities=20% Similarity=0.175 Sum_probs=156.7
Q ss_pred ceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCc----ceEEEEeceecEEEE
Q 043588 113 NWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQ----MFHIVINGCKDVHIE 188 (397)
Q Consensus 113 ~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~----~~~i~~~~~~nv~i~ 188 (397)
.++.+.+++|++|+|-++.. .+.| .+++.+|+|++|+++++.++. .++|++..|+||+|+
T Consensus 146 ~~i~~~~~~nv~i~gitl~n--Sp~w--------------~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~ 209 (394)
T PLN02155 146 RSISFNSAKDVIISGVKSMN--SQVS--------------HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFT 209 (394)
T ss_pred cceeEEEeeeEEEECeEEEc--CCCe--------------EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEE
Confidence 36888899999999944421 2233 589999999999999998743 379999999999999
Q ss_pred eEEEECCCCCCCCCceeeec-ceeEEEEecEEecCCceEEeCCC--------CeeEEEEeeEEecC-ceeEEeeecccCC
Q 043588 189 GVTVIAPGNSPNTDGIHVQL-STNVKITNCTIKTGDDCIPIGPG--------TKNLWIERVTCGPG-HGISIGSLAKDLI 258 (397)
Q Consensus 189 n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~--------s~nv~i~n~~~~~~-~gi~igs~~~~~~ 258 (397)
|++|.+. .|+|.+.+ |+||+|+||.+..++ ++++++. .+||+|+||++.++ .|++|++... ..
T Consensus 210 ~~~I~~g-----DDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~ 282 (394)
T PLN02155 210 GSTVQTG-----DDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PS 282 (394)
T ss_pred eeEEecC-----CceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CC
Confidence 9999984 47888875 789999999998764 7999882 49999999999976 6999998421 12
Q ss_pred cCCEEEEEEEeeEEeCCcceEEEEeecCC---------CCceEEceEEEEEEEecC-cccEEEeeecCCCCCCCCCCccc
Q 043588 259 EEGVQNVTVFKTVFTGTTNGFRIKSWARP---------SNGFVQGVSFIDAIMRNV-QFPIVIDQNYCPHNLNCPGQVSG 328 (397)
Q Consensus 259 ~~~v~nI~i~n~~~~~~~~gi~i~~~~~~---------~~g~i~ni~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~ 328 (397)
.+.++||+|+|++|.+...+|.|...+.. ....|+||+|+|++.+.. ..++.+... ..
T Consensus 283 gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~------------~~ 350 (394)
T PLN02155 283 TGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS------------KS 350 (394)
T ss_pred CEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC------------CC
Confidence 46799999999999999999999765421 113699999999999876 345566421 23
Q ss_pred eEEEeEEEEeEEEeeCC
Q 043588 329 VKINDITYQDIRGTSAT 345 (397)
Q Consensus 329 ~~i~nI~f~ni~~~~~~ 345 (397)
.+.+||+|+||+++...
T Consensus 351 ~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 351 SPCTGITLQDIKLTYNK 367 (394)
T ss_pred CCEEEEEEEeeEEEecC
Confidence 37899999999998653
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.83 E-value=2e-18 Score=165.37 Aligned_cols=217 Identities=23% Similarity=0.309 Sum_probs=165.6
Q ss_pred ceEEEEccEEEeeccccccCC----------CcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEcc
Q 043588 90 DITFRIDGTLVAPADYRVLGQ----------ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNS 159 (397)
Q Consensus 90 ~~~l~~~G~l~~~~~~~~~~~----------~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~ 159 (397)
++++.+.|+|..... ..|.. ...++.+.+++|++|+|-++. + .+.| .+++.+|
T Consensus 61 ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~-n-sp~w--------------~~~~~~~ 123 (326)
T PF00295_consen 61 NITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIR-N-SPFW--------------HIHINDC 123 (326)
T ss_dssp EEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEE-S--SSE--------------SEEEESE
T ss_pred EEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEec-C-CCee--------------EEEEEcc
Confidence 666666677765432 11211 135788999999999994443 2 2233 4899999
Q ss_pred CCeEEEeeEEecCcc----eEEEEeceecEEEEeEEEECCCCCCCCCceeeecce-eEEEEecEEecCCceEEeCC---C
Q 043588 160 NNIRINGLLSLNSQM----FHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLST-NVKITNCTIKTGDDCIPIGP---G 231 (397)
Q Consensus 160 ~nv~i~~v~i~~~~~----~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~---~ 231 (397)
+|++|+++++.++.. ++|++..|+|++|+|+.|.+. .|+|.+.+.+ ||+|+||.+..++ ++++++ +
T Consensus 124 ~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~ 197 (326)
T PF00295_consen 124 DNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGGH-GISIGSEGSG 197 (326)
T ss_dssp EEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESSS-EEEEEEESSS
T ss_pred CCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccc-----cCcccccccccceEEEeEEEeccc-cceeeeccCC
Confidence 999999999987643 689999999999999999984 4789998755 9999999998765 588875 2
Q ss_pred -----CeeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCC--------CCceEEceEE
Q 043588 232 -----TKNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARP--------SNGFVQGVSF 297 (397)
Q Consensus 232 -----s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~--------~~g~i~ni~~ 297 (397)
.+||+|+||++.++ +|++|++... ..+.++||+|+|++|.+..+++.|...+.. ....++||+|
T Consensus 198 ~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~--~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~ 275 (326)
T PF00295_consen 198 GSQNDIRNVTFENCTIINTDNGIRIKTWPG--GGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITF 275 (326)
T ss_dssp SE--EEEEEEEEEEEEESESEEEEEEEETT--TSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEE
T ss_pred ccccEEEeEEEEEEEeeccceEEEEEEecc--cceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEE
Confidence 48999999999876 6899998632 346799999999999998899988765331 2357999999
Q ss_pred EEEEEecCc-ccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEee
Q 043588 298 IDAIMRNVQ-FPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTS 343 (397)
Q Consensus 298 ~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~ 343 (397)
+|++..... .++.+... +..+++||+|+||.++.
T Consensus 276 ~nitg~~~~~~~i~i~~~------------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 276 RNITGTSAGSSAISIDCS------------PGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEESTSEEEEEE-B------------TTSSEEEEEEEEEEEES
T ss_pred EeeEEEeccceEEEEEEC------------CcCcEEeEEEEeEEEEc
Confidence 999998776 56666532 22369999999999987
No 17
>PLN03010 polygalacturonase
Probab=99.82 E-value=2e-17 Score=160.91 Aligned_cols=204 Identities=18% Similarity=0.239 Sum_probs=160.0
Q ss_pred eeEEEEccCCeEEEeeEEecC---cce-EEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEec-----C
Q 043588 152 TTLRFTNSNNIRINGLLSLNS---QMF-HIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT-----G 222 (397)
Q Consensus 152 ~~i~~~~~~nv~i~~v~i~~~---~~~-~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-----~ 222 (397)
..+.+.+.+|+.|.|=-..+. ..| .+.+..|+|++|+++++.+++ ..-+++..|++|+|++.++.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp----~~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSP----KNHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCC----ceEEEEeccccEEEEEEEEeCCCCCCC
Confidence 357889999999998655553 234 588999999999999999964 245888899999999999986 3
Q ss_pred CceEEeCCCCeeEEEEeeEEecCc-eeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCC-CCceEEceEEEEE
Q 043588 223 DDCIPIGPGTKNLWIERVTCGPGH-GISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARP-SNGFVQGVSFIDA 300 (397)
Q Consensus 223 dD~i~i~~~s~nv~i~n~~~~~~~-gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~-~~g~i~ni~~~ni 300 (397)
-|||.+.+ ++||+|+||++..++ .++|++. -.++.|+++.+... +|+.|++.... ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEee
Confidence 58999987 899999999999986 4999873 23677888887754 89999987431 2246999999999
Q ss_pred EEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEeeCCCceEEEeec------------CCCceecEEEEeEE
Q 043588 301 IMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCS------------TKYPCQGIKLQNIN 368 (397)
Q Consensus 301 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~~~~~~~~i~~~------------~~~~i~ni~~~ni~ 368 (397)
++.+..++++|+.+.. ..+.++||+|+||++...+ .|+.++.. ....++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG----------GQGYARNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999998743 2458999999999999875 46777521 12368999999999
Q ss_pred EEeCC-Cccceee
Q 043588 369 LRHLK-QVAQSSC 380 (397)
Q Consensus 369 i~~~~-~~~~~~c 380 (397)
-+... ....+.|
T Consensus 346 GT~~~~~~i~l~C 358 (409)
T PLN03010 346 GTTSNENAITLKC 358 (409)
T ss_pred EEeCCCccEEEEe
Confidence 98654 3333444
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.82 E-value=1.8e-17 Score=160.31 Aligned_cols=272 Identities=17% Similarity=0.220 Sum_probs=152.5
Q ss_pred CcEEEEcCceEEeec---eeeeccCCCcc-eEEEEc-cEEEeeccccccCCCcceEEEecccceEEEc-eeeeCCCCccc
Q 043588 65 SATINVPKGRYLLGS---VAFKGDCKSSD-ITFRID-GTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GALDAKGSSLW 138 (397)
Q Consensus 65 g~~v~ip~G~Y~~~~---~~l~~~~~s~~-~~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w 138 (397)
..++||+||+|.++. +.|+ + + .+++++ |.+.. +++......+|+.|.| |++.|....|-
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----s-n~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----S-NTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----T-T--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred cceEEeCCceEEeCCCccEEEC----C-CccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 469999999999875 7776 5 5 478887 65543 3344445689999999 99998776553
Q ss_pred ccccCCC-------CCCC-CceeEE---EEccCCeEEEeeEEecCcceEEEEecee----cEEEEeEEEECCCCCCCCCc
Q 043588 139 ACKASGA-------NCPD-GATTLR---FTNSNNIRINGLLSLNSQMFHIVINGCK----DVHIEGVTVIAPGNSPNTDG 203 (397)
Q Consensus 139 ~~~~~~~-------~~~~-~~~~i~---~~~~~nv~i~~v~i~~~~~~~i~~~~~~----nv~i~n~~i~~~~~~~~~DG 203 (397)
......+ +++. .-+++. ...+++++++|++|.++|.|.+.+.+.+ +..|+|.++...+. .++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccCC
Confidence 2111100 1111 113444 4456699999999999999999999655 48999999998775 79999
Q ss_pred eeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCc-e--eEEeeecccCCcCCEEEEEEEeeEEeCCc----
Q 043588 204 IHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH-G--ISIGSLAKDLIEEGVQNVTVFKTVFTGTT---- 276 (397)
Q Consensus 204 i~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~-g--i~igs~~~~~~~~~v~nI~i~n~~~~~~~---- 276 (397)
+.+. ++-+|+||+++..||+|.+.. .++.++||.++..+ | +.+|. ....++++.|+|+.+.++.
T Consensus 376 i~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW-----~pr~isnv~veni~IIh~r~~~~ 446 (582)
T PF03718_consen 376 IELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGW-----TPRNISNVSVENIDIIHNRWIWH 446 (582)
T ss_dssp -B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--C-----S---EEEEEEEEEEEEE---SSG
T ss_pred cccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeec-----cccccCceEEeeeEEEeeeeecc
Confidence 9996 467789999999999998775 69999999999753 3 66654 2456999999999999863
Q ss_pred -----ceEEEEee-c---CC-----CCceEEceEEEEEEEecCc-ccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEE
Q 043588 277 -----NGFRIKSW-A---RP-----SNGFVQGVSFIDAIMRNVQ-FPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRG 341 (397)
Q Consensus 277 -----~gi~i~~~-~---~~-----~~g~i~ni~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~ 341 (397)
.+|.--+. + .. ..-.|++++|+|+++++.- ..++|..... .....|+|+.|+...+
T Consensus 447 ~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn---------~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 447 NNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN---------YDNLVIKNVHFESWNG 517 (582)
T ss_dssp GCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE---------EEEEEEEEEEECEET-
T ss_pred cCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC---------CcceEEEEeecccccC
Confidence 24432221 1 10 1124799999999999865 4566653211 0223455555553332
Q ss_pred eeCCCceEEEe---ec---CCCceecEEEEeEEEE
Q 043588 342 TSATPIAIKFD---CS---TKYPCQGIKLQNINLR 370 (397)
Q Consensus 342 ~~~~~~~~~i~---~~---~~~~i~ni~~~ni~i~ 370 (397)
..-......+. .. ......+|.|+|.+|.
T Consensus 518 ~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVg 552 (582)
T PF03718_consen 518 LDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVG 552 (582)
T ss_dssp CGCSTT-EEE---CCTTT--B--EEEEEEEEEEET
T ss_pred cccccceeeccccccccccccccccceEEEeEEEC
Confidence 21111111121 11 1234788899998886
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.76 E-value=4e-16 Score=148.32 Aligned_cols=197 Identities=23% Similarity=0.325 Sum_probs=124.9
Q ss_pred HHHHHHHhhccCCCcEEEEcCceEEe-eceeeeccCCCcceEEEEccEEEeeccccccCCCcceEEEecccceEEEceee
Q 043588 52 FAKAWDAACTSTESATINVPKGRYLL-GSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGAL 130 (397)
Q Consensus 52 iq~Ai~~a~~~~~g~~v~ip~G~Y~~-~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~i 130 (397)
||+||++| .+|++|+||||+|.+ +++.+.. + +++|+++|. +.. ++
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~---~-~Iti~G~g~----------------------~~t-----vi 46 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA---D-GVTIRGAGM----------------------DET-----IL 46 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC---C-CeEEEecCC----------------------Ccc-----EE
Confidence 69999876 679999999999986 4566642 3 666665431 000 12
Q ss_pred eCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCC---CCCCCceeee
Q 043588 131 DAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGN---SPNTDGIHVQ 207 (397)
Q Consensus 131 dg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~---~~~~DGi~~~ 207 (397)
++.++. .....+ ...+++++|+++++.++..+++.+..|++++|+++++..... ....+||.+.
T Consensus 47 d~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~ 113 (314)
T TIGR03805 47 DFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV 113 (314)
T ss_pred ecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe
Confidence 222210 001123 334677888888887777777777778888888887763211 1245678887
Q ss_pred cceeEEEEecEEecC-CceEEeCCCCeeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeec
Q 043588 208 LSTNVKITNCTIKTG-DDCIPIGPGTKNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWA 285 (397)
Q Consensus 208 ~s~nv~I~n~~i~~~-dD~i~i~~~s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~ 285 (397)
.|++++|++|+++.. |++|.++. +++++|+||+++.. .|+.+.. ..++.|+++++.+...|+.+...+
T Consensus 114 ~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p 183 (314)
T TIGR03805 114 ESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLP 183 (314)
T ss_pred ccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecC
Confidence 788888888888773 45777765 77888888877654 3666532 245677777777766777775443
Q ss_pred CCCCceEEceEEEEEEEecC
Q 043588 286 RPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 286 ~~~~g~i~ni~~~ni~~~~~ 305 (397)
+.....-+++++++.++.+.
T Consensus 184 ~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 184 GLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CCCcCCccceEEECCEEECC
Confidence 32222345666776666554
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=7.9e-12 Score=124.46 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=127.7
Q ss_pred cceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCC----ceEEeCCCCeeEEEEeeEEecCce-
Q 043588 173 QMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGD----DCIPIGPGTKNLWIERVTCGPGHG- 247 (397)
Q Consensus 173 ~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d----D~i~i~~~s~nv~i~n~~~~~~~g- 247 (397)
+...+.+..|+||++++++|.+++ ..++++..|++++++|.++.+.+ |++.+.+ ++|++|++|+|..++.
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 445788999999999999999954 37899999999999999998854 5999888 9999999999998865
Q ss_pred eEEeeecccC---CcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCC
Q 043588 248 ISIGSLAKDL---IEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPG 324 (397)
Q Consensus 248 i~igs~~~~~---~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 324 (397)
+++++..... .....++|.|+||.|.....++.+.++ .+|.++||++||+.|.+...+++|+....
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 9998863221 123469999999999987667777777 45889999999999999999999997533
Q ss_pred CccceEEEeEEEEeEEEeeC
Q 043588 325 QVSGVKINDITYQDIRGTSA 344 (397)
Q Consensus 325 ~~~~~~i~nI~f~ni~~~~~ 344 (397)
.++.++||+|+++.+...
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 346899999999987665
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.15 E-value=1.7e-08 Score=96.17 Aligned_cols=175 Identities=20% Similarity=0.216 Sum_probs=127.7
Q ss_pred EEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEec-------CcceEEEEeceecEEE
Q 043588 115 LSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLN-------SQMFHIVINGCKDVHI 187 (397)
Q Consensus 115 i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~-------~~~~~i~~~~~~nv~i 187 (397)
+.+. +++|+|+|-++...+ ...|.+..+++++|+++++.. ...+++.+..|++++|
T Consensus 58 i~v~-a~~VtI~~ltI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I 120 (314)
T TIGR03805 58 LLVT-SDDVTLSDLAVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLV 120 (314)
T ss_pred EEEE-eCCeEEEeeEEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEE
Confidence 4443 799999994443221 125888999999999999962 3468999999999999
Q ss_pred EeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEE
Q 043588 188 EGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVT 266 (397)
Q Consensus 188 ~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~ 266 (397)
+++++... ..+||.+..|++++|++|+++....||.+.. +.++.|+++.+... .|+.+-..... .....++++
T Consensus 121 ~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~ 194 (314)
T TIGR03805 121 EDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVR 194 (314)
T ss_pred ECCEEECC----CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceE
Confidence 99999873 3359999999999999999999888999886 88999999999864 57777443111 123467999
Q ss_pred EEeeEEeCCcc------eEEEEeecCCCCceE----EceEEEEEEEecCcc-cEEEee
Q 043588 267 VFKTVFTGTTN------GFRIKSWARPSNGFV----QGVSFIDAIMRNVQF-PIVIDQ 313 (397)
Q Consensus 267 i~n~~~~~~~~------gi~i~~~~~~~~g~i----~ni~~~ni~~~~~~~-~i~i~~ 313 (397)
|+++++.+... |-.+...+. ..|.+ +++.|+|.++.+... ++.+..
T Consensus 195 v~~N~i~~n~~~n~~~~gn~v~~~~~-g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 195 VFDNIIFDNNTPNFAPAGSIVASVPA-GTGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred EECCEEECCCCCCCcccCCceecCCC-CcEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 99999987531 111111111 23433 889999999998874 565543
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.86 E-value=1.1e-07 Score=85.24 Aligned_cols=95 Identities=14% Similarity=0.231 Sum_probs=64.4
Q ss_pred ceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcC
Q 043588 181 GCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEE 260 (397)
Q Consensus 181 ~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~ 260 (397)
+|+|+.++++.+.+. ..+++++||.|+|+++.+.| |++. ++||+|.|+.+.+-. +..
T Consensus 135 ~s~ni~id~l~~~Gn--------Y~Fq~~kNvei~ns~l~sKD---AFWn-~eNVtVyDS~i~GEY-LgW---------- 191 (277)
T PF12541_consen 135 NSENIYIDNLVLDGN--------YSFQYCKNVEIHNSKLDSKD---AFWN-CENVTVYDSVINGEY-LGW---------- 191 (277)
T ss_pred eccceEEeceEEeCC--------EEeeceeeEEEEccEEeccc---cccc-CCceEEEcceEeeeE-EEE----------
Confidence 455555555555542 34567899999999998876 3555 889999998875310 211
Q ss_pred CEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccE
Q 043588 261 GVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPI 309 (397)
Q Consensus 261 ~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i 309 (397)
..+|+++.||++.+. .| --+++|++.+|++|.+...++
T Consensus 192 ~SkNltliNC~I~g~-Qp----------LCY~~~L~l~nC~~~~tdlaF 229 (277)
T PF12541_consen 192 NSKNLTLINCTIEGT-QP----------LCYCDNLVLENCTMIDTDLAF 229 (277)
T ss_pred EcCCeEEEEeEEecc-Cc----------cEeecceEEeCcEeecceeee
Confidence 246899999999876 23 345678888888888765443
No 23
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.83 E-value=6.2e-07 Score=88.00 Aligned_cols=244 Identities=14% Similarity=0.158 Sum_probs=131.3
Q ss_pred CCCcEEEEcCceEEeeceeeeccCCCcceEEEEccEEEeeccc------cccCCC-------c---ceE---EEecccce
Q 043588 63 TESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADY------RVLGQA-------D---NWL---SFEGVSGV 123 (397)
Q Consensus 63 ~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~------~~~~~~-------~---~~i---~~~~~~ni 123 (397)
....+|||.||.|.-|++.+... .+ ++.+.+.|+|....-. ..|... + .++ ...+.++.
T Consensus 254 sn~~~VYlApGAyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~ 331 (582)
T PF03718_consen 254 SNTKWVYLAPGAYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTL 331 (582)
T ss_dssp TT--EEEE-TTEEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEE
T ss_pred CCccEEEEcCCcEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceE
Confidence 35679999999999999876522 25 8888899998764221 122200 0 112 23456778
Q ss_pred EEEceeeeCCCCcccccccCCCCCCCCceeEEEEccC----CeEEEeeEEecCcce---EEEEeceecEEEEeEEEECCC
Q 043588 124 SIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSN----NIRINGLLSLNSQMF---HIVINGCKDVHIEGVTVIAPG 196 (397)
Q Consensus 124 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~----nv~i~~v~i~~~~~~---~i~~~~~~nv~i~n~~i~~~~ 196 (397)
.+.|-+|.. .++| .+.+.+.+ +..|++..+..+-.| |+.+. .+.+|+||.++.
