Query 043591
Match_columns 95
No_of_seqs 108 out of 184
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1faq_A RAF-1; transferase, ser 45.3 10 0.00036 21.0 1.6 28 43-77 15-44 (52)
2 1k81_A EIF-2-beta, probable tr 42.2 5.5 0.00019 22.1 0.1 14 60-73 19-32 (36)
3 2fnf_X Putative RAS effector N 40.2 13 0.00045 22.8 1.6 30 42-77 35-66 (72)
4 1nee_A EIF-2-beta, probable tr 36.4 11 0.00036 26.5 0.8 16 59-74 120-135 (138)
5 3gj5_B Nuclear pore complex pr 33.7 15 0.00051 20.5 1.0 11 59-69 18-28 (34)
6 3gj3_B Nuclear pore complex pr 32.1 16 0.00056 20.1 1.0 11 59-69 18-28 (33)
7 1rfh_A RAS association (ralgds 31.9 18 0.0006 21.2 1.2 25 43-73 23-49 (59)
8 2g2k_A EIF-5, eukaryotic trans 27.2 18 0.00062 26.4 0.7 19 59-77 116-134 (170)
9 3cw2_K Translation initiation 26.6 20 0.00068 25.1 0.9 16 59-74 121-136 (139)
10 2e9h_A EIF-5, eukaryotic trans 26.2 17 0.00057 26.2 0.4 19 58-76 122-140 (157)
11 3uej_A NPKC-delta, protein kin 25.8 22 0.00076 20.8 0.8 32 43-77 21-54 (65)
12 2enz_A NPKC-theta, protein kin 25.5 47 0.0016 19.4 2.3 33 43-78 24-58 (65)
13 1mm2_A MI2-beta; PHD, zinc fin 24.9 41 0.0014 19.7 2.0 17 61-79 20-36 (61)
14 3j20_Y 30S ribosomal protein S 24.6 23 0.00079 20.7 0.8 18 48-69 25-44 (50)
15 2d74_B Translation initiation 24.4 31 0.001 24.5 1.5 17 59-75 122-138 (148)
16 2ebr_A Nuclear pore complex pr 22.9 32 0.0011 20.2 1.2 12 59-70 22-33 (47)
17 2ebq_A Nuclear pore complex pr 22.9 30 0.001 20.5 1.0 12 59-70 22-33 (47)
18 2lri_C Autoimmune regulator; Z 21.9 38 0.0013 20.5 1.4 15 61-77 23-37 (66)
19 2ebv_A Nuclear pore complex pr 20.9 37 0.0013 20.8 1.2 12 59-70 42-53 (57)
20 4b6d_A RAC GTPase-activating p 20.8 44 0.0015 20.0 1.5 32 43-78 20-53 (61)
21 2k1p_A Zinc finger RAN-binding 20.1 45 0.0016 17.8 1.3 17 62-79 6-22 (33)
No 1
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=45.31 E-value=10 Score=21.04 Aligned_cols=28 Identities=25% Similarity=0.683 Sum_probs=19.0
Q ss_pred ccccCccccccCCCCCCcccccccCcc--ccccCccc
Q 043591 43 YAVDGCREFMASGEEGTAAALTCAACG--CHRSFHRR 77 (95)
Q Consensus 43 havDGCgEFmpsg~egt~~aL~CaACG--CHRNFHRr 77 (95)
..=|=|++||- ..++|..|+ ||+.-+.+
T Consensus 15 t~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 15 AFCDICQKFLL-------NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp EECTTSSSEEC-------SEEECTTTTCCBCSTTSSS
T ss_pred cCCCCcccccc-------cCCEeCCCCCeEChhHHhh
Confidence 34467889885 489999985 55554444
No 2
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=42.20 E-value=5.5 Score=22.12 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=10.9
Q ss_pred cccccccCcccccc
Q 043591 60 AAALTCAACGCHRS 73 (95)
Q Consensus 60 ~~aL~CaACGCHRN 73 (95)
.-.|+|.|||=++.
