BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043593
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 7 ITNSEDTALHIAVSDGRSDIVLKLVE 32
+ +DT LH+A S G DIV KL++
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQ 88
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 7 ITNSEDTALHIAVSDGRSDIVLKLVE 32
+ +DT LH+A S G DIV KL++
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQ 93
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
Length = 253
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 1 MIQAAKITNSED----TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNT 51
+ Q A + N D TALH+A + RSD +L+E AS +Q+ G T
Sbjct: 43 IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLE-----ASADANIQDNMGRT 92
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 1 MIQAAKITNSED----TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNT 51
+ Q A + N D TALH+A RSD +L+E AS +Q+ G T
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRT 60
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 1 MIQAAKITNSED----TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNT 51
+ Q A + N D TALH+A RSD +L+E AS +Q+ G T
Sbjct: 8 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----ASADAXIQDNMGRT 57
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex
Including Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter
Dna Sequence
Length = 256
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 1 MIQAAKITNSED----TALHIAVSDGRSDIVLKLVES 33
+ Q A + N D TALH+A RSD +L+E+
Sbjct: 44 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 80
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 5 AKITNSEDTALHIAVSDGRSDIVLKLV 31
AK + + TAL +AVS GR D+V L+
Sbjct: 177 AKASQAGQTALMLAVSHGRVDVVKALL 203
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 1 MIQAAKITNSED----TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNT 51
+ Q A + N D TALH+A RSD +L+E AS +Q+ G T
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRT 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,976,312
Number of Sequences: 62578
Number of extensions: 50653
Number of successful extensions: 170
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 9
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)