T Consensus 332 ~~~GiTI~~--pP~~--------------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly--~nS~i~dcF~h~-- 391 (582)
T PF03718_consen 332 TCEGITIND--PPFH--------------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY--PNSTIRDCFIHV-- 391 (582)
T ss_dssp EEES-EEE----SS---------------SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEE--
T ss_pred EEEeeEecC--CCcc--------------eEEecCCccccccceeeceeeeeeEEeccCCcccc--CCCeeeeeEEEe--
Confidence 888855532 3333 25666544 478999998876554 55554 788899999997
Q ss_pred CCCCCCceeeecceeEEEEecEEecC--CceEEeCC---CCeeEEEEeeEEec----------CceeEEeeecc------
Q 043588 197 NSPNTDGIHVQLSTNVKITNCTIKTG--DDCIPIGP---GTKNLWIERVTCGP----------GHGISIGSLAK------ 255 (397)
Q Consensus 197 ~~~~~DGi~~~~s~nv~I~n~~i~~~--dD~i~i~~---~s~nv~i~n~~~~~----------~~gi~igs~~~------ 255 (397)
+.|+|.+.. +++.|+||++... +-.+-++- ..+||.|+|+.+-. ..+|-.-+...
T Consensus 392 ---nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~ 467 (582)
T PF03718_consen 392 ---NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMAST 467 (582)
T ss_dssp ---SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS
T ss_pred ---cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCC
Confidence 668888876 6999999999873 23333332 26799999997621 12332222111
Q ss_pred -cCC-cCCEEEEEEEeeEEeCCcc-eEEEEeecCCCCceEEceEEEEEEEecCc-c----c-EEEeeecCCCCCCCCCCc
Q 043588 256 -DLI-EEGVQNVTVFKTVFTGTTN-GFRIKSWARPSNGFVQGVSFIDAIMRNVQ-F----P-IVIDQNYCPHNLNCPGQV 326 (397)
Q Consensus 256 -~~~-~~~v~nI~i~n~~~~~~~~-gi~i~~~~~~~~g~i~ni~~~ni~~~~~~-~----~-i~i~~~~~~~~~~~~~~~ 326 (397)
..+ ...+++++|+|+++++... .++|.. -....|+.++|+.++.-. . . -.++..+... +.
T Consensus 468 ~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p-----lqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~-----~~- 536 (582)
T PF03718_consen 468 KTADPSTTIRNMTFSNVRCEGMCPCLFRIYP-----LQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMA-----NN- 536 (582)
T ss_dssp --BEEEEEEEEEEEEEEEEECCE-ECEEE-------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTT-----T--
T ss_pred CCCCcccceeeEEEEeEEEecccceeEEEee-----cCCCcceEEEEeecccccCcccccceeecccccccc-----cc-
Confidence 011 1236899999999999654 456764 345677888888887332 1 1 1233222211 11
Q ss_pred cceEEEeEEEEeEEEee
Q 043588 327 SGVKINDITYQDIRGTS 343 (397)
Q Consensus 327 ~~~~i~nI~f~ni~~~~ 343 (397)
......+|.|+|.++.+
T Consensus 537 ~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 537 KQNDTMGIIIENWTVGG 553 (582)
T ss_dssp -B--EEEEEEEEEEETT
T ss_pred ccccccceEEEeEEECC
Confidence 23457888888888654
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.77 E-value=4e-07 Score=88.40 Aligned_cols=145 Identities=19% Similarity=0.129 Sum_probs=102.5
Q ss_pred eEEEEccCCeEEEeeEEecCc------ceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEec-CCce
Q 043588 153 TLRFTNSNNIRINGLLSLNSQ------MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT-GDDC 225 (397)
Q Consensus 153 ~i~~~~~~nv~i~~v~i~~~~------~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~ 225 (397)
++.-...++|+|+|++|.++. ..+|.+..|++++|++++|.++ ...||.++.|+ ..|.++.+.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gs----g~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGS----GGNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcC----CcceEEEEcCc-ceEecceEeccccce
Confidence 466677999999999998865 3478899999999999999983 23689999887 7777777765 5666
Q ss_pred EEeCCCCeeEEEEeeEEecC--ceeEEeee------------------------cccCCc---CCEEEEEEEeeEEeCCc
Q 043588 226 IPIGPGTKNLWIERVTCGPG--HGISIGSL------------------------AKDLIE---EGVQNVTVFKTVFTGTT 276 (397)
Q Consensus 226 i~i~~~s~nv~i~n~~~~~~--~gi~igs~------------------------~~~~~~---~~v~nI~i~n~~~~~~~ 276 (397)
|.++. +++++|+++++... .||.|... ++++.. ....+++|+++++.+..
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 77666 78888888888764 24555422 111110 12356788888888877
Q ss_pred -ceEEEEeecCCCCceEEceEEEEEEEecCcc-cEEE
Q 043588 277 -NGFRIKSWARPSNGFVQGVSFIDAIMRNVQF-PIVI 311 (397)
Q Consensus 277 -~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~-~i~i 311 (397)
.|+++.+. +|+.|++.++++.++ +++.
T Consensus 262 ~dgI~~nss--------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 262 YSAVRGNSA--------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred cceEEEEcc--------cCcEEECcEeeeeeeeEEEE
Confidence 78877653 346677777776666 6554
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.75 E-value=1.7e-07 Score=79.69 Aligned_cols=140 Identities=24% Similarity=0.277 Sum_probs=99.3
Q ss_pred eEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCC
Q 043588 153 TLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGT 232 (397)
Q Consensus 153 ~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s 232 (397)
.|.+....+++|+++++.+....++.+..+..++|++++|.. ...|+.+....++.+++|.+.....++.+. ++
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 367788889999999999999999999999999999999997 456899998899999999999877777777 58
Q ss_pred eeEEEEeeEEecC--ceeEEeeecccCCcCCEEEEEEEeeEEeCCc-ceEEEEeecCCCCceEEceEEEEEEEecCc-cc
Q 043588 233 KNLWIERVTCGPG--HGISIGSLAKDLIEEGVQNVTVFKTVFTGTT-NGFRIKSWARPSNGFVQGVSFIDAIMRNVQ-FP 308 (397)
Q Consensus 233 ~nv~i~n~~~~~~--~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~-~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~-~~ 308 (397)
..++|++|.+... .|+.+.. ...+++|++|+|.+.. .|+.+.... -.+++++++++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 8999999999875 3677632 1356899999999976 788776532 235788888887765 56
Q ss_pred EEEe
Q 043588 309 IVID 312 (397)
Q Consensus 309 i~i~ 312 (397)
+.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 6553
No 26
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=9.3e-07 Score=80.69 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=66.3
Q ss_pred eEEEEeceecEEEEeEEEECCCC-CCCCCceee-ecceeEEEEecEEec---------CCceEEeCCCCeeEEEEeeEEe
Q 043588 175 FHIVINGCKDVHIEGVTVIAPGN-SPNTDGIHV-QLSTNVKITNCTIKT---------GDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 175 ~~i~~~~~~nv~i~n~~i~~~~~-~~~~DGi~~-~~s~nv~I~n~~i~~---------~dD~i~i~~~s~nv~i~n~~~~ 243 (397)
|++.+...+||.|+|++|+.... -++-|+|.+ ..++|++|++|+|.. +|..+.++.++..|+|++|+|.
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fh 196 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFH 196 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeee
Confidence 45555556666666666665321 123477888 567888888888875 3566677777888888888887
Q ss_pred cCc-eeEEeeecccCCcCCEEEEEEEeeEEeCC
Q 043588 244 PGH-GISIGSLAKDLIEEGVQNVTVFKTVFTGT 275 (397)
Q Consensus 244 ~~~-gi~igs~~~~~~~~~v~nI~i~n~~~~~~ 275 (397)
..+ ++-+|+.-.......-.+|++++|.|.+.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 754 45566542211123456788888888874
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.62 E-value=6.6e-07 Score=80.34 Aligned_cols=136 Identities=19% Similarity=0.256 Sum_probs=90.6
Q ss_pred ecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCC
Q 043588 118 EGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 118 ~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~ 197 (397)
..+++|++..-.+.-..+..|....-.-.......--.+.+++|+.++++.+..- ..++.++||.|.|.++.+-+
T Consensus 95 R~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 95 RECSNITLENVDIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hcccCcEEEeeEeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEeccc-
Confidence 3467777777555333445554321000000001113445667777777776433 46789999999999999742
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEEEEEEEeeEEeCCcc
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTN 277 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~ 277 (397)
.++.|+||+|.|+++..-- ++-.++|+++.||++.+.+|+. +++|++++||+|.+++.
T Consensus 170 -------AFWn~eNVtVyDS~i~GEY----LgW~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdl 227 (277)
T PF12541_consen 170 -------AFWNCENVTVYDSVINGEY----LGWNSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDL 227 (277)
T ss_pred -------ccccCCceEEEcceEeeeE----EEEEcCCeEEEEeEEeccCccE-----------eecceEEeCcEeeccee
Confidence 4678999999999997421 2223799999999998777753 57899999999998866
Q ss_pred eEE
Q 043588 278 GFR 280 (397)
Q Consensus 278 gi~ 280 (397)
++.
T Consensus 228 aFE 230 (277)
T PF12541_consen 228 AFE 230 (277)
T ss_pred eee
Confidence 553
No 28
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.61 E-value=3.3e-06 Score=76.57 Aligned_cols=224 Identities=20% Similarity=0.321 Sum_probs=125.9
Q ss_pred CceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEE--ee-ceeeeccCCCcceEEEEccEEEeeccc
Q 043588 29 TTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYL--LG-SVAFKGDCKSSDITFRIDGTLVAPADY 105 (397)
Q Consensus 29 ~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~--~~-~~~l~~~~~s~~~~l~~~G~l~~~~~~ 105 (397)
...++++.||.. .|=-++|.+|+.. +.||.+|+|--- ++ .+.++ . .-||.+.|.|.....
T Consensus 31 ~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip----~-gktl~v~g~l~gngr- 93 (464)
T PRK10123 31 ARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP----P-GKTLHILGSLRGNGR- 93 (464)
T ss_pred CCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEeC----C-CCeEEEEEEeecCCc-
Confidence 345899999985 3566889999954 589999999542 33 46665 3 678888887765322
Q ss_pred cccCCCcceEEEecccceEEEc---eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecC-cceEEEEe-
Q 043588 106 RVLGQADNWLSFEGVSGVSIIG---GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNS-QMFHIVIN- 180 (397)
Q Consensus 106 ~~~~~~~~~i~~~~~~ni~I~G---G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~-~~~~i~~~- 180 (397)
+.++.-++++ +.| |.+. ...+.++ .++..|+++.+..- |...|.+-
T Consensus 94 ------grfvlqdg~q---v~ge~~g~~h-------------------nitldvr-gsdc~ikgiamsgfgpvtqiyigg 144 (464)
T PRK10123 94 ------GRFVLQDGSQ---VTGEEGGSMH-------------------NITLDVR-GSDCTIKGLAMSGFGPVTQIYIGG 144 (464)
T ss_pred ------eeEEEecCCE---eecCCCceee-------------------eEEEeec-cCceEEeeeeecccCceeEEEEcC
Confidence 2233333322 322 2211 1112222 45677777776542 23334443
Q ss_pred ----ceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEec-CCceEEeCC--CCeeEEEEee-----EEecC---
Q 043588 181 ----GCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT-GDDCIPIGP--GTKNLWIERV-----TCGPG--- 245 (397)
Q Consensus 181 ----~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~--~s~nv~i~n~-----~~~~~--- 245 (397)
--+|++|+++++...-++--..|++-. -..+.|.||.|.. ..|+|...- .-++++|++- .|.++
T Consensus 145 k~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngkin 223 (464)
T PRK10123 145 KNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKIN 223 (464)
T ss_pred CCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecccceeeehheheeecccCCccc
Confidence 236777888877753222223344322 3567888888876 566765443 2356666553 34443
Q ss_pred ceeEEeeeccc-----CCcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEE
Q 043588 246 HGISIGSLAKD-----LIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIM 302 (397)
Q Consensus 246 ~gi~igs~~~~-----~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~ 302 (397)
+|+.||-.|.. .....++|..+.|++-.+...=+.+.. + ..=.|+||.-+|++-
T Consensus 224 wgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--g-khfvirnvkaknitp 282 (464)
T PRK10123 224 WGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--G-KHFVIRNIKAKNITP 282 (464)
T ss_pred ceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC--C-cEEEEEeeeccccCC
Confidence 67777665433 233457788888877776654444422 1 112355666665553
No 29
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.58 E-value=2.3e-05 Score=72.75 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=119.6
Q ss_pred CCCcEEEEcCceEEeeceeeeccCCCcceEEEEc-cEEEeeccccccCCCcceEEEecccceEEEceeeeCCCCcccccc
Q 043588 63 TESATINVPKGRYLLGSVAFKGDCKSSDITFRID-GTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACK 141 (397)
Q Consensus 63 ~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~ 141 (397)
.+|+.+-+. |+|. +.+.+. . .++|+.+ |........ +..+... +.++.++|-++.+.|.....
T Consensus 32 ~pgd~~~i~-g~~~-g~~vIn----r-~l~l~ge~ga~l~g~g~------G~~vtv~-aP~~~v~Gl~vr~sg~~lp~-- 95 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVIN----R-ALTLRGENGAVLDGGGK------GSYVTVA-APDVIVEGLTVRGSGRSLPA-- 95 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEc----c-ceeeccccccEEecCCc------ccEEEEe-CCCceeeeEEEecCCCCccc--
Confidence 467777777 7764 223332 1 4666665 322221111 3456665 78899999777666653321
Q ss_pred cCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCC---CCCCCceeeecceeEEEEecE
Q 043588 142 ASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGN---SPNTDGIHVQLSTNVKITNCT 218 (397)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~---~~~~DGi~~~~s~nv~I~n~~ 218 (397)
-....+.-...+.-.|+...+... .+++.+..+.++.|+..+|....+ .....||++.++++..|..+.
T Consensus 96 -------m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~nd 167 (408)
T COG3420 96 -------MDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGND 167 (408)
T ss_pred -------ccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCc
Confidence 112233444556666776666554 478999999999999999997554 235789999999999999999
Q ss_pred EecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEE
Q 043588 219 IKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIK 282 (397)
Q Consensus 219 i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~ 282 (397)
+.-+.|||-... +++-.|+++.+.. ++++.+- .+-.+..++++...++.-|+.+.
T Consensus 168 isy~rDgIy~~~-S~~~~~~gnr~~~---~RygvHy-----M~t~~s~i~dn~s~~N~vG~ALM 222 (408)
T COG3420 168 ISYGRDGIYSDT-SQHNVFKGNRFRD---LRYGVHY-----MYTNDSRISDNSSRDNRVGYALM 222 (408)
T ss_pred cccccceEEEcc-cccceecccchhh---eeeeEEE-----EeccCcEeecccccCCcceEEEE
Confidence 999999998887 7777788777654 2333321 12234556666666655555543
No 30
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.55 E-value=1.7e-05 Score=77.16 Aligned_cols=202 Identities=18% Similarity=0.193 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeeeccC-CCcceEEEEc--c-EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDC-KSSDITFRID--G-TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~-~s~~~~l~~~--G-~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
+.++||+||++| .+|++|+++.|+|.-..+.+++.- ++..++|..+ | ++... ...+.+. .+.+
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G---------~s~l~i~-G~yl 69 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFKGSGTAAKPITLRAENPGKVVITG---------ESNLRIS-GSYL 69 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-S--BTTB-EEEEESSTTSEEEEE---------S-EEEE--SSSE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEEecccCCCCEEEEecCCCeEEEec---------ceeEEEE-eeeE
Confidence 568999999877 789999999999974344443210 0114666665 3 22211 1123333 3556
Q ss_pred EEEceee-eCCCC-cccccccCCCCCCCCceeEEEEccCCeEEEeeEEecC--c----ceEEE---EeceecEEEEeEEE
Q 043588 124 SIIGGAL-DAKGS-SLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNS--Q----MFHIV---INGCKDVHIEGVTV 192 (397)
Q Consensus 124 ~I~GG~i-dg~g~-~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~--~----~~~i~---~~~~~nv~i~n~~i 192 (397)
+|.|-.+ +|... .-|- ..|... .-..+.+.++.++.|.+- + ...+. ....++-+|+++.|
T Consensus 70 ~v~GL~F~ng~~~~~~vi--------~fr~~~-~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F 140 (425)
T PF14592_consen 70 VVSGLKFKNGYTPTGAVI--------SFRNGG-DASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYF 140 (425)
T ss_dssp EEES-EEEEE---TTT----------TTS--S-EEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EE
T ss_pred EEeCeEEecCCCCCCceE--------EeecCC-CcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEe
Confidence 6666333 22211 0000 001100 112356666666666531 1 11222 23566777777777
Q ss_pred ECCCCCCCCCcee--ee----cceeEEEEecEEec-------CCceEEeCCC-----CeeEEEEeeEEecCce----eEE
Q 043588 193 IAPGNSPNTDGIH--VQ----LSTNVKITNCTIKT-------GDDCIPIGPG-----TKNLWIERVTCGPGHG----ISI 250 (397)
Q Consensus 193 ~~~~~~~~~DGi~--~~----~s~nv~I~n~~i~~-------~dD~i~i~~~-----s~nv~i~n~~~~~~~g----i~i 250 (397)
.+.......=.+. +. ...+-+|++++|.. +...|-++.. ..+.+|+++.|..++| |++
T Consensus 141 ~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISv 220 (425)
T PF14592_consen 141 QGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISV 220 (425)
T ss_dssp E---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEE
T ss_pred eccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhhcCCceeEEEe
Confidence 7632111111111 11 12244677777751 2334444321 3567777777766554 444
Q ss_pred eeecccCCcCCEEEEEEEeeEEeCCcceEEE
Q 043588 251 GSLAKDLIEEGVQNVTVFKTVFTGTTNGFRI 281 (397)
Q Consensus 251 gs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i 281 (397)
+|. +-+|++++|..+..++.+
T Consensus 221 KS~----------~N~ir~Ntf~es~G~ltl 241 (425)
T PF14592_consen 221 KSS----------DNTIRNNTFRESQGSLTL 241 (425)
T ss_dssp ESB----------T-EEES-EEES-SSEEEE
T ss_pred ecC----------CceEeccEEEeccceEEE
Confidence 442 234556666655444444
No 31
>PLN02480 Probable pectinesterase
Probab=98.55 E-value=1.7e-05 Score=75.91 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=101.2
Q ss_pred cchHHHHHHHHHHhhccCCCc----EEEEcCceEEeeceeeeccCCCcceEEEEccEEEeeccccccCCCcceEEEeccc
Q 043588 46 TDSTQAFAKAWDAACTSTESA----TINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVS 121 (397)
Q Consensus 46 tddt~aiq~Ai~~a~~~~~g~----~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ 121 (397)
..|-..||+||+++ +.+. +|+|.+|+|. ..+.+... |. +++|.++|. +
T Consensus 57 ~g~f~TIQ~AIdaa---p~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp-~ItL~G~g~----------------------~ 108 (343)
T PLN02480 57 KGDFTSVQSAIDAV---PVGNSEWIIVHLRKGVYR-EKVHIPEN-KP-FIFMRGNGK----------------------G 108 (343)
T ss_pred CCCcccHHHHHhhC---ccCCCceEEEEEcCcEEE-EEEEECCC-Cc-eEEEEecCC----------------------C
Confidence 35688899999876 2233 4889999998 44555311 13 677776641 0
Q ss_pred ceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCc---------ceEEEE-eceecEEEEeEE
Q 043588 122 GVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQ---------MFHIVI-NGCKDVHIEGVT 191 (397)
Q Consensus 122 ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~---------~~~i~~-~~~~nv~i~n~~ 191 (397)
...|.+ +... . . ......+ ....++++++|++|.|.. ..++.+ ..++.+.++||+
T Consensus 109 ~TvI~~-----~~~~------~-~--~~~saTv-tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~ 173 (343)
T PLN02480 109 RTSIVW-----SQSS------S-D--NAASATF-TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCA 173 (343)
T ss_pred CeEEEc-----cccc------c-C--CCCceEE-EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeE
Confidence 111111 0000 0 0 0011123 334678888888888762 133433 356777777777
Q ss_pred EECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-------ceeEEeeecccCCcCCEEE
Q 043588 192 VIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-------HGISIGSLAKDLIEEGVQN 264 (397)
Q Consensus 192 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-------~gi~igs~~~~~~~~~v~n 264 (397)
|.... |-+... ..+-..+||.|...=|-| + |.....++||++..- .|. |-..+. . ...-..