T Consensus 19 ~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 19 VHLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEEETTTEEEE
T ss_pred cEEEEhhcCCCccc
Confidence 45789999997664
No 3
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=40.16 E-value=13 Score=22.81 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=21.0
Q ss_pred CccccCccccccCCCCCCcccccccCc--cccccCccc
Q 043591 42 GYAVDGCREFMASGEEGTAAALTCAAC--GCHRSFHRR 77 (95)
Q Consensus 42 ghavDGCgEFmpsg~egt~~aL~CaAC--GCHRNFHRr 77 (95)
...=|=|++|| . ...++|..| .||+.=+.+
T Consensus 35 pt~C~~C~~~l--~----~qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 35 PGWCDLCGREV--L----RQALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CCBCTTTSSBC--S----SCCEECTTSSCEECTGGGGG
T ss_pred CcchhhhhHHH--H----hCcCccCCCCCeechhhhcc
Confidence 34568899999 2 357999999 466655544
No 4
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=36.41 E-value=11 Score=26.54 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=12.7
Q ss_pred CcccccccCccccccC
Q 043591 59 TAAALTCAACGCHRSF 74 (95)
Q Consensus 59 t~~aL~CaACGCHRNF 74 (95)
-.-.|+|.|||-+|..
T Consensus 120 r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 120 RISLLKCEACGAKAPL 135 (138)
T ss_dssp TTTEEECSTTSCCCCS
T ss_pred CeEEEEccCCCCCccc
Confidence 4468999999988764
No 5
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=33.71 E-value=15 Score=20.48 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=9.2
Q ss_pred CcccccccCcc
Q 043591 59 TAAALTCAACG 69 (95)
Q Consensus 59 t~~aL~CaACG 69 (95)
..++++|.||.
T Consensus 18 ~~~~~kC~aCe 28 (34)
T 3gj5_B 18 KADSTKCIACE 28 (34)
T ss_dssp CSSCSBCTTTC
T ss_pred ccccCEEcccC
Confidence 45799999996
No 6
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=32.07 E-value=16 Score=20.11 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=9.2
Q ss_pred CcccccccCcc
Q 043591 59 TAAALTCAACG 69 (95)
Q Consensus 59 t~~aL~CaACG 69 (95)
.+++++|.||.
T Consensus 18 ~~~~~kC~aC~ 28 (33)
T 3gj3_B 18 KPEAVKCVACE 28 (33)
T ss_dssp CTTCSBCTTTC
T ss_pred ccccCEEcccC
Confidence 45799999996
No 7
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=31.88 E-value=18 Score=21.23 Aligned_cols=25 Identities=36% Similarity=0.584 Sum_probs=17.8
Q ss_pred ccccCccccccCCCCCCcccccccCcc--cccc
Q 043591 43 YAVDGCREFMASGEEGTAAALTCAACG--CHRS 73 (95)
Q Consensus 43 havDGCgEFmpsg~egt~~aL~CaACG--CHRN 73 (95)
.-=|=|++|| . ...++|..|+ ||+.
T Consensus 23 t~C~~C~~~i--~----kqg~kC~~C~~~cH~k 49 (59)
T 1rfh_A 23 GWCDLCGREV--L----RQALRCANCKFTCHSE 49 (59)
T ss_dssp EECTTTCSEE--C----SCCEECTTTSCEECHH
T ss_pred eEchhcchhh--h----hCccEeCCCCCeEehh
Confidence 4457899999 2 3579999984 5543
No 8
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=27.18 E-value=18 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.0
Q ss_pred CcccccccCccccccCccc
Q 043591 59 TAAALTCAACGCHRSFHRR 77 (95)
Q Consensus 59 t~~aL~CaACGCHRNFHRr 77 (95)
-.-.|+|.|||-+|.-.-+
T Consensus 116 r~~~l~C~ACGa~~~V~~~ 134 (170)
T 2g2k_A 116 QTIGNSCKACGYRGMLDTH 134 (170)
T ss_dssp TEEEEEETTTCCCCCSCSS
T ss_pred CEEEEEccccCCccccccc
Confidence 4457999999999987643
No 9
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=26.64 E-value=20 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=7.1
Q ss_pred CcccccccCccccccC
Q 043591 59 TAAALTCAACGCHRSF 74 (95)
Q Consensus 59 t~~aL~CaACGCHRNF 74 (95)
-.-.|+|.|||-+|..
