BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043594
(86 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
Length = 526
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/79 (67%), Positives = 69/79 (87%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC STR++RGG QY CLA+ +GF+AN Y+GSSL++F GKCGE + YK+F++MPVRNV
Sbjct: 135 VSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAYKVFKEMPVRNV 194
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTAII+ FAQ+W+VDMC
Sbjct: 195 VSWTAIISGFAQDWQVDMC 213
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G C + GFV+ +++ ++L+S KCG D + +FE M +++
Sbjct: 236 LSACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGKDI 295
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA +AQ
Sbjct: 296 VSWNSMIAGYAQ 307
>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
Length = 524
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 64/76 (84%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S RN+RGG QY +A+R+GF+ANVYVGSSL+S GKCGE + Y++F++MPVRNVVSW
Sbjct: 140 CNSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCGELSNAYRVFDEMPVRNVVSW 199
Query: 66 TAIIAAFAQEWEVDMC 81
TAIIA FA EW+V+MC
Sbjct: 200 TAIIAGFAVEWQVNMC 215
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGE-NIDVYKMFEKMPVRN 61
+T+C + + G C V+ GF + ++V ++LIS KCG N +Y +FE M V++
Sbjct: 238 LTACTGSGALGVGRSLHCQTVKMGFHSYLHVANALISMYCKCGALNFALY-IFEAMEVKD 296
Query: 62 VVSWTAIIAAFAQ 74
VSW ++IA +AQ
Sbjct: 297 TVSWNSMIAGYAQ 309
>gi|297741511|emb|CBI32643.3| unnamed protein product [Vitis vinifera]
Length = 1400
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 50/76 (65%), Positives = 61/76 (80%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S+R+++ G Q+ CLA+R+GFV NVYVGS LISF KCGE Y++FE+MPV+NVVSW
Sbjct: 984 CASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKCGELCHAYRVFEEMPVKNVVSW 1043
Query: 66 TAIIAAFAQEWEVDMC 81
TAIIA FAQEW VD C
Sbjct: 1044 TAIIAGFAQEWLVDGC 1059
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G C + GF + V+V ++LIS KCG D Y +FE+M +++
Sbjct: 1082 LSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDGKDI 1141
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA AQ
Sbjct: 1142 VSWNSMIAGHAQ 1153
>gi|357508177|ref|XP_003624377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499392|gb|AES80595.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 487
Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 60/76 (78%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CGS R+ GG QY CLA+R GF+ANVYVGSSLIS +CG D Y++F++M VRNVVSW
Sbjct: 118 CGSKRDFYGGIQYHCLAIRIGFIANVYVGSSLISLYSRCGLLGDAYRVFDEMSVRNVVSW 177
Query: 66 TAIIAAFAQEWEVDMC 81
TAIIA FAQEW VDMC
Sbjct: 178 TAIIAGFAQEWRVDMC 193
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G C ++ GF ++V ++LI+ KCG +D +FE M ++V
Sbjct: 216 LSACMGSGALGHGRGVHCQIIQMGFHCYLHVENALIAMYSKCGVIVDALYIFENMVSKDV 275
Query: 63 VSWTAII 69
V+W ++I
Sbjct: 276 VTWNSMI 282
>gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Glycine max]
Length = 501
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/79 (67%), Positives = 63/79 (79%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SCGS R++ GG QY CLA+ +GFVA+VYVGSSLIS +C D ++FE+MPVRNV
Sbjct: 114 VSSCGSKRDLWGGIQYHCLAITTGFVASVYVGSSLISLYSRCAFLGDACRVFEEMPVRNV 173
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTAIIA FAQEW VDMC
Sbjct: 174 VSWTAIIAGFAQEWHVDMC 192
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G C +R GF + +++ ++LIS KCG D +FE M R+V
Sbjct: 215 LSACMGSGALGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAIDDALHIFENMVSRDV 274
Query: 63 VSWTAIIAAFAQ 74
V+W +I+ +AQ
Sbjct: 275 VTWNTMISGYAQ 286
>gi|359481497|ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Vitis vinifera]
Length = 510
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/76 (65%), Positives = 61/76 (80%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S+R+++ G Q+ CLA+R+GFV NVYVGS LISF KCGE Y++FE+MPV+NVVSW
Sbjct: 123 CASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKCGELCHAYRVFEEMPVKNVVSW 182
Query: 66 TAIIAAFAQEWEVDMC 81
TAIIA FAQEW VD C
Sbjct: 183 TAIIAGFAQEWLVDGC 198
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C + GF + V+V ++LIS KCG D Y +FE+M +++VSW ++IA AQ
Sbjct: 237 HCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDGKDIVSWNSMIAGHAQ 292
>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 59/72 (81%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R++ GG Q+ CLA+ SGF++N YVGSSLI+ GKCG+ + +K+F +MPVRNVV+WTAII
Sbjct: 120 RDLPGGIQFHCLAITSGFISNSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAII 179
Query: 70 AAFAQEWEVDMC 81
+ FAQE +VD+C
Sbjct: 180 SGFAQECQVDVC 191
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + GT C ++ GF + ++V ++LIS K G D + +F + +++
Sbjct: 214 LSACTGSGALGQGTSAHCQIIQMGFHSYLHVANALISMYCKSGSVHDAFYIFNNIYSKDI 273
Query: 63 VSWTAIIAAFAQ 74
VSW ++I+ +AQ
Sbjct: 274 VSWNSMISGYAQ 285
>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/79 (54%), Positives = 59/79 (74%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SCG R+ R G+ + CLA++ GF+++VY+GSSL+ GE + YK+FE+MP RNV
Sbjct: 127 VRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNV 186
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FAQEW VD+C
Sbjct: 187 VSWTAMISGFAQEWRVDIC 205
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G C + G + +++ +SLIS KCG+ D +++F++ ++V
Sbjct: 228 LSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDV 287
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA +AQ
Sbjct: 288 VSWNSMIAGYAQ 299
>gi|297823557|ref|XP_002879661.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325500|gb|EFH55920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 58/79 (73%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SCGS R+ R G+ + CLA++ GF+++VY+GSSL+ GE + +K+F +MP NV
Sbjct: 127 VRSCGSNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAHKVFAEMPDNNV 186
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FAQEW VD+C
Sbjct: 187 VSWTAMISGFAQEWRVDIC 205
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G C ++ G + +++ +SLIS KCG+ D +++F++ ++V
Sbjct: 228 LSACTGSGALGQGRSVHCQTLQMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDV 287
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA +AQ
Sbjct: 288 VSWNSMIAGYAQ 299
>gi|357127969|ref|XP_003565649.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Brachypodium distachyon]
Length = 567
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C ++IRGG Q L V+ G+ V G+SLIS +C + + Y++F+ MPVRNV
Sbjct: 187 ISFCAVKQSIRGGGQLHALLVKVGYDLAVLSGTSLISLYARCYQLENAYQVFQNMPVRNV 246
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ +AQ+ +V+ C
Sbjct: 247 VSWTALISGYAQDNQVEPC 265
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF V++ ++LIS KCG + +F+ + +++VSW ++I ++Q
Sbjct: 300 GRSVHGLELRMGFDLCVHILNALISMYAKCGSIDEAQFIFQSIACKDLVSWNSMIFGYSQ 359
Query: 75 EWEVDMCYTFI 85
+ C +
Sbjct: 360 YGLAEHCLKLL 370
>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g01510-like [Cucumis
sativus]
Length = 816
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + +I G Q L +RSGF++NVY GS+L+ KCG D K F +MP RN VS
Sbjct: 452 ACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVS 511
Query: 65 WTAIIAAFAQEWEVD 79
W A+I+A+AQ VD
Sbjct: 512 WNALISAYAQNGNVD 526
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S+ N+R G Q C A+ G V ++L+ KC + + K+F+ + ++ V WTA
Sbjct: 354 SSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTA 413
Query: 68 IIAAFAQE 75
+I+A+ Q+
Sbjct: 414 MISAYVQK 421
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q +++ FV NV+VG++L+ + K + +V K+F +MP + +S+ +I ++A
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYA 318
>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Cucumis sativus]
Length = 816
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + +I G Q L +RSGF++NVY GS+L+ KCG D K F +MP RN VS
Sbjct: 452 ACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVS 511
Query: 65 WTAIIAAFAQEWEVD 79
W A+I+A+AQ VD
Sbjct: 512 WNALISAYAQNGNVD 526
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S+ N+R G Q C A+ G V ++L+ KC + + K+F+ + ++ V WTA
Sbjct: 354 SSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTA 413
Query: 68 IIAAFAQE 75
+I+A+ Q+
Sbjct: 414 MISAYVQK 421
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q +++ FV NV+VG++L+ + K + +V K+F +MP + +S+ +I ++A
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYA 318
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG R G CLAV++G+ +V+VGSSL+ KCGE D +F++MP RNVVS
Sbjct: 135 ACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVS 194
Query: 65 WTAIIAAFAQ 74
W+ +I +AQ
Sbjct: 195 WSGMIYGYAQ 204
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S+ + G L ++ F ++ +VGS+LIS KCG Y++F+++P RN+ W
Sbjct: 237 CSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLW 296
Query: 66 TAIIAAFAQ 74
+++ A AQ
Sbjct: 297 NSMLIACAQ 305
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
+R++R G Q ++ G V +LI+ K + ++F++ P ++ +W+++
Sbjct: 38 SRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSV 97
Query: 69 IAAFAQ 74
I+AFAQ
Sbjct: 98 ISAFAQ 103
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG R G CLAV++G+ +V+VGSSL+ KCGE D +F++MP RNVVS
Sbjct: 135 ACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVS 194
Query: 65 WTAIIAAFAQ 74
W+ +I +AQ
Sbjct: 195 WSGMIYGYAQ 204
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S+ + G L ++ F ++ +VGS+LIS KCG Y++F+++P RN+ W
Sbjct: 237 CSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLW 296
Query: 66 TAIIAAFAQ 74
+++ A AQ
Sbjct: 297 NSMLIACAQ 305
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
+R++R G Q ++ G V +LI+ K + ++F++ P ++ +W+++
Sbjct: 38 SRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSV 97
Query: 69 IAAFAQ 74
I+AFAQ
Sbjct: 98 ISAFAQ 103
>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SCG G CL++++G+ A+V+VGSSL+ KCGE + KMF++MP+RNVV+
Sbjct: 125 SCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVT 184
Query: 65 WTAIIAAFAQEWE 77
W+ ++ +AQ E
Sbjct: 185 WSGMMYGYAQMGE 197
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C ++ + G Q Q L ++S F ++ +VGSSL+S KCG+ Y++F+++P+RN+
Sbjct: 224 ISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNL 283
Query: 63 VSWTAIIAAFAQ 74
W A++ A AQ
Sbjct: 284 GIWNAMLKACAQ 295
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
S +R+I G Q V+SG V ++LI+F K D + FE P ++ +
Sbjct: 24 SSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATT 83
Query: 65 WTAIIAAFAQ 74
W++II+ FAQ
Sbjct: 84 WSSIISCFAQ 93
>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C S ++ G Q + SG+++NV+ GS+L+ KCG D +MF++MPVRN
Sbjct: 508 VRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNS 567
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW A+I+A+AQ + D
Sbjct: 568 VSWNALISAYAQNGDGD 584
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N+ G Q + + ++ + VG+SL+ KCGE + ++F + +++ V WTA+I+
Sbjct: 415 NLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMIS 474
Query: 71 AFAQE 75
++ Q+
Sbjct: 475 SYVQK 479
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G Q V+ FV NV+V ++L+ F K ++ K+F +MP + +S+ ++
Sbjct: 314 DIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVT 373
Query: 71 AFA 73
+A
Sbjct: 374 CYA 376
>gi|242049240|ref|XP_002462364.1| hypothetical protein SORBIDRAFT_02g024422 [Sorghum bicolor]
gi|241925741|gb|EER98885.1| hypothetical protein SORBIDRAFT_02g024422 [Sorghum bicolor]
Length = 520
Score = 71.2 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 53/79 (67%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q+ L V+ G+V+++ +GSSLISF +CG+ +++F+ M +N
Sbjct: 140 LSYCADGKTLTAGVQFHALLVKVGYVSSIPIGSSLISFYSRCGQLEIAHRVFQNMTAKNT 199
Query: 63 VSWTAIIAAFAQEWEVDMC 81
V+WTA+I+ +AQ+ +V+ C
Sbjct: 200 VTWTALISGYAQDNQVEPC 218
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L +R GF + V+V ++LIS KCG + +FE + +++VSW ++I ++Q
Sbjct: 253 GKSVQALQMRMGFDSYVHVSNALISMYAKCGSIGEARAVFESITCKDLVSWNSLIFGYSQ 312
Query: 75 EWEVDMC 81
+ C
Sbjct: 313 HGLAEHC 319
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG IR G Q + GF ++YV +SL+ F G CGE+ + K+F++MPVR+VVS
Sbjct: 115 ACGKFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVS 174
Query: 65 WTAIIAAFAQ 74
WT II F +
Sbjct: 175 WTGIITGFTR 184
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + ++ G A+R G +VYVGSSLISF GKC E + K+F+++P RNV
Sbjct: 112 IKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNV 171
Query: 63 VSWTAIIAAFA 73
VSWTA++A +A
Sbjct: 172 VSWTAMVAGYA 182
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG IR G Q + + GF ++YV +SL+ F G CGE+ + K+F +MPVR+VVS
Sbjct: 115 ACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVS 174
Query: 65 WTAIIAAFAQ 74
WT II F +
Sbjct: 175 WTGIITGFTR 184
>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g52630
gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
Length = 588
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC G CL++++G+ A+V+VGSSL+ KCGE + KMF++MP RNVV+
Sbjct: 125 SCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVT 184
Query: 65 WTAIIAAFAQEWE 77
W+ ++ +AQ E
Sbjct: 185 WSGMMYGYAQMGE 197
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C ++ + G Q L+++S F ++ +VGSSL+S KCG Y++F ++PV+N+
Sbjct: 224 ISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNL 283
Query: 63 VSWTAIIAAFAQ 74
W A++ A+AQ
Sbjct: 284 GIWNAMLKAYAQ 295
>gi|297817888|ref|XP_002876827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322665|gb|EFH53086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G +I GG Q CLA++SGF VYVG+SL+S +CGE I +MFEK+P ++VV++
Sbjct: 138 GGCGDIEGGMQMHCLAMKSGFEMEVYVGTSLVSMYSRCGEWILAARMFEKVPHKSVVTYN 197
Query: 67 AIIAAFAQ 74
A I+ +
Sbjct: 198 AFISGLME 205
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN 61
+T+C S N++ G Q L +++ F + VG++LI KC Y +F ++ RN
Sbjct: 236 ITACASLLNLQYGRQLHGLVMKTEFQFDTMVGTALIDMYSKCRCWKSAYSVFTELKDTRN 295
Query: 62 VVSWTAIIAA 71
++SW ++I+
Sbjct: 296 LISWNSVISG 305
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G V++GF +V+ ++L+S K + D K+ ++MP R +
Sbjct: 36 LKSCAKLGDVVQGRILHAHVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGI 95
Query: 63 VSWTAIIAAFAQ 74
S A ++ +
Sbjct: 96 ASVNAAVSGLLE 107
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G Q +RSG ++NV+ GS+L+ KCG + +MF++MPVRN VS
Sbjct: 451 ACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVS 510
Query: 65 WTAIIAAFAQ 74
W A+I+A+AQ
Sbjct: 511 WNALISAYAQ 520
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N+ G Q A+ + ++ V VG+SL+ KC + + ++F + ++ V WTA+I+
Sbjct: 356 NLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALIS 415
Query: 71 AFAQE 75
+ Q+
Sbjct: 416 GYVQK 420
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G Q V+ FV NV+V ++L+ F K ++ K+F +MP + +S+ +I
Sbjct: 255 DIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLIT 314
Query: 71 AFAQEWEVD 79
A V+
Sbjct: 315 CCAWNGRVE 323
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G LAV++ V N++VGS+L+ GKCG D + F++MP RN+
Sbjct: 216 LSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNL 275
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
V+W A+I +A + + DM T
Sbjct: 276 VTWNAMIGGYAHQGQADMAVTL 297
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ GS R+ G Q LAV++G +++V+VG S K G + KMF++MP RN+ +
Sbjct: 117 ASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT 176
Query: 65 WTAIIAAFAQEWEVDMCYTFIV 86
W A ++ E D T +
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFI 198
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ + + G Q+ CL+V+ G N++ GSSLI KCG+ D +K + MP R+V
Sbjct: 426 LSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSV 485
Query: 63 VSWTAIIAAFA 73
VS A+IA +A
Sbjct: 486 VSVNALIAGYA 496
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A++ GF +++YV SSLI+ GKC D ++F+ + +N++ W A++ ++Q
Sbjct: 243 AIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQ 295
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q ++ F +N++V ++LI K G + K FE M R+
Sbjct: 325 LSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDH 384
Query: 63 VSWTAIIAAFAQE 75
+SW AII + QE
Sbjct: 385 ISWNAIIVGYVQE 397
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RN 61
+ +C ++ G + L +GF + S+L+ KCG+ ++FE++ ++
Sbjct: 629 LQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKD 688
Query: 62 VVSWTAIIAAFAQ 74
V+SW ++I FA+
Sbjct: 689 VISWNSMIVGFAK 701
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +N+ G ++SG + + +LI KC +F P ++
Sbjct: 54 LSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHL 113
Query: 63 --VSWTAIIAAFAQ 74
VSWTA+I+ + Q
Sbjct: 114 HTVSWTALISGYVQ 127
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++SGF++NV+ GS+L+ KCG D + F++MP RN+VSW A+I+A+AQ
Sbjct: 431 GKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQ 490
Query: 75 EWEVD 79
E +
Sbjct: 491 NGEAE 495
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +++ FV NV+V ++L+ F K ID K+F++MP ++ VS+ II+ +A
Sbjct: 229 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA- 287
Query: 75 EWEVDMCYTF 84
W+ Y F
Sbjct: 288 -WDGKHKYAF 296
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + + + + VG+SL+ KCG+ + +F + R+ V WTA+I+A+ Q
Sbjct: 330 GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQ 389
Query: 75 E 75
+
Sbjct: 390 K 390
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G LAV++ V N++VGS+L+ GKCG D + F++MP RN+
Sbjct: 317 LSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNL 376
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
V+W A+I +A + + DM T
Sbjct: 377 VTWNAMIGGYAHQGQADMAVTL 398
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ GS R+ G Q LAV++G +++V+VG S K G + KMF++MP RN+ +
Sbjct: 117 ASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT 176
Query: 65 WTAIIAAFAQEWEVDMCYTFIV 86
W A ++ E D T +
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFI 198
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G Q ++SGF A+V V + LI F GKC + +F + N
Sbjct: 216 LNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPND 275
Query: 63 VSWTAIIAAFAQ-EWEVDMCYTFI 85
VSW ++I ++ Q + E C F+
Sbjct: 276 VSWCSMIVSYVQNDEEEKACLVFL 299
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++SGF++NV+ GS+L+ KCG D + F++MP RN+VSW A+I+A+AQ
Sbjct: 471 GKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQ 530
Query: 75 EWEVD 79
E +
Sbjct: 531 NGEAE 535
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +++ FV NV+V ++L+ F K ID K+F++MP ++ VS+ II+ +A
Sbjct: 269 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA- 327
Query: 75 EWEVDMCYTF 84
W+ Y F
Sbjct: 328 -WDGKHKYAF 336
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + + + + VG+SL+ KCG+ + +F + R+ V WTA+I+A+ Q
Sbjct: 370 GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQ 429
Query: 75 E 75
+
Sbjct: 430 K 430
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + + GT +RSGFV N+ V SSLI+ KCG +D +++FE+ RNVV
Sbjct: 342 SCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVC 401
Query: 65 WTAIIAAFAQE----WEVDM 80
WTAIIAA Q W V++
Sbjct: 402 WTAIIAACQQHGHANWVVEL 421
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C T G Q L + GF+A V+V S+L+ KC + + K+FE+MPVRN+
Sbjct: 137 LSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNL 196
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
VSW +I F Q D F
Sbjct: 197 VSWNTMIVGFLQNKLYDQAIFF 218
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C + N+ G Q +A++ G VY+ +SL GKCG DV K+F R+VV
Sbjct: 240 SACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVV 299
Query: 64 SWTAIIAAFA--QEWEVDMCYTF 84
+W +I A+ +E D C +F
Sbjct: 300 TWNIMIMAYVYNHNYE-DACNSF 321
>gi|116830405|gb|ABK28160.1| unknown [Arabidopsis thaliana]
Length = 614
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G +I GG Q CLA++SGF VYVG+SL+S +CGE + +MFEK+P ++VV++
Sbjct: 140 GGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYN 199
Query: 67 AIIAAFAQ 74
A I+ +
Sbjct: 200 AFISGLME 207
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN 61
+T+C S N++ G Q L ++ F VG++LI KC Y +F ++ RN
Sbjct: 238 ITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRN 297
Query: 62 VVSWTAIIAA 71
++SW ++I+
Sbjct: 298 LISWNSVISG 307
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G V++GF +V+ ++L+S K + D K+ ++MP R +
Sbjct: 38 LKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGI 97
Query: 63 VSWTAIIAAFAQ 74
S A ++ +
Sbjct: 98 ASVNAAVSGLLE 109
>gi|91805385|gb|ABE65422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G +I GG Q CLA++SGF VYVG+SL+S +CGE + +MFEK+P ++VV++
Sbjct: 140 GGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYN 199
Query: 67 AIIAAFAQ 74
A I+ +
Sbjct: 200 AFISGLME 207
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN 61
+T+C S N++ G Q L ++ F VG++LI KC Y +F ++ RN
Sbjct: 238 ITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRN 297
Query: 62 VVSWTAIIAA 71
++SW ++I+
Sbjct: 298 LISWNSVISG 307
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G V++GF +V+ ++L+S K + D K+ ++MP R +
Sbjct: 38 LKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGI 97
Query: 63 VSWTAIIAAFAQ 74
S A ++ +
Sbjct: 98 ASVNAAVSGLLE 109
>gi|15227029|ref|NP_178378.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546778|sp|Q1PFA6.2|PP144_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02750
gi|2947066|gb|AAC05347.1| hypothetical protein [Arabidopsis thaliana]
gi|330250526|gb|AEC05620.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G +I GG Q CLA++SGF VYVG+SL+S +CGE + +MFEK+P ++VV++
Sbjct: 140 GGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYN 199
Query: 67 AIIAAFAQ 74
A I+ +
Sbjct: 200 AFISGLME 207
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN 61
+T+C S N++ G Q L ++ F VG++LI KC Y +F ++ RN
Sbjct: 238 ITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRN 297
Query: 62 VVSWTAIIAA 71
++SW ++I+
Sbjct: 298 LISWNSVISG 307
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G V++GF +V+ ++L+S K + D K+ ++MP R +
Sbjct: 38 LKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGI 97
Query: 63 VSWTAIIAAFAQ 74
S A ++ +
Sbjct: 98 ASVNAAVSGLLE 109
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q A+RSGF +N VG++L++ KCG YK+FE+MP +NVV+
Sbjct: 331 ACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVA 390
Query: 65 WTAIIAAFAQ 74
W AII+ ++Q
Sbjct: 391 WNAIISGYSQ 400
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
MPV C + G Q C A+RSG ++V V + L++ KCG +K+FE+MP+R
Sbjct: 228 MPV--CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR 285
Query: 61 NVVSWTAIIAAFA 73
+V SW AII ++
Sbjct: 286 DVASWNAIIGGYS 298
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS +++ G + + GF ++V VG++L S KCG + ++F++MP R+V
Sbjct: 127 IKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDV 186
Query: 63 VSWTAIIAAFAQ 74
VSW AIIA ++Q
Sbjct: 187 VSWNAIIAGYSQ 198
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q +RSGF +NV VG+ L+ KCG K+FE+MP ++VVS
Sbjct: 432 ACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS 491
Query: 65 WTAIIAAFA 73
WT +I A+
Sbjct: 492 WTTMILAYG 500
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++ GT + +++GF +V VG++L++ KCG +D K+F+K+P RNVVSWT++I+
Sbjct: 263 SLEQGTLLHSVIMKAGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNVVSWTSVIS 322
Query: 71 AFAQEWEVDM---CY 82
A+AQ E + CY
Sbjct: 323 AYAQAGEPERALECY 337
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +I G V+SG ++ + LI KCG D Y++F+ M VR+VVSW
Sbjct: 359 CAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVRDVVSW 418
Query: 66 TAIIAAFAQ 74
T +I + Q
Sbjct: 419 TTLIEGWVQ 427
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + R++ G + VR G ++ +G++LI KCG +++F++M R++V+W
Sbjct: 160 CSTLRSLEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDIVTW 219
Query: 66 TAIIAAFAQEWEVDMCYTF 84
++ A+ D + F
Sbjct: 220 NIMVGGAARNGYFDEAFEF 238
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 49/72 (68%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ C A+ SG ++ + V ++LI+ GKCG + +++F +M +R+
Sbjct: 378 ISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDE 437
Query: 63 VSWTAIIAAFAQ 74
VSWTA++A +AQ
Sbjct: 438 VSWTALLAGYAQ 449
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CGS + G Q +R+ NV+VGS+L+ KC +F++MP +NV
Sbjct: 277 LTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNV 336
Query: 63 VSWTAIIAAFAQ 74
+SWTA++ + Q
Sbjct: 337 ISWTAMLVGYGQ 348
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R + G Q ++ GF ++V+VGS L+ K G D + F++MP RNVV
Sbjct: 148 CSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMC 207
Query: 66 TAIIAAFAQ 74
+I +
Sbjct: 208 NTMITGLMR 216
>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
Length = 698
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q Q AV+SG V NV+ S+L+ KCG D ++F+ MPVRN VSW A+IA +A+
Sbjct: 114 GAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAE 173
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC +R G Q L ++SGF +N +V SSLI KCG D K FE+ + V
Sbjct: 412 SCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVP 471
Query: 65 WTAIIAAFAQ 74
W +++ +AQ
Sbjct: 472 WNSMMFGYAQ 481
>gi|255543567|ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547857|gb|EEF49349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G Q +RSGF +NVY GS+L+ KCG + + F++MP RNV+SW A+I+
Sbjct: 461 SISLGKQLHSYLIRSGFWSNVYSGSALVDMYAKCGSVKEAIRTFKEMPGRNVISWNALIS 520
Query: 71 AFAQ 74
A+AQ
Sbjct: 521 AYAQ 524
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +I G Q AV+ G V NV+VG+SL+ F K D +K+F KMP + VS
Sbjct: 253 ACIGLDDIIFGQQIHGYAVKMGLVWNVFVGNSLLDFYSKHDCVNDAWKLFSKMPELDGVS 312
Query: 65 WTAIIAAFA 73
+ +I A++
Sbjct: 313 YNVMITAYS 321
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+T +++ G Q A+ +G V V +SL+ KCG + ++F K+ ++ V WT
Sbjct: 356 GNTLDLQMGQQLHSHAIVTGADLEVLVANSLVDMYAKCGRSEYAERIFVKLSSKSTVPWT 415
Query: 67 AIIAAFAQE 75
A+I+A Q+
Sbjct: 416 ALISANVQK 424
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 49/72 (68%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ G+Q+ A+ SG + V V +SL++ GKCG+ D ++F +M VR+
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437
Query: 63 VSWTAIIAAFAQ 74
VSWTA+++A+AQ
Sbjct: 438 VSWTAMVSAYAQ 449
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG I G Q +R+ F ++YVGS+LI KC +F++M +NVVS
Sbjct: 279 ACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 338
Query: 65 WTAIIAAFAQ 74
WTA++ + Q
Sbjct: 339 WTAMVVGYGQ 348
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 48/72 (66%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ CLA+ SG + + V ++L++ GKCG D +++F++M +
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439
Query: 63 VSWTAIIAAFAQ 74
VSWTA+++ +AQ
Sbjct: 440 VSWTALVSGYAQ 451
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ + G Q +R+ + NV+VGS+L+ KC +F +M +N+
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 339 ISWTALIVGYGQ 350
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G Q+ C +R GF AN +VGS L+ K D + F+++ +NVV + +I
Sbjct: 159 GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGL 216
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ CLA+ SG + + V ++L++ GKCG D +++F++M +
Sbjct: 386 ISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ +AQ
Sbjct: 446 VSWTALVTGYAQ 457
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ + G Q R+ + NV+VGS+L+ KC +F +M RN+
Sbjct: 285 LTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNI 344
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 345 ISWTAMIVGYGQ 356
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 48/70 (68%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++R G L+ +GF++NV+VG++L++ +CG D K+F++MPV +VVS
Sbjct: 136 ACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVS 195
Query: 65 WTAIIAAFAQ 74
W +II ++A+
Sbjct: 196 WNSIIESYAK 205
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
P S G TR++ G Q+ AV S + N++VG+ L+ K G + +F MPV++
Sbjct: 238 PCASVG-TRSL--GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKD 294
Query: 62 VVSWTAIIAAFAQ 74
VVSW A++A ++Q
Sbjct: 295 VVSWNAMVAGYSQ 307
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C S + G Q A+R+ A ++V + LI KCG+ D +F+ M +N
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKN 543
Query: 62 VVSWTAIIAAFA 73
V+WT+++ +
Sbjct: 544 EVTWTSLMTGYG 555
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + R GT++Q L +SGF +N +GS+LI F KCG + Y++FE M ++VS
Sbjct: 125 SCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVS 184
Query: 65 WTAIIAAFAQ 74
WT ++++F +
Sbjct: 185 WTMMVSSFVE 194
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C S R++R G ++ GF ++++ ++L+S GKC + ++F++MP R+V
Sbjct: 23 VSFCNS-RSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDV 81
Query: 63 VSWTAIIAAFAQ 74
SWT +++A+ +
Sbjct: 82 ASWTMLMSAYGK 93
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C S + G Q V +G +V VG+SL+ KC I D + F + N
Sbjct: 324 LNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPN 383
Query: 62 VVSWTAIIAAFAQ 74
V+SWT++IA F++
Sbjct: 384 VISWTSLIAGFSE 396
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C +V+SG + + V + L+ GKCG D ++ F ++ + VSW +I A
Sbjct: 539 GKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLAS 598
Query: 75 EWEV 78
V
Sbjct: 599 NGHV 602
>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
Length = 977
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG G AV++G+ +V+VGSS++ KCGE D KMF++MP RNVVS
Sbjct: 19 ACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVVS 78
Query: 65 WTAIIAAFAQEWE 77
W+ +I ++Q E
Sbjct: 79 WSGMIYGYSQMGE 91
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V CG++ + G Q L +++ + ++ +VGSSLIS KCG D Y +F ++P+RN+
Sbjct: 118 VRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNL 177
Query: 63 VSWTAIIAAFAQ 74
W A++ A AQ
Sbjct: 178 GMWNAMLIACAQ 189
>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 556
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + + GT +RSGFV N+ V SSLI+ KCG +D +++FE+ RNVV
Sbjct: 194 SCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVC 253
Query: 65 WTAIIAAFAQE----WEVDM 80
WTAIIAA Q W V++
Sbjct: 254 WTAIIAACQQHGHANWVVEL 273
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C + N+ G Q +A++ G VY+ +SL GKCG DV K+F R+VV
Sbjct: 92 SACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVV 151
Query: 64 SWTAIIAAFA--QEWEVDMCYTF 84
+W +I A+ +E D C +F
Sbjct: 152 TWNIMIMAYVYNHNYE-DACNSF 173
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C T G Q L + GF+A V+V S+L+ KC + + K+FE+MP +
Sbjct: 17 LSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPTLLL 76
Query: 63 VSWTAI 68
+ TA+
Sbjct: 77 ENLTAL 82
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S I+ GTQ CL V+ GF ++VGS+L KCGE D K FE+MP ++
Sbjct: 183 LQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDA 242
Query: 63 VSWTAIIAAFAQ 74
V WT++I F +
Sbjct: 243 VLWTSMIDGFVK 254
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + T+ + G Q + +R G + N ++ + ++ KCGE K+F+KM RN+
Sbjct: 82 IQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNM 141
Query: 63 VSWTAIIAAFAQ 74
VSWT+II FA
Sbjct: 142 VSWTSIITGFAH 153
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G+Q V+ F + +V S+L+ GKCG ++F+++ +
Sbjct: 386 IKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDE 445
Query: 63 VSWTAIIAAFAQ 74
++W ++ F+Q
Sbjct: 446 IAWNTLVGVFSQ 457
>gi|218192688|gb|EEC75115.1| hypothetical protein OsI_11295 [Oryza sativa Indica Group]
Length = 790
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + R I G Q C AVR GF N+Y+ ++L+S CG D K+F+ PV + VS
Sbjct: 112 ACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVS 171
Query: 65 WTAIIAAFAQEWEVD 79
W I+AA+ Q +VD
Sbjct: 172 WNTILAAYVQAEDVD 186
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ CLA+ SG + + V ++L++ GKCG D +++F++M +
Sbjct: 386 ISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ +AQ
Sbjct: 446 VSWTALVTGYAQ 457
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ + G Q R+ + NV+VGS+L+ KC +F +M RN+
Sbjct: 285 LTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNI 344
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 345 ISWTAMIVGYGQ 356
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ CLA+ SG + + V ++L++ GKCG D +++F++M +
Sbjct: 386 ISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ +AQ
Sbjct: 446 VSWTALVTGYAQ 457
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ G Q R+ + NV+VGS+L+ KC +F +M RN+
Sbjct: 285 LTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNI 344
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 345 ISWTAMIVGYGQ 356
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 48/72 (66%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ C+A+ SG + V S+L++ GKCG D +++F++MP +
Sbjct: 389 ISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQ 448
Query: 63 VSWTAIIAAFAQ 74
VS+TA+++ +AQ
Sbjct: 449 VSYTALVSGYAQ 460
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ G Q +R+ + N++VGS+L+ KC +F +M +N+
Sbjct: 288 LTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNI 347
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 348 ISWTAMIVGYGQ 359
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G C ++R GF ++YVGS+L+ KCG D +FE MP RNVVSW A+I +A
Sbjct: 311 GRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAM 370
Query: 75 EWEVD 79
E +
Sbjct: 371 HGEAE 375
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
G + +V SSL+ + G D + + MP R VV W+A+IAA A + +
Sbjct: 50 GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAE 103
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + ++ G Q C V+ + +V++G+SL+ KCGE ID ++F+ M RN
Sbjct: 174 LKACGEKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNT 233
Query: 63 VSWTAIIAAFAQE 75
V+WT+IIA +A++
Sbjct: 234 VTWTSIIAGYARK 246
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS G + ++SG +NVY+GS+L+ F KCGE K+ ++M RNV
Sbjct: 275 LRACGSISASLTGREVHAQIIKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNV 334
Query: 63 VSWTAIIAAF 72
VSWTA+I+ +
Sbjct: 335 VSWTAMISGY 344
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C + ++ G A ++ +NVYVGS+LI KCG D ++F+ MP RN
Sbjct: 375 ALKACANLESVLQGKLIHSFANKTPASSNVYVGSALIYMYSKCGYLSDAIQVFDSMPERN 434
Query: 62 VVSWTAIIAAFAQ 74
++SW +I ++A+
Sbjct: 435 LISWKTMILSYAR 447
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+YV ++LIS + GE I+ K+F++M R VVSWTA+I +
Sbjct: 1 MYVDNNLISVYARLGELIEARKVFDQMHERCVVSWTAMINGY 42
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q V+ + N+ V S+++SF +CG+ + F ++ ++VV W
Sbjct: 77 CSKRLDFELGRQIHACVVKGNW-RNLIVDSAIVSFYAQCGDLESAFCAFFQVREKDVVCW 135
Query: 66 TAIIAAFAQE 75
T++I+A +Q+
Sbjct: 136 TSVISACSQQ 145
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ CLA+ SG + + V ++L++ GKCG D +++F++M +
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ +AQ
Sbjct: 440 VSWTALVTGYAQ 451
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ + G Q +R+ + NV+VGS+L+ KC F +M +N+
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 339 ISWTALIVGYGQ 350
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G Q+ C +R GF N +VGS L+ K G D ++F++M +NVV + +I
Sbjct: 159 GRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGL 216
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CG + G + L SGFV +V+VGSSLI KCG+ D K+F+++P RN
Sbjct: 238 LSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNT 297
Query: 63 VSWTAIIAAFAQ 74
V WT++IA +AQ
Sbjct: 298 VCWTSMIAGYAQ 309
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR 60
+ +C + G + ++ G +V+V ++LIS CG +F+ +P VR
Sbjct: 134 LKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVR 193
Query: 61 NVVSWTAIIAAFAQ 74
+VVSW ++I+ + Q
Sbjct: 194 DVVSWNSMISGYLQ 207
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 47/70 (67%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGSTRN+ G + +++ +N+Y+GS+L+ F KC E+ K+ + MP+R+V
Sbjct: 372 LRACGSTRNLLMGKEVHAQIMKNSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDV 431
Query: 63 VSWTAIIAAF 72
VSWTAII+ +
Sbjct: 432 VSWTAIISGY 441
Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + + G Q ++ F +V++G+SL+ KCGE +D K+F+ M RN
Sbjct: 271 LKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNT 330
Query: 63 VSWTAIIAAFAQ 74
V+WT+IIA +A+
Sbjct: 331 VTWTSIIAGYAR 342
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I G ++ ++NV+VGS+LI+ KCG + ++F+ MP RN+
Sbjct: 473 LKACAHLEAILQGKLIHSSVNKTLALSNVFVGSALINMYAKCGYVSEAIQVFDSMPQRNL 532
Query: 63 VSWTAIIAAFAQ 74
VSW A+I +A+
Sbjct: 533 VSWKAMIVGYAR 544
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 3 VTSCGSTRNIR--GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ SC + R +R ++CL + YV ++LIS + G+ ++ K+F+KMP R
Sbjct: 73 LQSCCTVREVRRVHAVVFKCLDN-----SVTYVNNNLISAYSRFGKLVEARKVFDKMPER 127
Query: 61 NVVSWTAIIAAFAQ 74
NVVSWTA++ +++
Sbjct: 128 NVVSWTAVVNGYSR 141
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q V+ + N+ V S+L+ F +CG+ + F++MP R+VV W
Sbjct: 174 CSKRLDFELGRQIHACIVKDNW-RNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVCW 232
Query: 66 TAIIAAFAQE 75
T +I A +Q+
Sbjct: 233 TTMITACSQQ 242
>gi|212722152|ref|NP_001132130.1| uncharacterized protein LOC100193547 [Zea mays]
gi|194693508|gb|ACF80838.1| unknown [Zea mays]
gi|413918286|gb|AFW58218.1| hypothetical protein ZEAMMB73_151558 [Zea mays]
Length = 552
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 51/79 (64%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q+ V+ G+V+++ +GSSLISF +C + +++F+ M ++
Sbjct: 158 LSYCADEKTLTTGVQFHAQLVKVGYVSSIPIGSSLISFYSRCSQLEIAHRIFQNMTAKST 217
Query: 63 VSWTAIIAAFAQEWEVDMC 81
V+WTA+I+ +AQ+ +V+ C
Sbjct: 218 VTWTALISGYAQDNQVEPC 236
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L +R GF + V+V ++LIS KCG + +FE + +++VSW ++I ++Q
Sbjct: 271 GKSVQALQMRMGFGSYVHVSNALISMYAKCGSIGEARAVFESITCKDLVSWNSLIFGYSQ 330
Query: 75 EWEVDMC 81
+ C
Sbjct: 331 HGLAEHC 337
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + SC +T + G Q R G NV+V S IS +CG D Y+MFE+M R
Sbjct: 127 LALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYR 186
Query: 61 NVVSWTAIIAAFAQ 74
+VVSW A+I+ FA
Sbjct: 187 DVVSWNAMISGFAH 200
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SCG + G + + R +++ + ++L+ CG + +F+ M R+VVS
Sbjct: 301 SCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVS 360
Query: 65 WTAIIAAFAQ 74
WT+II+A+ +
Sbjct: 361 WTSIISAYGR 370
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ CLA+ SG V V ++L++ GKCG D +++F++M +
Sbjct: 385 ISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 444
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ +AQ
Sbjct: 445 VSWTALVMGYAQ 456
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ + G Q R+ + NV+VGS+L+ KC +F +M +N+
Sbjct: 284 LTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNI 343
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 344 ISWTAMIVGYGQ 355
>gi|222631343|gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
Length = 490
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G C ++R GF ++YVGS+L+ KCG D +FE MP RNVVSW A+I +A
Sbjct: 311 GRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAM 370
Query: 75 EWEVD 79
E +
Sbjct: 371 HGEAE 375
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
G + +V SSL+ + G D + + MP R VV W+A+IAA A + +
Sbjct: 50 GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAE 103
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + R I G Q C AVR GF N+Y+ ++L+S CG D K+F+ PV + VS
Sbjct: 112 ACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVS 171
Query: 65 WTAIIAAFAQEWEVD 79
W I+AA+ Q +VD
Sbjct: 172 WNTILAAYVQAEDVD 186
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + R I G Q C AVR GF N+Y+ ++L+S CG D K+F+ PV + VS
Sbjct: 112 ACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVS 171
Query: 65 WTAIIAAFAQEWEVD 79
W I+AA+ Q +VD
Sbjct: 172 WNTILAAYVQAEDVD 186
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
M + SCG +R G + C A + GF +N +V +SLI K G D YK+F +M R
Sbjct: 115 MIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHER 174
Query: 61 NVVSWTAIIAAF 72
NVV WTAII +
Sbjct: 175 NVVVWTAIINGY 186
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G A G+ N++VG+ LI KCG + +F + +++
Sbjct: 312 LSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDI 371
Query: 63 VSWTAIIAAFA 73
+SW II A
Sbjct: 372 ISWNTIINGLA 382
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T S +N Q Q V G N +V + I+ C + K+F+K+P N
Sbjct: 16 ITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNT 75
Query: 63 VSWTAIIAAFAQ 74
+W A+ + Q
Sbjct: 76 ATWNAMFRGYLQ 87
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + +R G+ L +R GF +V VG+S + F GKC + K+F +MP RN VSW
Sbjct: 120 CSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSW 179
Query: 66 TAIIAAFAQEWEVD 79
TA++ A+ + E++
Sbjct: 180 TALVVAYVKSGELE 193
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G LAV++ +++VGS+L+ GKCG D ++F +MP RN+VSW A+I+ +A
Sbjct: 279 GRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAH 338
Query: 75 EWEVDMCYTF 84
+ +VDM T
Sbjct: 339 QGDVDMAMTL 348
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R + G Q L +RSGF +V V + +I GKC E +F M RN
Sbjct: 166 LNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNS 225
Query: 63 VSWTAIIAAFAQEWEVD-MCYTFIV 86
VSW ++AA Q E + C F++
Sbjct: 226 VSWCTMVAACEQNDEKEKACVVFLM 250
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
G Q +A++ G + + +VG S K G + ++F++MP RNV W A I+
Sbjct: 77 GKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYIS 132
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MPV--TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
+PV SC +T + G Q R G NV+V S IS +CG D Y+MFE+M
Sbjct: 15 LPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQ 74
Query: 59 VRNVVSWTAIIAAFAQ 74
R+VVSW A+I+ FA
Sbjct: 75 YRDVVSWNAMISGFAH 90
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SCG + G + + R +++ + ++L+ CG + +F+ M R+VVS
Sbjct: 191 SCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVS 250
Query: 65 WTAIIAAFAQ 74
WT+II+A+ +
Sbjct: 251 WTSIISAYGR 260
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q C ++ + ++++GS+L++ +CGE D +F+ MP RN
Sbjct: 557 LKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNT 616
Query: 63 VSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 617 ITWTSMISGYAQ 628
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + + G Q C V+ G+ +NV V S++ F +CG+ +F+KM R+V
Sbjct: 457 LKSCGERCDAKLGQQVHCCIVKGGW-SNVIVDSAIAHFYAQCGDVASASAIFDKMASRDV 515
Query: 63 VSWTAIIAAFAQ 74
+SWT +I A+ Q
Sbjct: 516 ISWTTMITAYVQ 527
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS +++ G + +++ N+ +GS+L+ F KCGE ++ E MP R+
Sbjct: 658 LSACGSLQSLYLGKELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDA 717
Query: 63 VSWTAIIAAF 72
+SWTA+I+ +
Sbjct: 718 ISWTALISGY 727
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + ++ +NV+VGSSLI +CG+ + ++F+ MP N+
Sbjct: 759 LKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVFDAMPEHNL 818
Query: 63 VSWTAIIAAFAQ 74
V+W II FAQ
Sbjct: 819 VTWKVIITGFAQ 830
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +R + +AVRS +V ++LIS + E D K+F++MP R+VVSW
Sbjct: 362 CGGADGVR---RVHAVAVRSLDSLGTFVANNLISAYARFDEVSDARKVFDEMPERSVVSW 418
Query: 66 TAIIAAF 72
TA++ A+
Sbjct: 419 TAMMNAY 425
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S R + G Q CL+V++G +Y GSSLI KCG +K+ MP R+V
Sbjct: 536 LSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSV 595
Query: 63 VSWTAIIAAFAQ 74
VS A+IA +AQ
Sbjct: 596 VSMNALIAGYAQ 607
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A++ G +NVYVGSSL+S KCG+ K+F+ + +NVV W A++ + Q
Sbjct: 353 ALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQ 405
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q + +++ F +N++VG++L+ K G D + FE + R+
Sbjct: 435 LSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDN 494
Query: 63 VSWTAIIAAFAQE 75
VSW II + QE
Sbjct: 495 VSWNVIIVGYVQE 507
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVV 63
+C +I+ GT+ L +GF ++ S+L+ KCG+ ++F++M ++V+
Sbjct: 741 ACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVI 800
Query: 64 SWTAIIAAFAQ 74
SW ++I FA+
Sbjct: 801 SWNSMIVGFAK 811
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q C V+ GF + Y +LI KC D +F+ +
Sbjct: 167 LSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDK 226
Query: 63 VSWTAIIAAF 72
VSWT++I +
Sbjct: 227 VSWTSMIGGY 236
>gi|297743473|emb|CBI36340.3| unnamed protein product [Vitis vinifera]
Length = 630
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++R G Q C R+G + +V S++I GKCG ++ K+F ++ +NVVSW
Sbjct: 439 CSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSW 498
Query: 66 TAIIAAFAQ 74
TAI+AA++Q
Sbjct: 499 TAILAAYSQ 507
>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 48/72 (66%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ C A+ SG ++++ V ++L++ GKCG D ++F +M R+
Sbjct: 381 ISSCANLASLEEGAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDE 440
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ +AQ
Sbjct: 441 VSWTALISGYAQ 452
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG +R G Q +RS NV+VGS+L+ KC +F++M +NV
Sbjct: 280 LTACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKNV 339
Query: 63 VSWTAIIAAFAQ 74
VSWTAI+ + Q
Sbjct: 340 VSWTAILVGYGQ 351
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ GF V+VGS L+ K G + K+F++MP RNVV +I +
Sbjct: 160 GRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHNTMITGLLK 219
>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ R ++ G + + SGF NV V SSL+ GKCG + ++F++M V+N
Sbjct: 262 LTACGNLRRLKQGKEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMSVKNS 321
Query: 63 VSWTAIIAAFAQ 74
VSW+A++ F Q
Sbjct: 322 VSWSALLGGFCQ 333
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + C VR G +V + S+L+ KCG +++F KM VRN+++
Sbjct: 362 ACAGLAAVRQGKEVHCQYVRRGGWRDVIIESALVDLYAKCGCIDFAHRIFTKMTVRNLIT 421
Query: 65 WTAIIAAFAQ 74
W ++I FAQ
Sbjct: 422 WNSMICGFAQ 431
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G + C+ + GF +N +GS+LI G+ E D ++F+++ +
Sbjct: 160 IKACTDLGTLMLGKCFHCVIMIRGFHSNHVIGSALIDLYGRNYELDDARRLFDELLEPDA 219
Query: 63 VSWTAIIAAFAQ 74
+ WT++I+A+ +
Sbjct: 220 ICWTSVISAYTR 231
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C + G Q V+SG + +VG+SL++ K + + ++F+ + R+
Sbjct: 58 LQTCTKVVSFNHGLQIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFDGLYFRD 117
Query: 62 VVSWTAIIAAFAQ 74
V+SWT++I + +
Sbjct: 118 VISWTSMITGYVK 130
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 48/72 (66%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ C A+ SG ++ + V ++LI+ GKCG D ++F++M R+
Sbjct: 378 ISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDE 437
Query: 63 VSWTAIIAAFAQ 74
VSWTA+++ +AQ
Sbjct: 438 VSWTALVSGYAQ 449
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG R ++ G + L +RSG+ NV+VGS+L+ KC +F++M +NV
Sbjct: 277 LTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNV 336
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ + Q
Sbjct: 337 VSWTAMLVGYGQ 348
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C TRN + CL ++S ++ ++LI+ K G +F+KMP N SW
Sbjct: 15 CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74
Query: 66 TAIIAAFAQEWEV 78
+++A+++ ++
Sbjct: 75 NTMLSAYSKSGDL 87
>gi|413941673|gb|AFW74322.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 1028
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S R + G + C A++ G V NV G+SL+ KCGE I ++F+++P +++
Sbjct: 347 ISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEIPEKDI 406
Query: 63 VSWTAIIAAFAQ 74
SW +++A +AQ
Sbjct: 407 FSWNSMVAGYAQ 418
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA----NVYVGSSLISFCGKCGENIDVYKMFEKMP 58
+ +C T ++ GT LA+R GF+A +V VG+S+++ KCGE F+ M
Sbjct: 172 LQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGRARAAFDMMG 231
Query: 59 VRNVVSWTAII--AAFAQEWE 77
R++ +W ++I + EWE
Sbjct: 232 QRDLCTWNSMIFGCCRSNEWE 252
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ ++ G + + +GF NV V SSL+ GKCG + ++F++MP++N
Sbjct: 270 LTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNS 329
Query: 63 VSWTAIIAAFAQ 74
VSW+A++ + Q
Sbjct: 330 VSWSALLGGYCQ 341
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + C +R G +V V S+L+ KCG +F++MPVRN+++
Sbjct: 369 TCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLIT 428
Query: 65 WTAIIAAFAQ 74
W ++I FAQ
Sbjct: 429 WNSMIGGFAQ 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C G Q ++SG + +VG+SL++ K G + + K+F+ + V++
Sbjct: 66 LQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKD 125
Query: 62 VVSWTAIIAAFAQ 74
V+SWT++I+ + +
Sbjct: 126 VISWTSMISGYVR 138
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ G + + + GF +N + S+LI G+ D ++F+++ +
Sbjct: 168 IKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDA 227
Query: 63 VSWTAIIAAFAQ 74
+ WT+II+A +
Sbjct: 228 ICWTSIISALTR 239
>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Vitis vinifera]
Length = 703
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++R G Q C R+G + +V S++I GKCG ++ K+F ++ +NVVSW
Sbjct: 240 CSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSW 299
Query: 66 TAIIAAFAQ 74
TAI+AA++Q
Sbjct: 300 TAILAAYSQ 308
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + G +SGF ++ VG++LI+ K G +K+F +M R+
Sbjct: 338 LNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDS 397
Query: 63 VSWTAIIAAFAQ 74
++W+A+I +
Sbjct: 398 ITWSAMICGLSH 409
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +I G Q CLA++ G + ++VGS+L KCG D K+FE+MP ++
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I +++
Sbjct: 173 VSWTAMIDGYSK 184
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + T+ +R G Q L + +G+ ++ + L++ KCGE K+F+ MP RN+
Sbjct: 12 IQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNL 71
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ +Q
Sbjct: 72 VSWTAMISGLSQ 83
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE-KMPVRNVV 63
+CG+ + + G V+ GF ++++VG++L K G+ +F RNVV
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275
Query: 64 SWTAIIAAFAQEWEVD 79
S+T +I + + +++
Sbjct: 276 SYTCLIDGYVETEQIE 291
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + GTQ ++ F + +V S L+ GKCG + F+++
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE 375
Query: 63 VSWTAIIAAFAQ 74
++W ++++ F Q
Sbjct: 376 IAWNSLVSVFGQ 387
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +I G Q CLA++ G + ++VGS+L KCG D K+FE+MP ++
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I +++
Sbjct: 173 VSWTAMIDGYSK 184
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + T+ +R G Q L + +G+ ++ + L++ KCGE K+F+ MP RN+
Sbjct: 12 IQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNL 71
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ +Q
Sbjct: 72 VSWTAMISGLSQ 83
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE-KMPVRNVV 63
+CG+ + + G V+ GF ++++VG++L K G+ +F RNVV
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275
Query: 64 SWTAIIAAFAQEWEVD 79
S+T +I + + +++
Sbjct: 276 SYTCLIDGYVETEQIE 291
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + GTQ ++ F + +V S L+ GKCG + F+++
Sbjct: 316 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTE 375
Query: 63 VSWTAIIAAFAQ 74
++W ++++ F Q
Sbjct: 376 IAWNSLVSVFGQ 387
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 49/72 (68%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ G+Q+ A+ +G + + V +SL++ GKCG+ D ++F +M VR+
Sbjct: 375 ISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDE 434
Query: 63 VSWTAIIAAFAQ 74
VSWTA+++A+AQ
Sbjct: 435 VSWTAMVSAYAQ 446
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG I G Q +R+ ++YVGS+LI KC +F++M +NVVS
Sbjct: 276 ACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 335
Query: 65 WTAIIAAFAQ 74
WTA++ + Q
Sbjct: 336 WTAMVVGYGQ 345
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++R G Q + V SGF +V+V ++L+ KC E +D ++F+++P RNV
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSW A+ + + Q +D C
Sbjct: 224 VSWNALFSCYVQ---IDFC 239
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q ++ GFV +++ G+SL++ KCG D + F ++ R +
Sbjct: 568 LNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 627
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 628 VSWSAMIGGLAQ 639
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q L+V+SGF +++YV +SLI GKC D ++FE+ + ++VS+T++I A+AQ
Sbjct: 481 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQ 538
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C +T+++R G Q +SG + + + LI+ KC K+ ++ ++
Sbjct: 63 LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDL 122
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I+ +AQ
Sbjct: 123 VSWSALISGYAQ 134
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ ++++V L+ KC D F +P +++++W AII+ ++Q
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437
Query: 75 EWEVDM 80
WE DM
Sbjct: 438 YWE-DM 442
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C R+ G ++ G+ + + ++L+ K G+ D +FEK+ ++
Sbjct: 265 VNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDI 324
Query: 63 VSWTAIIAA 71
VSW A+IA
Sbjct: 325 VSWNAVIAG 333
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + R G+ L +R GF +V +G+S + F GKC + K+F +MP RNVVSW
Sbjct: 117 CSNNAEFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSW 176
Query: 66 TAIIAAFAQEWEVD 79
TA+I A+ + E++
Sbjct: 177 TALIVAYVKSGELE 190
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ ++ G + + +GF NV V SSL+ GKCG + ++F++MP++N
Sbjct: 329 LTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNS 388
Query: 63 VSWTAIIAAFAQ 74
VSW+A++ + Q
Sbjct: 389 VSWSALLGGYCQ 400
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + C +R G +V V S+L+ KCG +F++MPVRN+++
Sbjct: 428 TCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLIT 487
Query: 65 WTAIIAAFAQ 74
W ++I FAQ
Sbjct: 488 WNSMIGGFAQ 497
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C G Q ++SG + +VG+SL++ K G + + K+F+ + V++
Sbjct: 125 LQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKD 184
Query: 62 VVSWTAIIAAFAQ 74
V+SWT++I+ + +
Sbjct: 185 VISWTSMISGYVR 197
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ G + + + GF +N + S+LI G+ D ++F+++ +
Sbjct: 227 IKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDA 286
Query: 63 VSWTAIIAAFAQ 74
+ WT+II+A +
Sbjct: 287 ICWTSIISALTR 298
>gi|222640155|gb|EEE68287.1| hypothetical protein OsJ_26530 [Oryza sativa Japonica Group]
Length = 483
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ L V+ G + V++GSSLI+ +C + Y +F+ MP +N
Sbjct: 78 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNT 137
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FA V+ C
Sbjct: 138 VSWTAMISGFALHNRVEPC 156
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF + V+V ++L+S KCG + +F + +++VSW A+I +Q
Sbjct: 191 GKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVSWNAMIFGCSQ 250
>gi|297608225|ref|NP_001061322.2| Os08g0238100 [Oryza sativa Japonica Group]
gi|255678268|dbj|BAF23236.2| Os08g0238100 [Oryza sativa Japonica Group]
Length = 647
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ L V+ G + V++GSSLI+ +C + Y +F+ MP +N
Sbjct: 265 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNT 324
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FA V+ C
Sbjct: 325 VSWTAMISGFALHNRVEPC 343
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF + V+V ++L+S KCG + +F + +++VSW A+I +Q
Sbjct: 378 GKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVSWNAMIFGCSQ 437
>gi|40253530|dbj|BAD05478.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 724
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ L V+ G + V++GSSLI+ +C + Y +F+ MP +N
Sbjct: 342 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNT 401
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FA V+ C
Sbjct: 402 VSWTAMISGFALHNRVEPC 420
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF + V+V ++L+S KCG + +F + +++VSW A+I +Q
Sbjct: 455 GKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVSWNAMIFGCSQ 514
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + IR G Q L V+ +V+VG+SL+ KCGE D K+F+ M RN
Sbjct: 291 LKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNT 350
Query: 63 VSWTAIIAAFAQE 75
V+WT+IIAA A+E
Sbjct: 351 VTWTSIIAAHARE 363
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CGS + G + +++ NVY+GS+L+ KCGE+ D + + +++P R+VVS
Sbjct: 394 ACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVS 453
Query: 65 WTAIIAA 71
WTA+I+
Sbjct: 454 WTAMISG 460
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ G +A ++ ++NV+VGS+LI KCG + +++F+ MP +N+
Sbjct: 493 LKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNL 552
Query: 63 VSWTAIIAAFAQ 74
VSW A+I +A+
Sbjct: 553 VSWKAMIMGYAR 564
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C G Q V+ G V N+ V SSL+ F +CGE + F+ M ++V+SW
Sbjct: 194 CSRRSEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISW 252
Query: 66 TAIIAAFAQE 75
TA+I+A +++
Sbjct: 253 TAVISACSRK 262
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+Y G++LIS C + G+ + K+F+ MP RN V+WTA+I +
Sbjct: 117 IYFGNNLISSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDGY 158
>gi|383167277|gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167278|gb|AFG66681.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167279|gb|AFG66682.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
gi|383167280|gb|AFG66683.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
Length = 150
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV CG+ N+ G + RSG+ ++VYVGS+L+ KCG D ++F+KMP R
Sbjct: 44 LPV--CGNLGNLEQGKEIHHEINRSGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMPRR 101
Query: 61 NVVSWTAIIAAFA 73
+V+SW ++I +A
Sbjct: 102 DVISWNSMIGGYA 114
>gi|297611639|ref|NP_001067683.2| Os11g0275400 [Oryza sativa Japonica Group]
gi|62701773|gb|AAX92846.1| expressed protein [Oryza sativa Japonica Group]
gi|62701774|gb|AAX92847.1| expressed protein [Oryza sativa Japonica Group]
gi|77549819|gb|ABA92616.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|77549820|gb|ABA92617.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584289|gb|EAZ25220.1| hypothetical protein OsJ_09020 [Oryza sativa Japonica Group]
gi|255679996|dbj|BAF28046.2| Os11g0275400 [Oryza sativa Japonica Group]
Length = 609
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ L V+ G + V++GSSLI+ +C + Y +F+ MP +N
Sbjct: 227 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNT 286
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FA V+ C
Sbjct: 287 VSWTAMISGFALHNRVEPC 305
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF + V+V ++L+S KCG + +F + +++VSW AII +Q
Sbjct: 340 GRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQFIFGCIACKDLVSWNAIIFGCSQ 399
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q C ++ + ++++GS+L++ +CGE D +F+ MP RN
Sbjct: 255 LKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNT 314
Query: 63 VSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 315 ITWTSMISGYAQ 326
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + + G Q C V+ G+ +NV V S++ F +CG+ +F+KM R+V
Sbjct: 155 LKSCGERCDAKLGQQVHCCIVKGGW-SNVIVDSAIAHFYAQCGDVASASAIFDKMAYRDV 213
Query: 63 VSWTAIIAAFAQE 75
+SWT +I A+ Q
Sbjct: 214 ISWTTMITAYVQH 226
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS ++ G + +++ N+ +GS+L+ F KCGE ++ E MP R+
Sbjct: 356 LSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDA 415
Query: 63 VSWTAIIAAF 72
+SWTA+I+ +
Sbjct: 416 ISWTALISGY 425
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + ++ +NV+VGSSLI +CG+ + +F+ MP N+
Sbjct: 457 LKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNL 516
Query: 63 VSWTAIIAAFAQ 74
V+W II FAQ
Sbjct: 517 VTWKVIITGFAQ 528
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ CG +R + +AVRS +V ++LIS + E D ++F++MP R+V
Sbjct: 57 LRDCGGADGVR---RVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSV 113
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ + +
Sbjct: 114 VSWTAMMNVYLK 125
>gi|357147690|ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Brachypodium distachyon]
Length = 859
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + + G+ C A++ G V NV G+SL+ KCGE + ++F ++P +++
Sbjct: 329 ISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIPEKDI 388
Query: 63 VSWTAIIAAFAQ 74
SW +++A +AQ
Sbjct: 389 FSWNSMVAGYAQ 400
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA---NVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+ +C ++ GT +A+R GF+ +V V +S++ KCGE +FEKM
Sbjct: 155 LQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGFARVVFEKMGR 214
Query: 60 RNVVSWTAIIAAFAQ--EWE 77
R++ +W ++I + +WE
Sbjct: 215 RDLGTWNSMIFGCCRSCKWE 234
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +I G Q CLA++ G + ++VGS+L KCG D K+FE+MP ++
Sbjct: 48 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 107
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I +++
Sbjct: 108 VSWTAMIDGYSK 119
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE-KMPVRNVV 63
+CG+ + + G V+ GF ++++VG++L K G+ +F RNVV
Sbjct: 151 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 210
Query: 64 SWTAIIAAFAQEWEVD 79
S+T +I + + +++
Sbjct: 211 SYTCLIDGYVETEQIE 226
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + GTQ ++ F + +V S L+ GKCG + F+++
Sbjct: 251 IKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE 310
Query: 63 VSWTAIIAAFAQ 74
++W ++++ F Q
Sbjct: 311 IAWNSLVSVFGQ 322
>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 876
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S R + G + C A++ G V NV G+SL+ KCGE I ++F+++P +++
Sbjct: 347 ISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEIPEKDI 406
Query: 63 VSWTAIIAAFAQ 74
SW +++A +AQ
Sbjct: 407 FSWNSMVAGYAQ 418
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA----NVYVGSSLISFCGKCGENIDVYKMFEKMP 58
+ +C T ++ GT LA+R GF+A +V VG+S+++ KCGE F+ M
Sbjct: 172 LQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGRARAAFDMMG 231
Query: 59 VRNVVSWTAII--AAFAQEWE 77
R++ +W ++I + EWE
Sbjct: 232 QRDLCTWNSMIFGCCRSNEWE 252
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q C ++ + ++++GS+L++ +CGE D +F+ MP RN
Sbjct: 288 LKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNT 347
Query: 63 VSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 348 ITWTSMISGYAQ 359
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + + G Q C V+ G+ +NV V S++ F +CG+ +F+KM R+V
Sbjct: 188 LKSCGERCDAKLGQQVHCCIVKGGW-SNVIVDSAIAHFYAQCGDVASASAIFDKMAYRDV 246
Query: 63 VSWTAIIAAFAQE 75
+SWT +I A+ Q
Sbjct: 247 ISWTTMITAYVQH 259
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS ++ G + +++ N+ +GS+L+ F KCGE ++ E MP R+
Sbjct: 389 LSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDA 448
Query: 63 VSWTAIIAAF 72
+SWTA+I+ +
Sbjct: 449 ISWTALISGY 458
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + ++ +NV+VGSSLI +CG+ + +F+ MP N+
Sbjct: 490 LKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNL 549
Query: 63 VSWTAIIAAFAQ 74
V+W II FAQ
Sbjct: 550 VTWKVIITGFAQ 561
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ CG +R + +AVRS +V ++LIS + E D ++F++MP R+V
Sbjct: 90 LRDCGGADGVR---RVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSV 146
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ + +
Sbjct: 147 VSWTAMMNVYLK 158
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + +++R G Q L RS +V++G++L+ KC +D ++F+ MP RNV
Sbjct: 158 LSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217
Query: 63 VSWTAIIAAFAQ 74
VSW ++I + Q
Sbjct: 218 VSWNSLITCYEQ 229
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +CG+ ++ G Q ++ GF ++V+VG+SL+ K G D K+FE+
Sbjct: 392 LNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 451
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I +AQ
Sbjct: 452 MAARDNVSWNAMIVGYAQ 469
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAV-RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C R G Q V R ++ + ++L+ KCG + +F+ MP R+
Sbjct: 259 MSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRS 318
Query: 62 VVSWTAIIAAFAQEWEVD 79
VVS T+I+A +A+ V+
Sbjct: 319 VVSETSILAGYAKSANVE 336
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCGS R +R G L++ GF N V ++L++ GKCG +D +FE+M +NV
Sbjct: 65 LNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNV 124
Query: 63 VSWTAIIAAFA 73
V+W A++ ++
Sbjct: 125 VTWNAMLGVYS 135
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S+ ++ G AV G ++V V ++L + KCG + ++F+ MP+R+
Sbjct: 571 LNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSA 630
Query: 63 VSWTAIIAAFAQEWE 77
VSW ++ A+AQ E
Sbjct: 631 VSWNGMLQAYAQHGE 645
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G + + F +++VG++LI+ +C D ++F +M N+++
Sbjct: 270 ACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLIT 329
Query: 65 WTAIIAAFA 73
W+AII AFA
Sbjct: 330 WSAIITAFA 338
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+V+V ++L++ KCG D K+F+ MP R+V +W ++I+A++
Sbjct: 194 DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYS 237
>gi|218190567|gb|EEC72994.1| hypothetical protein OsI_06907 [Oryza sativa Indica Group]
Length = 711
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ L V+ G + V++GSSLI+ +C + Y +F+ MP +N
Sbjct: 20 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNT 79
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FA V+ C
Sbjct: 80 VSWTAMISGFALHNRVEPC 98
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ L V+ G + V++GSSLI+ +C + Y +F+ MP +N
Sbjct: 329 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNT 388
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FA V+ C
Sbjct: 389 VSWTAMISGFALHNRVEPC 407
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF + V+V ++L+S KCG + +F + +++VSW A+I +Q
Sbjct: 442 GKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVSWNAMIFGCSQ 501
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF + V+V ++L+S KCG + +F + +++VSW AII +Q
Sbjct: 133 GRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIACKDLVSWNAIIFGCSQ 192
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q L V+ +V+VG+SL+ KCGE D K+F+ M RN
Sbjct: 291 LKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNT 350
Query: 63 VSWTAIIAAFAQE 75
V+WT+IIAA A+E
Sbjct: 351 VTWTSIIAAHARE 363
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS + G + +++ NVY+GS+L+ KCGE+ D + + +++P R+V
Sbjct: 392 LRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDV 451
Query: 63 VSWTAIIA 70
VSWTA+I+
Sbjct: 452 VSWTAMIS 459
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ G +A ++ ++NV+VGS+LI KCG + +++F+ MP +N+
Sbjct: 493 LKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNL 552
Query: 63 VSWTAIIAAFAQ 74
VSW A+I +A+
Sbjct: 553 VSWKAMIMGYAR 564
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C G Q V+ G V N+ V SSL+ F +CGE + F+ M ++V+SW
Sbjct: 194 CSRRAEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISW 252
Query: 66 TAIIAA 71
TA+I+A
Sbjct: 253 TAVISA 258
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+Y G++LIS C + G+ + K+F+ MP +N V+WTA+I + +
Sbjct: 117 IYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLK 160
>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G Q LA++ G +++ V SSLI F KCG DV +FE MP+R+V
Sbjct: 305 LTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDV 364
Query: 63 VSWTAIIAAFAQ 74
++WT +I ++ +
Sbjct: 365 ITWTGMITSYME 376
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 49/82 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G+Q + V+ G ++ V++ ++L+ KCG V ++FE+MP R++
Sbjct: 203 LTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDI 262
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
SW +I++ +E++ D + +
Sbjct: 263 TSWNTVISSLVKEFKYDEAFDY 284
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CGS G Q C A++SG + VG++ +S KC D ++F M ++++VSW
Sbjct: 544 CGSIGFHEMGKQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSW 603
Query: 66 TAIIAAFAQEWEVD 79
++A W+ D
Sbjct: 604 NGLVAGHVLHWQGD 617
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ-EWE 77
++++G++LIS K G D K+F + NVVS+TA+I+ F++ +WE
Sbjct: 129 DIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWE 177
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN- 61
+T+CG ++ + Q Q ++ G ++N + ++L+ +CG D K+F + + N
Sbjct: 437 ITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLEND 496
Query: 62 -VVSWTAIIAAFAQEWEVD 79
T++I +A+ +++
Sbjct: 497 YTAMLTSMICGYARNGKLN 515
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T R G A R G ++YVG+SLI GKCGE D K+F+ M RNV
Sbjct: 135 IKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNV 194
Query: 63 VSWTAIIAAF 72
VSWTA++ +
Sbjct: 195 VSWTAMLVGY 204
>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G Q LA++ G +++ V SSLI F KCG DV +FE MP+R+V
Sbjct: 305 LTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDV 364
Query: 63 VSWTAIIAAFAQ 74
++WT +I ++ +
Sbjct: 365 ITWTGMITSYME 376
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 49/82 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G+Q + V+ G ++ V++ ++L+ KCG V ++FE+MP R++
Sbjct: 203 LTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDI 262
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
SW +I++ +E++ D + +
Sbjct: 263 TSWNTVISSLVKEFKYDEAFDY 284
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CGS G Q C A++SG + VG++ +S KC D ++F M ++++VSW
Sbjct: 544 CGSIGFHEMGMQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSW 603
Query: 66 TAIIAAFAQEWEVD 79
++A W+ D
Sbjct: 604 NGLVAGHVLHWQGD 617
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ-EWE 77
++++G++LIS K G D K+F + NVVS+TA+I+ F++ +WE
Sbjct: 129 DIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWE 177
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN- 61
+T+CG ++ + Q Q ++ G ++N + ++L+ +CG D K+F + + N
Sbjct: 437 ITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLEND 496
Query: 62 -VVSWTAIIAAFAQEWEVD 79
T++I +A+ +++
Sbjct: 497 YTAMLTSMICGYARNGKLN 515
>gi|414868050|tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q V+ + +++VGS+L++ +CGE D +F+KMP RN
Sbjct: 48 LKACAEEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNT 107
Query: 63 VSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 108 ITWTSMISGYAQ 119
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS ++I G + +++ N+ +GS+L+ F + GE+ ++ E MP R+
Sbjct: 149 LSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDA 208
Query: 63 VSWTAIIAAF 72
V+WTA+I+ +
Sbjct: 209 VAWTAMISGY 218
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + + ++ +NV+VG SLI +CG+ + ++F+ MP N+
Sbjct: 250 LKACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNL 309
Query: 63 VSWTAIIAAFAQ--EWEVDMCYTFIV 86
V+W +I F Q E + Y F++
Sbjct: 310 VTWKVMITGFTQNGRSEEALKYMFLM 335
>gi|218185575|gb|EEC68002.1| hypothetical protein OsI_35789 [Oryza sativa Indica Group]
Length = 295
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ L V+ G + V++GSSLI+ +C + Y +F+ MP +N
Sbjct: 23 MSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNT 82
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FA V+ C
Sbjct: 83 VSWTAMISGFALHNRVEPC 101
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF + V+V ++L+S KCG + +F + +++VSW AII +Q
Sbjct: 136 GRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQFIFGCIACKDLVSWNAIIFGCSQ 195
>gi|194707160|gb|ACF87664.1| unknown [Zea mays]
gi|413920054|gb|AFW59986.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 553
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 51/79 (64%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + + G Q+ V+ G+V+++ G+SLISF +C + +++F+ M ++
Sbjct: 158 LSYCAAEKIVTAGVQFHAQLVKVGYVSSISTGNSLISFYSRCSQLEIAHRVFQNMTAKST 217
Query: 63 VSWTAIIAAFAQEWEVDMC 81
V+WTA+I+ +AQ+ +V+ C
Sbjct: 218 VTWTALISGYAQDNQVEPC 236
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L +R GF + V+V ++LIS KCG + +FE + +++VSW ++I ++Q
Sbjct: 271 GKSVQALQMRMGFDSYVHVSNALISMYAKCGSIGEARAVFESIRCKDLVSWNSLIFGYSQ 330
Query: 75 EWEVDMC 81
+ C
Sbjct: 331 HGLAEHC 337
>gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1218
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C S + + G + LAV+ GFV +V VG+SLI KCG+ + +K+F+ MP ++V
Sbjct: 352 VSACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLIDMYSKCGKLENAWKVFDMMPEKDV 411
Query: 63 VSWTAIIAAFAQ 74
+W ++I + Q
Sbjct: 412 YTWNSMIGGYCQ 423
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG++R+I+ G LA++ G +V +S+++ KCG+ K FE M
Sbjct: 181 LQACGNSRDIKSGEMVHSLAIKCGVDGYPFVNNSILAVYAKCGKLSLASKCFEMMDKSET 240
Query: 63 VSWTAIIAAFAQEWEVD 79
+W A+I+ + Q +++
Sbjct: 241 AAWNALISGYCQHGQIE 257
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
N ++ + L+S KCG D K+F +M +N+ +W+A+I AF++E
Sbjct: 107 NPFLETKLVSMYAKCGSLSDARKLFGEMREKNLYTWSAMIGAFSRE 152