T Consensus 174 f~G~Q-----DTLy~~-~gR~yf~~C~IeG~VDFI-F--G~g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r-~-~~~~~G 241 (343)
T PLN02480 174 FYSTH-----NTLFDY-KGRHYYHSCYIQGSIDFI-F--GRGRSIFHNCEIFVIADRRVKIYGS-ITAHNR-E-SEDNSG 241 (343)
T ss_pred Eeccc-----ceeEeC-CCCEEEEeCEEEeeeeEE-c--cceeEEEEccEEEEecCCCCCCceE-EEcCCC-C-CCCCCE
Confidence 77632 323222 245666777776543433 2 234677777776532 121 111111 1 122345
Q ss_pred EEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEec
Q 043588 265 VTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 265 I~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
..|.||++.+.. ...++ +..+....+.|.|..|.+
T Consensus 242 fvF~~C~i~g~g-~~yLG----RPW~~ya~vVf~~t~l~~ 276 (343)
T PLN02480 242 FVFIKGKVYGIG-EVYLG----RAKGAYSRVIFAKTYLSK 276 (343)
T ss_pred EEEECCEEcccC-ceeee----cCCCCcceEEEEecccCC
Confidence 677777776632 22232 122334556666666654
No 32
>smart00656 Amb_all Amb_all domain.
Probab=98.53 E-value=6.5e-06 Score=72.75 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=95.2
Q ss_pred eEEEEeceecEEEEeEEEECCCC--CCCCCceeeecceeEEEEecEEecC----------CceEEeCCCCeeEEEEeeEE
Q 043588 175 FHIVINGCKDVHIEGVTVIAPGN--SPNTDGIHVQLSTNVKITNCTIKTG----------DDCIPIGPGTKNLWIERVTC 242 (397)
Q Consensus 175 ~~i~~~~~~nv~i~n~~i~~~~~--~~~~DGi~~~~s~nv~I~n~~i~~~----------dD~i~i~~~s~nv~i~n~~~ 242 (397)
.++.+..++||.|+|++|+.... ....|+|.+.++++|+|++|+|..+ |..+.++.++.++++++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 45666668899999999997543 2367999999999999999999986 55667788899999999999
Q ss_pred ecCc-eeEEeeecccCCcCCEEEEEEEeeEEeCCc-ceEEEEeecCCCCceEEceEEEEEEEecCc-ccEEEeeecCCCC
Q 043588 243 GPGH-GISIGSLAKDLIEEGVQNVTVFKTVFTGTT-NGFRIKSWARPSNGFVQGVSFIDAIMRNVQ-FPIVIDQNYCPHN 319 (397)
Q Consensus 243 ~~~~-gi~igs~~~~~~~~~v~nI~i~n~~~~~~~-~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~-~~i~i~~~~~~~~ 319 (397)
...+ +.-+|+..... .....+|++.++.+.+.. +.-++ +.| .+.+-|..+.+.. +++....
T Consensus 112 ~~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~~~R~P~~------r~g---~~hv~NN~~~n~~~~~~~~~~------ 175 (190)
T smart00656 112 HNHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNLRQRAPRV------RFG---YVHVYNNYYTGWTSYAIGGRM------ 175 (190)
T ss_pred ecCCEEEEEccCCCcc-ccccceEEEECcEEcCcccCCCcc------cCC---EEEEEeeEEeCcccEeEecCC------
Confidence 7654 56676632111 122458999999998742 22222 122 3566666666544 3333221
Q ss_pred CCCCCCccceEEEeEEEEeE
Q 043588 320 LNCPGQVSGVKINDITYQDI 339 (397)
Q Consensus 320 ~~~~~~~~~~~i~nI~f~ni 339 (397)
.....+++-.|++.
T Consensus 176 ------~~~v~~E~N~F~~~ 189 (190)
T smart00656 176 ------GATILSEGNYFEAP 189 (190)
T ss_pred ------CcEEEEECeEEECC
Confidence 13345666666653
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.52 E-value=5.6e-06 Score=75.94 Aligned_cols=113 Identities=26% Similarity=0.224 Sum_probs=93.0
Q ss_pred eEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCC
Q 043588 153 TLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGT 232 (397)
Q Consensus 153 ~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s 232 (397)
.+.+..+.+++|++.++.+. ..++++..+.+++|+++.+.. +..||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 46888899999999999887 789999999999999999997 3489999988877999999998777888876 6
Q ss_pred eeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCC-cceEEE
Q 043588 233 KNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGT-TNGFRI 281 (397)
Q Consensus 233 ~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~-~~gi~i 281 (397)
.+.+|+++++... .||.+... .+.+|++++|.+. ..|+.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 7788999998743 57777432 5778888999887 778874
No 34
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.52 E-value=1.4e-06 Score=73.95 Aligned_cols=117 Identities=28% Similarity=0.380 Sum_probs=83.8
Q ss_pred EEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCc-eeEEeeec
Q 043588 176 HIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH-GISIGSLA 254 (397)
Q Consensus 176 ~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~-gi~igs~~ 254 (397)
+|.+....+++|++++|.. ...+||.+..+..++|+||+|..+..++.+.. ..++++++|++.... ++.+
T Consensus 2 Gi~i~~~~~~~i~~~~i~~----~~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~---- 72 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISN----NGGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYV---- 72 (158)
T ss_dssp CEEETTCEC-EEESEEEES----SSSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEEC----
T ss_pred EEEEECCcCeEEeeeEEEe----CCCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEE----
Confidence 5778888999999999998 36689999998899999999999878888887 589999999998765 4443
Q ss_pred ccCCcCCEEEEEEEeeEEeCCcc-eEEEEeecCCCCceEEceEEEEEEEecCc-ccEEEee
Q 043588 255 KDLIEEGVQNVTVFKTVFTGTTN-GFRIKSWARPSNGFVQGVSFIDAIMRNVQ-FPIVIDQ 313 (397)
Q Consensus 255 ~~~~~~~v~nI~i~n~~~~~~~~-gi~i~~~~~~~~g~i~ni~~~ni~~~~~~-~~i~i~~ 313 (397)
....++++++|++.+... |+.+.. .-.+++++++++.+.. .++.+..
T Consensus 73 -----~~~~~~~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 73 -----SGSSNITIENNRIENNGDYGIYISN-------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp -----CS-CS-EEES-EEECSSS-SCE-TC-------EECS-EEES-EEECCTTSSCEEEE
T ss_pred -----EecCCceecCcEEEcCCCccEEEec-------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 244578999999998755 777742 2345899999998877 6777764
No 35
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.50 E-value=1.1e-05 Score=73.42 Aligned_cols=169 Identities=21% Similarity=0.256 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEcCceEEee-----ceeeeccCCCcceEEEEccEEEeeccccccCCCcceEEEecccc
Q 043588 48 STQAFAKAWDAACTSTESATINVPKGRYLLG-----SVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~-----~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
--+-|++|++.| .+|.+|+|.||+|... ++.++ + .++|.++..-+. ...
T Consensus 14 P~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~----~-gVtl~G~~~~kG------------------~~~ 67 (246)
T PF07602_consen 14 PFKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK----P-GVTLIGNESNKG------------------QID 67 (246)
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEec----C-CeEEeecccCCC------------------cce
Confidence 347899999876 6789999999999754 35565 5 788866532111 012
Q ss_pred eEEEc---e-eeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecC---cceEEEEeceecEEEEeEEEECC
Q 043588 123 VSIIG---G-ALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNS---QMFHIVINGCKDVHIEGVTVIAP 195 (397)
Q Consensus 123 i~I~G---G-~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~---~~~~i~~~~~~nv~i~n~~i~~~ 195 (397)
+.+.| + +++|.+... . ...+.+....+.+|+++++.++ ...++.+..+ +.+|+|++|.+.
T Consensus 68 il~~g~~~~~~I~g~~~~~----------~--~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~ 134 (246)
T PF07602_consen 68 ILITGGGTGPTISGGGPDL----------S--GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN 134 (246)
T ss_pred EEecCCceEEeEeccCccc----------c--ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC
Confidence 22222 1 233332210 0 1235566677788888888776 3345666555 677777777662
Q ss_pred CCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEec-CceeEEeeecccCCcCCEEEEEEEeeEEeC
Q 043588 196 GNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGP-GHGISIGSLAKDLIEEGVQNVTVFKTVFTG 274 (397)
Q Consensus 196 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~-~~gi~igs~~~~~~~~~v~nI~i~n~~~~~ 274 (397)
..+||.+.... .+....++.|+++.+.. ..|+++-.. ...++ -.|+|+.+++
T Consensus 135 ----~~~GI~v~g~~-----------------~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~~~-n~I~NN~I~~ 187 (246)
T PF07602_consen 135 ----GREGIFVTGTS-----------------ANPGINGNVISGNSIYFNKTGISISDN-----AAPVE-NKIENNIIEN 187 (246)
T ss_pred ----ccccEEEEeee-----------------cCCcccceEeecceEEecCcCeEEEcc-----cCCcc-ceeeccEEEe
Confidence 33554442211 11234556677766664 357776432 12232 3568888887
Q ss_pred CcceEEEE
Q 043588 275 TTNGFRIK 282 (397)
Q Consensus 275 ~~~gi~i~ 282 (397)
...|+.+.
T Consensus 188 N~~Gi~~~ 195 (246)
T PF07602_consen 188 NNIGIVAI 195 (246)
T ss_pred CCcCeEee
Confidence 76787754
No 36
>PLN02773 pectinesterase
Probab=98.41 E-value=0.00013 Score=69.04 Aligned_cols=47 Identities=23% Similarity=0.091 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
|-..||+||+++.... .--+|+|.+|+|.-. |.+... |. +++|.+++
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~E~-V~I~~~-k~-~itl~G~~ 63 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQP-VYVPKT-KN-LITLAGLS 63 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCceEEEE-EEECcC-Cc-cEEEEeCC
Confidence 4678999999773322 234789999999843 444211 23 78888875
No 37
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.39 E-value=1e-05 Score=74.26 Aligned_cols=135 Identities=23% Similarity=0.187 Sum_probs=111.3
Q ss_pred eEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCC
Q 043588 153 TLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGT 232 (397)
Q Consensus 153 ~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s 232 (397)
.|.+.++++..|++.++.+. ..++.+..+.+++|++++|.. +..||.+..+++++|+++.+.....+|.+.. +
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s 87 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG-S 87 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-C
Confidence 58888999999999999765 467799999999999999997 4689999999999999999999779999988 4
Q ss_pred eeEEEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecC-cccEE
Q 043588 233 KNLWIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNV-QFPIV 310 (397)
Q Consensus 233 ~nv~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~-~~~i~ 310 (397)
.+.+|+++++... .||.+.. ..+.+|+++++.+...|+.+... .+.++++.++.+. ..++.
T Consensus 88 ~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 88 SNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 5559999999865 5776632 24578999999988889988643 4578888888887 67887
Q ss_pred E
Q 043588 311 I 311 (397)
Q Consensus 311 i 311 (397)
+
T Consensus 151 ~ 151 (236)
T PF05048_consen 151 F 151 (236)
T ss_pred E
Confidence 3
No 38
>PLN02176 putative pectinesterase
Probab=98.37 E-value=0.00021 Score=68.17 Aligned_cols=197 Identities=18% Similarity=0.128 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... .--+++|++|+|... |.+... |. +++|.++| ++..-.+..
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~Ip~~-k~-~vtl~G~g~~~TiIt~~~~~----------------- 109 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNGIYREK-VTIPKE-KG-YIYMQGKGIEKTIIAYGDHQ----------------- 109 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCcEEEEE-EEECCC-Cc-cEEEEEcCCCceEEEEeCCc-----------------
Confidence 4778999998763322 224688999999854 344211 24 89998875 222100000
Q ss_pred EEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----------eEEEE-eceecEEEEeEEE
Q 043588 124 SIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----------FHIVI-NGCKDVHIEGVTV 192 (397)
Q Consensus 124 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----------~~i~~-~~~~nv~i~n~~i 192 (397)
++ + ....+. ..++++..+|+++.|... ..+.+ ...+...+.+|+|
T Consensus 110 ----~t-~------------------~saT~~-v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f 165 (340)
T PLN02176 110 ----AT-D------------------TSATFT-SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSF 165 (340)
T ss_pred ----cc-c------------------cceEEE-EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEE
Confidence 00 0 001122 246777777777777531 22222 2456677777777
Q ss_pred ECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC---------ceeEEeeecccCCcCCEE
Q 043588 193 IAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG---------HGISIGSLAKDLIEEGVQ 263 (397)
Q Consensus 193 ~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~---------~gi~igs~~~~~~~~~v~ 263 (397)
.... |-+... ..+-..++|.|...=|-|- |.....++||++..- .| .|-..+ +.....-.
T Consensus 166 ~G~Q-----DTLy~~-~gRqyf~~CyIeG~VDFIF---G~a~a~Fe~C~I~s~~~~~~~~~~~g-~ITA~~-r~~~~~~~ 234 (340)
T PLN02176 166 DGFQ-----DTLFDG-KGRHYYKRCVISGGIDFIF---GYAQSIFEGCTLKLTLGIYPPNEPYG-TITAQG-RPSPSDKG 234 (340)
T ss_pred eccc-----ceeEeC-CcCEEEEecEEEecccEEe---cCceEEEeccEEEEecccCCCCCCcE-EEEeCC-CCCCCCCc
Confidence 7632 323322 2456677777776544442 234677777776521 12 111111 11112234
Q ss_pred EEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEec
Q 043588 264 NVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 264 nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
...|.||++.+.. -..++ +..+.-..+.|.|..|.+
T Consensus 235 GfvF~~C~itg~g-~~yLG----RPW~~yarvVf~~t~m~~ 270 (340)
T PLN02176 235 GFVFKDCTVTGVG-KALLG----RAWGSYARVIFYRSRFSD 270 (340)
T ss_pred EEEEECCEEccCc-ceeee----cCCCCCceEEEEecCcCC
Confidence 6777777777642 12222 122223456666666654
No 39
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=7e-05 Score=68.70 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=120.9
Q ss_pred eEEEEccEEEeeccccccCCCcceEEEecccceEEEc-e---eeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEe
Q 043588 91 ITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-G---ALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRING 166 (397)
Q Consensus 91 ~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G---~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~ 166 (397)
+.|.+.|+|..+. ++ +..+.+..+.|.+|.| | ++.|- .+.++...||.|++
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g~-------------------gl~i~~a~NVIirN 131 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVGG-------------------GLKIRDAGNVIIRN 131 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEec-------------------eEEEEeCCcEEEEe
Confidence 4667778777653 11 1237777889999999 4 44432 37788899999999
Q ss_pred eEEecCc-----ceEEEE-eceecEEEEeEEEECCCC---CCCCCce-eee-cceeEEEEecEEecCCceEEeCCC----
Q 043588 167 LLSLNSQ-----MFHIVI-NGCKDVHIEGVTVIAPGN---SPNTDGI-HVQ-LSTNVKITNCTIKTGDDCIPIGPG---- 231 (397)
Q Consensus 167 v~i~~~~-----~~~i~~-~~~~nv~i~n~~i~~~~~---~~~~DGi-~~~-~s~nv~I~n~~i~~~dD~i~i~~~---- 231 (397)
++|...+ ...|.+ ..+.|+.|++|++..... ..-.||. ++. .+..|+|.+|.|...+-++-+++.
T Consensus 132 ltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~ 211 (345)
T COG3866 132 LTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSN 211 (345)
T ss_pred eEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccc
Confidence 9998876 467888 789999999999998432 1233444 554 367899999999987777766652
Q ss_pred ----CeeEEEEeeEEecC--ce--eEEeeecccCCcCCEEEEEEEeeEEeCCc-ceEEEEeecCCCCceEEceEEEEEEE
Q 043588 232 ----TKNLWIERVTCGPG--HG--ISIGSLAKDLIEEGVQNVTVFKTVFTGTT-NGFRIKSWARPSNGFVQGVSFIDAIM 302 (397)
Q Consensus 232 ----s~nv~i~n~~~~~~--~g--i~igs~~~~~~~~~v~nI~i~n~~~~~~~-~gi~i~~~~~~~~g~i~ni~~~ni~~ 302 (397)
-.+|++.+|+|.+. ++ +++|. +++.|+.++... .|+.+.- |.-.-|..|+..+
T Consensus 212 ~~~~~~kvT~hhNyFkn~~qR~PriRfG~------------vHvyNNYy~~~~~~g~a~~i------G~~AkiyvE~NyF 273 (345)
T COG3866 212 YDDGKYKVTIHHNYFKNLYQRGPRIRFGM------------VHVYNNYYEGNPKFGVAITI------GTSAKIYVENNYF 273 (345)
T ss_pred ccCCceeEEEeccccccccccCCceEeeE------------EEEeccccccCcccceEEee------ccceEEEEeccee
Confidence 25699999999864 33 66654 667777777532 3433321 1112367777777
Q ss_pred ecCcccEEE
Q 043588 303 RNVQFPIVI 311 (397)
Q Consensus 303 ~~~~~~i~i 311 (397)
++...++.+
T Consensus 274 ~~~~~~~~f 282 (345)
T COG3866 274 ENGSEGLGF 282 (345)
T ss_pred ccCCCCcee
Confidence 776665543
No 40
>PLN02497 probable pectinesterase
Probab=98.33 E-value=0.00019 Score=68.25 Aligned_cols=48 Identities=25% Similarity=0.184 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
-|-..||+||+++.... .--+++|.||+|... +.+... |. +++|+++|
T Consensus 42 Gdf~TIq~AIdavP~~~~~~~~I~Ik~G~Y~Ek-V~Ip~~-k~-~itl~G~g 90 (331)
T PLN02497 42 GNFTTIQSAIDSVPSNNKHWFCINVKAGLYREK-VKIPYD-KP-FIVLVGAG 90 (331)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCcEEEEE-EEecCC-CC-cEEEEecC
Confidence 34778999998773322 123699999999754 333211 24 88888775
No 41
>PLN02634 probable pectinesterase
Probab=98.28 E-value=0.0004 Score=66.57 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
-|-..||+||+++.... .--+++|.||+|... +.+... |. +++|+++|
T Consensus 66 Gdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-k~-~ItL~G~g 114 (359)
T PLN02634 66 GDFRSVQDAVDSVPKNNTMSVTIKINAGFYREK-VVVPAT-KP-YITFQGAG 114 (359)
T ss_pred CCccCHHHHHhhCcccCCccEEEEEeCceEEEE-EEEcCC-CC-eEEEEecC
Confidence 35778999999763222 234789999999854 333211 24 89998876
No 42
>PLN02665 pectinesterase family protein
Probab=98.28 E-value=0.00056 Score=65.99 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhhccCC-CcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 48 STQAFAKAWDAACTSTE-SATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~~-g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
|-..||+||+++..... --+++|.+|+|... +.+... |. +++|++++
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-kp-~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPGEYNEK-ITIDRS-KP-FVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCcEEEEE-EEecCC-CC-EEEEEecC
Confidence 57789999997633222 24788999999854 344211 24 78887774
No 43
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.16 E-value=4.2e-05 Score=68.21 Aligned_cols=99 Identities=28% Similarity=0.402 Sum_probs=67.2
Q ss_pred EEEEe-ceecEEEEeEEEECC-----------CCCCCCCceeeecceeEEEEecEEecC---------CceEEeCCCCee
Q 043588 176 HIVIN-GCKDVHIEGVTVIAP-----------GNSPNTDGIHVQLSTNVKITNCTIKTG---------DDCIPIGPGTKN 234 (397)
Q Consensus 176 ~i~~~-~~~nv~i~n~~i~~~-----------~~~~~~DGi~~~~s~nv~I~n~~i~~~---------dD~i~i~~~s~n 234 (397)
++.+. .++||.|+|++|+.. ......|+|.+..+++|+|++|++..+ |..+.++.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~ 117 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDN 117 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEE
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCce
Confidence 45554 677777777777761 112467999999999999999999876 556788888999
Q ss_pred EEEEeeEEecCc-eeEEeeecccCCcCCEEEEEEEeeEEeCC
Q 043588 235 LWIERVTCGPGH-GISIGSLAKDLIEEGVQNVTVFKTVFTGT 275 (397)
Q Consensus 235 v~i~n~~~~~~~-gi~igs~~~~~~~~~v~nI~i~n~~~~~~ 275 (397)
|+|++|.|...+ +.-+|+......... ..+++.++.+.++
T Consensus 118 vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 118 VTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 999999998653 455666422222233 8999999999764
No 44
>smart00656 Amb_all Amb_all domain.