T Consensus 121 r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 121 KSWYIVCLACGAQTPV 136 (139)
T ss_dssp STTTSSCCC-------
T ss_pred CeEEEEecCCCCCCcc
Confidence 3468999999988753
No 10
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.24 E-value=17 Score=26.19 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=14.7
Q ss_pred CCcccccccCccccccCcc
Q 043591 58 GTAAALTCAACGCHRSFHR 76 (95)
Q Consensus 58 gt~~aL~CaACGCHRNFHR 76 (95)
+-.-.|+|.|||-+|...-
T Consensus 122 ~r~~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 122 KQTIGNSCKACGYRGMLDT 140 (157)
T ss_dssp TTEEEEECSSSCCEEECCC
T ss_pred CCEEEEEccCCCCCCcccc
Confidence 3446889999999987764
No 11
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=25.80 E-value=22 Score=20.79 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=20.9
Q ss_pred ccccCccccccCCCCCCcccccccCcc--ccccCccc
Q 043591 43 YAVDGCREFMASGEEGTAAALTCAACG--CHRSFHRR 77 (95)
Q Consensus 43 havDGCgEFmpsg~egt~~aL~CaACG--CHRNFHRr 77 (95)
..=|=|++||..- ....++|..|+ ||+.-+.+
T Consensus 21 t~C~~C~~~l~Gl---~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 21 TFCDHCGSLLWGL---VKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CBCTTTCCBCCSS---SSCEEEETTTCCEECHHHHTT
T ss_pred CcccccChhhhcc---CceeeECCCCCCeEchhHhhh
Confidence 3457799999641 23589999886 55544444
No 12
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=25.53 E-value=47 Score=19.37 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=22.7
Q ss_pred ccccCccccccCCCCCCcccccccCcc--ccccCcccc
Q 043591 43 YAVDGCREFMASGEEGTAAALTCAACG--CHRSFHRRE 78 (95)
Q Consensus 43 havDGCgEFmpsg~egt~~aL~CaACG--CHRNFHRre 78 (95)
..=|=|++||-.- ....++|..|+ ||+.-+.+.
T Consensus 24 t~C~~C~~~l~Gl---~~qg~~C~~C~~~~Hk~C~~~v 58 (65)
T 2enz_A 24 TFCEHCGTLLWGL---ARQGLKCDACGMNVHHRCQTKV 58 (65)
T ss_dssp CBCSSSCCBCCCS---SSCSEEESSSCCEECTTTTTTS
T ss_pred cCchhcChhheec---CCcccccCCCCCccCHhHHhhC
Confidence 4457899999631 23689999984 777666653
No 13
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.93 E-value=41 Score=19.69 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=11.9
Q ss_pred ccccccCccccccCccccc
Q 043591 61 AALTCAACGCHRSFHRREV 79 (95)
Q Consensus 61 ~aL~CaACGCHRNFHRre~ 79 (95)
+-|.|.. |.|.||..=+
T Consensus 20 ~ll~Cd~--C~~~fH~~Cl 36 (61)
T 1mm2_A 20 ELLCCDT--CPSSYHIHCL 36 (61)
T ss_dssp SCBCCSS--SCCCBCSSSS
T ss_pred CEEEcCC--CCHHHccccc
Confidence 3566774 7799998743
No 14
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.63 E-value=23 Score=20.73 Aligned_cols=18 Identities=39% Similarity=0.962 Sum_probs=13.4
Q ss_pred ccc--cccCCCCCCcccccccCcc
Q 043591 48 CRE--FMASGEEGTAAALTCAACG 69 (95)
Q Consensus 48 CgE--Fmpsg~egt~~aL~CaACG 69 (95)
||. ||... .+.+.|..||
T Consensus 25 CG~~~fm~~~----~~R~~C~kCG 44 (50)
T 3j20_Y 25 CGPGVFMADH----GDRWACGKCG 44 (50)
T ss_dssp SCSSCEEEEC----SSEEECSSSC
T ss_pred CCCceEEecC----CCeEECCCCC
Confidence 666 88863 3688999887
No 15
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.35 E-value=31 Score=24.50 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=13.2
Q ss_pred CcccccccCccccccCc
Q 043591 59 TAAALTCAACGCHRSFH 75 (95)
Q Consensus 59 t~~aL~CaACGCHRNFH 75 (95)
-.-.|+|.|||-.|.-.