>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Brachypodium distachyon]
Length = 682
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ST+ + G Q A++ NVYVGS+L+ GKC D + FE +P +NVVSW
Sbjct: 219 CASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSW 278
Query: 66 TAIIAAFAQ 74
TA++ A+ Q
Sbjct: 279 TAVMTAYTQ 287
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G A+++G + V ++L++ K G D +++F MP R+V
Sbjct: 317 LNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDV 376
Query: 63 VSWTAIIAAFAQ 74
VSW ++I +A
Sbjct: 377 VSWNSVIIGYAH 388
>gi|226503379|ref|NP_001142111.1| uncharacterized protein LOC100274275 [Zea mays]
gi|195615590|gb|ACG29625.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 553
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 51/79 (64%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + + G Q+ V+ G+V+++ G+SLISF +C + +++F+ M ++
Sbjct: 158 LSYCAAEKIVTAGVQFHAQLVKVGYVSSISTGNSLISFYSRCSQLEIAHRVFQNMTAKST 217
Query: 63 VSWTAIIAAFAQEWEVDMC 81
V+WTA+I+ +AQ+ +V+ C
Sbjct: 218 VTWTALISGYAQDNQVEPC 236
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L +R GF + V+V ++LIS KCG + +FE + +++VSW+++I ++Q
Sbjct: 271 GKSVQALQMRMGFDSYVHVSNALISMYAKCGSIGEARAVFESIRCKDLVSWSSLIFGYSQ 330
Query: 75 EWEVDMC 81
+ C
Sbjct: 331 HGLAEHC 337
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SC +R G + C V+ GF ++V+V SSL++ + GE + + +F +M VRN+
Sbjct: 135 VRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNI 194
Query: 63 VSWTAIIAAFAQ 74
VSWTA+IA + Q
Sbjct: 195 VSWTAVIAGYVQ 206
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G ++ G +V + ++LI+ GKCG +F+ M V+N+VS
Sbjct: 238 ACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVS 297
Query: 65 WTAIIAAFAQ 74
W A+IAA+ Q
Sbjct: 298 WNAMIAAYEQ 307
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPV 59
V++C + G Q+ CL ++SG +V VG SL+ KC G D K+F++MPV
Sbjct: 152 VSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPV 211
Query: 60 RNVVSWTAIIAAFAQEWEVD 79
NV+SWTAII + Q D
Sbjct: 212 HNVMSWTAIITGYVQSGGCD 231
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ S I G Q ++SGF +N+++ ++LIS +CG +++F +M NV
Sbjct: 358 LSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNV 417
Query: 63 VSWTAIIAAFAQ 74
+SWT++I FA+
Sbjct: 418 ISWTSMITGFAK 429
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRNV 62
+C + NI G +++G F ++V VG +LI F G+ YK+F++MP RNV
Sbjct: 51 ACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNV 110
Query: 63 VSWTAIIAAFAQ 74
V+WT +I F Q
Sbjct: 111 VTWTLMITRFQQ 122
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +I G Q L V+ + VG+SLIS +CG + K F+ + +N+
Sbjct: 257 LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNL 316
Query: 63 VSWTAIIAAFAQ 74
VS+ I+ A+A+
Sbjct: 317 VSYNTIVNAYAK 328
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + R G Q L +S ++VY+G++L+ KC + K+F+ MP RN+
Sbjct: 154 LSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNI 213
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSW ++I + Q VD V
Sbjct: 214 VSWNSLITCYEQNGPVDEALALFV 237
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +C + N++ G Q ++ GF ++V+VG+SL+ K G D K+FE+
Sbjct: 388 LNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFER 447
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I +AQ
Sbjct: 448 MAARDNVSWNAMIVGYAQ 465
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C R G Q V+S F ++ + ++L+ KCG + +F++M +R+
Sbjct: 255 MSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRS 314
Query: 62 VVSWTAIIAAFAQEWEV 78
VVS T++I +A+ V
Sbjct: 315 VVSETSMITGYAKSANV 331
>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Cucumis sativus]
Length = 697
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S ++I G Q ++S +VY+GSS+I GKCG + F+++ RNVVSW
Sbjct: 234 CASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSW 293
Query: 66 TAIIAAFAQ 74
T+IIAA+ Q
Sbjct: 294 TSIIAAYFQ 302
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+SLI+ KC E K+F+ MP RNVVSW+A++A + Q
Sbjct: 61 NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQ 100
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q A +SG NV VG++LI K G+ + +F M N+++W AII +
Sbjct: 344 GDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSH 403
>gi|298205132|emb|CBI40653.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG ++R G + C + +GF +NV+ + +++ KC + YKMF++MP R++V W
Sbjct: 191 CGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCW 250
Query: 66 TAIIAAFAQ 74
II+ +AQ
Sbjct: 251 NTIISGYAQ 259
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG ++R G + C + +GF +NV+ + +++ KC + YKMF++MP R++V W
Sbjct: 185 CGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCW 244
Query: 66 TAIIAAFAQ 74
II+ +AQ
Sbjct: 245 NTIISGYAQ 253
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G ++R+GF + V V ++L+ KCG +F++M + VVSW ++I
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350
Query: 71 AFAQ 74
+ Q
Sbjct: 351 GYVQ 354
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
L +R+ NV+V ++L+ KCG K+F+ M R+V +W A+I +
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYG 555
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 29 ANVYVGSSLISFCGKCGENIDVY-KMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
++V V +SLIS KC + +D+ ++FE + + +VSW A+I +AQ ++
Sbjct: 410 SDVSVMNSLISMYSKC-KRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRIN 460
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SC +R G + C V+ GF ++V+V SSL++ + GE + + +F +M VRN+
Sbjct: 135 VRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNI 194
Query: 63 VSWTAIIAAFAQ 74
VSWTA+IA + Q
Sbjct: 195 VSWTAVIAGYVQ 206
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+++C S + G L R G NV + ++LI KCG NID+ + +FE++P R+
Sbjct: 337 ISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCG-NIDLAREVFERLPCRS 395
Query: 62 VVSWTAIIAAFA 73
VVSWT++I A A
Sbjct: 396 VVSWTSMIGACA 407
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G ++ G +V + ++LI+ GKCG +F+ M V+N+VS
Sbjct: 238 ACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVS 297
Query: 65 WTAIIAAFAQ 74
W A+IAA+ Q
Sbjct: 298 WNAMIAAYEQ 307
>gi|242077973|ref|XP_002443755.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
gi|241940105|gb|EES13250.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
Length = 871
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S R + G + C A++ G V NV G+SL+ KCGE + ++F ++P +++
Sbjct: 344 ISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAKRIFNEIPEKDI 403
Query: 63 VSWTAIIAAFAQ 74
SW +++A +AQ
Sbjct: 404 FSWNSMVAGYAQ 415
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA----NVYVGSSLISFCGKCGENIDVYKMFEKMP 58
+ +C T ++ G LA+RSGF+A +V VG+S+++ KC E +FEKM
Sbjct: 169 LQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMYVKCRELGRARVVFEKMG 228
Query: 59 VRNVVSWTAIIAAFAQ--EWE 77
R++ +W ++I Q EWE
Sbjct: 229 QRDLGTWNSMIFGCCQSNEWE 249
>gi|2832657|emb|CAA16732.1| putative protein [Arabidopsis thaliana]
gi|7268645|emb|CAB78854.1| putative protein [Arabidopsis thaliana]
Length = 565
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q L V+ +V+VG+SL+ KCGE D K+F+ M RN
Sbjct: 272 LKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNT 331
Query: 63 VSWTAIIAAFAQE 75
V+WT+IIAA A+E
Sbjct: 332 VTWTSIIAAHARE 344
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+++ NVY+GS+L+ KCGE+ D + + +++P R+VVSWTA+I+
Sbjct: 376 IKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISG 424
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C G Q V+ G V N+ V SSL+ F +CGE + F+ M ++V+SW
Sbjct: 175 CSRRAEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISW 233
Query: 66 TAIIAAFAQE 75
TA+I+A +++
Sbjct: 234 TAVISACSRK 243
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ G +A ++ ++NV+VGS+LI MP +N+
Sbjct: 457 LKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHI----------------MPEKNL 500
Query: 63 VSWTAIIAAFAQ 74
VSW A+I +A+
Sbjct: 501 VSWKAMIMGYAR 512
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +++ G + + + F ANV+ + +++ KC + D YKMF++MP R++VSW
Sbjct: 157 CGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSW 216
Query: 66 TAIIAAFAQ 74
IIA F+Q
Sbjct: 217 NTIIAGFSQ 225
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
L +RS N++V ++L+ KCG K+F+ + R+V++W A+I +
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G A+R+GF V + ++L KCG +F+ M + VVSW +++ + Q
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326
Query: 75 EWE 77
E
Sbjct: 327 NGE 329
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +++ G + + + F ANV+ + +++ KC + D YKMF++MP R++VSW
Sbjct: 157 CGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSW 216
Query: 66 TAIIAAFAQ 74
IIA F+Q
Sbjct: 217 NTIIAGFSQ 225
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
L +RS N++V ++L+ KCG K+F+ + R+V++W A+I +
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G A+R+GF V + ++L KCG +F+ M + VVSW +++ + Q
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326
Query: 75 EWE 77
E
Sbjct: 327 NGE 329
>gi|225460139|ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Vitis vinifera]
Length = 725
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPV 59
+PV C R +R G + AV++GF+ NV + +SL+ KCG N+D +K+F+ M
Sbjct: 464 LPV--CAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKCG-NLDYSFKLFDGMDA 520
Query: 60 RNVVSWTAIIAAFAQ 74
RNV+SWTA+I ++ +
Sbjct: 521 RNVISWTAMIDSYVE 535
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S R G + L +++G V + + +SLI KCG+ MFE++ R+V
Sbjct: 261 IKSFAGATAFRQGLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDV 320
Query: 63 VSWTAIIAAFAQ 74
V W A+IA F
Sbjct: 321 VVWGAMIAGFGH 332
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG R ++ G + ++ F + +V + +I GK G F+ +P + ++W
Sbjct: 568 CGELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAW 627
Query: 66 TAIIAAFA 73
TAII A+
Sbjct: 628 TAIIEAYG 635
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+ V++ S+LI KCG+ ++F RN VSWTA+++ + +D
Sbjct: 387 YSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLD 439
>gi|147774530|emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera]
Length = 664
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPV 59
+PV C R +R G + AV++GF+ NV + +SL+ KCG N+D +K+F+ M
Sbjct: 403 LPV--CAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKCG-NLDYSFKLFDGMDA 459
Query: 60 RNVVSWTAIIAAFAQ 74
RNV+SWTA+I ++ +
Sbjct: 460 RNVISWTAMIDSYVE 474
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S R G + L +++G V + + +SLI KCG+ MFE++ R+V
Sbjct: 200 IKSFAGATAFRQGLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDV 259
Query: 63 VSWTAIIAAFAQ 74
V W A+IA F
Sbjct: 260 VVWGAMIAGFGH 271
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG R ++ G + ++ F + +V + +I GK G F+ +P + ++W
Sbjct: 507 CGELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAW 566
Query: 66 TAIIAAFA 73
TAII A+
Sbjct: 567 TAIIEAYG 574
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+ V++ S+LI KCG+ ++F RN VSWTA+++ + +D
Sbjct: 326 YSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLD 378
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G Q L +S F+++VY+GS+L+ KCG D ++F++M RNV
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218
Query: 63 VSWTAIIAAFAQ 74
VSW ++I F Q
Sbjct: 219 VSWNSLITCFEQ 230
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV------ANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +C + G Q ++ GF +++VG+SLI KCG + Y +F K
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I FAQ
Sbjct: 453 MMERDCVSWNAMIIGFAQ 470
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SGF +++ + LI KCG D ++F+KMP RN+ +W +++ +
Sbjct: 47 IKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTK 98
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
+ NV +S+IS MF KM RNVVSW A+IA + Q E
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGE 366
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C S I+ G + V++ + N + + ++ + KC + +F+ MP+RN
Sbjct: 260 ISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319
Query: 62 VVSWTAIIAAFA 73
V++ T++I+ +A
Sbjct: 320 VIAETSMISGYA 331
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R+++ G Q +++G V +V+V S+LI GKCGE ++ K F+ + RNVV+W
Sbjct: 239 CAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAW 298
Query: 66 TAIIAAFAQ 74
TA++ A+ Q
Sbjct: 299 TAVLTAYLQ 307
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
+SLI+ KCG++ K+F++M RNVVSW+A++ + + EV
Sbjct: 65 NSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEV 108
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRN 61
+ +C S + G V SGF ++ VG++LI+ K G NID Y +F M R+
Sbjct: 337 LNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSG-NIDSSYNVFSNMMNRD 395
Query: 62 VVSWTAIIAAFAQ 74
V++W A+I ++
Sbjct: 396 VITWNAMICGYSH 408
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G C ++R GF+ +VYVGS+L+ KCG+ +F+ MP RNVVSW A+I +A
Sbjct: 308 GRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYA 366
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81
AV SG + +V SSL+ + G +F++MP +NVV W+A+IA ++ + +
Sbjct: 43 AVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAA 102
Query: 82 YTFI 85
+ +
Sbjct: 103 WGLL 106
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q V+ + +++VGS+L++ +CGE D +F+KMP RN
Sbjct: 297 LKACAEEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNT 356
Query: 63 VSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 357 ITWTSMISGYAQ 368
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + R G Q C V+ G+ +NV V S++ F +CG+ +F++M R+V
Sbjct: 197 LKSCGERCDARLGQQVHCCVVKGGW-SNVIVDSAITHFYAQCGDVAAASTVFDRMASRDV 255
Query: 63 VSWTAIIAAFAQEWEVD 79
+SWT +I A+ Q D
Sbjct: 256 ISWTTMITAYVQHGHSD 272
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS ++I G + +++ N+ +GS+L+ F + GE+ ++ E MP R+
Sbjct: 398 LSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDA 457
Query: 63 VSWTAIIAAF 72
V+WTA+I+ +
Sbjct: 458 VAWTAMISGY 467
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + + ++ +NV+VG SLI +CG+ + ++F+ MP N+
Sbjct: 499 LKACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNL 558
Query: 63 VSWTAIIAAFAQ--EWEVDMCYTFIV 86
V+W +I F Q E + Y F++
Sbjct: 559 VTWKVMITGFTQNGRSEEALKYMFLM 584
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+A+RS V+V ++LIS + E + K+F++MP R++VSWTA++ + +
Sbjct: 112 HAVALRSLGSLGVFVSNNLISAYVRFDEVANARKVFDEMPERSIVSWTAMMNGYQK 167
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 44/68 (64%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G ++R G + + + +GF +N++ +++++ KC + D YKMFE+MP R++VSW
Sbjct: 153 GENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWN 212
Query: 67 AIIAAFAQ 74
++A +AQ
Sbjct: 213 TVVAGYAQ 220
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+ +R G A R+GF V V ++++ KCG +F+ M RNVVSW +I
Sbjct: 257 KALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMI 316
Query: 70 AAFAQEWEVDMCY-TFI 85
+AQ E + + TF+
Sbjct: 317 DGYAQNGESEEAFATFL 333
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
LA+R+ NV+V ++LI KCG K+F+ M R+V++W A+I +
Sbjct: 470 LAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYG 522
>gi|326499065|dbj|BAK06023.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 572
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++IRGG Q L V+ G+ +V G+SLI +CG+ + ++F+ MP++N VSW
Sbjct: 187 CAVKQSIRGGAQL--LMVKIGYELSVLSGTSLIILYARCGQLGNACRVFQDMPIKNTVSW 244
Query: 66 TAIIAAFAQEWEVDMC 81
T +I+ +A++ +V+ C
Sbjct: 245 TTLISGYARDNQVEPC 260
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L +R GF V+V ++LIS KCG I+ +FE + +++VSW ++I ++Q
Sbjct: 295 GKSIHGLELRMGFDLCVHVSNALISMYVKCGNIIEAQSIFESIVCKDLVSWNSMIFGYSQ 354
Query: 75 EWEVDMCYTFI 85
V+ C + +
Sbjct: 355 HGLVECCLSLL 365
>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 694
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G Q Q +VR G NV+ S+L+ KCG D ++F+ MPVRN+VSW AIIA +
Sbjct: 110 GAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGY 167
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC +R G Q L V+SGF +N +V SSLI KCG D K FE+ + V
Sbjct: 408 SCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVP 467
Query: 65 WTAIIAAFAQ 74
W +++ +AQ
Sbjct: 468 WNSMMFGYAQ 477
>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 944
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q +RSG + NV+ GS L+ KCG D ++FE+MP RN VSW A+I+A+A
Sbjct: 465 GKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYA 523
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C A+ + + ++VG+SL+ KC + +F+ + R+ VSWTA+I+ + Q
Sbjct: 364 GRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQ 423
Query: 75 E 75
+
Sbjct: 424 K 424
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L+V +GF + VG+ ++ F K ++ +F +MP + VS+ +I++++Q
Sbjct: 263 GQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQ 322
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q CLA++ GF +V GS+L+ KC + D +++F +MP RN+
Sbjct: 145 LKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNL 204
Query: 63 VSWTAIIAAFAQ 74
V W+A+IA + Q
Sbjct: 205 VCWSAVIAGYVQ 216
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G Q LAV+ G N+ V ++++ GKCG ++ +FE+M R+
Sbjct: 347 LTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDA 406
Query: 63 VSWTAIIAAFAQEWEV 78
VSW AIIAA Q E+
Sbjct: 407 VSWNAIIAAHEQNEEI 422
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + I G Q ++ ++VY+ S+L+ KCG D MFEK P R+ V+W
Sbjct: 552 CANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTW 611
Query: 66 TAIIAAFA 73
+A+I A+A
Sbjct: 612 SAMICAYA 619
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + + G Q + +GFV +YV + L+ F K + +K+F++MP R+V+SW
Sbjct: 16 CSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISW 75
Query: 66 TAIIAAFA 73
+I +A
Sbjct: 76 NTLIFGYA 83
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + + GT+ ++SG + +VGS+L+ GKCG ++ K+ ++ +
Sbjct: 448 VKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTT 507
Query: 63 VSWTAIIAAFAQE 75
VSW +II+ F+ +
Sbjct: 508 VSWNSIISGFSSQ 520
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + GTQ A++S F + +G++ + KC D +K+F +P S
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQS 307
Query: 65 WTAIIAAFAQE 75
+ AII +A++
Sbjct: 308 YNAIIVGYARQ 318
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++R G Q + V SGF +V+V ++L+ KC E +D ++F+++P RNV
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSW A+ + + Q D C
Sbjct: 224 VSWNALFSCYVQX---DFC 239
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q ++ GFV +++ G+SL++ KCG D + F ++ R +
Sbjct: 541 LNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 600
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 601 VSWSAMIGGLAQ 612
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q L+V+SGF +++YV +SLI GKC D ++FE+ + ++VS+T++I A+AQ
Sbjct: 454 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQ 511
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C +T+++R G Q +SG + + + LI+ KC K+ ++ ++
Sbjct: 63 LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDL 122
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I+ +AQ
Sbjct: 123 VSWSALISGYAQ 134
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
++++V L+ KC D F +P +++++W AII+ ++Q WE DM
Sbjct: 365 SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE-DM 415
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C R+ G ++ G+ + + ++L+ K G+ D +FEK+ ++
Sbjct: 265 VNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDI 324
Query: 63 VSWTAIIAA 71
VSW A+IA
Sbjct: 325 VSWNAVIAG 333
>gi|125553402|gb|EAY99111.1| hypothetical protein OsI_21070 [Oryza sativa Indica Group]
Length = 419
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ST+ + G+Q A++ NVYVGS+L+ GKC + ++FE +P +N+VSW
Sbjct: 224 CASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSW 283
Query: 66 TAIIAAFAQ 74
TAI+ A+ Q
Sbjct: 284 TAIMTAYTQ 292
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T ++ G+ L V +GF N Y+GSSL+S KCG + ++F +MP RNV
Sbjct: 203 LVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNV 262
Query: 63 VSWTAIIAAFAQ 74
V WT++IA Q
Sbjct: 263 VCWTSMIAGCTQ 274
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SCG + G G + V +SLI KCG+ Y++F + R+V
Sbjct: 304 VSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDV 363
Query: 63 VSWTAIIAAFA 73
+WT +I FA
Sbjct: 364 FTWTVMIMGFA 374
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C N+R G Q V+ G N+++G++L++ GKCG + K+ ++MP R+V
Sbjct: 144 LKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDV 203
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +++A +AQ + D
Sbjct: 204 VSWNSMVAGYAQSGQFD 220
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G + + N+ + ++L+ KCG + +F+KM +R+VVS
Sbjct: 315 ACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVS 374
Query: 65 WTAIIAAFAQ 74
WT++++A+ +
Sbjct: 375 WTSMMSAYGR 384
>gi|357153150|ref|XP_003576355.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Brachypodium distachyon]
Length = 617
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC ++ GG Q L ++ G + V SSL+ KC E D +MF+ MP R++
Sbjct: 338 VSSCACVNDLGGGRQCHALVIKHGLESIPTVASSLLDMYSKCAEMDDATRMFDAMPRRDI 397
Query: 63 VSWTAIIAAFAQ 74
VSW A+I AQ
Sbjct: 398 VSWNAMICGLAQ 409
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF-AQE 75
Q + ++SG + ++++ +SL++ G+CG K+FE MP ++VVSWTA+I+ A
Sbjct: 251 QVHSVILKSGHLKDLFLCNSLLNVYGRCGYVDLAKKLFEAMPEKDVVSWTALISGLVASG 310
Query: 76 WEVDMCYTF 84
+ D TF
Sbjct: 311 HQADAFKTF 319
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q A+++G A+ VG+ + G D K+FE MP R++V+W ++ +
Sbjct: 150 QVHARALKAGAFADACVGTGFVRLYSGLGLIGDARKVFEGMPERDLVAWNVLLDCGMRSG 209
Query: 77 EVDMCYTFIV 86
E C +V
Sbjct: 210 EAGSCLQDLV 219
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S R + G Q A SGF+ + V SSL KC +D K+F++MP R+V
Sbjct: 111 IKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDV 170
Query: 63 VSWTAIIAAFAQ 74
V W+A+IA +++
Sbjct: 171 VVWSAMIAGYSR 182
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G + C ++R G +VYVGS+LI KCG + F+KM N+
Sbjct: 383 IPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNL 442
Query: 63 VSWTAIIAAFA 73
VSW A++ +A
Sbjct: 443 VSWNAVMKGYA 453
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C N+R G Q V+ G N+++G++L++ GKCG + K+ ++MP R+V
Sbjct: 144 LKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDV 203
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +++A +AQ + D
Sbjct: 204 VSWNSMVAGYAQSGQFD 220
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G + + N+ + ++L+ KCG + +F+KM +R+VVS
Sbjct: 315 ACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVS 374
Query: 65 WTAIIAAFAQ 74
WT++++A+ +
Sbjct: 375 WTSMMSAYGR 384
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T ++ G L V +GF N Y+GSSLIS KCG+ D ++F+ MP RN
Sbjct: 203 LVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNA 262
Query: 63 VSWTAIIAAFAQ 74
V WT++I+ + Q
Sbjct: 263 VCWTSMISGYTQ 274
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SCG + G G ++ V +SLI KCG+ Y +F M R+
Sbjct: 304 VSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDN 363
Query: 63 VSWTAIIAAFA 73
SWT II FA
Sbjct: 364 FSWTVIIMGFA 374
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C + +R G Q V+ + +++VGS+L++ +CGE D +F+KMP RN
Sbjct: 118 ALKACAEEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRN 177
Query: 62 VVSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 178 TITWTSMISGYAQ 190
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS ++I G + +++ N+ +GS+L+ F +CGE+ ++ E MP R+
Sbjct: 220 LSACGSMQSIYLGKELHAQIIKNCMEQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDA 279
Query: 63 VSWTAIIAAF 72
V+WTA+I+ +
Sbjct: 280 VAWTAMISGY 289
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + + G Q C V+ G+ +NV V S++ F +CG+ +F++M R+V
Sbjct: 19 LKSCGERCDAKLGQQVHCCVVKGGW-SNVIVDSAVAHFYAQCGDVAAASTVFDRMASRDV 77
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT +I A+ Q D
Sbjct: 78 VSWTTMITAYVQHGHGD 94
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C +R G + + ++ +NV+VG SLI +CG+ + ++F+ MP N
Sbjct: 320 ALKACARLEALRDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHN 379
Query: 62 VVSWTAIIAAFAQ 74
+V+W +I F Q
Sbjct: 380 LVTWKVMITGFTQ 392
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T ++ G L V +GF N Y+GSSLIS KCG+ D ++F+ MP RN
Sbjct: 203 LVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNA 262
Query: 63 VSWTAIIAAFAQ 74
V WT++I+ + Q
Sbjct: 263 VCWTSMISGYTQ 274
Score = 34.7 bits (78), Expect = 8.4, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SCG + G G ++ V +SLI KCG+ Y +F M R+
Sbjct: 304 VSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDN 363
Query: 63 VSWTAIIA 70
SWT I+
Sbjct: 364 FSWTVIMG 371
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + SC +++++ G Q + NVYV S IS +CG D Y++F+ MP R
Sbjct: 128 LALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHR 187
Query: 61 NVVSWTAIIAAFAQ 74
+VVSW A+IA FA+
Sbjct: 188 DVVSWNAMIAGFAR 201
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG G + + R N+ + ++L+ CG D ++F+ M R+V+SW
Sbjct: 303 CGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISW 362
Query: 66 TAIIAAFAQ 74
T+II+A+ +
Sbjct: 363 TSIISAYGK 371
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ C A+ SG ++ + V ++L++ GKCG D +++F +M +
Sbjct: 382 ISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDE 441
Query: 63 VSWTAIIAAFAQ 74
VSWTA+++ +AQ
Sbjct: 442 VSWTALVSGYAQ 453
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG ++ G Q +R+ + N++VGS+L+ KC +F KM +NV
Sbjct: 281 LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNV 340
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ + Q
Sbjct: 341 VSWTAMLVGYGQ 352
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q V+ GF + V+VGS L+ K G + F++MP +NVV + +IA +
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMR 220
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
N+Y ++L+S K ++ ++F MP R++VSW ++I+A+A
Sbjct: 74 NLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYA 117
>gi|255571546|ref|XP_002526719.1| DNA-damage-inducible protein f, putative [Ricinus communis]
gi|223533908|gb|EEF35633.1| DNA-damage-inducible protein f, putative [Ricinus communis]
Length = 906
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G +++G+ NV+VGSS + KCGE D K+F++MP RNVVSW+ +I +AQ
Sbjct: 29 GKSVHGFVIKTGYNFNVFVGSSTVDMYAKCGELSDARKVFDEMPERNVVSWSGMIYGYAQ 88
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG + + G Q Q L +++ + ++ +VGSSLISF +CG +K+F+++ ++N+ W
Sbjct: 121 CGDSTLLELGRQIQGLCLKTSYDSSSFVGSSLISFYSRCGVVEAAFKVFDEVSIKNLGMW 180
Query: 66 TAIIAAFAQ 74
A++ A AQ
Sbjct: 181 NAMLIACAQ 189
>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 687
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ST+ + G+Q A++ NVYVGS+L+ GKC + ++FE +P +N+VSW
Sbjct: 224 CASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSW 283
Query: 66 TAIIAAFAQ 74
TAI+ A+ Q
Sbjct: 284 TAIMTAYTQ 292
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G +++G + V ++L++ K G D ++F MP R+V
Sbjct: 322 LNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDV 381
Query: 63 VSWTAIIAAFAQ 74
VSW +II +A
Sbjct: 382 VSWNSIIIGYAH 393
>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
Length = 656
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ST+ + G+Q A++ NVYVGS+L+ GKC + ++FE +P +N+VSW
Sbjct: 193 CASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSW 252
Query: 66 TAIIAAFAQ 74
TAI+ A+ Q
Sbjct: 253 TAIMTAYTQ 261
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G +++G + V ++L++ K G D ++F MP R+V
Sbjct: 291 LNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDV 350
Query: 63 VSWTAIIAAFAQ 74
VSW +II +A
Sbjct: 351 VSWNSIIIGYAH 362
>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 698
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GTQ LAV++G NV+ ++L+ KCG D ++F+ MP RN VSW A++A + +
Sbjct: 120 GTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVE 179
Query: 75 EWEV 78
+V
Sbjct: 180 SGKV 183
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC +R G Q L +RSGF +N +V SSLI K G D K FE+ + V
Sbjct: 416 SCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVP 475
Query: 65 WTAIIAAFAQ 74
W +++ +AQ
Sbjct: 476 WNSMMFGYAQ 485
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI---DVYKMFEKMPV 59
+++C R+ GGT L ++GF +V ++LI+ + EN D YK F+ + +
Sbjct: 311 ISACAEHRD-HGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLL 369
Query: 60 RNVVSWTAIIAAFAQ 74
++ VSW +++ ++Q
Sbjct: 370 KDTVSWNSMLTGYSQ 384
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ + G ++R G L + +G V +V++GSSL+ GKC D K+F++MP RN
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRN 270
Query: 62 VVSWTAIIAAFAQ 74
VV+WTA+IA + Q
Sbjct: 271 VVTWTALIAGYVQ 283
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + C +++ N G++LI KCG + +FE++ +NV
Sbjct: 313 LSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNV 372
Query: 63 VSWTAIIAAFA 73
+WTA+I FA
Sbjct: 373 YTWTAMINGFA 383
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ + G ++R G L + +G V +V++GSSL+ GKC D K+F++MP RN
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRN 270
Query: 62 VVSWTAIIAAFAQ 74
VV+WTA+IA + Q
Sbjct: 271 VVTWTALIAGYVQ 283
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + C +++ N G++LI KCG + +FE++ +NV
Sbjct: 313 LSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNV 372
Query: 63 VSWTAIIAAFA 73
+WTA+I FA
Sbjct: 373 YTWTAMINGFA 383
>gi|302141901|emb|CBI19104.3| unnamed protein product [Vitis vinifera]
Length = 457
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + + G Q ++ F +V++G+SL+ KCGE +D K+F+ M RN
Sbjct: 271 LKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNT 330
Query: 63 VSWTAIIAAFAQ 74
V+WT+IIA +A+
Sbjct: 331 VTWTSIIAGYAR 342
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q V+ + N+ V S+L+ F +CG+ + F++MP R+VV W
Sbjct: 174 CSKRLDFELGRQIHACIVKDNW-RNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVCW 232
Query: 66 TAIIAAFAQE 75
T +I A +Q+
Sbjct: 233 TTMITACSQQ 242
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 43 KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
K G+ ++ K+F+KMP RNVVSWTA++ +++
Sbjct: 110 KFGKLVEARKVFDKMPERNVVSWTAVVNGYSR 141
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + V G N Y+GS+LIS KCGE + ++F+ MP R+ ++
Sbjct: 228 ACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFIT 287
Query: 65 WTAIIAAFAQEWEVD 79
W A I+A+AQ D
Sbjct: 288 WNAAISAYAQNGMAD 302
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q A G +++V ++LI KCG ++F MP +N
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKND 386
Query: 63 VSWTAIIAAFA 73
SW A+I+A A
Sbjct: 387 ASWNAMISALA 397
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + IR C + G + + +S+++ +CGEN K+F+++ +++VS
Sbjct: 126 ACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVS 185
Query: 65 WTAIIAAFAQ 74
W ++++ +A+
Sbjct: 186 WNSLLSGYAK 195
>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Brachypodium distachyon]
Length = 689
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q Q LA +SG NV+ S+L+ KCG D ++F+ MP RN VSW A+IA + +
Sbjct: 110 GAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVE 169
Query: 75 EWEV 78
+V
Sbjct: 170 SGKV 173
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q + SGF +N +V SSLI K G D K FE+ + V
Sbjct: 406 SCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVP 465
Query: 65 WTAIIAAFAQ 74
W ++I +AQ
Sbjct: 466 WNSMIFGYAQ 475
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + V G N Y+GS+LIS KCGE + ++F+ MP R+ ++
Sbjct: 228 ACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFIT 287
Query: 65 WTAIIAAFAQEWEVD 79
W A I+A+AQ D
Sbjct: 288 WNAAISAYAQNGMAD 302
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q A G +++V ++LI KCG ++F MP +N
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKND 386
Query: 63 VSWTAIIAAFA 73
SW A+I+A A
Sbjct: 387 ASWNAMISALA 397
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + IR C + G + + +S+++ +CGEN K+F+++ +++VS
Sbjct: 126 ACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVS 185
Query: 65 WTAIIAAFAQ 74
W ++++ +A+
Sbjct: 186 WNSLLSGYAK 195
>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
Length = 696
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q Q LA++SG NV+ S+L+ KCG D ++F+ MP RN VSW A+IA + +
Sbjct: 112 GAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTE 171
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L + SGF +N +V SSLI K G D K FE+ + V W A+I +AQ
Sbjct: 420 GKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479
Query: 75 EWEVD 79
+ +
Sbjct: 480 HGQAE 484
>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 696
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q Q LA++SG NV+ S+L+ KCG D ++F+ MP RN VSW A+IA + +
Sbjct: 112 GAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTE 171
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L + SGF +N +V SSLI K G D K FE+ + V W A+I +AQ
Sbjct: 420 GKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479
Query: 75 EWEVD 79
+ +
Sbjct: 480 HGQAE 484
>gi|255541017|ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550688|gb|EEF52175.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 954
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + C +++GFV ++ VGSSL + KCG D YK+FE++PV++ +SWT++I+ F +
Sbjct: 470 GREIHCYILKTGFVLDLSVGSSLFTMYSKCGSIGDSYKVFEQIPVKDNISWTSMISGFTE 529
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S + G Q ++ +++VG+++++ KCG+ +D K F +MPVRNV
Sbjct: 259 LTACASLEEVELGKGIQGWVIKC-CAKDIFVGTAIVNMYAKCGDIVDAVKEFSRMPVRNV 317
Query: 63 VSWTAIIAAF 72
VSWTAI++ F
Sbjct: 318 VSWTAIVSGF 327
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GTQ V+ G ++V VGSSL++ KCG D +K F ++ +++SWT +IA+ AQ
Sbjct: 672 GTQLHAHLVKLGLDSDVSVGSSLVTVYSKCGSIEDCWKAFNQIDDADLISWTTMIASCAQ 731
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q LA ++GF +N +V + +I + G D ++F + NV
Sbjct: 158 LSACAALETPNLGEQVYSLATKNGFYSNGHVRAGMIDLLARNGRFGDALRVFYDVSCENV 217
Query: 63 VSWTAIIAAFAQEWE 77
V W +II+ + E
Sbjct: 218 VCWNSIISGAVKSGE 232
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ S +++ G + A R+ VG +L++ KCG KMF+ + V++
Sbjct: 559 LSAASSIHSLQKGKEIHGYAYRARLGDEALVGGALVNMYSKCGALESARKMFDLLAVKDQ 618
Query: 63 VSWTAIIAAFAQ 74
VS +++++ +AQ
Sbjct: 619 VSCSSLVSGYAQ 630
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
F +N V +SL+ + K G K+F+ +P +NV+SW II+ +
Sbjct: 81 FNSNTVVANSLLDWYCKSGALFYALKVFDTIPNKNVISWNVIISGY 126
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN 61
+++C I+ Q C +++G+ + VG++LI+ K +F +M V+N
Sbjct: 359 ISACAKPHFIKEAIQIHCWILKTGYYLDPVVGAALINMYAKLHAISSSEMVFREMEGVKN 418
Query: 62 VVSWTAIIAAFAQ 74
WT +I++FA+
Sbjct: 419 PGIWTIMISSFAK 431
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG ++R G + ++ G V +V+VG++L+ GKCG + K+F+ MP N+
Sbjct: 153 IKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNL 212
Query: 63 VSWTAIIAAFAQ 74
VSW ++I AF++
Sbjct: 213 VSWNSMICAFSE 224
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++++ G + +R+G + +VG+SL+S CG+ +F++M +N+VS
Sbjct: 460 ACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVS 519
Query: 65 WTAIIAAFAQ 74
W A+I+ ++Q
Sbjct: 520 WNAMISGYSQ 529
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C + G LAV+ G V V ++++ KCG + F K +
Sbjct: 255 LPV--CAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNK 312
Query: 61 NVVSWTAIIAAFAQEWEVDMCYTFI 85
NVVSW +I+AF+ E +V+ + +
Sbjct: 313 NVVSWNTMISAFSLEGDVNEAFNLL 337
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYV-GSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +CG+ ++I G + S N YV + LI CG +D +F+ M +N
Sbjct: 50 LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109
Query: 62 VVSWTAIIAAFAQ 74
++ W A+++ + +
Sbjct: 110 LIQWNALVSGYTR 122
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + +++ + +VG S+I K G + K+F+ + +NV S
Sbjct: 561 ACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVAS 620
Query: 65 WTAIIAA 71
W AII A
Sbjct: 621 WNAIIVA 627
>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SCG ++ C A+++ + +++VGSS+I KCG+ + +F++MP RNVVS
Sbjct: 130 SCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVS 189
Query: 65 WTAIIAAFAQEWEVD 79
W+ +I + Q E D
Sbjct: 190 WSGLIYGYVQLGEDD 204
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG + ++ G L+ ++ F ++ +V SSLIS KCG + Y +FE++ VRN+ W
Sbjct: 234 CGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMW 293
Query: 66 TAIIAAFAQEWEVDMCY 82
A++ A AQ D +
Sbjct: 294 NAMLIACAQHAHTDKTF 310
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G CL +++G+ +V+VGSSL+ KCG+ + +F++MP RNVVSW+ +I + Q
Sbjct: 174 GKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQ 233
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CGS + G Q L ++ + + +VGSSLIS KCG Y++F+++P++N+ W
Sbjct: 266 CGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMW 325
Query: 66 TAIIAAFAQ 74
A++ A AQ
Sbjct: 326 NAMLIACAQ 334
>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
Length = 696
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q Q LA++SG NV+ S+L+ KCG D ++F+ MP RN VSW A+IA + +
Sbjct: 112 GAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTE 171
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L + SGF +N +V SSLI K G D K FE+ + V W A+I +AQ
Sbjct: 420 GKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479
Query: 75 EWEVD 79
+ +
Sbjct: 480 HGQAE 484
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C + G Q CLAV+SGF +V V ++++ GKC ++ Y +F++M R+ V
Sbjct: 361 SACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSV 420
Query: 64 SWTAIIAAFAQEWEVDMCY 82
SW AIIAA Q + CY
Sbjct: 421 SWNAIIAALEQ----NECY 435
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG ++ G Q LAV++G +V GS+L+ GKC D + F M RN
Sbjct: 158 LKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNS 217
Query: 63 VSWTAIIAAFAQ 74
VSW A IA Q
Sbjct: 218 VSWGAAIAGCVQ 229
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + I G Q ++ + + Y+ S+L+ KCG D MFEK + VS
Sbjct: 564 TCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVS 623
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 624 WNAMICGYA 632
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
SGF+ +V + L+ +CG + +F+ MP R+ VSW ++ A+ + D
Sbjct: 48 SGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTD 102
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ G A++SG + +V S+++ KCG + K+ +++ + +
Sbjct: 461 LKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQEL 520
Query: 63 VSWTAIIAAFA 73
VSW +II+ F+
Sbjct: 521 VSWNSIISGFS 531
>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
Length = 785
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S R G Q QCLA++ GF +G+S I C + G+ V + F++M R+V
Sbjct: 421 MNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDV 480
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I++ AQ
Sbjct: 481 VSWSAVISSHAQ 492
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ F + Y+GS+LI G D Y+ F +P +++V+WT++I+ Q
Sbjct: 332 GKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQ 391
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++R G + V G V++ +SL S CGE + ++F+ + VSW
Sbjct: 113 CSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSW 172
Query: 66 TAIIAAFAQ 74
++++ + +
Sbjct: 173 NSLLSGYVR 181
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G Q Q ++ GF ++VYVG++LI G C + D K+F++M RNV
Sbjct: 120 LKACASFLGLTAGRQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTERNV 179
Query: 63 VSWTAIIAAFAQEWEVDM 80
VSW +I+ A + + ++
Sbjct: 180 VSWNSIMTALVENGKFNL 197
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 46/69 (66%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +++ G + L + +GF +N++V ++++S KC + + YKMFE+M +++VSW
Sbjct: 155 CGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSW 214
Query: 66 TAIIAAFAQ 74
T ++A +AQ
Sbjct: 215 TTLVAGYAQ 223
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
LAVR+ NV+V ++L+ KCG K+F+ M R+V++W A+I +
Sbjct: 472 LAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYG 524
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+ +R G A RSGF + V V ++L+ KCG +F+ M + VVSW +I
Sbjct: 260 KALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMI 319
Query: 70 AAFAQEWEVDMCY-TFI 85
AQ E + + TF+
Sbjct: 320 DGCAQNGESEEAFATFL 336
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 47/70 (67%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++R G L++ +GF++NV+VG++L++ +C D K+F++M V +VVS
Sbjct: 136 ACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVS 195
Query: 65 WTAIIAAFAQ 74
W +II ++A+
Sbjct: 196 WNSIIESYAK 205
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S G Q C AV S + N++VG+ L+ KCG + +F M V++VVSW
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 66 TAIIAAFAQ 74
A++A ++Q
Sbjct: 299 NAMVAGYSQ 307
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C S +R G Q A+R+ A ++V + LI KCG D +F+ M +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543
Query: 62 VVSWTAIIAAFA 73
V+WT+++ +
Sbjct: 544 EVTWTSLMTGYG 555
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C T +++ G +R+GF +N+++ + LI F K GE I+ K+F++MP RNVVSW
Sbjct: 47 CIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSW 106
Query: 66 TAIIAAFAQ 74
TA I+ +A+
Sbjct: 107 TAQISGYAK 115
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C R + G Q ++ F+ N++V S+L+ KCG D +FE M R+VVS
Sbjct: 147 ACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVS 206
Query: 65 WTAIIAAFAQE 75
W A+I +A +
Sbjct: 207 WNAVIGGYAAQ 217
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G Q LA++ +V G++L+ K GE D + F +M +NV+SW
Sbjct: 351 CADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISW 410
Query: 66 TAIIAAFAQ 74
T++I + +
Sbjct: 411 TSLITGYGK 419
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C T+ G Q CLA++SGF ++ V ++++ GKC ++ Y +F+ M ++ V
Sbjct: 401 SACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSV 460
Query: 64 SWTAIIAAFAQEWEVD 79
SW AIIAA Q D
Sbjct: 461 SWNAIIAALEQNGHYD 476
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + + G Q LAV++G +V GS+L+ GKC D F MP RN
Sbjct: 198 LKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNW 257
Query: 63 VSWTAIIAAFAQ 74
VSW A IA Q
Sbjct: 258 VSWGAAIAGCVQ 269
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + I G Q ++ + + Y+ S+L+ KCG+ D +FEK+ R+ VS
Sbjct: 604 TCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVS 663
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 664 WNAMICGYA 672
Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + R++ G ++SG ++ +V S+++ KCG + K+ +++ + V
Sbjct: 501 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQV 560
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
VSW AI++ F+ E + F
Sbjct: 561 VSWNAILSGFSLNKESEEAQKF 582
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG T + G + L V +GFV +V +GS LI KC + + ++F+K+PVRN+
Sbjct: 52 LTACGRTGFVNLGKKIHALIVVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNL 111
Query: 63 VSWTAIIAAFAQ 74
V WT++I +A+
Sbjct: 112 VCWTSLIVGYAR 123
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++CG + G R+G N+ V ++LI KCG+ +++F M +++
Sbjct: 153 VSACGHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSKCGDIEKAHQIFNGMVKKDL 212
Query: 63 VSWTAIIAAFA 73
SWTA+I+ FA
Sbjct: 213 FSWTAMISGFA 223
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C T+ G Q CLA++SGF ++ V ++++ GKC ++ Y +F+ M ++ V
Sbjct: 359 SACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSV 418
Query: 64 SWTAIIAAFAQEWEVD 79
SW AIIAA Q D
Sbjct: 419 SWNAIIAALEQNGHYD 434
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + + G Q LAV++G +V GS+L+ GKC D F MP RN
Sbjct: 156 LKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNW 215
Query: 63 VSWTAIIAAFAQ 74
VSW A IA Q
Sbjct: 216 VSWGAAIAGCVQ 227
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + I G Q ++ + + Y+ S+L+ KCG+ D +FEK+ R+ VS
Sbjct: 562 TCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVS 621
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 622 WNAMICGYA 630
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + R++ G ++SG ++ +V S+++ KCG + K+ +++ + V
Sbjct: 459 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQV 518
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
VSW AI++ F+ E + F
Sbjct: 519 VSWNAILSGFSLNKESEEAQKF 540
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
V SGFV N +V + L+ +C ++F+ MP R+ VSW ++ A++ ++
Sbjct: 44 VVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDI 99
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C T+ G Q CLA++SGF ++ V ++++ GKC ++ Y +F+ M ++ V
Sbjct: 359 SACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSV 418
Query: 64 SWTAIIAAFAQEWEVD 79
SW AIIAA Q D
Sbjct: 419 SWNAIIAALEQNGHYD 434
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + + G Q LAV++G +V GS+L+ GKC D F MP RN
Sbjct: 156 LKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNW 215
Query: 63 VSWTAIIAAFAQ 74
VSW A IA Q
Sbjct: 216 VSWGAAIAGCVQ 227
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + I G Q ++ + + Y+ S+L+ KCG+ D +FEK+ R+ VS
Sbjct: 562 TCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVS 621
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 622 WNAMICGYA 630
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + R++ G ++SG ++ +V S+++ KCG + K+ +++ + V
Sbjct: 459 LKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQV 518
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
VSW AI++ F+ E + F
Sbjct: 519 VSWNAILSGFSLNKESEEAQKF 540
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + L + F +V VG+ LIS KCG D +++F K+P +NV
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNV 681
Query: 63 VSWTAIIAAFAQ 74
SWT++IA +AQ
Sbjct: 682 YSWTSMIAGYAQ 693
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C RN+ G + L +++G+ +++VG++LI+ KCG+ D K+F+ +P R++
Sbjct: 218 LNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDL 277
Query: 63 VSWTAIIAAFAQ 74
V+WT++I A+
Sbjct: 278 VTWTSMITGLAR 289
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + G+ +YVG++++S KCG D ++F+ + RNVVS
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380
Query: 65 WTAIIAAFAQEWEVDMCYTF 84
WTA+IA FAQ +D + F
Sbjct: 381 WTAMIAGFAQHGRIDEAFLF 400
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S ++ G Q Q + +G+ ++ V ++L+S KCG D +++FEK+ +NVV+
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481
Query: 65 WTAIIAAFAQEWEVD 79
W A+I A+ Q + D
Sbjct: 482 WNAMITAYVQHEQYD 496
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S+ ++ G L +++G ++++V ++L+S CG+ + +F MP R++VSW
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583
Query: 66 TAIIAAFAQEWEVDMCYTF 84
IIA F Q + + + +
Sbjct: 584 NTIIAGFVQHGKNQVAFDY 602
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +N+ G + +SG ++++ ++LI+ KCG I ++F+ M ++V SW
Sbjct: 120 CIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSW 179
Query: 66 TAIIAAFAQ 74
++ + Q
Sbjct: 180 NLLLGGYVQ 188
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 47/78 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G LAV++ N++VGS+L+ GKCG + ++F ++P RN+
Sbjct: 317 LSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNL 376
Query: 63 VSWTAIIAAFAQEWEVDM 80
V+W A+I +A + ++DM
Sbjct: 377 VTWNAMIGGYAHQGDIDM 394
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-N 61
+ +C + G Q VR G+ +V V + LI F GKCG+ + +F ++ R N
Sbjct: 216 LNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKN 275
Query: 62 VVSWTAIIAAFAQEWEVD-MCYTFI 85
VVSW +++AA Q E + C F+
Sbjct: 276 VVSWCSMLAALVQNHEEERACMVFL 300
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LA++ G + +V+VG S K G D MF++MP RN+ +W A I+ Q
Sbjct: 127 GKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQ 186
Query: 75 E 75
+
Sbjct: 187 D 187
>gi|297834252|ref|XP_002885008.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
gi|297330848|gb|EFH61267.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G Q Q ++ GF ++VYVG++LI G C + D KMF++M RN
Sbjct: 114 LKACASFLGLTAGRQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTYDARKMFDEMTDRNF 173
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
VSW +I+ A + + ++ +
Sbjct: 174 VSWNSIMTALVENGKFNLVF 193
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C + G Q CLA++SGF +V V ++++ GKC ++ Y +F++M R+ V
Sbjct: 346 SACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSV 405
Query: 64 SWTAIIAAFAQEWEVDMCY 82
SW AIIAA Q + CY
Sbjct: 406 SWNAIIAALEQ----NECY 420
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG ++ G Q +AV++G +V GS+L+ GKC D + F M RN
Sbjct: 143 LKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNS 202
Query: 63 VSWTAIIAAFAQ 74
VSW A IA Q
Sbjct: 203 VSWGAAIAGCVQ 214
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + I G Q ++ + + Y+ S+L+ KCG D MFEK + VS
Sbjct: 549 TCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVS 608
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 609 WNAMICGYA 617
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ G+ A++SG + +V S+++ KCG + K+ +++ + +
Sbjct: 446 LKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQEL 505
Query: 63 VSWTAIIAAFA 73
VSW +II+ F+
Sbjct: 506 VSWNSIISGFS 516
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
SGF+ +V + L+ +CG +F+ MP R+ VSW ++ A+A
Sbjct: 33 SGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAH 82
>gi|255575334|ref|XP_002528570.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532014|gb|EEF33825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 542
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVV 63
+CG+ + G C +++SG +NVYVGS+L+ KCG I + ++ F+ MP RN+V
Sbjct: 384 ACGNIAALMHGKAAHCFSLKSGISSNVYVGSALVDMYAKCGR-IHISRLCFDIMPTRNLV 442
Query: 64 SWTAIIAAFA 73
SW A++A +A
Sbjct: 443 SWNALMAGYA 452
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ Q C+A SGF ++ V SSL+ KC D +K+F+K+ +V
Sbjct: 110 IKACAGLSFLKTAKQVHCMASVSGFGSDSRVLSSLVHMYIKCNRLKDAHKVFDKLSQPDV 169
Query: 63 VSWTAIIAAFAQ 74
V+++A++A +A+
Sbjct: 170 VAYSALLAGYAR 181
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G Q AVRSGF +++YV +++I KCG+ ++ +++F M +VVS
Sbjct: 242 ACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVS 301
Query: 65 WTAIIAAFAQ 74
W+ +IA ++Q
Sbjct: 302 WSTLIAGYSQ 311
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
ANVYV ++I KCG D +MFE+MP R++ SWTA+I
Sbjct: 165 ANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALI 205
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +R G + +SG NV VG+SLI KCG K+F++M VRNV ++
Sbjct: 445 CTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTY 504
Query: 66 TAIIAA 71
+I+A
Sbjct: 505 NTMISA 510
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G ++ G + ++ G +++V VGS+LI CG + +FE ++++ W
Sbjct: 345 GKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWN 404
Query: 67 AIIAAF 72
++I +
Sbjct: 405 SMIVGY 410
>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 679
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 15 GTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF- 72
G Q V+ G+ ++V + +SL++F GKC E DVYK+F+++ R++VSW ++I+AF
Sbjct: 96 GKQIHAHVVKYGYESSSVAIANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFC 155
Query: 73 -AQEWEVDM 80
AQEWE+ +
Sbjct: 156 RAQEWELAL 164
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S + G + AVR+ + V VGS+L+ KCG ++F++MP++NV++W
Sbjct: 509 CASLAALAKGKEIHAYAVRNALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNVITW 568
Query: 66 TAIIAAFA 73
I+ A+
Sbjct: 569 NVIVMAYG 576
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + G + A+RSG + N +VGS+L+ CG+ ++F+ + R
Sbjct: 291 ACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTG 350
Query: 64 SWTAIIAAFAQ 74
W A+IA +AQ
Sbjct: 351 LWNAMIAGYAQ 361
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q +RSG + NV+ GS L+ KCG D ++FE+MP RN VSW A+I+A A
Sbjct: 471 GKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHA 529
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+++ G Q C A+ + + ++VG+SL+ KC + +F+ +P R VSWTA+I+
Sbjct: 366 SLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425
Query: 71 AFAQE 75
+ Q+
Sbjct: 426 GYVQK 430
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L+V +GF + VG+ ++ F K ++ +F++MP + VS+ +I++++Q
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + GT+ A++ GF +NVYVG++L+ KCG+ ++FEK+P +N
Sbjct: 341 LSACAAVGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNE 400
Query: 63 VSWTAIIAAFA 73
SW A+I A
Sbjct: 401 ASWNALICGLA 411
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VGS+L+ KCGE + ++F+ + ++ V+W A+I +AQ
Sbjct: 270 VGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQ 311
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ A+ SG + V V ++LI+ GKCG +++F +M +R+
Sbjct: 378 ISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDE 437
Query: 63 VSWTAIIAAFAQ 74
VSWTA+++ +AQ
Sbjct: 438 VSWTALVSGYAQ 449
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG + G Q +R+ + N++VGS+L+ KC +F KM +NV
Sbjct: 277 LTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNV 336
Query: 63 VSWTAIIAAFAQ 74
+SWTA++ + Q
Sbjct: 337 ISWTAMLVGYGQ 348
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
N++ ++L+S K G D+ ++F+ MP +VVSW ++++ +A
Sbjct: 70 NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYA 113
>gi|242090301|ref|XP_002440983.1| hypothetical protein SORBIDRAFT_09g018390 [Sorghum bicolor]
gi|241946268|gb|EES19413.1| hypothetical protein SORBIDRAFT_09g018390 [Sorghum bicolor]
Length = 454
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G A+R GF+ +VYV S+L+ KCG D +F+ MP RNVVSW A+I +A
Sbjct: 312 GRSAHSFALRKGFLHDVYVSSALVDMYAKCGRVKDARTIFDAMPSRNVVSWNAMIGGYAM 371
Query: 75 EWE 77
E
Sbjct: 372 HGE 374
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFA 73
+G V + +V SSL+ + G +D +F+ MP R VV W+A++AA A
Sbjct: 46 TGLVRDPFVASSLLHAYLRLGATVDARAVFDGMPPPQRTVVGWSALVAAHA 96
>gi|224079119|ref|XP_002305756.1| predicted protein [Populus trichocarpa]
gi|222848720|gb|EEE86267.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q QC ++SGF V +GS+LI KCG D ++F MPVRNV SWT++I + +
Sbjct: 299 GQQVQCQLMKSGFFNGVKMGSALIDMYSKCGRIEDARRVFNYMPVRNVFSWTSMIDGYGK 358
Query: 75 EWE 77
E
Sbjct: 359 NGE 361
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G Q Q ++ GF +VYVG++LI G C + D K+F++M RNV
Sbjct: 120 LKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNV 179
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
VSW +I+ A + ++++ +
Sbjct: 180 VSWNSIMTALVENGKLNLVF 199
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S+ + G Q L +++ F ++++VGSSL+ K G+ + ++F+ +P R+V
Sbjct: 118 LTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDV 177
Query: 63 VSWTAIIAAFAQ 74
VS TAII+ +AQ
Sbjct: 178 VSCTAIISGYAQ 189
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C S IR G + +++ + VY+ + LI KC D ++ ++MP RNV
Sbjct: 17 LTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNV 76
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 77 VSWTAMISGYSQ 88
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +R+ V + +SLI KCG ++F+ MP R V+SW A++ +++
Sbjct: 231 GRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSK 290
>gi|357475145|ref|XP_003607858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508913|gb|AES90055.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 708
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + + GTQ V+ ++V++G+SLI KCGE + K+F++M VRN
Sbjct: 358 LKACGENKAFKCGTQLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNT 417
Query: 63 VSWTAIIAAFAQ 74
+WT+II+ +A+
Sbjct: 418 ATWTSIISGYAR 429
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 20 CLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C + + ++NV+V S+LI KCG D +++F+ MP RN+VSW A+I +A+
Sbjct: 563 CAKLETPALSNVFVNSALIYMYAKCGYIADAFQVFDNMPERNLVSWKAMILGYAR 617
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ + G + ++S + N+Y+ ++L+ F +C + + + + +P+R+V
Sbjct: 459 MTACGTIKASLIGREVHAQKIKSVILTNMYIETTLVWFYCRCKDYSHAFNVLKYIPLRDV 518
Query: 63 VSWTAIIAAFAQ 74
VSWTAII+ A+
Sbjct: 519 VSWTAIISGCAR 530
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
N+ V S++++F KCG+ ++ F++M R+VV WT II A +Q
Sbjct: 284 NLIVDSAVVNFYSKCGKISSAFRTFDRMAKRDVVCWTTIITACSQ 328
>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 682
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S ++ G Q A++ NVYVGS+L+ GKC D + FE +P +NVVSW
Sbjct: 219 CASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSW 278
Query: 66 TAIIAAFAQ 74
TA++ A+ Q
Sbjct: 279 TAVMTAYTQ 287
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +R G +++G ++ V ++L++ K G D +++F MP+R+V
Sbjct: 317 LNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDV 376
Query: 63 VSWTAIIAAFAQ 74
VSW II +A
Sbjct: 377 VSWNLIITGYAH 388
>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
Length = 696
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+G ++ LA R GF NV V ++L++ GKCG ++ K+F+ M RNV+SWT++IAA+
Sbjct: 231 KGRKVHRHLASR-GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAY 289
Query: 73 AQ 74
AQ
Sbjct: 290 AQ 291
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + + G + + +GF ++ + ++L+ KCG D ++FE M ++++
Sbjct: 17 VAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDL 76
Query: 63 VSWTAIIAAFAQEWEVDM 80
+W++II+A+A+ +M
Sbjct: 77 FAWSSIISAYARAGRGEM 94
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 36 SLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
SL++ KC E ++ K+FE M RNV S+TA+I+A+ Q E
Sbjct: 151 SLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGE 192
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V +A+ + +SL+S +CG D ++F +M R+ S A+IAAF Q
Sbjct: 337 VVEAHLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQ 388
>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
Length = 716
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+G ++ LA R GF NV V ++L++ GKCG ++ K+F+ M RNV+SWT++IAA+
Sbjct: 251 KGRKVHRHLASR-GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAY 309
Query: 73 AQ 74
AQ
Sbjct: 310 AQ 311
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + + G + + +GF ++ + ++L+ KCG D ++FE M ++++
Sbjct: 37 VAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDL 96
Query: 63 VSWTAIIAAFAQEWEVDM 80
+W++IIAA+A+ +M
Sbjct: 97 FAWSSIIAAYARAGRGEM 114
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 36 SLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
SL++ KC E ++ K+FE M RNV S+TA+I+A+ Q E
Sbjct: 171 SLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGE 212
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+A+ + +SL+S +CG D ++F +M R+ S A+IAAF Q
Sbjct: 362 LASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQ 408
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S+ + G Q L +++ F ++++VGSSL+ K G+ + ++F+ +P R+V
Sbjct: 585 LTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDV 644
Query: 63 VSWTAIIAAFAQ 74
VS TAII+ +AQ
Sbjct: 645 VSCTAIISGYAQ 656
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C S IR G + +++ + VY+ + LI KC D ++ ++MP RNV
Sbjct: 484 LTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNV 543
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 544 VSWTAMISGYSQ 555
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +R+ V + +SLI KCG ++F+ MP R V+SW A++ +++
Sbjct: 698 GRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSK 757
>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
Length = 711
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 38/68 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L V+ G+ +VY GS+L+ KC D Y +F+ MPVRN VSW A+I F Q
Sbjct: 121 GQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQ 180
Query: 75 EWEVDMCY 82
+ D +
Sbjct: 181 VGDRDTAF 188
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V++GF +N +V SSLI KCG D +K FE + ++
Sbjct: 417 SCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSIT 476
Query: 65 WTAIIAAFAQEWEVDM 80
W +I+ A+AQ + D+
Sbjct: 477 WNSIMFAYAQHGQGDV 492
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKC--GENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
C A +SG ++++YV ++++ KC G+ K+F++MP ++ V+W +I + +
Sbjct: 22 HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81
Query: 77 EVDMCYTFI 85
+ + F+
Sbjct: 82 NLGAAWEFL 90
>gi|147836510|emb|CAN70889.1| hypothetical protein VITISV_005594 [Vitis vinifera]
Length = 630
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + R++R G+ ++SG NV+V +SL+ KCG D K+F+ MP + V
Sbjct: 49 LSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKTV 108
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT++++ Q D
Sbjct: 109 VSWTSMMSGHCQRGAFD 125
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +++ G R+G + +++V +SL+ GKCG K+ E+MPVR++
Sbjct: 363 IQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVRDL 422
Query: 63 VSWTAIIAAFA 73
SW ++IAA+
Sbjct: 423 GSWNSLIAAYG 433
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R+++ C +++GFV + ++ +SLI K G + K+ +++ R+V
Sbjct: 149 LQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDV 208
Query: 63 VSWTAIIAA 71
VSWT++I+
Sbjct: 209 VSWTSVISG 217
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ ++ G Q ++ GF V +SLI + + +++F KM R++VSW
Sbjct: 261 CSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSW 320
Query: 66 TAIIAAFAQ 74
+I++ +
Sbjct: 321 NTMISSLVK 329
>gi|449442080|ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG R ++ G Q L ++ +V+VG+SL+ KCG D ++F+ M RN
Sbjct: 295 LKACGEERELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNT 354
Query: 63 VSWTAIIAAFAQE 75
V+WT+IIA +A+E
Sbjct: 355 VTWTSIIAGYARE 367
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G A ++ ++NV+VGS+LI KCG + ++F+ MPVRN+
Sbjct: 497 LKACAKMEAVLQGKMIHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNL 556
Query: 63 VSWTAIIAAFAQ 74
VSW A+I +A+
Sbjct: 557 VSWKAMILCYAR 568
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS G + V++ F N+++GS+L+ F KC + + + MP+R+V
Sbjct: 396 LRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTLVWFYCKCRNQLKASMVLQLMPLRDV 455
Query: 63 VSWTAIIAAFAQ 74
VSWTAII+ A
Sbjct: 456 VSWTAIISGCAH 467
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S+R+++ +R+ +YVG++L+S + G +D K+F++MP+R+VV+WTA
Sbjct: 99 SSRSVKKLRAVHAFILRNFTSFGIYVGNNLLSSYLRLGMLVDARKVFDEMPMRSVVTWTA 158
Query: 68 IIAAF 72
II +
Sbjct: 159 IINGY 163
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q + V+ G N+ V S++I F +C + + FE+M R+VV W
Sbjct: 198 CAKRLDFELGRQIHGVIVK-GNRGNLIVDSAIIYFYAQCKDISSAFVAFERMRRRDVVCW 256
Query: 66 TAIIAAFAQE 75
T++I + +Q+
Sbjct: 257 TSMITSCSQQ 266
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 44/63 (69%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+R G Q +A ++GF+ V V ++L++F G CG+ D K+F++M R+VVSWTA+++A
Sbjct: 134 LREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSA 193
Query: 72 FAQ 74
F +
Sbjct: 194 FTR 196
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G R G +V+VG+S++ KCG +F++MP++NV
Sbjct: 324 LSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNV 383
Query: 63 VSWTAIIAAFA 73
SW A+I FA
Sbjct: 384 SSWNALINGFA 394
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRN 61
+ +CG+ R G R N+ VG++L+ KC E +D+ ++F+ + R+
Sbjct: 223 LVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKC-EKLDLARRVFDMLLARD 281
Query: 62 VVSWTAIIAAFAQ 74
+VSWT +I+ Q
Sbjct: 282 IVSWTVMISGLVQ 294
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + G ++R G + +RSGF + +YV +SL+ CG+ YK+F+KMP +++
Sbjct: 128 LKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDL 187
Query: 63 VSWTAIIAAFAQ 74
V+W ++I FA+
Sbjct: 188 VAWNSVINGFAE 199
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G ++ ++ G N++ + L+ +CG + +F++M +N
Sbjct: 229 LSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS 288
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 289 VSWTSLIVGLA 299
>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like, partial [Brachypodium distachyon]
Length = 735
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 41/58 (70%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G + A+RSG +A+V+ G++L++F CG D ++F++MP R+VVSW +++++F
Sbjct: 95 GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSF 152
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +CG + G L +++G + V +G++L+ GK G K+FE MP RN
Sbjct: 184 VPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNE 243
Query: 63 VSWTAIIAAF 72
VSW + I F
Sbjct: 244 VSWNSAIGCF 253
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + +++ +++V +SL+ K G +FEK+ VRNVVSW A+IA Q
Sbjct: 297 GREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQ 356
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G Q ++R+G + ++++ ++LI KCG+ +F+ + ++ VS
Sbjct: 388 ACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVS 446
Query: 65 WTAIIAAFAQ 74
+ +I ++Q
Sbjct: 447 YNTLILGYSQ 456
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + AVR G +V+V +SLI GKCGE + K+F++M RNV
Sbjct: 178 IKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNV 237
Query: 63 VSWTAIIAAFA 73
VSWTA+IA +A
Sbjct: 238 VSWTAMIAGYA 248
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + G C ++R+G +VYVGS+LI KCG + F+ MP RN+VS
Sbjct: 353 ACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVS 412
Query: 65 WTAIIAAFA 73
W +++A +A
Sbjct: 413 WNSLMAGYA 421
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G Q C A+ SG + V SSL+ + D +F+K+P V
Sbjct: 81 IKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGV 140
Query: 63 VSWTAIIAAFAQEWEV 78
V+ +A+I+ FA++ V
Sbjct: 141 VTSSALISRFARKGRV 156
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + AVR G +V+V +SLI GKCGE + K+F++M RNV
Sbjct: 130 IKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNV 189
Query: 63 VSWTAIIAAFA 73
VSWTA+IA +A
Sbjct: 190 VSWTAMIAGYA 200
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+++IS KCG+ KMF++MP RNVVS+T +I +A+
Sbjct: 224 NAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAK 263
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG R+ R + + R NV +++I K G+ +FE+ P R+VV+W
Sbjct: 233 CGDLRSAR--KMFDEMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAW 285
Query: 66 TAIIAAFAQEWEV 78
+A+I EW V
Sbjct: 286 SALIFRVCAEWNV 298
>gi|115454183|ref|NP_001050692.1| Os03g0624800 [Oryza sativa Japonica Group]
gi|40737026|gb|AAR89039.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709901|gb|ABF97696.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|108709902|gb|ABF97697.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549163|dbj|BAF12606.1| Os03g0624800 [Oryza sativa Japonica Group]
gi|215712410|dbj|BAG94537.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 449
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C +T N+ G Q C A+R GF + ++LI KCG +F++M RNV
Sbjct: 204 LTACSATANLMYGMQVHCKALRGGFTLETILCNALIDMYAKCGRTTAARMVFDRMACRNV 263
Query: 63 VSWTAIIAAFAQ 74
VSW+++I A++
Sbjct: 264 VSWSSMIDAYSH 275
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + AVR G +V+V +SLI GKCGE + K+F++M RNV
Sbjct: 130 IKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNV 189
Query: 63 VSWTAIIAAFA 73
VSWTA+IA +A
Sbjct: 190 VSWTAMIAGYA 200
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
+++IS KCG+ KMF++MP RNVVS+T +I +A+ ++
Sbjct: 224 NAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDM 267
>gi|297741014|emb|CBI31326.3| unnamed protein product [Vitis vinifera]
Length = 513
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPV 59
+PV C R +R G + AV++GF+ NV + +SL+ KCG N+D +K+F+ M
Sbjct: 254 LPV--CAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKCG-NLDYSFKLFDGMDA 310
Query: 60 RNVVSWTAIIAAFAQEWEVDM 80
RNV+SWTA+I ++ + V M
Sbjct: 311 RNVISWTAMIDSYHRPDSVAM 331
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+ R G + L +++G V + + +SLI KCG+ MFE++ R+VV W A+IA
Sbjct: 59 DFRQGLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIA 118
Query: 71 AFAQ 74
F
Sbjct: 119 GFGH 122
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG R ++ G + ++ F + +V + +I GK G F+ +P + ++W
Sbjct: 338 CGELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAW 397
Query: 66 TAIIAAFA 73
TAII A+
Sbjct: 398 TAIIEAYG 405
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+ V++ S+LI KCG+ ++F RN VSWTA+++ + +D
Sbjct: 177 YSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLD 229
>gi|218186652|gb|EEC69079.1| hypothetical protein OsI_37958 [Oryza sativa Indica Group]
Length = 459
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 41/58 (70%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G + A+R G +A+V+ G++L++F CG+ D ++F++MP R+VVSW ++++AF
Sbjct: 140 GLELHASALRRGHLADVFTGNTLLAFYAACGKACDARRVFDEMPARDVVSWNSLVSAF 197
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + +++ +++V +SL+ K G +FE+M RNVVSW A+IA Q
Sbjct: 342 GREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQ 401
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +CG + + G LAV+ G V + ++L+ GK G+ ++F+ M +N
Sbjct: 229 VPACGMEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMRVFDGMLEQNE 288
Query: 63 VSWTAIIAAF 72
VSW + I F
Sbjct: 289 VSWNSAIGCF 298
>gi|125544921|gb|EAY91060.1| hypothetical protein OsI_12669 [Oryza sativa Indica Group]
Length = 449
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C +T N+ G Q C A+R GF + ++LI KCG +F++M RNV
Sbjct: 204 LTACSATANLMYGMQVHCKALRGGFTLETILCNALIDMYAKCGRTTAARMVFDRMACRNV 263
Query: 63 VSWTAIIAAFAQ 74
VSW+++I A++
Sbjct: 264 VSWSSMIDAYSH 275
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 44/63 (69%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+R G Q +A ++GF+ V V ++L++F G CG+ D K+F++M R+VVSWTA+++A
Sbjct: 134 LREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSA 193
Query: 72 FAQ 74
F +
Sbjct: 194 FTR 196
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G R G +V+VG+S++ KCG +F++MP++NV
Sbjct: 324 LSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNV 383
Query: 63 VSWTAIIAAFA 73
SW A+I FA
Sbjct: 384 SSWNALINGFA 394
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRN 61
+ +CG+ R G R N+ VG++L+ KC E +D+ ++F+ + R+
Sbjct: 223 LVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKC-EKLDLARRVFDMLLARD 281
Query: 62 VVSWTAIIAAFAQ 74
+VSWT +I+ Q
Sbjct: 282 IVSWTVMISGLVQ 294
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q+ L RSG++ + + G++LIS KCG ++ ++F++MP ++
Sbjct: 457 LSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDI 516
Query: 63 VSWTAIIAAFA 73
VSW A+I +A
Sbjct: 517 VSWNALIDGYA 527
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 9 TRNIRGGTQYQCLAVRSGFVA----NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
TR R G Q A R F + N ++++S + G D ++F+++P RN VS
Sbjct: 19 TRLARSG---QLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVS 75
Query: 65 WTAIIAA 71
W A+IAA
Sbjct: 76 WNAMIAA 82
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
N +++I+ C G D +F+ MP R+ SWT +++ +A+ E+ +
Sbjct: 72 NTVSWNAMIAACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGL 122
>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Glycine max]
Length = 945
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG R+I G L +R G ++++V +S+++ KCGE K+F +M RN
Sbjct: 191 LKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIFRRMDERNC 250
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW II + Q E++
Sbjct: 251 VSWNVIITGYCQRGEIE 267
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+++ G++ +AV++ V ++ +G+SLI K G+ +F+ M R+V SW +II
Sbjct: 369 KSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVYSWNSII 428
Query: 70 AAFAQ 74
+ Q
Sbjct: 429 GGYCQ 433
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 21 LAVRSGFV--ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE--W 76
L R G V N +V + L+S KCG + K+F++M RN+ +W+A+I A +++ W
Sbjct: 106 LHTRIGLVRKVNPFVETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKW 165
Query: 77 E 77
E
Sbjct: 166 E 166
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TS + ++ G + AV+S ++V+V +SL+SF KCG D +F ++P RN
Sbjct: 238 ITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNT 297
Query: 63 VSWTAIIAAFAQ 74
VSW A+I FAQ
Sbjct: 298 VSWNAVICGFAQ 309
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 31/103 (30%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC------------------ 44
+ S +NI G Q ++ G V+VGS+++ F K
Sbjct: 106 IHSSTGLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNV 165
Query: 45 -------------GENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G+ D ++F++MP RNVVSW A++ F+Q
Sbjct: 166 VSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQ 208
>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
Length = 691
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 44/70 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ CG + ++ G + +++G+ NVY+ +L+S ID YK+F++MPV+N+
Sbjct: 10 IRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNI 69