Probab=98.15 E-value=0.00013 Score=64.37 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=82.0
Q ss_pred EEEEccCCeEEEeeEEecCcc------eEEEEeceecEEEEeEEEECCC----CCCCCCce-eee-cceeEEEEecEEec
Q 043588 154 LRFTNSNNIRINGLLSLNSQM------FHIVINGCKDVHIEGVTVIAPG----NSPNTDGI-HVQ-LSTNVKITNCTIKT 221 (397)
Q Consensus 154 i~~~~~~nv~i~~v~i~~~~~------~~i~~~~~~nv~i~n~~i~~~~----~~~~~DGi-~~~-~s~nv~I~n~~i~~ 221 (397)
+.+..++||.|+++++.+... .+|.+..+++|.|++|++.... .....||. ++. .+.+++|++|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 566668899999999887533 5888889999999999999741 01124554 444 47899999999987
Q ss_pred CCceEEeCCCCe-------eEEEEeeEEecCce--eEEeeecccCCcCCEEEEEEEeeEEeCCc-ceEEE
Q 043588 222 GDDCIPIGPGTK-------NLWIERVTCGPGHG--ISIGSLAKDLIEEGVQNVTVFKTVFTGTT-NGFRI 281 (397)
Q Consensus 222 ~dD~i~i~~~s~-------nv~i~n~~~~~~~g--i~igs~~~~~~~~~v~nI~i~n~~~~~~~-~gi~i 281 (397)
.+-+.-++++.+ +|++.+|++....+ -++. .. .+.+.|+.+.+.. +++.+
T Consensus 114 h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 114 HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------FG--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred CCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------CC--EEEEEeeEEeCcccEeEec
Confidence 666666666422 69999999875322 2221 11 5788899888864 44444
No 45
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.11 E-value=0.00095 Score=65.27 Aligned_cols=52 Identities=25% Similarity=0.188 Sum_probs=33.6
Q ss_pred CCCCcchHHHHHHHHHHhhccC--CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 42 GNGVTDSTQAFAKAWDAACTST--ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 42 ~dg~tddt~aiq~Ai~~a~~~~--~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
+||. -|-..||+||+++.... .-.+|+|.+|+|... |.+... |. +++|+++|
T Consensus 88 ~dGs-Gdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~Ek-V~Ip~~-kp-~ItL~G~G 141 (422)
T PRK10531 88 GTQG-VTHTTVQAAVDAAIAKRTNKRQYIAVMPGTYQGT-VYVPAA-AP-PITLYGTG 141 (422)
T ss_pred CCCC-CCccCHHHHHhhccccCCCceEEEEEeCceeEEE-EEeCCC-Cc-eEEEEecC
Confidence 4443 24678999998653222 235788999999854 444211 25 89999865
No 46
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=98.07 E-value=0.0016 Score=65.50 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHhhc--cCCCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEeccc
Q 043588 47 DSTQAFAKAWDAACT--STESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVS 121 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~--~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ 121 (397)
-|-..||+||+++.. ...--+++|.+|+|... +.+... |. +++|.++| ++....+
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-nItl~G~g~~~TiIt~~~----------------- 294 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAGTYHEN-LNIPTK-QK-NVMLVGDGKGKTVIVGSR----------------- 294 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCCeeEEE-EecCCC-Cc-eEEEEEcCCCCeEEEeCC-----------------
Confidence 357889999986422 12346899999999854 333211 24 88888876 2221000
Q ss_pred ceEEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECC
Q 043588 122 GVSIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAP 195 (397)
Q Consensus 122 ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~ 195 (397)
+. -.| ++. ...-.....+++..+|++|.|... ..+.+ ..++...+.+|+|.+.
T Consensus 295 ~~-~~g~~T~--------------------~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~Gy 353 (529)
T PLN02170 295 SN-RGGWTTY--------------------QTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGY 353 (529)
T ss_pred cC-CCCCccc--------------------cceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEecc
Confidence 00 001 110 112344557788888888887632 23333 2467777888888763
Q ss_pred CCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCc----eeEEeeecccCCcCCEEEEEEEeeE
Q 043588 196 GNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH----GISIGSLAKDLIEEGVQNVTVFKTV 271 (397)
Q Consensus 196 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~----gi~igs~~~~~~~~~v~nI~i~n~~ 271 (397)
. |-+.... .+-..++|.|...=|-| + |.....++||++..-. .-.|-..+ +.+...-..+.|.||+
T Consensus 354 Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avFq~C~I~~~~~~~~~g~ITAq~-R~~~~~~~Gfvf~~C~ 423 (529)
T PLN02170 354 Q-----DSLYTHS-KRQFYRETDITGTVDFI-F--GNSAVVFQSCNIAARKPSGDRNYVTAQG-RSDPNQNTGISIHNCR 423 (529)
T ss_pred C-----CcceeCC-CCEEEEeeEEcccccee-c--ccceEEEeccEEEEecCCCCceEEEecC-CCCCCCCceEEEEeeE
Confidence 3 3333332 34566777777644443 1 2356777777765311 11121111 1112233567777777
Q ss_pred EeCCcceEEEEeecCCCCceEEceEEEEEEEec
Q 043588 272 FTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 272 ~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
+.+.. -..++ +....-..+.|.+..|.+
T Consensus 424 it~~~-~~yLG----RPW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 424 ITAES-MTYLG----RPWKEYSRTVVMQSFIDG 451 (529)
T ss_pred EecCC-ceeee----CCCCCCceEEEEecccCC
Confidence 77642 22222 122223456666666554
No 47
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=98.05 E-value=0.0013 Score=67.53 Aligned_cols=207 Identities=13% Similarity=0.141 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... .--+|+|.+|+|....+.+... |. +++|.++| ++... .+++
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~-ni~l~G~g~~~TiIt~-----------------~~~~ 343 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-KT-NLMFIGDGKGKTVITG-----------------GKSI 343 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-Cc-eEEEEecCCCCeEEec-----------------CCcc
Confidence 4678999998773322 2357899999998754555321 24 88888876 22210 0000
Q ss_pred EEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 043588 124 SIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 124 ~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 197 (397)
..| +++ ...-.....+++..++++|.|... ..+.+. .++...+.+|+|....
T Consensus 344 -~~~~~t~--------------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q- 401 (587)
T PLN02484 344 -FDNLTTF--------------------HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ- 401 (587)
T ss_pred -cCCCccc--------------------ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-
Confidence 000 110 112233456778888888887532 333332 4677788888888633
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-----ceeEEeeecccCCcCCEEEEEEEeeEE
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLIEEGVQNVTVFKTVF 272 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~nI~i~n~~~ 272 (397)
|-+... +.+-..++|.|...=|-| + |.....++||++..- ..-.|-..+ +.+...-..+.|.||++
T Consensus 402 ----DTLy~~-~~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~~ITAq~-r~~~~~~~G~vf~~c~i 472 (587)
T PLN02484 402 ----DTLYVH-SNRQFFRECDIYGTVDFI-F--GNAAVVLQNCSIYARKPMAQQKNTITAQN-RKDPNQNTGISIHACRI 472 (587)
T ss_pred ----cccccC-CCcEEEEecEEEecccee-c--ccceeEEeccEEEEecCCCCCceEEEecC-CCCCCCCcEEEEEeeEE
Confidence 333332 235567778877644443 1 245777788877531 111121111 11122345677888888
Q ss_pred eCCcceE----EEEeecCCCCceEEceEEEEEEEec
Q 043588 273 TGTTNGF----RIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 273 ~~~~~gi----~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
.....-. ..+.+-++....-..+.|.+..|.+
T Consensus 473 ~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~ 508 (587)
T PLN02484 473 LAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGD 508 (587)
T ss_pred ecCCccccccCccceeccCCCCCCceEEEEecccCC
Confidence 7642100 0111112223334556666666654
No 48
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=98.03 E-value=0.0019 Score=65.16 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
-|-..||+||+++.... .--+|+|.||+|.. .+.+... |. +++|.++| ++.... .+
T Consensus 228 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~itl~G~g~~~TiIt~~-----------------~~ 287 (530)
T PLN02933 228 GNFTTINEAVSAAPNSSETRFIIYIKGGEYFE-NVELPKK-KT-MIMFIGDGIGKTVIKAN-----------------RS 287 (530)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEcCceEEE-EEEecCC-Cc-eEEEEEcCCCCcEEEeC-----------------Cc
Confidence 34678999998763322 23589999999984 3444321 24 88888876 222100 00
Q ss_pred eEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 043588 123 VSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 123 i~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 197 (397)
..+| |. .....-.....+++..+|++|.|... ..+.+. .++...+.+|+|....
T Consensus 288 ------~~dg-----~~---------T~~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q- 346 (530)
T PLN02933 288 ------RIDG-----WS---------TFQTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ- 346 (530)
T ss_pred ------cCCC-----Cc---------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-
Confidence 0011 00 00112234456788888888887532 233332 4666777777777632
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEe
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~ 243 (397)
|-+.... .+-..++|.|...=|-| + |.....++||++.
T Consensus 347 ----DTLy~~~-~Rqyy~~C~IeGtVDFI-F--G~a~avFq~C~i~ 384 (530)
T PLN02933 347 ----DTLYVHS-AKQFYRECDIYGTIDFI-F--GNAAVVFQNCSLY 384 (530)
T ss_pred ----cccccCC-CceEEEeeEEeccccee-c--cCceEEEeccEEE
Confidence 2233222 34566777776543433 1 2345667777664
No 49
>PLN02682 pectinesterase family protein
Probab=98.01 E-value=0.003 Score=60.99 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
-|-..||+||+++.... .--+|+|.||+|... +.+... |. +++|+++|
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~Ek-V~Ip~~-k~-~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYREK-VNIPPL-KA-YITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceeeEE-EEEecc-Cc-eEEEEecC
Confidence 45678999999763222 235789999999854 344211 25 89998876
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.99 E-value=0.0011 Score=67.74 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhhcc--CCCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTS--TESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~--~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
-|-..||+||+++... ..--+|+|.+|+|... +.+... |. +++|.++|
T Consensus 251 g~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~-V~i~~~-k~-~v~l~G~g 300 (553)
T PLN02708 251 CCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEET-VRVPLE-KK-NVVFLGDG 300 (553)
T ss_pred CCccCHHHHHHhhhhccCCccEEEEEeCceEEee-eeecCC-Cc-cEEEEecC
Confidence 3467899999877332 2235899999999854 333211 24 88888876
No 51
>PLN02916 pectinesterase family protein
Probab=97.96 E-value=0.0027 Score=63.64 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHhhcc----CCCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEec
Q 043588 47 DSTQAFAKAWDAACTS----TESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEG 119 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~----~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~ 119 (397)
-|-..||+||+++... ..--+|+|.||+|... +.+... |. +++|.++| ++....
T Consensus 197 G~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~~~TiIt~~---------------- 257 (502)
T PLN02916 197 GTHRTINQALAALSRMGKSRTNRVIIYVKAGVYNEK-VEIDRH-MK-NVMFVGDGMDKTIITNN---------------- 257 (502)
T ss_pred CCccCHHHHHHhcccccCCCCceEEEEEeCceeeEE-EEecCC-Cc-eEEEEecCCCCcEEEeC----------------
Confidence 3467899999876321 1235899999999853 444221 24 88888876 222100
Q ss_pred ccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEEC
Q 043588 120 VSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIA 194 (397)
Q Consensus 120 ~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~ 194 (397)
.++ -+|.+ .....-.....+++..+|++|.|... ..+.+. .++...+.+|+|..
T Consensus 258 -~~~------~~g~~--------------T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G 316 (502)
T PLN02916 258 -RNV------PDGST--------------TYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKG 316 (502)
T ss_pred -Ccc------CCCCc--------------ceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec
Confidence 000 00000 00112334456788888888887632 233332 46667777777776
Q ss_pred CCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-----ceeEEeeecccCCcCCEEEEEEEe
Q 043588 195 PGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLIEEGVQNVTVFK 269 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~nI~i~n 269 (397)
.. |-+.... .+-..++|.|...=|-|- |.....++||++... ..-.|-..+ +.+...-..+.|.|
T Consensus 317 ~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~~g~ITAq~-r~~~~~~tGfvf~~ 386 (502)
T PLN02916 317 YQ-----DTLFVHS-LRQFYRDCHIYGTIDFIF---GDAAVVFQNCDIFVRRPMDHQGNMITAQG-RDDPHENTGISIQH 386 (502)
T ss_pred cC-----ceeEeCC-CCEEEEecEEecccceec---cCceEEEecCEEEEecCCCCCcceEEecC-CCCCCCCcEEEEEe
Confidence 32 3333332 345667777776444431 235677777776431 111121111 11122335677777
Q ss_pred eEEeCC
Q 043588 270 TVFTGT 275 (397)
Q Consensus 270 ~~~~~~ 275 (397)
|++...
T Consensus 387 C~it~~ 392 (502)
T PLN02916 387 SRVRAS 392 (502)
T ss_pred eEEecC
Confidence 777664
No 52
>PLN02671 pectinesterase
Probab=97.95 E-value=0.0022 Score=61.59 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
-|-..||+||+++.... .--+|+|.||+|... |.+... |. +++|.++|
T Consensus 69 Gdf~TIQ~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~I~~~-k~-~Itl~G~g 117 (359)
T PLN02671 69 GDSLTVQGAVDMVPDYNSQRVKIYILPGIYREK-VLVPKS-KP-YISFIGNE 117 (359)
T ss_pred CCccCHHHHHHhchhcCCccEEEEEeCceEEEE-EEECCC-CC-eEEEEecC
Confidence 34778999999774322 235899999999854 334211 24 88887764
No 53
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.0036 Score=63.24 Aligned_cols=178 Identities=14% Similarity=0.080 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHhhcc-CCCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccc
Q 043588 47 DSTQAFAKAWDAACTS-TESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
-|-..||+||+++... ...-+++|.+|+|... +.+... |. +++|.++| ++.... .+
T Consensus 216 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~~~TiIt~~-----------------~~ 275 (520)
T PLN02201 216 GNFTTIMDAVLAAPDYSTKRYVIYIKKGVYLEN-VEIKKK-KW-NIMMVGDGIDATVITGN-----------------RS 275 (520)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCceeEEE-EEecCC-Cc-eEEEEecCCCCcEEEeC-----------------Cc
Confidence 3577899999876332 2235899999999854 344221 24 78888876 222100 00
Q ss_pred eEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 043588 123 VSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 123 i~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 197 (397)
..+|.+ .-...-.....+++..+|++|.|... ..+.+. .++...+.+|+|...
T Consensus 276 ------~~~g~~--------------T~~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~-- 333 (520)
T PLN02201 276 ------FIDGWT--------------TFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGY-- 333 (520)
T ss_pred ------cCCCCc--------------ccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeecc--
Confidence 001100 00112234457788888888887632 233332 456677777777763
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC------ceeEEeeecccCCcCCEEEEEEEeeE
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HGISIGSLAKDLIEEGVQNVTVFKTV 271 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~nI~i~n~~ 271 (397)
.|-+.... .+-..++|.|...=|-| + |.....++||++..- .| .|-..+ +.+...-..+.|.||+
T Consensus 334 ---QDTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avf~~C~i~~~~~~~~~~~-~iTAq~-r~~~~~~~Gfvf~~C~ 404 (520)
T PLN02201 334 ---QDTLYTHT-MRQFYRECRITGTVDFI-F--GDATAVFQNCQILAKKGLPNQKN-TITAQG-RKDPNQPTGFSIQFSN 404 (520)
T ss_pred ---CCeeEeCC-CCEEEEeeEEeecccEE-e--cCceEEEEccEEEEecCCCCCCc-eEEecC-CCCCCCCcEEEEEeeE
Confidence 23343332 34556777776544443 2 234677777776531 12 111111 1112234467777777
Q ss_pred EeCC
Q 043588 272 FTGT 275 (397)
Q Consensus 272 ~~~~ 275 (397)
+...
T Consensus 405 it~~ 408 (520)
T PLN02201 405 ISAD 408 (520)
T ss_pred EecC
Confidence 7653
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.92 E-value=0.00072 Score=63.97 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
-|-..||+||+++.... ..-+|+|.||+|... |.+... |. +++|.++|
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~i~~~-k~-~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYREK-VTIPRS-KP-NVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-ST-ST-TEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEccc-cEeccc-cc-eEEEEecC
Confidence 45667999999773222 235899999999853 444321 24 78887764
No 55
>PLN02432 putative pectinesterase
Probab=97.87 E-value=0.0027 Score=59.54 Aligned_cols=47 Identities=26% Similarity=0.175 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
|-..||+||+++.... .--+++|.||+|... |.+... |. +++|.+++
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~ip~~-k~-~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYREK-VVVPAD-KP-FITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeEEE-EEEecc-Cc-eEEEEEcC
Confidence 4778999999773322 235789999999754 334211 24 78887764
No 56
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0013 Score=67.27 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHhhccC----CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecc
Q 043588 48 STQAFAKAWDAACTST----ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGV 120 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~----~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~ 120 (397)
|-..||+||+++.... .--+++|.+|+|... |.+... |. +++|.++| ++... .
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~~~TiIt~-----------------~ 320 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEY-VSIPKN-KK-YLMMIGDGINQTVITG-----------------N 320 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEE-EEecCC-Cc-eEEEEecCCCCcEEEc-----------------C
Confidence 4678999998763321 124799999999854 444211 24 88888876 22210 0
Q ss_pred cceEEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEEC
Q 043588 121 SGVSIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIA 194 (397)
Q Consensus 121 ~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~ 194 (397)
.+. ..| ++. +. .-.....+++..+|++|.|... ..+.+ ..++...+.+|+|.+
T Consensus 321 ~~~-~~g~~T~-------------------~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G 379 (566)
T PLN02713 321 RSV-VDGWTTF-------------------NS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA 379 (566)
T ss_pred Ccc-cCCCccc-------------------cc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc
Confidence 000 001 111 11 2233456889999999988532 23333 356778888888887
Q ss_pred CCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCc---e--eEEeeecccCCcCCEEEEEEEe
Q 043588 195 PGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH---G--ISIGSLAKDLIEEGVQNVTVFK 269 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~---g--i~igs~~~~~~~~~v~nI~i~n 269 (397)
. .|-+.... .+-..++|.|...=|-|- |...+.++||.+.... + -.|-..+ +.+...-..+.|.|
T Consensus 380 ~-----QDTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~~~~~~~~~~~iTAq~-r~~~~~~~G~vf~~ 449 (566)
T PLN02713 380 Y-----QDTLYTHS-LRQFYRECDIYGTVDFIF---GNAAVVFQNCNLYPRLPMQGQFNTITAQG-RTDPNQNTGTSIQN 449 (566)
T ss_pred C-----CcceEECC-CCEEEEeeEEecccceec---ccceEEEeccEEEEecCCCCCcceeeecC-CCCCCCCCEEEEEc
Confidence 3 33344433 456788888876545442 3467888888875321 1 1121111 11223345788888
Q ss_pred eEEeCCcceE----EEEeecCCCCceEEceEEEEEEEec
Q 043588 270 TVFTGTTNGF----RIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 270 ~~~~~~~~gi----~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
|++....... ..+.+-++....-..+.|.+..|.+
T Consensus 450 c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~ 488 (566)
T PLN02713 450 CTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDG 488 (566)
T ss_pred CEEecCCcccccccccceeeecCCCCcceEEEEecccCC
Confidence 8888753210 0111112222334566777777665
No 57
>PLN02304 probable pectinesterase
Probab=97.86 E-value=0.0068 Score=58.65 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
-|-..||+||+++.... .--+|+|.+|+|... |.+... |. +++|+++|
T Consensus 85 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-K~-~Itl~G~g 133 (379)
T PLN02304 85 CNFTTVQSAVDAVGNFSQKRNVIWINSGIYYEK-VTVPKT-KP-NITFQGQG 133 (379)
T ss_pred CCccCHHHHHhhCcccCCCcEEEEEeCeEeEEE-EEECCC-CC-cEEEEecC
Confidence 34678999999763322 235789999999854 334211 25 89998876
No 58
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.84 E-value=0.0014 Score=59.07 Aligned_cols=123 Identities=25% Similarity=0.362 Sum_probs=82.8
Q ss_pred eEEEeeEEecCc------ceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeE
Q 043588 162 IRINGLLSLNSQ------MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNL 235 (397)
Q Consensus 162 v~i~~v~i~~~~------~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv 235 (397)
+.++++++.... ..++.+..++++.|+|+++.+ .+.+|+.+..+....+.+.... .++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 347777776433 256888899999999999998 3567888875555555444322 123333345677
Q ss_pred EEEeeEEecC-ceeEEeeecccCCcCCEEEEEEEeeEEeC-CcceEEEEeecCCCCceEEceEEEEEEEecCcccE
Q 043588 236 WIERVTCGPG-HGISIGSLAKDLIEEGVQNVTVFKTVFTG-TTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPI 309 (397)
Q Consensus 236 ~i~n~~~~~~-~gi~igs~~~~~~~~~v~nI~i~n~~~~~-~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i 309 (397)
.+.|+.+..+ .|+..++ ++++++||.+.+ ...|+.+.... ++.++|++++++..++
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCccCc
Confidence 8888888765 4543322 689999999998 66888886532 2888888888887665
No 59
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.84 E-value=0.0047 Score=62.91 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhhccCC-CcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTSTE-SATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~~-g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++..... --+|+|.+|+|... +.+... |. +++|.++| ++... ..+.
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~~~TiIt~-----------------~~~~ 306 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKEN-VEIGKK-KK-NLMLVGDGMDSTIITG-----------------SLNV 306 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeEE-EEecCC-Cc-eEEEEecCCCCcEEEe-----------------CCcc
Confidence 56789999987743222 24899999999853 344211 24 88888876 22110 0000
Q ss_pred EEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCCC
Q 043588 124 SIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGNS 198 (397)
Q Consensus 124 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 198 (397)
.||.+ .....-.....+++..+|++|.|... ..+.+. .++...+.+|+|.+..
T Consensus 307 ------~dg~~--------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-- 364 (548)
T PLN02301 307 ------IDGST--------------TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ-- 364 (548)
T ss_pred ------CCCCC--------------ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc--
Confidence 01100 00112334456788888888887532 233332 4677788888887633
Q ss_pred CCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCc---e--eEEeeecccCCcCCEEEEEEEeeEEe
Q 043588 199 PNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH---G--ISIGSLAKDLIEEGVQNVTVFKTVFT 273 (397)
Q Consensus 199 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~---g--i~igs~~~~~~~~~v~nI~i~n~~~~ 273 (397)
|-+.... .+-..+||.|...=|-|- |.....++||++..-. + -.|-..+ +.+...-..+.|.||++.
