Query 043591
Match_columns 95
No_of_seqs 108 out of 184
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 10:50:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k81a_ g.59.1.1 (A:) Zinc-bin 42.6 2.4 0.00017 23.0 -0.0 16 58-73 17-32 (36)
2 d1neea2 g.59.1.1 (A:99-135) Zi 26.7 11 0.00078 20.3 1.0 16 58-73 18-33 (37)
3 d2gqea1 g.41.11.1 (A:3-31) Nuc 23.7 14 0.001 18.8 1.0 11 59-69 15-25 (29)
4 d1xa6a3 g.49.1.1 (A:209-270) B 20.3 20 0.0014 19.6 1.3 31 42-77 15-45 (62)
5 d1iyma_ g.44.1.1 (A:) EL5 RING 20.3 20 0.0015 19.2 1.4 14 62-77 21-34 (55)
6 d1j2oa2 g.39.1.3 (A:31-63) Rho 17.9 17 0.0012 19.3 0.6 9 63-71 1-9 (33)
7 d1ptqa_ g.49.1.1 (A:) Protein 16.2 29 0.0021 18.0 1.3 23 44-69 13-35 (50)
8 d2b5id1 g.18.1.1 (D:1-64) Inte 15.8 25 0.0018 21.0 1.1 10 67-76 27-36 (64)
9 d1pjza_ c.66.1.36 (A:) Thiopur 11.1 50 0.0036 19.0 1.5 19 31-49 11-30 (201)
10 d1whla_ b.34.10.1 (A:) Cylindr 10.7 41 0.003 20.6 1.0 27 12-38 52-78 (95)
No 1
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=42.60 E-value=2.4 Score=22.96 Aligned_cols=16 Identities=44% Similarity=0.902 Sum_probs=12.5
Q ss_pred CCcccccccCcccccc
Q 043591 58 GTAAALTCAACGCHRS 73 (95)
Q Consensus 58 gt~~aL~CaACGCHRN 73 (95)
+-..-|+|.|||-.|.
T Consensus 17 ~R~~~l~C~aCGa~r~ 32 (36)
T d1k81a_ 17 GRVHLLKCMACGAIRP 32 (36)
T ss_dssp TTEEEEEEETTTEEEE
T ss_pred CCEEEEEeccCCCCCc
Confidence 3456799999998775
No 2
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.68 E-value=11 Score=20.28 Aligned_cols=16 Identities=38% Similarity=0.885 Sum_probs=12.6
Q ss_pred CCcccccccCcccccc
Q 043591 58 GTAAALTCAACGCHRS 73 (95)
Q Consensus 58 gt~~aL~CaACGCHRN 73 (95)
+-..-|+|.|||=.|.
T Consensus 18 ~R~~~l~C~aCGa~r~ 33 (37)
T d1neea2 18 GRISLLKCEACGAKAP 33 (37)
T ss_dssp TTTTEEECSTTSCCCC
T ss_pred CCEEEEEeccCCCCcc
Confidence 4456899999998775
No 3
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.67 E-value=14 Score=18.83 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=8.8
Q ss_pred CcccccccCcc
Q 043591 59 TAAALTCAACG 69 (95)
Q Consensus 59 t~~aL~CaACG 69 (95)
..++.+|.||.
T Consensus 15 ~~~~~~CvAC~ 25 (29)
T d2gqea1 15 KPEAIKCVACE 25 (29)
T ss_dssp CTTCSBCSSSC
T ss_pred hhhCCEEeecC
Confidence 35789999996
No 4
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.34 E-value=20 Score=19.56 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=20.3
Q ss_pred CccccCccccccCCCCCCcccccccCccccccCccc
Q 043591 42 GYAVDGCREFMASGEEGTAAALTCAACGCHRSFHRR 77 (95)
Q Consensus 42 ghavDGCgEFmpsg~egt~~aL~CaACGCHRNFHRr 77 (95)
...=|=|.++|.... ..+++|..|+ .+.|.+
T Consensus 15 pt~C~~C~~~i~g~~---~~g~~C~~C~--~~~H~~ 45 (62)
T d1xa6a3 15 PHWCEYCANFMWGLI---AQGVRCSDCG--LNVHKQ 45 (62)
T ss_dssp CCBCTTTCCBCCTTT---TCEECCSSSC--CCBCTG
T ss_pred CCCCcccCccccccc---cCeEEcCCCC--chhhHH
Confidence 344577999997422 3689999875 444444
No 5
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=20.30 E-value=20 Score=19.20 Aligned_cols=14 Identities=43% Similarity=0.797 Sum_probs=9.2
Q ss_pred cccccCccccccCccc
Q 043591 62 ALTCAACGCHRSFHRR 77 (95)
Q Consensus 62 aL~CaACGCHRNFHRr 77 (95)
.++...|| | .||..