Query: 63 VSWTAIIAAF 72
V+WT +++A+
Sbjct: 70 VTWTTMVSAY 79
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + N+R G Q L V SG + VGS L+ K G D +K+F ++P +++V+W
Sbjct: 354 CINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAW 413
Query: 66 TAIIAAFAQ 74
+ ++ A+
Sbjct: 414 SGLLMGCAK 422
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S +I G Q ++ G+ ++LI KCGE D +F + R+VV W
Sbjct: 455 CSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDVVCW 514
Query: 66 TAIIAAFAQ 74
T II AQ
Sbjct: 515 TGIIVGCAQ 523
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ +IR GTQ LA+++GF +V+ ++L+ KCG+ K+F+KMP R++
Sbjct: 126 IKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSI 185
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT ++ ++D
Sbjct: 186 VSWTTMLYGLVSNSQLD 202
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
A ++GFV + ++G++LI KCG D K+F+ M +++ +W ++I +
Sbjct: 277 AHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLG 328
>gi|297742233|emb|CBI34382.3| unnamed protein product [Vitis vinifera]
Length = 705
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + R++R G+ ++SG NV+V +SL+ KCG D K+F+ MP + V
Sbjct: 49 LSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKTV 108
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT++++ Q D
Sbjct: 109 VSWTSMMSGHCQRGAFD 125
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +++ G R+G + +++V +SL+ GKCG K+ E+MPVR++
Sbjct: 427 IQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVRDL 486
Query: 63 VSWTAIIAAFA 73
SW ++IAA+
Sbjct: 487 GSWNSLIAAYG 497
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R+++ C +++GFV + ++ +SLI K G + K+ +++ R+V
Sbjct: 149 LQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDV 208
Query: 63 VSWTAIIAA 71
VSWT++I+
Sbjct: 209 VSWTSVISG 217
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ ++ G Q ++ GF V +SLI + + +++F KM R++VSW
Sbjct: 325 CSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSW 384
Query: 66 TAIIAAFAQ 74
+I++ +
Sbjct: 385 NTMISSLVK 393
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +R G C AV SGF + YV ++L++F KCG+ ++F++MP +++
Sbjct: 114 IKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSI 173
Query: 63 VSWTAIIAAFAQ 74
V+W ++++ F Q
Sbjct: 174 VAWNSLVSGFEQ 185
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C T + G+ + G NV +G++LI+ +CG+ ++F+KM NV
Sbjct: 215 LSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNV 274
Query: 63 VSWTAIIAAFA 73
+WTA+I+A+
Sbjct: 275 AAWTAMISAYG 285
>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 12 IRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
IR G LA + GF N VGSS +S +C E D K+F+++PVR+VV+WTA++
Sbjct: 125 IRSGMNLHALACKVGFFPENSAVGSSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVI 184
Query: 71 AFAQEWEVDM 80
+ Q E +M
Sbjct: 185 GYVQNGESEM 194
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ ++ G L V++G + + SS++S KCG + Y+ F ++ ++++S
Sbjct: 223 ACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKDLLS 282
Query: 65 WTAIIAAFAQEWEVDMCYTF 84
WT++I +A+ + C F
Sbjct: 283 WTSMIRVYARFGMMSDCVRF 302
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + GF N+ +G++L+ KCG+ ++F+ M ++V
Sbjct: 522 LSACSHLAFLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDV 581
Query: 63 VSWTAIIAAFA 73
+ W A+I+ +
Sbjct: 582 ICWNAMISGYG 592
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG I G C ++ + V +SLI GKC + +++F + R+V
Sbjct: 422 IASCGQLGEINLGRSIHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFNRSE-RDV 480
Query: 63 VSWTAIIAA 71
+ W A+I+A
Sbjct: 481 ILWNALISA 489
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S I GTQ + V+ GF N++V +SL+ KCG+ Y++F M +NV
Sbjct: 265 LSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNV 324
Query: 63 VSWTAIIAAF---AQEWE 77
V W A+IA+F A WE
Sbjct: 325 VLWNAMIASFSRHAHSWE 342
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R++ G LA+ G V + + LI+ KCG+N ++F+ M VR+++SW
Sbjct: 66 CAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISW 125
Query: 66 TAIIAAFAQEWE 77
+IA + E
Sbjct: 126 NTMIAGYTHNRE 137
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + I Q +A++ ++ +VG++ + KC D +FE MP + V+
Sbjct: 166 ACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVT 225
Query: 65 WTAIIAAFAQ 74
W+++ A F Q
Sbjct: 226 WSSLFAGFVQ 235
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV CG+ ++R G Q +R GF NV++ SSLI KCGE + +F++M
Sbjct: 279 IPV--CGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSP 336
Query: 61 NVVSWTAIIAAFA 73
+VVSWTA+I +A
Sbjct: 337 DVVSWTAMIMGYA 349
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+++ G++ AVR+GF +V+VGSSLI C K+F+ +PVR+ + W +++A
Sbjct: 186 DVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLA 245
Query: 71 AFAQEWEVD 79
AQ V+
Sbjct: 246 GCAQNGSVE 254
>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 628
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC + ++ G Q ++ GF +NVY+ S+L+ GKCG ++F++MP RNV
Sbjct: 86 VSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRLFDEMPHRNV 145
Query: 63 VSWTAIIAAFAQ 74
V+W ++I+ +
Sbjct: 146 VTWNSLISGYLH 157
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+ C + + G Q L+++ GF N+ VG+ LI K G NID + MF+ MP RN
Sbjct: 187 LVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSK-GWNIDASRLMFDLMPERN 245
Query: 62 VVSWTAIIAAFAQ 74
+++WT+++A +A
Sbjct: 246 IITWTSMVAGYAH 258
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G + G Q L +++G+ +N+ V + L+S +CG D ++F M +V+SW
Sbjct: 395 GMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWN 454
Query: 67 AIIAAFA 73
++++ A
Sbjct: 455 SLLSGCA 461
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + ++ G +R+GF + ++VG+SL++ GKCG +FEKM RNV
Sbjct: 235 VDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNV 294
Query: 63 VSWTAIIAAFAQE 75
VSWT +I A+AQ+
Sbjct: 295 VSWTVMIWAYAQQ 307
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S + G AV +G V VG+++++ GKCG + +FE++P RN+
Sbjct: 134 LTACSSAGALNEGKAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNL 192
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAA AQ
Sbjct: 193 VSWNALIAANAQ 204
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G + SG N Y+ + LI KCG D ++FE +P NV SW
Sbjct: 36 CTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSW 95
Query: 66 TAIIAAFAQE 75
TA+I A+A+E
Sbjct: 96 TALITAYAKE 105
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S ++ G Q + + + +++I+ GKCG + F KMP R+VVS
Sbjct: 438 ACSSLNDLTRGRQLHARILLEN-IHEANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVS 496
Query: 65 WTAIIAAFAQ 74
W +IA +AQ
Sbjct: 497 WNTMIATYAQ 506
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NV 62
SC ++ Q V SGF ++ + L++ GKCG + +FE + R N
Sbjct: 335 SCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNA 394
Query: 63 VSWTAIIAAFAQEWE 77
V+W A+I+ AQ E
Sbjct: 395 VTWNAMISGLAQHGE 409
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P + G T + T CL G V ++L++ +CG D +F + R
Sbjct: 542 VPSLALGKTIHSIVATAAPCLEQDPG------VATALVTMYARCGSLHDAKSVFWRSHSR 595
Query: 61 NVVSWTAIIAAFAQ 74
N+V+W+ +IAA AQ
Sbjct: 596 NLVTWSNLIAACAQ 609
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 11 NIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
++R G + +G V +V++GSSL+ GKCG D K+F++MP RNVV+WTA+I
Sbjct: 219 DVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALI 278
Query: 70 AAFAQ 74
A + Q
Sbjct: 279 AGYVQ 283
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + C +++ N VG++LI F KCG + +FE++ +NV
Sbjct: 313 LSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNV 372
Query: 63 VSWTAIIAAFA 73
+WTA+I FA
Sbjct: 373 YTWTAMINGFA 383
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q+ ++ GF ++++V +SLIS CG ++F+ ++VVSWTA+I F +
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVR 181
>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
V+S F +++YV ++++ KCG+ D Y +F+KMPVRN+ SW A+I F+Q +D +
Sbjct: 79 VKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVF 138
Query: 83 TFIV 86
+
Sbjct: 139 NLFM 142
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CG T + G A +V V ++LI KCG D ++F +P R V
Sbjct: 364 ISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTV 423
Query: 63 VSWTAIIAAFA 73
VSWTA+IAA A
Sbjct: 424 VSWTAMIAACA 434
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
G +++ + ++LIS +CG+ +F+ M +R VSWTA+I+ +++ VD
Sbjct: 286 GCDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVD 339
>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 776
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S R G Q QCLAV+SGF +G+S I C + G+ + F++M R+V
Sbjct: 424 MNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDV 483
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I++ A
Sbjct: 484 VSWSAVISSHAH 495
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ F +VY+GS+LI G D Y+ F +P ++VV WT++I+ Q
Sbjct: 335 GKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQ 394
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ G + L V+ GF +V+V +SL+ KCG D +K+F+ +P +NV
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV 178
Query: 63 VSWTAIIAAF 72
VSWTAII+ +
Sbjct: 179 VSWTAIISGY 188
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G + G V NV+VG+SL+ KCG +F+ MP +++
Sbjct: 220 LSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 279
Query: 63 VSWTAIIAAFA 73
VSW A+I +A
Sbjct: 280 VSWGAMIQGYA 290
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G L R+ F+ N +G++LI KCG +++F+ M ++
Sbjct: 321 LSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDR 380
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
V W AII+ A V + +
Sbjct: 381 VVWNAIISGLAMNGYVKISF 400
>gi|414878625|tpg|DAA55756.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 465
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S R G Q QCLAV+SGF +G+S I C + G+ + F++M R+V
Sbjct: 113 MNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDV 172
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I++ A
Sbjct: 173 VSWSAVISSHAH 184
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ F +VY+GS+LI G D Y+ F +P ++VV WT++I+ Q
Sbjct: 24 GKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQ 83
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG + I G Q V SG + ++ VG++LI +C E +++FE M VRN
Sbjct: 130 LSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNT 189
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
VSWT++I+ F + +VD T
Sbjct: 190 VSWTSVISGFLRLGQVDQARTL 211
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT+C + G + R G + +VG++L+ KCG +F++M +R+
Sbjct: 262 VTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDK 321
Query: 63 VSWTAIIAAFA 73
+WTA+I A
Sbjct: 322 FTWTAVILGLA 332
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 17 QYQCL---AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
Q CL VRSGF +NV+VG+SLI KCG D K+F+ M VR+VV W+++IAA+
Sbjct: 426 QALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYG 485
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +RN+ G + +AV GF + V ++LI KC + +F+++P ++V
Sbjct: 314 LQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDV 373
Query: 63 VSWTAIIAAFAQ 74
VSW A+++ +AQ
Sbjct: 374 VSWVALLSGYAQ 385
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C N++ G+ L +R F ++ + +SL++ K G +F KMP ++V
Sbjct: 213 VSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDV 272
Query: 63 VSWTAIIAAFA 73
+SW+ +IA +A
Sbjct: 273 ISWSTMIACYA 283
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +++ G V G +++V ++L+ KCG+ +F+KM VR++
Sbjct: 825 LKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDL 884
Query: 63 VSWTAIIAAFAQ 74
VSWT++I+ +A
Sbjct: 885 VSWTSMISGYAH 896
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRNVV 63
+CG+ +R G + +++GF ++ V ++++ KCG ++D+ + +F++ +++V
Sbjct: 928 ACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCG-SLDLARCLFDETAGKDLV 986
Query: 64 SWTAIIAAFA 73
W+A+IA++
Sbjct: 987 CWSAMIASYG 996
Score = 38.5 bits (88), Expect = 0.54, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+ + +C R + G A ++ + ++++VGS+L+ KCG+ + K+FE+
Sbjct: 108 IALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQR 167
Query: 60 RNVVSWTAIIAAFAQ 74
+ V WT+++ + Q
Sbjct: 168 PDTVLWTSMVTGYQQ 182
>gi|356515100|ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g58590-like [Glycine max]
Length = 732
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S RN G +RSGF ++V VG++L+ F KC + I +K F+++ +NV
Sbjct: 323 IHSCTSLRNSVCGESVHAKIIRSGFESDVIVGTALVDFYSKCDKFISAHKCFDQIEEKNV 382
Query: 63 VSWTAIIAAFA 73
VSW A+I ++
Sbjct: 383 VSWNALITGYS 393
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S ++ G Q L V+ GF + +SLIS +C V ++FE++PV NVVSW
Sbjct: 227 SEEDLEYGEQIHGLMVKCGFGCEITAANSLISVYVRCKAMFAVERLFEQVPVENVVSWNT 286
Query: 68 IIAAFAQ 74
+I A +
Sbjct: 287 VIDALVK 293
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 15 GTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q Q L++R+G + A+ +VG++L+ G+ G +++ FE MP +++V+W ++++ A
Sbjct: 131 GVQLQALSIRNGLLDADAFVGTALLGLFGRLGCWDELFLAFEDMPQKSLVTWNSMVSLLA 190
Query: 74 QEWEVDMC 81
+ V+ C
Sbjct: 191 RNGFVEEC 198
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+ ++G+ LI GKCG K+FE++ +N+++WTA+I A
Sbjct: 580 DTFLGNVLIDMYGKCGSIDSSVKVFEEIMYKNIITWTALITALG 623
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV--ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+C + R++ L++ G + ++++ +++IS GE ++ K+F+ +P R V
Sbjct: 20 ACCTLRSLDATKCLHALSITMGHIPKQSIFIHNNIISSYIALGEVLNARKLFDALPHRTV 79
Query: 63 VSWTAIIAAFAQEWEVDMCYTFI 85
VS+ +I A+ + VD + +
Sbjct: 80 VSYNTLITAYCRRGNVDDAWNLL 102
>gi|294462449|gb|ADE76772.1| unknown [Picea sitchensis]
Length = 232
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G ++SGF ++V+VGS+LI KC D K+F+ M RNV
Sbjct: 37 LPACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNV 96
Query: 63 VSWTAIIAAFA 73
VSW A+IAA+A
Sbjct: 97 VSWNAMIAAYA 107
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + V G N Y+GS+LIS KCGE ++F+ M R+V++
Sbjct: 233 ACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVIT 292
Query: 65 WTAIIAAFAQEWEVD 79
W A+I+ +AQ D
Sbjct: 293 WNAVISGYAQNGMAD 307
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q A + GF +++V ++LI K G + ++F+ MP +N
Sbjct: 332 LSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNE 391
Query: 63 VSWTAIIAAFA 73
SW A+I+A A
Sbjct: 392 ASWNAMISALA 402
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + ++ L + ++ + SLI+ +CG K+F+++P R+ VS
Sbjct: 131 SCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVS 190
Query: 65 WTAIIAAFAQ 74
W ++IA +A+
Sbjct: 191 WNSMIAGYAK 200
>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 780
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 41/58 (70%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G + A+R G +A+V+ G++L++F CG+ D ++F++MP R+VVSW ++++AF
Sbjct: 138 GLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAF 195
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G + C+ VR + ++ +SL+ K G + K+F K+ ++V
Sbjct: 529 LSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDV 588
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
SW +I + ++D+ +
Sbjct: 589 ASWNTMILGYGMHGQIDIAF 608
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + +++ +++V +SL+ K G +FE+M RNVVSW A+IA Q
Sbjct: 340 GREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQ 399
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +CG+ + + G LAV+ G V + ++L+ GK G+ ++F+ M +N
Sbjct: 227 VPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNE 286
Query: 63 VSWTAIIAAF 72
VSW + I F
Sbjct: 287 VSWNSAIGCF 296
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G Q ++R G + ++++ ++LI KCG+ +FE+ ++ VS
Sbjct: 431 ACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE-KDDVS 489
Query: 65 WTAIIAAFAQ 74
+ +I ++Q
Sbjct: 490 YNTLILGYSQ 499
>gi|302822438|ref|XP_002992877.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
gi|300139325|gb|EFJ06068.1| hypothetical protein SELMODRAFT_136113 [Selaginella moellendorffii]
Length = 630
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+G ++ LA R GF NV + ++L++ GKCG ++ K+F+ M RNV+SWT++IAA+
Sbjct: 275 KGRKVHRHLASR-GFDTNVVIQNALVTMYGKCGSLVEAQKVFDSMTARNVISWTSMIAAY 333
Query: 73 AQ 74
AQ
Sbjct: 334 AQ 335
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + + G Q + GF ++ + ++L+ GKCG D ++FE M ++++
Sbjct: 61 VAACTKLQALEEGRQLHEHLIIMGFRTDIPLETALLQMYGKCGSLDDAKRVFEGMEIKDL 120
Query: 63 VSWTAIIAAFAQ 74
+W++II+ +A
Sbjct: 121 FTWSSIISVYAH 132
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V C S + G + S + + + SL++ KC E ++ K+FE M RNV
Sbjct: 162 VGGCASVAGLADGRAIHQRILVSKVLQDDVLQDSLLNMYLKCDEMVESRKVFEGMKARNV 221
Query: 63 VSWTAIIAAFAQEWE 77
S+TA+I+A+ Q E
Sbjct: 222 RSYTAMISAYVQAGE 236
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +R G Q L V+ G+ +++V +SL+ F +CGE K+F++M RNV
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200
Query: 63 VSWTAIIAAFAQ 74
VSWT++I +A+
Sbjct: 201 VSWTSMICGYAR 212
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC RNI G +R+GF + + ++LI KC +++F++M + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
V+W +I+A + + EVD +
Sbjct: 404 VTWNSIVAGYVENGEVDAAW 423
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q V+SG +++ V +SL++ KCG +D + F+ MP R+V
Sbjct: 149 LSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDV 208
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I +AQ
Sbjct: 209 ISWTALIVGYAQ 220
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S S + ++ CL +++GF A V ++LI K G+ +F KM ++V
Sbjct: 48 LNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDV 107
Query: 63 VSWTAIIAAFAQ 74
VSWT+++ ++
Sbjct: 108 VSWTSLVTGYSH 119
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q ++ GF ++++V +SL++F GKC E K+FE+MPVRN+
Sbjct: 99 LKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNL 158
Query: 63 VSWTAIIAAFAQEWEVD 79
V+WTA+I+ A+ VD
Sbjct: 159 VAWTAMISGHARVGAVD 175
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q CLA++ GF +V GS+L+ KC + +++F +MP RN+
Sbjct: 145 LKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNL 204
Query: 63 VSWTAIIAAFAQ 74
V W+A+IA + Q
Sbjct: 205 VCWSAVIAGYVQ 216
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G Q LAV+ G N+ V ++++ GKCG ++ +F+ M R+
Sbjct: 347 LTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDA 406
Query: 63 VSWTAIIAAFAQEWEV 78
VSW AIIAA Q E+
Sbjct: 407 VSWNAIIAAHEQNEEI 422
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + I G Q ++ ++VY+ S+L+ KCG D MFEK P R+ V+W
Sbjct: 552 CANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTW 611
Query: 66 TAIIAAFA 73
+A+I A+A
Sbjct: 612 SAMICAYA 619
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + + G + V+SG + +VGS+L+ GKCG ++ K+ +++ +
Sbjct: 448 VKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTT 507
Query: 63 VSWTAIIAAFAQE 75
VSW +II+ F+ +
Sbjct: 508 VSWNSIISGFSSQ 520
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + + G Q + + FV +YV + L+ F K +K+F++MP R+V+SW
Sbjct: 16 CSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISW 75
Query: 66 TAIIAAFAQ 74
+I +A+
Sbjct: 76 NTMIFGYAE 84
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + GTQ A++S F + +G++ + KC D +K+F +P S
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQS 307
Query: 65 WTAIIAAFAQE 75
+ AII +A++
Sbjct: 308 YNAIIVGYARQ 318
>gi|302787188|ref|XP_002975364.1| hypothetical protein SELMODRAFT_52147 [Selaginella moellendorffii]
gi|300156938|gb|EFJ23565.1| hypothetical protein SELMODRAFT_52147 [Selaginella moellendorffii]
Length = 542
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T G+ R + G +A F + + G++LIS GKCG D +F+ M RNV
Sbjct: 60 LTCLGALRMLEQGRVVDGIAREMSFSSRITAGNALISMYGKCGSIPDAKNVFDSMQERNV 119
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W A+IAA+AQ +D
Sbjct: 120 VTWNALIAAYAQNGSID 136
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G + + G + + ++L++ G+C ++FEK+ +++VSW
Sbjct: 195 CAMLEDLVEGKKAHRHVLEKGLSKDRMIRNALVNMYGRCSRVEKARQVFEKIEEKDIVSW 254
Query: 66 TAIIAAFAQEWEVDMC 81
A+ +A A+ D C
Sbjct: 255 NALASAAARHQLHDEC 270
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G++ A R G +NVYVG++L+ KCG+ ++F KMP +NV
Sbjct: 362 LSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNV 421
Query: 63 VSWTAIIAAFA 73
SW A+I A
Sbjct: 422 ASWNALICGLA 432
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VGS+L+ KCGE + ++F+ + +++V+W A+I +AQ
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G++ A R G +NVYVG++L+ KCG+ ++F KMP +NV
Sbjct: 362 LSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNV 421
Query: 63 VSWTAIIAAFA 73
SW A+I A
Sbjct: 422 ASWNALICGLA 432
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VGS+L+ KCGE + ++F+ + +++V+W A+I +AQ
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G + V+ GF ++V+VG++L+SF G CG D ++F++MP +++
Sbjct: 48 LKACADAFEVRKGREVHGXVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDL 107
Query: 63 VSWTAIIAAFA 73
VSW +I F+
Sbjct: 108 VSWNTMIGVFS 118
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+ G + ++R G +++++ +SLI K G + + +F K+ +NVVSW A+IA F
Sbjct: 261 KAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANF 320
Query: 73 AQ 74
AQ
Sbjct: 321 AQ 322
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C + ++ V+ G V VG++L+ GKCG + ++F +M +
Sbjct: 150 LPV--CAGVEDEVTASEIHGYVVKVGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMVEK 207
Query: 61 NVVSWTAIIAAFA 73
N+VSW AII +F
Sbjct: 208 NLVSWNAIITSFG 220
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + I+ G + +R F +++V +SL+ F KCG +F++M ++V
Sbjct: 452 LSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDV 511
Query: 63 VSWTAIIAAFAQEWEVD 79
SW +I + E+D
Sbjct: 512 ASWNTMILGYGMLGELD 528
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + L + F +V VG+ LIS KCG D +++F K+P +NV
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNV 681
Query: 63 VSWTAIIAAFAQ 74
SWT++I +AQ
Sbjct: 682 YSWTSMITGYAQ 693
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C RN+ G + L +++G+ +++VG++LI+ KCG+ D K+F+ +P R++
Sbjct: 218 LNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDL 277
Query: 63 VSWTAIIAAFAQ 74
V+WT++I A+
Sbjct: 278 VTWTSMITGLAR 289
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + G+ +YVG++++S KCG D ++F+ + RNVVS
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380
Query: 65 WTAIIAAFAQEWEVDMCYTF 84
WTA+IA FAQ +D + F
Sbjct: 381 WTAMIAGFAQHGRIDEAFLF 400
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S ++ G Q Q + +G+ ++ V ++L+S KCG D +++FEK+ +NVV+
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481
Query: 65 WTAIIAAFAQEWEVD 79
W A+I A+ Q + D
Sbjct: 482 WNAMITAYVQHEQYD 496
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S+ ++ G L +++G ++++V ++L+S CG+ + +F MP R++VSW
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583
Query: 66 TAIIAAFAQEWEVDMCYTF 84
IIA F Q + + + +
Sbjct: 584 NTIIAGFVQHGKNQVAFDY 602
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +N+ G + +SG ++++ ++LI+ KCG I ++F+ M ++V SW
Sbjct: 120 CIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSW 179
Query: 66 TAIIAAFAQ 74
++ + Q
Sbjct: 180 NLLLGGYVQ 188
>gi|78499702|gb|ABB45856.1| hypothetical protein [Eutrema halophilum]
Length = 527
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C ++ G Q C+A+R+GFV++ + + L+ GKCG+ + MF MP ++V
Sbjct: 283 LAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQACTMFSAMPSKSV 342
Query: 63 VSWTAIIAAFA 73
VSWT++I A+A
Sbjct: 343 VSWTSMIGAYA 353
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q L ++ G ++LI K G +D +FE + ++VVS
Sbjct: 88 ACALLSSPKTGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVTVFESVEDKDVVS 147
Query: 65 WTAIIAAFAQ 74
W ++++ F +
Sbjct: 148 WNSLLSGFLR 157
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G++ A R G +NVYVG++L+ KCG+ ++F KMP +NV
Sbjct: 362 LSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNV 421
Query: 63 VSWTAIIAAFA 73
SW A+I A
Sbjct: 422 ASWNALICGLA 432
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VGS+L+ KCGE + ++F+ + +++V+W A+I +AQ
Sbjct: 291 VGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +R G Q L V+ G+ +++V +SL+ F +CGE K+F++M RNV
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200
Query: 63 VSWTAIIAAFAQ 74
VSWT++I +A+
Sbjct: 201 VSWTSMICGYAR 212
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC RNI G +R+GF + + ++LI KC +++F++M + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W +I+A + + EVD
Sbjct: 404 VTWNSIVAGYVENGEVD 420
>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 692
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+ S+ GG Q LA+++ +V+VGSSLI+ K G +D K+F+ +P RN V
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180
Query: 64 SWTAIIAAFAQE------WEV 78
SW II+ +A E WE+
Sbjct: 181 SWATIISGYAMERMAFEAWEL 201
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q CLA+++G ++ VG++L++ GKCG D +K FE ++ ++W+A+I +AQ
Sbjct: 233 GKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQ 292
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G Q ++ GF V +GS+L + KCG D +F +MP R++++
Sbjct: 407 ACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMT 466
Query: 65 WTAIIAAFAQEWE 77
W A+I+ +Q E
Sbjct: 467 WNAMISGLSQNGE 479
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++++ G +R+G ++VY+ +SL++ KCG + +FE + ++VVSW
Sbjct: 20 CTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSW 79
Query: 66 TAIIAAFAQEWEVDMCYTFIV 86
+I ++Q+ V Y+F++
Sbjct: 80 NCLINGYSQKGTVG--YSFVM 98
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G + V+ GF ++V+VG++L+SF G CG D ++F++MP +++
Sbjct: 48 LKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDL 107
Query: 63 VSWTAIIAAFA 73
VSW +I F+
Sbjct: 108 VSWNTMIGVFS 118
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+ G + ++R G +++++ +SLI K G + + +F K+ +NVVSW A+IA F
Sbjct: 160 KAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANF 219
Query: 73 AQ 74
AQ
Sbjct: 220 AQ 221
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + I+ G + +R F +++V +SL+ F KCG +F++M ++V
Sbjct: 351 LSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDV 410
Query: 63 VSWTAIIAAFAQEWEVD 79
SW +I + E+D
Sbjct: 411 ASWNTMILGYGMLGELD 427
>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Brachypodium distachyon]
Length = 595
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
LA ++ F +V+VGS+++ KCG +D ++F++MP RNVVSW+A+I +A
Sbjct: 148 LASKTPFAEDVFVGSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGYA 200
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V C + G Q ++++ A+ +VGSSL+S KCG Y++F P RN+
Sbjct: 231 VRVCATATLFDLGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDRAYRIFSAAPERNL 290
Query: 63 VSWTAIIAAFAQ 74
W A++ A AQ
Sbjct: 291 GIWNAVLNASAQ 302
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R R G Q +A + G ANV+VG++L++ K G +F+ +P RN V+
Sbjct: 146 ACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVT 205
Query: 65 WTAIIAAFAQ 74
WTA+I ++Q
Sbjct: 206 WTAVITGYSQ 215
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C + GG Q A R+ ++ V ++LI KC + ++F+ M RN+V
Sbjct: 246 SACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLV 305
Query: 64 SWTAIIAAFAQ 74
SWT +IA + Q
Sbjct: 306 SWTTMIAGYMQ 316
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
AV SG + ++++ + L+ K G D ++F+ MP RN+VSW + I+ +AQ D
Sbjct: 56 AVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRED 113
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCGS I G Q +++ ++ YV ++LI KC + +FE + +
Sbjct: 346 LNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDA 405
Query: 63 VSWTAIIAAFAQ 74
+S+ A+I +A+
Sbjct: 406 ISYNAMIEGYAR 417
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT + +I G Q+ +++G ++ ++ ++LI KCG + +FE ++V
Sbjct: 548 VTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDV 607
Query: 63 VSWTAIIAAFAQ 74
+ W ++I+ +AQ
Sbjct: 608 ICWNSMISTYAQ 619
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S ++ Q L V+SG ++Y GS+LI K D +F M R++V W A
Sbjct: 452 SRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNA 511
Query: 68 IIAAFAQ 74
+I AQ
Sbjct: 512 MIFGLAQ 518
>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
Length = 592
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
LA ++ F +V+VGS+++ KCG D ++F++MP RNVVSW+A+I +A
Sbjct: 145 LAAKTPFAGDVFVGSAILDMYAKCGHLADARRLFDEMPERNVVSWSALICGYA 197
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q A ++ A+ +VGSSL+S KCG Y++F + P +N+ W
Sbjct: 231 CAAATLFELGAQVHARATKTALDASPFVGSSLVSVYSKCGLVECAYRVFNEAPEKNLGIW 290
Query: 66 TAIIAAFAQ 74
A++ A AQ
Sbjct: 291 NAVLIASAQ 299
>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 700
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG R++ G Q ++ G +V+VGS L+ GKCG+ + K+F+ + RNVV W
Sbjct: 237 CGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVW 296
Query: 66 TAIIAAFAQEWEVD 79
T+++ A+ Q E +
Sbjct: 297 TSLMTAYLQNGEFE 310
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+R G + G V VG++LI+ KCG Y +F M R++++W A+I
Sbjct: 344 LRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICG 403
Query: 72 FAQ 74
++Q
Sbjct: 404 YSQ 406
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS + G Q + A N+YV + L+ GKCG + ++FE MPV+N
Sbjct: 341 LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE 400
Query: 63 VSWTAIIAAFAQE 75
+W A+I A+A +
Sbjct: 401 ATWNAMITAYAHQ 413
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++R G + +A+ + ++GS LIS GKCG+ ++F +M ++ V+
Sbjct: 242 ACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA 301
Query: 65 WTAIIAAFAQ 74
WTA+I ++Q
Sbjct: 302 WTAMITVYSQ 311
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C I G + G +V++ SLI KCG+ K+F+++ R+ VS
Sbjct: 141 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 200
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 201 WNSMISGYSE 210
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS + G Q + A N+YV + L+ GKCG + ++FE MPV+N
Sbjct: 337 LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE 396
Query: 63 VSWTAIIAAFAQE 75
+W A+I A+A +
Sbjct: 397 ATWNAMITAYAHQ 409
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++R G + +A+ + ++GS LIS GKCG+ ++F +M ++ V+
Sbjct: 238 ACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA 297
Query: 65 WTAIIAAFAQ 74
WTA+I ++Q
Sbjct: 298 WTAMITVYSQ 307
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C I G + G +V++ SLI KCG+ K+F+++ R+ VS
Sbjct: 137 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 196
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 197 WNSMISGYSE 206
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R + G Q +AVR G NVYVG++LI+ K G +F+ +PV+N V+
Sbjct: 123 ACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVT 182
Query: 65 WTAIIAAFAQ 74
WTA+I ++Q
Sbjct: 183 WTAVITGYSQ 192
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + + GG Q A R + V ++LI KC K+F+ M RN+
Sbjct: 222 VSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNL 281
Query: 63 VSWTAIIAAFAQ 74
VSWT +IA + Q
Sbjct: 282 VSWTTMIAGYMQ 293
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCGS I G Q A+++ ++ YV +SLI KC + +FE + +
Sbjct: 323 LNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDA 382
Query: 63 VSWTAIIAAFAQ 74
+S+ A+I +++
Sbjct: 383 ISYNAMIEGYSR 394
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
AV +G + ++++ + L+ K G D ++F++MP +N+VSW + I+ AQ
Sbjct: 37 AVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQ 89
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 41/77 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT + ++ G Q+ +++G ++ +V ++LI KCG + +FE ++V
Sbjct: 525 VTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDV 584
Query: 63 VSWTAIIAAFAQEWEVD 79
+ W ++I+ +AQ + +
Sbjct: 585 ICWNSMISTYAQHGQAE 601
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 31/67 (46%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S I Q L V+SG ++Y GSSLI K D +F M R++V W A
Sbjct: 429 SQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNA 488
Query: 68 IIAAFAQ 74
+I AQ
Sbjct: 489 MIFGLAQ 495
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 17 QYQCL---AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
Q CL VRSGF +NV+VG+SLI KCG D K+F+ M VR+VV W+++IAA+
Sbjct: 356 QALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYG 415
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRNVV 63
+CG+ +R G + +++GF ++ V ++++ KCG ++D+ + +F++ +++V
Sbjct: 593 ACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCG-SLDLARCLFDETAGKDLV 651
Query: 64 SWTAIIAAFA 73
W+A+IA++
Sbjct: 652 CWSAMIASYG 661
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+ + +C R + G A ++ + ++++VGS+L+ KCG+ + K+FE+
Sbjct: 108 IALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQR 167
Query: 60 RNVVSWTAIIAAFAQ 74
+ V WT+++ + Q
Sbjct: 168 PDTVLWTSMVTGYQQ 182
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+ S+ GG Q LA+++ +V+VGSSLI+ K G +D K+F+ +P RN V
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180
Query: 64 SWTAIIAAFAQE------WEV 78
SW II+ +A E WE+
Sbjct: 181 SWATIISGYAMERMAFEAWEL 201
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G Q ++ GF V +GS+L + KCG D +F +MP R++++
Sbjct: 425 ACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMT 484
Query: 65 WTAIIAAFAQEWE 77
W A+I+ +Q E
Sbjct: 485 WNAMISGLSQNGE 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q CLA+++G ++ VG++L++ GKCG D K FE ++ ++W+A+I +AQ
Sbjct: 233 GKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQ 292
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++++ G +R+G ++VY+ +SL++ KCG + +FE + ++VVSW
Sbjct: 20 CTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSW 79
Query: 66 TAIIAAFAQEWEVDMCYTFIV 86
+I ++Q+ V Y+F++
Sbjct: 80 NCLINGYSQKGTVG--YSFVM 98
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q ++++G+ +Y ++L+ KCG +D K F+ + ++
Sbjct: 322 INACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDI 381
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
V WT++I+ +AQ E + T
Sbjct: 382 VLWTSMISGYAQNGENETALTL 403
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++ + ++ G Q +AV++G +VYVGSSL++ K G D K+F++MP RN V
Sbjct: 126 SAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTV 185
Query: 64 SWTAIIAAFA 73
SW +I+ +A
Sbjct: 186 SWATMISGYA 195
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G Q ++ GF V +GS+L + KCG D Y +F +MP R+V+S
Sbjct: 430 ACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVIS 489
Query: 65 WTAIIAAFAQ 74
W A+I+ +Q
Sbjct: 490 WNAMISGLSQ 499
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LA+++G +A V V ++L++ KCG D + FE +N ++W+A++ +AQ
Sbjct: 238 GRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQ 297
Query: 75 EWEVD 79
+ D
Sbjct: 298 GGDSD 302
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q A + GF +YV S+++ KCG D K FE + +V
Sbjct: 327 INACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDV 386
Query: 63 VSWTAIIAAFAQ 74
V WT+II + Q
Sbjct: 387 VLWTSIITGYVQ 398
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC ++ G + V+SGF +N+YVG+S+I+ C D K+F +M R+V
Sbjct: 185 ITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDV 244
Query: 63 VSWTAIIAAFAQEWEVD 79
SWT+++ +A+ E+D
Sbjct: 245 FSWTSLLGGYAKHGEMD 261
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C S R IR G + +++ ++ +VY+ + LI KC D MF++MP RNV
Sbjct: 69 LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNV 128
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+A++Q
Sbjct: 129 VSWTAMISAYSQ 140
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC + G Q +A++ + ++++VGSSL+ K G D + +F +P R+V
Sbjct: 170 LTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDV 229
Query: 63 VSWTAIIAAFAQ 74
V+ TAII+ +AQ
Sbjct: 230 VACTAIISGYAQ 241
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RSG + V + +SLI KCG ++F+ MP R +SW A++ +++
Sbjct: 283 GKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSK 342
>gi|413950787|gb|AFW83436.1| hypothetical protein ZEAMMB73_311793 [Zea mays]
Length = 594
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
LA ++ F +V+VGS+++ KCG D ++F+ MP RNVVSW+A+I +A
Sbjct: 147 LAAKTPFAGDVFVGSAIVDMYAKCGHLADARRLFDDMPERNVVSWSALICGYA 199
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G LA+++ N++VGS+L+ GKCG ++F +MP RN+
Sbjct: 319 LSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNL 378
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
V+W A+I +A +VDM +
Sbjct: 379 VTWNAMIGGYAHLGDVDMALSL 400
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R 60
+ +C ++ G Q VRS + +V V + LI F GKCG+ + +F ++ R
Sbjct: 217 LNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRR 276
Query: 61 NVVSWTAIIAAFAQEWEVD-MCYTFI 85
NVVSW +++AA Q E + C F+
Sbjct: 277 NVVSWCSLLAALVQNHEEERACMVFL 302
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
MPVT G Q LA++ G + +V+VG S K G + MF++MP R
Sbjct: 124 MPVT----------GKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHR 173
Query: 61 NVVSWTAIIAAFAQE 75
N+ +W A ++ Q+
Sbjct: 174 NLATWNAYMSNAVQD 188
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q VR G NV+VG+ LIS GKCG ++ ++ ++MP R+VVSW +++A A+
Sbjct: 1145 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCAR 1204
Query: 75 EWEVD 79
+ D
Sbjct: 1205 NGQFD 1209
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G + VR N+ + ++LI KCG ++F++M R+VVS
Sbjct: 1304 ACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS 1363
Query: 65 WTAIIAAFA 73
WT++I+A+
Sbjct: 1364 WTSMISAYG 1372
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T ++ G+ L V +GF N Y+GSSL+S KCG + ++F +MP RNV
Sbjct: 115 LVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNV 174
Query: 63 VSWTAIIAAFAQ 74
V WT++IA Q
Sbjct: 175 VCWTSMIAGCTQ 186
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SCG + G G + V +SLI KCG+ Y++F + R+V
Sbjct: 216 VSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDV 275
Query: 63 VSWTAIIAAFA 73
+WT +I FA
Sbjct: 276 FTWTVMIMGFA 286
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G +A + V++V+VG++LI+ GKCG + K+FE MP RN+
Sbjct: 108 IKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNL 167
Query: 63 VSWTAIIAAFAQ 74
VSW +II F++
Sbjct: 168 VSWNSIICGFSE 179
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C +I G LAV+ G + V +SLI KC + +F+K +
Sbjct: 211 LPV--CAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKK 268
Query: 61 NVVSWTAIIAAFAQEWEVDMCYTF 84
N+VSW ++I +A+ E D+C TF
Sbjct: 269 NIVSWNSMIGGYAR--EEDVCRTF 290
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G + A+R+G + ++G SL+S CG+ +F+ M R++VS
Sbjct: 417 ACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS 476
Query: 65 WTAIIAAFAQ 74
W +IA ++Q
Sbjct: 477 WNVMIAGYSQ 486
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + C A+++ +++V SS+I K G ++F+++ ++V S
Sbjct: 518 ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS 577
Query: 65 WTAIIAAFA 73
W IIA +
Sbjct: 578 WNVIIAGYG 586
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQ-YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +CG ++I G + ++ ++ + F + + + +I+ CG D +F+K+ +N
Sbjct: 5 LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64
Query: 62 VVSWTAIIAAFAQ 74
+ W AI++A+ +
Sbjct: 65 LFQWNAIVSAYTR 77
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
R G +N V ++ I+ +CG ++F+ M + V SW A++ +AQ
Sbjct: 335 RHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQ 385
>gi|255552163|ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543761|gb|EEF45289.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 463
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + LAV++ +++VGS+L+ GKCG D + F +M RN+
Sbjct: 317 ISACAGLAGLELGRSFHALAVKACLEGDIFVGSALVDMYGKCGGIEDSEQAFHEMSERNL 376
Query: 63 VSWTAIIAAFAQEWEVDM 80
V+W A+I +A + +M
Sbjct: 377 VTWNALIGGYAHQGHAEM 394
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + G Q +RSGF +V V + LI F GKC E +F KM RN V
Sbjct: 217 NACADQLYVDLGRQLHGFVIRSGFEKSVSVLNGLIDFYGKCKEVRLAEMVFGKMENRNAV 276
Query: 64 SWTAIIAAFAQEWEVDMCYTFIV 86
SW +++AA Q E + F V
Sbjct: 277 SWCSMVAACEQNGEEEKACLFFV 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
G Q +AV+ G + +V+VG S K G D K+F+++P RNVV+W A I+
Sbjct: 127 GKQIHAIAVKFGQINDVFVGCSAFDMYSKTGLKQDAQKLFDELPERNVVTWNAYIS 182
>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
Length = 610
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C R +R G Q V +G+ +Y+ + L+ +CG D + + + MP RNV
Sbjct: 42 ITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNV 101
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 102 VSWTAMISGYSQ 113
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 3 VTSCGSTRNIRGG--TQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPV 59
+TSC ++ I Q A++ F +++VGSSL+ + ENI + ++F+ +P
Sbjct: 143 LTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYAR-SENIQEARRVFDMLPA 201
Query: 60 RNVVSWTAIIAAFAQ 74
R+VVS+T I++ + +
Sbjct: 202 RDVVSYTTILSGYTR 216
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L +R + + +SLI KCG+ + ++F+ MP R+VVSW A++ + +
Sbjct: 258 GKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGR 317
Query: 75 E---WEVDMCYTFI 85
+EV + F+
Sbjct: 318 HGMAYEVVQLFRFM 331
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 1430
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ R G Q L +S +VY+GS+L+ KC + ++FE MP RN+
Sbjct: 899 LSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNI 958
Query: 63 VSWTAIIAAFAQ 74
VSW ++I + Q
Sbjct: 959 VSWNSLITCYEQ 970
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +CG+ +++ G Q ++ GF ++V+VG+SL+ K G D K+FE+
Sbjct: 1133 LNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 1192
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I AQ
Sbjct: 1193 MAARDNVSWNAMIVGHAQ 1210
Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C R G Q V+S F ++ + ++L+ KCG +F++M R+
Sbjct: 1000 MSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRS 1059
Query: 62 VVSWTAIIAAFAQEWEVD 79
VVS T++I +A+ V+
Sbjct: 1060 VVSETSLITGYARSANVE 1077
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
++ + +S++S CG D ++FE M RN+VSW A++ + + ++
Sbjct: 317 DMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDL 365
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG TR R + +A RS V +SLI+ + D +F +M +NV++W
Sbjct: 1042 CGRTRAAR--CVFDRMASRS-----VVSETSLITGYARSANVEDAQMVFSQMVEKNVIAW 1094
Query: 66 TAIIAAFAQEWE 77
+IAA+AQ E
Sbjct: 1095 NVLIAAYAQNGE 1106
Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C ++ G Q + F +NV +G++L+ G C D + F+ + N
Sbjct: 158 LSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNA 217
Query: 63 VSWTAIIAAF 72
+SW I+ +
Sbjct: 218 ISWNVIVRRY 227
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G C A+R GF+ +VYV S+L+ KCG D +F+ M RNVVSW A+I +A
Sbjct: 312 GRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYA 370
>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
Length = 577
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+ ++ G Q L ++ F +N +VG+ LI+ KCG+ D K+F +MP N VSW
Sbjct: 272 GADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWN 331
Query: 67 AIIAAFAQ 74
++IAAFA+
Sbjct: 332 SMIAAFAR 339
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
CLAV +GF + VG++LI+ KCG + ++F++M RNV++WTAII+ Q
Sbjct: 82 HCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQ 137
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q + G ++ V S+L+ KCG D ++FE +
Sbjct: 167 LMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDK 226
Query: 63 VSWTAIIAAFAQ 74
VS T I+A FAQ
Sbjct: 227 VSMTIILAGFAQ 238
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTF 84
K G D K+F++MP+R+ VSW +I+ F ++ D+ + F
Sbjct: 3 AKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGF 45
>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
Length = 588
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C R +R G Q V +G+ +Y+ + L+ +CG D + + MP RNV
Sbjct: 42 ITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNV 101
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSWTA+I+ ++Q D + +
Sbjct: 102 VSWTAMISGYSQNERPDQAWELFI 125
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q AV++ F +++VGSSL+ K ENI + ++F+ +P R+VVS+TAI++ + Q
Sbjct: 137 QVHAFAVKTNFELHMFVGSSLLDMYAK-SENIQEARRVFDMLPARDVVSYTAILSGYTQ 194
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L +R + + +SLI KCG+ + ++F+ MP R+VVSW A++ + +
Sbjct: 236 GKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGR 295
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++++ G+Q L RS ++++VY+GS+L+ KCG +F++M VR+
Sbjct: 158 LSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSR 217
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSW ++I + Q VD V
Sbjct: 218 VSWNSLITCYEQNGPVDEALKIFV 241
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRN 61
+ C +R+ R ++ ++S F + ++ + LI GKCG +DV K+F++M RN
Sbjct: 26 LNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCG-CVDVARKLFDRMLERN 84
Query: 62 VVSWTAIIAAFAQEWEVD 79
+ SW +II AF + +D
Sbjct: 85 IFSWNSIICAFTKSGFLD 102
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV------ANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +C + +++ G Q ++ GF ++V+VG+SLI KCG + ++F+
Sbjct: 392 LNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQH 451
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M ++ VSW A+I +AQ
Sbjct: 452 MLEKDCVSWNAMIVGYAQ 469
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
V++C + I+ G Q V+ F ++ +G++L+ KC + +F+ MP+R+
Sbjct: 259 VSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRS 318
Query: 62 VVSWTAIIAAFAQEWEV 78
VVS T++++ +A+ +V
Sbjct: 319 VVSETSMVSGYAKASKV 335
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T ++ G+ L V +GF N Y+GSSL+S KCG + ++F +MP RNV
Sbjct: 115 LVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNV 174
Query: 63 VSWTAIIAAFAQ 74
V WT++IA Q
Sbjct: 175 VCWTSMIAGCTQ 186
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SCG + G G + V +SLI KCG+ Y++F + R+V
Sbjct: 216 VSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDV 275
Query: 63 VSWTAIIAAFA 73
+WT +I FA
Sbjct: 276 FTWTVMIMGFA 286
>gi|224084768|ref|XP_002307403.1| predicted protein [Populus trichocarpa]
gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + ++ G Q V+ + +V+VG+SL+ KCGE D K+F M RN
Sbjct: 148 LKACGEEKALKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNT 207
Query: 63 VSWTAIIAAFAQE 75
V+WT+IIA +A++
Sbjct: 208 VTWTSIIAGYARK 220
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G + +++ +N Y+GS+L+ F KCGE+ K+ ++MP R+V
Sbjct: 249 LRACGLIGALLAGREVHAQIIKNCSQSNEYLGSTLVWFYCKCGESRTASKVLQQMPFRDV 308
Query: 63 VSWTAIIAAFA 73
VSWTAII+ A
Sbjct: 309 VSWTAIISGHA 319
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C + + G A ++ +NV+VGS+LI +CG + ++F+ MP RN
Sbjct: 349 ALKACANLETVLQGKLIHSSANKTPASSNVFVGSALIHMYARCGYVSEAIQVFDSMPERN 408
Query: 62 VVSWTAIIAAFAQ 74
+V+W A+I + +
Sbjct: 409 LVTWRAMIMGYVR 421
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q V+ + N+ V S+++ F +CG+ + +F++M R+VVSW
Sbjct: 51 CSRRLDFELGRQVHARVVKGNW-RNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSW 109
Query: 66 TAIIAAFAQE 75
T +I A +Q+
Sbjct: 110 TTMITACSQQ 119
>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
Length = 781
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ST +++ G + ++ GF +V+VG++LI+ KCG + F+++ R+V
Sbjct: 112 LNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDV 171
Query: 63 VSWTAIIAAFAQ 74
VSWTA+IAA Q
Sbjct: 172 VSWTAMIAACVQ 183
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G Q + + F + V ++LI+ GKCG+ + +FEKM R+++
Sbjct: 417 TCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILV 476
Query: 65 WTAIIAAFAQ 74
W +++ A+AQ
Sbjct: 477 WNSMLGAYAQ 486
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S +N+ G + GF N V LI +CG + ++FE + ++V +W
Sbjct: 14 CSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAW 73
Query: 66 TAIIAAFAQEWEVD 79
T +I + Q+ + D
Sbjct: 74 TRMIGIYCQQGDYD 87
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
L +G+ + V ++L+S G+C +K+F M ++V++WT + A+AQ
Sbjct: 332 LVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQ 385
>gi|242069791|ref|XP_002450172.1| hypothetical protein SORBIDRAFT_05g001460 [Sorghum bicolor]
gi|241936015|gb|EES09160.1| hypothetical protein SORBIDRAFT_05g001460 [Sorghum bicolor]
Length = 521
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C ++SG V ++ VGS+L+ KCG D ++F +MP RNV++WT++I + +
Sbjct: 286 GEQVHCQGMKSGLVLDIKVGSALVDMYAKCGRVEDGRRIFNQMPERNVITWTSMIDGYGK 345
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q ++ GF ++++V +SL++F GKC E K+FE+MPVRN+
Sbjct: 99 LKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNL 158
Query: 63 VSWTAIIAAFAQEWEVD 79
V+WTA+I+ A+ VD
Sbjct: 159 VAWTAMISGHARVGAVD 175
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C S R IR G + +++ ++ +VY+ + LI KC D +MF++MP +NV
Sbjct: 97 LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNV 156
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+A++Q
Sbjct: 157 VSWTAMISAYSQ 168
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC + G Q +A++ + ++++VGSSL+ K G D + +F +P R+V
Sbjct: 198 LTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDV 257
Query: 63 VSWTAIIAAFAQ 74
V+ TAII+ +AQ
Sbjct: 258 VACTAIISGYAQ 269
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RSG + V + +SLI KCG ++F+ MP R +SW A++ +++
Sbjct: 311 GKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSK 370
>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 359
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
A+R G +VYVGSSL+ F GKC E + KMF++M +NVVSWTA++ +
Sbjct: 38 AIRCGVSDDVYVGSSLVDFYGKCKEILSARKMFDEMTQKNVVSWTAMVVGY 88
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
NV + +I K G+ +FE+ P R+V++W+A+I+ +AQ
Sbjct: 139 NVVSFTVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQ 183
>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
Length = 782
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ST +++ G + ++ GF +V+VG++LI+ KCG + F+++ R+V
Sbjct: 113 LNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDV 172
Query: 63 VSWTAIIAAFAQ 74
VSWTA+IAA Q
Sbjct: 173 VSWTAMIAACVQ 184
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G Q + +GF + V ++LI+ GKCG+ + +FEKM R+++
Sbjct: 418 TCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILV 477
Query: 65 WTAIIAAFAQ 74
W +++ A+AQ
Sbjct: 478 WNSMLGAYAQ 487
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S +N+ G + GF N V LI +CG + ++FE + ++V +W
Sbjct: 15 CSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAW 74
Query: 66 TAIIAAFAQEWEVD 79
T +I + Q+ + D
Sbjct: 75 TRMIGIYCQQGDYD 88
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
L +G+ +V V ++L+S G+C +K+F M ++V++WT + A+AQ
Sbjct: 333 LVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQ 386
>gi|297740419|emb|CBI30601.3| unnamed protein product [Vitis vinifera]
Length = 501
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++R G Q + V SGF +V+V ++L+ KC E +D ++F+++P RNV
Sbjct: 154 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 213
Query: 63 VSWTAIIA 70
VSW A+ +
Sbjct: 214 VSWNALFS 221
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++ G+ + + ++L+ K G+ D +FEK+ ++VSW A+IAA+AQ
Sbjct: 237 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAAYAQ 288
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C +T+++R G Q +SG + + + LI+ KC K+ ++ ++
Sbjct: 53 LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDL 112
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I+ +AQ
Sbjct: 113 VSWSALISGYAQ 124
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + ++ G A GF +++V S+LI KCG+ D +F+++P+RNV
Sbjct: 2022 IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNV 2081
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT++I + Q + D
Sbjct: 2082 VSWTSMITGYVQNEQAD 2098
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +I G ++ GF +V+V ++LI F KCG K+FEKM VRNV
Sbjct: 132 IKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNV 191
Query: 63 VSWTAIIAAF 72
VSWT +I+
Sbjct: 192 VSWTTVISGL 201
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G ++ NV VG+S+I KCG K F++M +NV S
Sbjct: 2235 ACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKS 2294
Query: 65 WTAIIAAFA 73
WTA++A +
Sbjct: 2295 WTAMVAGYG 2303
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ G T + G V+ GF ++ VG++L+ KCG+ + K+F+ M ++
Sbjct: 2137 VSGKGITEGVHG------FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD 2190
Query: 63 VSWTAIIAAFAQ 74
+SW ++IA +AQ
Sbjct: 2191 ISWNSMIAVYAQ 2202
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
A+++ VY+G++LI KCG D ++FE MP +++ +W ++I +
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLG 334
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G T++ V NV +++IS CG+ + ++F+++P +NVVSWTA+I +
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGY 232
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CGS G Q VRSGF ANV+VGS+L+ KCG+ + +M E M V +
Sbjct: 247 LTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDP 306
Query: 63 VSWTAIIAAFAQE 75
VSW ++I ++
Sbjct: 307 VSWNSMIVGCVRQ 319
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q ++SG +++ V +SL+S KCG D K+F+ M +++V
Sbjct: 449 LSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDV 508
Query: 63 VSWTAIIAAFAQ 74
++WTA+I +AQ
Sbjct: 509 ITWTALIVGYAQ 520
Score = 37.7 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWTAIIAAFA 73
G Q A+++ F +N +V + L+ KC ++ +FE P RN V WTA++ ++
Sbjct: 157 GKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYS 216
Query: 74 Q 74
Q
Sbjct: 217 Q 217
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R L V++GF A V ++L+ K G + +FEKM ++V+SWT+++
Sbjct: 356 DMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVT 415
Query: 71 A 71
Sbjct: 416 G 416
Score = 34.7 bits (78), Expect = 8.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 37 LISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
++S KCG D K+F+ MP R+ SW +I A+A
Sbjct: 47 VLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYA 83
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CGS G Q VRSGF ANV+VGS+L+ KCG+ + +M E M V +
Sbjct: 247 LTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDP 306
Query: 63 VSWTAIIAAFAQE 75
VSW ++I ++
Sbjct: 307 VSWNSMIVGCVRQ 319
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+SL+S KCG D K+F+ M +++V++WTA+I +AQ
Sbjct: 424 NSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQ 463
Score = 37.7 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWTAIIAAFA 73
G Q A+++ F +N +V + L+ KC ++ +FE P RN V WTA++ ++
Sbjct: 157 GKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYS 216
Query: 74 Q 74
Q
Sbjct: 217 Q 217
Score = 34.7 bits (78), Expect = 8.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 37 LISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
++S KCG D K+F+ MP R+ SW +I A+A
Sbjct: 47 VLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYA 83
>gi|297745258|emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S G Q A+RSG +V+VG++++ KCG + K+FE+M V++VVS
Sbjct: 240 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 299
Query: 65 WTAIIAAFAQ 74
W A++ ++Q
Sbjct: 300 WNAMVTGYSQ 309
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + R G + SGF NV+VG+ L+S G+CG + ++F++M R V
Sbjct: 133 LKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV 192
Query: 63 ---VSWTAIIAAFAQ 74
VSW +I+AA+ Q
Sbjct: 193 GDLVSWNSIVAAYMQ 207
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G L V+ GF N++V +SL+S KCG D KM + +P N+
Sbjct: 121 IKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNI 180
Query: 63 VSWTAIIAAF 72
VSWTAII+ +
Sbjct: 181 VSWTAIISGY 190
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
NV+V +SL+ K G +F+ M R++VSW+A+I +A
Sbjct: 249 NVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYA 292
>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
Length = 770
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N +V + LI+ KCG+ D +F +MP RN VSW ++IAAFA+
Sbjct: 376 GKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFAR 435
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85
V +SL+S KCG+ +D K+F++MP+R+V+S + F + E + + +
Sbjct: 92 VWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLL 144
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA+ SG+ + VG+ LI+ KCG ++ +F+ M RNV++ TA+I+ +
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIE 233
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ I G Q L + G + + + S+L+ KCG D + +FE +
Sbjct: 263 LAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDE 322
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VS T I+ AQ + F +
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFFI 346
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G C AV SGF + YV ++L++F KCG+ ++F++MP ++V
Sbjct: 114 IKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSV 173
Query: 63 VSWTAIIAAFAQ 74
V+W ++++ F Q
Sbjct: 174 VAWNSLVSGFEQ 185
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C T I G+ V G NV +G++LI+ +CG+ ++F+KM NV
Sbjct: 215 LSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNV 274
Query: 63 VSWTAIIAAFA 73
+WTA+I+A+
Sbjct: 275 AAWTAMISAYG 285
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G + +RSGF + +YV +SL+ CG+ YK+F+KMP +++V+W ++I
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195
Query: 71 AFAQ 74
FA+
Sbjct: 196 GFAE 199
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + ++ G N++ + L+ +CG + +F++M +N
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS 288
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 289 VSWTSLIVGLA 299
>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
Length = 564
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+C ++ G Q+ V SG +++ + S+L++ G+CG + K+F+++PV+NVV
Sbjct: 67 TACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNVV 126
Query: 64 SWTAIIAAFAQ 74
W +IAA+AQ
Sbjct: 127 CWNVMIAAYAQ 137
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S N+ G + L + V +V+V +++++ GKCG+ + +F+ M V +
Sbjct: 360 ACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMKTTTVAT 419
Query: 65 WTAIIAAFAQ 74
W ++I A+AQ
Sbjct: 420 WNSLIGAYAQ 429
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 36/53 (67%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
V +G + +VG++L++ GKCG D ++F+++ R+V+SW A+++ + Q+
Sbjct: 180 VSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQ 232
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SC S Q A+ G +N+ +G++LI GKCGE + +F +MP R+V
Sbjct: 155 VGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDV 214
Query: 63 VSWTAIIAAFAQ 74
VSWT+++AA+AQ
Sbjct: 215 VSWTSMVAAYAQ 226
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C +TR+++ G +++ + ++ + LI F KC +K+F +PV+N
Sbjct: 21 ISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVKNT 80
Query: 63 VSWTAIIAAFAQ 74
SW II+A+++
Sbjct: 81 HSWNIIISAYSR 92
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRS---GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+++C I G + +RS + N+++ ++LI KCG+ +F+ M
Sbjct: 287 LSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHE 346
Query: 60 RNVVSWTAIIAAFAQ 74
+++VSW ++I FAQ
Sbjct: 347 KDIVSWNSLITGFAQ 361
>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 767
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S ++I G Q + G ++V V ++L++ KCG+ FE MP+R+++SW
Sbjct: 370 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 429
Query: 66 TAIIAAFAQEWEVD 79
TA+I AF+Q +V+
Sbjct: 430 TAMITAFSQAGDVE 443
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q A + GF +NV V +S+++ +CG+ + KMF + ++N+
Sbjct: 499 ISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNL 558
Query: 63 VSWTAIIAAFAQ 74
VSW A++A +AQ
Sbjct: 559 VSWNAMMAGYAQ 570
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S ++ G VR +VY G LI KCG ++F+ + N
Sbjct: 266 LSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNA 325
Query: 63 VSWTAIIAAFAQ 74
VSWT++I AQ
Sbjct: 326 VSWTSLIGGVAQ 337
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
NVY +++IS G+ + K+FEKMP R+ VSW ++++ + E++
Sbjct: 59 NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELE 108
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C S R+I + + G +++++ + L++ CG D Y++F + NV
Sbjct: 1 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 60
Query: 63 VSWTAIIAAFAQ 74
SW +I+ FA
Sbjct: 61 YSWNTMISGFAD 72
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q+ V+SGF ++ VGS+L+ K G D ++F+KMP RN
Sbjct: 149 LSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNE 208
Query: 63 VSWTAIIAAFAQE 75
VSW +II AQ
Sbjct: 209 VSWNSIITGCAQH 221
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C S ++ G Q ++ GF ++V V ++L+ +CG D +F+KM R+
Sbjct: 17 VKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERST 76
Query: 63 VSWTAIIAAFAQEWEV 78
+W A+I AQ ++
Sbjct: 77 RTWNAMITGHAQNRDM 92
>gi|414592000|tpg|DAA42571.1| TPA: hypothetical protein ZEAMMB73_154468 [Zea mays]
Length = 872
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CGS G Q A +SG ++ VG+++IS GKCGE D +FE+M R++VSW
Sbjct: 510 CGSLGFAELGKQMHTFAAKSGLLSARGVGNAIISMYGKCGELKDAISLFERMSCRDLVSW 569
Query: 66 TAIIAA 71
A+I A
Sbjct: 570 NAMITA 575
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+T+ G G L+ +SG ++ VG++LI F + G ++ DV +F++MPV++
Sbjct: 259 LTAAGEGVGQLQGEAVHALSFKSGLETDLSVGNALIGFYAEHGASVEDVVSVFQRMPVKD 318
Query: 62 VVSWTAIIAAFAQEWEVDM 80
V+SWT ++ + + VDM
Sbjct: 319 VISWTGLLNGYMEFGLVDM 337
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+C N R GTQ LA +SG + + V ++++ KCG D + F+ M R+V
Sbjct: 158 TACARRGNPRLGTQVHALAAKSGHSSLLLVANAILGMYVKCGRFGDAMRAFDGMDRRDVS 217
Query: 64 SWTAIIAAFAQ 74
SW A++A +
Sbjct: 218 SWNAVLAGLVE 228
>gi|115438899|ref|NP_001043729.1| Os01g0651100 [Oryza sativa Japonica Group]
gi|113533260|dbj|BAF05643.1| Os01g0651100, partial [Oryza sativa Japonica Group]
Length = 503
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
L+ ++ F +V+VGSS++ KCG D ++F++MP RNVVSW+A+I +A
Sbjct: 56 LSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYA 108
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q ++++ A+ +VGSSL+S KCG Y++F + P RN+ W
Sbjct: 142 CAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIW 201
Query: 66 TAIIAAFAQ 74
A + A AQ
Sbjct: 202 NAGLNASAQ 210
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S ++ G Q A G+ ++++V S+LI KCG D K+F+++P RNV
Sbjct: 93 IKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNV 152
Query: 63 VSWTAIIAAFAQ 74
VSWT++I+ + Q
Sbjct: 153 VSWTSMISGYVQ 164
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LAV+ GF + VG++L+ KCGE K+F+ M +V SW ++IA +AQ
Sbjct: 223 LAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQ 276
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
N+ VG+S++ KCG K F+++ +NV SWT ++A +
Sbjct: 334 NLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYG 377
>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 658
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N +V + LI+ KCG+ D +F +MP RN VSW ++IAAFA+
Sbjct: 376 GKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFAR 435
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85
V +SL+S KCG+ +D K+F++MP+R+V+S + F + E + + +
Sbjct: 92 VWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLL 144
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA+ SG+ + VG+ LI+ KCG ++ +F+ M RNV++ TA+I+ +
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIE 233
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ I G Q L + G + + + S+L+ KCG D + +FE +
Sbjct: 263 LAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDE 322
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VS T I+ AQ + F +
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFFI 346
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +I G Q ++ G+ NVYVGSSLI KCG D F M V+N+
Sbjct: 526 INSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNI 585
Query: 63 VSWTAIIAAFAQ 74
V+W +I +AQ
Sbjct: 586 VAWNEMIHGYAQ 597
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ + G + LAV+ G N +V + L+ KCG D ++F+ M N
Sbjct: 149 LSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNE 208
Query: 63 VSWTAIIAAFAQEWEVD 79
VS+TA++ AQ VD
Sbjct: 209 VSFTAMMGGLAQSGAVD 225
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R IR L VR GF ++ +VG+SLI K + + K+FE M ++VSW ++
Sbjct: 265 RAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILV 324
Query: 70 AAFAQ 74
+ Q
Sbjct: 325 TGYGQ 329
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
NVY ++ IS + G+ + +MP RN VSW +IAA A+
Sbjct: 75 NVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVAR 119
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S ++I G Q + G ++V V ++L++ KCG+ FE MP+R+++SW
Sbjct: 357 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 416
Query: 66 TAIIAAFAQEWEVD 79
TA+I AF+Q +V+
Sbjct: 417 TAMITAFSQAGDVE 430
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q A + GF +NV V +S+++ +CG+ + KMF + ++N+
Sbjct: 486 ISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNL 545
Query: 63 VSWTAIIAAFAQ 74
VSW A++A +AQ
Sbjct: 546 VSWNAMMAGYAQ 557
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S ++ G VR +VY G LI KCG ++F+ + N
Sbjct: 253 LSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNA 312
Query: 63 VSWTAIIAAFAQ 74
VSWT++I AQ
Sbjct: 313 VSWTSLIGGVAQ 324
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
NVY +++IS G+ + K+FEKMP R+ VSW ++++ + E++
Sbjct: 69 NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELE 118
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C S R+I + + G +++++ + L++ CG D Y++F + NV
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70
Query: 63 VSWTAIIAAFAQ 74
SW +I+ FA
Sbjct: 71 YSWNTMISGFAD 82
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q VR G NV+VG+ LIS GKCG ++ ++ ++MP R+VVSW +++A A+
Sbjct: 156 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCAR 215
Query: 75 EWEVD 79
+ D
Sbjct: 216 NGQFD 220
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G + VR N+ + ++LI KCG ++F++M R+VVS
Sbjct: 315 ACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS 374
Query: 65 WTAIIAAFA 73
WT++I+A+
Sbjct: 375 WTSMISAYG 383
>gi|195614946|gb|ACG29303.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 504
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C +SG V ++ VGS+L+ KCG D ++F +MP RNV++WT++I + +
Sbjct: 287 GEQVHCQGTKSGLVLDIKVGSALVDMYAKCGRVEDGRRIFNQMPERNVITWTSMIDGYGK 346
>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Glycine max]
Length = 770
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC ++ G Q+ V+ GF+ +++VGSSLI KCG+ F+ MP RN
Sbjct: 524 VSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNT 583
Query: 63 VSWTAIIAAFAQ 74
V+W +I +AQ
Sbjct: 584 VTWNEMIHGYAQ 595
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++CGS + G + + ++ G +N+YV ++L+ KCG N D ++F +P N V
Sbjct: 146 SACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEV 205
Query: 64 SWTAIIAAFAQ 74
++T ++ AQ
Sbjct: 206 TFTTMMGGLAQ 216
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G + + + GF +VYV SSLI+ KCG+ +F K+P +V
Sbjct: 423 LSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDV 482
Query: 63 VSWTAIIAAFA 73
V W +++A F+
Sbjct: 483 VCWNSMLAGFS 493
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L+V+ GF ++++ +SL+ K G+ K+F + +VVSW +IA +
Sbjct: 268 GKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYG 326
Score = 34.3 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V C + + G R ++ ++ + I KC +F+ +P +N+
Sbjct: 13 VQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNI 72
Query: 63 VSWTAIIAAFAQ 74
SW AI+AA+ +
Sbjct: 73 FSWNAILAAYCK 84
>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
Length = 713
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C ST ++R G + A G ++ V +L++ GKCG D ++ + MPVR V
Sbjct: 243 ACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSV 302
Query: 64 SWTAIIAAFAQ 74
SWTA+IAA+AQ
Sbjct: 303 SWTAMIAAYAQ 313
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + RN+ G + L + +V SSLI+ G+C E + + F++ P ++VV
Sbjct: 142 ACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVC 201
Query: 65 WTAIIAAFAQEW 76
WTA+I+A+A W
Sbjct: 202 WTAMISAYAHNW 213
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAFAQ 74
F ++ + +++I+ GKCG ++FE +P+R +VV+WTA+I A+AQ
Sbjct: 368 FSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQ 417
>gi|302813890|ref|XP_002988630.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
gi|300143737|gb|EFJ10426.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
Length = 612
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G ++ + SGF+ +V+V ++L++ GKCG + + E M V++V
Sbjct: 162 LAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEARGVLEGMEVKSV 221
Query: 63 VSWTAIIAAFAQ 74
VSW A+I A+AQ
Sbjct: 222 VSWNAMITAYAQ 233
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S+ ++ G A+ +GF +V V ++L+S GKC + K+F++MP R+++
Sbjct: 265 ACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCASLDEARKVFDEMPSRDLLD 324
Query: 65 WTAIIAAF 72
I+A F
Sbjct: 325 GN-IVANF 331
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C G + G ++ V +++++ +CG + FE++ R
Sbjct: 397 LALDACAGAVAPTQGKLFHSRVASQGLDSDDTVRNAIVNMYAECGNLDAANREFERIKRR 456
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWT ++AA AQ
Sbjct: 457 DVVSWTVMVAANAQ 470
>gi|218188763|gb|EEC71190.1| hypothetical protein OsI_03082 [Oryza sativa Indica Group]
Length = 486
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
L+ ++ F +V+VGSS++ KCG D ++F++MP RNVVSW+A+I +A
Sbjct: 39 LSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPERNVVSWSALICGYA 91
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q ++++ A+ +VGSSL+S KCG Y++F + P RN+ W
Sbjct: 125 CAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIW 184
Query: 66 TAIIAAFAQ 74
A + A AQ
Sbjct: 185 NAGLNASAQ 193
>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 676
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N +V + LI+ KCG+ D +F +MP RN VSW ++IAAFA+
Sbjct: 376 GKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFAR 435
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA+ SG+ + VG+ LI+ KCG ++ +F +M RNV++WTA+I+ +
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIE 233
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85
V +SL+S KCG+ D K+F++MPVR+V+S + F + E + + +
Sbjct: 92 VWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLL 144
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ I G Q L + G + + + S+L+ KCG D +K+FE +
Sbjct: 263 LAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDE 322
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VS T I+ AQ + F +
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFFI 346
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G +AVRS AN++V S+L+ GKCG D ++F MP RN+
Sbjct: 323 LTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNL 382
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +A
Sbjct: 383 VTWNAMIGGYAH 394
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q+ V GF +V V ++++ F GKC +F+ M VRN VS
Sbjct: 224 ACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVS 283
Query: 65 WTAIIAAFAQ 74
W ++I A+AQ
Sbjct: 284 WCSMIVAYAQ 293
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C R G Q LA+R G++ + +V + + K G ++FE+MP RNV+
Sbjct: 122 ACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVI 181
Query: 64 SWTAII 69
+W A++
Sbjct: 182 AWNAVM 187
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G + +RSGF + +YV +SL+ CG+ YK+F+KMP +++V+W ++I
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195
Query: 71 AFAQ 74
FA+
Sbjct: 196 GFAE 199
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + ++ G N++ + L+ +CG + +F++M +N
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS 288
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 289 VSWTSLIVGLA 299
>gi|302755170|ref|XP_002961009.1| hypothetical protein SELMODRAFT_24718 [Selaginella
moellendorffii]
gi|300171948|gb|EFJ38548.1| hypothetical protein SELMODRAFT_24718 [Selaginella
moellendorffii]
Length = 296
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN---IDVYKMFEKMPV 59
+ SCGS RN+ Q + + + + Y+ + L+ GKCG N + +FE+MP
Sbjct: 6 IRSCGSERNLDRARQIHARIIAADYPLDRYLNNLLVEMYGKCGGNGRLDEARDLFERMPR 65
Query: 60 RNVVSWTAIIAAFAQ 74
R+VV+W+AIIAA AQ
Sbjct: 66 RDVVAWSAIIAANAQ 80
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G AV +G +V V +L++ GKCG+ ++F+ VRN V+
Sbjct: 112 ACAGVGSLGLGRLAHADAVHAGVHVDVVVAGALVNMYGKCGQLGPARRLFDSQQVRNAVT 171
Query: 65 WTAIIAAFAQ 74
WTA++AA+AQ
Sbjct: 172 WTAMVAAYAQ 181
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G AV++G V +V+VGS+L+ K G+ + ++F +MP+RNVVS
Sbjct: 125 ACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 184
Query: 65 WTAIIAAFAQ 74
WTAII +
Sbjct: 185 WTAIITGLVR 194
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + I G Q L + G A++ V +S+++ KCG+ +F +M R++