T Consensus 365 ---DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTAqg-r~~~~~~tG~vf~~c~i~ 436 (548)
T PLN02301 365 ---DTLYAHS-LRQFYRDSYITGTVDFIF---GNAAVVFQNCKIVARKPMAGQKNMVTAQG-RTDPNQNTGISIQKCDII 436 (548)
T ss_pred ---ccceecC-CcEEEEeeEEEeccceec---ccceeEEeccEEEEecCCCCCCceEEecC-CCCCCCCCEEEEEeeEEe
Confidence 3333332 345777787776544442 2457777777775311 1 1121111 112233456778888877
Q ss_pred CC
Q 043588 274 GT 275 (397)
Q Consensus 274 ~~ 275 (397)
..
T Consensus 437 ~~ 438 (548)
T PLN02301 437 AS 438 (548)
T ss_pred cC
Confidence 64
No 60
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.84 E-value=0.0069 Score=62.15 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... .--+++|.||+|... +.+... |. +++|.++| ++... ..+.
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E~-V~i~~~-k~-~i~l~G~g~~~TiIt~-----------------~~~~ 329 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQGVYNEK-VDVTKK-MT-HVTFIGDGPTKTKITG-----------------SLNF 329 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCceeEEE-EEecCC-CC-cEEEEecCCCceEEEe-----------------cccc
Confidence 4677999998763322 235799999999864 444221 24 88998886 22210 0110
Q ss_pred EEEc--eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCC
Q 043588 124 SIIG--GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPG 196 (397)
Q Consensus 124 ~I~G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~ 196 (397)
.. | ++. +. .-.....+++..+|++|.|... ..+.+. .++...+.+|+|....
T Consensus 330 ~~-g~~~T~-------------------~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q 388 (572)
T PLN02990 330 YI-GKVKTY-------------------LT-ATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ 388 (572)
T ss_pred CC-CCccce-------------------ee-eEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc
Confidence 00 0 111 11 1233356788888888887642 233332 4677788888888633
Q ss_pred CCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC---ce--eEEeeecccCCcCCEEEEEEEeeE
Q 043588 197 NSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG---HG--ISIGSLAKDLIEEGVQNVTVFKTV 271 (397)
Q Consensus 197 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~nI~i~n~~ 271 (397)
|-+... +.+-..++|.|...=|-|- |.....++||++..- .+ -.|-..+ +.+...-..+.|.||+
T Consensus 389 -----DTLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~-r~~~~~~~G~vf~~C~ 458 (572)
T PLN02990 389 -----DTLYVH-SHRQFFRDCTVSGTVDFIF---GDAKVVLQNCNIVVRKPMKGQSCMITAQG-RSDVRESTGLVLQNCH 458 (572)
T ss_pred -----chhccC-CCcEEEEeeEEecccceEc---cCceEEEEccEEEEecCCCCCceEEEeCC-CCCCCCCceEEEEeeE
Confidence 333332 2355667888776544442 235677788877531 11 1221111 1112234567788888
Q ss_pred EeCC
Q 043588 272 FTGT 275 (397)
Q Consensus 272 ~~~~ 275 (397)
+...
T Consensus 459 it~~ 462 (572)
T PLN02990 459 ITGE 462 (572)
T ss_pred EecC
Confidence 8764
No 61
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.80 E-value=0.0057 Score=62.20 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... +.-+|+|.+|+|...- .+... |. +++|.++| ++.... ++.
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~V-~I~~~-k~-~i~l~G~g~~~tiIt~~-----------------~~~ 302 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKENI-DMKKK-KT-NIMLVGDGIGQTVVTGN-----------------RNF 302 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEEE-eccCC-Cc-eEEEEEcCCCCeEEEeC-----------------ccc
Confidence 4678999998763322 2358999999997642 22211 24 88888775 222100 000
Q ss_pred EEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECCCC
Q 043588 124 SIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 124 ~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~~~ 197 (397)
..| +++ +. .-.....+++..+|++|.|... ..+.+ ..++.+.+.+|+|.+..
T Consensus 303 -~~g~~T~-------------------~s-aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q- 360 (537)
T PLN02506 303 -MQGWTTF-------------------RT-ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ- 360 (537)
T ss_pred -cCCCCcc-------------------cc-eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc-
Confidence 001 111 11 2334567788888888887632 22322 24666777777777633
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-----ceeEEeeecccCCcCCEEEEEEEeeEE
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLIEEGVQNVTVFKTVF 272 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~nI~i~n~~~ 272 (397)
|-+.... .+-..++|.|...=|-| + |.....++||++..- ..-.|-..++ .+...-..+.|+||++
T Consensus 361 ----DTLy~~~-~rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~r~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i 431 (537)
T PLN02506 361 ----DTLYAHS-LRQFYRECEIYGTIDFI-F--GNGAAVLQNCKIYTRVPLPLQKVTITAQGR-KSPHQSTGFSIQDSYV 431 (537)
T ss_pred ----ccceecC-CceEEEeeEEecccceE-c--cCceeEEeccEEEEccCCCCCCceEEccCC-CCCCCCcEEEEEcCEE
Confidence 2233222 34566777776544433 2 234567777776531 1111211111 1112234566777777
Q ss_pred eCCcceEEEEeecCCCCceEEceEEEEEEEec
Q 043588 273 TGTTNGFRIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 273 ~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
.... ...++ +..+.-..+.|.+..|.+
T Consensus 432 ~~~~-~~yLG----RPW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 432 LATQ-PTYLG----RPWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred ccCC-ceEEe----cCCCCCceEEEEecCCCC
Confidence 6532 22222 122223445555555554
No 62
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.79 E-value=0.0024 Score=65.01 Aligned_cols=208 Identities=12% Similarity=0.099 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHhhccCC----CcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEec
Q 043588 47 DSTQAFAKAWDAACTSTE----SATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEG 119 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~----g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~ 119 (397)
-+-..||+||+++..... --++||.+|+|... |.+... |. +++|.++| ++....
T Consensus 233 G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E~-V~i~~~-k~-~i~l~G~g~~~tiIt~~---------------- 293 (538)
T PLN03043 233 DNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEEY-VVVPKN-KK-NIMLIGDGINKTIITGN---------------- 293 (538)
T ss_pred CCCcCHHHHHHhccccCCCCcceEEEEEcCeeeEEE-EEeCCC-CC-cEEEEecCCCCeEEEeC----------------
Confidence 347789999987633221 24899999999854 444211 24 88888876 222100
Q ss_pred ccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEEC
Q 043588 120 VSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIA 194 (397)
Q Consensus 120 ~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~ 194 (397)
.++ .|| |. .-...-.....+++..+|++|.|... ..+.+. .++...+.+|+|..
T Consensus 294 -~~~------~dg-----~~---------T~~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~g 352 (538)
T PLN03043 294 -HSV------VDG-----WT---------TFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEG 352 (538)
T ss_pred -Ccc------CCC-----Cc---------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEec
Confidence 000 111 10 00112344456889999999988632 334333 56778888888887
Q ss_pred CCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-----ceeEEeeecccCCcCCEEEEEEEe
Q 043588 195 PGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLIEEGVQNVTVFK 269 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~nI~i~n 269 (397)
.. |-+... +.+-..+||.|...=|-|- |...+.++||++..- ..-.|-..+ +.+...-..+.|.|
T Consensus 353 yQ-----DTLy~~-~~rq~y~~c~I~GtVDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTA~~-r~~~~~~tG~~~~~ 422 (538)
T PLN03043 353 YQ-----DTLYVH-SLRQFYRECDIYGTVDFIF---GNAAAIFQNCNLYARKPMANQKNAFTAQG-RTDPNQNTGISIIN 422 (538)
T ss_pred cC-----cccccC-CCcEEEEeeEEeeccceEe---ecceeeeeccEEEEecCCCCCCceEEecC-CCCCCCCceEEEEe
Confidence 43 333333 2456778888876545442 245778888887531 111121111 11223345788888
Q ss_pred eEEeCCcceE----EEEeecCCCCceEEceEEEEEEEec
Q 043588 270 TVFTGTTNGF----RIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 270 ~~~~~~~~gi----~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
|++.....-. ..+.+-++....-..+.|.+..|.+
T Consensus 423 c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~ 461 (538)
T PLN03043 423 CTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGD 461 (538)
T ss_pred cEEecCCcccccccccceeccCCCCCCceEEEEecccCC
Confidence 8887643210 0111112222334566677776665
No 63
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.79 E-value=0.004 Score=62.23 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
-|-..||+||+++.... .--+++|.+|+|... +.+... |. +++|.++| ++....+ +
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-nItliGdg~~~TiIt~n~-----------------~ 266 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEI-VRIGST-KP-NLTLIGDGQDSTIITGNL-----------------S 266 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEEE-EEecCC-Cc-cEEEEecCCCceEEEEcc-----------------c
Confidence 45677999998773322 235899999999854 344211 24 88888876 2221100 0
Q ss_pred eEEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCC
Q 043588 123 VSIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPG 196 (397)
Q Consensus 123 i~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~ 196 (397)
+ ..| +++ ...-.....+++..+|++|.|... ..+.+. .++...+.+|+|....
T Consensus 267 ~-~~g~~T~--------------------~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ 325 (509)
T PLN02488 267 A-SNGKRTF--------------------YTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ 325 (509)
T ss_pred c-cCCCCce--------------------eeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC
Confidence 0 001 111 011233346677778888877532 233332 4567777777777632
Q ss_pred CCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-----ceeEEeeecccCCcCCEEEEEEEeeE
Q 043588 197 NSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLIEEGVQNVTVFKTV 271 (397)
Q Consensus 197 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~nI~i~n~~ 271 (397)
|-+... +.+-..++|.|...=|-|- |...+.++||++..- ..-.|-..+ +.+...-..+.|.||+
T Consensus 326 -----DTLy~~-~~RqyyrdC~I~GtVDFIF---G~a~avFq~C~I~sr~~~~~~~~~ITAq~-R~~~~~~tGfvf~~C~ 395 (509)
T PLN02488 326 -----DALYPH-RDRQFYRECFITGTVDFIC---GNAAAVFQFCQIVARQPMMGQSNVITAQS-RESKDDNSGFSIQKCN 395 (509)
T ss_pred -----cceeeC-CCCEEEEeeEEeeccceEe---cceEEEEEccEEEEecCCCCCCEEEEeCC-CCCCCCCcEEEEEeeE
Confidence 333332 3456677777766444442 245677777776531 111221111 1112233467777777
Q ss_pred EeCC
Q 043588 272 FTGT 275 (397)
Q Consensus 272 ~~~~ 275 (397)
+...
T Consensus 396 it~~ 399 (509)
T PLN02488 396 ITAS 399 (509)
T ss_pred EecC
Confidence 7764
No 64
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0024 Score=65.00 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHhhcc---CCCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecc
Q 043588 47 DSTQAFAKAWDAACTS---TESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGV 120 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~---~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~ 120 (397)
-|-..||+||+++... ..--+++|.+|+|... +.+... |. +++|.++| ++....
T Consensus 233 G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~~~TvIt~~----------------- 292 (539)
T PLN02995 233 GHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLN-ND-DIMLVGDGMRSTIITGG----------------- 292 (539)
T ss_pred CCccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCC-CC-cEEEEEcCCCCeEEEeC-----------------
Confidence 3577899999876321 2345789999999865 333211 24 89998886 222110
Q ss_pred cceEEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEEC
Q 043588 121 SGVSIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIA 194 (397)
Q Consensus 121 ~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~ 194 (397)
.+. -.| ++. ...-.....+++..+|++|.|... ..+.+. .++...+.+|+|.+
T Consensus 293 ~~~-~~~~~T~--------------------~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G 351 (539)
T PLN02995 293 RSV-KGGYTTY--------------------NSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEG 351 (539)
T ss_pred Ccc-CCCCccc--------------------ceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEec
Confidence 000 001 111 111233457788888888887642 233332 46777788888876
Q ss_pred CCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCc---e--eEEeeecccCCcCCEEEEEEEe
Q 043588 195 PGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH---G--ISIGSLAKDLIEEGVQNVTVFK 269 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~---g--i~igs~~~~~~~~~v~nI~i~n 269 (397)
..| -+... +.+-..++|.|...=|-|- |.....++||++..-. | -.|-..++ .+...-..+.|.|
T Consensus 352 ~QD-----TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~ 421 (539)
T PLN02995 352 YQD-----TLMVH-SQRQFYRECYIYGTVDFIF---GNAAAVFQNCIILPRRPLKGQANVITAQGR-ADPFQNTGISIHN 421 (539)
T ss_pred ccc-----hhccC-CCceEEEeeEEeeccceEe---cccceEEeccEEEEecCCCCCcceEecCCC-CCCCCCceEEEEe
Confidence 433 23322 2345777777776444442 2356777777775321 1 11211111 1122345677888
Q ss_pred eEEeCCcceE----EEEeecCCCCceEEceEEEEEEEecC
Q 043588 270 TVFTGTTNGF----RIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 270 ~~~~~~~~gi----~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
|++....... ..+.+-++..+.-..+.|.+..|.+.
T Consensus 422 c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 422 SRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNV 461 (539)
T ss_pred eEEecCCcccccccccceeccCCCCCCcceEEEeccccCc
Confidence 8877643210 01111122233345567777776553
No 65
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.72 E-value=0.0033 Score=64.02 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=78.8
Q ss_pred chHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccc
Q 043588 47 DSTQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
-|-..||+||+++.... .--+|+|.+|+|... +.+... |. +++|.++| ++.... .+
T Consensus 240 G~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E~-V~i~~~-k~-~i~l~G~g~~~TiIt~~-----------------~~ 299 (541)
T PLN02416 240 GNFSTITDAINFAPNNSNDRIIIYVREGVYEEN-VEIPIY-KT-NIVLIGDGSDVTFITGN-----------------RS 299 (541)
T ss_pred CCccCHHHHHHhhhhcCCceEEEEEeCceeEEE-EecCCC-Cc-cEEEEecCCCceEEeCC-----------------Cc
Confidence 35678999998763322 224689999999753 344211 24 88888876 222100 00
Q ss_pred eEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECCCC
Q 043588 123 VSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 123 i~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~~~ 197 (397)
. .+| |. ..+. .-.....+++..+|++|.|... ..+.+ ..++.+.+.+|+|.+..|
T Consensus 300 ~------~~g-----~~--------T~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD 359 (541)
T PLN02416 300 V------VDG-----WT--------TFRS-ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQD 359 (541)
T ss_pred c------CCC-----CC--------ccce-EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccc
Confidence 0 011 00 0011 2233347788888888887632 22222 245667777777776332
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEe
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~ 243 (397)
-+... +.+-..++|.|...=|-|- |.....++||++.
T Consensus 360 -----TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~ 396 (541)
T PLN02416 360 -----TLYVH-SFRQFYRECDIYGTIDYIF---GNAAVVFQACNIV 396 (541)
T ss_pred -----hhccC-CCceEEEeeEEeeccceee---ccceEEEeccEEE
Confidence 22222 2345667777765444331 2346667777664
No 66
>PLN02197 pectinesterase
Probab=97.64 E-value=0.011 Score=60.86 Aligned_cols=211 Identities=12% Similarity=0.032 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHhhccCC-CcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccc
Q 043588 47 DSTQAFAKAWDAACTSTE-SATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~-g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
-|-..||+||+++..... --+++|.+|+|... +.+... |. +++|.++| ++.... ++
T Consensus 285 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-ni~l~G~g~~~TiIt~~-----------------~~ 344 (588)
T PLN02197 285 GQFKTISQAVMACPDKNPGRCIIHIKAGIYNEQ-VTIPKK-KN-NIFMFGDGARKTVISYN-----------------RS 344 (588)
T ss_pred CCcCCHHHHHHhccccCCceEEEEEeCceEEEE-EEccCC-Cc-eEEEEEcCCCCeEEEec-----------------cc
Confidence 356789999987633222 24689999999854 333211 24 88888876 222111 11
Q ss_pred eEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 043588 123 VSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 123 i~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 197 (397)
....+ |.+ ..+. .-.....+++..++++|.|... ..+.+. .++...+.+|+|....
T Consensus 345 ~~~~~----g~~-------------T~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ- 405 (588)
T PLN02197 345 VKLSP----GTT-------------TSLS-GTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ- 405 (588)
T ss_pred cccCC----CCc-------------ccce-eEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-
Confidence 10000 000 0011 1233457888999999988532 334433 5788888888888733
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC---ce--eEEeeecccCCcCCEEEEEEEeeEE
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG---HG--ISIGSLAKDLIEEGVQNVTVFKTVF 272 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~nI~i~n~~~ 272 (397)
|-+.... .+-..++|.|...=|-| + |.....++||++... .| -.|-..+.......-..+.|.||++
T Consensus 406 ----DTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~i 477 (588)
T PLN02197 406 ----DTLYVNN-GRQFYRNIVVSGTVDFI-F--GKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRI 477 (588)
T ss_pred ----cceEecC-CCEEEEeeEEEeccccc-c--cceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEE
Confidence 4344433 45678888888654444 2 234588888887531 12 1222222110012345788888888
Q ss_pred eCCcce----EEEEeecCCCCceEEceEEEEEEEec
Q 043588 273 TGTTNG----FRIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 273 ~~~~~g----i~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
.....- ...+.+-++....-..+.|.+..|.+
T Consensus 478 t~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~ 513 (588)
T PLN02197 478 VPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGD 513 (588)
T ss_pred ecCCcccccccccccccCCCCCCCceEEEEecccCC
Confidence 874310 01112212223345567777777764
No 67
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.63 E-value=0.0079 Score=62.46 Aligned_cols=206 Identities=11% Similarity=0.068 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... .--+|+|.+|+|... +.+... |. +++|.++| ++.... .+.
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~Gdg~~~TiIt~~-----------------~~~ 320 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYKEY-VQVNRS-MT-HLVFIGDGPDKTVISGS-----------------KSY 320 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceEEE-EEEcCC-CC-cEEEEecCCCCeEEEcC-----------------Ccc
Confidence 5678999998763322 234799999999864 333211 24 78887775 222100 000
Q ss_pred EEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 043588 124 SIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 124 ~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 197 (397)
-.| +++ +. .-.....+++..+|++|.|... ..+.+. .++...+.+|+|....
T Consensus 321 -~dg~~T~-------------------~S-AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q- 378 (670)
T PLN02217 321 -KDGITTY-------------------KT-ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ- 378 (670)
T ss_pred -CCCCCcc-------------------ce-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-
Confidence 001 111 11 2233457889999999988643 344443 5788999999999743
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-----ceeEEeeecccCCcCCEEEEEEEeeEE
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLIEEGVQNVTVFKTVF 272 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~nI~i~n~~~ 272 (397)
|-+... ..+-..++|.|...=|-|. |.....++||++... ..-.|-..+. .+...-..+.|.||++
T Consensus 379 ----DTLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i 449 (670)
T PLN02217 379 ----DTLYAH-SHRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTI 449 (670)
T ss_pred ----chhccC-CCcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEE
Confidence 334333 3467889999987545542 345789999988642 1122322221 1223456789999999
Q ss_pred eCCcceEE----EEeecCCCCceEEceEEEEEEEec
Q 043588 273 TGTTNGFR----IKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 273 ~~~~~gi~----i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
.....-.. .+.+-++.......+.|.+..|.+
T Consensus 450 ~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~ 485 (670)
T PLN02217 450 VGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPD 485 (670)
T ss_pred ecCccccccccccceeeccCCCCCceEEEEecccCC
Confidence 88532110 111112233445667777777765
No 68
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.62 E-value=0.014 Score=60.29 Aligned_cols=205 Identities=12% Similarity=0.063 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... .--+++|.+|+|... +.+... |. +++|.++| ++..... +.
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~~~TiIt~~~-----------------~~ 355 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDET-VTVDKK-MV-NVTMYGDGSQKTIVTGNK-----------------NF 355 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEEE-EEEcCC-Cc-eEEEEecCCCceEEEECC-----------------cc
Confidence 4678999998763322 235789999999854 444211 24 88888886 2221100 00
Q ss_pred EEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECCCC
Q 043588 124 SIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAPGN 197 (397)
Q Consensus 124 ~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~~~ 197 (397)
..| ++. ...-.....+++..+|++|.|... ..+.+ ..++...+.+|+|.+..|
T Consensus 356 -~~g~~T~--------------------~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD 414 (596)
T PLN02745 356 -ADGVRTF--------------------RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD 414 (596)
T ss_pred -cCCCcce--------------------eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc
Confidence 001 111 112233467888889999988532 33333 357888899999987433
Q ss_pred CCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC------ceeEEeeecccCCcCCEEEEEEEeeE
Q 043588 198 SPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HGISIGSLAKDLIEEGVQNVTVFKTV 271 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~nI~i~n~~ 271 (397)
-+... ..+-..++|.|...=|-| + |.....++||++... .+ .|-..+ +.+...-..+.|.||+
T Consensus 415 -----TLy~~-~~Rqyy~~C~I~GtVDFI-F--G~a~avf~~C~i~~~~~~~~~~~-~iTAq~-r~~~~~~~Gfvf~~c~ 483 (596)
T PLN02745 415 -----TLYAQ-THRQFYRSCVITGTIDFI-F--GDAAAIFQNCLIFVRKPLPNQQN-TVTAQG-RVDKFETTGIVLQNCR 483 (596)
T ss_pred -----ccccC-CCcEEEEeeEEEeeccEE-e--cceeEEEEecEEEEecCCCCCCc-eEEecC-CCCCCCCceEEEEeeE
Confidence 33333 345788888888754544 2 246888888887532 12 221111 1122334678899999
Q ss_pred EeCCcceEE----EEeecCCCCceEEceEEEEEEEec
Q 043588 272 FTGTTNGFR----IKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 272 ~~~~~~gi~----i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
+........ .+.+-++....-..+.|.+..|.+
T Consensus 484 i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~ 520 (596)
T PLN02745 484 IAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIED 520 (596)
T ss_pred EecCccccccccccceeccCCCCCCccEEEEecccCC
Confidence 887532111 111212233345567777777665
No 69
>PLN02314 pectinesterase
Probab=97.58 E-value=0.006 Score=62.90 Aligned_cols=206 Identities=11% Similarity=0.133 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... .--+++|.+|+|... +.+... |. |++|.++| ++... ..+.