T Consensus 122 r~~~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 122 RFHFLKCEACGAETPIQ 138 (148)
T ss_dssp SSBCCCCSSSCCCCCCC
T ss_pred CEEEEEecCCCCCcccc
Confidence 45689999999887643
No 16
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.91 E-value=32 Score=20.25 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.9
Q ss_pred CcccccccCccc
Q 043591 59 TAAALTCAACGC 70 (95)
Q Consensus 59 t~~aL~CaACGC 70 (95)
..++++|.||+=
T Consensus 22 ~a~~~kC~aC~~ 33 (47)
T 2ebr_A 22 KADSTKCLACES 33 (47)
T ss_dssp CSSCSBCSSSCC
T ss_pred cCCcceecCcCC
Confidence 468999999974
No 17
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.88 E-value=30 Score=20.49 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=9.7
Q ss_pred CcccccccCccc
Q 043591 59 TAAALTCAACGC 70 (95)
Q Consensus 59 t~~aL~CaACGC 70 (95)
..++++|.||+=
T Consensus 22 ~a~~~kC~aCet 33 (47)
T 2ebq_A 22 KPEAIKCVACET 33 (47)
T ss_dssp CSSCSBCSSSCC
T ss_pred ccCCceecCcCC
Confidence 457999999974
No 18
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.94 E-value=38 Score=20.53 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=11.0
Q ss_pred ccccccCccccccCccc
Q 043591 61 AALTCAACGCHRSFHRR 77 (95)
Q Consensus 61 ~aL~CaACGCHRNFHRr 77 (95)
+.|.|.. |.+.||..
T Consensus 23 ~ll~Cd~--C~~~~H~~ 37 (66)
T 2lri_C 23 DVLRCTH--CAAAFHWR 37 (66)
T ss_dssp TCEECSS--SCCEECHH
T ss_pred eEEECCC--CCCceecc
Confidence 3677774 67999975
No 19
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.86 E-value=37 Score=20.85 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=9.8
Q ss_pred CcccccccCccc
Q 043591 59 TAAALTCAACGC 70 (95)
Q Consensus 59 t~~aL~CaACGC 70 (95)
..++++|.||+-
T Consensus 42 ~a~~~kC~ACet 53 (57)
T 2ebv_A 42 NAEDNKCVSCMS 53 (57)
T ss_dssp CSSCSBCSSSCC
T ss_pred ccCCceeeEcCC
Confidence 468999999973
No 20
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=20.77 E-value=44 Score=20.00 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=21.9
Q ss_pred ccccCccccccCCCCCCcccccccCcc--ccccCcccc
Q 043591 43 YAVDGCREFMASGEEGTAAALTCAACG--CHRSFHRRE 78 (95)
Q Consensus 43 havDGCgEFmpsg~egt~~aL~CaACG--CHRNFHRre 78 (95)
--=|=|++.+--| ..+++|..|+ ||..=|.+.
T Consensus 20 ~~C~~Cg~~i~~g----kq~~kC~dC~~~cH~~C~~~~ 53 (61)
T 4b6d_A 20 ESCVPCGKRIKFG----KLSLKCRDCRVVSHPECRDRC 53 (61)
T ss_dssp EECTTTCCEECTT----CEEEEESSSSCEECGGGGGGS
T ss_pred cccccccCEEEEe----eEeeECCCCCCeEchhHhhcC
Confidence 3346677777322 3689999999 888776654
No 21
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.15 E-value=45 Score=17.82 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=12.8
Q ss_pred cccccCccccccCccccc
Q 043591 62 ALTCAACGCHRSFHRREV 79 (95)
Q Consensus 62 aL~CaACGCHRNFHRre~ 79 (95)
--+|..|+- .||.+|..
T Consensus 6 DW~C~~C~~-~Nfa~R~~ 22 (33)
T 2k1p_A 6 DWQCKTCSN-VNWARRSE 22 (33)
T ss_dssp SCBCSSSCC-BCCTTCSB
T ss_pred CcccCCCCC-cccccccc
Confidence 457998875 59999964
Done!