Sbjct: 325 ISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDI 384
Query: 63 VSWTAIIAAFAQEWEVDMCYTFI 85
VSW+ IIA + Q V + +
Sbjct: 385 VSWSTIIAGYXQGGHVSEAFELL 407
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C + + G + A++ GF + +V ++L + KCG+ +FEKM +R
Sbjct: 222 IALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR 281
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWT II Q
Sbjct: 282 DVVSWTTIITTLVQ 295
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ + G Q + G V S+LI+ KCG + ++F+ ++
Sbjct: 426 LSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDI 485
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I +A+
Sbjct: 486 VSWTAMINGYAE 497
>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G AV++G V +V+VGS+L+ K G+ + ++F +MP+RNVVS
Sbjct: 132 ACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 191
Query: 65 WTAIIAAFAQ 74
WTAII +
Sbjct: 192 WTAIITGLVR 201
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + I G Q L + G A++ V +S+++ KCG+ +F +M R++
Sbjct: 332 ISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDI 391
Query: 63 VSWTAIIAAFAQEWEVDMCYTFI 85
VSW+ IIA ++Q V + +
Sbjct: 392 VSWSTIIAGYSQGGHVSEAFELL 414
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C + + G + A++ GF + +V ++L + KCG+ +FEKM +R
Sbjct: 229 IALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR 288
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWT II Q
Sbjct: 289 DVVSWTTIITTLVQ 302
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q ++ GF+++++ G+SL++ KCG D + F ++P R +
Sbjct: 549 LNACANLSAYEQGKQVHVHVLKFGFISDIFAGNSLVNMYAKCGSIDDADRAFSEIPERGI 608
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I FAQ
Sbjct: 609 VSWSAMIGGFAQ 620
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 16 TQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+Q L+++SGF + YV +SLI GKCG D ++F++ P ++V++T++I A++Q+
Sbjct: 461 SQIHALSLKSGFQFDNYVANSLIDTYGKCGRIKDATRIFQESPFVDLVAFTSMITAYSQD 520
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G AV++G V +V+VGS+L+ K G+ + ++F +MP+RNVVS
Sbjct: 125 ACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 184
Query: 65 WTAIIAAFAQ 74
WTAII +
Sbjct: 185 WTAIITGLVR 194
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + I G Q L + G A++ V +S+++ KCG+ +F +M R++
Sbjct: 325 ISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDI 384
Query: 63 VSWTAIIAAFAQEWEVDMCYTFI 85
VSW+ IIA ++Q V + +
Sbjct: 385 VSWSTIIAGYSQGGHVSEAFELL 407
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C + + G + A++ GF + +V ++L + KCG+ +FEKM +R
Sbjct: 222 IALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR 281
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWT II Q
Sbjct: 282 DVVSWTTIITTLVQ 295
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ + G Q + G V S+LI+ KCG + ++F+ ++
Sbjct: 426 LSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDI 485
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I +A+
Sbjct: 486 VSWTAMINGYAE 497
>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
Length = 615
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG+ + + G + A G +++ +++I+ GKCG + + +F +MP +NV
Sbjct: 149 IDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNV 208
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
+SW+ +IAAF Q D F
Sbjct: 209 ISWSTMIAAFCQNELADEALLF 230
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V +G ++ VG++L++ GKCG D +F+ M +NVVSW A++AA+ Q
Sbjct: 270 VYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQ 321
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
R F++N+ L+ GKCG ++ ++F+ M +NV SWT ++A F Q
Sbjct: 74 RPRFLSNL-----LVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQ 119
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 462
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G + +RSGF + +YV +SL+ CG+ YK+F+KMP +++V+W ++I
Sbjct: 3 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 62
Query: 71 AFAQ 74
FA+
Sbjct: 63 GFAE 66
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + ++ G N++ + L+ +CG + +F++M +N
Sbjct: 96 LSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS 155
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 156 VSWTSLIVGLA 166
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G L V++G V +V+VG++L+SF G G D ++F+ MP RN+
Sbjct: 549 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNL 608
Query: 63 VSWTAIIAAFA 73
VSW ++I F+
Sbjct: 609 VSWNSMIRVFS 619
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +++R G + +R+ +++V S++S CGE V +F+ M +++
Sbjct: 858 LSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSL 917
Query: 63 VSWTAIIAAFAQ 74
VSW +I + Q
Sbjct: 918 VSWNTVITGYLQ 929
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ C +++ FV N V ++ ++ KCG ++F + + V SW A+I AQ
Sbjct: 771 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 828
>gi|302782469|ref|XP_002973008.1| hypothetical protein SELMODRAFT_173113 [Selaginella moellendorffii]
gi|300159609|gb|EFJ26229.1| hypothetical protein SELMODRAFT_173113 [Selaginella moellendorffii]
Length = 601
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQ-YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CGS +++ G++ ++ + R ++N VG++L+ KCG D +F++MP RNVV
Sbjct: 262 ACGSVGDLQTGSEIHREICCRDSLLSNAVVGTALVDLYAKCGRLEDAVLVFQQMPSRNVV 321
Query: 64 SWTAIIAAFAQ 74
SW A+++A A+
Sbjct: 322 SWNALVSACAR 332
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 24 RSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
RSG + +V++G+ L+ G+CG D F ++ +N SW +++ AFAQ
Sbjct: 177 RSGRLDRDVFLGNLLVQMYGRCGSVRDAVAAFGEIAAKNSFSWNSLLVAFAQ 228
>gi|255553939|ref|XP_002518010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542992|gb|EEF44528.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 824
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEKMPV 59
+PV C R+I G + C +++G + VG++L+S KCG + D Y F+ +
Sbjct: 84 LPV--CARMRDIYVGKSFHCYMIKTGMETHTLVGNALVSMYAKCGLVSYDAYAAFQSIYH 141
Query: 60 RNVVSWTAIIAAFAQEWEVD 79
++VVSW AIIA F++ VD
Sbjct: 142 KDVVSWNAIIAGFSENKMVD 161
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C +N++ G + +R ++ + VG++L+SF KC + Y F +P R+++
Sbjct: 294 ACAQLQNLKAGREIHSYVLRHPYLYQDTSVGNALVSFYAKCNNLVAAYHTFLMIPSRDLI 353
Query: 64 SWTAIIAAFA 73
SW +++ AFA
Sbjct: 354 SWNSMLDAFA 363
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 15 GTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + C +R +A+V V ++L+SF G + +F +M +R+++SW AII+ FA
Sbjct: 201 GREIHCYILRHNESLADVSVCNALLSFHLMVGRVKEAELLFRRMELRDLISWNAIISGFA 260
Query: 74 Q--EW 76
EW
Sbjct: 261 SNGEW 265
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 8 STRNIRGGTQYQCLAVRSGFVA--------NVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+TRN T +C V F N+ +S+IS CG D Y +FEKMP
Sbjct: 426 TTRNAMLDTYAKCSNVEYAFKVFQTLSDNRNLVTFNSMISGYVNCGLYDDAYMIFEKMPA 485
Query: 60 RNVVSWTAIIAAFAQ 74
++ +W ++ A+
Sbjct: 486 SDLTTWNLMVRGCAE 500
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC T ++ Q +R+ F + ++ +L+ KCG+ +K+F P R++V
Sbjct: 532 SCAQTASVHLMKQCHGYVIRACF-DDAHLEGALLDLYAKCGDLGYAFKLFHSNPGRDLVV 590
Query: 65 WTAIIAAFA 73
+TA++ +A
Sbjct: 591 FTAMVGGYA 599
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPVRNVVSWTAIIAA 71
G Q +R G +V VG SL+ KC G D K+FE+MP NV+SWTAII A
Sbjct: 70 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 129
Query: 72 FAQEWEVD 79
+AQ E D
Sbjct: 130 YAQSGECD 137
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ G+ +N + ++LIS +CG +++F +M RNV+SWT++I FA+
Sbjct: 276 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 335
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G Q AV+ G + VG+SLIS + G D K F+ + +N+
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 222
Query: 63 VSWTAIIAAFAQ 74
VS+ AI+ +A+
Sbjct: 223 VSYNAIVDGYAK 234
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 51 YKMFEKMPVRNVVSWTAIIAAFAQ 74
YK+F+KMP RN+V+WT +I FAQ
Sbjct: 5 YKVFDKMPERNLVTWTLMITRFAQ 28
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + A+R+ A V VGS+L+ KCG+ + FE MPVRN+
Sbjct: 667 LSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNI 726
Query: 63 VSWTAIIAAFAQ 74
SW ++I+ +A+
Sbjct: 727 YSWNSMISGYAR 738
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 35/51 (68%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++G ++V+ ++L++ + G + K+F++MP +N+VSW+ +++ +AQ
Sbjct: 67 KTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQ 117
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAAFAQE 75
+S FV ++YVGS+L+S + G ID KM FE+M RN V+ ++ A++
Sbjct: 278 KSSFVKDLYVGSALVSGFARYGL-IDSAKMIFEQMDDRNAVTMNGLMVGLARQ 329
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 RGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
R G + +R+ V + +G++L++ KC + +F+ MP ++ VSW +II+
Sbjct: 371 RKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISG 430
Query: 72 F 72
Sbjct: 431 L 431
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q + A GF +VYVG++L+ KCG + +++F MP +N
Sbjct: 336 LSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNE 395
Query: 63 VSWTAIIAAFA 73
VSW A+I+A A
Sbjct: 396 VSWNAMISALA 406
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG +++ GT + V + N ++GS+LI GKCG+ + ++F+ M ++ V+
Sbjct: 237 ACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVT 296
Query: 65 WTAIIAAFAQ 74
W A+I +AQ
Sbjct: 297 WNAMITGYAQ 306
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G C +R G + +V SLI+ +CG+ D K+F+++ +++VS
Sbjct: 136 ACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVS 195
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 196 WNSMISGYSK 205
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPVRNVVSWTAIIAA 71
G Q +R G +V VG SL+ KC G D K+FE+MP NV+SWTAII A
Sbjct: 75 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 134
Query: 72 FAQEWEVD 79
+AQ E D
Sbjct: 135 YAQSGECD 142
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ G+ +N + ++LIS +CG +++F +M RNV+SWT++I FA+
Sbjct: 281 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 340
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G Q AV+ G + VG+SLIS + G D K F+ + +N+
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 227
Query: 63 VSWTAIIAAFAQ 74
VS+ AI+ +A+
Sbjct: 228 VSYNAIVDGYAK 239
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 51 YKMFEKMPVRNVVSWTAIIAAFAQ 74
YK+F+KMP RN+V+WT +I FAQ
Sbjct: 10 YKVFDKMPERNLVTWTLMITRFAQ 33
>gi|356577133|ref|XP_003556682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Glycine max]
Length = 773
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ +++ G + ++S N+YVGS+L+ F KC E +K+ + MP R+V
Sbjct: 547 LMACGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDV 606
Query: 63 VSWTAIIAAFAQ 74
VSWTAII+ A+
Sbjct: 607 VSWTAIISGCAR 618
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + ++ GTQ ++ ++V++G+SL+ KCG +D +F++M +RN
Sbjct: 446 LKACGENKALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNT 505
Query: 63 VSWTAIIAAFAQ 74
+WT+II+ +A+
Sbjct: 506 ATWTSIISGYAR 517
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G A ++ +NV+V S+LI KCG D +++F+ MP RNV
Sbjct: 648 LKACAELEAPIQGKLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVFDNMPERNV 707
Query: 63 VSWTAIIAAFAQ 74
VSW ++I A+A+
Sbjct: 708 VSWESMILAYAR 719
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG ++ G Q ++S + N+ V ++++ F KCG ++ F+ M R+V+ W
Sbjct: 349 CGRRVDLELGKQIHARILKSRW-RNLIVDNAVVHFYAKCGNISSAFRAFDCMAERDVICW 407
Query: 66 TAIIAAFAQE 75
T +I A +Q+
Sbjct: 408 TTMITACSQQ 417
>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
Length = 1215
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 3 VTSC---GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
VT+C G I G L R+G + NVY+G++L+ G G D ++F +MP
Sbjct: 350 VTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPE 409
Query: 60 RNVVSWTAIIAAFA 73
RNVVSWTA++ A +
Sbjct: 410 RNVVSWTALMVALS 423
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ CGS N G Q + SG V V +SLI+ G G D K+F++M +
Sbjct: 454 VSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDT 513
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
+SW A+I+ ++ + C+
Sbjct: 514 ISWNAMISMYSHQGICSKCF 533
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+R+GF+++ YV +SLI+ KCG +F + +N+VSW AIIAA Q
Sbjct: 778 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQ 829
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + ++ N+ VG+SLI+ GKC D K+F+ MP ++VS
Sbjct: 658 ACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVS 717
Query: 65 WTAIIAAFA 73
+ +I +A
Sbjct: 718 YNVLIGGYA 726
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S ++ G Q L ++SG ++ YV ++ + GKCG+ ++ ++ +R
Sbjct: 859 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 918
Query: 63 VSWTAIIAAFAQ 74
W +I+ +A+
Sbjct: 919 QCWNTLISGYAK 930
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 45/69 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + ++R++R G Q A R GF A+++VG++LIS +CG++ ++F++M NV
Sbjct: 110 LKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNV 169
Query: 63 VSWTAIIAA 71
V+W A++ A
Sbjct: 170 VTWNAVLTA 178
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RN 61
+++C G ++GF+ V ++LI KCG +F+ MPV R+
Sbjct: 273 LSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARS 332
Query: 62 VVSWTAIIAAFA 73
+VSWT+IIA A
Sbjct: 333 IVSWTSIIAGLA 344
>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 833
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q VRSG V +V+VG++L+ KCG+ D K+FE+M ++VV+W A++ ++Q
Sbjct: 250 GRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQ 309
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV-- 62
+CG N G +R GF +NV+V +++IS GKC + K+F+++ R +
Sbjct: 135 ACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICD 194
Query: 63 -VSWTAIIAAFAQ 74
V+W +I++ ++
Sbjct: 195 SVTWNSIVSVYSH 207
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G L V++G V +V+VG++L+SF G G D ++F+ MP RN+
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNL 253
Query: 63 VSWTAIIAAFA 73
VSW ++I F+
Sbjct: 254 VSWNSMIRVFS 264
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +++R G + +R+ +++V S++S CGE V +F+ M +++
Sbjct: 503 LSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSL 562
Query: 63 VSWTAIIAAFAQ 74
VSW +I + Q
Sbjct: 563 VSWNTVITGYLQ 574
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ C +++ FV N V ++ ++ KCG ++F + + V SW A+I AQ
Sbjct: 416 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ GG Q + +++ F +N++VG++LI K G D K FE M R+
Sbjct: 293 LSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDN 352
Query: 63 VSWTAIIAAFAQE 75
VSW AII + QE
Sbjct: 353 VSWNAIIVGYVQE 365
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G CL+V+SG ++Y GSSLI KCG+ K+ + MP +V
Sbjct: 394 LSACANVEGFEQGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSV 453
Query: 63 VSWTAIIAAFA 73
VS A+IA +A
Sbjct: 454 VSINALIAGYA 464
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ S ++ G A++ G +NVYVGSSLI+ KC E K+F+ + RNV
Sbjct: 192 LSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNV 251
Query: 63 VSWTAIIAAFAQ 74
V W A++ +AQ
Sbjct: 252 VLWNAMVGGYAQ 263
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN-VV 63
+C +I G + L R+G + S+LI KCG+ ++FE M +N V+
Sbjct: 599 ACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSKNDVI 658
Query: 64 SWTAIIAAFAQ 74
SW ++I FA+
Sbjct: 659 SWNSMIVGFAK 669
>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Glycine max]
Length = 611
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G + C VR G +V V S+L+ KCG Y++F +M RN+
Sbjct: 364 IRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRLFSRMEARNL 423
Query: 63 VSWTAIIAAFAQ 74
++W A+I FAQ
Sbjct: 424 ITWNAMIGGFAQ 435
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ +R G + V G NV+V SSL+ GKCGE +F+ + +N
Sbjct: 266 LNACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNE 325
Query: 63 VSWTAIIAAFAQEWE 77
V+ TA++ + E
Sbjct: 326 VALTAMLGVYCHNGE 340
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIR-GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C N+ G T + + +R N V +LI G+ D K+F+++P +
Sbjct: 162 LKACSQLENLHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPD 221
Query: 62 VVSWTAIIAAFAQ 74
V WTA+I+ A+
Sbjct: 222 YVCWTAVISTLAR 234
>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
mitochondrial-like [Cucumis sativus]
Length = 781
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 1 MPVTS----CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56
+P+T CG RN+ G Q CLAV++G + VG+ LIS KC D +FE
Sbjct: 274 VPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFEL 333
Query: 57 MPVRNVVSWTAIIAAFAQ 74
+ RNV+SWT +I+ + +
Sbjct: 334 INDRNVISWTTMISLYEE 351
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LA++ GF +V+VG++L++ + +D K+F++MP R+ VSW+A+I +AQ
Sbjct: 190 GWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQ 249
Query: 75 E 75
E
Sbjct: 250 E 250
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 8 STRN-IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
+ RN + G L +++ FV+ + VG+SLI+ K D ++F ++P R ++SW
Sbjct: 380 TIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWN 439
Query: 67 AIIAAFAQ 74
A+I+ +AQ
Sbjct: 440 ALISGYAQ 447
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + SGFV+++ V +SL++ K G+ + +F+ + ++VSW I++ F +
Sbjct: 92 GRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEK 151
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 47/72 (65%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G Q+ A+ SG ++ + V ++L++ GKCG D +++F ++ ++
Sbjct: 383 ISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDE 442
Query: 63 VSWTAIIAAFAQ 74
V+WTA+++ +AQ
Sbjct: 443 VTWTALVSGYAQ 454
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG ++ G Q +R+ + N++V S+L+ KC +F+KM +NV
Sbjct: 282 LTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNV 341
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ + Q
Sbjct: 342 VSWTAMLVGYGQ 353
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
++ G Q V+ GF++ V+VGS L+ K G K+F+++P +NVV + +I
Sbjct: 159 VKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLI 216
Score = 34.7 bits (78), Expect = 8.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Y C N+Y ++++S K G ++ +F+ MP R+ VSW ++I+ +A
Sbjct: 58 GSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYA 117
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S G Q A+RSG +V+VG++++ KCG + K+FE+M V++VVS
Sbjct: 240 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 299
Query: 65 WTAIIAAFAQ 74
W A++ ++Q
Sbjct: 300 WNAMVTGYSQ 309
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + R G + SGF NV+VG+ L+S G+CG + ++F++M R V
Sbjct: 133 LKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV 192
Query: 63 ---VSWTAIIAAFAQ 74
VSW +I+AA+ Q
Sbjct: 193 GDLVSWNSIVAAYMQ 207
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G Q ++ GF+++++ G+SL++ KCG D F ++PVR +
Sbjct: 421 LNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGI 480
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 481 VSWSAMIGGLAQ 492
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
Q L+++SGF + YV +SLI GKCG D ++FE+ P+ ++V +T+++ A+AQ+
Sbjct: 334 QIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQD 392
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T+++ G Q + V +GF ++ +V +SL+ KCG D +F+ +P R+V
Sbjct: 17 LKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSV 76
Query: 63 VSWTAIIAAFAQ 74
VSW A+ + +
Sbjct: 77 VSWNALFSCYVH 88
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ ++ ++G LI KC D +F+ MP R++++W A+I+ +Q
Sbjct: 231 GRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQ 290
Query: 75 EWE 77
E
Sbjct: 291 NEE 293
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S G Q A+RSG +V+VG++++ KCG + K+FE+M V++VVS
Sbjct: 259 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 318
Query: 65 WTAIIAAFAQ 74
W A++ ++Q
Sbjct: 319 WNAMVTGYSQ 328
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + R G + SGF NV+VG+ L+S G+CG + ++F++M R V
Sbjct: 152 LKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV 211
Query: 63 ---VSWTAIIAAFAQ 74
VSW +I+AA+ Q
Sbjct: 212 GDLVSWNSIVAAYMQ 226
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q + A GF +VYVG++L+ KCG + +++F MP +N
Sbjct: 336 LSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNE 395
Query: 63 VSWTAIIAAFA 73
VSW A+I+A A
Sbjct: 396 VSWNAMISALA 406
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG +++ GT + V + N ++GS+LI GKCG+ + ++F+ M ++ V+
Sbjct: 237 ACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVT 296
Query: 65 WTAIIAAFAQ 74
W A+I +AQ
Sbjct: 297 WNAMITGYAQ 306
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G C +R G + +V SLI+ +CG+ D K+F+++ +++VS
Sbjct: 136 ACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVS 195
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 196 WNSMISGYSK 205
>gi|125556054|gb|EAZ01660.1| hypothetical protein OsI_23695 [Oryza sativa Indica Group]
Length = 252
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+TSC ++I G Q L V++ F ++++VGSSL+ K ENI + ++F+ +P R+
Sbjct: 118 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAK-SENIQEARRVFDTLPERD 176
Query: 62 VVSWTAIIAAFAQE 75
VVS TAII+ +AQ+
Sbjct: 177 VVSCTAIISGYAQK 190
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C R + G + + + + V++G+ L++ +CG D + ++MP R+V
Sbjct: 17 ITACIERRALWEGRKVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76
Query: 63 VSWTAIIAAFAQ-EWEVDMCYTFI 85
VSWT +I+ ++Q E V+ FI
Sbjct: 77 VSWTTMISGYSQTERHVEALDLFI 100
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++ + NI+ G Q + ++ GF +++ V ++LI+F KCG D + F +MP +N
Sbjct: 624 VSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND 683
Query: 63 VSWTAIIAAFAQ 74
VSW A+I ++Q
Sbjct: 684 VSWNAMITGYSQ 695
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q + SG+ ++ +G++L+S +CG + Y FEK+ ++
Sbjct: 523 ISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDS 582
Query: 63 VSWTAIIAAFAQ 74
+SW +I+ FAQ
Sbjct: 583 ISWNGLISGFAQ 594
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G Q +++GF NVYV S LI K G+ + + + +VVS
Sbjct: 424 TCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVS 483
Query: 65 WTAIIAAFAQ 74
WTA+I+ +AQ
Sbjct: 484 WTALISGYAQ 493
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q +++G +++ V +L+ C + ++MF NV
Sbjct: 321 LSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENV 380
Query: 63 VSWTAIIAAFAQ 74
V W ++ AF +
Sbjct: 381 VLWNVMLVAFGK 392
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 5 SCGSTR-NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C R IR Q + G + + + + LI K G I K+F+ + ++ V
Sbjct: 120 ACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV 179
Query: 64 SWTAIIAAFAQ 74
SW A+I+ F+Q
Sbjct: 180 SWVAMISGFSQ 190
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + ++ G A GF +++V S+LI KCG+ D +F+++P+RNV
Sbjct: 1149 IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNV 1208
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT++I + Q + D
Sbjct: 1209 VSWTSMITGYVQNEQAD 1225
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +I G ++ GF +V+V ++LI F KCG K+FEKM VRNV
Sbjct: 132 IKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNV 191
Query: 63 VSWTAIIAAF 72
VSWT +I+
Sbjct: 192 VSWTTVISGL 201
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ G T + G V+ GF ++ VG++L+ KCG+ + K+F+ M ++
Sbjct: 1264 VSGKGITEGVHG------FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD 1317
Query: 63 VSWTAIIAAFAQ 74
+SW ++IA +AQ
Sbjct: 1318 ISWNSMIAVYAQ 1329
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G ++ NV VG+S+I KCG K F++M +NV
Sbjct: 1360 LLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 1419
Query: 63 VSWTAIIAAFAQE 75
SWTA++A +
Sbjct: 1420 KSWTAMVAGYGMH 1432
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
RG Y A+++ VY+G++LI KCG D ++FE MP +++ +W ++I +
Sbjct: 277 RGIHDY---AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSL 333
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G T++ V NV +++IS CG+ + ++F+++P +NVVSWTA+I +
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYI 233
Query: 74 QEWEVD 79
+ + +
Sbjct: 234 RNQQPE 239
>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1221
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G Q LAVR+GF + ++GS LI +CG ++F++M +V
Sbjct: 48 LVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDV 107
Query: 63 VSWTAIIAAFAQEWEVDM 80
V +T++I+AF + E ++
Sbjct: 108 VGYTSLISAFCRNGEFEL 125
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q+ CLA++ G + + G++LI+ KCG+ F+ M +V
Sbjct: 346 LSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV 405
Query: 63 VSWTAIIAAFAQ 74
SW ++I AQ
Sbjct: 406 TSWNSLIHGHAQ 417
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 48/77 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++R GTQ LA+++GF +V+ ++L+ KCG+ K+F+KMP R++
Sbjct: 125 IKACLASSSLRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDCGRKVFDKMPGRSI 184
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT ++ ++D
Sbjct: 185 VSWTTMLYGLVSNSQLD 201
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
A ++GFV + Y+G++LI KCG D K+F+ M +++ +W ++I +
Sbjct: 276 AHKNGFVLDCYLGTALIDMYSKCGSLQDARKVFDVMQSKSLATWNSMITSLG 327
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +I G Q ++ G+ NVYVGS+LI KCG D F+ M ++N+
Sbjct: 248 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNI 307
Query: 63 VSWTAIIAAFAQ 74
V+W +I +AQ
Sbjct: 308 VAWNEMIHGYAQ 319
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
R GF ++ +VG+SLI KC E + K+FE +P +VSW +I F QE
Sbjct: 1 RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQE 52
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q +VR +++V S L+ KCG+ +F KM R+V
Sbjct: 147 LSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDV 206
Query: 63 VSWTAIIAAF 72
V W +II+
Sbjct: 207 VCWNSIISGL 216
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + V G N Y+GS+LIS KCG+ ++F+ M R+V++
Sbjct: 227 ACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVIT 286
Query: 65 WTAIIAAFAQEWEVD 79
W A+I+ +AQ D
Sbjct: 287 WNAVISGYAQNGMAD 301
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q A + GF +++V ++LI KCG ++F++MP +N
Sbjct: 326 LSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNE 385
Query: 63 VSWTAIIAAFA 73
SW A+I+A A
Sbjct: 386 ASWNAMISALA 396
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + + L + ++ + SLI+ +CG K+F+++P R++VS
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVS 184
Query: 65 WTAIIAAFAQ 74
W ++IA +A+
Sbjct: 185 WNSMIAGYAK 194
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + G Q AV+ G ++VYVG++LI+F G C + +D K+F +MP R V
Sbjct: 123 LKSCAVASALFEGKQVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPERTV 182
Query: 63 VSWTAIIAA 71
VSW +++ A
Sbjct: 183 VSWNSVMTA 191
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G V G V +V +G++L+ GK G +FE+M RNV
Sbjct: 224 LSACAELGYLSLGRWVHSQLVLRGMVLSVQLGTALVDMYGKSGALGYARDVFERMENRNV 283
Query: 63 VSWTAIIAAFAQ 74
+W+A+I AQ
Sbjct: 284 WTWSAMILGLAQ 295
>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 1000
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 3 VTSC---GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
VT+C G I G L R+G + NVY+G++L+ G G D ++F +MP
Sbjct: 48 VTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPE 107
Query: 60 RNVVSWTAIIAAFA 73
RNVVSWTA++ A +
Sbjct: 108 RNVVSWTALMVALS 121
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ CGS N G Q + SG V V +SLI+ G G D K+F++M +
Sbjct: 152 VSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDT 211
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
+SW A+I+ ++ + C+
Sbjct: 212 ISWNAMISMYSHQGICSKCF 231
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+R+GF+++ YV +SLI+ KCG +F + +N+VSW AIIAA Q
Sbjct: 476 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQ 527
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + ++ N+ VG+SLI+ GKC D K+F+ MP ++VS
Sbjct: 356 ACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVS 415
Query: 65 WTAIIAAFA 73
+ +I +A
Sbjct: 416 YNVLIGGYA 424
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S ++ G Q L ++SG ++ YV ++ + GKCG+ ++ ++ +R
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 616
Query: 63 VSWTAIIAAFAQ 74
W +I+ +A+
Sbjct: 617 QCWNTLISGYAK 628
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + AVR+ ++V VGS+L+ KCG+ + FE MPVRN+
Sbjct: 768 LSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNI 827
Query: 63 VSWTAIIAAFAQ 74
SW ++I+ +A+
Sbjct: 828 YSWNSMISGYAR 839
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++GF +V+ ++LI+ + G + K+F++MP +N+VSW+ +I+ + Q
Sbjct: 168 KTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQ 218
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 RGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
R G + RSG V A + +G++L++ GKC + +F+ MP ++ VSW ++I+
Sbjct: 472 RKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISG 531
Query: 72 F 72
Sbjct: 532 L 532
>gi|242078443|ref|XP_002443990.1| hypothetical protein SORBIDRAFT_07g005450 [Sorghum bicolor]
gi|241940340|gb|EES13485.1| hypothetical protein SORBIDRAFT_07g005450 [Sorghum bicolor]
Length = 464
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C +T N+ G Q C A+R F ++ + ++LI KCG +F +M RNV
Sbjct: 220 LTACAATANLAYGMQLHCKALRGEFDSDTILCNALIDMYAKCGRATSARIVFNRMATRNV 279
Query: 63 VSWTAIIAAFAQ 74
VSW+++I A+++
Sbjct: 280 VSWSSMIDAYSR 291
>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
Length = 981
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 3 VTSC---GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
VT+C G I G L R+G + NVY+G++L+ G G D ++F +MP
Sbjct: 48 VTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPE 107
Query: 60 RNVVSWTAIIAAFA 73
RNVVSWTA++ A +
Sbjct: 108 RNVVSWTALMVALS 121
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+R+GF+++ YV +SLI+ KCG +F + +N+VSW AIIAA AQ
Sbjct: 476 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQ 527
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + ++ N+ VG+SLI+ GKC D K+F+ MP +VVS
Sbjct: 356 ACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVS 415
Query: 65 WTAIIAAFA 73
+ +I +A
Sbjct: 416 YNVLIGGYA 424
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ CGS N G Q + SG V V +SLI+ G G D K+F++M +
Sbjct: 152 VSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDT 211
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
+S A+I+ ++ + C+
Sbjct: 212 ISRNAMISMYSHQGICSKCF 231
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S ++ G Q L ++SG ++ YV ++ + GKCG+ ++ +M +R
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQ 616
Query: 63 VSWTAIIAAFAQ 74
W +I+ +A+
Sbjct: 617 QCWNTLISGYAK 628
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++N+ + S F + ++ +SLI KCG ++ +K+F+KM +++
Sbjct: 58 ITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDM 117
Query: 63 VSWTAIIAAFAQ 74
VSWT++IA +AQ
Sbjct: 118 VSWTSLIAGYAQ 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ + +VYVGS+L+ +CG+ +F+K+ +N VSW A+I+ FA+
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230
Query: 75 E 75
+
Sbjct: 231 K 231
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+VG++++ K G ID K+FE++ +++V+W +++ AFAQ
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQ 331
>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa]
gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + A+++ +V+VG+SLISF KCG D ++F ++P R +VSW A+I FAQ
Sbjct: 244 GRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFYELPERTIVSWNAVICGFAQ 303
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG---------ENI----- 48
+ S S ++ G Q+Q A++ G V+VGS+++ K G E+I
Sbjct: 100 IHSSTSLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNI 159
Query: 49 -----------------DVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ +++F++MP RN+V+W A+I F+Q
Sbjct: 160 VSYTALIHGYLKKGRFEEAFELFKQMPERNIVTWNAMIGGFSQ 202
>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
Length = 1135
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G Q LAVR+GF + ++GS LI +CG ++F++M +V
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDV 180
Query: 63 VSWTAIIAAFAQEWEVDM 80
V +T++I+AF + E ++
Sbjct: 181 VGYTSLISAFCRNGEFEL 198
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q+ CLA++ G + + G++LI+ KCG+ F+ M +V
Sbjct: 419 LSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV 478
Query: 63 VSWTAIIAAFAQ 74
SW ++I AQ
Sbjct: 479 TSWNSLIHGHAQ 490
>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
Length = 656
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G Q LAVR+GF + ++GS LI +CG ++F++M +V
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDV 180
Query: 63 VSWTAIIAAFAQEWEVDM 80
V +T++I+AF + E ++
Sbjct: 181 VGYTSLISAFCRNGEFEL 198
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q+ CLA++ G + + G++LI+ KCG+ F+ M +V
Sbjct: 373 LSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV 432
Query: 63 VSWTAIIAAFAQ 74
SW ++I AQ
Sbjct: 433 TSWNSLIHGHAQ 444
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q ++SGF+++V V S+L++ KCG D K F +MP R
Sbjct: 360 LSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTF 419
Query: 63 VSWTAIIAAFAQ 74
V+WT++I+ ++Q
Sbjct: 420 VTWTSMISGYSQ 431
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ ++ G Q Q + + G N+ V +S + + GE + ++FE+M ++++W
Sbjct: 251 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 310
Query: 66 TAIIAAFAQ 74
A+I+ +AQ
Sbjct: 311 NAMISGYAQ 319
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ G Q A++ G + +G+SL S K G + F ++P +NV
Sbjct: 146 LNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNV 205
Query: 63 VSWTAIIAAFAQEWE 77
++WT +I+A A++ E
Sbjct: 206 ITWTTMISACAEDEE 220
>gi|242091425|ref|XP_002441545.1| hypothetical protein SORBIDRAFT_09g029090 [Sorghum bicolor]
gi|241946830|gb|EES19975.1| hypothetical protein SORBIDRAFT_09g029090 [Sorghum bicolor]
Length = 501
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S ++ G Q A++ NVYVGS+L+ GKC + FE +P +NVVSW
Sbjct: 219 CASMKDFVLGIQVHAQALKKRLELNVYVGSALVDMYGKCDHAHEANHAFEVLPEKNVVSW 278
Query: 66 TAIIAAFAQ 74
TA++ A+ Q
Sbjct: 279 TAVMTAYNQ 287
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +R G ++SG ++ V + L++ K G D +++F MP R+V
Sbjct: 317 LNSCAGLAALRTGNTLGACTMKSGHWDHLLVSNGLLNMYSKSGSIEDAHRVFISMPFRDV 376
Query: 63 VSWTAIIAAFAQ 74
VSW II +A
Sbjct: 377 VSWNLIITGYAH 388
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+V + ++LISF KCG K+F+ MP RN VS +++A+A
Sbjct: 44 DVVLHNNLISFYAKCGRVGLARKVFDAMPFRNAVSGNLLMSAYA 87
>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Glycine max]
Length = 703
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + ++ G NV+ GS+L+ KCG D Y +F+ MP RN VSW ++A++++
Sbjct: 113 GQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSR 172
Query: 75 EWEVDMCY 82
+ DM +
Sbjct: 173 VGDCDMAF 180
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G Q+ LA++ GF N YVGSSLI KCG D K FE N
Sbjct: 407 IRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNA 466
Query: 63 VSWTAIIAAFAQ 74
+ W +II +AQ
Sbjct: 467 IVWNSIIFGYAQ 478
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
C A++ G +A+ Y ++LI+ KC E +++F++MP R+ VSW AII+AFA ++
Sbjct: 16 HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75
Query: 79 DMCYTFI 85
D + +
Sbjct: 76 DTTWQLL 82
>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
Length = 648
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G +A RS AN++V S+L+ GKCG D ++F +MP RN+
Sbjct: 328 LTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNL 387
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +A
Sbjct: 388 VTWNAMIGGYAH 399
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q+ + GF +V V +S++ F GKC +F+ M VRN VS
Sbjct: 229 ACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVS 288
Query: 65 WTAIIAAFAQ 74
W +++ A+AQ
Sbjct: 289 WCSMVVAYAQ 298
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 15 GTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
G Q LA+R G++ + +V + + K G ++F++MP RNVV+W A++
Sbjct: 137 GPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVM 192
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++R G + L V++G+ +V+V +SL+S KC D K+F+ +P +NV
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 63 VSWTAIIAAF 72
VSWTAII +
Sbjct: 181 VSWTAIITGY 190
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
SG NV+V +SL+ KCG +F MP +++VSW+ +I +A
Sbjct: 244 SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G L R+ F++N +G++LI KCG +++F M ++
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382
Query: 63 VSWTAIIAAFA 73
V W A++ +
Sbjct: 383 VVWNAMMVGLS 393
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +I G Q ++ G+ NVYVGS+LI KCG D F+ M ++N+
Sbjct: 525 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNI 584
Query: 63 VSWTAIIAAFAQ 74
V+W +I +AQ
Sbjct: 585 VAWNEMIHGYAQ 596
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R R G L VR GF ++ +VG+SLI KC E + K+FE +P +VSW +I
Sbjct: 264 RAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILI 323
Query: 70 AAFAQE 75
F QE
Sbjct: 324 TGFGQE 329
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG + G + +AV+ G AN +V ++L+ KCG D ++F M N
Sbjct: 148 LSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNE 207
Query: 63 VSWTAIIAAFAQEWEVD 79
VS+TA++ AQ +D
Sbjct: 208 VSFTAMMGGLAQTGSID 224
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q +VR +++V S L+ KCG+ +F KM R+V
Sbjct: 424 LSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDV 483
Query: 63 VSWTAIIAAF 72
V W +II+
Sbjct: 484 VCWNSIISGL 493
>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
sativa Japonica Group]
gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 702
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G Q LAVR+GF + ++GS LI +CG ++F++M +V
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDV 180
Query: 63 VSWTAIIAAFAQEWEVDM 80
V +T++I+AF + E ++
Sbjct: 181 VGYTSLISAFCRNGEFEL 198
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q+ CLA++ G + + G++LI+ KCG+ F+ M +V
Sbjct: 419 LSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV 478
Query: 63 VSWTAIIAAFAQ 74
SW ++I AQ
Sbjct: 479 TSWNSLIHGHAQ 490
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++R G + L V++G+ +V+V +SL+S KC D K+F+ +P +NV
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 63 VSWTAIIAAF 72
VSWTAII +
Sbjct: 181 VSWTAIITGY 190
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
SG NV+V +SL+ KCG +F MP +++VSW+ +I +A
Sbjct: 244 SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G L R+ F++N +G++LI KCG +++F M ++
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDR 382
Query: 63 VSWTAIIAAFA 73
V W A++ +
Sbjct: 383 VVWNAMMVGLS 393
>gi|242073858|ref|XP_002446865.1| hypothetical protein SORBIDRAFT_06g023930 [Sorghum bicolor]
gi|241938048|gb|EES11193.1| hypothetical protein SORBIDRAFT_06g023930 [Sorghum bicolor]
Length = 428
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G R +R Q LA R+G A+V+VG++L++ + G K+FE+MP R++VSW
Sbjct: 157 GEARLVR---QLHALASRAGIAADVFVGNALVTAYSRSGSMDAARKVFEEMPARDLVSWN 213
Query: 67 AIIAAFAQEWE 77
A++ AQ+ E
Sbjct: 214 ALVCGLAQDGE 224
>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
LA ++ F +V+VGS+++ KCG D ++F++MP RNVVSW+A+I +A
Sbjct: 151 LASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYA 203
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V C + G Q ++++ A+ +VGSSL+S KCG Y++F P RN+
Sbjct: 234 VRVCAAATLFELGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNL 293
Query: 63 VSWTAIIAAFAQ 74
W A++ A AQ
Sbjct: 294 GIWNAVLIASAQ 305
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ GT C A++SGFV ++ VG++L+S KCG + F +M +R+ VS+
Sbjct: 335 CANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSF 394
Query: 66 TAIIAAFAQ 74
TAII+ + Q
Sbjct: 395 TAIISGYVQ 403
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + C R +NVYV ++L+ F KCG D ++F+KM R+V
Sbjct: 126 LKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDV 185
Query: 63 VSWTAIIAAFA 73
V+W ++I+ F+
Sbjct: 186 VAWNSMISGFS 196
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G+ C A+ GF A+ + ++LI KCG+ K+F++M R +VS
Sbjct: 435 ACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVS 494
Query: 65 WTAIIAAFA 73
W +I A+
Sbjct: 495 WNTMIIAYG 503
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID-VYKMFEKMP-VRNVVSWTAI 68
++R G + VR GFV +V VG+ ++ GKC + ID ++F+ M V+N V+W+A+
Sbjct: 235 SLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKC-QCIDYARRIFDMMGIVKNEVTWSAM 293
Query: 69 IAAF 72
+ A+
Sbjct: 294 VGAY 297
>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14850-like [Cucumis sativus]
Length = 606
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q +RSG+ NV V + LI F GKCGE +F++M RN
Sbjct: 216 LNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNS 275
Query: 63 VSWTAIIAAFAQEWE 77
VSW+++IAA+ Q E
Sbjct: 276 VSWSSLIAAYVQNNE 290
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C I G Q LAV++ N++V S+L+ GKCG + + F MP RN+VS
Sbjct: 319 ACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVS 378
Query: 65 WTAIIAAFAQE 75
W A++ +A +
Sbjct: 379 WNALLGGYAHQ 389
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
G Q LAV+ G + +V+VG S+ K G D YK+F++MP RN+ +W A I+
Sbjct: 127 GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYIS 182
>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Cucumis sativus]
Length = 606
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q +RSG+ NV V + LI F GKCGE +F++M RN
Sbjct: 216 LNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNS 275
Query: 63 VSWTAIIAAFAQEWE 77
VSW+++IAA+ Q E
Sbjct: 276 VSWSSLIAAYVQNNE 290
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C I G Q LAV++ N++V S+L+ GKCG + + F MP RN+VS
Sbjct: 319 ACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVS 378
Query: 65 WTAIIAAFAQE 75
W A++ +A +
Sbjct: 379 WNALLGGYAHQ 389
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
G Q LAV+ G + +V+VG S+ K G D YK+F++MP RN+ +W A I+
Sbjct: 127 GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYIS 182
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
+ RN+ G + CLA++ GF+ +VYV +SLI + G ++ +F++MP R++ SW A
Sbjct: 162 ACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNA 221
Query: 68 IIAAFAQ 74
+I+ + Q
Sbjct: 222 MISGYCQ 228
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + +++G +V+VG+SL GKCG D +F ++P N V
Sbjct: 461 ACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVP 520
Query: 65 WTAIIA 70
W +IA
Sbjct: 521 WNTLIA 526
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G +++ G + ++V + LI + G D K+F++M VR++
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDL 313
Query: 63 VSWTAIIAAF 72
+SW +II A+
Sbjct: 314 ISWNSIIKAY 323
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 12 IRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
IR Q +R G F+ ++ +G++++ K G +F +P ++V+SW II+
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIIS 423
Query: 71 AFAQ 74
+AQ
Sbjct: 424 GYAQ 427
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C N+ Q V+ GFV +VYVG+SLI F K G + +F+ + V+
Sbjct: 161 VRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTT 220
Query: 63 VSWTAIIAAFAQ 74
V+WTAIIA +A+
Sbjct: 221 VTWTAIIAGYAK 232
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + GG Q +R GF +V V + +I F KC + K+F ++ ++V
Sbjct: 262 LSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDV 321
Query: 63 VSWTAIIAAFAQ 74
VSWT +IA Q
Sbjct: 322 VSWTTMIAGCMQ 333
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q CL ++ G + + GS+LI KC D +FE++ R++V W A+ + ++Q+
Sbjct: 478 QIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQL 537
Query: 77 E 77
E
Sbjct: 538 E 538
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + + ++R G Q+ ++ G + +V +SL+ KCG + +K F R++
Sbjct: 565 IAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDI 624
Query: 63 VSWTAIIAAFAQ 74
W ++I+ +AQ
Sbjct: 625 ACWNSMISTYAQ 636
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCGS + ++ G Q A++ + +V + LI KC + K+F+ + NV
Sbjct: 363 LNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINV 422
Query: 63 VSWTAIIAAFAQE 75
VS+ A+I ++++
Sbjct: 423 VSYNAMIEGYSRQ 435
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+V++ ++L+ K D K+F+ MP RN+V+W+++++ + Q
Sbjct: 86 DVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130
>gi|125605681|gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
Length = 701
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S +I G Q A++ GF+ + VGS+L + +C D YK+FE+M R+ VSWTA
Sbjct: 272 SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTA 331
Query: 68 IIAAFA 73
++A FA
Sbjct: 332 MVAGFA 337
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G L +R +V+VG+SL++ KCG+ + F +MPVRNV
Sbjct: 68 LSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNV 127
Query: 63 VSWTAIIAAFAQEWE 77
VSWT IA F Q+ E
Sbjct: 128 VSWTTAIAGFVQDDE 142
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
A+++G +++ V SSL+ + G D K+F+++ V ++V+WT II +AQ
Sbjct: 487 AIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQH 540
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+TSC ++I G Q L V++ F ++++VGSSL+ K ENI + ++F+ +P R+
Sbjct: 150 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAK-SENIQEARRVFDTLPERD 208
Query: 62 VVSWTAIIAAFAQE 75
VVS TAII+ +AQ+
Sbjct: 209 VVSCTAIISGYAQK 222
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C R + G Q + + + V++G+ L++ +CG D + ++MP R+V
Sbjct: 49 ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ ++Q
Sbjct: 109 VSWTTMISGYSQ 120
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT+ ++ G Q L +R V + +SLI KCG+ + ++F+ M R+V
Sbjct: 251 VTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSV 310
Query: 63 VSWTAIIAAFAQ 74
VSW A++ + +
Sbjct: 311 VSWNAMLMGYGR 322
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C N+ G C + SG ++ +G++L+ GKCG+ ++ F+ MP++NVVSW
Sbjct: 219 CSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSW 278
Query: 66 TAIIAAFAQEWEVD 79
T+++ A A+ VD
Sbjct: 279 TSMLCALAKHGSVD 292
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRN 61
+ +C R +A++ G+V V+VG++L+ G D ++F +M P RN
Sbjct: 114 LKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRN 173
Query: 62 VVSWTAIIAAFAQEWEV-DMCYTF 84
VVSW +I AQ E + C F
Sbjct: 174 VVSWNTMIGGCAQAGETSEACALF 197
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G ++ G C S V V +SLI +CG+ +F +MP +N +SW
Sbjct: 352 GQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWN 411
Query: 67 AIIAAFA 73
II A A
Sbjct: 412 VIIGALA 418
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+TSC ++I G Q L V++ F ++++VGSSL+ K ENI + ++F+ +P R+
Sbjct: 118 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAK-SENIQEARRVFDTLPERD 176
Query: 62 VVSWTAIIAAFAQE 75
VVS TAII+ +AQ+
Sbjct: 177 VVSCTAIISGYAQK 190
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C R + G Q + + + V++G+ L++ +CG D + ++MP R+V
Sbjct: 17 ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ ++Q
Sbjct: 77 VSWTTMISGYSQ 88
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT+ ++ G Q L +R V + +SLI KCG+ + ++F+ M R+V
Sbjct: 219 VTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSV 278
Query: 63 VSWTAIIAAFAQ 74
VSW A++ + +
Sbjct: 279 VSWNAMLMGYGR 290
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+TSC ++I G Q L V++ F ++++VGSSL+ K ENI + ++F+ +P R+
Sbjct: 118 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAK-SENIQEARRVFDTLPERD 176
Query: 62 VVSWTAIIAAFAQE 75
VVS TAII+ +AQ+
Sbjct: 177 VVSCTAIISGYAQK 190
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C R + G Q + + + V++G+ L++ +CG D + ++MP R+V
Sbjct: 17 ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ ++Q
Sbjct: 77 VSWTTMISGYSQ 88
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT+ ++ G Q L +R V + +SLI KCG+ + ++F+ M R+V
Sbjct: 219 VTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSV 278
Query: 63 VSWTAIIAAFAQ 74
VSW A++ + +
Sbjct: 279 VSWNAMLMGYGR 290
>gi|15225922|ref|NP_182129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100645|sp|O82363.1|PP203_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g46050, mitochondrial; Flags: Precursor
gi|3702341|gb|AAC62898.1| hypothetical protein [Arabidopsis thaliana]
gi|330255542|gb|AEC10636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 46/80 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + N++ G Q CL V+ G ++ + +SL+ F GKCG ++ ++FE + R++V W
Sbjct: 152 CTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLW 211
Query: 66 TAIIAAFAQEWEVDMCYTFI 85
A+++++ +D + +
Sbjct: 212 NALVSSYVLNGMIDEAFGLL 231
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+S S I G Q + + + ++ V ++L++ K D + FE M VRNVV
Sbjct: 249 SSLLSACRIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVV 308
Query: 64 SWTAIIAAFAQEWE 77
SW A+I FAQ E
Sbjct: 309 SWNAMIVGFAQNGE 322
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q V+ G ++++ + L+ K E D K+F++MP+RN+V+W +I Q
Sbjct: 57 QEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQ 114
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S R + G Q +++GF NVYV S LI K G+ K+F ++ ++VVS
Sbjct: 482 TCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVS 541
Query: 65 WTAIIAAFAQ 74
WTA+IA +AQ
Sbjct: 542 WTAMIAGYAQ 551
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q A SG+ ++ VG++L+S +CG+ D Y F+K+ ++
Sbjct: 581 ISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDN 640
Query: 63 VSWTAIIAAFAQ 74
+SW ++I+ FAQ
Sbjct: 641 ISWNSLISGFAQ 652
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + +++G + V + LI+ KCG D + F +MP +N +SW A++ ++Q
Sbjct: 694 GKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQ 753
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q L ++ GF YV ++L++ + G I ++F M R+
Sbjct: 278 LSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDE 337
Query: 63 VSWTAIIAAFAQE 75
VS+ ++I+ +Q+
Sbjct: 338 VSYNSLISGLSQQ 350
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q+ A+++G +++ + +L+ KC + ++ F NV
Sbjct: 379 LSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENV 438
Query: 63 VSWTAIIAAFA 73
V W ++ A+
Sbjct: 439 VLWNVMLVAYG 449
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S ++ G Q +VR+G V +V+VG++L+S KC + + K+FE + ++VVS
Sbjct: 243 ACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVS 302
Query: 65 WTAIIAAFAQ 74
W A++ ++Q
Sbjct: 303 WNAMVTGYSQ 312
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM---PV 59
+ +CG ++R G + +G +NV++ +S+++ G+CG D ++MF+++ +
Sbjct: 134 LKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKI 193
Query: 60 RNVVSWTAIIAAFAQ 74
++VSW +I+AA+ Q
Sbjct: 194 EDIVSWNSILAAYVQ 208
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANV-YVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C +R G Q A+R+ + V YVG+ LI K G+ +F+ M +RN
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548
Query: 62 VVSWTAIIAAFA 73
VVSWT+++ +
Sbjct: 549 VVSWTSLMTGYG 560
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G L V++G V +++VG++L+SF G G D K+F+ MP RN+
Sbjct: 194 IKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNL 253
Query: 63 VSWTAIIAAFA 73
VSW ++I F+
Sbjct: 254 VSWNSMIRVFS 264
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +++R G + +R+ +++V S++S CGE V +F+ M ++
Sbjct: 487 LSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSL 546
Query: 63 VSWTAIIAAFAQ 74
VSW +I Q
Sbjct: 547 VSWNTVITGHLQ 558
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C R I G AV+ + V ++L+ K G ID +F+ +
Sbjct: 283 LPV--CAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNK 340
Query: 61 NVVSWTAIIAAFAQEWEV 78
NVVSW ++ F+ E ++
Sbjct: 341 NVVSWNTMVGGFSAEGDI 358
>gi|242096754|ref|XP_002438867.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
gi|241917090|gb|EER90234.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
Length = 610
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ G+ + R G + + G NV V SS + KCG +D K+F++M VRN
Sbjct: 253 MTALGNLKRARQGREAHAQVLTRGLCGNVIVESSTLDMYAKCGMMVDAQKVFDRMKVRNA 312
Query: 63 VSWTAIIAAFAQEWEVDM 80
VSW A++ + Q + +M
Sbjct: 313 VSWCALLGGYCQSGKHEM 330
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G + C +R +V V S+L+ KCG Y++F + VRN+++
Sbjct: 354 SCAGLSAVKLGKEIHCRFMRMRGCGDVIVESALVDLYAKCGAVEYAYRVFRRSSVRNMIT 413
Query: 65 WTAIIAAFAQ 74
W A+I AQ
Sbjct: 414 WNAMICGCAQ 423
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C R++R G V G+ + V S+L+ G G D + FE+M + +
Sbjct: 153 ACAVLRDLRAGACVHGTTVVRGYADDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGIC 212
Query: 65 WTAIIAAFAQ-EW 76
+T++I+AF + +W
Sbjct: 213 YTSLISAFVRNDW 225
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q V+ GF +++V +SLI F G+CGE + ++F+KM RNV
Sbjct: 146 LSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNV 205
Query: 63 VSWTAIIAAFAQ 74
VSWT++I +A+
Sbjct: 206 VSWTSLIGGYAK 217
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
++++G++L+ +CG+ ++F KM R+V +WTA I A A E
Sbjct: 507 DMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAME 552
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C ++ G +R+G V +++I+ KCG+ ++F++M +
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
VSW ++IA F + +++ +
Sbjct: 408 VSWNSLIAGFVRNGDMESAW 427
>gi|115479139|ref|NP_001063163.1| Os09g0413300 [Oryza sativa Japonica Group]
gi|113631396|dbj|BAF25077.1| Os09g0413300 [Oryza sativa Japonica Group]
Length = 810
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G L +R +V+VG+SL++ KCG+ + F +MPVRNV
Sbjct: 177 LSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNV 236
Query: 63 VSWTAIIAAFAQEWE 77
VSWT IA F Q+ E
Sbjct: 237 VSWTTAIAGFVQDDE 251
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S +I G Q A++ GF+ + VGS+L + +C D YK+FE+M R+ VSWTA
Sbjct: 381 SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTA 440
Query: 68 IIAAFA 73
++A FA
Sbjct: 441 MVAGFA 446
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
A+++G +++ V SSL+ + G D K+F+++ V ++V+WT II +AQ
Sbjct: 596 AIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQH 649
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +I G Q ++ G+ NVYVGS+LI KCG D F+ M ++N+
Sbjct: 232 INSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNI 291
Query: 63 VSWTAIIAAFAQ 74
V+W +I +AQ
Sbjct: 292 VAWNEMIHGYAQ 303
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q +VR +++V S L+ KCG+ +F KM R+V
Sbjct: 131 LSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDV 190
Query: 63 VSWTAIIAAF 72
V W +II+
Sbjct: 191 VCWNSIISGL 200
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +I G +AV+ G + +++VG+++I+ GKCG + ++F+KMP +N+
Sbjct: 217 IKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNL 276
Query: 63 VSWTAIIAAFAQ 74
+SW ++I F++
Sbjct: 277 ISWNSLIRGFSE 288
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C N+ G +AV+ G V + V ++LI KCG + +F K+ +
Sbjct: 320 LPV--CSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK 377
Query: 61 NVVSWTAIIAAFAQE 75
+VVSW ++I A+++E
Sbjct: 378 SVVSWNSMIGAYSRE 392
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + +R+G N +V SL+S C + FE+M +N V
Sbjct: 526 ACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVC 585
Query: 65 WTAIIAAFAQ 74
W A+++ ++Q
Sbjct: 586 WNAMLSGYSQ 595
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 1 MPVTSCGSTRNIRGGTQY-QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
M + CG +N+ G + + L V S F + + + LI+ CG ++ +F+++
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLN 171
Query: 60 RNVVSWTAIIAAFAQ-EWEVDMCYTFI 85
+N+ W A+++ + + E + +TF+
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFL 198
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G + A+R G NVYVG++L+ KCG+ +F KMP +N
Sbjct: 327 LSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNE 386
Query: 63 VSWTAIIAAFA 73
SW A+I A
Sbjct: 387 ASWNALICGLA 397
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C N+ G + +G + +GS+L+ KCGE + ++F+ + ++V
Sbjct: 226 LTACRDAGNLVLGRWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDV 285
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +AQ
Sbjct: 286 VAWNAMITGYAQ 297
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG +I G + L R G NV+V ++LI KCG D + +F+++P++NV
Sbjct: 304 LPACGLMGSIHRGKELHGLIYRMGXDMNVFVATALIDXYSKCGTVKDAWDVFDRIPIKNV 363
Query: 63 VSWTAIIAAFAQEWEVD 79
SW A+I + + VD
Sbjct: 364 ASWNAMIGCYGKHGLVD 380
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + G + C+ R+G V V +S I KCG K+F+ M R+V
Sbjct: 133 LKQCVGLMDFNKGKEVHCVISRTGLGNVVSVANSXIDMYCKCGHVGYGRKVFDGMIERDV 192
Query: 63 VSWTAIIAAF 72
VSWT++I +
Sbjct: 193 VSWTSMICGY 202
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q ++SGF+++V V S+L++ KCG D K F +MP R
Sbjct: 400 LSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTF 459
Query: 63 VSWTAIIAAFAQ 74
V+WT++I+ ++Q
Sbjct: 460 VTWTSMISGYSQ 471
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
S G+ R + G ++G A+++V +SL++ +CG D ++F+ MP RNVV+
Sbjct: 93 SLGAARAVHGHM------AKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVT 146
Query: 65 WTAIIAAF 72
WTA++ +
Sbjct: 147 WTALVTGY 154
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ ++ G Q Q + + G N+ V +S + + GE + ++FE+M ++++W
Sbjct: 291 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 350
Query: 66 TAIIAAFAQ 74
A+I+ +AQ
Sbjct: 351 NAMISGYAQ 359
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ G Q A++ G + +G+SL S K G + F ++P +NV
Sbjct: 186 LNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNV 245
Query: 63 VSWTAIIAAFAQEWE 77
++WT +I+A A++ E
Sbjct: 246 ITWTTMISACAEDEE 260
>gi|46403989|gb|AAS93059.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 810
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G L +R +V+VG+SL++ KCG+ + F +MPVRNV
Sbjct: 177 LSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNV 236
Query: 63 VSWTAIIAAFAQEWE 77
VSWT IA F Q+ E
Sbjct: 237 VSWTTAIAGFVQDDE 251
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S +I G Q A++ GF+ + VGS+L + +C D YK+FE+M R+ VSWTA
Sbjct: 381 SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTA 440
Query: 68 IIAAFA 73
++A FA
Sbjct: 441 MVAGFA 446
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
A+++G +++ V SSL+ + G D K+F+++ V ++V+WT II +AQ
Sbjct: 596 AIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQH 649
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +I G +AV+ G + +++VG+++I+ GKCG + ++F+KMP +N+
Sbjct: 217 IKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNL 276
Query: 63 VSWTAIIAAFAQ 74
+SW ++I F++
Sbjct: 277 ISWNSLIRGFSE 288
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C N+ G +AV+ G V + V ++LI KCG + +F K+ +
Sbjct: 320 LPV--CSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENK 377
Query: 61 NVVSWTAIIAAFAQE 75
+VVSW ++I A+++E
Sbjct: 378 SVVSWNSMIGAYSRE 392
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + +R+G N +V SL+S C + FE M +N V
Sbjct: 526 ACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVC 585
Query: 65 WTAIIAAFAQ 74
W A+++ ++Q
Sbjct: 586 WNAMLSGYSQ 595
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 1 MPVTSCGSTRNIRGGTQY-QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
M + CG +N+ G + + L V S F + + + LI+ CG ++ +F+++
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLN 171
Query: 60 RNVVSWTAIIAAFAQ-EWEVDMCYTFI 85
+N+ W A+++ + + E + +TF+
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFL 198
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC ++I+ Q L V++ F ++++VGSSL+ GK G + K+F+ +P R+
Sbjct: 149 LTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDT 208
Query: 63 VSWTAIIAAFAQ 74
VS TAII+ +AQ
Sbjct: 209 VSCTAIISGYAQ 220
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G Q V++ + VY+ + LI +CG D + + MP RNV
Sbjct: 48 ITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNV 107
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 108 VSWTAMISGYSQ 119
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TS ++ G Q L +R + + +SLI KCG+ + ++F+ MP R+
Sbjct: 250 LTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSA 309
Query: 63 VSWTAIIAAFAQ 74
+SW A++ + +
Sbjct: 310 ISWNAMLMGYGR 321
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S + G Q L +R+GF +++++ ++L+S CG+ + +F MP R++VSW
Sbjct: 518 CKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSW 577
Query: 66 TAIIAAFAQEWEVDMCYTF 84
IIA F Q E + +
Sbjct: 578 NTIIAGFVQHGENQFAFDY 596
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G + G +YVG++L+S KCG D ++F + RNV
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNV 372
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
VSWTA+IA FAQ ++ + F
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLF 394
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + L + +V VG+ LIS KCG D + +F +P +NV
Sbjct: 616 LNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNV 675
Query: 63 VSWTAIIAAFAQ 74
SWT++I +AQ
Sbjct: 676 YSWTSMITGYAQ 687
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +N+ G + L + +G+ +++VG++LI+ KCG D K+F +P R++
Sbjct: 212 LNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDL 271
Query: 63 VSWTAIIAAFAQ 74
++WT++I A+
Sbjct: 272 ITWTSMITGLAR 283
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G Q +++G++ + V ++L+S KCG +D +FE++ +NVV+
Sbjct: 416 ACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVA 475
Query: 65 WTAIIAAFAQEWEVD 79
W A+I A+ Q + D
Sbjct: 476 WNAMITAYVQHEKYD 490
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +N+ G + S ++++ + LIS KCG ++F++MP ++V SW
Sbjct: 114 CIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSW 173
Query: 66 TAIIAAFAQ 74
++ + Q
Sbjct: 174 NLLLGGYVQ 182
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R++ G + ++SG N Y+ ++L+S KCG D ++F+ + RN+VSW
Sbjct: 106 CARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSW 165
Query: 66 TAIIAAFA---QEWEVDMCY 82
TA+I AF Q E CY
Sbjct: 166 TAMIEAFVAGNQNLEAYKCY 185
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S ++ G V +G+ +VY+ S+L+S KCG D +F +M RNV
Sbjct: 406 LTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNV 465
Query: 63 VSWTAIIAAFAQ 74
V+WTA+I AQ
Sbjct: 466 VAWTAMITGCAQ 477
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
++G VG+SL+ KCG+ +F+K+P +NVV+WT +IA +AQ+ +VD+
Sbjct: 225 KAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + G + ++SG+ ++V ++LI+ KCG + K+F +P R+VV+W
Sbjct: 308 CTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTW 367
Query: 66 TAIIAAFAQ 74
TA++ +AQ
Sbjct: 368 TAMVTGYAQ 376
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q ++SGF+++V V S+L++ KCG D K F +MP R
Sbjct: 400 LSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTF 459
Query: 63 VSWTAIIAAFAQ 74
V+WT++I+ ++Q
Sbjct: 460 VTWTSMISGYSQ 471
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
S G+ R + G ++G A+++V +SL++ +C D ++F+ MP RNVV+
Sbjct: 93 SLGAARAVHGHM------AKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVT 146
Query: 65 WTAIIAAF 72
WTA++ +
Sbjct: 147 WTALVTGY 154
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ ++ G Q Q + + G N+ V +S + + GE + ++FE+M ++++W
Sbjct: 291 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 350
Query: 66 TAIIAAFAQ 74
A+I+ +AQ
Sbjct: 351 NAMISGYAQ 359
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ G Q A++ G + +G+SL S K G + F ++P +NV
Sbjct: 186 LNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNV 245
Query: 63 VSWTAIIAAFAQEWE 77
++WT +I+A A++ E
Sbjct: 246 ITWTTMISACAEDEE 260
>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 543
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G AV++ F ++VYV ++L+ KCG+ D K+F++MPV+++V
Sbjct: 149 ACASNSLLLQGKVAHGDAVKADFDSDVYVKAALVDMYAKCGQFCDGRKIFDEMPVKDLVC 208
Query: 65 WTAIIAAFAQ 74
WTA+I A+ Q
Sbjct: 209 WTAMITAYEQ 218
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A+R F+ ++V +S+++ KCG +F+ M RNV+SW ++++ + Q
Sbjct: 267 AIRRSFLKEIFVANSILAMHTKCGNMEKSCLIFDMMDERNVISWNSMLSGYTQ 319
>gi|125563707|gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indica Group]
Length = 810
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G L +R +V+VG+SL++ KCG+ + F +MPVRNV
Sbjct: 177 LSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNV 236
Query: 63 VSWTAIIAAFAQEWE 77
VSWT IA F Q+ E
Sbjct: 237 VSWTTAIAGFVQDDE 251
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S +I G Q A++ GF+ + VGS+L + +C D YK+FE+M R+ VSWTA
Sbjct: 381 SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTA 440
Query: 68 IIAAFA 73
++A FA
Sbjct: 441 MVAGFA 446
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
A+++G +++ V SSL+ + G D K+F+++ V ++V+WT II +AQ
Sbjct: 596 AIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQH 649
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +N+ G RS + ++ +SLI KCG D +F+KMP R+V
Sbjct: 67 IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDV 126
Query: 63 VSWTAIIAAFAQEW 76
VSWT +IA +AQ +
Sbjct: 127 VSWTYLIAGYAQNY 140
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAAFA 73
G Q LAV+ + +VYVGS+L+ +C E +D+ M F+++ +N VSW A+IA FA
Sbjct: 180 GEQMHALAVKYNWDEDVYVGSALLDMYARC-EQMDMAIMVFDRLVSKNEVSWNALIAGFA 238
Query: 74 QE 75
++
Sbjct: 239 RK 240
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SG +VG++++ K G +D K+F++M R++V+W ++ A AQ
Sbjct: 289 IKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 340
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++++ G + AVR G V N++V S+L+S KC + +F+ MP R+V
Sbjct: 186 LPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV 245
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSW ++ A+ + E + ++ +
Sbjct: 246 VSWNGVLTAYFKNKEYEKGFSLFL 269
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A R G +++V+VG++LI GKC ++F+ + VR+VVSWT++ + + +
Sbjct: 104 ATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 156
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + N+R G + C R V ++ ++L+ KCG+ +F+ M ++V
Sbjct: 322 LPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV 381
Query: 63 VSWTAIIAAFAQE 75
V+W +I A A
Sbjct: 382 VAWNTMIIANAMH 394
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++++ GTQ L ++S F+ +VY+GS+LI KCG ++F+ M RNV
Sbjct: 158 LSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNV 217
Query: 63 VSWTAIIAAFAQ 74
VSW ++I + Q
Sbjct: 218 VSWNSLITCYEQ 229
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++++R + +++ F V++ + LI GKCG D K+F++MP +NV S
Sbjct: 28 SCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEKNVFS 87
Query: 65 WTAIIAAFAQEWEVD 79
W AI++ + +D
Sbjct: 88 WNAIVSTLVKSGFLD 102
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +C + +++ G Q ++ GF ++V+VG++LI KCG + ++FE
Sbjct: 392 LNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFEN 451
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I +AQ
Sbjct: 452 MVERDYVSWNAMIVGYAQ 469
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQ-YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
V++C S + G + + C+ R ++ + ++L+ KCG + +F++MP+RN
Sbjct: 259 VSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRN 318
Query: 62 VVSWTAIIAAFAQEWEV 78
VVS T++++ +A+ V
Sbjct: 319 VVSETSMVSGYAKTASV 335
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G +AVRS +N++V S+L+ GKCG D ++F +MP RN+
Sbjct: 330 LTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNL 389
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +A
Sbjct: 390 VTWNAMIGGYAH 401
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C N+ G Q+ + GF +V V +S++ F GKC +F+ M VRN VS
Sbjct: 231 ACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVS 290
Query: 65 WTAIIAAFAQ 74
W +++ A+AQ
Sbjct: 291 WCSMVVAYAQ 300
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 15 GTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
GTQ LA+R G++ + +V + + K G ++F++MP RNVV+W A++
Sbjct: 139 GTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVM 194
>gi|302762016|ref|XP_002964430.1| hypothetical protein SELMODRAFT_61701 [Selaginella moellendorffii]
gi|300168159|gb|EFJ34763.1| hypothetical protein SELMODRAFT_61701 [Selaginella moellendorffii]
Length = 603
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T G+ R + G +A F + + G++LIS GKCG D +F+ M RNV
Sbjct: 91 LTCLGALRMLEQGRVVHGIAREMSFSSRITAGNALISMYGKCGSIPDAKNVFDSMQERNV 150
Query: 63 VSWTAIIAAFAQ 74
V+W A+IAA+AQ
Sbjct: 151 VTWNALIAAYAQ 162
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTF 84
++L+ G+CG+ D +FE +P ++VV+WTA++ +FAQ D + +
Sbjct: 223 TALVKMYGRCGQVEDAEVVFEGIPWKDVVAWTAMVTSFAQNGFSDRAFEY 272
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C S R + + R+ F ++ V ++L+S G+ G D F+ + RN+
Sbjct: 292 VDACDSAHRCR---EIRTRMERAPFQSDTSVKNALLSRFGRLGSIDDARDAFKSIGKRNL 348
Query: 63 VSWTAIIAAFAQ 74
VSW A+I A Q
Sbjct: 349 VSWNAMIFALVQ 360
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
A+ G +N Y+G+ L+ +CG + K+F+ + +NV +WT ++ +A
Sbjct: 9 ALSHGHRSNRYLGNCLMIMYNRCGYVHEAQKIFDDIVWKNVFTWTVLMKGYA 60
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS + G + + A N+YV + L+ GKCG + ++FE MPV+N
Sbjct: 338 LSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNE 397
Query: 63 VSWTAIIAAFAQE 75
+W A+I A+A +
Sbjct: 398 ATWNAMITAYAHQ 410
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G + +A+ + ++GS LI+ GKCG+ ++F +M ++ V+
Sbjct: 239 ACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVA 298
Query: 65 WTAIIAAFAQ 74
W A+I ++Q
Sbjct: 299 WNAMITVYSQ 308
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG I G + G + ++ SLI KCG K+F+++ R VS
Sbjct: 138 ACGKREEIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVS 197
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 198 WNSMISGYSE 207
>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130 [Vitis vinifera]
gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANV--YVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ +CG+ IRGGTQ + GF ++ + S+++ KCG + K+F+++ +
Sbjct: 213 LKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK 272
Query: 61 NVVSWTAIIAAFAQE 75
N++SW+A+I FAQE
Sbjct: 273 NLISWSALIQGFAQE 287
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G Q + V+SGF VG++ I KCG ++F KMP RN+
Sbjct: 112 LKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNL 171
Query: 63 VSWTAIIAAFAQE 75
VSW A+IA E
Sbjct: 172 VSWNAMIAGHTHE 184
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q AV GF ++ + + LI GKC +F++M RNVVSWTA++ + Q
Sbjct: 23 GLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQ 82
Query: 75 E 75
E
Sbjct: 83 E 83
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 12 IRGGTQYQC--LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+ G Q C L V SG ++ V +S+I KCG + ++F +M VRNVVSWT +I
Sbjct: 325 VEQGKQMHCYILKVPSGL--DISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMI 382
Query: 70 AAFAQ 74
+ +
Sbjct: 383 TGYGK 387
>gi|147843478|emb|CAN82063.1| hypothetical protein VITISV_016431 [Vitis vinifera]
Length = 755
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A++SGF++++ VG+S+I+ KC D K+F MP ++VSW
Sbjct: 451 CGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMXDAIKVFNVMPAHDIVSW 510
Query: 66 TAIIAA 71
+IA
Sbjct: 511 NGLIAG 516
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C ++ G Q + ++ GF+ +V ++L+ GKCG V ++F++M R++
Sbjct: 180 LTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDXVLQLFDEMXHRDI 239
Query: 63 VSWTAIIAAFAQE 75
SW +I++ +E
Sbjct: 240 ASWNTVISSVVKE 252
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK--MPVR 60
+ +CG + Q ++ GF +N + ++L+ C +CG D KMF +
Sbjct: 344 LNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGXFXQS 403
Query: 61 NVVSWTAIIAAFAQ 74
+ WT++I +A+
Sbjct: 404 GSIIWTSMICGYAR 417
>gi|297823509|ref|XP_002879637.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325476|gb|EFH55896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PVR 60
+++CGS N+R G + Q L +RSGF A+ V +SLI GKC + + K+F M R
Sbjct: 77 LSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKCSDTLSANKVFRDMCCHSR 136
Query: 61 NVVSWTAIIAAF--AQEWEVDM 80
N V+W +++ A+ A+++E +
Sbjct: 137 NEVTWCSLLFAYMNAEQFEAAL 158
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + N+ G + VR+G+ + V +S++SF K G DV + E + V
Sbjct: 211 MNACADSSNVVYGWMVHAVMVRNGWYSAVEAKNSVLSFYAKLGCKDDVMRELESIEVLTQ 270
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +II A + E D
Sbjct: 271 VSWNSIIDACVKVGETD 287
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G + CL + GF YVG++L++ KCG+ + + F + +++VSW ++ AF
Sbjct: 354 HGKMIHGCL-IHCGFQGYAYVGNALVNLYAKCGDIKESNRAFGDIANKDLVSWNTMLFAF 412
Query: 73 A 73
Sbjct: 413 G 413
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
+S+I C K GE ++F P +N+V+WT +IA + + + + F V
Sbjct: 274 NSIIDACVKVGETDKALEVFRLAPEKNIVTWTTMIAGYGRNGDGEQALRFFV 325
>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g47840
gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 706
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + NI G AV++ +++VYVGSSL+ + G+ ++F +MP RN