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~~~tiIt~-----------------~~~~ 348 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVEN-VLLDKS-KW-NVMIYGDGKDKTIISG-----------------SLNF 348 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEEE-EEecCC-Cc-eEEEEecCCCCcEEEe-----------------cCCc
Confidence 4677999998763322 234799999999853 333211 24 88888876 22210 0000
Q ss_pred EEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECCCCC
Q 043588 124 SIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAPGNS 198 (397)
Q Consensus 124 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~~~~ 198 (397)
.||.. .+ +. .-.....+++..+|++|.|... ..+.+ ..++...+.+|+|.+..
T Consensus 349 ------~~g~~-t~------------~s-aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-- 406 (586)
T PLN02314 349 ------VDGTP-TF------------ST-ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-- 406 (586)
T ss_pred ------CCCCC-cc------------ce-EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc--
Confidence 01110 01 11 2233457788888888887632 23333 35677788888888633
Q ss_pred CCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC------ceeEEeeecccCCcCCEEEEEEEeeEE
Q 043588 199 PNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HGISIGSLAKDLIEEGVQNVTVFKTVF 272 (397)
Q Consensus 199 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~------~gi~igs~~~~~~~~~v~nI~i~n~~~ 272 (397)
|-+.... .+-..++|.|...=|-| + |.....++||.+..- .+ .|-..+ +.+...-..+.|.||++
T Consensus 407 ---DTLy~~~-~rq~y~~C~I~GtvDFI-F--G~a~avf~~c~i~~~~~~~~~~~-~iTA~~-r~~~~~~~G~vf~~c~i 477 (586)
T PLN02314 407 ---DTLYAHS-NRQFYRDCDITGTIDFI-F--GNAAVVFQNCNIQPRQPLPNQFN-TITAQG-KKDPNQNTGISIQRCTI 477 (586)
T ss_pred ---chheeCC-CCEEEEeeEEEecccee-c--cCceeeeeccEEEEecCCCCCCc-eEecCC-CCCCCCCCEEEEEeeEE
Confidence 3343332 34577788887654444 2 245778888877531 12 221111 11223345778888888
Q ss_pred eCCcceEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 273 TGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 273 ~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
..... +....+-++....-..+.|.+..|.+.
T Consensus 478 ~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 478 SAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred ecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 77532 111111121223344566666666653
No 70
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.58 E-value=0.011 Score=60.69 Aligned_cols=207 Identities=13% Similarity=0.081 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHhhcc-CCCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTS-TESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
+-..||+||+++..+ ...-+|+|.||+|... +.+... |. +++|.++| ++... ..+
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E~-V~i~~~-k~-~i~~~G~g~~~tiIt~-----------------~~~- 327 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFEN-VRVEKK-KW-NVVMVGDGMSKTIVSG-----------------SLN- 327 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEEE-EEecCC-CC-eEEEEecCCCCCEEEe-----------------CCc-
Confidence 457899999877432 2335899999999853 444211 24 78888876 22110 000
Q ss_pred EEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECCCCC
Q 043588 124 SIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAPGNS 198 (397)
Q Consensus 124 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~~~~ 198 (397)
..||.. . .+. .-.....+++..++++|.|... ..+.+ ..++...+.+|+|....
T Consensus 328 -----~~dg~~-t------------~~s-aT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-- 386 (565)
T PLN02468 328 -----FVDGTP-T------------FST-ATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-- 386 (565)
T ss_pred -----cCCCCC-c------------cce-eeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc--
Confidence 011110 0 011 1233346788889999887642 23333 35788888899988743
Q ss_pred CCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC-----ceeEEeeecccCCcCCEEEEEEEeeEEe
Q 043588 199 PNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLIEEGVQNVTVFKTVFT 273 (397)
Q Consensus 199 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~v~nI~i~n~~~~ 273 (397)
|-+.... .+-..++|.|...=|-|- |...+.++||.+..- ..-.|-..+ +.+...-..+.|.||++.
T Consensus 387 ---DTLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA~~-r~~~~~~~G~vf~~c~i~ 458 (565)
T PLN02468 387 ---DTLYAHA-QRQFYRECNIYGTVDFIF---GNSAVVFQNCNILPRRPMKGQQNTITAQG-RTDPNQNTGISIQNCTIL 458 (565)
T ss_pred ---chhccCC-CceEEEeeEEecccceee---ccceEEEeccEEEEecCCCCCCceEEecC-CCCCCCCceEEEEccEEe
Confidence 3343333 455688888886545442 346888888887531 111222211 112234567889999888
Q ss_pred CCcceEEEEeecCCCCceEEceEEEEEEEec
Q 043588 274 GTTNGFRIKSWARPSNGFVQGVSFIDAIMRN 304 (397)
Q Consensus 274 ~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~ 304 (397)
.....-..+.+-++....-..+.|.+..|.+
T Consensus 459 ~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~ 489 (565)
T PLN02468 459 PLGDLTSVKTFLGRPWKNYSTTVIMHSMMGS 489 (565)
T ss_pred cCCCccccceeeecCCCCCceEEEEecccCC
Confidence 7532111111112222334456777776665
No 71
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.57 E-value=0.0014 Score=58.45 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=72.5
Q ss_pred EccCCeEEEeeEEecC---------------cceEEEEeceecEEEEeEEEECCCC---CCCCCc-eeee-cceeEEEEe
Q 043588 157 TNSNNIRINGLLSLNS---------------QMFHIVINGCKDVHIEGVTVIAPGN---SPNTDG-IHVQ-LSTNVKITN 216 (397)
Q Consensus 157 ~~~~nv~i~~v~i~~~---------------~~~~i~~~~~~nv~i~n~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n 216 (397)
..++||.|+++++... ...++.+..+++|.|++|++..... ....|| +++. .+.+|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 4788999999998872 3456888999999999999997511 111455 5665 489999999
Q ss_pred cEEecCCceEEeCCC-------CeeEEEEeeEEecCce--eEEeeecccCCcCCEEEEEEEeeEEeC-CcceEEEE
Q 043588 217 CTIKTGDDCIPIGPG-------TKNLWIERVTCGPGHG--ISIGSLAKDLIEEGVQNVTVFKTVFTG-TTNGFRIK 282 (397)
Q Consensus 217 ~~i~~~dD~i~i~~~-------s~nv~i~n~~~~~~~g--i~igs~~~~~~~~~v~nI~i~n~~~~~-~~~gi~i~ 282 (397)
|.|...+.+..+++. ..++++-+|.|....+ -.+. .-.+.+-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r----------~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVR----------FGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEEC----------SCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCccc----------ccEEEEEEeeeECCCCEEEEcc
Confidence 999875444444431 3689999999865321 1221 1247788887755 44565554
No 72
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.55 E-value=0.0084 Score=61.80 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEcCceEEeeceeeeccCCCcceEEEEcc---EEEeeccccccCCCcceEEEecccce
Q 043588 48 STQAFAKAWDAACTST-ESATINVPKGRYLLGSVAFKGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 123 (397)
|-..||+||+++.... .--+|||.+|+|... +.+... |. +++|.++| ++... ..+.
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E~-V~i~~~-k~-ni~l~Gdg~~~TiIt~-----------------~~~~ 345 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYREN-VEVTKK-KK-NIMFLGDGRGKTIITG-----------------SRNV 345 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEEE-EEeCCC-CC-eEEEEecCCCccEEEe-----------------CCcc
Confidence 5678999998773322 234899999999854 333211 24 88888876 22210 0110
Q ss_pred EEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCCC
Q 043588 124 SIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGNS 198 (397)
Q Consensus 124 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 198 (397)
.||.+ . .+. .-.....+++..+|++|.|... ..+.+. .++...+.+|.|....
T Consensus 346 ------~~g~~-t------------~~s-at~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-- 403 (587)
T PLN02313 346 ------VDGST-T------------FHS-ATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-- 403 (587)
T ss_pred ------cCCCC-c------------eee-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc--
Confidence 11110 0 011 2233456788888888887632 233332 5677788888888633
Q ss_pred CCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecC---ce--eEEeeecccCCcCCEEEEEEEeeEEe
Q 043588 199 PNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG---HG--ISIGSLAKDLIEEGVQNVTVFKTVFT 273 (397)
Q Consensus 199 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~v~nI~i~n~~~~ 273 (397)
|-+.... .+-..++|.|...=|-|- |...+.++||.+..- .| -.|-..+ +.+...-..+.|.||++.
T Consensus 404 ---DTLy~~~-~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTAqg-r~~~~~~tG~v~~~c~i~ 475 (587)
T PLN02313 404 ---DTLYVHS-NRQFFVKCHITGTVDFIF---GNAAAVLQDCDINARRPNSGQKNMVTAQG-RSDPNQNTGIVIQNCRIG 475 (587)
T ss_pred ---chhccCC-CcEEEEeeEEeeccceec---cceeEEEEccEEEEecCCCCCcceEEecC-CCCCCCCceEEEEecEEe
Confidence 3333332 345777888876545442 345777888877531 11 1222211 112233457778888887
Q ss_pred CCc
Q 043588 274 GTT 276 (397)
Q Consensus 274 ~~~ 276 (397)
...
T Consensus 476 ~~~ 478 (587)
T PLN02313 476 GTS 478 (587)
T ss_pred cCC
Confidence 653
No 73
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0048 Score=57.70 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=63.6
Q ss_pred EEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEEC
Q 043588 115 LSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIA 194 (397)
Q Consensus 115 i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~ 194 (397)
+...+..++.|.|-++.|... .....|...|.+.++++.+|.+-.+.- ...+|..+.++...+++.+++.
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~---------~r~~~rGnGI~vyNa~~a~V~~ndisy-~rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLAD---------LRVAERGNGIYVYNAPGALVVGNDISY-GRDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred EEEeccCceEEEeeEEeeccc---------cchhhccCceEEEcCCCcEEEcCcccc-ccceEEEcccccceecccchhh
Confidence 445566777777755554432 112334556777777777776655522 2345666666666666666554
Q ss_pred CCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEec
Q 043588 195 PGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGP 244 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~ 244 (397)
..-|.|...+.+..++++..+...-+.++.- +++++|+|+.-.+
T Consensus 193 -----~RygvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS~G 236 (408)
T COG3420 193 -----LRYGVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNRSSG 236 (408)
T ss_pred -----eeeeEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCcccC
Confidence 2235555555666666555555444555443 5566666665443
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.16 E-value=0.084 Score=51.05 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=87.4
Q ss_pred EeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCc-eEEe-eceeeeccCCCcceEEEEcc-EEEeec-cccccC
Q 043588 34 NVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKG-RYLL-GSVAFKGDCKSSDITFRIDG-TLVAPA-DYRVLG 109 (397)
Q Consensus 34 ~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~-~~~~l~~~~~s~~~~l~~~G-~l~~~~-~~~~~~ 109 (397)
.|+.|=..|+. | +.+||+.- ++|++-|| +|.+ .++.++ + ..+|.+.| ++.... ++..
T Consensus 45 qvkt~~~~P~e---D---le~~I~~h------aKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnGA~V~v~~~~~~~-- 105 (386)
T PF01696_consen 45 QVKTYWMEPGE---D---LEEAIRQH------AKVALRPGAVYVIRKPVNIR----S-CCYIIGNGATVRVNGPDRVA-- 105 (386)
T ss_pred eEEEEEcCCCc---C---HHHHHHhc------CEEEeCCCCEEEEeeeEEec----c-eEEEECCCEEEEEeCCCCce--
Confidence 55566666643 3 66777543 46888777 6987 478887 5 78888887 443321 1100
Q ss_pred CCcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCc-ceEEEEeceecEEEE
Q 043588 110 QADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQ-MFHIVINGCKDVHIE 188 (397)
Q Consensus 110 ~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~-~~~i~~~~~~nv~i~ 188 (397)
+.... + ...| .+.+-.+|++.|+.+...+ ..++-+....++++-
T Consensus 106 -----f~v~~---------------~------------~~~P---~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~h 150 (386)
T PF01696_consen 106 -----FRVCM---------------Q------------SMGP---GVVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFH 150 (386)
T ss_pred -----EEEEc---------------C------------CCCC---eEeeeeeeEEEEEEEecCCccceeEEEecceEEEE
Confidence 11110 0 0012 1223346677777776655 556666666777777
Q ss_pred eEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCc-ee
Q 043588 189 GVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH-GI 248 (397)
Q Consensus 189 n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~-gi 248 (397)
+|.+.+. . |..+.......|++|+|....-||.-. +...+.|++|.|+... |+
T Consensus 151 gC~F~gf----~--g~cl~~~~~~~VrGC~F~~C~~gi~~~-~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 151 GCSFFGF----H--GTCLESWAGGEVRGCTFYGCWKGIVSR-GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred eeEEecC----c--ceeEEEcCCcEEeeeEEEEEEEEeecC-CcceEEeeheeeeheEEEE
Confidence 7777762 2 233333456777777776655555333 3556777777776542 44
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.078 Score=49.56 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHhhccCC--CcEEEEcCceEEeeceeeeccCCCcceEEEEcc
Q 043588 47 DSTQAFAKAWDAACTSTE--SATINVPKGRYLLGSVAFKGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 97 (397)
++...||+|+++|..+.+ -..+.+.+|.|.- .+.+...- . .++|++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~~~-~-~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPAAP-G-GITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecCCC-C-ceeEEecC
Confidence 677889999998743333 3455668999963 23443210 1 38888764
No 76
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.07 E-value=0.00086 Score=46.21 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=23.1
Q ss_pred ccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeee
Q 043588 40 AKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFK 83 (397)
Q Consensus 40 A~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~ 83 (397)
|+|||+||||+||.+||++. +.|..+--..=||.+.++.-.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lPd~ 41 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLPDI 41 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS---G
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCccH
Confidence 78999999999999999754 444444444448998876433
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.97 E-value=0.35 Score=43.13 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=30.4
Q ss_pred cEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEec-CCceEEeCCCCeeEEEEeeEEecC
Q 043588 184 DVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT-GDDCIPIGPGTKNLWIERVTCGPG 245 (397)
Q Consensus 184 nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~s~nv~i~n~~~~~~ 245 (397)
..+++|+.|-. +..||||..+ +-+|+|+.+.. +.|++.++..+..++|.+.-...+
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A 118 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNA 118 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCC
Confidence 34555555533 3456666665 55666666665 667777766444555555544443
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.71 E-value=1.2 Score=39.78 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=84.2
Q ss_pred cCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCCCCCCCceeeecce-eEEEEecEEecCCceEEeCCCCeeEEE
Q 043588 159 SNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLST-NVKITNCTIKTGDDCIPIGPGTKNLWI 237 (397)
Q Consensus 159 ~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~~s~nv~i 237 (397)
-+..+++++.|-.+...+||... +.+|+|+..+.- ..|++.+.+.. .++|.+.-.++.+|=+-=..+...+.|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I 133 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTI 133 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEE
Confidence 36789999999767778999998 789999999973 56889998876 899999999887666544445667888
Q ss_pred EeeEEecCceeEEeeecccCCc-CCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEE
Q 043588 238 ERVTCGPGHGISIGSLAKDLIE-EGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFID 299 (397)
Q Consensus 238 ~n~~~~~~~gi~igs~~~~~~~-~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~n 299 (397)
+|.+... .|--+-|.|.-... +.-+++.+++........-..|...++ +...|+++.+..
T Consensus 134 ~nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 134 KNFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp EEEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred EeEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 8865442 34333344322221 234567777665543322234555555 555666655554
No 79
>PLN02480 Probable pectinesterase
Probab=95.28 E-value=0.68 Score=44.63 Aligned_cols=113 Identities=9% Similarity=0.070 Sum_probs=77.4
Q ss_pred EeceecEEEEeEEEECCCC-----CCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEee
Q 043588 179 INGCKDVHIEGVTVIAPGN-----SPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGS 252 (397)
Q Consensus 179 ~~~~~nv~i~n~~i~~~~~-----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs 252 (397)
....++++++|++|.|... .....++.+. .+.++.++||.|....|-+-.. ...-.++||++.+.-++-+|.
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~--~gR~yf~~C~IeG~VDFIFG~ 205 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY--KGRHYYHSCYIQGSIDFIFGR 205 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeC--CCCEEEEeCEEEeeeeEEccc
Confidence 3356889999999999632 1123466663 4789999999999988877544 357899999999877777765
Q ss_pred ecccCCcCCEEEEEEEeeEEeCCc------ceEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 253 LAKDLIEEGVQNVTVFKTVFTGTT------NGFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 253 ~~~~~~~~~v~nI~i~n~~~~~~~------~gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
. ...|+||++.... .|. |..+.. ....-....|.|+++...
T Consensus 206 g----------~a~fe~C~i~s~~~~~~~~~G~-ITA~~r-~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 G----------RSIFHNCEIFVIADRRVKIYGS-ITAHNR-ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred e----------eEEEEccEEEEecCCCCCCceE-EEcCCC-CCCCCCEEEEECCEEccc
Confidence 2 5789999998642 132 332211 112234578999999863
No 80
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=95.00 E-value=1.4 Score=40.31 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=75.6
Q ss_pred EEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEec-CCceEEeCCCCeeEEEEeeEEecCceeEEeeec
Q 043588 176 HIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT-GDDCIPIGPGTKNLWIERVTCGPGHGISIGSLA 254 (397)
Q Consensus 176 ~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~ 254 (397)
.+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.+ ..+ |+.+-...
T Consensus 90 n~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~----------------------GI~v~g~~ 145 (246)
T PF07602_consen 90 NVTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGRE----------------------GIFVTGTS 145 (246)
T ss_pred eEEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccc----------------------cEEEEeee
Confidence 3445556778888888888521 12335666554 56666666554 223 33331110
Q ss_pred ccCCcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCC-CccceEEEe
Q 043588 255 KDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPG-QVSGVKIND 333 (397)
Q Consensus 255 ~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~~i~n 333 (397)
....+.+++|+++.+.....|+.+..... + +. ..++|..+++...+|.+.... +....... .+..-.+++
T Consensus 146 ---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~-n~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~~ 216 (246)
T PF07602_consen 146 ---ANPGINGNVISGNSIYFNKTGISISDNAA---P-VE-NKIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFRN 216 (246)
T ss_pred ---cCCcccceEeecceEEecCcCeEEEcccC---C-cc-ceeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEec
Confidence 12467788899999998888998864422 2 22 244777777666677655332 21111011 122346777
Q ss_pred EEEEeEEEee
Q 043588 334 ITYQDIRGTS 343 (397)
Q Consensus 334 I~f~ni~~~~ 343 (397)
-...++....
T Consensus 217 N~~~Dl~~~~ 226 (246)
T PF07602_consen 217 NGRYDLNNSA 226 (246)
T ss_pred CcceeeEecc
Confidence 7777777643
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=94.75 E-value=4.4 Score=39.44 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=62.9
Q ss_pred eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEec-CCceEEeCCCCeeEEEEeeEEecCc-eeEEeeecccC
Q 043588 180 NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKT-GDDCIPIGPGTKNLWIERVTCGPGH-GISIGSLAKDL 257 (397)
Q Consensus 180 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~s~nv~i~n~~~~~~~-gi~igs~~~~~ 257 (397)
..=.+|++.|+++...+ ...|+-+....++++.+|.|.+ ...|+..+. ...|+.|+|.+.+ |+.-
T Consensus 118 ~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~~------- 184 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIVS------- 184 (386)
T ss_pred eeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEeec-------
Confidence 34478999999999853 3457888888999999999987 344555544 7889999997653 5532
Q ss_pred CcCCEEEEEEEeeEEeCCcceE
Q 043588 258 IEEGVQNVTVFKTVFTGTTNGF 279 (397)
Q Consensus 258 ~~~~v~nI~i~n~~~~~~~~gi 279 (397)
.....+.|++|.|+...-|+
T Consensus 185 --~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 --RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred --CCcceEEeeheeeeheEEEE
Confidence 34467888999999875555
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.04 E-value=0.079 Score=34.56 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=18.2
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEe
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIK 220 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 220 (397)
|.+..+.+.+|++.++.. +.+||++..+++-+|+++++.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 344444444455555543 334555554444444444443
No 83
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=93.95 E-value=2.6 Score=41.71 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=60.7
Q ss_pred eceecEEEEeEEEECCCC----CCCCCceeee-cceeEEEEecEEecCCceEEeCCC----------CeeEEEEeeEEec
Q 043588 180 NGCKDVHIEGVTVIAPGN----SPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPG----------TKNLWIERVTCGP 244 (397)
Q Consensus 180 ~~~~nv~i~n~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~----------s~nv~i~n~~~~~ 244 (397)
...+++..+|++|.|... ......+.+. ....+.+.+|.|....|-+-..+. ...-.++||++.+
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 345556666666665421 1112233332 246777777777776666655320 2257778888777
Q ss_pred CceeEEeeecccCCcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 245 GHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 245 ~~gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
.-++-+|.. ...|+||++..... .-.|... ......-....|.|+++...
