BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043591
         (95 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
           GN=At4g24660 PE=1 SV=1
          Length = 220

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 27  VRYAECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRSFHRREVDT 81
           +RY EC KNHA  +GG+AVDGC EFM SGE+GT  AL CAACGCHR+FHR+E ++
Sbjct: 47  IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES 101


>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
           GN=At5g65410 PE=1 SV=1
          Length = 279

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 41/53 (77%)

Query: 27  VRYAECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRSFHRREV 79
            R+ EC KN A  +GG+AVDGC EFM +G EGT  AL CAACGCHR+FHR+E+
Sbjct: 73  FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125


>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
          Length = 242

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 29  YAECQKNHAAGVGGYAVDGCREFMAS--GEEGTAAALTCAACGCHRSFHRRE----VDTE 82
           Y EC KNHAA +GG+A+DGC EFM S        ++L CAACGCHR+FHRR+    ++  
Sbjct: 31  YKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLNFL 90

Query: 83  VVCECSSPSST 93
                SSPS T
Sbjct: 91  TAPPISSPSGT 101


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.125    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,786,045
Number of Sequences: 539616
Number of extensions: 1019714
Number of successful extensions: 2483
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2474
Number of HSP's gapped (non-prelim): 12
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)