Sbjct: 115 LKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNA 174
Query: 63 VSWTAIIAAFAQ 74
V+WTAII
Sbjct: 175 VTWTAIITGLVH 186
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C R ++ G + GFV + V +SL + +CGE D +FE M R
Sbjct: 214 IALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSER 273
Query: 61 NVVSWTAIIAAFAQ-EWEVDMCYTFI 85
+VVSWT++I A+ + EV TFI
Sbjct: 274 DVVSWTSLIVAYKRIGQEVKAVETFI 299
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G Q C + G ++ V +S++ CG + +F+ M R+++
Sbjct: 318 SACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDII 377
Query: 64 SWTAIIAAFAQ 74
SW+ II + Q
Sbjct: 378 SWSTIIGGYCQ 388
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
I GG Q LA+ G N V SSLI+ KCG + +F + ++VS TA+I
Sbjct: 427 IEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMING 486
Query: 72 FAQE 75
+A+
Sbjct: 487 YAEH 490
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q C V+ GF +VYV + LI F G CG K+F++MP R++
Sbjct: 139 LKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSL 198
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++I A + E D
Sbjct: 199 VSWNSMIDALVRVGEYD 215
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q ++ GF ++VY+ +SLI F CG + +F+KMP R++
Sbjct: 138 LKACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCGCSEPAQYVFDKMPARSL 197
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSW A+I A Q E D V
Sbjct: 198 VSWNAMIDALVQFGEFDAALKLFV 221
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTF 84
+V V + L+ KCG ++FE+M R++ SW ++I FA + ++ + +
Sbjct: 268 DVLVDNCLLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILGFAMHGKAELTFEY 322
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + + N Y+GS+LI GKCG+ I ++F+ MP ++VV+
Sbjct: 238 ACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVT 297
Query: 65 WTAIIAAFAQ 74
W AII +AQ
Sbjct: 298 WNAIITGYAQ 307
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G + A G +VYV S+LI KCG D ++FE MP +N
Sbjct: 337 LSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNE 396
Query: 63 VSWTAIIAAFA 73
VSW A+I+A A
Sbjct: 397 VSWNAMISALA 407
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ R + G CL ++G + YV SLI+ +CGE K+F++M R++VS
Sbjct: 137 ACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVS 196
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 197 WNSMISGYSK 206
>gi|302776320|ref|XP_002971335.1| hypothetical protein SELMODRAFT_94945 [Selaginella
moellendorffii]
gi|300161317|gb|EFJ27933.1| hypothetical protein SELMODRAFT_94945 [Selaginella
moellendorffii]
Length = 614
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C STR++ Q Q R GF + Y+G+ L+ GKCG D ++F+++ RN+ SW
Sbjct: 22 CASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRNIFSW 81
Query: 66 TAIIAAFA 73
T ++ A+A
Sbjct: 82 TIMLGAYA 89
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V SGF +N + ++L+S G G D +F+ + + VVSW A++ A+AQ
Sbjct: 183 VESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQ 234
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C + G + V G+ +V VG++L+ F KC + +F+ + +++
Sbjct: 390 VSVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKCHDVDTARSVFDGIEGKDI 449
Query: 63 VSWTAIIAAFAQ 74
V+W +I F +
Sbjct: 450 VTWNVMITGFVR 461
>gi|242093560|ref|XP_002437270.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
gi|241915493|gb|EER88637.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
Length = 597
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ G+ + R G + V G NV V SS + KCG +D K+F++M VRN
Sbjct: 255 MTALGNLKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKVRNA 314
Query: 63 VSWTAIIAAFAQ 74
VSW A++ + Q
Sbjct: 315 VSWCALLGGYCQ 326
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G + C +R +V V S+L+ KCG Y++FE+ VRN+++
Sbjct: 356 SCSGLSAVKLGKEIHCRFMRMRGCRDVIVESALVDLYAKCGVVEYAYRVFERSSVRNMIT 415
Query: 65 WTAIIAAFAQ 74
W A+I AQ
Sbjct: 416 WNAMICGCAQ 425
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C R++R G V G+ + V S+L+ G G D + FE+M + +
Sbjct: 155 ACAVLRDLRAGACVHGTVVVRGYGDDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGIC 214
Query: 65 WTAIIAAFAQ-EW 76
+T++I+AF + +W
Sbjct: 215 YTSLISAFVRNDW 227
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S N++ G Q C ++ G NV+V ++L+ KCG + K+F ++P RN
Sbjct: 250 LQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNE 309
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W +I + Q + D
Sbjct: 310 VTWNTMIVGYVQSGDGD 326
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + GTQ L++++ + +V VG++LI KCG + +F+ + R+ +S
Sbjct: 353 ACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS 412
Query: 65 WTAIIAAFA 73
W A+I+ ++
Sbjct: 413 WNAMISGYS 421
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + + C+ +++ + ++YVG L+ K G+ DV ++FE+MP +V+ W+ +I+ +A
Sbjct: 161 GKSVHGCV-LKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYA 219
Query: 74 Q 74
Q
Sbjct: 220 Q 220
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G +N +VG++LI CG + F+ + +++VSWT ++A +A+
Sbjct: 71 GHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G +AVRS AN++V S+L+ GKCG D ++F + P RN+
Sbjct: 328 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 387
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +A
Sbjct: 388 VTWNAMIGGYAH 399
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q+ V+ GF +V V +S++ F GKC +F+ M VRN VS
Sbjct: 229 ACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVS 288
Query: 65 WTAIIAAFAQ 74
W +++AA+AQ
Sbjct: 289 WCSMVAAYAQ 298
>gi|297742819|emb|CBI35573.3| unnamed protein product [Vitis vinifera]
Length = 12183
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPVRNVVSWTAIIAA 71
G Q +R G +V VG SL+ KC G D K+FE+MP NV+SWTAII A
Sbjct: 77 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 136
Query: 72 FAQEWEVD 79
+ Q E D
Sbjct: 137 YVQSGECD 144
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV CG+ ++R G Q + GF NV++ SSLI KCGE + +F+KM
Sbjct: 278 IPV--CGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSP 335
Query: 61 NVVSWTAIIAAFA 73
+VVSWTA+I +A
Sbjct: 336 DVVSWTAMIMGYA 348
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+++ G + A R+GF ++V+VGSSLI C K+F+ +PVR+ + W +++A
Sbjct: 185 DVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLA 244
Query: 71 AFAQEWEVD 79
AQ V+
Sbjct: 245 GCAQNGSVE 253
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC I G Q + ++ GFV N+YV +SL+ F C D ++F++M VR+V
Sbjct: 41 LKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDV 100
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ + +
Sbjct: 101 VSWTGVISGYVR 112
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G L+ +S F + V ++L+ KCG ++F+++ +++
Sbjct: 139 LVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDI 198
Query: 63 VSWTAIIAAFAQ 74
VSWT+II+ Q
Sbjct: 199 VSWTSIISGLVQ 210
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R+++ G + +R G + + +VGS LI GKCGE ++ +F+ + RNVV W
Sbjct: 231 CAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVW 290
Query: 66 TAIIAAFAQ 74
TA++ A+ Q
Sbjct: 291 TALMTAYLQ 299
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+SL+ KCG+ +F+ MP+RNVVSW ++A +
Sbjct: 54 NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G Q ++ G +V+VG+++I KC + K F +MP+RNV
Sbjct: 255 LTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNV 314
Query: 63 VSWTAIIAAFAQE 75
VSWT II+ F Q+
Sbjct: 315 VSWTTIISGFVQK 327
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GTQ + G A V VGSSL++ KCG + +K+FE++ +++SWTA+I ++AQ
Sbjct: 669 GTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQ 728
Query: 75 E 75
Sbjct: 729 H 729
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G C ++ G ++ VGSSL + KCG + Y +FE+MP ++ VSW ++I F++
Sbjct: 467 GRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSE 526
Query: 75 E 75
Sbjct: 527 H 527
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + ++ G + A+R+ V VG +L++ KCG + ++F+ +P ++
Sbjct: 556 LTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQ 615
Query: 63 VSWTAIIAAFAQ 74
S +++++ +AQ
Sbjct: 616 FSCSSLVSGYAQ 627
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
LA+++GF +N YV + +I K D ++F+ + NVV W AII+ + E
Sbjct: 172 LALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRE 228
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN 61
+T+C I+ Q ++GF + V S+LI+ K G ++F +M +N
Sbjct: 356 LTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKN 415
Query: 62 VVSWTAIIAAFAQ 74
+ W +I+AFAQ
Sbjct: 416 LAMWAVMISAFAQ 428
>gi|449464614|ref|XP_004150024.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
mitochondrial-like [Cucumis sativus]
Length = 647
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LA++ GF +V+VG++L++ + +D K+F++MP R+ VSW+A+I +AQ
Sbjct: 190 GWQLHTLALKCGFKGDVFVGNALVTMYWRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQ 249
Query: 75 E 75
E
Sbjct: 250 E 250
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 1 MPVTS----CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56
+P+T CG RN+ G Q C+AV++G + VG+ LIS KC D +FE
Sbjct: 274 VPITGALSVCGHERNLELGKQIHCVAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFEL 333
Query: 57 MPVRNVVSWTAIIAA 71
+ RNV+S AI A
Sbjct: 334 INDRNVISLNAISAG 348
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + SGFV+++ V +SL++ K G+ + +F+ + ++VSW I++ F +
Sbjct: 92 GRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEK 151
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G Q V+ G+ NVYVGS+LI KCG D F+ M +N+
Sbjct: 524 INSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNI 583
Query: 63 VSWTAIIAAFAQ 74
V+W +I +AQ
Sbjct: 584 VAWNEMIHGYAQ 595
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R R G L VR GF ++ +VG+SLI KC + + K+F+ +P + VSW +I
Sbjct: 263 RAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILI 322
Query: 70 AAFAQ 74
F Q
Sbjct: 323 TGFGQ 327
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ + G + LAV+ G N++V ++L+ KCG D ++F+ M N
Sbjct: 147 LSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNE 206
Query: 63 VSWTAIIAAFAQEWEVD 79
VS+TA++ Q VD
Sbjct: 207 VSFTAMMGGLVQAGSVD 223
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + GTQ +VR +++V S L+ KCG+ +F +M R+V
Sbjct: 423 LSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDV 482
Query: 63 VSWTAIIAAFA 73
V W ++I+ A
Sbjct: 483 VCWNSMISGLA 493
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A RS N Y ++ +S + G+ + ++MP RNVVSW +IAA A+
Sbjct: 65 AFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALAR 117
>gi|125599274|gb|EAZ38850.1| hypothetical protein OsJ_23267 [Oryza sativa Japonica Group]
Length = 872
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ G Q C A +SG ++ VG+++IS GKCG +F++MP R++VS
Sbjct: 509 ACGALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVS 568
Query: 65 WTAIIAA 71
W A+I +
Sbjct: 569 WNALITS 575
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G L+++SG ++ VG++L+ F + G +I DV +FE+MP ++V+SWT ++ +
Sbjct: 271 GAAVHALSLKSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYM 330
Query: 74 QEWEVDM 80
+ VDM
Sbjct: 331 EFGLVDM 337
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T + Q Q A++ G + ++ ++LI C KCG + D + +FEK
Sbjct: 402 LNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLLFEKWRHEES 461
Query: 63 --VSWTAIIAAFAQEWEVD 79
++W +++AA ++ E +
Sbjct: 462 FHIAWNSLLAASFRDGEYE 480
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG-----FVANVYVGSSLISFCGKCGENIDVYKMFEKM 57
+T+C N R G+Q LAV+ ++ V ++L+ K G D K+F+ M
Sbjct: 153 LTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNALLGMYVKGGRFDDALKVFDGM 212
Query: 58 PVRNVVSWTAIIAAFAQ 74
R+V SW +++ +
Sbjct: 213 ERRDVSSWNTVLSGLVE 229
>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
Length = 825
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC +++ + G L +SG ++ + ++L+S G CG D ++F+ MP RNV
Sbjct: 108 LTSCETSQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNV 167
Query: 63 VSWTAIIAAFAQ 74
++WTA+I A A+
Sbjct: 168 ITWTAMIGAHAE 179
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V SG N+ +G++L++ KC D +FEKMP RNV+SW ++ A+A+
Sbjct: 329 VESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAK 380
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
+C + G AV+SG +V +GS+L++ G+CG D F+ VR N V
Sbjct: 513 ACVGAEALGKGRLVHSCAVQSGNDTDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHV 572
Query: 64 SWTAIIAAFAQ 74
+W+A+IAAF Q
Sbjct: 573 TWSAMIAAFVQ 583
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VR+ V++G+ LI GKC D ++ FE+M +NV +WTAII A
Sbjct: 27 VRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAH 78
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
A++ + +SL++ G+CGE +F+ + RNV+SWTA++ A++++ DM
Sbjct: 436 ADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDM 487
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 35/77 (45%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + G +V S + ++LI+ G+CG D +F M R++
Sbjct: 208 VQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDI 267
Query: 63 VSWTAIIAAFAQEWEVD 79
++W A+I + Q V+
Sbjct: 268 IAWNALITEYGQHGHVE 284
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C + ++R G + F V +SL++ GKCG ++FE ++
Sbjct: 613 LSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSRRQD 672
Query: 62 VVSWTAIIAAFAQ 74
++ W AII+ +AQ
Sbjct: 673 IICWNAIISGYAQ 685
>gi|125557391|gb|EAZ02927.1| hypothetical protein OsI_25067 [Oryza sativa Indica Group]
Length = 678
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ G Q C A +SG ++ VG+++IS GKCG +F++MP R++VS
Sbjct: 315 ACGALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVS 374
Query: 65 WTAIIAA 71
W A+I +
Sbjct: 375 WNALITS 381
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G L+++SG ++ VG++L+ F + G +I DV +FE+MP ++V+SWT ++ +
Sbjct: 77 GAAVHALSLKSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYM 136
Query: 74 QEWEVDM 80
+ VDM
Sbjct: 137 EFGLVDM 143
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T + Q Q A++ G + ++ ++LI C KCG + D + +FEK
Sbjct: 208 LNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLLFEKWRHEES 267
Query: 63 --VSWTAIIAAFAQEWEVD 79
++W +++AA ++ E +
Sbjct: 268 FHIAWNSLLAASFRDGEYE 286
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ R G Q L RS +V++ S+L+ KC D ++F+ MP RNV
Sbjct: 158 LSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNV 217
Query: 63 VSWTAIIAAFAQ 74
VSW ++I + Q
Sbjct: 218 VSWNSLITCYEQ 229
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +CG+ +++ G Q ++ GF ++V+VG+SL+ K G D K+FE+
Sbjct: 392 LNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 451
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I +AQ
Sbjct: 452 MAARDNVSWNAMIVGYAQ 469
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 37/67 (55%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S N+ G ++S ++ ++L+S + G D ++F+++P+RN S+ A
Sbjct: 29 SAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNA 88
Query: 68 IIAAFAQ 74
+++A+A+
Sbjct: 89 LLSAYAR 95
Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 3 VTSCGSTRNIRGGTQY-----QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57
+++C R G Q +C +R V N ++L+ KCG + +F+ M
Sbjct: 259 MSACAGLAADREGRQVHAHMVKCDRLRDDMVLN----NALVDMYAKCGRTWEARCIFDSM 314
Query: 58 PVRNVVSWTAIIAAFAQEWEVD 79
P R++VS T+I+ +A+ V+
Sbjct: 315 PSRSIVSETSILTGYAKSANVE 336
>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L+++ GF NV+VG++LI KC D +++F+ M +NVV+WTA++ A+AQ
Sbjct: 178 GAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTWTAMVTAYAQ 237
Query: 75 EWEVD 79
+ D
Sbjct: 238 NEQPD 242
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C + G Q +R GF +NV++ S+++ KC E +++F +MP RN
Sbjct: 76 VSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYAKCSEIQSAHEVFNEMPERND 135
Query: 63 VSWTAIIAAF 72
V+W ++I +
Sbjct: 136 VTWNSLIFGY 145
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+ I G + L V++G+ ++VYV + L+S +CG D ++F M +VVSW
Sbjct: 373 GAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYARCGAIDDSKRVFWLMEDHDVVSWN 432
Query: 67 AIIAAFAQE 75
A++ A
Sbjct: 433 ALLTGCAHH 441
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q C +R G N+Y+ ++L++ KC N+ D K+ + + + +SW A+IA ++
Sbjct: 281 QVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSN 339
>gi|115470801|ref|NP_001058999.1| Os07g0172600 [Oryza sativa Japonica Group]
gi|34394447|dbj|BAC83621.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113610535|dbj|BAF20913.1| Os07g0172600 [Oryza sativa Japonica Group]
Length = 872
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ G Q C A +SG ++ VG+++IS GKCG +F++MP R++VS
Sbjct: 509 ACGALGFAEFGKQMHCFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVS 568
Query: 65 WTAIIAA 71
W A+I +
Sbjct: 569 WNALITS 575
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G L+++SG ++ VG++L+ F + G +I DV +FE+MP ++V+SWT ++ +
Sbjct: 271 GAAVHALSLKSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYM 330
Query: 74 QEWEVDM 80
+ VDM
Sbjct: 331 EFGLVDM 337
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C T + Q Q A++ G + ++ ++LI C KCG + D + +FEK
Sbjct: 402 LNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLLFEKWRHEES 461
Query: 63 --VSWTAIIAAFAQEWEVD 79
++W +++AA ++ E +
Sbjct: 462 FHIAWNSLLAASFRDGEYE 480
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG-----FVANVYVGSSLISFCGKCGENIDVYKMFEKM 57
+T+C N R G+Q LAV+ ++ V ++L+ K G D K+F+ M
Sbjct: 153 LTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNALLGMYVKGGRFDDALKVFDGM 212
Query: 58 PVRNVVSWTAIIAAFAQ 74
R+V SW +++ +
Sbjct: 213 ERRDVSSWNTVLSGLVE 229
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G Q L +S +++VY+GS+L+ KCG D ++F++M RNV
Sbjct: 159 LSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNV 218
Query: 63 VSWTAIIAAFAQ 74
VSW ++I + Q
Sbjct: 219 VSWNSLITCYEQ 230
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SGF V++ + LI KCG D ++F+KMP RNV +W +++ +
Sbjct: 47 IKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTK 98
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV------ANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +C ++ G Q ++ GF +++VG+SLI KCG + Y +F K
Sbjct: 393 LKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I FAQ
Sbjct: 453 MMERDCVSWNAMIIGFAQ 470
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
+ NV +S++S MF KM RNVVSW A+IA + Q E
Sbjct: 317 IRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGE 366
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C S I+ G + V+ + N + + ++ + KC + +F+ MP+RN
Sbjct: 260 ISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319
Query: 62 VVSWTAIIAAFA 73
V++ T++++ +A
Sbjct: 320 VIAETSMVSGYA 331
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S G Q ++RSG V +V+VG++++ KCG+ + K+F++M ++VVS
Sbjct: 373 ACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVS 432
Query: 65 WTAIIAAFAQ 74
W A++ ++Q
Sbjct: 433 WNAMVTGYSQ 442
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM---PVRNVVSWTAIIAAFAQEWEVD 79
RSGF +NV+V ++++S GKCG + MF+ + ++++VSW ++++A+ W D
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM--WASD 343
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANV--YVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ +C +R G Q +R+ F +V +V + LI K G+ +F+ MP R
Sbjct: 620 LVACARLAALRFGRQVHAYVLRN-FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR 678
Query: 61 NVVSWTAIIAAFA 73
N VSWT+++ +
Sbjct: 679 NAVSWTSLMTGYG 691
>gi|255539304|ref|XP_002510717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551418|gb|EEF52904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 742
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++G + V VG++LI+ KCG+ +F+ MPVRN++SWT++I AF+Q
Sbjct: 376 GRQLHALTTKTGMGSIVTVGNALITMYSKCGDTQKADCVFKMMPVRNIISWTSMITAFSQ 435
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G Q A + GF ++V V +SL++ +CG+ + K F+ + ++N+
Sbjct: 496 ISACADLAMLKLGNQIVAQAEKLGFGSDVSVANSLVTMYSRCGQIEEARKAFDLVSMKNL 555
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA +AQ
Sbjct: 556 VSWNSMIAGYAQ 567
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S ++ G +R + + YVG+ L+ KCG ++F + N
Sbjct: 263 LSACTSIHDLEWGAHLHARIIRKEIILDDYVGNGLVYMYAKCGHLKFARRVFNSLTEHNA 322
Query: 63 VSWTAIIAAFAQ 74
VSWT++I A+
Sbjct: 323 VSWTSLINGVAR 334
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L +R GF + YV +SLI+ CG +D F++MPV+NVVSW +I FA
Sbjct: 113 GAQLHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVMITGFAG 172
Query: 75 EWEVD 79
E++
Sbjct: 173 RGEIE 177
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRNVVSWTAIIAAFA 73
++G V ++ VG+SLI K G K+F M RN+VSWT+II+ FA
Sbjct: 254 KNGLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGMLNRRNLVSWTSIISGFA 304
>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g04780-like [Glycine max]
Length = 632
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK-MPVRN 61
V++C + G Q ++ +SGF +N+YV SSLI KCG + Y +FE + VR+
Sbjct: 259 VSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVEVRS 318
Query: 62 VVSWTAIIAAFAQ 74
+V W A+I+ FA+
Sbjct: 319 IVLWNAMISGFAR 331
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q ++++ +N +V ++L+ KC D +MFE MP +N V+W++++A + Q
Sbjct: 172 QLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQ 229
>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g18840-like [Cucumis
sativus]
Length = 1096
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
++++ G ++SGF +++ + LI+F K G D K+F++MP RNV SW AII
Sbjct: 425 KHLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAII 484
Query: 70 AAFAQ 74
AA+ +
Sbjct: 485 AAYVK 489
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G +AVRS AN++V S+L+ GKCG D ++F + P RN+
Sbjct: 328 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 387
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +A
Sbjct: 388 VTWNAMIGGYAH 399
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q+ V+ GF +V V +S++ F GKC +F+ M VRN VS
Sbjct: 229 ACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVS 288
Query: 65 WTAIIAAFAQ 74
W +++AA+AQ
Sbjct: 289 WCSMVAAYAQ 298
>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial; Flags: Precursor
gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 45/73 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ ++ G+Q+ + ++ N++VG++L+ KCG D ++FE+M R+
Sbjct: 435 LSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDN 494
Query: 63 VSWTAIIAAFAQE 75
V+W II ++ Q+
Sbjct: 495 VTWNTIIGSYVQD 507
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q CL+V+ G +++ GSSLI KCG D K+F +P +V
Sbjct: 536 LKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV 595
Query: 63 VSWTAIIAAFAQ 74
VS A+IA ++Q
Sbjct: 596 VSMNALIAGYSQ 607
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ G N+ G A++ G +N+YVGSSL+S KC + K+FE + +N
Sbjct: 334 LSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKND 393
Query: 63 VSWTAIIAAFAQEWE 77
V W A+I +A E
Sbjct: 394 VFWNAMIRGYAHNGE 408
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C N+ G Q C ++ G N Y G +L+ KC D ++FE + N
Sbjct: 167 LSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNT 226
Query: 63 VSWTAIIAAFAQ 74
V WT + + + +
Sbjct: 227 VCWTCLFSGYVK 238
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG N + G Q C V+ G+ +NV + S+++ F +CG MF+KM R+V
Sbjct: 189 LKSCGEQCNTKLGRQVHCCVVKGGW-SNVIMDSAVVHFYAQCGHIASASTMFDKMASRDV 247
Query: 63 VSWTAIIAAFAQEWEVD 79
+SWT +I A+ Q D
Sbjct: 248 ISWTTMITAYVQHGRGD 264
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + R G Q V+ + +++VGS+L++ + GE D +F+KM RN
Sbjct: 289 LKACSDEKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNT 348
Query: 63 VSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 349 ITWTSMISGYAQ 360
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + + ++ NV+VGSSLI +CG D ++F+ MP N+
Sbjct: 491 LKACAKLEALQDGRRIHGVVNKTPAFLNVFVGSSLIDMYMRCGNVDDARRVFDAMPEHNL 550
Query: 63 VSWTAIIAAFAQ 74
V+W II FAQ
Sbjct: 551 VTWKVIITGFAQ 562
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS +++R G + +++ N+ +GS+L+ KCGE ++ + MP R+
Sbjct: 390 LSACGSIQSLRLGKELHAQIIKNSIQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDA 449
Query: 63 VSWTAIIAAF 72
+SWTA+I+ +
Sbjct: 450 ISWTAMISGY 459
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCGS ++R + ++VRS ++V ++LI+ + E D K+F++MP ++V
Sbjct: 91 LRSCGSVDDVR---RVHAISVRSPDGPGMFVANNLINAYARFHEISDARKVFDEMPDKSV 147
Query: 63 VSWTAIIAAFAQ 74
VSWTAII + +
Sbjct: 148 VSWTAIINGYQK 159
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ST +IR Q C +S F + +G+SLI KCG D K+F+ + R+++S
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533
Query: 65 WTAIIAAFA 73
W AII+ +A
Sbjct: 534 WNAIISGYA 542
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q A++ G ++++VG++L+ F KC + K+F + N
Sbjct: 371 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 430
Query: 63 VSWTAIIAAFAQ 74
VSW I+ F+Q
Sbjct: 431 VSWNTIVVGFSQ 442
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVA--NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C + + RGG VR G V +++ + L++ GK G ++F++MP RN+V
Sbjct: 69 CIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMV 128
Query: 64 SWTAIIAAFAQ 74
S+ ++ A AQ
Sbjct: 129 SFVTLVQAHAQ 139
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + G + N+ G + A++ G +N+++G+SLI GKC + FE MP +++
Sbjct: 359 IAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDL 418
Query: 63 VSWTAIIAAFAQ 74
+SWT IIA +AQ
Sbjct: 419 ISWTTIIAGYAQ 430
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
C S + + G Q +++ ++ +V++ + + GKCG D K+F+KM R + +
Sbjct: 56 CASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFT 115
Query: 65 WTAIIAA 71
W A+I A
Sbjct: 116 WNAMIGA 122
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I+ G + ++S +VYV ++LI+ CG+ D ++F+ M ++
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDC 317
Query: 63 VSWTAIIAAFAQ 74
VSW +++ Q
Sbjct: 318 VSWNTLLSGMVQ 329
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK--MPVR 60
+ +CG+ + R G + +AV+ G+ V+V ++LI+ KCG+ +F+ M
Sbjct: 155 LKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKD 214
Query: 61 NVVSWTAIIAAFAQEWE 77
+ VSW +II+A E E
Sbjct: 215 DPVSWNSIISAHVGEGE 231
Score = 34.7 bits (78), Expect = 7.5, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ + +++ G + +R GF + +SL+ +CG + +F + R+++
Sbjct: 562 AAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLIL 621
Query: 65 WTAIIAA 71
WT++I A
Sbjct: 622 WTSMINA 628
>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Vitis vinifera]
Length = 882
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A++SGF++++ VG+S+I+ KC D K+F MP ++VSW
Sbjct: 518 CGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSW 577
Query: 66 TAIIAA 71
+IA
Sbjct: 578 NGLIAG 583
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C ++ G Q + ++ GF+ +V ++L+ GKCG V ++F++MP R++
Sbjct: 178 LTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDI 237
Query: 63 VSWTAIIAAFAQE 75
SW +I++ +E
Sbjct: 238 ASWNTVISSVVKE 250
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + ++ GF +N+ V ++LI F KCG V +FEKM VR+V++WT +I A+ +
Sbjct: 291 GREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYME 350
>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A++SGF++++ VG+S+I+ KC D K+F MP ++VSW
Sbjct: 536 CGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSW 595
Query: 66 TAIIAA 71
+IA
Sbjct: 596 NGLIAG 601
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C ++ G Q + ++ GF+ +V ++L+ GKCG V ++F++MP R++
Sbjct: 196 LTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDI 255
Query: 63 VSWTAIIAAFAQE 75
SW +I++ +E
Sbjct: 256 ASWNTVISSVVKE 268
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + ++ GF +N+ V ++LI F KCG V +FEKM VR+V++WT +I A+ +
Sbjct: 309 GREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYME 368
>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Cucumis sativus]
Length = 1096
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
++++ G ++SGF +++ + LI+F K G D K+F++MP RNV SW AII
Sbjct: 425 KHLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAII 484
Query: 70 AAFAQ 74
AA+ +
Sbjct: 485 AAYVK 489
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS ++ G Q+ R VYVG+++I KCG + K+F++MP R+V
Sbjct: 157 LKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDV 216
Query: 63 VSWTAIIAAFAQ 74
+SWT +IAA+A+
Sbjct: 217 ISWTELIAAYAR 228
>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
Length = 740
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 2 PVTSCGSTRNIRG---GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
P C S I G G Q CLA+R GF ++++ +SL+ K + +F +MP
Sbjct: 218 PREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMP 277
Query: 59 VRNVVSWTAIIAAFAQEWEVDMCYTFI 85
NVVSW +I F QE+ D F+
Sbjct: 278 EVNVVSWNIMIVGFGQEYRSDKSVEFL 304
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRNVVSWTAIIAAFA 73
G + +AV++G N++VG++L+S KCG +D ++FE + N VS+TA+I A
Sbjct: 123 GMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLA 182
Query: 74 QEWEV 78
+E +V
Sbjct: 183 RENKV 187
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q+ L V+SG+V++ +V ++L KCGE + F+ + +N
Sbjct: 492 LSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNT 551
Query: 63 VSWTAIIAAFAQEWEVD 79
V W +I + D
Sbjct: 552 VIWNEMIHGYGHNGRGD 568
>gi|297824663|ref|XP_002880214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326053|gb|EFH56473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 585
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + N+ G Q L V+ G +N ++ +SL+ F GKCG + ++FE + VR++V W
Sbjct: 152 CTDSTNVEAGNQLHSLIVKQGLESNCFLSTSLVDFYGKCGLIGEARQVFEAVLVRDLVLW 211
Query: 66 TAIIAAFAQEWEVDMCYTFI 85
A+++++ +D + +
Sbjct: 212 NALVSSYVLNGMIDEAFGLL 231
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG I+ G Q + + ++ ++ V ++L++ K D +K FE M VRN+
Sbjct: 252 LSACG----IKQGKQIHAIVFKLSYLFDIPVATALVNMYAKSNHMSDAHKCFESMVVRNI 307
Query: 63 VSWTAIIAAFAQEWE 77
VSW A+I F Q E
Sbjct: 308 VSWNAMIVGFGQNGE 322
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ R+ GG Q + GF + +VG++LI KC + K+F++M RN V+W
Sbjct: 185 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTW 244
Query: 66 TAIIAAFAQ 74
+II+A AQ
Sbjct: 245 NSIISAEAQ 253
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C + RN G Q +R+ N+ V + L+ +CG ++F +M RN
Sbjct: 285 LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 344
Query: 63 VSWTAIIAAFAQEWE 77
SW ++I + Q E
Sbjct: 345 YSWNSMIEGYQQNGE 359
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV---YKMFEKMPV 59
+ C + + + G + +G+ + Y+ + ++ + G D+ K+FE+MP
Sbjct: 78 IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPE 137
Query: 60 RNVVSWTAIIAAFAQ 74
RN+ +W +I A+A+
Sbjct: 138 RNLTAWNTMILAYAR 152
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + G C ++R G +VYVGS+LI KCG F+ +P +N+V
Sbjct: 395 ACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVC 454
Query: 65 WTAIIAAFA 73
W A+IA +A
Sbjct: 455 WNAVIAGYA 463
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C ++ Q +A SGF ++ +V SSL+ KC + D +++F++M +V
Sbjct: 121 VKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDV 180
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW+A++AA+A++ VD
Sbjct: 181 VSWSALVAAYARQGCVD 197
>gi|302816601|ref|XP_002989979.1| hypothetical protein SELMODRAFT_130617 [Selaginella moellendorffii]
gi|300142290|gb|EFJ08992.1| hypothetical protein SELMODRAFT_130617 [Selaginella moellendorffii]
Length = 395
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S R G V+ G V+ VG++LI+ GKCG ++ M EKMP ++
Sbjct: 148 LQACSSLVAPREGKLIHASIVQGGVVSETSVGTALINMYGKCGLLMEARTMLEKMPRHDI 207
Query: 63 VSWTAIIAAFAQ 74
SWTA I AFAQ
Sbjct: 208 GSWTATIVAFAQ 219
>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q QC +++ F ++ +GS+LI KCG D ++F++M RNV
Sbjct: 279 IGACSVLAAFEAGQQIQCQLMKTKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNV 338
Query: 63 VSWTAIIAAFAQ 74
SWT++I + +
Sbjct: 339 FSWTSMIDGYGK 350
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG ++ G + +R+GF ++ + ++L+ GKCGE +F+ M ++V
Sbjct: 239 IISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDV 298
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
++WTA+I+A+AQ +D + V
Sbjct: 299 MTWTAMISAYAQANCIDYAFQLFV 322
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R G + +V++G V++V+V ++L+ +CG + +F+KM R+V
Sbjct: 116 LKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDV 175
Query: 63 VSWTAIIAAF 72
VSW+ +I A+
Sbjct: 176 VSWSTMIRAY 185
>gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q QC +++ F ++ +GS+LI KCG D ++F++M RNV
Sbjct: 279 IGACSVLAAFEAGQQIQCQLMKTKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNV 338
Query: 63 VSWTAIIAAFAQ 74
SWT++I + +
Sbjct: 339 FSWTSMIDGYGK 350
>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Cucumis sativus]
Length = 603
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C N+R G + G+ N+ V SSLI GKC + + +F M +N+
Sbjct: 132 IKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCKNI 191
Query: 63 VSWTAIIAAFAQ 74
VSWT++IAA+AQ
Sbjct: 192 VSWTSMIAAYAQ 203
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C R IR G + +++ ++ VY+ + LI F KC D +F+ MP RNV
Sbjct: 65 LNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNV 124
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+A++Q
Sbjct: 125 VSWTAMISAYSQ 136
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC + G Q ++ + A+VYVGSSL+ K G+ + +F+ +P R+V
Sbjct: 166 LTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDV 225
Query: 63 VSWTAIIAAFAQ 74
VS TAII+ +AQ
Sbjct: 226 VSCTAIISGYAQ 237
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RS + V + +SLI KCG ++F+ + R V+SW A++ +++
Sbjct: 279 GKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSK 338
Query: 75 EWE 77
E
Sbjct: 339 HGE 341
>gi|302820327|ref|XP_002991831.1| hypothetical protein SELMODRAFT_186416 [Selaginella
moellendorffii]
gi|300140369|gb|EFJ07093.1| hypothetical protein SELMODRAFT_186416 [Selaginella
moellendorffii]
Length = 355
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SCG R++ G + + N Y+ + LI GKCG D +F MP R++
Sbjct: 18 VRSCGINRDLAEGKRIHARILEGSHSKNRYLTNLLIEMYGKCGSLEDAQSLFHNMPERDI 77
Query: 63 VSWTAIIAAFAQEWEVD 79
+SWT+++AA A + VD
Sbjct: 78 ISWTSMMAANATQGNVD 94
>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 774
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 2 PVTSCGSTRNIRG---GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
P C S I G G Q CLA+R GF ++++ +SL+ K + +F +MP
Sbjct: 252 PREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMP 311
Query: 59 VRNVVSWTAIIAAFAQEWEVDMCYTFI 85
NVVSW +I F QE+ D F+
Sbjct: 312 EVNVVSWNIMIVGFGQEYRSDKSVEFL 338
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRNVVSWTAIIAAFA 73
G + +AV++G N++VG++L+S KCG +D ++FE + N VS+TA+I A
Sbjct: 157 GMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLA 216
Query: 74 QEWEV 78
+E +V
Sbjct: 217 RENKV 221
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q+ L V+SG+V++ +V ++L KCGE + F+ + +N
Sbjct: 526 LSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNT 585
Query: 63 VSWTAIIAAFAQEWEVD 79
V W +I + D
Sbjct: 586 VIWNEMIHGYGHNGRGD 602
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
VR G ++ Y+ + L+ +CG+ K+F++M VR+V SW A +
Sbjct: 33 VRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFL 79
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ GG Q L ++ GF +VYV + L++ CG ++ ++F++MPVRN V+
Sbjct: 99 ACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVT 158
Query: 65 WTAIIAAFAQEWEVDMCYTFI 85
W I A+ E+ + + +
Sbjct: 159 WNVFITGLAKWGELHLARSLL 179
>gi|410109973|gb|AFV61066.1| pentatricopeptide repeat-containing protein 81, partial
[Citharexylum montevidense]
Length = 366
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q LAV+SGF N YV S+LI KCG D + FE + V+
Sbjct: 253 SCSDLATLQLGRQIHVLAVKSGFEGNEYVASALIFMYSKCGIIEDAWDSFEDSQKESXVT 312
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 313 WNSIIFAYAQ 322
>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Brachypodium distachyon]
Length = 564
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S N+ G Q L +R F AN+ V +SLI C +D ++F+++P RN+V+
Sbjct: 185 ACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVT 244
Query: 65 WTAIIAAFAQ 74
W +IA ++Q
Sbjct: 245 WNTMIAWYSQ 254
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C ++R G Q A+R + ++ + ++L+ KCG + KMF M ++ +
Sbjct: 281 SACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKL 340
Query: 64 SWTAIIAAFA 73
SWT++I +
Sbjct: 341 SWTSMITGYG 350
>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Cucumis sativus]
Length = 603
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C N+R G + G+ N+ V SSLI GKC + + +F M +N+
Sbjct: 132 IKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCKNI 191
Query: 63 VSWTAIIAAFAQ 74
VSWT++IAA+AQ
Sbjct: 192 VSWTSMIAAYAQ 203
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ R+ GG Q + GF + +VG++LI KC + K+F++M RN V+W
Sbjct: 286 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTW 345
Query: 66 TAIIAAFAQ 74
+II+A AQ
Sbjct: 346 NSIISAEAQ 354
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
V C S + G Q L ++ GFV +V + ++L+ KCG +F+ M +N
Sbjct: 719 VNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKN 778
Query: 62 VVSWTAIIAAFAQ 74
+VSW A+I+ +++
Sbjct: 779 IVSWNAMISGYSK 791
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C + RN G Q +R+ N+ V + L+ +CG ++F +M RN
Sbjct: 486 LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 545
Query: 63 VSWTAIIAAFAQEWE 77
SW ++I + Q E
Sbjct: 546 YSWNSMIEGYQQNGE 560
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G Q Q V++G N++VG +L+ + G D +++ +V
Sbjct: 182 IKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSV 241
Query: 63 VSWTAIIAAFAQ--EWE 77
V+W A+IA + + WE
Sbjct: 242 VTWNAVIAGYVKILSWE 258
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G + VR+ +++ +GS+L+ KCG + +++F + RN VS+ A++A
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451
Query: 71 AFAQE 75
+ QE
Sbjct: 452 GYVQE 456
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV---YKMFEKMPV 59
+ C + + + G + +G+ + Y+ + ++ + G D+ K+FE+MP
Sbjct: 78 IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPE 137
Query: 60 RNVVSWTAIIAAFAQ 74
RN+ +W +I A+A+
Sbjct: 138 RNLTAWNTMILAYAR 152
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C S ++ GG Q + +SG V++++VGS+L+ KCG + +FE + R+
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683
Query: 63 VSWTAIIAAFAQ 74
++W II +AQ
Sbjct: 684 IAWNTIICGYAQ 695
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q A + G + +++VGS+L+ KCGE KMF MP +N V+W ++ +AQ
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291
Query: 75 EWEV 78
+V
Sbjct: 292 RGDV 295
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++N++ G L ++ G+ N ++G L+ KCG ID +F+ + ++V W
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383
Query: 66 TAIIAAFAQE 75
+A+I Q+
Sbjct: 384 SALITCLDQQ 393
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q +++ N +V ++LI KC D F ++ VR++ +
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT 584
Query: 65 WTAIIAAFAQ 74
WT II +AQ
Sbjct: 585 WTVIITNYAQ 594
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S R++ L V+ + ++ SL++ KC + + KMP R+VVSW
Sbjct: 122 CASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSW 181
Query: 66 TAIIAAFAQE-WEVDMCYTF 84
TA+I E + D Y F
Sbjct: 182 TALIQGLVAEGFANDSIYLF 201
>gi|413917687|gb|AFW57619.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 611
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LA++ F N YV + LI+ KCGE + ++F+ P +N V+W +IIAA+A+
Sbjct: 346 GKQIHALAIKRCFGGNTYVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYAR 405
Query: 75 E---WEV 78
WEV
Sbjct: 406 HGHGWEV 412
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R R G Q LAV++G +++V S L+ KCG D ++F + VS
Sbjct: 235 ACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVS 294
Query: 65 WTAIIAAFAQ 74
T I+A FAQ
Sbjct: 295 LTVILAGFAQ 304
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 6 CGSTRNIRGGTQYQCLAV-----------RSGFVANVYVGSSLISFCGKCGENIDVYKMF 54
CG ++R GT + RS V V +SL++ G+CG D ++F
Sbjct: 21 CGRAGDLRLGTSLHAIVAKNPSHFRLCPRRSCLQHVVVVWNSLVAMYGRCGCRGDAVRVF 80
Query: 55 EKMPVRNVVSWTAIIAAFA 73
++M +R+ VSW ++++A A
Sbjct: 81 DEMALRDSVSWNSLLSASA 99
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA G A V VG++LI+ +C ++F+ M RNV++WTA+++ A+
Sbjct: 151 LAASCGLDAEVSVGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMAR 204
>gi|357116436|ref|XP_003559987.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like [Brachypodium distachyon]
Length = 450
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C +T N+ G Q C A+R GF + ++LI KCG +F++M RNV
Sbjct: 207 LTACSATANVAYGLQVHCKALRLGFDYETVLCNALIDMYAKCGRTAGARVLFDRMAGRNV 266
Query: 63 VSWTAIIAAFAQ 74
VSW+++I +++
Sbjct: 267 VSWSSMIDGYSR 278
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C S ++ GG Q + +SG V++++VGS+L+ KCG + +FE + R+
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683
Query: 63 VSWTAIIAAFAQ 74
++W II +AQ
Sbjct: 684 IAWNTIICGYAQ 695
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q A + G + +++VGS+L+ KCGE KMF MP +N V+W ++ +AQ
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291
Query: 75 EWEV 78
+V
Sbjct: 292 RGDV 295
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++N++ G L ++ G+ N ++G L+ KCG ID +F+ + ++V W
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383
Query: 66 TAIIAAFAQE 75
+A+I Q+
Sbjct: 384 SALITCLDQQ 393
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q +++ N +V ++LI KC D F ++ VR++ +
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT 584
Query: 65 WTAIIAAFAQ 74
WT II +AQ
Sbjct: 585 WTVIITNYAQ 594
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S R++ L V+ + ++ SL++ KC + + KMP R+VVSW
Sbjct: 122 CASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSW 181
Query: 66 TAIIAAFAQE-WEVDMCYTF 84
TA+I E + D Y F
Sbjct: 182 TALIQGLVAEGFANDSIYLF 201
>gi|224102071|ref|XP_002312534.1| predicted protein [Populus trichocarpa]
gi|222852354|gb|EEE89901.1| predicted protein [Populus trichocarpa]
Length = 285
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + G LAV++ +V+VGS+ + GKCG + D + F +MP RN+
Sbjct: 195 ISVCAGLSGLELGRSVHALAVKACVEGDVFVGSAPVDMYGKCGSSEDCEQDFHEMPERNL 254
Query: 63 VSWTAIIAAFAQEWEV 78
VSW A+I+ +A +V
Sbjct: 255 VSWNAMISGYAYHGDV 270
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
Q +AV+ G + + +VG + K G + ++F++M RN+ +W A
Sbjct: 28 QIHAVAVKLGQINDKFVGCTAFDMYSKTGLKFEAKRLFDEMAERNIATWNA 78
>gi|293331543|ref|NP_001169748.1| uncharacterized protein LOC100383629 [Zea mays]
gi|224031397|gb|ACN34774.1| unknown [Zea mays]
Length = 546
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LA++ F N YV + LI+ KCGE + ++F+ P +N V+W +IIAA+A+
Sbjct: 281 GKQIHALAIKRCFGGNTYVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYAR 340
Query: 75 E---WEV 78
WEV
Sbjct: 341 HGHGWEV 347
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R R G Q LAV++G +++V S L+ KCG D ++F + VS
Sbjct: 170 ACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVS 229
Query: 65 WTAIIAAFAQ 74
T I+A FAQ
Sbjct: 230 LTVILAGFAQ 239
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA G A V VG++LI+ +C ++F+ M RNV++WTA+++ A+
Sbjct: 86 LAASCGLDAEVSVGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMAR 139
>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g05340-like [Cucumis sativus]
Length = 838
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+ ++R G Q V+ F+ N +V + LI+ KCG + K+F++M RN V+W
Sbjct: 301 GADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWN 360
Query: 67 AIIAAFAQ 74
++IAAFA+
Sbjct: 361 SMIAAFAR 368
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVG----SSLISFCGKCGENIDVYKMFEKMPVRN 61
CG N+ G+ ++S ++N Y G +SLIS +CG+ D K+F++M R+
Sbjct: 55 CGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRD 114
Query: 62 VVSWTAIIAAFAQ 74
+SW A+I F +
Sbjct: 115 TISWNALIGGFVR 127
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++ G Q L ++ G +++ +GS+L+ K G + +K+FE ++
Sbjct: 196 LTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDM 255
Query: 63 VSWTAIIAAFAQ 74
VS T I+A F
Sbjct: 256 VSLTVILAGFTH 267
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ +T + G Q L + GF AN++VG++L+ KC + ++F++MP RN+
Sbjct: 252 LSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNL 311
Query: 63 VSWTAIIAAF 72
VSW ++I F
Sbjct: 312 VSWNSMIVGF 321
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
S S + GT ++ G+V N+ + SLI+ KCG +D Y++FE + NV+S
Sbjct: 457 SSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVIS 516
Query: 65 WTAIIAAF 72
WTA+I+A+
Sbjct: 517 WTAMISAY 524
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q + V+ G V YV +SL+ KC + K+F+ + R+V
Sbjct: 354 LSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDV 413
Query: 63 VSWTAIIAAFAQ 74
V+W ++ F Q
Sbjct: 414 VTWNVLVMGFVQ 425
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + +R G Q L +RSGF ++ V +++I+ KCG D K+F+ MP +
Sbjct: 285 LSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDT 344
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W +IA + Q D
Sbjct: 345 VTWNGLIAGYVQNGFTD 361
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G + C VR+ F+++ +V S+LI KCG+ +F+ M +N
Sbjct: 588 LSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNE 647
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSW +IIAA+ C
Sbjct: 648 VSWNSIIAAYGNHGRPREC 666
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +++ G + C ++ G VGSS+ K G Y+ F +MPV++
Sbjct: 487 LPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDS 546
Query: 63 VSWTAIIAAFAQEWEVDM 80
V W +I +F+Q + ++
Sbjct: 547 VCWNLMIVSFSQNGKPEL 564
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG N+ LA GF ++++GSSLI G D +F+++PVR+
Sbjct: 184 IKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDC 243
Query: 63 VSWTAIIAAFAQEWEVD 79
+ W ++ + + + +
Sbjct: 244 ILWNVMLNGYVKNGDFN 260
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + G C ++R G +VYVGS+LI KCG F+ +P +N+V
Sbjct: 395 ACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVC 454
Query: 65 WTAIIAAFA 73
W A+IA +A
Sbjct: 455 WNAVIAGYA 463
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C ++ Q +A SGF ++ +V SSL+ KC + D +++F++M +V
Sbjct: 121 VKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDV 180
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW+A++AA+A++ VD
Sbjct: 181 VSWSALVAAYARQGCVD 197
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG N GT +V++G V +V+VGS+L+ K GE K+F++MP RN
Sbjct: 123 LKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNA 182
Query: 63 VSWTAIIAAFAQ 74
V+WTA+I +
Sbjct: 183 VTWTAVITGLVR 194
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + ++ G Q + GFV + V +S+++ KCGE V K+F M R++
Sbjct: 325 ISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDI 384
Query: 63 VSWTAIIAAFAQ 74
++W+ IIAA++Q
Sbjct: 385 ITWSTIIAAYSQ 396
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G ++ GF N +V +SL + KCG+ F KM +VVSWT I+ A+ Q
Sbjct: 236 GRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQ 295
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CGS + G Q + G V S+LI KCG + K+F ++
Sbjct: 426 LSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDI 485
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I+ +A+
Sbjct: 486 ISWTAMISGYAE 497
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L V+SGF N+ + ++LIS KCG ++F M RNV++WT+II+ FA+
Sbjct: 467 GEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAK 526
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RSG ++V+VG +L+ K + K+F M NV+SWTA+I+ + Q
Sbjct: 267 GKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQ 326
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR 60
+ +C + N+ G + SG + + +SLI+ KCG+ + +F M R
Sbjct: 46 LKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105
Query: 61 NVVSWTAIIAAFA 73
++VSW+AII+ FA
Sbjct: 106 DLVSWSAIISCFA 118
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNV 62
SC + G +++G F ++V VG +LI K G +I +M F+KM +N+
Sbjct: 154 SCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNL 213
Query: 63 VSWTAIIAAFAQ 74
V+WT +I ++Q
Sbjct: 214 VTWTLMITRYSQ 225
>gi|222618959|gb|EEE55091.1| hypothetical protein OsJ_02835 [Oryza sativa Japonica Group]
Length = 575
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
F +V+VGSS++ KCG D ++F++MP RNVVSW+A+I +A
Sbjct: 134 FAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYA 180
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + G Q ++++ A+ +VGSSL+S KCG Y++F + P RN+ W
Sbjct: 214 CAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIW 273
Query: 66 TAIIAAFAQ 74
A + A AQ
Sbjct: 274 NAGLNASAQ 282
>gi|15239977|ref|NP_201451.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171135|sp|Q9FJY9.1|PP448_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g66500, mitochondrial; Flags: Precursor
gi|10177531|dbj|BAB10926.1| unnamed protein product [Arabidopsis thaliana]
gi|332010838|gb|AED98221.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 532
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C ++ G Q C+A+R+GFV++ + + L+ GKCG+ + +F +P ++V
Sbjct: 288 LAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSV 347
Query: 63 VSWTAIIAAFA 73
VSWT++I A+A
Sbjct: 348 VSWTSMIDAYA 358
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ G ++LI K G +D ++FE + +++VSW A+++ F +
Sbjct: 103 GRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLR 162
>gi|357117671|ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Brachypodium distachyon]
Length = 602
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ G+ R R G++ V G +V V SS + KCG ++ ++F++M VRN
Sbjct: 248 MTALGNLRRARQGSEAHAQVVTRGLCGSVIVESSTLDMYAKCGMMLEARRVFDEMQVRNA 307
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW+A++ + Q E +
Sbjct: 308 VSWSALLGGYCQNAEYE 324
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G + C +R+G +V V S+L+ KCG ++FE VRN ++
Sbjct: 349 ACAGLSSVKPGKEIHCRFLRNGGWRDVVVESALVDLYAKCGAVDYACRVFEASSVRNTIT 408
Query: 65 WTAIIAAFAQ 74
W A+I FAQ
Sbjct: 409 WNAMIGGFAQ 418
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + + G Q C V+SG +Y GSSLI KCG +F MP R+V
Sbjct: 558 LSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSV 617
Query: 63 VSWTAIIAAFAQ 74
VS AIIA +AQ
Sbjct: 618 VSMNAIIAGYAQ 629
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC +I G Q C ++ GF N + SLI KCG +D K+F+ + +
Sbjct: 189 LSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDT 248
Query: 63 VSWTAIIAAFAQ 74
VSWTA+IA + Q
Sbjct: 249 VSWTAMIAGYVQ 260
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ S + G A++ G +NVYVGSSLI+ KC + K+F+ + RN+
Sbjct: 356 LSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNL 415
Query: 63 VSWTAIIAAFAQ 74
V W A++ +AQ
Sbjct: 416 VLWNAMLGGYAQ 427
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q ++ F N++V ++L+ KCG + + FE + R+
Sbjct: 457 LSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDN 516
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
VSW AII + QE + D +
Sbjct: 517 VSWNAIIVGYVQEEDEDEAF 536
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN-VV 63
+C ++ G L G ++ GS+++ KCG+ ++FE+M +N V+
Sbjct: 763 ACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVI 822
Query: 64 SWTAIIAAFAQ 74
SW ++I FA+
Sbjct: 823 SWNSMIVGFAK 833
>gi|359490688|ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPVRNVVSWTAIIAA 71
G Q +R G +V VG SL+ KC G D K+FE+MP NV+SWTAII A
Sbjct: 299 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFERMPEHNVMSWTAIITA 358
Query: 72 FAQEWEVD 79
+ Q E D
Sbjct: 359 YVQSGECD 366
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVR 60
+ +C + + G V++G++ A+V VG LI F G+ YK+F+KMP R
Sbjct: 184 IRACSNANHAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPER 243
Query: 61 NVVSWTAIIAAFAQ 74
N+V+WT +I FAQ
Sbjct: 244 NLVTWTLMITRFAQ 257
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRN 61
+ SC RN + G ++SG + V ++LIS KCG+ +FE M R+
Sbjct: 82 LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRD 141
Query: 62 VVSWTAIIAAFA-QEWEVDMCYTFI 85
+VSW+A+++ FA E+ +TF+
Sbjct: 142 LVSWSAMVSCFANNSMELQAIWTFL 166
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G Q AV+ G + VG+SLIS + G D K F+ + +N+
Sbjct: 392 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 451
Query: 63 VSWTAIIAAFAQ 74
VS+ AI+ +A+
Sbjct: 452 VSYNAIVDGYAK 463
>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 938
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 3 VTSCG-STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+C S+ + G Q+ A++ G + +V+VG+S + F G + KMF +MP RN
Sbjct: 65 VTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRN 124
Query: 62 VVSWTAIIAAFA 73
VVSWT+++ +++
Sbjct: 125 VVSWTSLMVSYS 136
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CGS ++ G LAV+ G +N+ + ++L+S G + D +F +MP R+++SW
Sbjct: 271 CGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISW 330
Query: 66 TAIIAAFAQE 75
+++A + Q+
Sbjct: 331 NSMLACYVQD 340
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
G + +G++LI+F GKC + + K+F++MP + V+W A+I FA E++
Sbjct: 392 GLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELN 445
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SCG +I G Q A++ G V +SLI G CG+ + +F +M R+
Sbjct: 167 ISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDT 226
Query: 63 VSWTAIIAAFAQ 74
+SW +II+A AQ
Sbjct: 227 ISWNSIISANAQ 238
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
I+ G V +GF + +V SSLI+ KCG+ +F+++ + W AIIAA
Sbjct: 481 IKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAA 540
Query: 72 FAQ 74
A+
Sbjct: 541 NAR 543
>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ R ++ G + + +G +NV V SSL+ GK G + ++F MP +N+
Sbjct: 271 LTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNI 330
Query: 63 VSWTAIIAAFAQEWE 77
VSW+A++ + Q E
Sbjct: 331 VSWSALLGGYCQNGE 345
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G + VR G NV V S+LI GK G +++ KM VRN+
Sbjct: 368 LKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNM 427
Query: 63 VSWTAIIAAFAQ 74
++W A+++A AQ
Sbjct: 428 ITWNAMLSALAQ 439
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +R G + + + GF N + S+L G E +D ++F++MP +V
Sbjct: 169 VKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDV 228
Query: 63 VSWTAIIAAFAQ 74
+ WTA+++AF++
Sbjct: 229 ICWTAVLSAFSK 240
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C + G Q+ V+SG + VG+SL+S K G ++ + ++F+ M V++
Sbjct: 67 LQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKD 126
Query: 62 VVSWTAIIAAFAQEWE 77
+SWT++++ + E
Sbjct: 127 AISWTSMMSGYVASKE 142
>gi|255546351|ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546691|gb|EEF48189.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 352
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G Q Q +A+R G +N Y S ISF K G+ + YKMFE+ P R + SW AII
Sbjct: 138 SIEIGKQLQSVAIRLGLESNEYCESGFISFYSKSGDIKNAYKMFEENPERKLGSWNAIIG 197
Query: 71 AFAQ 74
+Q
Sbjct: 198 GLSQ 201
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA--NVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+++CGS ++ Q + N+ V +SLI GKCG ++F M +
Sbjct: 231 ISACGSLGDLNLAIQLHKYVFHANVFGRTNILVMNSLIDMYGKCGRMDLARRVFCTMGEK 290
Query: 61 NVVSWTAIIAAFAQEWEVD 79
NV SWT++I + V+
Sbjct: 291 NVSSWTSMIVGYGMHGHVN 309
>gi|302144057|emb|CBI23162.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ GG Q L ++ GF +VYV + L++ CG ++ ++F++MPVRN V+
Sbjct: 99 ACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVT 158
Query: 65 WTAIIAAFAQEWEVDMCYTFI 85
W I A+ E+ + + +
Sbjct: 159 WNVFITGLAKWGELHLACSLL 179
>gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ GG Q L ++ GF +VYV + L++ CG ++ ++F++MPVRN V+
Sbjct: 99 ACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVT 158
Query: 65 WTAIIAAFAQEWEVDMCYTFI 85
W I A+ E+ + + +
Sbjct: 159 WNVFITGLAKWGELHLACSLL 179
>gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera]
Length = 610
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ GG Q L ++ GF +VYV + L++ CG ++ ++F++MPVRN V+
Sbjct: 99 ACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVT 158
Query: 65 WTAIIAAFAQEWEVDMCYTFI 85
W I A+ E+ + + +
Sbjct: 159 WNVFITGLAKWGELHLACSLL 179
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + R R G + +++ ++ +V++ + LI KC D + +F++MP RNV
Sbjct: 250 LNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNV 309
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+A++Q
Sbjct: 310 VSWTAMISAYSQ 321
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S+ G Q L ++ + +V+VGSSL+ K G+ + +FE +P R+V
Sbjct: 372 LTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDV 431
Query: 63 VSWTAIIAAFAQ 74
VS TAII+ +AQ
Sbjct: 432 VSCTAIISGYAQ 443
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RS + V + +SLI KCG ++F+ M R V+SW A++ +++
Sbjct: 485 GKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSK 544
Query: 75 EWE 77
E
Sbjct: 545 HGE 547
>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 833
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+ ++R G Q V+ F+ N +V + LI+ KCG + K+F++M RN V+W
Sbjct: 296 GADTSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWN 355
Query: 67 AIIAAFAQ 74
++IAAFA+
Sbjct: 356 SMIAAFAR 363
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVG----SSLISFCGKCGENIDVYKMFEKMPVRN 61
CG N+ G+ ++S ++N Y G +SLIS +CG+ D K+F++M R+
Sbjct: 55 CGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMVTRD 114
Query: 62 VVSWTAIIAAFAQ 74
+SW A+I F +
Sbjct: 115 TISWNALIGGFVR 127
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++ G Q L ++ G +++ +GS+L+ K G + +K+FE ++
Sbjct: 191 LTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDM 250
Query: 63 VSWTAIIAAFAQ 74
VS T I+A F
Sbjct: 251 VSLTVILAGFTH 262
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPVRNVVSWTAIIAA 71
G Q +R G +V VG SL+ KC G D K+FE+MP NV+SWTAII A
Sbjct: 268 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 327
Query: 72 FAQEWEVD 79
+ Q E D
Sbjct: 328 YVQSGECD 335
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 21 LAVRSGFV-ANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V++G++ A+V VG LI F G+ YK+F+KMP RN+V+WT +I FAQ
Sbjct: 171 FVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQ 226
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ G+ +N + ++LIS +CG +++F +M RNV+SWT++I FA+
Sbjct: 474 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 533
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRN 61
+ SC RN + G ++SG + V ++LIS KCG+ +FE M R+
Sbjct: 51 LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRD 110
Query: 62 VVSWTAIIAAFAQ---EWEVDMCYTFI 85
+VSW+A+++ FA EW+ +TF+
Sbjct: 111 LVSWSAMVSCFANNSMEWQA--IWTFL 135
Score = 41.2 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G Q AV+ G + VG+SLIS + G D K F+ + +N+
Sbjct: 361 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 420
Query: 63 VSWTAIIAAFAQ 74
VS+ AI+ +A+
Sbjct: 421 VSYNAIVDGYAK 432
>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
Length = 916
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SCG ++ GF+ +V V ++L++ G+CG + +FE M VRN
Sbjct: 240 LSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNH 299
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAAFAQ
Sbjct: 300 VSWNAMIAAFAQ 311
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+G +V VG++L++ G G F+ +P +N+VSW A++ A+
Sbjct: 365 AGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYG 413
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 30 NVYVGSSLISFCGKCGENID-VYKMFEKMP--VRNVVSWTAIIAAFAQ 74
+V V S++++ KCG ++D ++F +MP +++V+W +IAA+AQ
Sbjct: 571 DVVVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQ 618
>gi|302818616|ref|XP_002990981.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
gi|300141312|gb|EFJ08025.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
Length = 578
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + G+ +IR Q +GF+ NV V + L+ GKCG +V K F MPV+N
Sbjct: 212 LNASGNLASIRAAKLVQACLSETGFLGNVEVANGLLCALGKCGSLEEVAKFFRVMPVQNQ 271
Query: 63 VSWTAIIAAFAQ 74
VSW + IAA AQ
Sbjct: 272 VSWNSAIAANAQ 283
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFC-GKCGENIDVYKMFEKMPVRN 61
+ +C +R+ G + A G A+ V ++L++ + G D ++F+ M RN
Sbjct: 110 LNACCHSRDFSEGLRIHAFARELGGDADTVVQTALVNIMYARLGSLEDAREIFDAMTTRN 169
Query: 62 VVSWTAIIAAFAQ 74
V+SWTA++ +Q
Sbjct: 170 VISWTAMVGVHSQ 182
>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
Length = 815
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RSGF+ NVY G +L+ C D K FE+M RNVV+W A+++A+AQ
Sbjct: 462 GKQLHSCVIRSGFM-NVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQ 520
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q V++ F+ NV+VG++ + F K +V K+F +MP + VS+ II A+A
Sbjct: 260 GQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYA 318
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
S+ +++ G Q V S + V +SL+ KCG+ + ++F ++ R+ V WT
Sbjct: 353 ASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWT 412
Query: 67 AIIAAFAQ 74
A+I+A Q
Sbjct: 413 AMISANVQ 420
>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
Length = 920
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SCG ++ GF+ +V V ++L++ G+CG + +FE M VRN
Sbjct: 244 LSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNH 303
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAAFAQ
Sbjct: 304 VSWNAMIAAFAQ 315
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 30 NVYVGSSLISFCGKCGENID-VYKMFEKMP--VRNVVSWTAIIAAFAQ 74
+V V S++++ KCG ++D ++F +MP +++V+W +IAA+AQ
Sbjct: 575 DVVVASAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQ 622
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+G +V VG++L++ G G F+ +P +N+VSW A++ A+
Sbjct: 369 AGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYG 417
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ST +IR Q C +S F + +G+SLI KCG D K+F+ + R+++S
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533
Query: 65 WTAIIAAFA 73
W AII+ +A
Sbjct: 534 WNAIISGYA 542
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q A++ G ++++VG++L+ F KC + K+F + N
Sbjct: 371 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 430
Query: 63 VSWTAIIAAFAQ 74
VSW I+ F+Q
Sbjct: 431 VSWNTIVVGFSQ 442
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVA--NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C + + RGG VR G V +++ + L++ GK G ++F++MP RN+V
Sbjct: 69 CIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMV 128
Query: 64 SWTAIIAAFAQ 74
S+ ++ A AQ
Sbjct: 129 SFVTLVQAHAQ 139
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G +G+ ++ V ++L+S GKCG K+F++M +RNV
Sbjct: 378 LSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNV 437
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+A+A
Sbjct: 438 VSWTAMISAYAH 449
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V++G+ NVYVG+ L+ KCG D K+F+ M R+ +SW+ +IA + +
Sbjct: 94 VKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVR 145
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G + V +GF + +SL++ KCG + ++F+ M R V
Sbjct: 277 LAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTV 336
Query: 63 VSWTAIIAAFAQE 75
VSWT II+A+ ++
Sbjct: 337 VSWTGIISAYVRK 349
>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g71420-like [Vitis vinifera]
Length = 741
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRN 61
+++CG N G Q LA+++ F + VYVG++LI +C CG + + ++E M RN
Sbjct: 172 ISACGGDDNC--GRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRN 229
Query: 62 VVSWTAIIAAF 72
+VSW ++IA F
Sbjct: 230 LVSWNSMIAGF 240
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLI-SFCGKCGENIDVYKMFEKMPVR-NVV 63
CG + Q QCL +++GF+ + V ++L+ ++ GE D Y++F ++ R +VV
Sbjct: 276 CGMGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVV 335
Query: 64 SWTAIIAAFAQ 74
SWT IIAAFA+
Sbjct: 336 SWTGIIAAFAE 346
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 36/53 (67%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
N+++ + +++ KCG ++MF++MP +N+VSWTA+++ +AQ + C+
Sbjct: 99 NLFLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECF 151
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R Q ++ GF ++ + ++LI C +CG ++F+KM R+
Sbjct: 375 LKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDT 434
Query: 63 VSWTAIIAAFA 73
VSW +++ A+A
Sbjct: 435 VSWNSMLKAYA 445
>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
Length = 591
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N YV + L++ KCGE + ++F++MP +N VSW +IIAAFA+
Sbjct: 343 GKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFAR 402
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
L V GF A V VG++L++ +CG ++F M +NV++WTA+I+ A+
Sbjct: 148 LVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMAR 201
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG----------FVANVYVG-SSLISFCGKCGENIDVY 51
+ SCG ++R G V++ ++ +V V +SL+S +CG D
Sbjct: 18 LASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCGRREDAA 77
Query: 52 KMFEKMPVRNVVSWTAIIAA 71
++F++M VR+ VSW ++IAA
Sbjct: 78 RVFDEMRVRDAVSWNSLIAA 97
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + R G Q L V++GF +++V S L+ KCG D +F + V
Sbjct: 232 ACARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVF 291
Query: 65 WTAIIAAFAQ 74
T I+ FAQ
Sbjct: 292 LTVILVGFAQ 301
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++++ G + AVR G V N++V S+L+S KC + +F+ MP R+VVS
Sbjct: 274 ACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVS 333
Query: 65 WTAIIAAFAQEWEVDMCYTFIV 86
W ++ A+ + E + ++ +
Sbjct: 334 WNGVLTAYFKNKEYEKGFSLFL 355
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A R G +++V+VG++LI GKC ++F+ + VR+VVSWT++ + + +
Sbjct: 190 ATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 242
Score = 37.7 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + N+R G + C R V ++ ++L+ KCG+ +F+ M ++VV+
Sbjct: 410 ACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVA 469
Query: 65 WTAIIAAFA 73
W +I A A
Sbjct: 470 WNTMIIANA 478
>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF +N +V SSLI KCG D K FEK + ++
Sbjct: 414 SCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSIT 473
Query: 65 WTAIIAAFAQEWEVDM 80
W +I+ A+AQ + D+
Sbjct: 474 WNSIMFAYAQHGQGDV 489
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L V+ G+ +VY GS+L+ KC D + +F+ +P RN VSW A+IA F
Sbjct: 121 GQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVL 180
Query: 75 EWEVDMCY 82
E + D +
Sbjct: 181 EGDHDTAF 188
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P+ + G+ ++R G + A R+GF +V+VGSSLI C K+F+ +PVR
Sbjct: 180 LPIFAEGA--DVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR 237
Query: 61 NVVSWTAIIAAFAQEWEVD 79
+ + W +++A AQ VD
Sbjct: 238 DAILWNSMLAGCAQNGSVD 256
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 1 MPVT------SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMF 54
MPVT +CG+ ++ G Q +R GF NV++ SSLI KCG ++F
Sbjct: 273 MPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIF 332
Query: 55 EKMPVRNVVSWTAIIAAFA 73
+++ ++VSWTA+I A
Sbjct: 333 DRIQSPDIVSWTAMIMGHA 351
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID-VYKMFEKMPVRN 61
+ +CG+ +++ G Q+ R VYVG+++I KC E+ID K+F++MP R+
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKC-ESIDCARKVFDEMPERD 214
Query: 62 VVSWTAIIAAFAQ 74
V+SWT +IAA+A+
Sbjct: 215 VISWTELIAAYAR 227
>gi|410109979|gb|AFV61069.1| pentatricopeptide repeat-containing protein 81, partial [Junellia
succulentifolia]
Length = 406
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE P + V+
Sbjct: 274 SCSDLATLQLGRQIHVLVVKSGFEGNEYVCSALIFMYSKCGIIEDARESFESSPKNSSVT 333
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 334 WNSIIFAYAQ 343
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CGS ++ G Q VRS F ++YV S LI+ KCG+ + ++F++ +++
Sbjct: 204 LSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDI 263
Query: 63 VSWTAIIAAFAQ 74
V W +IIA +AQ
Sbjct: 264 VMWNSIIAGYAQ 275
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 10/51 (19%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+G V+ YV + +IS + K+F+KMP RNVVSWTA+I + QE
Sbjct: 29 NGLVSG-YVQNGMIS---------EARKVFDKMPERNVVSWTAMIRGYVQE 69
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ST +IR Q C +S F + +G+SLI KCG D K+F+ + R+++S
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533
Query: 65 WTAIIAAFA 73
W AII+ +A
Sbjct: 534 WNAIISGYA 542
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q A++ G ++++VG++L+ F KC + K+F + N
Sbjct: 371 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 430
Query: 63 VSWTAIIAAFAQ 74
VSW I+ F+Q
Sbjct: 431 VSWNTIVVGFSQ 442
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVA--NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C + + RGG VR G V +++ + L++ GK G ++F++MP RN+V
Sbjct: 69 CIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMV 128
Query: 64 SWTAIIAAFAQ 74
S+ ++ A AQ
Sbjct: 129 SFVTLVQAHAQ 139
>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
Length = 604
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG +RN+ G + V +G +++ + ++ GKCG D+ + F +M RN+VS
Sbjct: 42 ACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMKRRNIVS 101
Query: 65 WTAIIAAFAQ 74
W A+I+A+AQ
Sbjct: 102 WNAVISAYAQ 111
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ +G +N +G++L++ GKCG + K+F+K+ R+VV W+AI+ A+A+
Sbjct: 262 IEAGLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYAR 313
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA+ GF ++ V ++L++ K G ++F+++ +++VVSW+ +IAA+AQ
Sbjct: 159 LALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQ 212
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPVRNVVSWTAIIAA 71
G Q +R G +V VG SL+ KC G D K+FE+MP NV+SWTAII A
Sbjct: 250 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 309
Query: 72 FAQEWEVD 79
+ Q E D
Sbjct: 310 YVQSGECD 317
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 21 LAVRSGFV-ANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V++G++ A+V VG LI F G+ YK+F+KMP RN+V+WT +I FAQ
Sbjct: 153 FVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQ 208
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ G+ +N + ++LIS +CG +++F +M RNV+SWT++I FA+
Sbjct: 456 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 515
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRN 61
+ SC RN + G ++SG + V ++LIS KCG+ +FE M R+
Sbjct: 33 LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRD 92
Query: 62 VVSWTAIIAAFAQ---EWEVDMCYTFI 85
+VSW+A+++ FA EW+ +TF+
Sbjct: 93 LVSWSAMVSCFANNSMEWQA--IWTFL 117
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G Q AV+ G + VG+SLIS + G D K F+ + +N+
Sbjct: 343 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 402
Query: 63 VSWTAIIAAFAQ 74
VS+ AI+ +A+
Sbjct: 403 VSYNAIVDGYAK 414
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +++ G + + + GF ++V+VG++L+ F G CG DV ++F++M R+V
Sbjct: 14 LKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDV 73
Query: 63 VSWTAIIAAFA 73
VSW ++I F+
Sbjct: 74 VSWNSVIGVFS 84
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C + G Q C V++G + V VG++L+ GKCG D ++F+++ R
Sbjct: 116 LPV--CAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISER 173
Query: 61 NVVSWTAIIAAFA 73
N VSW AII + A
Sbjct: 174 NGVSWNAIITSLA 186
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + ++R G ++++V ++LI K G ++ +F ++ +N+VSW A++A FAQ
Sbjct: 229 GKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQ 288
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ G + LAVR ++++ ++L+ F KCG K+F ++P R+
Sbjct: 418 ISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDT 477
Query: 63 VSWTAIIAAFAQEWEVDM 80
SW ++I + E+ +
Sbjct: 478 ASWNSMILGYGMLGELTI 495
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ST +IR Q C +S F + +G+SLI KCG D K+F+ + R+++S
Sbjct: 455 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 514
Query: 65 WTAIIAAFA 73
W AII+ +A
Sbjct: 515 WNAIISGYA 523
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q A++ G ++++VG++L+ F KC + K+F + N
Sbjct: 352 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 411
Query: 63 VSWTAIIAAFAQ 74
VSW I+ F+Q
Sbjct: 412 VSWNTIVVGFSQ 423
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVA--NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C + + RGG VR G V +++ + L++ GK G ++F++MP RN+V
Sbjct: 69 CIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMV 128
Query: 64 SWTAIIAAFAQ 74
S+ ++ A AQ
Sbjct: 129 SFVTLVQAHAQ 139
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++ +T NI+ G Q + +++G+ + + LI+ KCG D + F +MP +NV
Sbjct: 624 VSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNV 683
Query: 63 VSWTAIIAAFAQ 74
VSW A+I ++Q
Sbjct: 684 VSWNAMITGYSQ 695
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q + SG+ ++ +G++L+S +CG D Y FEK+ ++