T Consensus 283 ~VDFIFG~g----------~AvFenC~I~s~~~~~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 283 DVDFVFGRG----------AVVFDNTEFRVVNSRTQQEAYVFAP-ATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred cccEEccCc----------eEEEEcCEEEEecCCCCCceEEEec-CCCCCCCCEEEEECCEEecC
Confidence 666656542 46677777765321 1122211 11112223467888888763
No 84
>PLN02773 pectinesterase
Probab=93.89 E-value=2.7 Score=40.13 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=39.7
Q ss_pred EEEccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeC
Q 043588 155 RFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIG 229 (397)
Q Consensus 155 ~~~~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 229 (397)
....++++..++++|.|... ..+.+ ..++.+.+.+|+|.... |-+.... .+-.++||.|...=|-|- +
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~Q-----DTL~~~~-gr~yf~~c~IeG~VDFIF-G 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQ-----DTLYLHY-GKQYLRDCYIEGSVDFIF-G 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeeccc-----ceeEeCC-CCEEEEeeEEeecccEEe-e
Confidence 34456777777777777632 12222 23455666666666522 2232221 245556666654433331 2
Q ss_pred CCCeeEEEEeeEEe
Q 043588 230 PGTKNLWIERVTCG 243 (397)
Q Consensus 230 ~~s~nv~i~n~~~~ 243 (397)
.....+++|++.
T Consensus 170 --~g~a~Fe~c~i~ 181 (317)
T PLN02773 170 --NSTALLEHCHIH 181 (317)
T ss_pred --ccEEEEEeeEEE
Confidence 234566666654
No 85
>PLN02671 pectinesterase
Probab=93.82 E-value=3.9 Score=39.63 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=10.7
Q ss_pred EEEccCCeEEEeeEEecC
Q 043588 155 RFTNSNNIRINGLLSLNS 172 (397)
Q Consensus 155 ~~~~~~nv~i~~v~i~~~ 172 (397)
.....+++..+|++|.|.
T Consensus 149 v~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 149 VTIESDYFCATGITFENT 166 (359)
T ss_pred EEEECCceEEEeeEEEcC
Confidence 334456666666666665
No 86
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=93.80 E-value=2.7 Score=43.45 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=78.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccC
Q 043588 179 INGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|.|.........+.+. .+.+..+.+|.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a---- 414 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGNS---- 414 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeeccc----
Confidence 34568899999999986543334555554 46889999999999888776554 456799999998888777653
Q ss_pred CcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 258 IEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 258 ~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 415 ------~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 415 ------AVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ------eEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 57899999965311 11233221112233346889999998653
No 87
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.49 E-value=0.13 Score=33.57 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=30.5
Q ss_pred ceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEec
Q 043588 203 GIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGP 244 (397)
Q Consensus 203 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~ 244 (397)
||.++.+.+.+|+++.+....+||.+.. +++.+++++++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEEc
Confidence 5777777777888888888777888776 5677777776643
No 88
>PLN02176 putative pectinesterase
Probab=93.34 E-value=2.6 Score=40.56 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=75.7
Q ss_pred eceecEEEEeEEEECCCCC------CCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEee
Q 043588 180 NGCKDVHIEGVTVIAPGNS------PNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGS 252 (397)
Q Consensus 180 ~~~~nv~i~n~~i~~~~~~------~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs 252 (397)
..++++..+|++|.|.... .....+.+. ...+..+.+|.|....|-+-.. ...-.++||++.+.-++-+|.
T Consensus 119 v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~--~gRqyf~~CyIeG~VDFIFG~ 196 (340)
T PLN02176 119 SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG--KGRHYYKRCVISGGIDFIFGY 196 (340)
T ss_pred EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC--CcCEEEEecEEEecccEEecC
Confidence 3578899999999986421 122344443 3688999999999988877654 357899999999887777765
Q ss_pred ecccCCcCCEEEEEEEeeEEeCCc--------ceEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 253 LAKDLIEEGVQNVTVFKTVFTGTT--------NGFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 253 ~~~~~~~~~v~nI~i~n~~~~~~~--------~gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
. ...|+||++.... .| .|..........-....|.|+++...
T Consensus 197 a----------~a~Fe~C~I~s~~~~~~~~~~~g-~ITA~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 197 A----------QSIFEGCTLKLTLGIYPPNEPYG-TITAQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred c----------eEEEeccEEEEecccCCCCCCcE-EEEeCCCCCCCCCcEEEEECCEEccC
Confidence 2 5789999997431 12 23222111112223578999999864
No 89
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=93.07 E-value=1.4 Score=44.79 Aligned_cols=77 Identities=10% Similarity=-0.002 Sum_probs=34.2
Q ss_pred ccCCeEEEeeEEecCcc----eEEEE-eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCC
Q 043588 158 NSNNIRINGLLSLNSQM----FHIVI-NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGT 232 (397)
Q Consensus 158 ~~~nv~i~~v~i~~~~~----~~i~~-~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s 232 (397)
..+++..+|++|.|... ..+.+ ..++...+.+|+|.... |-+.... .+-..++|.|...=|-|- + .
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFIF-G--~ 338 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFIF-G--N 338 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceEe-c--c
Confidence 45666666666665532 12222 13455555555555422 2222222 233455555554333321 1 2
Q ss_pred eeEEEEeeEEe
Q 043588 233 KNLWIERVTCG 243 (397)
Q Consensus 233 ~nv~i~n~~~~ 243 (397)
....++||++.
T Consensus 339 a~avf~~C~i~ 349 (497)
T PLN02698 339 AAAVFQNCYLF 349 (497)
T ss_pred cceeecccEEE
Confidence 34555555553
No 90
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=93.07 E-value=2.1 Score=44.46 Aligned_cols=117 Identities=6% Similarity=0.043 Sum_probs=79.4
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeeccc
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|.|.........+.+. .+.+..+.+|.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 367 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 441 (596)
T PLN02745 367 FVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGDA--- 441 (596)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecce---
Confidence 334678899999999986432233445554 36899999999999888776554 467999999998877777653
Q ss_pred CCcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 257 LIEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 442 -------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 442 -------AAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred -------eEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 67899999875311 11333221111223356889999998743
No 91
>PLN02197 pectinesterase
Probab=91.40 E-value=2.9 Score=43.33 Aligned_cols=116 Identities=7% Similarity=0.089 Sum_probs=78.9
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeeccc
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+...+ ..-.++||++.+.-++-+|..
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 433 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS--- 433 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce---
Confidence 344678899999999986532334556554 36889999999999888877665 456999999998877767653
Q ss_pred CCcCCEEEEEEEeeEEeCCc--ce--EEEEeecCCC--CceEEceEEEEEEEecCc
Q 043588 257 LIEEGVQNVTVFKTVFTGTT--NG--FRIKSWARPS--NGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~nI~i~n~~~~~~~--~g--i~i~~~~~~~--~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-.. .| -.|. .++.. ...-..+.|.|+++....
T Consensus 434 -------~avfq~C~i~~r~~~~~~~~~iT-Aqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 -------ATVIQNSLIVVRKGSKGQYNTVT-ADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -------eeeeecCEEEEecCCCCCceeEE-CCCCCCCCCCCcEEEEEccEEecCC
Confidence 4789999986421 11 1232 22211 123346889999998743
No 92
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=90.26 E-value=7.5 Score=40.95 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=79.9
Q ss_pred EeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccC
Q 043588 179 INGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|.........+.+. .+.+..+.||.|....|-+...+ ..-.+++|++.+.-++-+|..
T Consensus 333 ~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 406 (670)
T PLN02217 333 AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGDA---- 406 (670)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecCc----
Confidence 34578899999999986543344556554 36889999999999888776554 467999999998877777652
Q ss_pred CcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 258 IEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 258 ~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 407 ------~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 407 ------AAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ------eEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCc
Confidence 5789999997531 112343221111223345889999998753
No 93
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=90.00 E-value=3.3 Score=39.24 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=37.2
Q ss_pred EEccCCeEEEeeEEecCcc----eEEE-EeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCC
Q 043588 156 FTNSNNIRINGLLSLNSQM----FHIV-INGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGP 230 (397)
Q Consensus 156 ~~~~~nv~i~~v~i~~~~~----~~i~-~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~ 230 (397)
....+++.+++++|.|... ..+. ...++.+.+.+|+|.+. .|-+.... .+..++||.|...-|-|- +
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~-----QDTL~~~~-~r~y~~~c~IeG~vDFIf-G- 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGY-----QDTLYANG-GRQYFKNCYIEGNVDFIF-G- 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-S-----TT-EEE-S-SEEEEES-EEEESEEEEE-E-
T ss_pred cccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccc-----cceeeecc-ceeEEEeeEEEecCcEEE-C-
Confidence 3457788888888877532 1111 12445566666666652 23343332 345566666665544442 2
Q ss_pred CCeeEEEEeeEEe
Q 043588 231 GTKNLWIERVTCG 243 (397)
Q Consensus 231 ~s~nv~i~n~~~~ 243 (397)
.....+++|++.
T Consensus 155 -~~~a~f~~c~i~ 166 (298)
T PF01095_consen 155 -NGTAVFENCTIH 166 (298)
T ss_dssp -SSEEEEES-EEE
T ss_pred -CeeEEeeeeEEE
Confidence 235556666654
No 94
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=88.99 E-value=15 Score=37.57 Aligned_cols=118 Identities=9% Similarity=0.105 Sum_probs=80.1
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a-- 382 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGNS-- 382 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceecccc--
Confidence 3445678899999999986542334455554 36889999999999888876654 456889999998878777652
Q ss_pred cCCcCCEEEEEEEeeEEeCCcc---eEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 256 DLIEEGVQNVTVFKTVFTGTTN---GFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~~---gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+..... .-.|..........-..+.|.|+++....
T Consensus 383 --------~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 383 --------AVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred --------eEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 57899999876421 12343221111222345789999998743
No 95
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=88.69 E-value=4.9 Score=34.78 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=13.0
Q ss_pred ecEEEEeEEEECCCCCCCCCceeeec
Q 043588 183 KDVHIEGVTVIAPGNSPNTDGIHVQL 208 (397)
Q Consensus 183 ~nv~i~n~~i~~~~~~~~~DGi~~~~ 208 (397)
+||.|.|..|.+ ...-||.+.+
T Consensus 2 ~dIEIYnN~I~~----T~g~GIWl~g 23 (198)
T PF08480_consen 2 DDIEIYNNTIYN----TYGPGIWLFG 23 (198)
T ss_pred CceEEecceeec----ccCceEEEEe
Confidence 356677777776 3445666543
No 96
>PLN02916 pectinesterase family protein
Probab=87.86 E-value=21 Score=36.29 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=80.9
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 271 T~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a-- 346 (502)
T PLN02916 271 TFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGDA-- 346 (502)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccCc--
Confidence 3345667899999999986543344555554 36889999999999888887665 356899999998888777653
Q ss_pred cCCcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 256 DLIEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 347 --------~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 347 --------AVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred --------eEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 5788999986532 112343221111223346889999998753
No 97
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=87.73 E-value=30 Score=34.08 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=13.5
Q ss_pred EEEEeEEEEeCCCccceeeeccccccc
Q 043588 362 IKLQNINLRHLKQVAQSSCNNVIGKAL 388 (397)
Q Consensus 362 i~~~ni~i~~~~~~~~~~c~nv~~~~~ 388 (397)
=++.||+.. ..+..+.|.|+.....
T Consensus 408 StvS~i~~~--v~~~ri~~~ni~d~~l 432 (549)
T PF09251_consen 408 STVSGITGN--VPPSRINVGNIADPVL 432 (549)
T ss_dssp EEEEEEECS--TTGGGEEEEEEEETTE
T ss_pred Ceeecceec--cChhheeEeeeccccc
Confidence 344555442 2345677777665544
No 98
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=87.56 E-value=3.4 Score=38.32 Aligned_cols=77 Identities=26% Similarity=0.273 Sum_probs=38.7
Q ss_pred eeeecceeEEEEecEEecC--C---------ceEEeCCCCeeEEEEeeEEecCceeEEeee---cccCCcCCEEEEEEEe
Q 043588 204 IHVQLSTNVKITNCTIKTG--D---------DCIPIGPGTKNLWIERVTCGPGHGISIGSL---AKDLIEEGVQNVTVFK 269 (397)
Q Consensus 204 i~~~~s~nv~I~n~~i~~~--d---------D~i~i~~~s~nv~i~n~~~~~~~gi~igs~---~~~~~~~~v~nI~i~n 269 (397)
+++.+.++..|+|.+-.+- | .-+++.. +.|..|.|..+.++.|+-||-. |.+. .-..|....|
T Consensus 262 vhvengkhfvirnvkaknitpdfskkagidnatvaiyg-cdnfvidni~mvnsagmligygvikg~yl--sipqnfkln~ 338 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYG-CDNFVIDNIEMINSAGMLIGYGVIKGKYL--SIPQNFKLNN 338 (464)
T ss_pred EEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEc-ccceEEeccccccccccEEEeeeeeccEe--cccccceece
Confidence 4555555555555554431 1 1223333 6777777777777666555432 1111 1124555555
Q ss_pred eEEeCCc-----ceEEEEe
Q 043588 270 TVFTGTT-----NGFRIKS 283 (397)
Q Consensus 270 ~~~~~~~-----~gi~i~~ 283 (397)
+.+.++. +|+.|.+
T Consensus 339 i~ldn~~l~yklrgiqiss 357 (464)
T PRK10123 339 IQLDNTHLAYKLRGIQISA 357 (464)
T ss_pred EeecccccceeeeeeEecc
Confidence 5555543 5666643
No 99
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=87.24 E-value=14 Score=37.98 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=80.0
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|+|.........+.+. .+.++.+.+|.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 313 T~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~a-- 388 (537)
T PLN02506 313 TVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGNG-- 388 (537)
T ss_pred EEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccCc--
Confidence 3455778999999999986543334455554 36899999999999888876554 456999999998888777653
Q ss_pred cCCcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 256 DLIEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
...|+||.+.-... .-.|..........-..+.|.|+++...
T Consensus 389 --------~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 389 --------AAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred --------eeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 57899999975321 1233322111112234578999999863
No 100
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=87.14 E-value=18 Score=37.23 Aligned_cols=116 Identities=9% Similarity=0.058 Sum_probs=79.5
Q ss_pred EeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccC
Q 043588 179 INGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 308 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 381 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGNA---- 381 (539)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEeccc----
Confidence 34678899999999986532334555554 36889999999999888776554 456999999998878777653
Q ss_pred CcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 258 IEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 258 ~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||++..... .-.|..........-..+.|.|+++....
T Consensus 382 ------~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 382 ------AAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ------ceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCC
Confidence 57789998875321 11333221111223456889999998743
No 101
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=86.99 E-value=24 Score=36.16 Aligned_cols=117 Identities=8% Similarity=0.035 Sum_probs=80.1
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 287 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a-- 362 (520)
T PLN02201 287 TFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGDA-- 362 (520)
T ss_pred EEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecCc--
Confidence 3345678899999999986543344555554 36889999999999888877665 356889999998888777653
Q ss_pred cCCcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 256 DLIEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
...|+||.+.... ..-.|..........-..+.|.|+++...
T Consensus 363 --------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 363 --------TAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred --------eEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 5789999997531 11233322111222334578999999764
No 102
>PLN02314 pectinesterase
Probab=86.79 E-value=16 Score=38.03 Aligned_cols=118 Identities=8% Similarity=0.061 Sum_probs=80.4
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 359 T~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a-- 434 (586)
T PLN02314 359 TFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGNA-- 434 (586)
T ss_pred EEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccCc--
Confidence 3445678899999999986533334455554 36889999999999888876655 356999999998888777653
Q ss_pred cCCcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 256 DLIEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 435 --------~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 435 --------AVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred --------eeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 5789999997531 111233221111233446789999998754
No 103
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=86.75 E-value=18 Score=36.82 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=78.0
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeeccc
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|.........+.+. .+.+..+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~a--- 339 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGNA--- 339 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEeccc---
Confidence 344668899999999986532233455554 36889999999999888877665 346999999998878777652
Q ss_pred CCcCCEEEEEEEeeEEeCCcc--e--EEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 257 LIEEGVQNVTVFKTVFTGTTN--G--FRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~nI~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||++..... + -.|..........-..+.|.|+++....
T Consensus 340 -------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 340 -------AAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -------ceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 46788998874321 1 1232221112223345889999998653
No 104
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=86.39 E-value=17 Score=35.74 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=16.6
Q ss_pred eeEEEEeeEEecCceeEEeeecccCCcCCEEEEEEEee
Q 043588 233 KNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKT 270 (397)
Q Consensus 233 ~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~nI~i~n~ 270 (397)
.|-.|+|....++.|+-++-.| ..+.++||++++|
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~ 345 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDC 345 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeecc
Confidence 4556666666666665554432 2345666666665
No 105
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=86.31 E-value=20 Score=37.18 Aligned_cols=116 Identities=8% Similarity=0.044 Sum_probs=79.9
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeeccc
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|.|........++.+. .+....+.+|.|....|-+-..+ ..-.+++|++++.-++-+|..
T Consensus 335 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 409 (566)
T PLN02713 335 FAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGNA--- 409 (566)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceecccc---
Confidence 334568999999999996543344556554 36889999999999888887665 456999999998878777653
Q ss_pred CCcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 257 LIEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 257 ~~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
...|+||.+.... ..-.|..........-..+.|.|+++...
T Consensus 410 -------~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 410 -------AVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred -------eEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 5789999997531 11123322111222334678999999864
No 106
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=86.15 E-value=21 Score=36.92 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=79.7
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeeccc
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 392 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGNA--- 392 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceecccc---
Confidence 344668899999999986532234455554 36889999999999888877665 346999999998888777653
Q ss_pred CCcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 257 LIEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 393 -------~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 393 -------AVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred -------eeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCc
Confidence 57899999875321 11233221112223446889999998653
No 107
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=85.88 E-value=3 Score=41.21 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=10.4
Q ss_pred eEEceEEEEEEEecCcccEEEe
Q 043588 291 FVQGVSFIDAIMRNVQFPIVID 312 (397)
Q Consensus 291 ~i~ni~~~ni~~~~~~~~i~i~ 312 (397)
.+.|+.+.+.++-++..+|.+.
T Consensus 308 qv~nv~I~~NT~In~~~~i~~g 329 (425)
T PF14592_consen 308 QVKNVLIANNTFINCKSPIHFG 329 (425)
T ss_dssp --BSEEEES-EEES-SEEEESS
T ss_pred ccceeEEecceEEccCCceEEc
Confidence 3566666666666655555543
No 108
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=85.72 E-value=30 Score=35.56 Aligned_cols=117 Identities=9% Similarity=0.108 Sum_probs=78.8
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|.|.........+.+. .+.+..+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 299 T~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~a-- 374 (530)
T PLN02933 299 TVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGNA-- 374 (530)
T ss_pred EEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccCc--
Confidence 3445678899999999986543334556654 36889999999999888776554 356999999998878777653
Q ss_pred cCCcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 256 DLIEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++...
T Consensus 375 --------~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 375 --------AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred --------eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 4778888886432 11223322111112234578999999864
No 109
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=85.48 E-value=22 Score=36.65 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=78.2
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeeccc
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|.........+.+. .+.++.+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 386 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGNA--- 386 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeeccc---
Confidence 344578999999999986543344555554 36889999999999888776554 456999999998877777653
Q ss_pred CCcCCEEEEEEEeeEEeCCcc--e--EEEEeecCCCCceEEceEEEEEEEecC
Q 043588 257 LIEEGVQNVTVFKTVFTGTTN--G--FRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 257 ~~~~~v~nI~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
...|+||++.-... | -.|..........-..+.|.|+++...
T Consensus 387 -------~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 387 -------AVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred -------eEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 57788888865321 1 123222111112234678999999754
No 110
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=85.21 E-value=36 Score=34.66 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=80.5
Q ss_pred EeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccC
Q 043588 179 INGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|.........+.+. .+....+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 280 ~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~a---- 353 (509)
T PLN02488 280 ASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGNA---- 353 (509)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecce----
Confidence 34567899999999986543334556654 36889999999999888876554 467999999998888777653
Q ss_pred CcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 258 IEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 258 ~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+..... .-.|..........-..+.|.|+++....
T Consensus 354 ------~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 354 ------AAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ------EEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 68899999975321 11343321111223345889999998754
No 111
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=84.85 E-value=30 Score=36.10 Aligned_cols=118 Identities=8% Similarity=0.058 Sum_probs=80.2
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|.|.........+.+. .+.+..+.||.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 354 T~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a-- 429 (587)
T PLN02484 354 SFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGNA-- 429 (587)
T ss_pred EEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceecccc--
Confidence 3445678899999999986543334555554 36889999999999888776554 456999999998878777653
Q ss_pred cCCcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 256 DLIEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 430 --------~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 430 --------AVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred --------eeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCC
Confidence 5789999997531 112333221111223346889999998643
No 112
>PLN02682 pectinesterase family protein
Probab=84.72 E-value=33 Score=33.54 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=40.5
Q ss_pred EEEEccCCeEEEeeEEecCcc---------eEEEE-eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCC
Q 043588 154 LRFTNSNNIRINGLLSLNSQM---------FHIVI-NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGD 223 (397)
Q Consensus 154 i~~~~~~nv~i~~v~i~~~~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d 223 (397)
-.....+++..+|++|.|... ..+.+ ...+...+.+|+|.... |-+... ..+-..+||.|...=
T Consensus 157 T~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~V 230 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQ-----DTLYDH-LGRHYFKDCYIEGSV 230 (369)
T ss_pred EEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccc-----cceEEC-CCCEEEEeeEEcccc
Confidence 344556778888888877531 12222 23555666666666532 222221 234555666665443
Q ss_pred ceEEeCCCCeeEEEEeeEEe
Q 043588 224 DCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 224 D~i~i~~~s~nv~i~n~~~~ 243 (397)
|-| + |.....+++|++.