T Consensus 21 ~~~l~~C~-H-~Fh~~ 34 (55)
T d1iyma_ 21 ARFLPRCG-H-GFHAE 34 (55)
T ss_dssp CEECSSSC-C-EECTT
T ss_pred EEEeCCCC-C-cccHH
Confidence 44556676 6 79975
No 6
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.91 E-value=17 Score=19.35 Aligned_cols=9 Identities=56% Similarity=1.689 Sum_probs=7.6
Q ss_pred ccccCcccc
Q 043591 63 LTCAACGCH 71 (95)
Q Consensus 63 L~CaACGCH 71 (95)
|+|..|+|.
T Consensus 1 LkC~cC~cR 9 (33)
T d1j2oa2 1 LSCDLCGCR 9 (33)
T ss_dssp CCCSSSCSC
T ss_pred Ccccccccc
Confidence 689999994
No 7
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.23 E-value=29 Score=18.04 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=16.2
Q ss_pred cccCccccccCCCCCCcccccccCcc
Q 043591 44 AVDGCREFMASGEEGTAAALTCAACG 69 (95)
Q Consensus 44 avDGCgEFmpsg~egt~~aL~CaACG 69 (95)
.=|=|.++|.... ..+++|..|+
T Consensus 13 ~C~~C~~~i~g~~---~qg~~C~~C~ 35 (50)
T d1ptqa_ 13 FCDHCGSLLWGLV---KQGLKCEDCG 35 (50)
T ss_dssp BCTTTCCBCCSSS---SCEEEETTTC
T ss_pred CCcccCCcccCcc---cCcEECCCCC
Confidence 3466888886422 3689999986
No 8
>d2b5id1 g.18.1.1 (D:1-64) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.84 E-value=25 Score=21.04 Aligned_cols=10 Identities=50% Similarity=1.328 Sum_probs=8.3
Q ss_pred CccccccCcc
Q 043591 67 ACGCHRSFHR 76 (95)
Q Consensus 67 ACGCHRNFHR 76 (95)
-|.|-|.|-|
T Consensus 27 NCeCkrGFRR 36 (64)
T d2b5id1 27 NCECKRGFRR 36 (64)
T ss_dssp ECCCCTTEEE
T ss_pred eeccccccee
Confidence 4789999976
No 9
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}
Probab=11.15 E-value=50 Score=19.02 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=10.4
Q ss_pred HhhhhhccccCCcccc-Ccc
Q 043591 31 ECQKNHAAGVGGYAVD-GCR 49 (95)
Q Consensus 31 EC~kNHAa~~GghavD-GCg 49 (95)
++...-...-|..++| |||
T Consensus 11 ~~~~~l~~~~~~rvLd~GCG 30 (201)
T d1pjza_ 11 QYWSSLNVVPGARVLVPLCG 30 (201)
T ss_dssp HHHHHHCCCTTCEEEETTTC
T ss_pred HHHHHcCCCCCCEEEEecCc
Confidence 4444444455666666 665
No 10
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.74 E-value=41 Score=20.58 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=17.9
Q ss_pred CCCCCCCCCceeecceehHHhhhhhcc
Q 043591 12 EPSRNSTASSVTVRSVRYAECQKNHAA 38 (95)
Q Consensus 12 ~~~~~s~~~~~~~~~v~Y~EC~kNHAa 38 (95)
+++++.....-+...++|=+|..||..
T Consensus 52 d~~~~~Gk~dGt~~G~rYF~C~~~~Gi 78 (95)
T d1whla_ 52 EEGRGQGFTDGVYQGKQLFQCDEDCGV 78 (95)
T ss_dssp SSSCSCCSSTTEETTEECCCCCTTTEE
T ss_pred CCcCCCCccCCEECCEEEEecCCCcEE
Confidence 333444445566788999999877754
Done!