Sbjct: 523 ISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDN 582
Query: 63 VSWTAIIAAFAQ 74
+SW A+I+ FAQ
Sbjct: 583 ISWNALISGFAQ 594
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G Q ++SGF NVYV S LI K GE + +++ +VVS
Sbjct: 424 TCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVS 483
Query: 65 WTAIIAAFAQ 74
WTA+IA + Q
Sbjct: 484 WTAMIAGYTQ 493
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G +AVRS AN++V S+L+ GKCG D ++F + P RN+
Sbjct: 221 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 280
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +A
Sbjct: 281 VTWNAMIGGYAH 292
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + G Q+ V+ GF +V V +S++ F GKC +F+ M VRN V
Sbjct: 121 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 180
Query: 64 SWTAIIAAFAQ 74
SW +++AA+AQ
Sbjct: 181 SWCSMVAAYAQ 191
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++N+ + S F + ++ +SLI KCG ++ +K+F+KM +++
Sbjct: 58 ITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDM 117
Query: 63 VSWTAIIAAFAQ 74
VSWT++IA +AQ
Sbjct: 118 VSWTSLIAGYAQ 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ + +VYVGS+L+ +CG+ +F+K+ +N VSW A+I+ FA+
Sbjct: 171 GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230
Query: 75 E 75
+
Sbjct: 231 K 231
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V+S +VG++++ K G ID K+FE++ +++V+W +++ AFAQ
Sbjct: 280 VKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQ 331
>gi|357114751|ref|XP_003559158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 695
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+R G Q LAVR+GF + +VGSSL+ +CG+ +F++M +VV +T++++A
Sbjct: 109 LRAGEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVGYTSLVSA 168
Query: 72 FAQEWEVDM 80
F + E ++
Sbjct: 169 FCRSGEFEL 177
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q+ CLA++ G + G++LI+ KCG+ F+ M R+V
Sbjct: 400 LSSCADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDV 459
Query: 63 VSWTAIIAAFAQEWEVDM 80
SW ++I +AQ + M
Sbjct: 460 TSWNSLIHGYAQHGDASM 477
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + I G++ +AV+ GF+ +V VG+SL+ KCG+ D K+F+ + ++V
Sbjct: 359 VSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDV 418
Query: 63 VSWTAIIAAFAQ 74
+W ++I + Q
Sbjct: 419 YTWNSMITGYCQ 430
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+V+V + L+S KCG D K+F+ M RN+ +W+A+I A+++E
Sbjct: 114 DVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRE 159
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 37/69 (53%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ G + ++ G + + V +S+++ KCGE K F +M R+V++W
Sbjct: 191 CANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAW 250
Query: 66 TAIIAAFAQ 74
+++ A+ Q
Sbjct: 251 NSVLLAYCQ 259
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + G Q C ++ GF N +VG++LI G D YK+F +M RNV
Sbjct: 143 LKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNV 202
Query: 63 VSWTAIIAAF 72
V+WT++I +
Sbjct: 203 VAWTSMINGY 212
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G A SG NVYVG++L+ KCG + +F M +++
Sbjct: 338 LSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDL 397
Query: 63 VSWTAIIAAFA 73
+SW +I A
Sbjct: 398 ISWNTLIGGLA 408
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +++ + Q Q + +GF N Y+ L++ C ++F+++P N+
Sbjct: 45 LQSCKTSKQVH---QIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNI 101
Query: 63 VSWTAIIAAFAQ 74
W ++ +AQ
Sbjct: 102 ALWNSMFRGYAQ 113
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
Q L +++ + +V+VGSSL++F K G + K+F++MP RN+VSWT +I+ +A +
Sbjct: 133 QVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASK 191
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G Q C+ V++G + V V ++L++ KCG +FE +N ++W+A+I
Sbjct: 229 VDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITG 288
Query: 72 FAQ 74
++Q
Sbjct: 289 YSQ 291
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I G Q ++SG+ +Y ++L+ K G D K F+ + ++
Sbjct: 321 LKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDL 380
Query: 63 VSWTAIIAAFAQ 74
V WT+IIA + Q
Sbjct: 381 VLWTSIIAGYVQ 392
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q ++ G + + S+L + KCG + +F +M R++
Sbjct: 422 LKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDI 481
Query: 63 VSWTAIIAAFAQ 74
VSW A+I+ +Q
Sbjct: 482 VSWNAMISGLSQ 493
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q ++SG +A+V VG++L+S KCG K F +MP R +
Sbjct: 385 LSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTM 444
Query: 63 VSWTAIIAAFAQ 74
+SWT++I FA+
Sbjct: 445 ISWTSMITGFAR 456
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q L+++ G+ +++ + +S++ KCG I+ K+FE M N+
Sbjct: 273 LSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNL 332
Query: 63 VSWTAIIAAFAQ 74
V+W A+IA A+
Sbjct: 333 VTWNAMIAGHAK 344
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V++GF +++V + L++ KCG +K+F+ +P RNV +WT ++ + Q
Sbjct: 91 VKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 142
>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ +R G + + GF NV SSL+ GKCG ++F++M RN
Sbjct: 271 LTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNS 330
Query: 63 VSWTAIIAAFAQ 74
VSW+A++A +
Sbjct: 331 VSWSALLAVYCH 342
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G + C +R G +V V S+L+ KCG Y++F++MP RN+
Sbjct: 368 IRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNL 427
Query: 63 VSWTAIIAAFAQ 74
++W ++I FAQ
Sbjct: 428 ITWNSMIHGFAQ 439
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEKMPVRN 61
+ +C + G Q+ V+SG + +VG+SL+S K G +++ ++F+ + V++
Sbjct: 67 LQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKD 126
Query: 62 VVSWTAIIAAFAQE 75
VVSW ++I + +E
Sbjct: 127 VVSWASMITGYVRE 140
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C N+ G + + VR GF +N + SSLI G+ + D ++F+++ +
Sbjct: 169 IKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDP 228
Query: 63 VSWTAIIAAFAQ 74
V WT +I+AF +
Sbjct: 229 VCWTTVISAFTR 240
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + AV+ G V++V G++LI+ K G D ++F++MP R+V
Sbjct: 354 LSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 413
Query: 63 VSWTAIIAAFA 73
VSWTA++ +A
Sbjct: 414 VSWTALVGGYA 424
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + + +G N VG++LIS KCG D ++F+ M R+
Sbjct: 152 LSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDE 211
Query: 63 VSWTAIIAAFAQ 74
VSWT + A+A+
Sbjct: 212 VSWTTLTGAYAE 223
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G + V++G A++ V ++L+S KCG D ++ E M R+V
Sbjct: 455 LKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDV 514
Query: 63 VSWTAIIAAFAQ 74
V+W +I AQ
Sbjct: 515 VTWNTLIGGLAQ 526
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS + G Q V S ++V V ++L KCG D ++FE +P R+V
Sbjct: 253 LSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDV 312
Query: 63 VSWTAIIAAFAQEWEVD 79
++W +I +++
Sbjct: 313 IAWNTMIGGLVDSGQLE 329
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +++ G Q +R G NVY+ ++L+ CG + ++F+K ++V
Sbjct: 51 LQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSV 110
Query: 63 VSWTAIIAAFAQ 74
VSW +I+ +A
Sbjct: 111 VSWNVMISGYAH 122
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + G Q C ++ GF N +VG++LI G D YK+F +M RNV
Sbjct: 206 LKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNV 265
Query: 63 VSWTAIIAAF 72
V+WT++I +
Sbjct: 266 VAWTSMINGY 275
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G A SG NVYVG++L+ KCG + +F M +++
Sbjct: 401 LSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDL 460
Query: 63 VSWTAIIAAFA 73
+SW +I A
Sbjct: 461 ISWNTLIGGLA 471
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC +++ + Q Q + +GF N Y+ L++ C ++F+++P N+
Sbjct: 110 SCKTSKQVH---QIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIAL 166
Query: 65 WTAIIAAFAQ 74
W ++ +AQ
Sbjct: 167 WNSMFRGYAQ 176
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + G +R G + YVG+SLI KCG D K+F+KM VR++
Sbjct: 188 LKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDM 247
Query: 63 VSWTAIIAAFAQEWEV 78
SW A+IA + +E E+
Sbjct: 248 ASWNALIAGYMKEGEI 263
>gi|357478575|ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510628|gb|AES91770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 665
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +IR GT+ L V SG+ +++ V ++LI GKC D K+F++M N
Sbjct: 79 INSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFDEMNYSNE 138
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
V+W +++ A+A DM +
Sbjct: 139 VTWCSLLFAYANTCRFDMAF 158
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G C ++SG+ + V +S++SF K + D K+F N
Sbjct: 211 MSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLECHGDAVKVFNSGGAFNQ 270
Query: 63 VSWTAIIAAFAQ 74
VSW AII A +
Sbjct: 271 VSWNAIIDAHMK 282
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C S + G Q +++GF+++V V S+L++ KCG D K F +M +R +
Sbjct: 400 LSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTL 459
Query: 63 VSWTAIIAAFAQ 74
V+WT++I+ ++Q
Sbjct: 460 VTWTSMISGYSQ 471
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C T ++ G V++G A+++V +SL++ +CG + D +F++MP +NVV+W
Sbjct: 88 CVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTW 147
Query: 66 TAIIAAF 72
TA+I +
Sbjct: 148 TALITGY 154
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ ++ G Q Q + G N+ V +S + + GE + + FE+M ++++W
Sbjct: 291 CGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITW 350
Query: 66 TAIIAAFAQEWE 77
A+I+ +AQ E
Sbjct: 351 NAMISGYAQIME 362
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ N G+Q ++ ++ +G+SL K G + F +P +NV
Sbjct: 186 LNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNV 245
Query: 63 VSWTAIIAAFAQE 75
++WT +I+A A++
Sbjct: 246 ITWTTMISACAED 258
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R++ G + ++SG N Y+ ++L+S KCG D ++F+ + RN+VSW
Sbjct: 57 CARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSW 116
Query: 66 TAIIAAFA---QEWEVDMCY 82
TA+I AF + E CY
Sbjct: 117 TAMIEAFVAGNKNLEAFKCY 136
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S ++ G + V +G+ +VY+ S+L+S KCG D +F +M RNV
Sbjct: 357 LTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNV 416
Query: 63 VSWTAIIAA 71
V+WTAII
Sbjct: 417 VAWTAIITG 425
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
V +G VG+SL+ KCG+ +F+++P +NVV+WT +IA +AQ+ +VD+
Sbjct: 175 VEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + G + ++SG+ ++V +SLI+ KCG + K+F +P R+VV+W
Sbjct: 259 CTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTW 318
Query: 66 TAIIAAFAQ 74
TA++ +AQ
Sbjct: 319 TAMVTGYAQ 327
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RSG+ ++V+ GS L+ KCG + + F++MP RN +SW A+I+A+A
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516
Query: 75 EWE 77
E
Sbjct: 517 YGE 519
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L +RS V NV+V +SL+ F KC D+ ++F++MP R+ VS+ IIAA+A
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 313
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ GS ++ G Q V G + +G++LI KCG F ++
Sbjct: 344 LSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSA 403
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 404 ISWTALITGYVQ 415
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RSG+ ++V+ GS L+ KCG + + F++MP RN +SW A+I+A+A
Sbjct: 655 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 714
Query: 75 EWE 77
E
Sbjct: 715 YGE 717
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
QY RS V NV+V +SL+ F KC D+ ++F++MP R+ VS+ IIAA+A
Sbjct: 455 QYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 511
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ GS ++ G Q V G + +G++LI KCG F ++
Sbjct: 542 LSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSA 601
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 602 ISWTALITGYVQ 613
>gi|147795881|emb|CAN65318.1| hypothetical protein VITISV_006411 [Vitis vinifera]
Length = 1052
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ CG+ R G Q C A++ G+V AN++ ++L+ F CG ID K FE + +
Sbjct: 219 IRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYSVCGNLIDAKKSFEAIRDED 278
Query: 62 VVSWTAIIAAFA 73
V+SW +I++ FA
Sbjct: 279 VISWNSIVSVFA 290
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C A++SGF + V SLI K G +++FE++ N + +T+II +A+
Sbjct: 430 HCXAIKSGFEFDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYAR 485
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +RSG+ ++V+ GS L+ KCG + + F++MP RN +SW A+I+A+A
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516
Query: 75 EWE 77
E
Sbjct: 517 YGE 519
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L +RS V NV+V +SL+ F KC D+ ++F++MP R+ VS+ IIAA+A
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA 313
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ GS ++ G Q V G + +G++LI KCG F ++
Sbjct: 344 LSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSA 403
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I + Q
Sbjct: 404 ISWTALITGYVQ 415
>gi|326521542|dbj|BAK00347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 861
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ + G Q LA +SG + VG++++S GKCG+ + F++MP R++VSW
Sbjct: 499 CGALGFMELGKQMHLLAAKSGLLRACGVGNAIVSMYGKCGQLENAVTFFQRMPHRDLVSW 558
Query: 66 TAIIAA 71
A+I A
Sbjct: 559 NALITA 564
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G L+++SG ++ VG++LI F + G+++ D+ +F++MPV++V+SWT ++ +
Sbjct: 260 GAAVHALSLKSGLEVDLSVGNALIGFYAEHGDSVEDMVGVFQRMPVKDVISWTGLLNGYM 319
Query: 74 QEWEVD 79
+ VD
Sbjct: 320 EFGLVD 325
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+T+C N R GTQ LA + ++ ++ V ++L+ KCG D +MF M R+
Sbjct: 146 LTACIRRGNPRLGTQVHALAAKGRYIGGSLLVANALLGMYVKCGRLEDALRMFHGMEERD 205
Query: 62 VVSWTAIIAAFAQ 74
V SW +++ +
Sbjct: 206 VSSWNTVLSGLVE 218
>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
Length = 1083
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRG-GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+T+C + + G Q V++G + +VYVG++L+ F G G + K+FE+MP N
Sbjct: 381 ITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN 440
Query: 62 VVSWTAIIAAFA 73
VVSWT+++ ++
Sbjct: 441 VVSWTSLMVGYS 452
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ GF ++++V ++ + GKCGE DV KM + R+ +SW +I+AFA+
Sbjct: 730 GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFAR 789
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ +GF +++++ + LI F K G+ I +F+ MP R+VVSWTA+++ ++Q
Sbjct: 57 ITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N++ G L V+ G +NV + ++L++ + G + D +F+ M R+++SW +++A
Sbjct: 592 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 651
Query: 71 AFAQE 75
+ Q+
Sbjct: 652 CYVQD 656
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+G++LI K GE D + F++M +NV+SWT++I+ +A+
Sbjct: 277 MGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAK 318
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
V +L+ F KCG+ D +F M R+VVSW A+I +A
Sbjct: 127 VKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYA 169
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+SCG + G Q ++ GF +V V +SLIS + +F+ M +++
Sbjct: 484 SSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 543
Query: 64 SWTAIIAAFAQ 74
SW A+I+A+A
Sbjct: 544 SWNAMISAYAH 554
>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
Length = 591
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N YV + L++ KCGE + ++F++MP +N VSW +IIAAFA+
Sbjct: 343 GKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFAR 402
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
L V GF A V VG++L++ +CG ++F M +NV++WTA+I+ A+
Sbjct: 148 LVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMAR 201
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + R G Q L V++GF A+++V S L+ KCG D +F + V
Sbjct: 232 ACARSLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVF 291
Query: 65 WTAIIAAFAQ 74
T I+ FAQ
Sbjct: 292 LTVILVGFAQ 301
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG----------FVANVYVG-SSLISFCGKCGENIDVY 51
+ SCG ++R G V++ ++ +V V ++L+S +CG D
Sbjct: 18 LASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYARCGRREDAA 77
Query: 52 KMFEKMPVRNVVSWTAIIAA 71
++F++M VR+ VSW ++IAA
Sbjct: 78 RVFDEMRVRDAVSWNSLIAA 97
>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 585
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ +T + G Q L + GF AN++VG++L+ KC + ++F++MP RN+
Sbjct: 17 LSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNL 76
Query: 63 VSWTAIIAAF 72
VSW ++I F
Sbjct: 77 VSWNSMIVGF 86
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
S S + GT ++ G+V N+ + SLI+ KCG +D Y++FE + NV+S
Sbjct: 222 SSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVIS 281
Query: 65 WTAIIAAF 72
WTA+I+A+
Sbjct: 282 WTAMISAY 289
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q + V+ G V YV +SL+ KC + K+F+ + R+V
Sbjct: 119 LSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDV 178
Query: 63 VSWTAIIAAFAQ 74
V+W ++ F Q
Sbjct: 179 VTWNVLVMGFVQ 190
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RN 61
+T+C + G + A + G V N +VG++LI KCG D +K+FE+M V R
Sbjct: 230 LTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVART 289
Query: 62 VVSWTAIIAAFA 73
VVSWT++I A
Sbjct: 290 VVSWTSLIVGLA 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R 60
+ +C +R G A ++G VA V+V +SL+ G CG +++F+++PV R
Sbjct: 127 LQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLER 186
Query: 61 NVVSWTAIIAAFA 73
N+VSW +++ FA
Sbjct: 187 NLVSWNSVMNGFA 199
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + R G Q L +SG ++ Y+ ++LI GE YK+F+KMP R+V
Sbjct: 108 LKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDV 167
Query: 63 VSWTAIIAAF 72
VSWT+II F
Sbjct: 168 VSWTSIIDGF 177
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C T + G + F +N V ++LI KCG ++F++ ++V
Sbjct: 211 ACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYV 270
Query: 65 WTAIIAAFA 73
WTAIIA A
Sbjct: 271 WTAIIAGLA 279
>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
Length = 841
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q+ L VR+GF+++ G++LIS KCG ++ ++F++M V+++VSW A+I +A
Sbjct: 469 GRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYA 527
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
NV +L++ + G + ++F++MP RNVV+W +++ + Q +V+ Y +
Sbjct: 228 NVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFI 284
>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 736
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G Q L ++ +N +VG+ LI+ KCGE + K+F + RN VS
Sbjct: 199 ACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVS 258
Query: 65 WTAIIAAFAQ 74
W ++IAAFA+
Sbjct: 259 WNSMIAAFAR 268
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G Q L + G +N+ + S+L+ KCG D ++FE +
Sbjct: 96 LTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDE 155
Query: 63 VSWTAIIAAFAQ 74
VS T I+ F Q
Sbjct: 156 VSMTVILVGFTQ 167
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 43 KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
KCG D K+F+ MP R+ VSW +++ F + ++D
Sbjct: 4 KCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLD 40
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG N GT +V+ G V +V+VGS+L+ K GE K+F++MP RN
Sbjct: 123 LKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNA 182
Query: 63 VSWTAIIAAFAQ 74
V+WTA+I +
Sbjct: 183 VTWTAVITGLVR 194
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + ++ G Q + GFV + V +S+++ KCGE V K+F M R++
Sbjct: 325 ISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDI 384
Query: 63 VSWTAIIAAFAQ 74
++W+ IIAA++Q
Sbjct: 385 ITWSTIIAAYSQ 396
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G ++ GF N +V +SL + KCG+ F KM +VVSWT I+ A+ Q
Sbjct: 236 GRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQ 295
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CGS + G Q + G V S+LI KCG + K+F ++
Sbjct: 426 LSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDI 485
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I+ +A+
Sbjct: 486 ISWTAMISGYAE 497
>gi|302811008|ref|XP_002987194.1| hypothetical protein SELMODRAFT_425968 [Selaginella
moellendorffii]
gi|300145091|gb|EFJ11770.1| hypothetical protein SELMODRAFT_425968 [Selaginella
moellendorffii]
Length = 164
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + R++ G + AV NV VG+SL+ G CG + + F+K+ V+N
Sbjct: 17 LAACSNIRDLDRGKEIHVQAVEKKLDTNVIVGNSLVQMYGSCGCCAEAREAFDKIAVKNA 76
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
VSW+ I++A +Q V+ F
Sbjct: 77 VSWSVIVSALSQNGRVEEAIRF 98
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S R G Q C V+SGF N+YV S+LI KC E + E M V +V
Sbjct: 234 LTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDV 293
Query: 63 VSWTAII 69
VSW ++I
Sbjct: 294 VSWNSMI 300
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++SGF +++ V +SL++ KCG D +F M +R++++WT +I +A+
Sbjct: 449 GQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAK 508
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S ++ + CL V++G+ V ++L+ K G K+FE M ++V+SWTA
Sbjct: 341 SRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTA 400
Query: 68 IIAAFAQEWEVD 79
++ D
Sbjct: 401 LVTGNTHNGSYD 412
>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 765
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + G Q +++GF+++V VGSS+I+ KCG K+F +M +R +
Sbjct: 398 LSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVFLEMSIRTM 457
Query: 63 VSWTAIIAAFAQ 74
+ WT +I FAQ
Sbjct: 458 ILWTTMITGFAQ 469
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q L + G+ +N+ V +SL+ KCG ++ ++F+ M N+
Sbjct: 286 LSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMNDVNL 345
Query: 63 VSWTAIIAAFAQEWEV 78
V+W A+IA AQ E+
Sbjct: 346 VTWNAMIAGHAQMMEL 361
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPV 59
+ + +C S +++ G Q ++ + +G++L S KCG ++V F ++
Sbjct: 180 IALNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTAFRRIKE 239
Query: 60 RNVVSWTAIIAAFAQEWE 77
++V+SWTA I+A ++ E
Sbjct: 240 KDVISWTAAISACGEKGE 257
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C V++G + ++ S L++ KCG ++F+ M RN V+WT ++ + Q
Sbjct: 96 HCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQ 151
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q ++ G +VYV ++L++F G C + +D K+F++MP R V
Sbjct: 771 LKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTV 830
Query: 63 VSWTAIIAA 71
VSW A+I +
Sbjct: 831 VSWNAVITS 839
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C N+ G + G V N +G++L+ K G +F++M +NV +W
Sbjct: 875 CAEMGNLGLGRWIHSQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTW 934
Query: 66 TAIIAAFAQ 74
+A+I AQ
Sbjct: 935 SAMILGLAQ 943
>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 700
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + NI G AV++ +++V+VGSSL+ + G+ ++F +MP RN
Sbjct: 109 LKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNA 168
Query: 63 VSWTAIIAAFAQ 74
V+WTAII
Sbjct: 169 VTWTAIITGLVH 180
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C R ++ G Q + GF A V+V +SL + +CGE D +FE M R
Sbjct: 208 IALKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSER 267
Query: 61 NVVSWTAIIAAF 72
+VVSWT++I A+
Sbjct: 268 DVVSWTSLIVAY 279
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ GG Q LA G N V S+LI+ KCG + K+FE+ ++VS TA+I
Sbjct: 421 LEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMING 480
Query: 72 FAQE 75
+A+
Sbjct: 481 YAEH 484
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G Q C G ++ V +S++ CG+ +F+ M R+++
Sbjct: 312 SACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDII 371
Query: 64 SWTAIIAAFAQ 74
SW+ II ++Q
Sbjct: 372 SWSTIIGGYSQ 382
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G L + GF +N+++ + +++ G CGE D +FEKMP R+
Sbjct: 17 LKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDA 76
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
V+W +IA A+ ++D Y F +
Sbjct: 77 VTWNIVIAQLAKRGDIDGAYGFFL 100
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + +SGF NV+V ++LI KCG + ++F +M R V
Sbjct: 149 LAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTV 208
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW+A+IA A + +
Sbjct: 209 VSWSAMIAGLAMHGQAE 225
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G Q C+AV++G ++ V VG++L++ KCG D + FE +N ++W+A+I
Sbjct: 225 VNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITG 284
Query: 72 FAQEWEVD 79
+AQ + D
Sbjct: 285 YAQSGDSD 292
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G Q V+ GF V +GS+L + KCG D +F +MP R+V
Sbjct: 418 LKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDV 477
Query: 63 VSWTAIIAAFAQ 74
+SW A+I+ +Q
Sbjct: 478 ISWNAMISGLSQ 489
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+ + + GG +A++ +V+VGSSL++ K G + K+F+ MP RN V
Sbjct: 116 TAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSV 175
Query: 64 SWTAIIAAFAQE 75
SW +I+ +A +
Sbjct: 176 SWATMISGYASQ 187
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q ++ GF + +YV ++L+ KC +D K F+ + ++
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDI 376
Query: 63 VSWTAIIAAFAQEWE 77
V WT++I + Q E
Sbjct: 377 VLWTSMIGGYVQNGE 391
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R+++ G ++S + VY+ +SL++ KC + +FE++ ++VVSW II
Sbjct: 20 RSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCII 78
Query: 70 AAFAQ 74
++Q
Sbjct: 79 NGYSQ 83
>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
Length = 829
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T N++ G + QC +R GFV+++ + S+ + KCG +D K+F +++
Sbjct: 377 MSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDL 436
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+A+
Sbjct: 437 ILWNTLLAAYAE 448
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G ++G V+V SSL GKCG D K+F+++P R VV+
Sbjct: 177 ACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVA 236
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 237 WNALMVGYVQ 246
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC +F K+ RNV
Sbjct: 75 CVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRARNVF 134
Query: 64 SWTAIIA 70
SW AII
Sbjct: 135 SWAAIIG 141
>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella
moellendorffii]
gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella
moellendorffii]
Length = 620
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C ++ + G Q V SG +N+ + +SL++ GKC + K+F+ M +R
Sbjct: 15 IALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLR 74
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWTA++A +AQ
Sbjct: 75 DVVSWTAMLAVYAQ 88
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + + G A SGFV ++ +G+++I+ GKCG D +F++MP + ++
Sbjct: 255 ACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLI 314
Query: 64 SWTAIIAAFAQ 74
SW ++I A+A
Sbjct: 315 SWNSLIVAYAH 325
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CG +++ Q A GF N VG+S+++ +CG +D K F+ + + +V
Sbjct: 151 ACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLV 210
Query: 64 SWTAIIAAFAQ 74
+W+ ++AA+AQ
Sbjct: 211 AWSIMLAAYAQ 221
>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
Length = 756
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q+ L VR+GF+++ G++LIS KCG ++ ++F++M V+++VSW A+I +A
Sbjct: 469 GRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYA 527
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
NV +L++ + G + ++F++MP RNVV+W +++ + Q +V+ Y +
Sbjct: 228 NVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFI 284
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C ++ G L V++ V +V+V ++L+SF G G D ++F+ MP RN+
Sbjct: 191 VKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNL 250
Query: 63 VSWTAIIAAFAQEWEVDMCYTFI 85
VSW ++I F+ + C+ +
Sbjct: 251 VSWNSMIRVFSDNGLSEECFLLL 273
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++++ G + L +R+ + +V SL+S CGE + +F+ M + +
Sbjct: 501 LSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTL 560
Query: 63 VSWTAIIAAFAQ 74
VSW ++ + Q
Sbjct: 561 VSWNTMVNGYLQ 572
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C R I G LA++ V V ++L+ KCG D +F+ +
Sbjct: 296 LPV--CARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNK 353
Query: 61 NVVSWTAIIAAFAQEWEVDMCYTFI 85
NVVSW ++ F+ ++ + +
Sbjct: 354 NVVSWNTMVGGFSAAGDIHKTFDLL 378
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++R G + A++ N ++ S+I K G ++ +K+F + R+V S
Sbjct: 604 ACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVAS 663
Query: 65 WTAIIAAFA 73
W A++ +
Sbjct: 664 WNAMVMGYG 672
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q L +SGF +N++V SSLI KCG + YK+F + RNV
Sbjct: 273 ICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNV 332
Query: 63 VSWTAIIAAFAQ 74
V W A+I+ ++
Sbjct: 333 VLWNAMISGLSR 344
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A+++ NV+V ++L+ KCG D +FE MP R+VV+W+++ A + Q
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
G ++ + LI+ KCG ++F++MP R++VSW +I + Q E
Sbjct: 94 GLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGE 145
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1724
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRG-GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+T+C + + G Q V++G + +VYVG++L+ F G G + K+FE+MP N
Sbjct: 852 ITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN 911
Query: 62 VVSWTAIIAAFA 73
VVSWT+++ ++
Sbjct: 912 VVSWTSLMVGYS 923
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S R + G Q Q + FV N++V S+L+ F KCG+ D +F M R+VVS
Sbjct: 140 ACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVS 199
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 200 WNAMIGGYA 208
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + GTQ A++ +V +G++LI K GE D + F++M +NV+SW
Sbjct: 344 CANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISW 403
Query: 66 TAIIAAFAQ 74
T++I+ +A+
Sbjct: 404 TSLISGYAK 412
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ GF ++++V ++ + GKCGE DV KM + R+ +SW +I+AFA+
Sbjct: 1371 GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFAR 1430
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ +GF +++++ + LI F K G+ I +F+ MP R+VVSWTA+++ ++Q
Sbjct: 57 ITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N++ G L V+ G +NV + ++L++ + G + D +F+ M R+++SW +++A
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 1122
Query: 71 AFAQE 75
+ Q+
Sbjct: 1123 CYVQD 1127
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
L + +GF + VG++L++ GK G ++ K+ + MP + V+W A+I A+ E
Sbjct: 1172 HALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 1230
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V +GF ++ YV +SLI+ KCG+ +F+ + ++ ++W A++AA A
Sbjct: 1278 VLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 1329
Score = 34.7 bits (78), Expect = 8.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+SCG + G Q ++ GF +V V +SLIS + +F+ M +++
Sbjct: 955 SSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 1014
Query: 64 SWTAIIAAFAQ 74
SW A+I+A+A
Sbjct: 1015 SWNAMISAYAH 1025
>gi|224106960|ref|XP_002333584.1| predicted protein [Populus trichocarpa]
gi|222837528|gb|EEE75893.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + L V+ G+ NVY GS+L+ +C D Y +F MP RN +SW A++ F Q
Sbjct: 60 GQKGHSLIVKIGYERNVYAGSALLDMYAECDRVEDAYDVFRGMPTRNFISWNALLDGFVQ 119
Query: 75 EWEVDMCY 82
+ D +
Sbjct: 120 VGDRDTAF 127
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 3 VTSCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+CG + ++ R G Q +SG +++VYV ++++ G G K+FE+MP RN
Sbjct: 180 VTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN 239
Query: 62 VVSWTAIIAAFAQEWE 77
VVSWT+++ ++ + E
Sbjct: 240 VVSWTSLMVGYSDKGE 255
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
L V SG N +G++L+S GK GE + ++ +MP R+VV+W A+I +A++ + D
Sbjct: 477 LVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 535
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRNVVSWTAIIAAFA 73
G Q V+SG + + V +SLIS G G N+D +F++M R+ +SW +I AA+A
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMG-NVDYANYIFDQMSERDTISWNSIAAAYA 327
Query: 74 QEWEVDMCY 82
Q ++ +
Sbjct: 328 QNGHIEESF 336
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G V +GF ++ +V +SLI+ KCG+ +F + RN+++W A++AA A
Sbjct: 573 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 632
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
L V+ GF + V V ++L+ G +++ +F++MP ++++SW +++A+F +
Sbjct: 376 LVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 430
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ GF + ++ ++ KCGE +V KM R++ SW +I+A +
Sbjct: 674 GQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGR 733
Query: 75 E-WEVDMCYTF 84
+ ++C TF
Sbjct: 734 HGYFEEVCATF 744
>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 928
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 3 VTSCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+CG + ++ R G Q +SG +++VYV ++++ G G K+FE+MP RN
Sbjct: 48 VTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN 107
Query: 62 VVSWTAIIAAFAQEWE 77
VVSWT+++ ++ + E
Sbjct: 108 VVSWTSLMVGYSDKGE 123
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
L V SG N +G++L+S GK GE + ++ +MP R+VV+W A+I +A++ + D
Sbjct: 370 LVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 428
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
++SCG ++ G Q V+SG + + V +SLIS G G N+D +F++M R+
Sbjct: 150 ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMG-NVDYANYIFDQMSERD 208
Query: 62 VVSWTAIIAAFAQEWEVDMCY 82
+SW +I AA+AQ ++ +
Sbjct: 209 TISWNSIAAAYAQNGHIEESF 229
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G V +GF ++ +V +SLI+ KCG+ +F + RN+++W A++AA A
Sbjct: 466 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 525
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
L V+ GF + V V ++L+ G +++ +F++MP ++++SW +++A+F +
Sbjct: 269 LVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 323
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ GF + ++ ++ KCGE +V KM R++ SW +I+A +
Sbjct: 567 GQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGR 626
Query: 75 E-WEVDMCYTF 84
+ ++C TF
Sbjct: 627 HGYFEEVCATF 637
>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C G + A+R G N+ V +++I F +CG V +FE+MPVR++
Sbjct: 312 LTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDI 371
Query: 63 VSWTAIIAAFAQEWEVDM 80
++WT +I A+ + VD+
Sbjct: 372 ITWTEMITAYMEFGLVDL 389
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A+++GF A + VG+S+IS KC D K F MP +VVSW
Sbjct: 551 CGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSW 610
Query: 66 TAIIAA 71
+IA
Sbjct: 611 NGLIAG 616
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G Q LA++ G+ V+V ++LI GKCG +F++MP R++
Sbjct: 210 LTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDI 269
Query: 63 VSWTAIIAAFAQ 74
SW +I++ +
Sbjct: 270 ASWNTMISSLVK 281
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-- 60
+ +CG + Q ++ GF +N + ++LI C KCG D +MF+ +
Sbjct: 444 INACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGG 503
Query: 61 NVVSWTAIIAAFAQ 74
N + T++I +A+
Sbjct: 504 NSIIQTSMICGYAR 517
>gi|326487167|dbj|BAJ89568.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 691
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q+ CLA++ G G++LI+ KCG+ + F+ M R+V
Sbjct: 403 LSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDV 462
Query: 63 VSWTAIIAAFAQEWEVDM 80
SW ++I AQ EVDM
Sbjct: 463 TSWNSLIHGHAQHGEVDM 480
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
R G Q LAVR+GFV + +VGS L+ +CG + +M +VV++T++++A
Sbjct: 114 RTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSAL 173
Query: 73 AQEWEVDM 80
+ E M
Sbjct: 174 CRSGEFGM 181
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+ +I G+Q LA++ G +++ V ++L+S G+ G + MF + ++VSWT
Sbjct: 306 GACESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWT 365
Query: 67 AIIAAFAQ 74
A I+A+ Q
Sbjct: 366 AAISAYFQ 373
>gi|326522859|dbj|BAJ88475.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 691
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q+ CLA++ G G++LI+ KCG+ + F+ M R+V
Sbjct: 403 LSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDV 462
Query: 63 VSWTAIIAAFAQEWEVDM 80
SW ++I AQ EVDM
Sbjct: 463 TSWNSLIHGHAQHGEVDM 480
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
R G Q LAVR+GFV + +VGS L+ +CG + +M +VV++T++++A
Sbjct: 114 RTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSAL 173
Query: 73 AQEWEVDM 80
+ E M
Sbjct: 174 CRSGEFGM 181
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+ +I G+Q LA++ G +++ V ++L+S G+ G + MF + ++VSWT
Sbjct: 306 GACESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWT 365
Query: 67 AIIAAFAQ 74
A I+A+ Q
Sbjct: 366 AAISAYFQ 373
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + R G Q L +SG ++ YV + LI CG++ YK+F KM R+V
Sbjct: 103 LKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDV 162
Query: 63 VSWTAIIAAFAQE 75
VSWT++I F +
Sbjct: 163 VSWTSMIDGFVDD 175
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q L +SGF +N++V SSLI KCG + YK+F + RNV
Sbjct: 273 ICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNV 332
Query: 63 VSWTAIIAAFAQ 74
V W A+I+ ++
Sbjct: 333 VLWNAMISGLSR 344
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A+++ NV+V ++L+ KCG D +FE MP R+VV+W+++ A + Q
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQ 243
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
G ++ + LI+ KCG ++F++MP R++VSW +I + Q E
Sbjct: 94 GLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGE 145
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
CG + G Q CL V+ GF A V VG++L+ KCG D +FE MP RNVV+
Sbjct: 109 CGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVT 168
Query: 65 WTAIIAAFAQ 74
WT+++ + Q
Sbjct: 169 WTSLLTGYVQ 178
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVS 64
C + + + Q ++ GF ++ V ++++ KCGE D + +F MP +NVVS
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVS 371
Query: 65 WTAIIAAFAQEWEVDM 80
WTA+I Q ++ +
Sbjct: 372 WTAMIGGCIQNADIPL 387
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 3 VTSCGS-TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C S T I G Q+ ++++ + + VGS+L++ + G +FE+ R+
Sbjct: 508 IDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRD 567
Query: 62 VVSWTAIIAAFAQ 74
+VSW ++I+ +AQ
Sbjct: 568 LVSWNSMISGYAQ 580
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G + +V+ G + V+V +SLI+ KCG + +F +M R++VSW ++A
Sbjct: 220 GRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGL 277
>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 752
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q Q LA + GF++ VG+++I+ G G + +MF M +N+
Sbjct: 276 ISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNL 335
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I+ +++
Sbjct: 336 ISWTALISGYSR 347
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++ G + V++GF N+ V +S+IS KCG D ++MF M R+ +SW A+I+
Sbjct: 488 SLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALIS 547
Query: 71 AFA 73
A+A
Sbjct: 548 AYA 550
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G Q C ++SGF NV+VG+SLI+ K G K+F+ M +++
Sbjct: 175 LQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDI 234
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T CG ++R G + + SGF N++ ++++S KC D YKMF++M R++
Sbjct: 149 LTLCGDNFDLRRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDL 208
Query: 63 VSWTAIIAAFAQ 74
V W II+ +AQ
Sbjct: 209 VCWNTIISGYAQ 220
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G L +NV V +SLIS KC + +FE + R +VS
Sbjct: 353 ACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVS 412
Query: 65 WTAIIAAFAQEWEVDMCYTF 84
W A+I +AQ ++ F
Sbjct: 413 WNAMILGYAQNGRLNEALNF 432
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R++R G +R+GF V + ++L+ KC +F+ M R VV+W ++I
Sbjct: 257 RSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMI 316
Query: 70 AA 71
A
Sbjct: 317 AG 318
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
L +R V+V ++L+ KCG K+F M R+V++W ++I A+
Sbjct: 470 LVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDAYG 522
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q A++ GF+ +++ +SL++ KCG D + F ++P R +
Sbjct: 493 LNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGI 552
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I +AQ
Sbjct: 553 VSWSAMIGGYAQ 564
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R++ G + +AV +GF ++ +V ++L+ KCG D ++F + RNV
Sbjct: 89 LKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNV 148
Query: 63 VSWTAIIAAFAQ 74
VSW A+ + + Q
Sbjct: 149 VSWNALFSCYVQ 160
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S S + I+ Q ++++SG ++ YV +SL+ GKC + K+FE+ ++
Sbjct: 392 LKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDL 451
Query: 63 VSWTAIIAAFAQ 74
V++T++I A++Q
Sbjct: 452 VAYTSMITAYSQ 463
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ ++++ L+ KC D + ++ MP +++++W A+I+ ++Q
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQ 362
>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella
moellendorffii]
gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella
moellendorffii]
Length = 643
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S R++ Q Q R GF + Y+G+ L+ GKCG D ++F+++ RN+ SW
Sbjct: 22 CASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRNIFSW 81
Query: 66 TAIIAAFA 73
T ++ A+A
Sbjct: 82 TIMLGAYA 89
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G A G+ + + V ++L+S GKCG + +F + RN
Sbjct: 120 LKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNR 179
Query: 63 VSWTAIIAAFAQ 74
VSW A++AA+AQ
Sbjct: 180 VSWNAMLAAYAQ 191
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +T + G + G ++ + VG +LI+ +CG + +F+ +P +N+
Sbjct: 323 LVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNL 382
Query: 63 VSWTAIIAAFA 73
VSW +I ++A
Sbjct: 383 VSWNVLIGSYA 393
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GT+ + SGF +N + ++L+S G G D +F+ + + VVSW A++ A+AQ
Sbjct: 231 GTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQ 290
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
+C ++ + G L SG + +G++LI+ GKCG +F M R N+V
Sbjct: 426 ACSASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLV 485
Query: 64 SWTAIIAAFAQEWEVDMCYTFI 85
+W +++AA + ++ C I
Sbjct: 486 TWNSMLAAACTKGGLEDCVEII 507
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +++ G + + SGF N++ + +++ KC + D Y MF++MP R++V W
Sbjct: 40 CGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCW 99
Query: 66 TAIIAAFAQ 74
+I+ +AQ
Sbjct: 100 NTMISGYAQ 108
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ TR +R G +R+GF + V V ++L+ KCG +F+ M R VVS
Sbjct: 140 AVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVS 199
Query: 65 WTAIIAAFAQEWEVD 79
W ++I + Q + +
Sbjct: 200 WNSMIDGYVQSGDAE 214
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
L +R NV+V ++L+ KCG K+F+ M R+V++W A+I +
Sbjct: 358 LVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYG 410
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q ++SG +A+V VG++L+S KCG K F +MP R +
Sbjct: 379 LSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTM 438
Query: 63 VSWTAIIAAFAQ 74
+SWT++I FA+
Sbjct: 439 ISWTSMITGFAR 450
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q L+++ G+ +++ + +S++ KCG I+ K+FE M N+
Sbjct: 267 LSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNL 326
Query: 63 VSWTAIIAAFAQ 74
V+W A+IA A+
Sbjct: 327 VTWNAMIAGHAK 338
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V++GF +++V + L++ KCG +K+F+ +P RNV +WT ++ + Q
Sbjct: 85 VKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 136
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 3 VTSCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+CG + ++ R G Q +SG +++VYV ++++ G G K+FE+MP RN
Sbjct: 65 VTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN 124
Query: 62 VVSWTAIIAAFAQEWE 77
VVSWT+++ ++ + E
Sbjct: 125 VVSWTSLMVGYSDKGE 140
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
L V SG N +G++L+S GK GE + ++ +MP R+VV+W A+I +A++ + D
Sbjct: 387 LVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 445
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
++SCG ++ G Q V+SG + + V +SLIS G G N+D +F++M R+
Sbjct: 167 ISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMG-NVDYANYIFDQMSERD 225
Query: 62 VVSWTAIIAAFAQEWEVDMCY 82
+SW +I AA+AQ ++ +
Sbjct: 226 TISWNSIAAAYAQNGHIEESF 246
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G V +GF ++ +V +SLI+ KCG+ +F + RN+++W A++AA A
Sbjct: 483 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 542
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
L V+ GF + V V ++L+ G +++ +F++MP ++++SW +++A+F +
Sbjct: 286 LVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 340
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ GF + ++ ++ KCGE +V KM R++ SW +I+A +
Sbjct: 584 GQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGR 643
Query: 75 E-WEVDMCYTF 84
+ ++C TF
Sbjct: 644 HGYFEEVCATF 654
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ ++ G + + SG NV+V SSL+ GKC +F++M V+N+
Sbjct: 271 LTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNL 330
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ + Q
Sbjct: 331 VSWTALLGGYCQ 342
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + C V+ +V S+L+ KCG Y++F +M VRN+++
Sbjct: 370 ACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLIT 429
Query: 65 WTAIIAAFAQ 74
W ++I FAQ
Sbjct: 430 WNSMIYGFAQ 439
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C + G Q+ A++SG + +VG+SL++ K G N+ + ++F+ + ++
Sbjct: 67 LQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKD 126
Query: 62 VVSWTAIIAAFAQ 74
++SWT++I + +
Sbjct: 127 LISWTSMITGYVK 139
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++R G + + + GF N + ++LI G+ D +F ++P +
Sbjct: 169 IKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDA 228
Query: 63 VSWTAIIAAFAQ 74
+ WT+II+AF +
Sbjct: 229 ICWTSIISAFTR 240
>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
[Solanum demissum]
Length = 819
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +R G +++V+ GS L+ CG D ++F++MP RN+V W A+I+A++Q
Sbjct: 465 GKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQ 524
Query: 75 EWEVDMCYT 83
+ + ++
Sbjct: 525 NGDAEATFS 533
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N+ G Q AV + V+ V VG++L+ KC + D ++F + RN V WTAII+
Sbjct: 360 NLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIIS 419
Query: 71 AFAQE 75
+ Q+
Sbjct: 420 IYVQK 424
>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
Group]
Length = 1111
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + + + A++ G V NV G+SL+ KCGE + +++F +P +++
Sbjct: 329 ISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDI 388
Query: 63 VSWTAIIAAFAQ 74
SW ++I+ +AQ
Sbjct: 389 FSWNSMISGYAQ 400
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF---VANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+ +C ++ G +A+R GF V +V VG+S++ KCG+ K+F+KM
Sbjct: 155 LQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVC 214
Query: 60 RNVVSWTAIIAAFAQ--EWE 77
R++ +W ++I + + EWE
Sbjct: 215 RDLGTWNSMIFGYCRSAEWE 234
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N+R G + +++R+GF + V+V +SL+ CG+ +K+FE MP R++V+W I+
Sbjct: 155 NVRVGEKIHSISIRNGFESLVFVQNSLMHMYAACGQYESAHKLFEFMPDRDLVAWNTAIS 214
Query: 71 AFA 73
FA
Sbjct: 215 GFA 217
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + V+ G N++ +SLI KCG D ++F++M +RNV
Sbjct: 248 LSACAELGALALGRRIHAYMVKVGLDENLHANNSLIDLYAKCGRIRDAQQVFDEMELRNV 307
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 308 VSWTSLIVGLA 318
>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q V++G + +VYVG++L+ F G G + K+FE+MP NVVSWT+++ ++
Sbjct: 215 GFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 273
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ GF ++++V ++ + GKCGE DV KM + R+ +SW +I+AFA+
Sbjct: 721 GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFAR 780
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N++ G L V+ G +NV + ++L++ + G + D +F+ M R+++SW +++A
Sbjct: 413 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMA 472
Query: 71 AFAQE 75
+ Q+
Sbjct: 473 CYVQD 477
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
L + +GF + VG++L++ GK G ++ K+ + MP + V+W A+I A+ E
Sbjct: 522 HALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 580
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V +GF ++ YV +SLI+ KCG+ +F+ + ++ ++W A++AA A
Sbjct: 628 VLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 679
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+SCG + G Q ++ GF +V V +SLIS + +F+ M +++
Sbjct: 305 SSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDII 364
Query: 64 SWTAIIAAFAQ 74
SW A+I+A+A
Sbjct: 365 SWNAMISAYAH 375
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA- 73
G Q +RSG +++V+ GS+L+ KCG + + F++MP RN +SW A+I+A+A
Sbjct: 461 GRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAH 520
Query: 74 --------QEWEVDMCYTF 84
+ +E +CY F
Sbjct: 521 YGQAKNAIKMFEGMLCYGF 539
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L R+ +NV+V +SL+ F KC ++ K+F +M R+ VS+ +IA +A
Sbjct: 260 GRQVHGLVARAT-SSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYA 317
>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G Q + ++ GFV NVYVG++LI GKCG + K+ E M ++ VSW
Sbjct: 144 CCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSW 203
Query: 66 TAIIAA 71
+II A
Sbjct: 204 NSIITA 209
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I G Q ++R+G+ ++ ++G++L+ KCG Y+++ K+ N+
Sbjct: 549 LAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNL 608
Query: 63 VSWTAIIAAFA 73
V A++ A+A
Sbjct: 609 VCHNAMLTAYA 619
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
IR G + +A+ G +N +VG +L+ KC + I F+++ R+ +W A+I+
Sbjct: 422 IRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISG 481
Query: 72 FAQ 74
+A+
Sbjct: 482 YAR 484
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S+ ++ G Q ++++GF + +V + L+ D + MF+KM ++N+ SWTA
Sbjct: 43 SSNSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTA 102
Query: 68 II 69
++
Sbjct: 103 VL 104
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +CG ++ G +V++ FV +V+VGS+L+ K G+ + +F++MP+R
Sbjct: 73 LALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLR 132
Query: 61 NVVSWTAIIAAFAQ 74
NVVSWTAIIA +
Sbjct: 133 NVVSWTAIIAGLVR 146
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + C ++ GF A +V ++L + KCG+ ++FE M R+V
Sbjct: 176 LKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDV 235
Query: 63 VSWTAIIAAFAQ 74
VSWT II + Q
Sbjct: 236 VSWTTIIMSNVQ 247
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CG+ + G Q + G N V S+LI+ KCG + K+F++ N+
Sbjct: 378 LSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNI 437
Query: 63 VSWTAIIAAFAQE 75
VSWTA+I +A+
Sbjct: 438 VSWTAMINGYAEH 450
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + I G Q +R G V ++ V +S+++ KC + +F+ + R++
Sbjct: 277 ISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDI 336
Query: 63 VSWTAIIAAFAQ 74
+SW+ +I+ +AQ
Sbjct: 337 ISWSTMISGYAQ 348
>gi|195644420|gb|ACG41678.1| hypothetical protein [Zea mays]
Length = 183
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C R + G Q V +G+ +Y+ + L+ +CG D + + + MP RNV
Sbjct: 42 ITECVGRRALLEGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNV 101
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 102 VSWTAMISGYSQ 113
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC I Q+ ++V++G ++YV ++L+ CG+N+ K+FE M VR+V
Sbjct: 116 LKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDV 175
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ + +
Sbjct: 176 VSWTGLISGYVK 187
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G L + + + V ++++ KC D KMF++MP ++++S
Sbjct: 216 ACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIIS 275
Query: 65 WTAIIAAFAQ 74
WT++I Q
Sbjct: 276 WTSMIGGLVQ 285
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+V++G++L+ KCG ++F MP +N+ +W A I A
Sbjct: 342 DVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLA 385
>gi|302760463|ref|XP_002963654.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
gi|300168922|gb|EFJ35525.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
Length = 580
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 5 SCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C S+ + G T ++ A R G + +VG++L+S GKCG +F +P+ NVV
Sbjct: 355 ACASSTALAEGKTIFEGAAAR-GLDRDTFVGTALVSMFGKCGRLDQARALFNNLPLPNVV 413
Query: 64 SWTAIIAAFAQEWE 77
SWT II A+AQ E
Sbjct: 414 SWTNIIVAYAQSGE 427
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G Q +RSGF N YV SSL+S GKC E ++F+++ RN+
Sbjct: 239 LKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNL 298
Query: 63 VSWTAIIAAFAQ 74
V W+A+I+ +A+
Sbjct: 299 VCWSAMISGYAR 310
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 10 RNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
R++ G V SG V +VYVGS+L+ KCG D K+F +MP RN+VSW A+
Sbjct: 218 RDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGAL 277
Query: 69 IAAFAQ 74
IA + Q
Sbjct: 278 IAGYVQ 283
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++ G RS N +G++L+ KCG + +FEK+P ++V
Sbjct: 313 LTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDV 372
Query: 63 VSWTAIIAAFA 73
WTA+I A
Sbjct: 373 YPWTAMINGLA 383
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + ++ G Q A+ GF +++V S+L+ KCGE D +F+++ RN+
Sbjct: 159 IKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNI 218
Query: 63 VSWTAIIAAFAQ 74
VSWT++I + Q
Sbjct: 219 VSWTSMITGYVQ 230
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + R G ++ G +NV+VG+S+I KCG+ K F++M +NV S
Sbjct: 372 ACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS 431
Query: 65 WTAIIAAFA 73
W+A++A +
Sbjct: 432 WSAMVAGYG 440
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++ GF ++ V ++L+ KCGE ++F+ M R+V+SW +IIA +AQ
Sbjct: 288 IKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQ 339
>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
Length = 631
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN-VVS 64
CG +R++ G + V +G ++++G+ LI GKCG D +FEK+ N VVS
Sbjct: 63 CGRSRSLPDGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEDARAVFEKIESPNSVVS 122
Query: 65 WTAIIAAFAQEWEVDMCYTF 84
WTA+I+ FA D+ F
Sbjct: 123 WTAMISGFALHGREDLALDF 142
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANV--YVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+C + ++ G + L + +G +++ + ++L++ G+ G+ D ++FEKM N+
Sbjct: 266 ACSNLNSLAAGKKLHELILDAGLDSSIKMVLATALVNMYGRYGQLEDALRVFEKMNHWNL 325
Query: 63 VSWTAIIAAFAQEWEV 78
V+WTA+IAAFAQ +V
Sbjct: 326 VAWTALIAAFAQHGDV 341
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + R+++ GT L S F + + VG++LI GKCG ++FEKM R++V
Sbjct: 164 ACAAARDVKHGTAIHELVESSEFGRSYLSVGTALIDMYGKCGRPELASRVFEKMERRDLV 223
Query: 64 SWTAIIAAFAQE 75
W A+I +Q+
Sbjct: 224 VWNAMITVCSQQ 235
>gi|255572347|ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533535|gb|EEF35275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 364
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C TQ VR GFVA+ +G++L+ K G+ KMF++M V+++
Sbjct: 110 LKACARVLAFSESTQLHSHIVRKGFVADALLGTTLLDLYAKTGDLDSAQKMFDEMIVKDI 169
Query: 63 VSWTAIIAAFAQ 74
SW A+I+ FAQ
Sbjct: 170 ASWNALISGFAQ 181
>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G Q + V++GF VG+S+I KCG + MFE MPVRN+
Sbjct: 80 LKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNL 139
Query: 63 VSWTAIIAAF 72
+SW A+IA +
Sbjct: 140 ISWNAMIAGY 149
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV--ANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ +C I+ G Q + GF+ N V +LI KCG+ ++F + +
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240
Query: 61 NVVSWTAIIAAFAQE 75
+V+SWTA+I +AQE
Sbjct: 241 HVISWTALILGYAQE 255
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
++ G Q A++ ++ V +S++ KCG + ++F +MP RNV+SWT +I
Sbjct: 293 VQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITG 352
Query: 72 FAQ 74
+ +
Sbjct: 353 YGK 355
Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GF ++ + + LI GKCG +F++M RNVVSWTA++ Q
Sbjct: 2 GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQ 50
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + ++ G Q A+ GF +++V S+L+ KCGE D +F+++ RN+
Sbjct: 83 IKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNI 142
Query: 63 VSWTAIIAAFAQ 74
VSWT++I + Q
Sbjct: 143 VSWTSMITGYVQ 154
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + R G ++ G +NV+VG+S+I KCG+ K F++M +NV S
Sbjct: 218 ACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS 277
Query: 65 WTAIIAAFA 73
W+A++A +
Sbjct: 278 WSAMVAGYG 286
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 10 RNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
+ IR G Q ++++G V NVYV ++L+ CG DV K+F++ P R++VSWT +
Sbjct: 124 QGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTL 183
Query: 69 IAAFAQ 74
I AF +
Sbjct: 184 IQAFTK 189
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
A+V+VG++L+ KC + YK+F++MPV+NVV+W A+I+ A +
Sbjct: 246 ADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQ 292
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + + G R+ +A+ +VG++L+ KCG + +++FE M R+V
Sbjct: 321 LNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDV 380
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
S+TA+I A E + +
Sbjct: 381 YSYTAMIFGLALHGEANWAF 400
>gi|410110007|gb|AFV61083.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
brasiliensis]
Length = 357
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 270 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 329
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 330 WNSIIXAYAQ 339
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ +++ C T V
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGBLERCITLFV 45
>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 921
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C G A++SG ++V VG+++I+ +CG+ F MP+R+ +SW
Sbjct: 385 CSGQNYAASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISW 444
Query: 66 TAIIAAFAQEWEVD 79
TA+I AF+Q ++D
Sbjct: 445 TAMITAFSQNGDID 458
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I+ GTQ + G ++V V +S+++ +CG+ + K+F+ + V+N+
Sbjct: 514 IRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVKNL 573
Query: 63 VSWTAIIAAFAQ 74
+SW A++AAFAQ
Sbjct: 574 ISWNAMMAAFAQ 585
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S +++ G +R + ++GS LI KCG ++F + +N
Sbjct: 281 LSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQ 340
Query: 63 VSWTAIIAAFAQ 74
VSWT I+ AQ
Sbjct: 341 VSWTCFISGVAQ 352
>gi|255588481|ref|XP_002534617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223524904|gb|EEF27768.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 458
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G C A++ G+ +V VGS+LI KCG+ MF+ +PVRN+++W A+I+ +A
Sbjct: 225 GMLIHCCAIKGGWDTSVVVGSALIDMYSKCGQVKSAESMFQSLPVRNLITWNAMISGYAH 284
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG ++ G C V+ V VG+ LI GKC + +F+K+ +++
Sbjct: 50 LSACGQLSMLQFGRSIHCKIVKCSSDCGVVVGNCLIDMYGKCASVKEATWVFDKLIDKDI 109
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
+SW ++IAA A+ +++ Y F
Sbjct: 110 ISWNSVIAACARNGRLELAYNF 131
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + L V++G ++ +V +SL+S GKCG + +K+F+ +P +NV
Sbjct: 115 LKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNV 174
Query: 63 VSWTAIIAAF 72
+WTAII+ +
Sbjct: 175 AAWTAIISGY 184
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G L R+ F+ N +G++LI KCG +++F M +++V
Sbjct: 256 ACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVV 315
Query: 65 WTAIIAAFAQEWEVDMCY 82
W A I+ A V +
Sbjct: 316 WNAAISGLAMSGHVKAAF 333
>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
Length = 859
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + + + A++ G V NV G+SL+ KCGE + +++F +P +++
Sbjct: 329 ISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDI 388
Query: 63 VSWTAIIAAFAQ 74
SW ++I+ +AQ
Sbjct: 389 FSWNSMISGYAQ 400
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF---VANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+ +C ++ G +A+R GF V +V VG+S++ KCG+ K+F+KM
Sbjct: 155 LQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVC 214
Query: 60 RNVVSWTAIIAAFAQ--EWE 77
R++ +W ++I + + EWE
Sbjct: 215 RDLGTWNSMIFGYCRSAEWE 234
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +R G + +A + GF +V+VG++L++F G CG D K+F++MP R+ VSW
Sbjct: 147 CSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSW 206
Query: 66 TAIIA 70
+I
Sbjct: 207 NTVIG 211
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+PV C T + C A++ G + +V VG++L+ GKCG K+F+++
Sbjct: 247 LPV--CAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDE 304
Query: 60 RNVVSWTAIIAAFA 73
RNV+SW AII +F+
Sbjct: 305 RNVISWNAIITSFS 318
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + +++ ++V++ +SLI K G + +F KM VRN+VSW A+IA FA+
Sbjct: 361 GMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFAR 420
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + IR G + L VR F +++V +SL+ +CG K+F + ++V
Sbjct: 550 VSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDV 609
Query: 63 VSWTAIIAAFAQEWEVD 79
SW +I + E+D
Sbjct: 610 ASWNTMILGYGMRGELD 626
>gi|357516795|ref|XP_003628686.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355522708|gb|AET03162.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 699
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 42/67 (62%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
CLA++SG ++++Y ++LI+ KC + ++F+KMP R+ VSW A+I+ + ++
Sbjct: 22 HCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADL 81
Query: 79 DMCYTFI 85
D + +
Sbjct: 82 DSTWQLL 88
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + ++ NV+ GS+L+ KCG D +F MP N VSW +IA +++
Sbjct: 119 GQQLHSVMIKMRLNENVFSGSALLDMYAKCGRVDDALVVFRYMPECNYVSWNTLIAGYSR 178
Query: 75 EWEVDMCY 82
++DM +
Sbjct: 179 VGDLDMAF 186
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 10 RNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
R++ G V SG V +VYVGS+L+ KCG D K+F +MP RN+VSW A+
Sbjct: 218 RDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGAL 277
Query: 69 IAAFAQ 74
IA + Q
Sbjct: 278 IAGYVQ 283
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++ G RS N +G++L+ KCG + +FEK+P ++V
Sbjct: 313 LTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDV 372
Query: 63 VSWTAIIAAFA 73
WTA+I A
Sbjct: 373 YPWTAMINGLA 383
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRN 61
+ +CG R++ G + C V +GF ++YVG+SL++ K G N+ + +M F++MPVR+
Sbjct: 150 IKACGDLRDVEFGWRVHCEVVITGFNLDIYVGNSLLAMYSKFG-NMKMARMVFDRMPVRD 208
Query: 62 VVSWTAIIAAF 72
+ SW +I+ +
Sbjct: 209 LTSWNTMISGY 219
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + GF A ++V ++LI KCG + +FE+MP +N+
Sbjct: 355 ACEQITAMEFGRSVHSYLSKKGFSATIFVATALIDMYAKCGNLACAHLVFEEMPEKNLFC 414
Query: 65 WTAIIAAFA 73
W+A+I+ +
Sbjct: 415 WSAMISGYG 423
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V N ++ +SLI KC +D K+FE M ++ VSW ++I+ +A+
Sbjct: 277 VFNHFLINSLIEMYCKCNSMVDARKLFEHMAWKDTVSWNSMISGYAR 323
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +N G C +++ + ++YVG L+ +CG+N D ++ F MP +V
Sbjct: 154 LKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDV 213
Query: 63 VSWTAIIAAFAQ 74
+ W+ +I+ FAQ
Sbjct: 214 IPWSFMISRFAQ 225
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q CL ++ + +V VG++LI KCG D MF+ + +R+
Sbjct: 356 LRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDK 415
Query: 63 VSWTAIIAAFA 73
VSW AII ++
Sbjct: 416 VSWNAIICGYS 426
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A+++G +V+V ++L++ KCG ++FE + RN VSW II ++ Q
Sbjct: 274 ALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQ 326
>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
Length = 1038
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 3 VTSCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+CG + ++ R G Q +SG +++VYV ++++ G G K+FE+MP RN
Sbjct: 166 VTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN 225
Query: 62 VVSWTAIIAAFAQEWE 77
VVSWT+++ ++ + E
Sbjct: 226 VVSWTSLMVGYSDKGE 241
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
++SCG ++ G Q ++SG + + V +SLIS G G N+D +F ++ R+
Sbjct: 268 ISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMG-NVDYANYIFNQISERD 326
Query: 62 VVSWTAIIAAFAQEWEVD 79
+SW +I+AA+AQ ++
Sbjct: 327 TISWNSIVAAYAQNGHIE 344
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G L V SG N +G++L+S GK G ++ +MP R+V
Sbjct: 470 LAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDV 529
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W A+I +A+ + D
Sbjct: 530 VAWNALIGGYAENEDPD 546
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G V +GF ++ +V +SLI+ KCG+ +F + R++++W AI+AA A
Sbjct: 584 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAH 643
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ GF + ++ ++ KCGE +V KM R++ SW +I+A +
Sbjct: 685 GQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGR 744
Query: 75 E-WEVDMCYTF 84
+ ++C TF
Sbjct: 745 HGYFEEVCETF 755
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G + + G L V+ GF + V V ++L+ G + + +F++MP ++++SW
Sbjct: 373 GDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWN 432
Query: 67 AIIAAFAQE 75
+++A+F +
Sbjct: 433 SLMASFVND 441
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ G+Q+ + ++ N++VG++L+ KCG D ++FE M R+
Sbjct: 435 LSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDN 494
Query: 63 VSWTAIIAAFAQE 75
VSW II + Q+
Sbjct: 495 VSWNTIIGGYVQD 507
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q CL+V+ G ++ GSSLI KCG D K+F MP +V
Sbjct: 536 LKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSV 595
Query: 63 VSWTAIIAAFAQ 74
VS A+IA ++Q
Sbjct: 596 VSMNALIAGYSQ 607
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ G N+ G A++ G +N+YVGSSL+S KC + K+FE + RN
Sbjct: 334 LSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERND 393
Query: 63 VSWTAIIAAFAQEWE 77
V W A+I +A E
Sbjct: 394 VLWNAMIRGYAHNGE 408
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ N+ G Q C ++ G N Y G +L+ KC D ++F+ + N
Sbjct: 167 LSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNT 226
Query: 63 VSWTAIIAAFAQ 74
V WT + + + +
Sbjct: 227 VCWTCLFSGYVK 238
>gi|15228064|ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g36980, mitochondrial; Flags: Precursor
gi|4883614|gb|AAD31583.1| hypothetical protein [Arabidopsis thaliana]
gi|330254236|gb|AEC09330.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 625
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PVR 60
+++C S N++ G + Q L +RSGF A++ V +SLI GKC + + K+F M R
Sbjct: 77 LSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCDSR 136
Query: 61 NVVSWTAIIAAF--AQEWEVDM 80
N V+W +++ A+ A+++E +
Sbjct: 137 NEVTWCSLLFAYMNAEQFEAAL 158
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + CL + GF YVG++L++ KCG+ + + F + +++VSW ++ AF
Sbjct: 356 GKMIHGCL-IHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFG 414
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
+S+I C K GE ++F P +N+V+WT +I + + + + F V
Sbjct: 275 NSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFV 326
>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
Length = 993
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 3 VTSC---GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
VT+C G G L R+G + NVY+G++L+ G G ++ ++F +MP
Sbjct: 48 VTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQ 107
Query: 60 RNVVSWTAIIAAFA 73
RNVVSWTAI+ A +
Sbjct: 108 RNVVSWTAIMVALS 121
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ CG+ + G Q V SG + +V V +SLI+ G D ++F++M R+
Sbjct: 152 VSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDR 211
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
+SW A+I+ ++ E C+
Sbjct: 212 ISWNAMISMYSHEEVYSKCF 231
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
G ++G +++ Y+ +SLI+ CG+ +F ++ ++V+SW AIIAA
Sbjct: 469 GMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAA 525
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C S+ + G+ L V SG +V + ++L++ G+ + +F M R+V
Sbjct: 253 VSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDV 312
Query: 63 VSWTAIIAAFAQ 74
+SW +I+++ Q
Sbjct: 313 ISWNTMISSYVQ 324
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + ++ + +G+SL++ KC D ++FE MP +VVS
Sbjct: 357 ACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVS 416
Query: 65 WTAIIAAFA 73
+ +A
Sbjct: 417 CNVLTGGYA 425
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+ V+SGF +N+YVG+S+I+ C D K+F +M R+V SWT+++ +A+ E+D
Sbjct: 385 MVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMD 443
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 4 TSCGSTRNIRG-GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
T+C +RG G + V+ G+ ++++VG+SL++ +D ++F++MP R+V
Sbjct: 164 TACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDV 223
Query: 63 VSWTAIIAAFAQEWE 77
++WT+++ +A E
Sbjct: 224 ITWTSVVKGYAMRGE 238
>gi|297734800|emb|CBI17034.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRN 61
+++CG N G Q LA+++ F + VYVG++LI +C CG + + ++E M RN
Sbjct: 16 ISACGGDDNC--GRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRN 73
Query: 62 VVSWTAIIAAF 72
+VSW ++IA F
Sbjct: 74 LVSWNSMIAGF 84
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLI-SFCGKCGENIDVYKMFEKMPVR-NVV 63
CG + Q QCL +++GF+ + V ++L+ ++ GE D Y++F ++ R +VV
Sbjct: 120 CGMGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVV 179
Query: 64 SWTAIIAAFAQ 74
SWT IIAAFA+
Sbjct: 180 SWTGIIAAFAE 190
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R Q ++ GF ++ + ++LI C +CG ++F+KM R+
Sbjct: 219 LKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDT 278
Query: 63 VSWTAIIAAFA 73
VSW +++ A+A
Sbjct: 279 VSWNSMLKAYA 289
>gi|125570597|gb|EAZ12112.1| hypothetical protein OsJ_01994 [Oryza sativa Japonica Group]
Length = 384
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C +T N+ QC AVR G + + ++LI KCG + +F++M RNV
Sbjct: 140 LTACSATANLMYSMLVQCKAVRHGSTSQTILCNALIDMYAKCGRTMAARIVFDQMACRNV 199
Query: 63 VSWTAIIAAFA 73
VSW+++I A++
Sbjct: 200 VSWSSMIDAYS 210
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISF-CGKCGENIDVYKMFEKMPVRN 61
V SC I G+Q ++ GF +VYV +SL+ KCG+ K+F++MP +N
Sbjct: 74 VKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKN 133
Query: 62 VVSWTAIIAAFAQEWEVD 79
+V+W+ +I+ +AQ D
Sbjct: 134 LVTWSTMISGYAQNNHFD 151
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+ +++G N+ +G++L+ +CG +FE +P R+ +SWTA+IA A
Sbjct: 172 MVIKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLA 224
>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
mitochondrial-like [Vitis vinifera]
Length = 743
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ G+ + G Q+ CL +++ F ++ + +SLIS KCGE D Y +F KM R+++S
Sbjct: 474 AAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLIS 533
Query: 65 WTAIIAAFAQ 74
W ++I F+
Sbjct: 534 WNSMIMGFSH 543
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
NV +S+IS + G + Y +F+KMP RNVVSWTA+I FA
Sbjct: 230 NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFA 273
Score = 41.2 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
NV ++++S +CG D + FE+MP RNVVSWT+++ A
Sbjct: 106 NVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLA 149
>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25970
gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 701
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
S + G Q L ++ G+ NVYVGSSL+ KC D ++ F+++ N VSW
Sbjct: 112 ASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWN 171
Query: 67 AIIAAFAQEWEVDMCY 82
A+IA F Q ++ +
Sbjct: 172 ALIAGFVQVRDIKTAF 187
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
SC ++ G Q LA +SGFV+N +V SSLI KCG K F+++ + + V
Sbjct: 417 SCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTV 476
Query: 64 SWTAIIAAFAQ 74
+W A+I +AQ
Sbjct: 477 AWNAMILGYAQ 487
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
C A++ G ++++YV + ++ K G +F++MP R+ VSW +I+ +
Sbjct: 23 HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGY 76
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ + L + GF ++ VG++L+S KCG D +FEKM RNV
Sbjct: 537 LNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNV 596
Query: 63 VSWTAIIAAFAQE 75
+SW AII AQ
Sbjct: 597 ISWNAIIGGSAQH 609
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ + G + ++GF +++ V ++LIS +CG D +F+KM ++V
Sbjct: 335 LNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDV 394
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I A+
Sbjct: 395 ISWTAMIGGLAK 406
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S + G + A+++G + +V V + +++ KCG + ++F+KM ++V
Sbjct: 133 LSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192
Query: 63 VSWTAIIAAFA 73
VSWT I +A