T Consensus 231 DFI-F--G~g~a~Fe~C~I~ 247 (369)
T PLN02682 231 DFI-F--GNGLSLYEGCHLH 247 (369)
T ss_pred cEE-e--cCceEEEEccEEE
Confidence 333 1 1235566666554
No 113
>PLN02432 putative pectinesterase
Probab=84.56 E-value=34 Score=32.33 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=19.1
Q ss_pred EccCCeEEEeeEEecCcc---eEEEE-eceecEEEEeEEEEC
Q 043588 157 TNSNNIRINGLLSLNSQM---FHIVI-NGCKDVHIEGVTVIA 194 (397)
Q Consensus 157 ~~~~nv~i~~v~i~~~~~---~~i~~-~~~~nv~i~n~~i~~ 194 (397)
...+++..+|++|.|... ..+.+ ...+...+.+|+|..
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G 132 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILS 132 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEec
Confidence 345667777777766521 11211 134455555555554
No 114
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=83.65 E-value=8.1 Score=33.52 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=33.1
Q ss_pred eeEEEEecEEec-CCceEEe-C-------CCCeeEEEEeeEEecCc---ee--EEeeecccCCcCCEEEEEEEeeEEeCC
Q 043588 210 TNVKITNCTIKT-GDDCIPI-G-------PGTKNLWIERVTCGPGH---GI--SIGSLAKDLIEEGVQNVTVFKTVFTGT 275 (397)
Q Consensus 210 ~nv~I~n~~i~~-~dD~i~i-~-------~~s~nv~i~n~~~~~~~---gi--~igs~~~~~~~~~v~nI~i~n~~~~~~ 275 (397)
.+|.|.|+.|.+ .--+|=+ + ...+||.|.++.|+.+. .+ .-|-. ..+..|..|||++|.+.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv-----~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIV-----TSGFYNTLIENNVFDGV 76 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEE-----eccccccEEEeeeeccc
Confidence 356777777765 2222222 1 12457778777776421 11 11111 23456777778877776
Q ss_pred cc
Q 043588 276 TN 277 (397)
Q Consensus 276 ~~ 277 (397)
.+
T Consensus 77 y~ 78 (198)
T PF08480_consen 77 YH 78 (198)
T ss_pred cc
Confidence 43
No 115
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=82.63 E-value=48 Score=34.24 Aligned_cols=117 Identities=8% Similarity=0.070 Sum_probs=80.6
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecc
Q 043588 177 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.++||++.+.-++-+|..
T Consensus 307 T~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~a-- 382 (538)
T PLN03043 307 TFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGNA-- 382 (538)
T ss_pred EEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeecc--
Confidence 3445668999999999996543344556554 36789999999999888776654 457999999998888777653
Q ss_pred cCCcCCEEEEEEEeeEEeCCc----ceEEEEeecCCCCceEEceEEEEEEEecC
Q 043588 256 DLIEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVSFIDAIMRNV 305 (397)
Q Consensus 256 ~~~~~~v~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~ni~~~ni~~~~~ 305 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++...
T Consensus 383 --------~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 383 --------AAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred --------eeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 5789999997531 11123322111222234588999999864
No 116
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=82.29 E-value=33 Score=35.83 Aligned_cols=117 Identities=8% Similarity=0.092 Sum_probs=79.8
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeeccc
Q 043588 178 VINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+-..+ ..-.+++|++.+.-++-+|..
T Consensus 357 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~a--- 431 (587)
T PLN02313 357 VAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGNA--- 431 (587)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccce---
Confidence 344668899999999986543334455554 46889999999999888876665 345999999998878777653
Q ss_pred CCcCCEEEEEEEeeEEeCCcc--e--EEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 257 LIEEGVQNVTVFKTVFTGTTN--G--FRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~nI~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-... | -.|..........-..+.|.|+++....
T Consensus 432 -------~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 432 -------AAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred -------eEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 57899999975321 1 1233221112223446889999997644
No 117
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=82.21 E-value=39 Score=35.04 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=42.3
Q ss_pred EEccCCeEEEeeEEecCcc----eEEEEe-ceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCC
Q 043588 156 FTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGP 230 (397)
Q Consensus 156 ~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~ 230 (397)
....+++..+|++|.|... ..+.+. .++.+.+.||+|.+.. |-+.... .+-..++|.|...=|-|.
T Consensus 326 ~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~~-~rq~y~~C~I~GtVDFIF--- 396 (553)
T PLN02708 326 GVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ-----DTLYAHS-LRQFYKSCRIQGNVDFIF--- 396 (553)
T ss_pred EEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceeCC-CceEEEeeEEeecCCEEe---
Confidence 3456777777777777542 233332 4566666666666532 2233322 344566666665444331
Q ss_pred CCeeEEEEeeEEe
Q 043588 231 GTKNLWIERVTCG 243 (397)
Q Consensus 231 ~s~nv~i~n~~~~ 243 (397)
|...+.++||.+.
T Consensus 397 G~a~avfq~c~i~ 409 (553)
T PLN02708 397 GNSAAVFQDCAIL 409 (553)
T ss_pred cCceEEEEccEEE
Confidence 2346666666664
No 118
>PLN02304 probable pectinesterase
Probab=75.31 E-value=87 Score=30.76 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=10.2
Q ss_pred EccCCeEEEeeEEecC
Q 043588 157 TNSNNIRINGLLSLNS 172 (397)
Q Consensus 157 ~~~~nv~i~~v~i~~~ 172 (397)
...+++..+|++|.|.
T Consensus 159 v~a~~F~a~nITf~Nt 174 (379)
T PLN02304 159 VFASNFIAKNISFMNV 174 (379)
T ss_pred EECCCeEEEeeEEEec
Confidence 3456677777777665
No 119
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=74.40 E-value=72 Score=33.26 Aligned_cols=116 Identities=9% Similarity=0.099 Sum_probs=79.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCceeee-cceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccC
Q 043588 179 INGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|.|.........+.+. .+....+.+|.|....|-+...+ ..-.+++|++.+.-++-+|..
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 416 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGDA---- 416 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccCc----
Confidence 34568899999999986533344556554 36889999999999888776554 466899999998888777653
Q ss_pred CcCCEEEEEEEeeEEeCCcc----eEEEEeecCCCCceEEceEEEEEEEecCc
Q 043588 258 IEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVSFIDAIMRNVQ 306 (397)
Q Consensus 258 ~~~~v~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~ni~~~ni~~~~~~ 306 (397)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 417 ------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 417 ------KVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ------eEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 57899999975311 12343221111122345889999998754
No 120
>PLN02634 probable pectinesterase
Probab=72.78 E-value=79 Score=30.82 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=41.0
Q ss_pred EEccCCeEEEeeEEecCcc---------eEEEE-eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCce
Q 043588 156 FTNSNNIRINGLLSLNSQM---------FHIVI-NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDC 225 (397)
Q Consensus 156 ~~~~~nv~i~~v~i~~~~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~ 225 (397)
....+++..+|++|.|... ..+.+ ...+...+.+|+|.... |-+... ..+-..+||.|...=|-
T Consensus 145 ~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~Q-----DTL~~~-~gR~yf~~CyIeG~VDF 218 (359)
T PLN02634 145 TVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQ-----DTLCDD-AGRHYFKECYIEGSIDF 218 (359)
T ss_pred EEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEeccc-----ceeeeC-CCCEEEEeeEEcccccE
Confidence 3346777888888777531 12222 23555666666666532 222221 23455666666654343
Q ss_pred EEeCCCCeeEEEEeeEEe
Q 043588 226 IPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 226 i~i~~~s~nv~i~n~~~~ 243 (397)
|- + .....++||++.
T Consensus 219 IF-G--~g~a~Fe~C~I~ 233 (359)
T PLN02634 219 IF-G--NGRSMYKDCELH 233 (359)
T ss_pred Ec-C--CceEEEeccEEE
Confidence 31 2 235566666665
No 121
>PLN02665 pectinesterase family protein
Probab=69.99 E-value=1.1e+02 Score=29.94 Aligned_cols=137 Identities=15% Similarity=0.062 Sum_probs=64.9
Q ss_pred EEEEccCCeEEEeeEEecCcc---------eEEEE-eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCC
Q 043588 154 LRFTNSNNIRINGLLSLNSQM---------FHIVI-NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGD 223 (397)
Q Consensus 154 i~~~~~~nv~i~~v~i~~~~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d 223 (397)
-....++++..+|++|.|... ..+.+ ...+...+.||++.+.. |-+... ..+-..+||.|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~Q-----DTL~~~-~gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQ-----DTLCDD-KGRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecccc-----ceeEeC-CCCEEEEeeEEeecc
Confidence 344567888888888887531 22222 23566667777766532 223222 234556666666544
Q ss_pred ceEEeCCCCeeEEEEeeEEecC-ce--eEEeeecccCCcCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEE
Q 043588 224 DCIPIGPGTKNLWIERVTCGPG-HG--ISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDA 300 (397)
Q Consensus 224 D~i~i~~~s~nv~i~n~~~~~~-~g--i~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni 300 (397)
|-|- |.....+++|++..- .+ -.|-..+ +.....-....|.||++.+....+.++ +..+.-..+.|.+.
T Consensus 222 DFIF---G~g~a~fe~C~i~s~~~~~~g~ITA~~-r~~~~~~~GfvF~~C~itg~~~~~yLG----RpW~~ysrvVf~~t 293 (366)
T PLN02665 222 DFIF---GSGKSLYLNTELHVVGDGGLRVITAQA-RNSEAEDSGFSFVHCKVTGTGTGAYLG----RAWMSRPRVVFAYT 293 (366)
T ss_pred ceec---cccceeeEccEEEEecCCCcEEEEcCC-CCCCCCCceEEEEeeEEecCCCceeec----CCCCCcceEEEEcc
Confidence 4332 234556666666531 11 0111111 111112235567777776643222232 11222334666666
Q ss_pred EEec
Q 043588 301 IMRN 304 (397)
Q Consensus 301 ~~~~ 304 (397)
.|.+
T Consensus 294 ~m~~ 297 (366)
T PLN02665 294 EMSS 297 (366)
T ss_pred ccCC
Confidence 6553
No 122
>PLN02497 probable pectinesterase
Probab=67.39 E-value=1.2e+02 Score=29.29 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=36.2
Q ss_pred EccCCeEEEeeEEecCcc-----------eEEEE-eceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCc
Q 043588 157 TNSNNIRINGLLSLNSQM-----------FHIVI-NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDD 224 (397)
Q Consensus 157 ~~~~nv~i~~v~i~~~~~-----------~~i~~-~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD 224 (397)
...+++..+|++|.|... ..+.+ ...+...+.||++....| -+.. ...+-..+||.|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QD-----TLy~-~~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQD-----TLWD-SDGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccc-----ceee-CCCcEEEEeCEEEeccc
Confidence 446677777777766532 11221 234555555555554222 2211 12344555555554333
Q ss_pred eEEeCCCCeeEEEEeeEEe
Q 043588 225 CIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 225 ~i~i~~~s~nv~i~n~~~~ 243 (397)
-| ++ .....++||++.
T Consensus 186 FI-FG--~g~a~Fe~C~I~ 201 (331)
T PLN02497 186 FI-FG--SGQSIYESCVIQ 201 (331)
T ss_pred EE-cc--CceEEEEccEEE
Confidence 32 11 234555555554
No 123
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=63.73 E-value=24 Score=33.55 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=7.3
Q ss_pred ccCCeEEEeeEEecC
Q 043588 158 NSNNIRINGLLSLNS 172 (397)
Q Consensus 158 ~~~nv~i~~v~i~~~ 172 (397)
.-+++..+++++++.
T Consensus 187 ~~ndf~~~nlT~en~ 201 (405)
T COG4677 187 QNNDFQLQNLTIENT 201 (405)
T ss_pred ecCCcccccceeecc
Confidence 334455555555444
No 124
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=47.17 E-value=25 Score=18.76 Aligned_cols=9 Identities=56% Similarity=0.689 Sum_probs=3.5
Q ss_pred EEEEecEEe
Q 043588 212 VKITNCTIK 220 (397)
Q Consensus 212 v~I~n~~i~ 220 (397)
++|++|.|.
T Consensus 4 ~~i~~n~i~ 12 (26)
T smart00710 4 VTIENNTIR 12 (26)
T ss_pred EEEECCEEE
Confidence 333444433
No 125
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=41.70 E-value=1.8e+02 Score=23.19 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=43.7
Q ss_pred EccCCeEEEeeEEecCc---ceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEe-cEEecCCceEE
Q 043588 157 TNSNNIRINGLLSLNSQ---MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITN-CTIKTGDDCIP 227 (397)
Q Consensus 157 ~~~~nv~i~~v~i~~~~---~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 227 (397)
..+.+..+.+-.+.+.. .+++.+..+.+..+.+.++. .. .. .+|++++.+.+..+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 55667777777776653 78888877666666666665 11 12 6788888877777776 44444555543
No 126
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.49 E-value=77 Score=26.05 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHhhcc-CCCcEEEEcCceEEeecee
Q 043588 46 TDSTQAFAKAWDAACTS-TESATINVPKGRYLLGSVA 81 (397)
Q Consensus 46 tddt~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~ 81 (397)
.++...||+|=.....+ ......-+|||+|-+..+.
T Consensus 59 ~~~~~~f~ractsit~dpv~~~f~~Lk~G~YAvaa~q 95 (151)
T COG4704 59 MSDPSRFQRACTSITGDPVSKSFYGLKPGKYAVAAFQ 95 (151)
T ss_pred CCCchHHhhhcccccCCchhheeecCCCccEEEEEEE
Confidence 46677788773222011 1112334699999876543
No 127
>PF15240 Pro-rich: Proline-rich
Probab=31.20 E-value=36 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhccccCceeEEe
Q 043588 12 LFIILFILSINLASSYATTTTYNV 35 (397)
Q Consensus 12 l~~~~~~~~~~~~~~~~~~~~~~v 35 (397)
|++||.++||+|+++......++-
T Consensus 2 LlVLLSvALLALSSAQ~~dEdv~~ 25 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDEDVSQ 25 (179)
T ss_pred hhHHHHHHHHHhhhcccccccccc
Confidence 344455555556565555544443
No 128
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=27.63 E-value=72 Score=31.70 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=58.7
Q ss_pred EEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEE-ecC-ceeEEeee
Q 043588 176 HIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTC-GPG-HGISIGSL 253 (397)
Q Consensus 176 ~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~-~~~-~gi~igs~ 253 (397)
++.+..-..-.++...|++. .--|+.+...+|-.|+.+.|++++.++-+..+.... ++++++ .++ .|+-|++.
T Consensus 397 GVyFydng~glle~ndi~~~----~ysgvqirtGsNP~i~~NkIWggqNGvLVyn~G~Gc-~E~NeIFDNaMagVwIKTd 471 (625)
T KOG1777|consen 397 GVYFYDNGHGLLEQNDIRNH----KYSGVQIRTGSNPKIRRNKIWGGQNGVLVYNGGLGC-LEDNEIFDNAMAGVWIKTD 471 (625)
T ss_pred EEEEEeCCcchhhhhhhhhc----cccceEeecCCCCeeeecceecCcccEEEEcCcccc-cccccchhhhhcceEEecC
Confidence 44555555555555666652 234677766678888888888888776655432221 222222 222 35555543
Q ss_pred cccCCcCCEEEEEEEeeEEeCC-cceEEEEeecCCCCceE-EceEEEEEEEe
Q 043588 254 AKDLIEEGVQNVTVFKTVFTGT-TNGFRIKSWARPSNGFV-QGVSFIDAIMR 303 (397)
Q Consensus 254 ~~~~~~~~v~nI~i~n~~~~~~-~~gi~i~~~~~~~~g~i-~ni~~~ni~~~ 303 (397)
++=+++.+.+.+. +.|+.|.. + +.|.+ .|=.|+|--++
T Consensus 472 ---------s~PtlrRNKI~dgRdgGicifn--g-GkGlle~neif~Nalit 511 (625)
T KOG1777|consen 472 ---------SNPTLRRNKIYDGRDGGICIFN--G-GKGLLEHNEIFRNALIT 511 (625)
T ss_pred ---------CCcceeecceecCCCCcEEEec--C-Cceeeechhhhhccccc
Confidence 2334566666654 34666643 2 33433 33455555443
No 129
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=27.26 E-value=76 Score=27.57 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=7.9
Q ss_pred CchhhhhHHHHHH
Q 043588 1 MERLFSSLFSSLF 13 (397)
Q Consensus 1 m~~~~~~~~~~l~ 13 (397)
|+++|++....+.
T Consensus 1 m~~~~~~~~~~~~ 13 (178)
T PRK13884 1 MSRILKRITAGVA 13 (178)
T ss_pred CcHHHHHHHHHHH
Confidence 7776666554444
No 130
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=27.18 E-value=52 Score=27.43 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=10.1
Q ss_pred CchhhhhHHHHHHHHHHH
Q 043588 1 MERLFSSLFSSLFIILFI 18 (397)
Q Consensus 1 m~~~~~~~~~~l~~~~~~ 18 (397)
|+++++++.+.++.+|++
T Consensus 2 ~~~~~~~~~s~~~a~l~~ 19 (155)
T COG3043 2 MKKHIKKQGSCLIALLLA 19 (155)
T ss_pred chhhhhhhhHHHHHHHHH
Confidence 667777766544443333
No 131
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=25.96 E-value=3.4e+02 Score=21.51 Aligned_cols=38 Identities=16% Similarity=0.026 Sum_probs=18.1
Q ss_pred eecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEe
Q 043588 182 CKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIK 220 (397)
Q Consensus 182 ~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 220 (397)
+.+..+.+..+..... .+..|+.+..+.+..+.++.+.
T Consensus 75 ~~~~~i~~N~~~~~~~-~~~~Gi~~~~~~~~~~~~N~i~ 112 (146)
T smart00722 75 TGKNLIIDNVTINGTE-GSGAGIVVTAGSEGLFIGNRII 112 (146)
T ss_pred ccccEEEcceecCCCc-cceEEEEEECCccceEecCeEE
Confidence 4455555555554211 1245666665544444444443
No 132
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=23.38 E-value=56 Score=25.37 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=10.2
Q ss_pred CCCcEEEEcCceEEe
Q 043588 63 TESATINVPKGRYLL 77 (397)
Q Consensus 63 ~~g~~v~ip~G~Y~~ 77 (397)
.+|..|++|||+|+.
T Consensus 86 ~~Ge~V~i~pg~~H~ 100 (114)
T PF02373_consen 86 KPGEFVFIPPGAYHQ 100 (114)
T ss_dssp ETT-EEEE-TT-EEE
T ss_pred CCCCEEEECCCceEE
Confidence 678999999999974
No 133
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=21.49 E-value=87 Score=26.04 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=5.1
Q ss_pred CchhhhhHH
Q 043588 1 MERLFSSLF 9 (397)
Q Consensus 1 m~~~~~~~~ 9 (397)
|+|..++..
T Consensus 1 ~~kf~~~~~ 9 (146)
T PF10916_consen 1 MKKFAKKNV 9 (146)
T ss_pred CchHHHHHH
Confidence 666555544
No 134
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=69 Score=31.16 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=16.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhcc
Q 043588 1 MERLFSSLFSSLFIILFILSINLASS 26 (397)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~~~~ 26 (397)
|+|++..++...++.|+++++++..+
T Consensus 1 MdK~lns~W~irIiaff~A~~Lfl~v 26 (403)
T COG4856 1 MDKFLNSPWLIRIIAFFFAILLFLYV 26 (403)
T ss_pred CcchhcCcHhHHHHHHHHHHHhheee
Confidence 89988886655555555555444433
No 135
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=20.20 E-value=86 Score=24.06 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=19.4
Q ss_pred eccCccC-CCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEe
Q 043588 36 LSFGAKG-NGVTDSTQAFAKAWDAACTSTESATINVPKGRYLL 77 (397)
Q Consensus 36 ~d~GA~~-dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~ 77 (397)
.|||..+ ......-..+++||..-.. ...+ +..|||+.
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~--~~~t--v~~GtYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIK--NPDT--VEKGTYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH---TT---EE--BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhC--CCCe--Eeccceec
Confidence 5899887 4445555788888875433 2356 44999984
No 136
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=20.15 E-value=58 Score=29.88 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=13.7
Q ss_pred ceEEEeEEEEeEEEeeC
Q 043588 328 GVKINDITYQDIRGTSA 344 (397)
Q Consensus 328 ~~~i~nI~f~ni~~~~~ 344 (397)
+++|+||.|+|+.+...
T Consensus 211 gatI~nL~l~nv~I~~~ 227 (250)
T PF05342_consen 211 GATIKNLNLKNVNINGP 227 (250)
T ss_pred CCEEEcceeEEeeeecc
Confidence 45888888888888775
Done!