Sbjct: 193 VSWTITIGGYA 203
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + V +G + +VG++L++ CG D ++F++M R++
Sbjct: 436 LNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDI 495
Query: 63 VSWTAIIAAFA 73
V++ A+I +A
Sbjct: 496 VAYNAMIGGYA 506
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
++ G + +G ++ VG++L+ KCG D ++FEK+ R++++W +I
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302
Query: 72 FAQE--WE 77
A+ WE
Sbjct: 303 LAEGGYWE 310
>gi|297794357|ref|XP_002865063.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310898|gb|EFH41322.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 532
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C ++ G Q C+A+R+GFV+++ + + L+ GKCG+ + +F + ++V
Sbjct: 288 LAGCSDNSDLWIGKQIHCVALRNGFVSDIKLCNGLMDMYGKCGQIVQARTLFRAISSKSV 347
Query: 63 VSWTAIIAAFA 73
VSWT++I A+A
Sbjct: 348 VSWTSMIDAYA 358
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ G ++LI+ K G +D ++FE + ++VVSW A+++ F +
Sbjct: 103 GRQVHALMIKQGAETGTISKTALINMYSKYGHLVDSVRVFESVEEKDVVSWNALLSGFLR 162
>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 609
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ R ++ G + + +G +NV V SSL+ GKCG + ++F M +N
Sbjct: 272 LTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNS 331
Query: 63 VSWTAIIAAFAQEWE 77
VSW+A++ + Q E
Sbjct: 332 VSWSALLGGYCQNGE 346
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G + VR G NV V S+LI GK G +++ KM +RN+
Sbjct: 369 LKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNM 428
Query: 63 VSWTAIIAAFAQ 74
++W A+++A AQ
Sbjct: 429 ITWNAMLSALAQ 440
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +R G + + + GF N ++ S+L G E +D ++F++MP +V
Sbjct: 170 VKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDV 229
Query: 63 VSWTAIIAAFAQ 74
+ WTA+++AF++
Sbjct: 230 ICWTAVLSAFSK 241
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C + G Q+ V+SG + VG+SL+S K G + + ++F+ V++
Sbjct: 68 LQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKD 127
Query: 62 VVSWTAIIAAF 72
+SWT++++ +
Sbjct: 128 AISWTSMMSGY 138
>gi|413924724|gb|AFW64656.1| pentatricopeptide repeat protein PPR868-14 isoform 1 [Zea mays]
gi|413924725|gb|AFW64657.1| pentatricopeptide repeat protein PPR868-14 isoform 2 [Zea mays]
gi|413924726|gb|AFW64658.1| pentatricopeptide repeat protein PPR868-14 isoform 3 [Zea mays]
Length = 522
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C +SG V ++ VGS+L+ KCG D ++F +M RNV++WT++I + +
Sbjct: 287 GEQVHCQGTKSGLVLDIKVGSALVDMYAKCGRVEDGRRIFNQMAERNVITWTSMIDGYGK 346
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + ++ G Q A+ GF ++++V S+LI KCG+ + +F+++P RN+
Sbjct: 89 IKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNI 148
Query: 63 VSWTAIIAAFAQ 74
V+WT++I + Q
Sbjct: 149 VTWTSLITGYVQ 160
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G ++ G+V NV + +S+I KCG+ F+ M +NV S
Sbjct: 303 ACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRS 362
Query: 65 WTAIIA-----AFAQEWEVDMCYTFI 85
WTA+IA FA+E +D+ Y I
Sbjct: 363 WTAMIAGYGMHGFARE-ALDVFYQMI 387
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C N +A++ G + V ++L+ KCGE K+F+ M ++V
Sbjct: 199 LSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDV 258
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA +AQ
Sbjct: 259 VSWNSMIAVYAQ 270
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S + GG Q LAV+ GF +V GS+L+ KC + + F MP +N
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240
Query: 63 VSWTAIIAAFAQ 74
VSW+AIIA Q
Sbjct: 241 VSWSAIIAGCVQ 252
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q ++ ++ Y+ S+L+ KCG D +FEK P R+ V+
Sbjct: 540 TCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVT 599
Query: 65 WTAIIAAFAQ 74
W A++ +AQ
Sbjct: 600 WNAMVCGYAQ 609
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q L+++S +N+ V ++++ GKCG ++ +FE+M R+ VS
Sbjct: 371 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS 430
Query: 65 WTAIIAAFAQ 74
W AIIAA Q
Sbjct: 431 WNAIIAAHEQ 440
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC +R G+Q A+++ F +V +G++ + KC D K+F +P N+ S
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343
Query: 65 WTAIIAAFAQ 74
+ AII +A+
Sbjct: 344 YNAIIVGYAR 353
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + G Q + + F V+V + LI KC + +K+F+ MP R+ VSW
Sbjct: 52 CSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSW 111
Query: 66 TAIIAAFA 73
A++ +A
Sbjct: 112 NAMLFGYA 119
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
++S + +VG +LI KCG K+ +++ + VVSW AII+ F+
Sbjct: 457 IKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFS 507
>gi|255551991|ref|XP_002517040.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543675|gb|EEF45203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 23 VRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V SG V +VY+GSSL+ KCG D K+F +MPV+N+V W+A+IA + Q
Sbjct: 223 VESGRVKWDVYIGSSLLDMYCKCGYCDDACKLFNEMPVKNIVCWSALIAGYVQ 275
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
R+ N +G++LI KCG + Y +F K+ ++NV +WTA+I A
Sbjct: 326 RNSLEMNSILGTALIDMYAKCGCISEAYVVFNKLHIKNVYTWTAMINGLA 375
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ N+ G + L V+ G NVYV ++L+S KCG D ++FE+M N
Sbjct: 145 LSACGTLLNMESGRKCHTLIVKIGLDNNVYVSNALLSVYSKCGLVRDAVRLFEEMQEPNE 204
Query: 63 VSWTAIIAAFAQ 74
V++TA+++ F Q
Sbjct: 205 VTYTAMMSGFTQ 216
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C ++ G Q + GFV +VYVGS+L+ KCGE + + F+ M +N
Sbjct: 525 LSCCAKLSSLIHGKQIHAQIAKEGFVNDVYVGSALVDMYCKCGEVGEARQFFDIMSSKNT 584
Query: 63 VSWTAIIAAFAQ 74
V+W +I +AQ
Sbjct: 585 VTWNEMIHGYAQ 596
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q ++ ++ F ++YV S LI KCG+ +F+K+ ++
Sbjct: 424 LSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSKCGKMDIADCIFKKISKQDT 483
Query: 63 VSWTAIIAAFA 73
V W ++IA +
Sbjct: 484 VCWNSMIAGLS 494
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
S GS RN G + LA++ GF +++++ +SL+ K G+ ++F +P +VVS
Sbjct: 260 SDGSLRNALGKLAHG-LAIKLGFESDLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSVVS 318
Query: 65 WTAIIAAFAQE 75
W +IA + Q+
Sbjct: 319 WNVMIAGYGQK 329
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
N+Y +++++ K G + +++F +MP RN+VSW +I+A +
Sbjct: 71 NIYSWNAILTEYCKAGNLQNAHRLFSEMPERNIVSWNNLISALVR 115
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + G R G + ++ + LI F KC + +F +MP +N+
Sbjct: 13 LQSCIDKKAHLSGKLLHARIFRIGLSTDTFLLNRLIEFYFKCKNMGYAHNLFHQMPHKNI 72
Query: 63 VSWTAIIAAFAQ 74
SW AI+ + +
Sbjct: 73 YSWNAILTEYCK 84
>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
Length = 1490
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + I G++ +AV+ GF+ +V VG+SL+ KCG+ D K+F+ + ++V
Sbjct: 359 VSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDV 418
Query: 63 VSWTAIIAAFAQ 74
+W ++I + Q
Sbjct: 419 YTWNSMITGYCQ 430
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+V+V + L+S KCG +D K+F+ M RN+ +W+A+I A+++E
Sbjct: 114 DVFVETKLLSMYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSRE 159
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ G + ++ G + + V +S+++ KCGE K F +M R+VV+W
Sbjct: 191 CANCGDVETGKLIHSVVIKLGMSSCLRVSNSILAVYAKCGEWDFATKFFRRMKERDVVAW 250
Query: 66 TAIIAAFAQ 74
+++ A+ Q
Sbjct: 251 NSVLLAYCQ 259
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT+ G+ +++ G ++ C ++ G N Y+ ++L+ KCG D +K F+ R+V
Sbjct: 562 VTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621
Query: 63 VSWTAIIAAFAQEWE 77
V W ++I+++A E
Sbjct: 622 VCWNSVISSYANHGE 636
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + GG Q +R G + + + LI KCG I +K+F MP +N+
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315
Query: 63 VSWTAIIAAFAQ 74
+SWT +++ + Q
Sbjct: 316 ISWTTLLSGYKQ 327
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAA 71
Q Q V+SGF +VYVG+ LI F K G NID ++ F+ +P ++ V+WT +I+
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDG-NIDYARLVFDALPEKSTVTWTTMISG 223
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S + GTQ +++ + YV +SLI KC D K+F+ +V
Sbjct: 357 LTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADV 416
Query: 63 VSWTAIIAAFAQ---EWEV 78
V + A+I +++ +WE+
Sbjct: 417 VLFNAMIEGYSRLGTQWEL 435
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
G + Y+ + LI+ + G + K+FEKMP RN+VSW+ +++A
Sbjct: 74 GLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSA 119
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TS G ++ I G L + G +++ GS+LI C D +F++M V+++
Sbjct: 467 LTSLGLSKQIHG------LMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 63 VSWTAIIAAFAQEWE 77
V W ++ A + Q+ E
Sbjct: 521 VIWNSMFAGYVQQSE 535
>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
Length = 822
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + + + A++ G V NV G+SL+ KCGE + +++F +P +++
Sbjct: 292 ISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDI 351
Query: 63 VSWTAIIAAFAQ 74
SW ++I+ +AQ
Sbjct: 352 FSWNSMISGYAQ 363
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF---VANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+ +C ++ G +A+R GF V +V VG+S++ KCG+ K+F+KM
Sbjct: 118 LQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFDKMVC 177
Query: 60 RNVVSWTAIIAAFAQ--EWE 77
R++ +W ++I + + EWE
Sbjct: 178 RDLGTWNSMIFGYCRSAEWE 197
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S N+ G C + SG + +G++L+ GKCG+ ++ F+ MP++NVV+
Sbjct: 224 ACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVT 283
Query: 65 WTAIIAAFAQEWEVD 79
WT+++ A A+ VD
Sbjct: 284 WTSMLCAQAKHGSVD 298
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + R + + V+ GFV ++V ++L+ F G D + F +M RNV
Sbjct: 121 LKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNV 180
Query: 63 VSWTAIIAAFAQEWEV-DMCYTF 84
VSW +I +AQ EV + C F
Sbjct: 181 VSWNTMIGGYAQAGEVSEACALF 203
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++CG ++ G C VR F V + +SL+ +CG+ +F +MP +N
Sbjct: 354 LSACGQNGDLASGKMIHCY-VRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKN 412
Query: 62 VVSWTAIIAAFAQEWEVDMCYTF 84
V+SW II A A TF
Sbjct: 413 VISWNVIIGALAMHGRAQETVTF 435
>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
Length = 923
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 3 VTSC---GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
VT+C G G L R+G + NVY+G++L+ G G ++ ++F +MP
Sbjct: 48 VTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQ 107
Query: 60 RNVVSWTAIIAAFA 73
RNVVSWTAI+ A +
Sbjct: 108 RNVVSWTAIMVALS 121
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ CG+ + G Q V SG + +V V +SLI+ G D ++F++M R+
Sbjct: 152 VSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDR 211
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
+SW A+I+ ++ E C+
Sbjct: 212 ISWNAMISMYSHEEVYSKCF 231
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
G ++G +++ Y+ +SLI+ CG+ +F ++ ++V+SW AIIAA
Sbjct: 469 GMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAA 525
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C S+ + G+ L V SG +V + ++L++ G+ + +F M R+V
Sbjct: 253 VSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDV 312
Query: 63 VSWTAIIAAFAQ 74
+SW +I+++ Q
Sbjct: 313 ISWNTMISSYVQ 324
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + ++ + +G+SL++ KC D ++FE MP +VVS
Sbjct: 357 ACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVS 416
Query: 65 WTAIIAAFA 73
+ +A
Sbjct: 417 CNVLTGGYA 425
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++N+ + S F + ++ +SLI KCG ++ K+F++M +++
Sbjct: 58 ITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDM 117
Query: 63 VSWTAIIAAFAQ 74
VSWT++IA +AQ
Sbjct: 118 VSWTSLIAGYAQ 129
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ + +VYVGS+L+ +CG +F+K+ +N VSW A+I+ FA+
Sbjct: 171 GRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFAR 230
Query: 75 E 75
+
Sbjct: 231 K 231
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ G++L+ K G ID K+F+++ +++V+W ++ AFAQ
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQ 331
>gi|302796940|ref|XP_002980231.1| hypothetical protein SELMODRAFT_112424 [Selaginella moellendorffii]
gi|300151847|gb|EFJ18491.1| hypothetical protein SELMODRAFT_112424 [Selaginella moellendorffii]
Length = 223
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC R++ G Q A SG ++ +V SSL++ KCG ++ + F+++P +
Sbjct: 37 LKSCSRARDVESGRQIHANARESGVDSDSHVASSLVAMYMKCGSVVEAQQAFDRIPRPDA 96
Query: 63 VSWTAIIAAFAQEWEVDM 80
V W A+I+ +A+ E ++
Sbjct: 97 VCWNALISGYAENGEAEV 114
>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
Length = 664
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ G+ + G Q+ CL +++ F ++ + +SLIS KCGE D Y +F KM R+++S
Sbjct: 395 AAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLIS 454
Query: 65 WTAIIAAFAQ 74
W ++I F+
Sbjct: 455 WNSMIMGFSH 464
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
NV +S+IS + G + Y +F+KMP RNVVSWTA+I FA
Sbjct: 230 NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFA 273
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
NV ++++S +CG D + FE+MP RNVVSWT+++ A
Sbjct: 106 NVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLA 149
>gi|302820681|ref|XP_002992007.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
gi|300140249|gb|EFJ06975.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
Length = 947
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + A+ GF ++ +G++L++ GKCG + ++F MPVRN VS
Sbjct: 750 TCADCNALVEGKIFHARAMELGFGFDIILGNALLNMYGKCGSLREANRVFAAMPVRNSVS 809
Query: 65 WTAIIAAFAQEWEVDM 80
W +I A+AQ V +
Sbjct: 810 WNTLIVAYAQNGHVKL 825
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK-MPVRN 61
+ +C ++ ++ G + A G +NV V +SLI GKC + +F + + +R+
Sbjct: 545 IDACANSMDLASGIVFHRRAAEVGMDSNVVVANSLIKMYGKCKRLEEAMSVFNRILGIRD 604
Query: 62 VVSWTAIIAAFAQ 74
+VSW A+I+AFAQ
Sbjct: 605 LVSWNALISAFAQ 617
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G + +V G N +V + LI+ GKCG + K+ ++M NV SWT ++AA
Sbjct: 45 LEAGKRIHRHSVECGMGKNRFVENLLINMYGKCGALEEARKILDRMEDSNVFSWTIMLAA 104
Query: 72 FAQEWEVD 79
+AQ +D
Sbjct: 105 YAQNGHLD 112
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
TR+ R + + +G + + + L+ GKCG+ + + FEK+ +NVVSW+
Sbjct: 242 TRDARVCEEIHLQIIETGLEKDDKLLNLLVRSYGKCGDMEKMKESFEKLDEKNVVSWSGT 301
Query: 69 IAAFAQE---WE 77
IAAF+Q WE
Sbjct: 302 IAAFSQNGYFWE 313
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++ G ++ G + + GF+ + V + ++L+S G+C E +F+++ ++
Sbjct: 134 ISALGCCKSFSRGQWFHSRIKQEGFLPDDVMIQNALVSLYGRCCEVDQARSVFDEICNKD 193
Query: 62 VVSWTAIIAAFAQEWEVD 79
+VSWTA+I+AF Q D
Sbjct: 194 LVSWTAMISAFVQNGHPD 211
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVVSWTAIIAAFAQ 74
+ SG+ +NV V +SL++ GKC + ++F M R N +SW++++AA+AQ
Sbjct: 356 IESGYGSNVAVCNSLVNMYGKCHSLGNAKEVFWSMEERKNEISWSSLVAAYAQ 408
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVG---SSLISFCGKCGENIDVYKMFEKMPVRN 61
+CG R + +Q + +G +V V ++L++ +C D K+F M ++
Sbjct: 440 ACGDLRASKQSSQIHARVLEAGLERDVVVANALTALLNMYARCHSLEDARKVFAGMCRKD 499
Query: 62 VVSWTAIIAAFAQ 74
+ W +++AA+AQ
Sbjct: 500 AICWNSLLAAYAQ 512
>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
[Vitis vinifera]
Length = 656
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F +N +V + LI+ KCG+ D K+F MP RN VSW ++IAAFA+
Sbjct: 377 GKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFAR 436
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
+ V +SL+S +CGE D K+F+ MP+++ +SW + I+ +++M +
Sbjct: 89 IVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGF 140
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G+ + VG++LI+ +CG ++F++M +NVV+WTA+I+ +Q
Sbjct: 186 GYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 234
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + IR G Q L + G ++ + S+L+ KCG D +K+FE +
Sbjct: 264 LMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDE 323
Query: 63 VSWTAIIAAFAQ 74
VS T I+ AQ
Sbjct: 324 VSMTVILVGLAQ 335
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C R++ S F +V++ +SLI KCG D ++F+ MP R++
Sbjct: 71 ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130
Query: 63 VSWTAIIAAFAQ 74
SWT++IA +AQ
Sbjct: 131 CSWTSLIAGYAQ 142
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L V+ + +VYVGS+L+ +CG +F+++ +N VSW A+IA FA+
Sbjct: 184 GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 243
Query: 75 E 75
+
Sbjct: 244 K 244
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 35/52 (67%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SG + +VG++++ K G ID K+F+++ ++VV+W +++ AFAQ
Sbjct: 293 IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQ 344
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C R++ S F +V++ +SLI KCG D ++F+ MP R++
Sbjct: 71 ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130
Query: 63 VSWTAIIAAFAQ 74
SWT++IA +AQ
Sbjct: 131 CSWTSLIAGYAQ 142
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L V+ + +VYVGS+L+ +CG +F+++ +N VSW A+IA FA+
Sbjct: 184 GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 243
Query: 75 E 75
+
Sbjct: 244 K 244
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 35/52 (67%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SG + +VG++++ K G ID K+F+++ ++VV+W +++ AFAQ
Sbjct: 293 IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQ 344
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +R G + +GF ++VYV ++L+SF GKCG + K+F+KM R+V
Sbjct: 118 IKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSV 177
Query: 63 VSWTAIIAAFAQ 74
V+W ++I+ + Q
Sbjct: 178 VTWNSMISGYEQ 189
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
AV +G NV +G+SLI+ +CG ++F+ M RNVV+WTA+I+ +
Sbjct: 238 AVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYG 289
>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
Length = 598
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
S + G Q L ++ G+ NVYVGSSL+ KC D ++ F+++ N VSW
Sbjct: 112 ASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWN 171
Query: 67 AIIAAFAQEWEVDMCY 82
A+IA F Q ++ +
Sbjct: 172 ALIAGFVQVRDIKTAF 187
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
SC ++ G Q LA +SGFV+N +V SSLI KCG K F+++ + + V
Sbjct: 314 SCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTV 373
Query: 64 SWTAIIAAFAQ 74
+W A+I +AQ
Sbjct: 374 AWNAMILGYAQ 384
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
C A++ G ++++YV + ++ K G +F++MP R+ VSW +I+ +
Sbjct: 23 HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGY 76
>gi|48716412|dbj|BAD23021.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|50251414|dbj|BAD28452.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 727
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +CGS + + +AVRSG + VG++L+ GKCGE ++F+ MPV++V
Sbjct: 437 VEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGKCGELGASARVFDTMPVKDV 496
Query: 63 VSWTAIIAAFA 73
++W ++I A
Sbjct: 497 LTWNSMIGALG 507
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++R G +A R G +++V +SL+ KC + K+F+ + V+NVVS
Sbjct: 239 ACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDMYAKCLDLRSARKVFDLIAVKNVVS 298
Query: 65 WTAIIAAFAQ 74
W +++
Sbjct: 299 WNTMLSGLVH 308
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++L+ GKCG DV ++F+ M RNV++W+ +IAA A
Sbjct: 368 NALLDAYGKCGLVEDVLRLFQGMRERNVITWSTVIAACAH 407
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC ++ G V G ++ V S+L+ KCG +D +FE MP+RNV
Sbjct: 329 VSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNV 388
Query: 63 VSWTAIIAAFAQEWEV 78
++W A+I +AQ +V
Sbjct: 389 ITWNAMILGYAQNGQV 404
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++R G Q V + N +V +++ KCG+ +F+ M +NV
Sbjct: 162 LQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNV 221
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSW +I+ + + + C
Sbjct: 222 VSWNLMISGYVKMGNPNEC 240
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C ++ + G Q V SG +N+ + +SL++ GKC + K+F+ M +R
Sbjct: 63 IALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLR 122
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWTA++A +AQ
Sbjct: 123 DVVSWTAMLAVYAQ 136
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + + G A SGFV ++ +G+++I+ GKCG D +F++MP + ++
Sbjct: 576 ACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLI 635
Query: 64 SWTAIIAAFAQ 74
SW ++I A+A
Sbjct: 636 SWNSLIVAYAH 646
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + + G + + G + V VG+S+I+ GKCG+ +FE MP ++ V
Sbjct: 370 ACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDV 429
Query: 64 SWTAIIAA 71
SW A+I A
Sbjct: 430 SWNAVINA 437
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V C + ++ G + S F ++ + +SLIS G+CG + E M R+V
Sbjct: 267 VEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDV 326
Query: 63 VSWTAIIAAFAQ---EWE 77
V+W A++ A AQ WE
Sbjct: 327 VAWNAMVTACAQNGDNWE 344
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CG +++ Q A GF N VG+S+++ +CG +D K F+ + + +V
Sbjct: 472 ACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLV 531
Query: 64 SWTAIIAAFAQ 74
+W+ I+AA+AQ
Sbjct: 532 AWSIILAAYAQ 542
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V C R + G + + G + +G++L+ G CG D+ +F +M +V
Sbjct: 166 VDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSV 225
Query: 63 VSWTAIIAAFAQ 74
+ WT +IA +Q
Sbjct: 226 LLWTTMIAGCSQ 237
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + G +R G + YVG+SLI KCG D K+F+KM VR++
Sbjct: 114 LKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDM 173
Query: 63 VSWTAIIAAFAQEWEV 78
SW A+IA + +E E+
Sbjct: 174 ASWNALIAGYMKEGEI 189
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S + GG Q LAV+ GF +V GS+L+ KC + + F MP +N
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240
Query: 63 VSWTAIIAAFAQ 74
VSW+AIIA Q
Sbjct: 241 VSWSAIIAGCVQ 252
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q ++ ++ Y+ S+L+ KCG D +FEK P R+ V+
Sbjct: 587 TCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVT 646
Query: 65 WTAIIAAFAQ 74
W A++ +AQ
Sbjct: 647 WNAMVCGYAQ 656
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q L+++S +N+ V ++++ GKCG ++ +FE+M R+ VS
Sbjct: 385 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS 444
Query: 65 WTAIIAAFAQ 74
W AIIAA Q
Sbjct: 445 WNAIIAAHEQ 454
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC +R G+Q A+++ F +V +G++ + KC D K+F +P N+ S
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343
Query: 65 WTAIIAAFAQ 74
+ AII +A+
Sbjct: 344 YNAIIVGYAR 353
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + G Q + + F V+V + LI KC + +K+F+ MP R+ VSW
Sbjct: 52 CSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSW 111
Query: 66 TAIIAAFA 73
A++ +A
Sbjct: 112 NAMLFGYA 119
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + ++S + +VG +LI KCG K+ +++ + V
Sbjct: 484 LKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTV 543
Query: 63 VSWTAIIAAFA 73
VSW AII+ F+
Sbjct: 544 VSWNAIISGFS 554
>gi|255541023|ref|XP_002511576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550691|gb|EEF52178.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R++RGG Q C A + G A+++VG++LIS G+CG ++F +M NV++W A+I
Sbjct: 120 RSLRGGIQLHCQAWKYGLNAHLFVGTTLISMYGECGCVGYARQVFGEMHEPNVIAWNAVI 179
Query: 70 AA 71
AA
Sbjct: 180 AA 181
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G V+SG V+V SSL GKCG D K+F+++P RNVV+
Sbjct: 180 ACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA 239
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 240 WNALMVGYVQ 249
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T+N++ G + QC +R F +++ + S+ + CG ID K+F+ + +++
Sbjct: 380 MSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDL 439
Query: 63 VSWTAIIAAFAQ 74
+ W +++ +A+
Sbjct: 440 ILWNTLLSVYAE 451
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC +F K+ VRNV
Sbjct: 78 CVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVY 137
Query: 64 SWTAIIA 70
SW AII
Sbjct: 138 SWAAIIG 144
>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g05340-like [Glycine max]
Length = 753
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F+ N++V + LI+ KCG+ D ++F +M +N VSW ++IAA+A+
Sbjct: 209 GKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYAR 268
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 43 KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
KCG+ D K+F+ MPV++ VSW AII+ F + + D
Sbjct: 4 KCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCD 40
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C +R+ G Q L ++ + +++V +SL+ F +CGE K+F++M RNV
Sbjct: 140 LSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNV 199
Query: 63 VSWTAIIAAFAQ 74
VSWT++I +A+
Sbjct: 200 VSWTSMICGYAR 211
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC RNI G +R+GF + + ++LI KC +++F++M + V
Sbjct: 343 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 402
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
V+W +I+A + + EVD +
Sbjct: 403 VTWNSIVAGYIENGEVDAAW 422
>gi|302806852|ref|XP_002985157.1| hypothetical protein SELMODRAFT_121750 [Selaginella moellendorffii]
gi|300146985|gb|EFJ13651.1| hypothetical protein SELMODRAFT_121750 [Selaginella moellendorffii]
Length = 280
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++CGS ++ +A G ++ VG++L+S G+C D +F+++ VRN+
Sbjct: 63 VSACGSIGSLAMARALHGVARSGGLESDSIVGNALVSMYGRCKSCEDSRNVFDRLAVRNI 122
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+A+ Q
Sbjct: 123 VSWTAMISAYGQ 134
>gi|147809821|emb|CAN66904.1| hypothetical protein VITISV_025136 [Vitis vinifera]
Length = 558
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRN 61
+++CG N G Q LA+++ F + VYVG++LI +C CG + + ++E M RN
Sbjct: 47 ISACGGDDNC--GRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRN 104
Query: 62 VVSWTAIIAAF 72
+VSW ++IA F
Sbjct: 105 LVSWNSMIAGF 115
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLI-SFCGKCGENIDVYKMFEKMPVR-NVV 63
CG + Q QCL +++GF+ + V ++L+ ++ GE D Y++F ++ R +VV
Sbjct: 151 CGMGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVV 210
Query: 64 SWTAIIAAFAQ 74
SWT IIAAFA+
Sbjct: 211 SWTGIIAAFAE 221
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R Q ++ GF ++ + ++LI C +CG ++F+KM R+
Sbjct: 250 LKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDT 309
Query: 63 VSWTAIIAAFA 73
VSW +++ A+A
Sbjct: 310 VSWNSMLKAYA 320
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GT +++G V N + SSL++ GKCG +D Y++F + NVV WTA+I F Q
Sbjct: 419 GTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQ 478
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q L + F+ + +V ++L+ KCG + +F++MP RN+VS
Sbjct: 209 ACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVS 268
Query: 65 WTAIIAAFAQ 74
W ++I F +
Sbjct: 269 WNSMIVGFVK 278
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q V+ G V VYV +SL+ KCG D K+F R+V
Sbjct: 306 LSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDV 365
Query: 63 VSWTAII 69
V+W +I
Sbjct: 366 VTWNVMI 372
>gi|297841909|ref|XP_002888836.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334677|gb|EFH65095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 744
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 5 SCGSTRNIRGGT--QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+C RN+R G + L+ + NV + + LI+ KCG + ++F+ MP RNV
Sbjct: 68 ACADQRNLRDGINLHHHMLSHPYCYSQNVILANYLITMYAKCGNILYARQVFDTMPERNV 127
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I +AQ
Sbjct: 128 VSWTALITGYAQ 139
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK---MFEKMPVRNVVSWTAIIAA 71
G Q LA++ G ++YV ++LIS G+C + Y+ +FE M +N+V+W ++IAA
Sbjct: 176 GKQVHGLALKLGLYCSIYVANALISMYGRCHDGTAAYEAWTVFEAMEFKNLVTWNSMIAA 235
Query: 72 F 72
F
Sbjct: 236 F 236
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKC-GENIDVYKMFEKMP-VRNVVSWTAIIAAFA 73
Q L V+SG V V ++L+ + GE D YK+F +M R++V+WT II AFA
Sbjct: 288 QLHSLTVKSGLVTQTEVATALVKVYSEILGEFTDCYKLFMEMSHCRDIVAWTGIITAFA 346
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R ++ GF + V +SLI KCG ++F+ M R+V
Sbjct: 376 LKACAGLVTARHALSIHAQVIKGGFATDTVVNNSLIHAYAKCGSLDLCKRVFDDMDSRDV 435
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +++ A++ +VD
Sbjct: 436 VSWNSLLKAYSLHGQVD 452
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT+ G+ +++ G ++ C ++ G N Y+ ++L+ KCG D +K F+ R+V
Sbjct: 562 VTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621
Query: 63 VSWTAIIAAFAQEWE 77
V W ++I+++A E
Sbjct: 622 VCWNSVISSYANHGE 636
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + GG Q +R G + + + LI KCG +K+F+ MP +N+
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNI 315
Query: 63 VSWTAIIAAFAQ 74
+SWT +++ + Q
Sbjct: 316 ISWTTLLSGYKQ 327
Score = 41.6 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAA 71
Q Q V+S F +VYVG+ LI F K G NID ++ F+ +P ++ V+WT +I+
Sbjct: 169 QLQSFLVKSRFDRDVYVGTLLIDFYLKEG-NIDYARLVFDALPEKSTVTWTTMISG 223
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S + GTQ +++ + YV +SLI KC + K+F+ +V
Sbjct: 357 LTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDV 416
Query: 63 VSWTAIIAAFAQ---EWEV 78
V + A+I +++ +WE+
Sbjct: 417 VLFNAMIEGYSRLGTQWEL 435
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ SG + Y+ + L++ + G + K+FEKMP RN+V+W+ +++A
Sbjct: 71 IVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSA 119
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TS G ++ I G L + G +++ GS+LI+ C D +F++M V+++
Sbjct: 467 LTSLGLSKQIHG------LMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 63 VSWTAIIAAFAQEWE 77
V W ++ + + Q+ E
Sbjct: 521 VIWNSMFSGYVQQSE 535
>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 989
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C +++R AVR+ F N V ++L++ G CGE YK+F+KM VR +
Sbjct: 450 IYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYKLFQKMEVRML 509
Query: 63 VSWTAIIAAFAQ 74
+SW II+ +A+
Sbjct: 510 ISWNTIISGYAE 521
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + C +R+G NV V ++L+ K G +F+ M +++
Sbjct: 147 IKACAAVSCLPLGREMHCRVLRTGHEGNVGVQTALLDMYAKAGWIGASRTVFDFMGQKDL 206
Query: 63 VSWTAIIAAFA 73
+SW A+I+ ++
Sbjct: 207 ISWNAMISGYS 217
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C N G L ++ GF + V ++LI +CG ++F+ V++
Sbjct: 750 VSACAQLGNSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSFARELFDSSVVKDS 809
Query: 63 VSWTAIIAAFA 73
V+W+A+I +++
Sbjct: 810 VTWSAMINSYS 820
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC G Q L ++ + ++++VGSSL+ K G ++ +FE +P R+V
Sbjct: 583 LTSCTDASGSELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDV 642
Query: 63 VSWTAIIAAFAQ 74
VS TAII+ +AQ
Sbjct: 643 VSCTAIISGYAQ 654
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + + IR G + +++ ++ +VY+ + LI F KC +D +F++M RNV
Sbjct: 482 LNECVNNKAIREGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMSERNV 541
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ +++
Sbjct: 542 VSWTAMISGYSR 553
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TS + G Q +R V + +S+I KCG ++F+ MP R V
Sbjct: 684 LTSLSGLAALDHGKQVHSHVLRRELPFYVVLQNSMIDMYSKCGSLNYARRIFDSMPERTV 743
Query: 63 VSWTAIIAAFAQ 74
+SW A++ + +
Sbjct: 744 ISWNAMLVGYGK 755
>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
Length = 542
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F +N +V + LI+ KCG+ D K+F MP RN VSW ++IAAFA+
Sbjct: 263 GKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFAR 322
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G+ + VG++LI+ +CG ++F++M +NVV+WTA+I+ +Q
Sbjct: 72 GYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + IR G Q L + G ++ + S+L+ KCG D +K+FE +
Sbjct: 150 LMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDE 209
Query: 63 VSWTAIIAAFAQ 74
VS T I+ AQ
Sbjct: 210 VSMTVILVGLAQ 221
>gi|125575136|gb|EAZ16420.1| hypothetical protein OsJ_31889 [Oryza sativa Japonica Group]
Length = 664
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + C A RSG ++N++V S L+ GK G+ K+F ++ +NVV+W +I+A++ Q
Sbjct: 212 GKEVHCYAFRSGLISNIFVSSKLVDLYGKTGDVGTADKVFRRISNKNVVTWNSILASYRQ 271
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +R G NVY+GSSLI +CGE +F + +N W +I ++
Sbjct: 28 GKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGYARSVFAAIEEKNATVWNELIRSYIN 87
Query: 75 E 75
E
Sbjct: 88 E 88
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + + G Q L + SG +V +G++LI+ +CG D Y++F + RNV
Sbjct: 594 LVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNV 653
Query: 63 VSWTAIIAAFAQEWE 77
+SWTA+I FA + E
Sbjct: 654 MSWTAMIGGFADQGE 668
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S+ + G + + SG+ + VG++LIS K G D K+F+KMP R++
Sbjct: 695 LKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDI 754
Query: 63 VSWTAIIAAFAQ 74
+SW +IA +AQ
Sbjct: 755 MSWNKMIAGYAQ 766
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ + G G ++V +G+SLIS +CG+ ++F MP R++
Sbjct: 392 LNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDL 451
Query: 63 VSWTAIIAAFAQ 74
+SW AIIA +A+
Sbjct: 452 ISWNAIIAGYAR 463
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C R++ + V +G ++++ + LI+ KC D +++F KMP R+V
Sbjct: 89 VQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDV 148
Query: 63 VSWTAIIAAFAQE 75
+SW ++I+ +AQ+
Sbjct: 149 ISWNSLISCYAQQ 161
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + V+ +V VG++LIS KCG + ++F+ +NV
Sbjct: 796 LNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNV 855
Query: 63 VSWTAIIAAFAQ 74
V+W A+I A+AQ
Sbjct: 856 VTWNAMINAYAQ 867
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G +RSG +N ++ ++L++ +CG ++ +FE R++
Sbjct: 493 LSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDI 552
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
+SW ++IA AQ + Y +
Sbjct: 553 ISWNSMIAGHAQHGSYEAAYKLFL 576
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + LAV G +++ VG++L + +CG+ + E R+VV + A+IAA AQ
Sbjct: 303 GKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQ 362
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S + G + + +G+ + V +SL++ GKC + ++F + R+V
Sbjct: 190 LTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDV 249
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VS+ ++ +AQ+ V+ C
Sbjct: 250 VSYNTMLGLYAQKAYVEEC 268
>gi|218191884|gb|EEC74311.1| hypothetical protein OsI_09581 [Oryza sativa Indica Group]
Length = 1112
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +CGS + + +AVRSG + VG++L+ GKCGE ++F+ MPV++V
Sbjct: 437 VEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGKCGELGASARVFDTMPVKDV 496
Query: 63 VSWTAIIAAFA 73
++W ++I A
Sbjct: 497 LTWNSMIGALG 507
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++R G +A R G +++V +SL+ KC + K+F+ + V+NVVS
Sbjct: 239 ACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDMYAKCLDLRSARKVFDLIAVKNVVS 298
Query: 65 WTAIIAAFAQ 74
W +++
Sbjct: 299 WNTMLSGLVH 308
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++L+ GKCG DV ++F+ M RNV++W+ +IAA A
Sbjct: 368 NALLDAYGKCGLVEDVLRLFQGMRERNVITWSTVIAACAH 407
>gi|357130454|ref|XP_003566863.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Brachypodium distachyon]
Length = 608
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I G A ++GF VYV SSL+ F GKCGE D ++F+ MP V
Sbjct: 177 LKACAGIGMIETGRALHAYAWKAGFGECVYVLSSLVDFYGKCGEVDDAREVFDAMPATTV 236
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W +++ + +D
Sbjct: 237 VTWNSMLMGYINNGRID 253
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C + ++R G Q AV+ G + + Y+G+ L F +CG D + F+ +P +N
Sbjct: 77 CVAAGSLRAGRQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALDDAERAFDALPKKNAF 136
Query: 64 SWTAIIAAFAQ 74
+W A+I +++
Sbjct: 137 AWAAVIGLWSR 147
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
GG Q +AV SG +V +G+S+I+F K G +F++M R+ ++W +IA +
Sbjct: 289 GGRQGHAVAVSSGLEMDVILGTSIINFYCKVGLVEAAEAVFKQMVERDTITWNLMIAGYL 348
Query: 74 QEWEVD 79
Q+ ++D
Sbjct: 349 QDEQID 354
>gi|242048238|ref|XP_002461865.1| hypothetical protein SORBIDRAFT_02g009560 [Sorghum bicolor]
gi|241925242|gb|EER98386.1| hypothetical protein SORBIDRAFT_02g009560 [Sorghum bicolor]
Length = 470
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C I+ G + VR G +VYVG+SL+ KCG+ +K F+K+ +N++S
Sbjct: 305 ACAHEGAIQTGKRIHNQVVRMGLEDDVYVGTSLVDMYSKCGKVEMAWKAFQKIKGKNILS 364
Query: 65 WTAIIAAFA 73
WTA+IA +
Sbjct: 365 WTAMIAGYG 373
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + ++ Q A+++ A+V+VG++LI KCG D +FE MP RN
Sbjct: 106 VCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERND 165
Query: 63 VSWTAIIAAFAQ 74
V+W++I+A F Q
Sbjct: 166 VTWSSIVAGFVQ 177
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q + R+GF N +V S+L+ KCG + Y +F + +NV
Sbjct: 207 IRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNV 266
Query: 63 VSWTAIIAAFAQ 74
V W AII+ FA+
Sbjct: 267 VLWNAIISGFAK 278
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R G +R G + + L++ KCG K+F+++P R++VSW
Sbjct: 8 CAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSW 67
Query: 66 TAIIAAFAQEWE 77
+I Q E
Sbjct: 68 NIMIGTCVQNGE 79
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +A + GF+ + V ++L++ G CGE D ++F++M R+VVSWTA+++AF +
Sbjct: 132 GRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVR 191
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G R G +V+VG+SL+ KCG +F KMP++N+
Sbjct: 319 LSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNL 378
Query: 63 VSWTAIIAAFA 73
SW A+I FA
Sbjct: 379 SSWNALINGFA 389
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRN 61
+ +CG R G +R + VG++++ KC E +D+ ++F+++ VR+
Sbjct: 218 LVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKC-EKLDLARRVFDRLLVRD 276
Query: 62 VVSWTAIIAAFAQ 74
V+SWT +I+ Q
Sbjct: 277 VISWTIMISGLVQ 289
>gi|357112135|ref|XP_003557865.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Brachypodium distachyon]
Length = 521
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q QC ++S V+++ GS+L+ KCG D K+F+ M RNV++WT++I + +
Sbjct: 283 GEQVQCHVIKSNIVSDIKAGSALLDMYSKCGRVEDARKVFDGMADRNVITWTSMIDGYGK 342
>gi|255582516|ref|XP_002532043.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528286|gb|EEF30333.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 468
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C N+ ++S F +NV+V ++L+ C KC + Y +F KMP R+V
Sbjct: 45 LKACAKLSNLHYSQVIHTHVIKSPFYSNVFVQTALLDMCVKCHQLDIAYNVFVKMPKRDV 104
Query: 63 VSWTAIIAAFAQ 74
SW A++ FAQ
Sbjct: 105 TSWNAMLLGFAQ 116
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC +R G Q +R G + ++V ++LIS K G+ +F+ M R+
Sbjct: 249 LSSCLQPEAVRQGMQVHSHGIRFGCDSEIHVANTLISMYSKFGDVYSARCLFDSMCNRSC 308
Query: 63 VSWTAIIAAFAQEWEVD 79
V+WT++I+ +A++ +D
Sbjct: 309 VTWTSMISGYAEKGNMD 325
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CG T + G A + NV V ++LI KCG D + +F MP R V
Sbjct: 350 ISGCGQTGILEVGKWIHVYADSNCLKHNVVVCNALIDMYAKCGSIDDAWDLFNTMPDRTV 409
Query: 63 VSWTAIIAAFA 73
V+WT +IA A
Sbjct: 410 VTWTTMIAGCA 420
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S ++ G + + ++ GFV++VYV +SLIS K G D K+FE+MP R++
Sbjct: 137 IKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDI 196
Query: 63 VSWTAIIAAF 72
VSW ++I+ +
Sbjct: 197 VSWNSMISGY 206
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P ++ R I G A+R GF+ ++ + ++LI G+CG+ +F++M +
Sbjct: 341 LPASAILEGRTIHG------YAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEK 394
Query: 61 NVVSWTAIIAAFAQ 74
NV+SW +IIAA+ Q
Sbjct: 395 NVISWNSIIAAYVQ 408
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + V+S + +N + +SL+ CG+ D K F + +++VVSW +II A+A
Sbjct: 450 GREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYA 508
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + + G + C AVRS +V V +S++ K GE ++F M RN+V
Sbjct: 240 ACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIV 299
Query: 64 SWTAIIAAFAQEWEV 78
+W +I +A+ V
Sbjct: 300 AWNVMIGCYARNGRV 314
>gi|359473235|ref|XP_003631274.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic-like [Vitis vinifera]
Length = 667
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ CG+ R G Q C A++ G+V AN++ ++L+ F CG ID K FE + +
Sbjct: 219 IRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLIDAKKSFEAIRDED 278
Query: 62 VVSWTAIIAAFA 73
V+SW +I++ FA
Sbjct: 279 VISWNSIVSVFA 290
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 11 NIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
NI G Q Q V+ GF +V+V S+LI+ GKCG+ +FE +P R +
Sbjct: 329 NIIFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTL 381
Score = 34.7 bits (78), Expect = 8.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C A++SGF + V SLI K G +++FE++ N + +T+II +A+
Sbjct: 441 HCCAIKSGFEFDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYAR 496
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS + I G ++ GF A V+V SSL+ GKCG D K+F+ M +NV
Sbjct: 189 LKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNV 248
Query: 63 VSWTAIIAAFAQ 74
V+W ++I + Q
Sbjct: 249 VTWNSMIVGYVQ 260
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T NI+ G + C +R ++V V +S+I KC D K+F+ R++
Sbjct: 391 LSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDL 450
Query: 63 VSWTAIIAAFAQ 74
V W ++AA+AQ
Sbjct: 451 VLWNTLLAAYAQ 462
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R + G Q +++G F N YV + L+ F KC ++F ++ VRNV
Sbjct: 89 CVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVF 148
Query: 64 SWTAIIA 70
SW AI+
Sbjct: 149 SWAAIVG 155
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +A+ + + +GSS+I+F K G D +F +M ++VV+W +I+++ Q
Sbjct: 302 GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 361
Query: 75 EWEV----DMCY 82
+V +MC+
Sbjct: 362 HHQVGKALNMCH 373
>gi|356532255|ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 948
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I+ GTQ + G ++V V +S+++ +CG+ + K+F+ + V+N+
Sbjct: 514 IRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVKNL 573
Query: 63 VSWTAIIAAFAQ 74
+SW A++AAFAQ
Sbjct: 574 ISWNAMMAAFAQ 585
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
A+++G ++V VG+++I+ +CG+ F MP+R+ +SWTA+I AF+Q ++D
Sbjct: 401 AIKNGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDID 458
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S +++ G +R + ++GS LI KCG ++F + +N
Sbjct: 281 LSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQ 340
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ AQ
Sbjct: 341 VSWTCLISGVAQ 352
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
++SC ++R G + +R+ V +V+VG++L+ KCG+ K+F++MPV+N
Sbjct: 233 LSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 292
Query: 62 VVSWTAIIAAFAQE 75
VVSW ++I+ AQ+
Sbjct: 293 VVSWNSMISGLAQK 306
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R +R G + A++ G ++VYV ++L+ C K+F+ P R++
Sbjct: 132 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDL 191
Query: 63 VSWTAIIAAFAQ 74
VSWT +I + +
Sbjct: 192 VSWTTMIQGYVK 203
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ + L ++ G++++ +G++L+S KCG D +F+KM RNV
Sbjct: 655 LNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNV 714
Query: 63 VSWTAIIAAFAQ 74
+SW AII AQ
Sbjct: 715 ISWNAIIGGCAQ 726
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + V+ GF+ ++ V ++LIS +CG D +F KM +++
Sbjct: 453 LNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDI 512
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I A+
Sbjct: 513 ISWTAMIGGLAK 524
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S + G + A+++ + +V V + +++ KCG + ++F+KM ++V
Sbjct: 251 LSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSV 310
Query: 63 VSWTAIIAAFA 73
VSWT II +A
Sbjct: 311 VSWTIIIGGYA 321
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ--EWE 77
+ +G +++ VG++L+ KCG D ++FEK+ R++++W +I A+ WE
Sbjct: 372 LNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWE 428
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + + +G + +V ++L++ CG D ++F++M R++
Sbjct: 554 LNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613
Query: 63 VSWTAIIAAFA 73
V++ A+I +A
Sbjct: 614 VAYNAMIGGYA 624
>gi|222623987|gb|EEE58119.1| hypothetical protein OsJ_09011 [Oryza sativa Japonica Group]
Length = 1112
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +CGS + + +AVRSG + VG++L+ GKCGE ++F+ MPV++V
Sbjct: 437 VEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGKCGELGASARVFDTMPVKDV 496
Query: 63 VSWTAIIAAFA 73
++W ++I A
Sbjct: 497 LTWNSMIGALG 507
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++R G +A R G +++V +SL+ KC + K+F+ + V+NVVS
Sbjct: 239 ACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDMYAKCLDLRSARKVFDLIAVKNVVS 298
Query: 65 WTAIIAAFAQ 74
W +++
Sbjct: 299 WNTMLSGLVH 308
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++L+ GKCG DV ++F+ M RNV++W+ +IAA A
Sbjct: 368 NALLDAYGKCGLVEDVLRLFQGMRERNVITWSTVIAACAH 407
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK-MPVRN 61
V++C + G Q ++ +SGF +N+YV SSLI KCG + Y +F+ + VR+
Sbjct: 252 VSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRS 311
Query: 62 VVSWTAIIAAFAQ 74
+V W A+I+ FA+
Sbjct: 312 IVLWNAMISGFAR 324
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q ++++ +N +VG++L+ KC D +MFE MP +N V+W++++A + Q
Sbjct: 165 QLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQ 222
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C TR+ GG +R G ++ + LI+ KC K F +MPV+++VSW
Sbjct: 53 CAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSW 112
Query: 66 TAIIAAFAQEWE 77
+I A Q E
Sbjct: 113 NTVIGALTQNAE 124
>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + C +R G V +V+V ++LISF KC K+F+KM R+VV+W ++IA +AQ
Sbjct: 143 GKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQ 202
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N++GG + AV++G+ N+YV +++I K G +F++ R+++ WTAII+
Sbjct: 373 NLKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIIS 432
Query: 71 AFAQEWEVDMCYTF 84
A A + + TF
Sbjct: 433 AHAAHGDANSALTF 446
>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
Length = 711
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S R + G Q Q + FV N++V S+L+ F KCG+ D +F M R+VVS
Sbjct: 261 ACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVS 320
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 321 WNAMIGGYA 329
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + GTQ A++ +V +G++LI K GE D + F++M +NV+SW
Sbjct: 465 CANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISW 524
Query: 66 TAIIAAFAQ 74
T++I+ +A+
Sbjct: 525 TSLISGYAK 533
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ +GF +++++ + LI F K G+ I +F+ MP R+VVSWTA+++ ++Q
Sbjct: 178 ITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 229
>gi|410110037|gb|AFV61098.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
rubella]
Length = 361
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 270 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 329
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 330 WNSIIFAYAQ 339
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ ++ C T V
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVTLFV 45
>gi|410109959|gb|AFV61059.1| pentatricopeptide repeat-containing protein 81, partial
[Acantholippia seriphioides]
Length = 376
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 258 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 317
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 318 WNSIIFAYAQ 327
>gi|302799188|ref|XP_002981353.1| hypothetical protein SELMODRAFT_114156 [Selaginella moellendorffii]
gi|300150893|gb|EFJ17541.1| hypothetical protein SELMODRAFT_114156 [Selaginella moellendorffii]
Length = 307
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAFAQEWEVDM 80
G +NV VG+++I+ GKCG D +FE+MP + NV+SWT+I++A AQ +++M
Sbjct: 92 GLESNVIVGTAVITMYGKCGSLTDSRLVFERMPQKNLNVISWTSIVSAHAQAGDLEM 148
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C + G Q ++SGF+++V VG++L+ KCG K F M R +
Sbjct: 301 LTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTL 360
Query: 63 VSWTAIIAAFAQ 74
+SWT++I +FA+
Sbjct: 361 ISWTSMITSFAR 372
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ G Q L+ + G +N+ + +SL+ KCG + +F +M +N+++W
Sbjct: 192 CSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITW 251
Query: 66 TAIIAAFAQ 74
A+IA AQ
Sbjct: 252 NAMIAGHAQ 260
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+++G +V S L++ KCG ++ K+F+ +P RNVV WT ++ + Q
Sbjct: 7 IKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQ 58
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C S +I G Q+ ++ + +G++L S K G K F + +
Sbjct: 86 IALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEK 145
Query: 61 NVVSWTAIIAA 71
+V+SWT II+A
Sbjct: 146 DVISWTTIISA 156
>gi|297739065|emb|CBI28554.3| unnamed protein product [Vitis vinifera]
Length = 1125
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ CG+ R G Q C A++ G+V AN++ ++L+ F CG ID K FE + +
Sbjct: 219 IRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLIDAKKSFEAIRDED 278
Query: 62 VVSWTAIIAAFA 73
V+SW +I++ FA
Sbjct: 279 VISWNSIVSVFA 290
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 11 NIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
NI G Q Q V+ GF +V+V S+LI+ GKCG+ +FE +P R +
Sbjct: 329 NIIFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTL 381
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C A++SGF + V SLI K G +++FE++ N + +T+II +A+
Sbjct: 441 HCCAIKSGFEFDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYAR 496
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q + G +VYV ++L+ G C D K+F++MPVR++
Sbjct: 126 LKACATCLALEEGKQVHADIFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSI 185
Query: 63 VSWTAIIAAFAQE-WEVDMCYTFI 85
VSW ++I A Q W D + F+
Sbjct: 186 VSWNSVITACVQNLWLGDAIWNFV 209
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C N+ G + G N +G++L+ K G+ +F++M +NV +W
Sbjct: 230 CAQIGNLSLGRWIHSQVIERGMTLNCQLGTALVDMYAKSGDLGYAKLVFDRMEKKNVWTW 289
Query: 66 TAIIAAFAQ 74
+A+I AQ
Sbjct: 290 SAMILGLAQ 298
>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
Length = 667
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + G + L ++ G + A+V VGS+++ KCGE D + F++MP R++
Sbjct: 354 ACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIA 413
Query: 64 SWTAIIAAFAQ 74
SW II +AQ
Sbjct: 414 SWNGIICGYAQ 424
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q L + GF ++ + ++L++ KCG ++FE++P ++VVSWT II F Q
Sbjct: 265 QVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQ 322
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ ++G++L+ + GE D K+F+ MP R +V+W A+I+ +++
Sbjct: 177 DAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSK 221
>gi|357153657|ref|XP_003576524.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic-like [Brachypodium distachyon]
Length = 809
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G L +R +V+VG+S+++ K G+ I + F +MP+RNV
Sbjct: 177 LSACAMGAELCVGRAVHGLVLRRDPEYDVFVGTSIVNMYAKSGDMIAAMREFWRMPIRNV 236
Query: 63 VSWTAIIAAFAQEWE 77
VSWT IA F QE E
Sbjct: 237 VSWTTAIAGFVQEEE 251
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
S +I G Q L ++ GFV +V VGS+L + + + D Y++F++M R+ VSWTA
Sbjct: 381 SMDSIEFGRQLHSLVIKDGFVHDVLVGSALSTMYSRGDDLEDSYRVFKEMQERDEVSWTA 440
Query: 68 IIAAFA 73
++A FA
Sbjct: 441 MVAGFA 446
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ Q C+A + G + YV S +I K G D K FE +
Sbjct: 76 LAACVGPGHVAFAEQVYCVAWKDGLTGDAYVCSGMIDLLAKSGRFEDALKAFEDGDRGSA 135
Query: 63 VSWTAIIAA 71
V W +I+
Sbjct: 136 VCWNTVISG 144
>gi|449459276|ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 502
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +CG ++R G + CL ++S F A+V VG+SLI KCG ++ K+F M N
Sbjct: 216 LNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLN 275
Query: 62 VVSWTAIIAAFA 73
+V+WT +I+ +
Sbjct: 276 IVTWTTMISCYG 287
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + C ++ GFV V VGS+++ F KCG D K+F+ M ++ VSW ++I+ + +
Sbjct: 127 GKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGR 186
>gi|302789109|ref|XP_002976323.1| hypothetical protein SELMODRAFT_104848 [Selaginella moellendorffii]
gi|300155953|gb|EFJ22583.1| hypothetical protein SELMODRAFT_104848 [Selaginella moellendorffii]
Length = 371
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
N+ VG++ ++ GKCG D Y +F++MP R+V++W AII+A+A +
Sbjct: 75 NLIVGNATVNMYGKCGSLEDAYAVFDRMPARDVITWNAIISAYAHQ 120
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G +G + V VG++L++ KCG + ++F+ M +V+S
Sbjct: 151 ACAKLKALEEGRAIHARVSEAGLASEVIVGTALVNLYAKCGWLDEAREIFDSMRREDVIS 210
Query: 65 ------WTAIIAAF---AQEWE 77
WT+++ A+ AQ W+
Sbjct: 211 SRDMVLWTSMMVAYARNAQGWK 232
>gi|410110045|gb|AFV61102.1| pentatricopeptide repeat-containing protein 81, partial [Nashia
inaguensis]
Length = 405
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 273 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSXKETSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ +++ C T V
Sbjct: 4 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGBLERCVTLFV 48
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C +T +I G+Q L ++SG V V +SLIS KCG + +F M R++
Sbjct: 399 ISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDI 458
Query: 63 VSWTAIIAAFAQ 74
VSWT +I A++Q
Sbjct: 459 VSWTGMITAYSQ 470
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++ G Q +R+ + YV S+++ KCG + ++F + RN
Sbjct: 298 LTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNS 357
Query: 63 VSWTAIIAAFAQ 74
VSWT +I F Q
Sbjct: 358 VSWTVLIGGFLQ 369
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q V+ G + + V +++I+ KCG + K F+ + +++VSW A+I ++Q
Sbjct: 544 GDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQ 603
>gi|302816274|ref|XP_002989816.1| hypothetical protein SELMODRAFT_130516 [Selaginella moellendorffii]
gi|300142382|gb|EFJ09083.1| hypothetical protein SELMODRAFT_130516 [Selaginella moellendorffii]
Length = 487
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + A+ GF ++ +G++L++ GKCG + ++F MPVRN VS
Sbjct: 290 TCADCNALVEGKIFHARAMELGFGFDIILGNALLNMYGKCGSLREANRVFAAMPVRNSVS 349
Query: 65 WTAIIAAFAQEWEVDM 80
W +I A+AQ V +
Sbjct: 350 WNTLIVAYAQNGHVKL 365
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK-MPVRN 61
+ +C ++ ++ G + A G +NV V +SLI GKC + +F + + +R+
Sbjct: 152 IDACANSMDLASGIVFHRRAAEVGMDSNVIVANSLIKMYGKCKRLEEAMSVFNRILGIRD 211
Query: 62 VVSWTAIIAAFAQ 74
+VSW A+I+AFAQ
Sbjct: 212 LVSWNALISAFAQ 224
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAAF 72
+G+ +V S+L++ GKC + +D K+ F+ MP RNVV+WTA+I A
Sbjct: 73 NGYGGDVVACSALVTMYGKC-KCVDRAKVVFQSMPERNVVTWTALIGAL 120
>gi|255569403|ref|XP_002525669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535105|gb|EEF36787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 494
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +T +IR GT+ ++ GF +V+V ++L+ KC + K+F++MP+R+
Sbjct: 57 LKACSNTNSIRDGTKIHSHLIQLGF-QHVFVMTTLLDMYSKCYDLASSRKVFDEMPMRST 115
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +II+A+ + + VD
Sbjct: 116 VSWNSIISAYCRFFLVD 132
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G + + + +G ++V V +SLI +CG +FE++ +++
Sbjct: 356 LSACADLGSLSMGEEIEEYILANGLHSSVQVQTSLIHMFCRCGSLEKAKAVFERLATKDL 415
Query: 63 VSWTAIIAAFA 73
+W+++I +A
Sbjct: 416 AAWSSMINGYA 426
>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 851
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 5 SCGSTR--NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR 60
SCG R G Q LA + G + +VG+SL+S G+CG D K+F +P R
Sbjct: 75 SCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAAR 134
Query: 61 NVVSWTAIIAAFA 73
N+VSW A++AA +
Sbjct: 135 NIVSWNALMAALS 147
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++R G + C A+++ + ++ SSLI KCG D F+++ R+
Sbjct: 484 LMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKCGFVEDARTFFDRLKARDA 543
Query: 63 -VSWTAIIAAFA 73
VSWTA+I +A
Sbjct: 544 KVSWTAMITGYA 555
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G LA +SG+ A VG++L+ KCGE D + F + P +VVSW ++ A+ +
Sbjct: 189 GRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPEAP--SVVSWNVMLGAYTR 246
Query: 75 EWEVDMCYTFI 85
E + +
Sbjct: 247 NREAGAAFGLL 257
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G Q+ +A++ G +VYV ++LI+F G C K+F++M R +
Sbjct: 138 LKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTL 197
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW A+I A + + D
Sbjct: 198 VSWNAVITACVENFCFD 214
>gi|302810635|ref|XP_002987008.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
gi|300145173|gb|EFJ11851.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
Length = 694
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + SG +++ VGS++++F GKCG + + F++MP +N
Sbjct: 156 LAACSSGGELAAGRKIAARVEASGLDSDLIVGSAIVNFYGKCGRLDEAREAFDRMPAKNN 215
Query: 63 VSWTAIIAAFAQ 74
V+W +IAA+ Q
Sbjct: 216 VTWNGMIAAYVQ 227
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
+C S +++ G L V G+ ++ VG+SL++ KC D +F++M
Sbjct: 51 ACSSLEDLQQGKMIHSLIVELGYGEQDGEEQDLMVGNSLVNMYAKCRSLADAIAIFDRMK 110
Query: 59 VRNVVSWTAIIAAFAQEWEVD---MCY 82
R+V SWT ++ AFAQ ++ CY
Sbjct: 111 NRSVFSWTIMVTAFAQNGQLQRAIQCY 137
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
V ++L+ +CG D +F +P +N VSWT IIAAFAQ+ D
Sbjct: 286 VCNALVHMYARCGSLDDARLVFLAIPSKNTVSWTTIIAAFAQQENRD 332
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R I G S F A++YV ++L+ F KCGE K+F++MP R++
Sbjct: 110 LKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDI 169
Query: 63 VSWTAIIAAFA 73
V+W A+I+ F+
Sbjct: 170 VAWNAMISGFS 180
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 42/66 (63%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ GG C A+++GF+ ++ VG+++ISF K G D ++ F ++ ++++VS+
Sbjct: 318 CARFGDLSGGRCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSY 377
Query: 66 TAIIAA 71
++I+
Sbjct: 378 NSLISG 383
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G+ V +G+ N + ++L+ KCG+ ++F+ M R++
Sbjct: 416 LTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDI 475
Query: 63 VSWTAIIAAFA 73
VSW ++ F
Sbjct: 476 VSWNTMLFGFG 486
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G C ++ GF +NVYV ++L++ G C D ++F+++P RN+VSW A+I +
Sbjct: 161 GKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGY 218
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
NV+VG++LI KCG + K+F+ M V+NV +W +I+ +A
Sbjct: 277 NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYA 320
>gi|302820136|ref|XP_002991736.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
gi|300140417|gb|EFJ07140.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
Length = 589
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + +R G + SG +NV V +++++ GKCG D +F+KMP ++V+
Sbjct: 358 ACSNLGALREGRMIHASVIASGMESNVVVATAIVNMYGKCGSMGDAKMVFDKMPAKDVIC 417
Query: 65 WTAIIAAFA 73
W ++I+A+A
Sbjct: 418 WNSMISAYA 426
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 37 LISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+I G+CG ID K+F++ P N+ SW ++AA+A
Sbjct: 287 IIEMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAH 324
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 49 DVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85
+ +K+F MP RNVVSW +++A AQE + F+
Sbjct: 16 EAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFL 52
>gi|410109991|gb|AFV61075.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
macropoda]
Length = 377
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 259 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 318
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 319 WNSIIFAYAQ 328
>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1736
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + +R+ ++V VGS+L+ KCG + FE MP+RNV
Sbjct: 699 LSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNV 758
Query: 63 VSWTAIIAAFAQ 74
SW ++I+ +A+
Sbjct: 759 YSWNSMISGYAR 770
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 37/58 (63%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+++ GFV N+++ ++LI+ + G+ K+F++M RN+V+W +I+ + Q + D
Sbjct: 97 SIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPD 154
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+SGF+ ++YV S+L+S + G D +FE+M VRNVVS ++ ++
Sbjct: 310 KSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ 361
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S I G Q C ++ G +V V ++L++ + G + K+F MP +
Sbjct: 495 LSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQ 554
Query: 63 VSWTAIIAAFA 73
VSW ++I A +
Sbjct: 555 VSWNSVIGALS 565
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWTAIIAAF 72
Q L ++ + +G++L+S GKCGE + K+F +M R+ VSW ++I+ +
Sbjct: 611 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGY 667
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L ++ + ++V V + LIS G C ++ D +F+ + +RN +SW +II+ ++
Sbjct: 193 GVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYS 252
Query: 74 QEWEVDMCY 82
+ + Y
Sbjct: 253 RRGDAVSAY 261
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 13 RGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
R G + +R+G N V +G+ L++ K G D +FE M ++ VSW ++I+
Sbjct: 403 RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 462
Query: 72 FAQ 74
Q
Sbjct: 463 LDQ 465
>gi|312190414|gb|ADQ43213.1| pentatricopeptide repeat protein [Eutrema parvulum]
Length = 577
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + NI G A ++ +++V+VGS+L+ + G+ ++F +MP RN
Sbjct: 114 LKACGQSSNISYGESLHAFAEKTSLLSSVFVGSALLDMYKRTGKIDKSCRVFSEMPFRNS 173
Query: 63 VSWTAIIAAFAQ 74
V+WT II A Q
Sbjct: 174 VTWTTIITALVQ 185
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C R ++ G + + GF A ++V +SL + +CG+ D ++FE M R
Sbjct: 211 IALKACACLRQVKYGKEIHTHVIVKGFGAILWVANSLFTMYTECGKMQDGLRLFESMSER 270
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWT++I A+++
Sbjct: 271 DVVSWTSLITAYSR 284
>gi|302816163|ref|XP_002989761.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
gi|300142538|gb|EFJ09238.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
Length = 749
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + +R G + SG +NV V +++++ GKCG D +F+KMP ++V+
Sbjct: 276 ACSNLGALREGRMIHASVIVSGMESNVVVATAIVNMYGKCGSMGDAKMVFDKMPAKDVIC 335
Query: 65 WTAIIAAFA 73
W ++I+A+A
Sbjct: 336 WNSMISAYA 344
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G + S NV V ++L+S GKCG +F M VRN++S
Sbjct: 377 ACSVLNSLEDGKKIHAAISASKLEWNVMVATALVSMYGKCGCLERSIAVFRAMEVRNLIS 436
Query: 65 WTAIIAAFAQ 74
WTA++ A A
Sbjct: 437 WTAMLGALAH 446
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 37 LISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LI G+CG ID K+F++ P N+ SW ++AA+A
Sbjct: 205 LIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAH 242
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85
NV+ + LI+ G + +K+F MP RNVVSW +++A AQE + F+
Sbjct: 65 NVFSFNILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFL 120
>gi|410109987|gb|AFV61073.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
fucata]
Length = 368
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 270 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 329
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 330 WNSIIFAYAQ 339
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ ++ C V
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVXLFV 45
>gi|302785946|ref|XP_002974744.1| hypothetical protein SELMODRAFT_31715 [Selaginella moellendorffii]
gi|300157639|gb|EFJ24264.1| hypothetical protein SELMODRAFT_31715 [Selaginella moellendorffii]
Length = 492
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5 SCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C S+ + G T ++ A R G + +VG++L+S GKCG +F+ +P+ NVV
Sbjct: 285 ACASSTALAEGKTIFEGAAGR-GLDRDTFVGTALVSMFGKCGRLDQARALFDNLPLPNVV 343
Query: 64 SWTAIIAAFAQEWE 77
SWT II A+AQ E
Sbjct: 344 SWTNIIVAYAQSGE 357
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
GG Q LA N Y + LI C + G + +F+K+P ++ V+W +I+ +A
Sbjct: 1 GGIQEAKLAFERMPERNPYTWNFLIVACSRNGHLEEARMVFDKLPEKSAVTWNTMISCYA 60
Query: 74 QE 75
Q+
Sbjct: 61 QK 62
>gi|242082860|ref|XP_002441855.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
gi|241942548|gb|EES15693.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
Length = 501
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q + ++ GF N++V SSL+ +CG+ + Y +F M +NV
Sbjct: 265 LSTCASLALMIEGRQLHAVIIKYGFNGNLFVASSLVDVYARCGQIEEAYLVFADMKHKNV 324
Query: 63 VSWTAIIAAF---AQEWE 77
V W A+IA+F + WE
Sbjct: 325 VLWNAMIASFTRHGKSWE 342
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + Q +A++ +N +VG++ + KC D +FEK+P + V+
Sbjct: 166 ACAAENATTECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACLVFEKIPEKTAVT 225
Query: 65 WTAIIAAFAQ 74
W+ + A Q
Sbjct: 226 WSTLFAGLVQ 235
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C R++ G LA+ G + + L++ KCG N +F+ M R++
Sbjct: 63 LQQCAKRRSLLVGKGCHGLAIHLGLATDTITCNILMNLYTKCGRNDCARDVFDAMSFRSI 122
Query: 63 VSWTAIIAAF 72
VSW +IA +
Sbjct: 123 VSWNTMIAGY 132
>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 556
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C + + G Q C A++ A+ +V ++L + KCG+ ++FEKM +R
Sbjct: 221 IALKACANLGALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIR 280
Query: 61 NVVSWTAIIAAFAQ 74
NVVSWT II + Q
Sbjct: 281 NVVSWTMIITTYTQ 294
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG + N G +V+S FV +V+VGS+L+ K + ++F MP+RNVVSW
Sbjct: 125 CGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQIFHAMPIRNVVSW 184
Query: 66 TAIIAAFAQ 74
TAII F
Sbjct: 185 TAIITGFVH 193
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CG+ + G Q A+ G + S+LI+ KCG + K+F++ ++
Sbjct: 425 LSVCGNMAILEQGKQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDI 484
Query: 63 VSWTAIIAAFAQE 75
VSWTA+I +A+
Sbjct: 485 VSWTAMINGYAEH 497
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + G Q + G + + V +S+I+ KCG+ +F+++ R+V
Sbjct: 324 ISGCANLGKTEWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASMVFKELTRRDV 383
Query: 63 VSWTAIIAAFAQ 74
VSW+ IIA ++Q
Sbjct: 384 VSWSTIIAGYSQ 395
>gi|410110011|gb|AFV61085.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
duartei]
Length = 353
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 265 SCSDLATLQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDAWESFESSHKETSVT 324
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 325 WNSIIFAYAQ 334
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ G Q L +S N+ G+SL+S KCG+ D +K+F MP ++VV+W
Sbjct: 237 CSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTW 296
Query: 66 TAIIAAFAQ 74
A+I+ +AQ
Sbjct: 297 NAMISGYAQ 305
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++R C A R+G A+++V ++L+ KC +F +MP R+V
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195
Query: 63 VSWTAIIAAFA 73
V+W A++A +A
Sbjct: 196 VAWNAMLAGYA 206
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G Q L +SG ++ G+SL+S K G +F++M V++ VS
Sbjct: 344 ACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVS 403
Query: 65 WTAIIAAFAQEWEVDMCY 82
++A+++ + Q + D +
Sbjct: 404 YSALVSGYVQNGKADEAF 421
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
V VG++L+ KCG + ++FE M VRN V+W+A++ F
Sbjct: 268 VLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGF 309
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRNVVSWTAIIAAFA 73
G + + ++LI KCG ID+ + +F+ MP R++VSW +IA +
Sbjct: 466 GIASETSICNALIDMYAKCGR-IDLSRQIFDVMPARDIVSWNTMIAGYG 513
>gi|302788580|ref|XP_002976059.1| hypothetical protein SELMODRAFT_104710 [Selaginella
moellendorffii]
gi|300156335|gb|EFJ22964.1| hypothetical protein SELMODRAFT_104710 [Selaginella
moellendorffii]
Length = 699
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +++ G L + SG + + VG++L++ GKCG ++F+ M R+V
Sbjct: 17 LKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDGMDHRDV 76
Query: 63 VSWTAIIAAFAQ 74
+SW A+I A+AQ
Sbjct: 77 ISWNAVITAYAQ 88
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G + L + G + + VG++L+S CG D + F+KM RNV
Sbjct: 223 LAACTGPEMLEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNV 282
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAA+
Sbjct: 283 VSWNAMIAAYVH 294
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G + L G + ++VG++L+ GKC + FE++ ++ S
Sbjct: 488 ACAGEASLAEGRRVHELIAERGADSELFVGNALVDMFGKCASLGGARQAFERIRAKDASS 547
Query: 65 WTAIIAAFAQEWEVD 79
W ++AA AQ + +
Sbjct: 548 WNVLVAALAQNGDAE 562
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVR- 60
V++C + + L G + ++V +G++L++ KCG +FE+M +R
Sbjct: 119 VSACCDPSALEAANRIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRD 178
Query: 61 NVVSWTAIIAAFAQE 75
+VV WT +I+ +AQ+
Sbjct: 179 DVVLWTTMISVYAQD 193
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC + G Q L V+ + ++++VGSSL+ K G+ + ++FE +P R+V
Sbjct: 159 LTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDV 218
Query: 63 VSWTAIIAAFAQ 74
VS TAIIA +AQ
Sbjct: 219 VSCTAIIAGYAQ 230
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R +R G + +++ ++ Y+ + L+ F GKC D K+ ++MP +NV
Sbjct: 58 LNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 117
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 118 VSWTAMISRYSQ 129
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C +R + +SLI KCG ++F+ MP R +SW A++ +++
Sbjct: 272 GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSK 331
>gi|115482524|ref|NP_001064855.1| Os10g0477200 [Oryza sativa Japonica Group]
gi|110289259|gb|AAP54276.2| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|110289260|gb|ABG66139.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639464|dbj|BAF26769.1| Os10g0477200 [Oryza sativa Japonica Group]
gi|215695099|dbj|BAG90290.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 699
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + C A RSG ++N++V S L+ GK G+ K+F ++ +NVV+W +I+A++ Q
Sbjct: 247 GKEVHCYAFRSGLISNIFVSSKLVDLYGKTGDVGTADKVFRRISNKNVVTWNSILASYRQ 306
Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +R G NVY+GSSLI +CGE +F + +N W +I ++
Sbjct: 63 GKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGYARSVFAAIEEKNATVWNELIRSYIN 122
Query: 75 E 75
E
Sbjct: 123 E 123
>gi|255554336|ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542804|gb|EEF44341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG ++ G L+++ GFV + V +SL+S KCGE + K+F++MP R+V SW
Sbjct: 138 CGEIGHLIAGKIIHGLSLKIGFVLDTVVANSLMSMYCKCGEFSEALKLFDEMPERSVGSW 197
Query: 66 TAIIAAFA 73
+IA ++
Sbjct: 198 NVVIAGYS 205
>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 836
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I+ GTQ + G ++V V +S+++ +CG+ + K+F+ + V+N+
Sbjct: 514 IRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVKNL 573
Query: 63 VSWTAIIAAFAQ 74
+SW A++AAFAQ
Sbjct: 574 ISWNAMMAAFAQ 585
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
A++SG + V VG+++I+ +CG+ F MP+R+ +SWTA+I AF+Q ++D
Sbjct: 401 AIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDID 458
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S +++ G +R + ++GS LI KCG ++F + +N
Sbjct: 281 LSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQ 340
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ AQ
Sbjct: 341 VSWTCLISGVAQ 352
>gi|410109983|gb|AFV61071.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
canescens]
Length = 391
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 273 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
>gi|410109997|gb|AFV61078.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
montevidensis]
Length = 402
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 270 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 329
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 330 WNSIIFAYAQ 339
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ ++ C T V
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVTLFV 45
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G Q A++ G ++++VGS+L+ KCGE + ++F MP +N
Sbjct: 236 LKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNA 295
Query: 63 VSWTAIIAAFAQ 74
VSW A++ FAQ
Sbjct: 296 VSWNALLNGFAQ 307
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S ++ G ++SG + ++ +SL++ KCG K+F ++P R+VVS
Sbjct: 137 TCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVS 196
Query: 65 WTAIIAAFAQE 75
WTA+I F E
Sbjct: 197 WTALITGFVAE 207
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + G Q +A+++G +++V S+L+ KCG D +F+ + R+
Sbjct: 640 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699
Query: 63 VSWTAIIAAFAQ 74
VSW II ++Q
Sbjct: 700 VSWNTIICGYSQ 711
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ N+R G LA+R G + ++ L+ KCG D K+F ++ +VVSW
Sbjct: 340 CANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSW 399
Query: 66 TAIIAAFAQE 75
+AII Q+
Sbjct: 400 SAIITCLDQK 409
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC S ++ G Q V++ N +VG++L+ K D +F ++ R++ +
Sbjct: 541 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA 600
Query: 65 WTAIIAAFAQE 75
WT I+A +AQ+
Sbjct: 601 WTVIVAGYAQD 611
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + + + G Q CL V+ G + GSSLI KCG + +F MP RNV
Sbjct: 518 VSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNV 577
Query: 63 VSWTAIIAAF 72
VS A+IA +
Sbjct: 578 VSINALIAGY 587
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G Q + +++ F +N++V ++L+ K G + K FE M + + V
Sbjct: 418 SACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNV 477
Query: 64 SWTAIIAAFAQE 75
SW AII + QE
Sbjct: 478 SWNAIIVGYVQE 489
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ S + G+ A++ G NVYVGS+L++ KC + ++F + RN+
Sbjct: 316 LSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNI 375
Query: 63 VSWTAIIAAFAQ 74
V W A++ FAQ
Sbjct: 376 VLWNAMLGGFAQ 387
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN-VV 63
+C +++ G + L +GF + SSLI KCG+ ++F +MP RN V+
Sbjct: 723 ACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVI 782
Query: 64 SWTAIIAAFAQ 74
SW ++I A+
Sbjct: 783 SWNSMIVGLAK 793
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
M +++C ++I G Q C + GF + LI KC D +F+
Sbjct: 147 MVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNL 206
Query: 61 NVVSWTAIIAAFAQE 75
+ VSWT +IA + ++
Sbjct: 207 DTVSWTTLIAGYVRD 221
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +R G + L V+SGF +++ + L + KC + + K+F++MP R++VSW
Sbjct: 145 CGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSW 204
Query: 66 TAIIAAFAQ 74
I+A ++Q
Sbjct: 205 NTIVAGYSQ 213
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P S + R IR G + A+R+GF + V + ++L+ KCG +F+ M R
Sbjct: 243 LPAVS--ALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLER 300
Query: 61 NVVSWTAIIAAFAQ 74
NVVSW ++I A+ Q
Sbjct: 301 NVVSWNSMIDAYVQ 314
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G L+V NV V +SLIS KC E MF K+ R +VS
Sbjct: 346 ACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVS 405
Query: 65 WTAIIAAFAQ 74
W A+I FAQ
Sbjct: 406 WNAMILGFAQ 415
>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
Length = 626
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ G+ + G Q V G NV V SS + KCG ++ K+F++M VRN
Sbjct: 250 MTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSMVEARKVFDRMLVRNE 309
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW A++ + Q E +
Sbjct: 310 VSWCALLGGYCQNGEYE 326
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G + C +R G +V V S+L+ KCG Y +FE VRN ++
Sbjct: 351 ACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTIT 410
Query: 65 WTAIIAAFAQ 74
W A+I FAQ
Sbjct: 411 WNAMIGGFAQ 420
>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g05340-like [Brachypodium distachyon]
Length = 614
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N+YV + LI+ KCGE + ++F + P +N +SW +IIAAFA+
Sbjct: 343 GKQIHALVIKKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFAR 402
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ L V GF A V VG++L++ +C + F M RNV
Sbjct: 130 LSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGMAERNV 189
Query: 63 VSWTAIIAAFAQE 75
++WTA+I+ A+E
Sbjct: 190 ITWTAMISGMARE 202
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G Q L V++G +++V S L+ KCG D +F + +S
Sbjct: 232 ACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEIS 291
Query: 65 WTAIIAAFAQ 74
T I+ FAQ
Sbjct: 292 LTVILVGFAQ 301
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
++L+S +CG + + ++F++M +R+ VSW ++I + E
Sbjct: 59 NALVSMYARCGRHAEAARVFDEMRIRDSVSWNSLIGSSGAE 99
>gi|242057853|ref|XP_002458072.1| hypothetical protein SORBIDRAFT_03g026480 [Sorghum bicolor]
gi|241930047|gb|EES03192.1| hypothetical protein SORBIDRAFT_03g026480 [Sorghum bicolor]
Length = 579
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 15 GTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q ++ GF +N +V +SLIS CG +D+ ++FE+M VR+VVSW ++I
Sbjct: 358 GRQVHARTIKDGFGRSNTFVSNSLISMYSSCGATLDLEQVFEEMTVRDVVSWNSVIQGLG 417
Query: 74 Q 74
Q
Sbjct: 418 Q 418
>gi|302776814|ref|XP_002971551.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
gi|300160683|gb|EFJ27300.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
Length = 505
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
G+ ++V + ++L+ GKCG D +F+KMP R++V+W A+IAA++Q + D +
Sbjct: 221 GYCSDVILDTALVDMYGKCGSLDDARMVFDKMPARDIVTWNAMIAAYSQHGQGDKAF 277
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S +++ G + SG + ++ +L++ K G + ++F MP NV
Sbjct: 97 ITACCSLKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRIFHSMPTDNV 156
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
V+W +IAAF+Q + + F
Sbjct: 157 VAWNVMIAAFSQSDQPSLALEF 178
>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
Length = 749
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C T ++ +A+R GF + V VG++++ KCGE + + F+++ ++N+V+
Sbjct: 461 ACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVT 520
Query: 65 WTAIIAAFA 73
W+A+IAA+
Sbjct: 521 WSAMIAAYG 529
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S+R++ G L + GF +++V +SLI KC + +K+F ++ RN
Sbjct: 257 LKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNN 316
Query: 63 VSWTAIIAAF 72
VSW ++++ F
Sbjct: 317 VSWNSMLSGF 326
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C+ +R G AN V S+LI KC +++F +M R+VVSW+ +I+ FA
Sbjct: 374 HCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAH 429
>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
Length = 749
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C T ++ +A+R GF + V VG++++ KCGE + + F+++ ++N+V+
Sbjct: 461 ACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVT 520
Query: 65 WTAIIAAFA 73
W+A+IAA+
Sbjct: 521 WSAMIAAYG 529
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S+R++ G L + GF +++V +SLI KC + +K+F ++ RN
Sbjct: 257 LKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNN 316
Query: 63 VSWTAIIAAF 72
VSW ++++ F
Sbjct: 317 VSWNSMLSGF 326
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
C+ +R G AN V S+LI KC +++F +M R+VVSW+ +I+ FA
Sbjct: 374 HCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAH 429
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS + I G ++ GF A V+V SSL+ GKCG D K+F+ M +NV
Sbjct: 1284 LKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNV 1343
Query: 63 VSWTAIIAAFAQ 74
V+W ++I + Q
Sbjct: 1344 VTWNSMIVGYVQ 1355
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T NI+ G + C +R ++V V +S+I KC D K+F+ R++
Sbjct: 1486 LSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDL 1545
Query: 63 VSWTAIIAAFAQ 74
V W ++AA+AQ
Sbjct: 1546 VLWNTLLAAYAQ 1557
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R + G Q +++G F N YV + L+ F KC ++F ++ VRNV
Sbjct: 1184 CVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVF 1243
Query: 64 SWTAIIA 70
SW AI+
Sbjct: 1244 SWAAIVG 1250
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +A+ + + +GSS+I+F K G D +F +M ++VV+W +I+++ Q
Sbjct: 1397 GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 1456
Query: 75 EWEV----DMCY 82
+V +MC+
Sbjct: 1457 HHQVGKALNMCH 1468
>gi|255562005|ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538815|gb|EEF40415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 585
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPV 59
V++C + G + A++SG V +V VG SL+ KC G D K+F++M
Sbjct: 287 VSACAELGLLSLGKELHSWAIKSGLVYDVCVGCSLVDMYAKCAVDGSLDDSRKVFDRMTN 346
Query: 60 RNVVSWTAIIAAFAQEWEVDM 80
NV+SWTAII + Q DM
Sbjct: 347 HNVMSWTAIITGYVQNGRSDM 367
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ S I G Q ++S F N+++ ++LIS +CG+ +++F M RNV
Sbjct: 493 LSGASSIGAIGKGEQIHARILKSDFKTNLHISNALISMYSRCGDIEAAFQVFNGMGDRNV 552
Query: 63 VSWTAIIAAFAQ 74
+SWT++I +A+
Sbjct: 553 ISWTSMITGYAK 564
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G Q+ AV+ GF + VG+SLIS +C + K F+ + +N+
Sbjct: 392 LKACANLSDLHLGEQFYAHAVKLGFASVNCVGNSLISMYSRCDNMENARKAFDVLFEKNL 451
Query: 63 VSWTAIIAAFAQ 74
VS+ I+ A+A+
Sbjct: 452 VSYNTIVEAYAK 463
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGK-CGENIDVYKMFEKMPVR 60
+ SC + N G ++ G++ ++V VG +LI K CG+ K+F+ M R
Sbjct: 184 IKSCSNRENFSYGEIIFGSLIKCGYLNSHVCVGCALIDMYAKGCGDVEGACKVFDNMSER 243
Query: 61 NVVSWTAIIAAFAQ 74
N+V+WT +I+ F Q
Sbjct: 244 NIVTWTLMISRFQQ 257
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRN 61
+ SC + N + G +SG + + +SLIS KCGE +F M R+
Sbjct: 82 LKSCIRSNNFQKGKLVHNCLTQSGLELDSVILNSLISLYSKCGELNSANDIFISMGNKRD 141
Query: 62 VVSWTAIIAAFA 73
+VSW+A+I+ +A
Sbjct: 142 LVSWSALISCYA 153
>gi|125526167|gb|EAY74281.1| hypothetical protein OsI_02170 [Oryza sativa Indica Group]
Length = 384
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C +T N+ QC AVR G + + ++LI KCG + +F++M RNV
Sbjct: 140 LTACSATANLMYSMLVQCKAVRHGSTSQTILCNALIDMYAKCGRTMAARIVFDQMVCRNV 199
Query: 63 VSWTAIIAAFA 73
VSW+++I A++
Sbjct: 200 VSWSSMIDAYS 210
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +R G + L V+SGF +++ + L + KC + + K+F++MP R++VSW
Sbjct: 145 CGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSW 204
Query: 66 TAIIAAFAQ 74
I+A ++Q
Sbjct: 205 NTIVAGYSQ 213
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P S + R I G + A+RSGF + V + ++L+ KCG ++F+ M R
Sbjct: 243 LPAVS--ALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLER 300
Query: 61 NVVSWTAIIAAFAQ 74
NVVSW ++I A+ Q
Sbjct: 301 NVVSWNSMIDAYVQ 314
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G L+V G NV V +SLIS KC E MF K+ R +VS
Sbjct: 346 ACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS 405
Query: 65 WTAIIAAFAQ 74
W A+I FAQ
Sbjct: 406 WNAMILGFAQ 415
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+ +RS NV+V ++L+ KCG + +F+ M R+V +W A+I +
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC + G Q L V+ + ++++VGSSL+ K G+ + ++FE +P R+V
Sbjct: 160 LTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDV 219
Query: 63 VSWTAIIAAFAQ 74
VS TAIIA +AQ
Sbjct: 220 VSCTAIIAGYAQ 231
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R +R G + +++ ++ Y+ + L+ F GKC D K+ ++MP +NV
Sbjct: 59 LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 119 VSWTAMISRYSQ 130
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C +R + +SLI KCG ++F+ MP R +SW A++ +++
Sbjct: 273 GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSK 332
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C I+ G + VR G NVYVG+S++ KCG+ +K F+K+ +N++S
Sbjct: 305 ACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILS 364
Query: 65 WTAIIAAFA 73
W+A+IA +
Sbjct: 365 WSAMIAGYG 373
>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
Length = 666
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +++ G L + SG + + VG++L++ GKCG ++F+ M R+V
Sbjct: 13 LKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDGMDHRDV 72
Query: 63 VSWTAIIAAFAQ 74
+SW A+I A+AQ
Sbjct: 73 ISWNAVITAYAQ 84
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G + L + G + + VG++L+S CG D + F+KM RNV
Sbjct: 224 LAACTGPEMLEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNV 283
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAA+
Sbjct: 284 VSWNAMIAAYVH 295
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
V++C + G + L G + ++V +G++L++ KCG +FE+M +R+
Sbjct: 115 VSACCDPSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRD 174
Query: 62 VVSWTAIIAAFAQEWEVDM 80
VVSW AII+A A+ D+
Sbjct: 175 VVSWNAIISALARHDRKDI 193
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q + SG A+ VG++++ KC D F+++P +N+
Sbjct: 325 LSACSTPAAFEDGLQLHSIVRESGLEADASVGNAVVHMFAKCWSLDDALAAFQRIPQKNL 384
Query: 63 VSWTAIIAAF 72
SW ++ A+
Sbjct: 385 GSWNGLLGAY 394
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + L G + ++VG++L+ GKC + FE++ ++ S
Sbjct: 459 ACAGEALLAEGRRIHELIGERGADSELFVGNALVDMFGKCASLGGARQAFERIRGKDASS 518
Query: 65 WTAIIAAFAQEWEVD 79
W ++AA AQ + +
Sbjct: 519 WNVLVAALAQNGDAE 533
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G L R GF ++++V S LI+F G D K+FE+M R+VVSWT +I+AFAQ
Sbjct: 141 GDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQ 200
Query: 75 --EWE 77
+W+
Sbjct: 201 CGQWD 205
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG R + G G A+V + ++LI KCG D +K F+ MP+RN
Sbjct: 230 LSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNT 289
Query: 63 VSWTAIIAAFAQ 74
SW +I F Q
Sbjct: 290 KSWNTLIDGFVQ 301
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++ + +SLI+ KCG+ +FE M R++VSWTA++ + +
Sbjct: 358 DIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVK 402
>gi|242040057|ref|XP_002467423.1| hypothetical protein SORBIDRAFT_01g027765 [Sorghum bicolor]
gi|241921277|gb|EER94421.1| hypothetical protein SORBIDRAFT_01g027765 [Sorghum bicolor]
Length = 682
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 3 VTSC---GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
VT+C G G L ++G + NVY+G++L+ CG G + ++F +MP
Sbjct: 48 VTACEHRGWQEGAACGAAIHALTHKAGLMGNVYIGTALLHLCGSRGLVSNAQRLFWEMPQ 107
Query: 60 RNVVSWTAIIAAFA 73
RNVVSWTA++ A +
Sbjct: 108 RNVVSWTALMVALS 121
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ CGS + G Q V SG + +V V +SL++ G D ++F++M R+
Sbjct: 152 VSLCGSLEDEAAGLQVTAHVVVSGLLTHVSVANSLLTMFGNLRRVQDAERLFDRMEERDR 211
Query: 63 VSWTAIIAAFAQEWEVDMCYTFI 85
+SW A+I+ ++ E C+ +
Sbjct: 212 ISWNAMISMYSHEEVYSKCFMVL 234
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C S + G+ L V SG ++V + ++L++ G+ + +F M R+V
Sbjct: 253 VSVCASLDLVALGSGIHSLCVTSGLHSSVPLSNALVNMYSAAGKLDEAESLFWNMSRRDV 312
Query: 63 VSWTAIIAAFAQ 74
+SW +I+++ Q
Sbjct: 313 ISWNTMISSYVQ 324
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
G ++G +++ YV +SLI+ CG+ +F ++ ++ +SW AIIAA
Sbjct: 469 GMPLHAYITQTGLLSDEYVTNSLITMYATCGDLESSTDIFCRINNKSAISWNAIIAA 525
>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G Q L ++ F N+YV ++LI GKCG D K+ KMP R+ V+
Sbjct: 169 ACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVT 228
Query: 65 WTAIIAAFA 73
W ++I A A
Sbjct: 229 WNSVITACA 237
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G Q +++GF A+ ++ + L+ +CG D +FE MP+RN+ SW AI++ +
Sbjct: 78 GKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVY 135
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C T ++R G + A+ G ++ +VG +L+ KC + F+++ ++V
Sbjct: 441 LTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDV 500
Query: 63 VSWTAIIAAFAQEWEVD 79
+W A+I+ + + +++
Sbjct: 501 PTWNALISGYTRSNQIE 517
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q R F++N V ++L+ +CG+ K+F K V+NV+S
Sbjct: 306 ACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLS 365
Query: 65 WTAIIAAFAQEWEV 78
+I + + +V
Sbjct: 366 CNTMIVGYCESGDV 379
Score = 35.0 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q +++ G+ +V++G++L+ KCG ++++ N+VS
Sbjct: 579 ACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVS 638
Query: 65 WTAIIAAFA 73
A++ A A
Sbjct: 639 HNAMLTACA 647
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CGS ++ G Q VRS F ++YV S LI+ KCG+ + ++F++ +++
Sbjct: 337 LSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDI 396
Query: 63 VSWTAIIAAFAQ 74
V W +IIA +AQ
Sbjct: 397 VMWNSIIAGYAQ 408
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
N + L+S K G + K+F+KMP RNVVSWT+++ + QE +D
Sbjct: 77 NTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLID 126
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 28 VANVYVGSSLISFCGKCGEN--IDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
V +V +++I G C E + ++F++MP RNVV+WT++I+ +A +VD+
Sbjct: 168 VKDVVASTNMIG--GLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDV 220
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + ++ G +R+GF + ++VG+SL++ GKCG +FEKM +R+V
Sbjct: 235 VDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDV 294
Query: 63 V---SWTAIIAAFAQ 74
+ SWT IIAAFA
Sbjct: 295 LSVYSWTVIIAAFAH 309
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S + G V +G V VG+++++ GKCG + +FE++P RN+
Sbjct: 134 LTACSSAGALNEGKAIHDCVVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNL 192
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAA AQ
Sbjct: 193 VSWNALIAANAQ 204
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G + SG N Y+ + LI KCG D ++FE +P NV SW
Sbjct: 36 CAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEVFELLPCPNVFSW 95
Query: 66 TAIIAAFAQE 75
TA+I A+A+E
Sbjct: 96 TALITAYAKE 105
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ Q V SGF ++V + L++ GKCG + +FE + R+VV+
Sbjct: 437 SCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVA 496
Query: 65 WTAIIAAFA 73
W ++++AFA
Sbjct: 497 WNSMLSAFA 505
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S +++ G Q + + + +++I+ GKCG + F KMP R+V+S
Sbjct: 634 ACSSLKDLTRGRQLHARILLEN-IHEANLSNAVINMYGKCGSLDEAMDEFVKMPERDVIS 692
Query: 65 WTAIIAAFAQ 74
W +IA +AQ
Sbjct: 693 WNTMIATYAQ 702
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P + G T + T CL G V ++L++ +CG D +F + R
Sbjct: 738 VPSLALGKTIHSIVATAAPCLEQDPG------VATALVTMYARCGSLHDAKSVFWRSHSR 791
Query: 61 NVVSWTAIIAAFAQ 74
N+V+W+ +IAA AQ
Sbjct: 792 NLVTWSNLIAACAQ 805
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S+ ++ G Q ++ G +NV+V ++++ KCGE + K+FE++P RN
Sbjct: 345 LQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND 404
Query: 63 VSWTAIIAAFAQ 74
V+W II + Q
Sbjct: 405 VTWNTIIVGYVQ 416
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC G A++ + +++VG +L+ K GE ID ++FE+MP ++
Sbjct: 244 LKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDL 303
Query: 63 VSWTAIIAAFAQ 74
+ W+ +IA +AQ
Sbjct: 304 IPWSLMIARYAQ 315
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L +++ + + V +SLI KCG D F+KM R+ VSW A+I ++
Sbjct: 458 GLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYS 516
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G + +R G + VG++LI KCG K+F+KM R+VVS
Sbjct: 223 ACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVS 282
Query: 65 WTAIIAAFAQEWEVDMC 81
W IA +AQ D C
Sbjct: 283 WNVAIAGYAQNGRFDEC 299
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ G +V V ++LI+ KCG D ++F+KM RN+VSWTA+++ +AQ
Sbjct: 140 ISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQ 191
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + + ++ G Q CL V+ G + GSSLI KCG + +F MP RNV
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNV 577
Query: 63 VSWTAIIAAF 72
VS A+IA +
Sbjct: 578 VSVNALIAGY 587
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G Q + +++ F +N++V ++L+ K G + K FE M + + V
Sbjct: 418 SACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNV 477
Query: 64 SWTAIIAAFAQE 75
SW AII + QE
Sbjct: 478 SWNAIIVGYVQE 489
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G+ A + G NVYVGS+L++ KC + ++F + RN+V W A++ FAQ
Sbjct: 328 GSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQ 387
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
+C +++ G + L +GF + SSLI KCG+ ++F +MP R NV+
Sbjct: 723 ACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVI 782
Query: 64 SWTAIIAAFAQ 74
SW ++I A+
Sbjct: 783 SWNSMIVGLAK 793
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
M +++C +++ G Q C ++GF + LI KC D +F+
Sbjct: 147 MVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNL 206
Query: 61 NVVSWTAIIAAFAQE 75
+ VSWTA+IA + ++
Sbjct: 207 DTVSWTALIAGYVRD 221
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G AV++ N++VGS+L+ GKCG D + F++MP +N+
Sbjct: 317 LSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376
Query: 63 VSWTAIIAAFAQEWEVDM 80
V+ ++I +A + +VDM
Sbjct: 377 VTLNSLIGGYAHQGQVDM 394
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L RSGF +V V + LI F GKC + +F +M ++N VSW +++AA+ Q
Sbjct: 228 GMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQ 287
Query: 75 EWE 77
E
Sbjct: 288 NHE 290
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
G Q LAV+ G + +V+VG S K D K+F+++P RN+ +W A I+
Sbjct: 127 GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYIS 182
>gi|449532090|ref|XP_004173017.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Cucumis sativus]
Length = 472
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +CG ++R G + CL ++S F A+V VG+SLI KCG ++ K+F M N
Sbjct: 186 LNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLN 245
Query: 62 VVSWTAIIAAFA 73
+V+WT +I+ +
Sbjct: 246 IVTWTTMISCYG 257
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + C ++ GFV V VGS+++ F KCG D K+F+ M ++ VSW ++I+ + +
Sbjct: 97 GKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGR 156
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 47/78 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G + +++G + +V+VGSSL++ KC + +D K+F++ P R+V
Sbjct: 113 LKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDV 172
Query: 63 VSWTAIIAAFAQEWEVDM 80
W A+I+ + ++ + +M
Sbjct: 173 GCWNAVISCYFKDGKAEM 190
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC N+ G + + + + +V S+L+ GKCG ++FEK+P +N
Sbjct: 214 VSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNA 273
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
++W A+I ++ + + C ++
Sbjct: 274 ITWNAMITGYSLKGDSRSCIELLM 297
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + + AN V +L+ KCG+ + K+F ++P R++
Sbjct: 416 LSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDL 475
Query: 63 VSWTAIIAAFA 73
VSWT++I A+
Sbjct: 476 VSWTSMIFAYG 486
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + GS + GTQ ++ G+ ++VYVGS+L+ +CG F+ MP ++
Sbjct: 196 LKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSE 255
Query: 63 VSWTAIIAAFAQEWE 77
VSW A+I+ A++ E
Sbjct: 256 VSWNALISGHARKGE 270
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 23 VRSGFVANVYVGSSLI-SFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V S F+ N V ++I + KCG D +MF++MP +++V+WTA+IA F+Q
Sbjct: 114 VDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQ 166
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G ++SG ++G++L+ K G D ++F+++ +V
Sbjct: 297 LSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDV 356
Query: 63 VSWTAIIAAFAQ 74
VSW ++ AQ
Sbjct: 357 VSWNTMLTGCAQ 368
>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 923
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRG-GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+C R G L ++G + NVY+G++L+ G +D ++F +MP RN
Sbjct: 50 VTACERWEEGRACGAAIHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERN 109
Query: 62 VVSWTAIIAAFA 73
VVSWTA++ A +
Sbjct: 110 VVSWTALMVALS 121
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ CGS + G Q + SG V V +SLIS G G D K+F +M R+
Sbjct: 152 VSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKLFYRMEERDT 211
Query: 63 VSWTAIIAAFAQE 75
VSW A+++ ++ E
Sbjct: 212 VSWNALVSMYSHE 224
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
TS RN G + +GF+++ YV +SLI+ KCG+ +F+++ R+VV
Sbjct: 460 TSSNDLRNY--GLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVV 517
Query: 64 SWTAIIAAFAQ 74
SW A+IAA Q
Sbjct: 518 SWNAMIAANVQ 528
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + ++ N+ VG+SLI+ GKC D ++F+ MP +VVS
Sbjct: 357 ACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVS 416
Query: 65 WTAIIAAFA 73
+I ++A
Sbjct: 417 CNILIGSYA 425
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C S+ + G+ L +R+G + + V ++L++ G+ D +F M R++
Sbjct: 254 ISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDL 313
Query: 63 VSWTAIIAAFAQ 74
+SW +I+++ Q
Sbjct: 314 ISWNTMISSYVQ 325
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + GS + GTQ ++ G+ ++VYVGS+L+ +CG F+ MP ++
Sbjct: 196 LKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSE 255
Query: 63 VSWTAIIAAFAQEWE 77
VSW A+I+ A++ E
Sbjct: 256 VSWNALISGHARKGE 270
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 23 VRSGFVANVYVGSSLI-SFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V S F+ N V ++I + KCG D +MF++MP +++V+WTA+IA F+Q
Sbjct: 114 VDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQ 166
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G ++SG ++G++L+ K G D ++F+++ +VV
Sbjct: 298 SACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVV 357
Query: 64 SWTAIIAAFAQ 74
SW ++ AQ
Sbjct: 358 SWNTMLTGCAQ 368
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + N+R G Q + G N++VG+ LI+ GKCG + + ++M ++V
Sbjct: 140 LKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDV 199
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +++A +AQ + D
Sbjct: 200 VSWNSMVAGYAQNMQFD 216
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G + R N+ + +SLI +CG D ++F++M R+V S
Sbjct: 311 ACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVAS 370
Query: 65 WTAIIAAFA 73
WT++I+A+
Sbjct: 371 WTSLISAYG 379
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G Q L +S ++ +VY+GS+L+ KCG + F+ M VRN+
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217
Query: 63 VSWTAIIAAFAQ 74
VSW ++I + Q
Sbjct: 218 VSWNSLITCYEQ 229
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +C + +++ G Q ++ GF ++++VG+SLI KCG D +FE+
Sbjct: 392 LNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFER 451
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+VVSW A+I +AQ
Sbjct: 452 MVERDVVSWNAMIVGYAQ 469
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAV-RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
V++C S IR G Q V R + ++ +G++L+ KC + +F++MP+RN
Sbjct: 259 VSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRN 318
Query: 62 VVSWTAIIAAFAQEWEV 78
VVS T+++ +A+ V
Sbjct: 319 VVSETSMVCGYARAASV 335
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 36/60 (60%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
+++ F + +++ + L+ GKCG D K+F++MP RN S+ A+++ + ++D +
Sbjct: 46 IKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAF 105
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G +G+ ++ V ++L+S GKCG K+F++M +RNV
Sbjct: 168 LSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNV 227
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+++A
Sbjct: 228 VSWTAMISSYAH 239
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + V +GF + +SL++ KCG + ++F+ M R V
Sbjct: 67 LAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTV 126
Query: 63 VSWTAIIAAFAQE 75
VSWT II+A+ ++
Sbjct: 127 VSWTGIISAYVRK 139
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 3 VTSCGSTRNIRGG--TQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+++C S N G + + +G + + ++L++ KCG+ K+F+ M VR
Sbjct: 266 LSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVR 325
Query: 61 NVVSWTAIIAAFAQEWE----VDMC 81
+ +SW+ +IAA+ Q V+MC
Sbjct: 326 DTMSWSTLIAAYTQHGRGGEAVEMC 350
>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+++ G ++V VGSSLIS GKCG + K+F++MP RNV +W A+I +
Sbjct: 72 SIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGY 122
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G + L G N +V ++LI KCG+ + +FE + VR+V
Sbjct: 281 LSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSV 340
Query: 63 VSWTAIIAAFA 73
++I+ A
Sbjct: 341 ACCNSMISCLA 351
>gi|110738160|dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana]
Length = 328
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + I G++ +AV+ GF+ +V VG+SL+ KCG+ D K+F+ + ++V
Sbjct: 188 VSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDV 247
Query: 63 VSWTAIIAAFAQ 74
+W ++I + Q
Sbjct: 248 YTWNSMITGYCQ 259
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + ++ G + ++ G + + V +S+++ KCGE K F +M R+V
Sbjct: 17 LQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDV 76
Query: 63 VSWTAIIAAFAQ 74
++W +++ A+ Q
Sbjct: 77 IAWNSVLLAYCQ 88
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + + ++ G Q CL V+ G + GSSLI KCG + +F MP RNV
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNV 577
Query: 63 VSWTAIIAAF 72
VS A+IA +
Sbjct: 578 VSVNALIAGY 587
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G Q + +++ F +N++V ++L+ K G + K FE M + + V
Sbjct: 418 SACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNV 477
Query: 64 SWTAIIAAFAQE 75
SW AII + QE
Sbjct: 478 SWNAIIVGYVQE 489
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G+ A + G NVYVGS+L++ KC + ++F + RN+V W A++ FAQ
Sbjct: 328 GSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQ 387
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
+C +++ G + L +GF + SSLI KCG+ ++F +MP R NV+
Sbjct: 723 ACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVI 782
Query: 64 SWTAIIAAFAQ 74
SW ++I A+
Sbjct: 783 SWNSMIVGLAK 793
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
M +++C +++ G Q C ++GF + LI KC D +F+
Sbjct: 147 MVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNL 206
Query: 61 NVVSWTAIIAAFAQE 75
+ VSWTA+IA + ++
Sbjct: 207 DTVSWTALIAGYVRD 221
>gi|410110003|gb|AFV61081.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
alba]
Length = 358
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 273 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ ++ C T V
Sbjct: 4 AKCRRVXDANKVFKYMGERNAVSWNALIGGYAEMGNLERCXTLFV 48
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V CG + G Q + GF NV+VGSSL+ +CGE + +F+++ +N
Sbjct: 202 VKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNE 261
Query: 63 VSWTAIIAAFAQEWE 77
VSW A+I+ FA++ E
Sbjct: 262 VSWNALISGFARKGE 276
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 38/70 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G + S F ++ + +S++ KCG ++F++M V++VV+W
Sbjct: 101 CTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTW 160
Query: 66 TAIIAAFAQE 75
T++I ++Q+
Sbjct: 161 TSMITGYSQD 170
>gi|410110043|gb|AFV61101.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
velutina]
Length = 357
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 255 SCSDLATLHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 314
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 315 WNSIIFAYAQ 324
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G + GF ++V V ++++ GKCG D ++FE+MP N
Sbjct: 211 ISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNT 270
Query: 63 VSWTAIIAAFAQ 74
VSW AI+AA Q
Sbjct: 271 VSWNAIVAACTQ 282
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ G + +G NV VG+SLI GKCG D ++F+K+ +++VVSW
Sbjct: 113 CSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSW 172
Query: 66 TAIIAAFAQ 74
T++I + Q
Sbjct: 173 TSMIMTYVQ 181
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G A+ GF A+ VG++LI+ KCG + ++F + +N+
Sbjct: 512 LNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQCG-KNL 570
Query: 63 VSWTAIIAAFAQ 74
VSW I AA+ Q
Sbjct: 571 VSWNTIAAAYVQ 582
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
G+ + VG++++S G+ G + + FE++ R+ SW I+ A AQ EV+
Sbjct: 735 GYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVE 788
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G ++ G+ ++ VG+ +++ CG + F M R+
Sbjct: 313 LNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDA 372
Query: 63 VSWTAIIAAFAQ 74
+SW II+ AQ
Sbjct: 373 ISWNTIISGHAQ 384
>gi|255566993|ref|XP_002524479.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536267|gb|EEF37919.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 576
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG RN+ G Q L+++ G+ +V VG+ LIS KC D +F+ M RNV
Sbjct: 285 ISACGHERNLEVGRQVHGLSIKRGYGKHVSVGNVLISTYSKCEIIEDAKLVFQNMLERNV 344
Query: 63 VSWTAIIA 70
VSWT +I+
Sbjct: 345 VSWTTMIS 352
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G ++SGF V +S I+ K G D K+FE++ R +++W A+I+
Sbjct: 390 VESGKTVHGFCIKSGFSLEPSVQNSFITMYAKFGSAEDSMKVFEELNYREIITWNALISG 449
Query: 72 FAQ 74
+AQ
Sbjct: 450 YAQ 452
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C G Q ++ G V+VG++LI+ + G ++ ++FE+M ++VSW
Sbjct: 186 CSRIEEFLFGLQLHSCILKVGLDCEVFVGNALITMYSRWGCLLEAGRVFEEMQTTDLVSW 245
Query: 66 TAIIAAFAQ 74
AII+ + Q
Sbjct: 246 NAIISGYTQ 254
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + G Q +AV++G +++VGS+L+ GKCG +F+ + R++
Sbjct: 361 LSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDI 420
Query: 63 VSWTAIIAAFAQ 74
VSW II+ ++Q
Sbjct: 421 VSWNTIISGYSQ 432
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +T ++R G LA+RSG + ++G SL+ KCG D K+F K+ +VV+W
Sbjct: 61 CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120
Query: 66 TAIIAAFAQE 75
+A+I Q+
Sbjct: 121 SAMITGLDQQ 130
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK--CGENIDVYKMFEKMPVRNV 62
SC S + G Q +++ + +VG++L+ K C E+ V F+++ R++
Sbjct: 262 SCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGV--AFDRLVNRDI 319
Query: 63 VSWTAIIAAFAQ 74
SWT II+ +AQ
Sbjct: 320 FSWTVIISGYAQ 331
>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
Length = 886
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++RGG Q ++ GF ++ + ++LI KCG+ ++F+ MP RNVVSWTA++
Sbjct: 215 SLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMV 274
Query: 71 AFAQEWEVDMC 81
F E C
Sbjct: 275 GFLHHGEAREC 285
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+ G Q C ++ +V V +SL+ KCG + + F +MP RNVVSWTA+I
Sbjct: 520 VEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMI 577
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG R G Q + VR+GF + V +SL+ K D ++F+ +P RN+
Sbjct: 308 LKACGG--GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNL 365
Query: 63 VSWTAIIAAFAQ 74
+W ++I+ +A
Sbjct: 366 ATWNSMISGYAH 377
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++++ G AVR G + NV+V S+L+S +C +F+ MP R+V
Sbjct: 240 LPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDV 299
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++ A+ E D
Sbjct: 300 VSWNGVLTAYFTNREYD 316
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 39/64 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG++ + + A+R G +++ ++G++LI GKC ++F+ + V++VVS
Sbjct: 141 ACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVS 200
Query: 65 WTAI 68
WT++
Sbjct: 201 WTSM 204
>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g13770, mitochondrial-like
[Glycine max]
Length = 600
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C S R + G + +++ ++ VY+ + LI F KC D + +MP RNV
Sbjct: 33 LNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARHVLNEMPERNV 92
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+A++Q
Sbjct: 93 VSWTAMISAYSQ 104
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
L ++ F A+VYVGSSL+ K G+ + +FE +P R+VVS TAII+ +AQ
Sbjct: 152 LIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISGYAQ 205
Score = 34.7 bits (78), Expect = 8.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
V + +SLI KCG ++F+ M R V+SW A++ +++ E
Sbjct: 262 VILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGE 308
>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G C AV++ ++ VG++L+S KCG +F +MP ++VV+
Sbjct: 98 ACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVT 157
Query: 65 WTAIIAAFAQ 74
W A+I +AQ
Sbjct: 158 WNAMINGYAQ 167
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R + GT+ A + G ++V V + +++ +CGE ++F+++ R++V+W+AII
Sbjct: 2 RALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAII 61
Query: 70 AAFAQ 74
AAF Q
Sbjct: 62 AAFVQ 66
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+R G +R GF + VG+ LI KCG K+F +M ++ VSW ++A
Sbjct: 308 LRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAG 367
Query: 72 FA 73
+A
Sbjct: 368 YA 369
>gi|383173444|gb|AFG70126.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+ +C ++ G VR+GF +V+V +SL++ +CG ++DV + +F+KMP R+
Sbjct: 11 IKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCG-SVDVARHVFDKMPERD 69
Query: 62 VVSWTAIIAAFAQ 74
+VSW A+I +AQ
Sbjct: 70 LVSWNAMIDGYAQ 82
>gi|356531824|ref|XP_003534476.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Glycine max]
Length = 682
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C R + G Q A++ F+ NV V SSL++ KCG ++F+ M R
Sbjct: 426 LPV--CAQLRALEQGKQIHAYALKHWFLPNVSVASSLMTMYSKCGVVEYSRRLFDNMEQR 483
Query: 61 NVVSWTAIIAAFAQ 74
NV+SWTA+I ++ +
Sbjct: 484 NVISWTAMIDSYIE 497
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S R G + L +++G V N + +SLI KCG+ ++FE++P R+V
Sbjct: 223 IKSFAGARAFSQGLKTHGLLIKNGLVDNYILRTSLIDMYFKCGKVRLACRVFEEIPERDV 282
Query: 63 VSWTAIIAAFAQ 74
V W A++A FA
Sbjct: 283 VVWGAMLAGFAH 294
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 13 RGGTQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
R G ++ V++ + V V SSLI KCG+ I ++F RNVV WTA+++
Sbjct: 334 RLGQEFHAYVVKTKSYSKLVPVQSSLIDMYCKCGDMISARRVFYGSKERNVVCWTALMSG 393
Query: 72 FA 73
+A
Sbjct: 394 YA 395
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CG + ++ G + ++ F + +V + LI+ G G+ +F +PV+
Sbjct: 527 LSVCGERKLVKLGKEIHGQILKRDFTSVHFVSAELINMYGFFGDINKANLVFNAVPVKGS 586
Query: 63 VSWTAIIAAFA 73
++WTA+I A+
Sbjct: 587 MTWTALIRAYG 597
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G V++GF V+V SSL GKCG + K+F+++P RNVV+
Sbjct: 162 ACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEIPERNVVA 221
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 222 WNALMVGYVQ 231
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T++ + G + Q +R +++ + S+ + KCG +D K+F+ +++
Sbjct: 362 MSAAARTQDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDL 421
Query: 63 VSWTAIIAAFAQ 74
+ W ++ A+A+
Sbjct: 422 ILWNTLLGAYAE 433
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C RN+ G Q ++ G + N Y+ + L+ F KC +F K+ VRNV
Sbjct: 60 CVYKRNLCTGKQIHARILKKGDFYARNEYIETKLVIFYAKCDALEIAELLFSKLRVRNVF 119
Query: 64 SWTAIIA 70
SW AII
Sbjct: 120 SWAAIIG 126
>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 745
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R+I+ ++SGF ++++ +++IS KC ID MF++MP RN+VSW
Sbjct: 13 CIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSW 72
Query: 66 TAIIAAF 72
T +++
Sbjct: 73 TTMVSVL 79
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + N+ +Q + SG+ + VGS LI K G + ++FE++P ++VV+W
Sbjct: 352 CMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAW 411
Query: 66 TAIIAAFAQ 74
+++I A+
Sbjct: 412 SSLITGCAR 420
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG RN+ G ++ ++ + ++L+ KCG D ++F ++P +N
Sbjct: 112 LKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNA 171
Query: 63 VSWTAIIAAFAQEWEVD 79
SW +I +A++ +D
Sbjct: 172 TSWNTLILGYAKQGLID 188
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + + G Q L ++ G+ + V ++LI KCG+ D +F + +
Sbjct: 450 LKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDT 509
Query: 63 VSWTAIIAAFAQ 74
+SWT+II AQ
Sbjct: 510 MSWTSIIVGCAQ 521
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +T ++ G + +G NV VG+SLI GKCG D ++F+K+ +++VVSW
Sbjct: 113 CTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSW 172
Query: 66 TAIIAAFAQ 74
T++I + Q
Sbjct: 173 TSMIMTYVQ 181
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G + GF ++V V ++++ GKCG D ++FE+MP N
Sbjct: 211 ISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNT 270
Query: 63 VSWTAIIAAFAQ 74
VSW AI+AA Q
Sbjct: 271 VSWNAIVAACTQ 282
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
G+ + VG++++S G+ G + + FE++ R+ SW I+ A AQ EV+
Sbjct: 735 GYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVE 788
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G A+ GF A+ VG++LI+ KCG + +F + +N+
Sbjct: 512 LNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQCG-KNL 570
Query: 63 VSWTAIIAAFAQ 74
VSW I AA+ Q
Sbjct: 571 VSWNTIAAAYVQ 582
Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIR-GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C S + G Y+C+ ++ G+ ++ VG+ +++ CG + F M R+
Sbjct: 313 LNACSSPATLTFGELLYECI-LQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERD 371
Query: 62 VVSWTAIIAAFAQ 74
+SW II+ AQ
Sbjct: 372 AISWNTIISGHAQ 384
>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 770
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C T ++ G V++G + +++V +SL++ +CG + D +F++MP +NVV+W
Sbjct: 88 CIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTW 147
Query: 66 TAIIAAF 72
TA+I +
Sbjct: 148 TALITGY 154
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q +++GF+++V V S+L++ KCG K F +MP R +
Sbjct: 400 LSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTL 459
Query: 63 VSWTAIIAAFAQ 74
V+WT++I+ ++Q
Sbjct: 460 VTWTSMISGYSQ 471
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG++ ++ G Q Q + G N+ V +S + + GE + ++FE+M +V++W
Sbjct: 291 CGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITW 350
Query: 66 TAIIAAFAQ 74
A+I+ FAQ
Sbjct: 351 NAMISGFAQ 359
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ NI G Q ++ G + +G+SL K G + F+++P +NV
Sbjct: 186 LSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNV 245
Query: 63 VSWTAIIAAFAQE 75
++WT +I+A A++
Sbjct: 246 ITWTTMISACAED 258
>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
Length = 830
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G V++G V+V SSL GKCG D K+F+++P RNVV+
Sbjct: 182 ACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA 241
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 242 WNALLVGYVQ 251
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T+N++ G + QC +R +++ + S + KCG +D K+F+ +++
Sbjct: 382 MSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDL 441
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+A+
Sbjct: 442 ILWNTLLAAYAE 453
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC +F K+ VRNV
Sbjct: 80 CVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVF 139
Query: 64 SWTAIIA 70
SW AII
Sbjct: 140 SWAAIIG 146
>gi|297810463|ref|XP_002873115.1| EMB175 [Arabidopsis lyrata subsp. lyrata]
gi|297318952|gb|EFH49374.1| EMB175 [Arabidopsis lyrata subsp. lyrata]
Length = 896
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK-CGENI-DVYKMFEKMPVR 60
+T+C G Q L V+SGF+ +V+VG+SL+S K G + DV K+F+++P R
Sbjct: 188 LTACVRVSRFSLGIQIHGLIVKSGFLNSVFVGNSLMSLYSKDSGSSCDDVLKLFDEIPHR 247
Query: 61 NVVSWTAIIAAFAQE 75
+V SW +I++ +E
Sbjct: 248 DVASWNTVISSLVKE 262
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A+++G+ ++V +G+SLIS KC ++ D K+F M +VVSW
Sbjct: 531 CGTLGFREMGYQIHCYALKAGYFSDVCLGNSLISMYSKCCDSDDAIKVFNTMQEHDVVSW 590
Query: 66 TAIIAAF 72
++I+ +
Sbjct: 591 NSLISCY 597
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + ++ G + A+R G + + V ++LI F K G+ V ++E M V++
Sbjct: 292 LSSCTDSSDLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFGDMKKVESLYEMMMVQDA 351
Query: 63 VSWTAIIAAFAQEWEVD 79
V++T +I A+ VD
Sbjct: 352 VTFTEMITAYMAFGMVD 368
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + + G + A+ G +NVYVG++L+ KCG+ +F KMP +N
Sbjct: 294 LSSCAAVGALELGVELDGYALHRGLYSNVYVGTALVDMYAKCGDLEKATYVFGKMPFKNE 353
Query: 63 VSWTAIIAAFA 73
SW A+I A
Sbjct: 354 ASWNALICGLA 364
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 23 VRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VRS G + +GS+L+ KCGE + ++F+ + ++VV+W A+I +AQ
Sbjct: 212 VRSAGMEVDSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQ 264
>gi|383173448|gb|AFG70128.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+ +C ++ G VR+GF +V+V +SL++ +CG ++DV + +F+KMP R+
Sbjct: 11 IKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCG-SVDVARHVFDKMPERD 69
Query: 62 VVSWTAIIAAFAQ 74
+VSW A+I +AQ
Sbjct: 70 LVSWNAMIDGYAQ 82
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
++ GF ++V+V +SL+ F C EN+ Y++FE+MP R+V+SW ++I+A+ E+
Sbjct: 101 LKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEI 157
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 43 KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
K ENI F MPV+NVVSW A+I+ + E D
Sbjct: 251 KSAENI-----FNHMPVKNVVSWNAMISGYVHNHEFD 282
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
N+ +S++ K G + +FE+MP+RN VSW ++I+ + +
Sbjct: 171 NIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVR 215
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G + C VR G A+ V S+L KCG D +F++MPVR+VVSWTA++ +
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERY 238
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q +S + + S+L+ K G+ ++F MP ++VS
Sbjct: 272 ACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVS 331
Query: 65 WTAIIAAFAQEWEVD 79
WTA+I+ +AQ + D
Sbjct: 332 WTAMISGYAQNGQPD 346
>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Glycine max]
Length = 722
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S +R G Q Q A++ GFV V V +++++ GE I+V +FE M R+V
Sbjct: 288 MSSCSS---LRAGCQAQSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNIFEGMEERDV 344
Query: 63 VSWTAIIAAFAQE 75
VSW +++ F QE
Sbjct: 345 VSWNIMVSMFLQE 357
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S + G Q +R GF + V +G++L++ KCG ++F+ M R+ ++W
Sbjct: 486 CSSMSAMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAMVERDTITW 545
Query: 66 TAIIAAFAQ 74
AII+A+AQ
Sbjct: 546 NAIISAYAQ 554
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAAFAQ 74
Q LAVR+G A+ +V +SL+S K ++ K+ F+++ + SWT +++A A+
Sbjct: 66 QLHALAVRTGLGAHSHVANSLLSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAK 124
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAA 71
G + ++SGF+ V +SLI+ KCG +D ++FE+ R+ VS+ A+I
Sbjct: 196 GRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAMIDG 255
Query: 72 FA 73
FA
Sbjct: 256 FA 257
>gi|361066941|gb|AEW07782.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+ +C ++ G VR+GF +V+V +SL++ +CG ++DV + +F+KMP R+
Sbjct: 11 IKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCG-SVDVARHVFDKMPERD 69
Query: 62 VVSWTAIIAAFAQ 74
+VSW A+I +AQ
Sbjct: 70 LVSWNAMIDGYAQ 82
>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
Length = 481
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 42/69 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++ G + A+R+GF A+ ++ ++L+ KCG+ + K+F+KMP R+ VSW
Sbjct: 203 CAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSW 262
Query: 66 TAIIAAFAQ 74
+++ A+
Sbjct: 263 NSMLTAYVH 271
>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 42/69 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++ G + A+R+GF A+ ++ ++L+ KCG+ + K+F+KMP R+ VSW
Sbjct: 203 CAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSW 262
Query: 66 TAIIAAFAQ 74
+++ A+
Sbjct: 263 NSMLTAYVH 271
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R 60
+ +C +R G A ++GFV V+V +SL+ G CG +K+F++MPV R
Sbjct: 123 IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGR 182
Query: 61 NVVSWTAIIAAFA 73
N+VSW +++ +FA
Sbjct: 183 NLVSWNSMLNSFA 195
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RN 61
+T+C + G + + G V N +V ++LI KCG D ++FE+M + R
Sbjct: 226 LTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRT 285
Query: 62 VVSWTAIIAAFA 73
VVSWT++I A
Sbjct: 286 VVSWTSLIVGLA 297
>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
Length = 778
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 15 GTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G + A+R G + A+V+ G++L++F CG D ++F++MP R+VVSW ++++A
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSAL 195
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + ++R +++++ ++L+ K G + +FE + VRNVVSW A+IA Q
Sbjct: 340 GKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQ 399
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S ++ G ++++G +V +G+SL+ KCG +D K+F+ MP RN
Sbjct: 101 LKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNA 160
Query: 63 VSWTAIIAAF 72
V+W A+I +
Sbjct: 161 VTWNAMICGY 170
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
N + SS+IS K G + +F+++PVRN+V+W ++I+ +AQ
Sbjct: 254 NFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQ 298
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + + G N +V + L+ KCG+ + +FE M RN
Sbjct: 328 LSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNR 387
Query: 63 VSWTAIIAAFA 73
W ++I+ FA
Sbjct: 388 ACWNSMISGFA 398
>gi|356507622|ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Glycine max]
Length = 698
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ + Q L + GF NV +GSSL+ GKCG D +MF ++P N
Sbjct: 170 LASCAASSELLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEIPQPNA 229
Query: 63 VSWTAIIAAF 72
V+W I+ +
Sbjct: 230 VTWNVIVRRY 239
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +R G Q + V+ G + V SSL++ KCG D +++F+++ R++
Sbjct: 272 LVACSSVSALREGVQIHGVVVKLGLREDNVVSSSLVNMYVKCGRLEDGFQVFDQLGFRDL 331
Query: 63 VSWTAIIAAFA 73
V WT+I++ +A
Sbjct: 332 VCWTSIVSGYA 342
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWTAIIAAFA 73
G Q R GF +++ + ++L+ GKCG F +M R+ VSW A++A++
Sbjct: 416 GKQVHGYIYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFNQMSDRRDRVSWNALLASYG 475
Query: 74 Q 74
Q
Sbjct: 476 Q 476
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R 60
+ +C +R G A ++GFV V+V +SL+ G CG +K+F++MPV R
Sbjct: 811 IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGR 870
Query: 61 NVVSWTAIIAAFA 73
N+VSW +++ +FA
Sbjct: 871 NLVSWNSMLNSFA 883
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RN 61
+T+C + G + + G V N +V ++LI KCG D ++FE+M + R
Sbjct: 914 LTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRT 973
Query: 62 VVSWTAIIAAFA 73
VVSWT++I A
Sbjct: 974 VVSWTSLIVGLA 985
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C R +R G Q + +GF A++ + ++LIS +CG + Y FEK+ +N
Sbjct: 571 ISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNN 630
Query: 63 VSWTAIIAAFAQ 74
+SW ++++ AQ
Sbjct: 631 ISWNSLVSGLAQ 642
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
NI+ G Q + +++G+ + V +SLIS K G D ++ F M RNV+SW A+I
Sbjct: 680 NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT 739
Query: 71 AFAQ 74
++Q
Sbjct: 740 GYSQ 743
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G Q +++GF NVYV S LI K G+ ++ ++P +VVS
Sbjct: 472 TCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS 531
Query: 65 WTAIIAAFAQ 74
WTA+IA + Q
Sbjct: 532 WTAMIAGYVQ 541
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q A+++G A++ + SL+ KC + +K F N+
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENI 428
Query: 63 VSWTAIIAAFAQ 74
V W ++ A+ Q
Sbjct: 429 VLWNVMLVAYGQ 440
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q CL ++ GF + YV + L++ + + I ++F M R+ VS+ ++I+ Q
Sbjct: 280 GEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339
Query: 75 E 75
+
Sbjct: 340 Q 340
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C R +R G Q + +GF A++ + ++LIS +CG + Y FEK+ +N
Sbjct: 571 ISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNN 630
Query: 63 VSWTAIIAAFAQ 74
+SW ++++ AQ
Sbjct: 631 ISWNSLVSGLAQ 642
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
NI+ G Q + +++G+ + V +SLIS K G D ++ F M RNV+SW A+I
Sbjct: 680 NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT 739
Query: 71 AFAQ 74
++Q
Sbjct: 740 GYSQ 743
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G Q +++GF NVYV S LI K G+ ++ ++P +VVS
Sbjct: 472 TCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS 531
Query: 65 WTAIIAAFAQ 74
WTA+IA + Q
Sbjct: 532 WTAMIAGYVQ 541
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q A+++G A++ + SL+ KC + +K F N+
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENI 428
Query: 63 VSWTAIIAAFAQ 74
V W ++ A+ Q
Sbjct: 429 VLWNVMLVAYGQ 440
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q CL ++ GF + YV + L++ + + I ++F M R+ VS+ ++I+ Q
Sbjct: 280 GEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339
Query: 75 E 75
+
Sbjct: 340 Q 340
>gi|410110009|gb|AFV61084.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
diamantinensis]
Length = 372
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 270 SCSDLXTLHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSLKETSVT 329
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 330 WNSIIFAYAQ 339
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ +++ C T V
Sbjct: 1 AKCRRVEDANKVFKYMXERNAVSWNALIGGYAEMGDLERCVTLFV 45
>gi|383173440|gb|AFG70124.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
gi|383173442|gb|AFG70125.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
gi|383173446|gb|AFG70127.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+ +C ++ G VR+GF +V+V +SL++ +CG ++DV + +F+KMP R+
Sbjct: 11 IKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCG-SVDVARHVFDKMPERD 69
Query: 62 VVSWTAIIAAFAQ 74
+VSW A+I +AQ
Sbjct: 70 LVSWNAMIDGYAQ 82
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S N+ G+ C ++ GF ++V V + I+ KCG K+F++MPV+ +
Sbjct: 150 IPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGL 209
Query: 63 VSWTAIIAAFAQ 74
+SW A+++ +AQ
Sbjct: 210 ISWNAMVSGYAQ 221
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G + + SGF +N ++ ++LI+ +CG +F+ MP R +
Sbjct: 251 LSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTL 310
Query: 63 VSWTAIIAAFA 73
VSWTAII +
Sbjct: 311 VSWTAIIGGYG 321
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +I G Q A G+ ++++V S+LI CG+ D K+F+++P RN+
Sbjct: 83 IKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142
Query: 63 VSWTAIIAAF 72
VSWT++I +
Sbjct: 143 VSWTSMIRGY 152
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+R G +V VG+S+I KCG F++M +NV SWTA+IA +
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYG 364
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---- 58
+ +CGS +R G + A++ GF +N V ++ GKCGE D ++FE+MP
Sbjct: 144 LKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVV 203
Query: 59 VRNVVSWTAIIAAFAQEWEVD 79
++ V WTA+I F + E +
Sbjct: 204 AKDTVCWTAMIDGFVRNEETN 224
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 38/52 (73%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VR+GF ++++V ++L+ KCGE D +++F++M +R+VV WTA+I + Q
Sbjct: 159 VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQ 210
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q C+ ++S NV V S+L+ KC D +++F K RNV++
Sbjct: 201 ACATLATLEKGKQAHCVMIKSQIKENVVVNSALMDMYFKCSSLYDGHRVFNKSLNRNVIT 260
Query: 65 WTAIIAAFAQEWEVDMCYTF 84
WTA+I+ + Q V F
Sbjct: 261 WTALISGYGQHGRVAEVLVF 280
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V + + R++R G Q C A+ G +++VG++LIS G+CG K+F++MP N
Sbjct: 113 VKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNA 172
Query: 63 VSWTAIIAA 71
++W A++ A
Sbjct: 173 IAWNAMVTA 181
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK-MPVRN 61
+++C + G +SG V V ++L+ KCG + +FE+ M RN
Sbjct: 276 LSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERN 335
Query: 62 VVSWTAIIAAFA 73
+VSWT+++AA A
Sbjct: 336 IVSWTSMMAALA 347
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 3 VTSCGSTRNIRGGTQ-YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+C +++GG + + + VR+ NV +++ K GE +MF +MP+++
Sbjct: 179 VTACCRGGDMKGGRELFDLMPVRNLMSWNV-----MLAGYTKAGELELAREMFLEMPMKD 233
Query: 62 VVSWTAIIAAFAQEWEVDMCYTF 84
VSW+ +I FA + ++F
Sbjct: 234 DVSWSTMIVGFAHNGYFEEAFSF 256
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N+R G + +R+GF + V+V +SL+ CG+ YK+FE M R++V+W ++I
Sbjct: 133 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMIN 192
Query: 71 AFA 73
FA
Sbjct: 193 GFA 195
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + ++ G N +V +SL+ KCG + ++F +M RN VSWT++I A
Sbjct: 238 GRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLA 296
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G Q C+AV++G ++ V VG++L++ KCG D + FE +N ++W+A+I
Sbjct: 225 VNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITG 284
Query: 72 FAQEWEVD 79
AQ + D
Sbjct: 285 XAQSGDSD 292
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G Q V+ GF V +GS+L + KCG D +F +MP R+V
Sbjct: 418 LKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDV 477
Query: 63 VSWTAIIAAFAQ 74
+SW A+I+ +Q
Sbjct: 478 ISWNAMISGLSQ 489
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+ + + GG +A++ +V+VGSSL++ K G + K+F+ MP RN V
Sbjct: 116 TAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSV 175
Query: 64 SWTAIIAAFAQE 75
SW +I+ +A +
Sbjct: 176 SWATMISGYASQ 187
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q ++ GF + +YV ++L+ KC +D K F+ + ++
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDI 376
Query: 63 VSWTAIIAAFAQEWE 77
V WT++I + Q E
Sbjct: 377 VLWTSMIGGYVQNGE 391
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
R+++ G ++S + VY+ +SL++ KC + +FE++ ++VVSW II
Sbjct: 20 RSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCII 78
Query: 70 AAFAQ 74
++Q
Sbjct: 79 NGYSQ 83
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S N+ G+ C ++ GF ++V V + I+ KCG K+F++MPV+ +
Sbjct: 159 IPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGL 218
Query: 63 VSWTAIIAAFAQ 74
+SW A+++ +AQ
Sbjct: 219 ISWNAMVSGYAQ 230
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G + + SGF +N ++ ++LI+ +CG +F+ MP R +
Sbjct: 260 LSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTL 319
Query: 63 VSWTAIIAAFA 73
VSWTAII +
Sbjct: 320 VSWTAIIGGYG 330
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + R++ G Q Q A+R GF ++Y+ ++L+ CG D ++F+ PV + VS
Sbjct: 112 ACAARRDVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVS 171
Query: 65 WTAIIAAFAQEWEVD 79
W I+AA+ +VD
Sbjct: 172 WNTILAAYVHAGDVD 186
>gi|414881615|tpg|DAA58746.1| TPA: hypothetical protein ZEAMMB73_747934 [Zea mays]
Length = 536
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 15 GTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q AV+ GF +NV+V +SLIS CG +D+ ++ E+M VR+VVSW + I
Sbjct: 314 GRQVHARAVKDGFGRSNVFVSNSLISMYSSCGATLDLEQVLEEMAVRDVVSWNSAIQGLG 373
Query: 74 Q 74
Q
Sbjct: 374 Q 374
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 38 ISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTF 84
++ G+ G+ +MFE MPV++ VSW A +AA D +F
Sbjct: 26 VTEAGRGGQAERALEMFEAMPVKSQVSWNAALAALVDAGRTDWALSF 72
>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 791
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG T+N+ G Q LA + G+ +V V + LIS KC D +F+ M RNV
Sbjct: 297 ISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNV 356
Query: 63 VSWTAIIA 70
VSWT +I+
Sbjct: 357 VSWTTLIS 364
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L V+ GF V++G++L++ + G + ++F +M +R++VSW A+++ +AQ
Sbjct: 206 GLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQ 265
Query: 75 EWEVDMCY 82
E E CY
Sbjct: 266 EGE---CY 270
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 3 VTSCGSTRNIRG----GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
VT S + RG G Q V +GFV+ V V +SL+ K G +FE +
Sbjct: 87 VTLALSFKACRGEFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLS 146
Query: 59 VRNVVSWTAIIAAFAQ 74
++VSW I++ F +
Sbjct: 147 CPDIVSWNTILSGFEK 162
>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
Length = 690
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++RGG Q ++ GF ++ + ++LI KCG+ ++F+ MP RNVVSWTA++
Sbjct: 19 SLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMV 78
Query: 71 AFAQEWEVDMC 81
F E C
Sbjct: 79 GFLHHGEAREC 89
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+ G Q C ++ +V V +SL+ KCG + + F +MP RNVVSWTA+I
Sbjct: 324 VEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMI 381
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG R G Q + VR+GF + V +SL+ K D ++F+ +P RN+
Sbjct: 112 LKACGG--GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNL 169
Query: 63 VSWTAIIAAFAQ 74
+W ++I+ +A
Sbjct: 170 ATWNSMISGYAH 181
>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
Length = 690
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++RGG Q ++ GF ++ + ++LI KCG+ ++F+ MP RNVVSWTA++
Sbjct: 19 SLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMV 78
Query: 71 AFAQEWEVDMC 81
F E C
Sbjct: 79 GFLHHGEAREC 89
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+ G Q C ++ +V V +SL+ KCG + + F +MP RNVVSWTA+I
Sbjct: 324 VEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMI 381
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG R G Q + VR+GF + V +SL+ K D ++F+ +P RN+
Sbjct: 112 LKACGG--GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNL 169
Query: 63 VSWTAIIAAFAQ 74
+W ++I+ +A
Sbjct: 170 ATWNSMISGYAH 181
>gi|302772651|ref|XP_002969743.1| hypothetical protein SELMODRAFT_92565 [Selaginella moellendorffii]
gi|300162254|gb|EFJ28867.1| hypothetical protein SELMODRAFT_92565 [Selaginella moellendorffii]
Length = 307
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAFAQEWEVDM 80
G +NV VG+++I+ GKCG D +FE+MP + NV+SWT++++A AQ +++M
Sbjct: 92 GLESNVIVGTAVITMYGKCGSLTDSRLVFERMPQKNLNVISWTSLVSAHAQAGDLEM 148
>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G Q CL ++ F + +V S+LI KCGE D K+F+ M V+++
Sbjct: 139 LKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDL 198
Query: 63 VSWTAIIAAFAQE 75
V+ A+++ +AQ+
Sbjct: 199 VAMNAVVSGYAQQ 211
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
+R+++ G + L +G+V + S+LI+ CG+ K+F+K+P N+ W A+
Sbjct: 42 SRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHRWIAL 101
Query: 69 IAAFAQ 74
IA A+
Sbjct: 102 IATCAR 107
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + +R G + A+ G ++YV S+L+ KCG + +F KMP +N V+
Sbjct: 312 ACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVT 371
Query: 65 WTAIIAAFA 73
++I +A
Sbjct: 372 MNSMIFGYA 380
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G V++G V+V SSL GKCG D K+F+++P RNVV+
Sbjct: 182 ACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA 241
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 242 WNALMVGYVQ 251
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T+N++ G + QC +R F +++ + S+++ KCG +D K+F+ +++
Sbjct: 382 MSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDL 441
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+A+
Sbjct: 442 ILWNTLLAAYAE 453
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRNV 62
C R++ G Q +++G + N Y+ + L+ F KC + +D+ + +F K+ VRNV
Sbjct: 80 CVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKC-DALDIAEVLFTKLRVRNV 138
Query: 63 VSWTAIIA 70
SW AII
Sbjct: 139 FSWAAIIG 146
>gi|302780387|ref|XP_002971968.1| hypothetical protein SELMODRAFT_96515 [Selaginella moellendorffii]
gi|300160267|gb|EFJ26885.1| hypothetical protein SELMODRAFT_96515 [Selaginella moellendorffii]
Length = 358
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S+R+++ A SG +A+V + ++L++ GKCG D +F++MP R+ S
Sbjct: 157 ACSSSRDLQEAGALHERAAASGMLAHVPLANALVAMYGKCGSLADARAVFKRMPRRDATS 216
Query: 65 WTAIIAAFAQ 74
WT++I A A+
Sbjct: 217 WTSMIVACAR 226
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 23 VRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+RSG + +V + ++L+S GK GE +F M R +SW A++AA+
Sbjct: 76 IRSGIYKDDVVLATALVSMLGKFGEMEQARTVFSGMAKRTAISWNAMLAAY 126
>gi|255576918|ref|XP_002529344.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531164|gb|EEF33011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ IR G V+ G V+V SSLI GKCG +D K+F+ M +NV
Sbjct: 30 LKACGALYWIRFGKGVHGYVVKMGLDGCVFVSSSLIDMYGKCGILMDARKVFDAMRQKNV 89
Query: 63 VSWTAIIAAFAQ 74
V+W ++I + Q
Sbjct: 90 VTWNSMIMGYVQ 101
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +T+NI+ G + C +R+ ++V V +++++ KCG D ++F +++
Sbjct: 232 LSACANTKNIQLGKEAHCYCIRNNLESDVDVANAIVNMYAKCGSIHDAKEVFNSTMNKDL 291
Query: 63 VSWTAIIAAFAQ 74
W ++ A+AQ
Sbjct: 292 TLWNMLLTAYAQ 303
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +AV+ G+ + +GSS+++F K G D +F M ++VV+W +I+++ Q
Sbjct: 143 GKQGHAIAVKGGYELDNILGSSILNFYSKVGLIEDAELVFSNMAEKDVVTWNLLISSYLQ 202
Query: 75 ----EWEVDMCY 82
E ++MC+
Sbjct: 203 CELVEKALNMCH 214
>gi|359475755|ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09220, mitochondrial-like [Vitis vinifera]
Length = 509
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ +GG Q L +++GF +VY+ + L++ CG ++ ++ ++MPVRN V+
Sbjct: 141 ACAYLQHRKGGLQLHALTLKAGFEFHVYLHTVLLNVYAVCGALLEAKQVLDEMPVRNSVT 200
Query: 65 WTAIIAAFAQEWEVDM 80
W +I A+ E+ +
Sbjct: 201 WNVLITGLAKWGELHL 216
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 24 RSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWTAIIAAFA 73
+SG A ++ + +SL+ KCG + ++F ++ RN+VSWT++I+AFA
Sbjct: 293 KSGLNASDIRIRNSLLDTYAKCGCMESIXRVFGEIAAKSRNLVSWTSVISAFA 345
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE--KMPVR 60
+++C + ++ G LA+++G N YV + LIS KCG D +F +MP R
Sbjct: 300 LSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKR 359
Query: 61 NVVSWTAIIAAFAQ 74
+VVSWTAII+A+ Q
Sbjct: 360 DVVSWTAIISAYVQ 373
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ I+ G Q+ L + GF ++VG+SLI+ KCG D + +FE+MP ++
Sbjct: 403 LSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYE-DGFCVFEEMPEHDL 461
Query: 63 VSWTAIIAAFAQ 74
++W A++ AQ
Sbjct: 462 ITWNAVLVGCAQ 473
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVVSWTAIIAAFAQEWE 77
N Y +++I+ +CG D +++E++P + N SW A+IA F Q E
Sbjct: 225 NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEE 273
>gi|242089513|ref|XP_002440589.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
gi|241945874|gb|EES19019.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
Length = 613
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N YV + LI+ KCGE + ++F+ P +N V+W +IIAAFA+
Sbjct: 349 GKQIHALVIKKCFGGNTYVCNGLINMYSKCGELQESIEVFDGTPSKNTVTWNSIIAAFAR 408
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LAV G A V VG++LI+ +C ++F+ M RNVV+WTA+++ A+
Sbjct: 154 LAVSCGLDAEVSVGNALITAYFECSSPGSAERVFDAMADRNVVTWTAMVSGMAR 207
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q L V++GF +++V S L+ KCG D ++F + V
Sbjct: 238 ACAGSLAASEGQQIHGLVVKAGFETDLHVESELMDMYSKCGLMEDALRVFRSCQDPDEVF 297
Query: 65 WTAIIAAFAQ 74
T I+ FAQ
Sbjct: 298 LTVILVGFAQ 307
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 6 CGSTRNIRGGTQYQCLAV-----------RSGFVANVY-VGSSLISFCGKCGENIDVYKM 53
CG ++R GT + RS + +V V +SL++ +CG D +
Sbjct: 21 CGRAGDLRLGTALHAVVAKNPAHFRLCPHRSASLHHVLAVWNSLVAMYARCGRRGDAARA 80
Query: 54 FEKMPVRNVVSW 65
F++MP+R+ VSW
Sbjct: 81 FDEMPLRDSVSW 92
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN- 61
+ +CG +I G + L ++ G+ + V+V +SL+S KC + + K+F++M RN
Sbjct: 17 LKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERND 76
Query: 62 VVSWTAIIAAFA 73
VVSW +II+A++
Sbjct: 77 VVSWNSIISAYS 88
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + A+++ +N+ +G++LI KC +F+KM ++++SWT +IAA+AQ
Sbjct: 232 GKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQ 291
>gi|410110027|gb|AFV61093.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
micromera]
Length = 354
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 249 SCSDLAXLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 308
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 309 WNSIIFAYAQ 318
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 4 TSCGSTRNIRG-GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
T+C +RG G + V+ G+ ++++VG+SL++ +D ++F++MP R+V
Sbjct: 164 TACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDV 223
Query: 63 VSWTAIIAAFAQEWEV 78
++WT+++ +A E+
Sbjct: 224 ITWTSVVKGYAMRGEL 239
>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 754
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C I G Q +++GF+++V V +SLIS KCG K F +M R +
Sbjct: 385 LSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTM 444
Query: 63 VSWTAIIAAFAQ 74
++WT++I F+Q
Sbjct: 445 IAWTSMITGFSQ 456
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C R+ G +++G N +V S L++ KCG D ++FE MP RNV
Sbjct: 71 LQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNV 130
Query: 63 VSWTAIIAAFAQ 74
V+WT ++ F Q
Sbjct: 131 VAWTTLMVGFVQ 142
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S ++++ G Q+ ++ + VGS+L S KCG D K F ++ +NV+S
Sbjct: 174 ACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVIS 233
Query: 65 WTAIIAA 71
WT+ ++A
Sbjct: 234 WTSAVSA 240
>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
Length = 2076
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ V++ +VG+SL+ KCG D Y++F+KM VRN+V W A++ AQ
Sbjct: 586 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDXYRLFKKMNVRNIVLWNAMLVGIAQ 645
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 37/67 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G Q +++GF +++YV S ++ KCG+ ++ +F + + V+
Sbjct: 475 ACGCLVLLDZGKQIHAHVIKAGFXSDLYVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA 534
Query: 65 WTAIIAA 71
WT++I+
Sbjct: 535 WTSMISG 541
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
ST N+ G V SG + ++ ++L++ KCG ++F+ P R++V+W A
Sbjct: 96 STHNLLLGKCTHARIVVSGTAGDHFLTNNLLTLYSKCGSLSFACQVFDTTPERDLVTWNA 155
Query: 68 IIAAFA 73
I+ A+A
Sbjct: 156 ILGAYA 161
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A++ G V +V+V +L++ KCG D +F+ M R+VV W ++ + Q
Sbjct: 216 AIKIGLVWDVFVFGTLMNIYSKCGRMXDARLLFDGMRERDVVLWNMMLKGYVQ 268
>gi|302802983|ref|XP_002983245.1| hypothetical protein SELMODRAFT_118071 [Selaginella moellendorffii]
gi|300148930|gb|EFJ15587.1| hypothetical protein SELMODRAFT_118071 [Selaginella moellendorffii]
Length = 724
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG R++R G + +G V N V ++LI+ GKC + +F +P +V
Sbjct: 146 IDSCGILRSLRDGKLLHEQTLEAGLVHNTAVANTLITMYGKCQRLDSAWSVFADIPNPDV 205
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT+I AFA+ D
Sbjct: 206 VSWTSIATAFARNGYFD 222
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C TR++ G + ++G+ A+ +V +SLI G C + +F RN+
Sbjct: 14 IQQCAKTRSLLQGKELHREVHKNGYGAHTFVANSLIQMYGSCQCLQEARSIFHSTRNRNI 73
Query: 63 VSWTAIIAAFAQEWEVD 79
SWT + A A+ ++D
Sbjct: 74 YSWTIFLVASAENGDLD 90
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +I G + +R GF ++V VG++LI+ KCG+ + +F+KMP R+
Sbjct: 205 LKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR 264
Query: 63 VSWTAIIAAF 72
+SW A+I+ +
Sbjct: 265 ISWNAMISGY 274
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G + +A+++G V++V V +SLI KC + ++F + +NV
Sbjct: 407 LSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466
Query: 63 VSWTAII 69
VSWT++I
Sbjct: 467 VSWTSLI 473
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C N R G V+S F ++ + +SLI G + +F +M ++VV
Sbjct: 307 SACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVV 366
Query: 64 SWTAIIAAF 72
SWTA+IA+
Sbjct: 367 SWTAMIASL 375
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +I G + +R GF ++V VG++LI+ KCG+ + +F+KMP R+
Sbjct: 205 LKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR 264
Query: 63 VSWTAIIAAF 72
+SW A+I+ +
Sbjct: 265 ISWNAMISGY 274
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G + +A+++G V++V V +SLI KC + ++F + +NV
Sbjct: 407 LSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466
Query: 63 VSWTAII 69
VSWT++I
Sbjct: 467 VSWTSLI 473
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C N R G V+S F ++ + +SLI G + +F +M ++VV
Sbjct: 307 SACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVV 366
Query: 64 SWTAIIAAF 72
SWTA+IA+
Sbjct: 367 SWTAMIASL 375
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+++C + + +A +SGF +NV VGS+LI KCG D YK+FE+M R
Sbjct: 279 ISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEER 338
Query: 61 NVVSWTAIIAAFA 73
NV S++++I FA
Sbjct: 339 NVYSYSSMIVGFA 351
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C + ++ G Q + GF +++YVG++LI KCG +++F++M R+
Sbjct: 146 LKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRD 205
Query: 62 VVSWTAIIAAFAQ 74
V+SWT++I A+A+
Sbjct: 206 VISWTSLIVAYAK 218
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +I G Q A G+ ++++V S+LI CG+ D K+F+++P RN+
Sbjct: 83 IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142
Query: 63 VSWTAIIAAF 72
VSWT++I +
Sbjct: 143 VSWTSMIRGY 152
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+R G +V VG+S+I KCG K F++M +NV SWTA+IA +
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYG 364
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 48/83 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +I+ GT ++ GF A+ +V ++L+ KC ++F++MP R+V
Sbjct: 53 LKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSV 112
Query: 63 VSWTAIIAAFAQEWEVDMCYTFI 85
VSW A+++A+++ +D + +
Sbjct: 113 VSWNAMVSAYSRRSSMDQALSLL 135
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C ++ G + + +G ++ V +SLI KCG + ++FE++ +++
Sbjct: 360 VSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDL 419
Query: 63 VSWTAIIAAFA 73
WT++I ++A
Sbjct: 420 TVWTSMINSYA 430
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C I G Q +++GF+++V V +SLIS KCG K F +M R +
Sbjct: 388 LSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTM 447
Query: 63 VSWTAIIAAFAQ 74
++WT++I F+Q
Sbjct: 448 IAWTSMITGFSQ 459
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S ++++ G Q+ ++ + VGS+L S KCG D K F ++ +NV+S
Sbjct: 177 ACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVIS 236
Query: 65 WTAIIAAFA 73
WT+ ++A A
Sbjct: 237 WTSAVSACA 245
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+++G N +V S L++ KCG D ++F+ M RNVV+WT ++ F Q
Sbjct: 94 MKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQ 145
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+SC ++ G Q ++ G+V NV+VGSSL+ KCG+ F+ MP +N+V
Sbjct: 527 SSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIV 586
Query: 64 SWTAIIAAFAQ 74
+W +I +A
Sbjct: 587 TWNEMIHGYAH 597
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 45/75 (60%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++CG +++ G + L ++ GF +N+YV ++L+ KCG N D +++FE + N V
Sbjct: 146 SACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEV 205
Query: 64 SWTAIIAAFAQEWEV 78
++T ++ +Q +V
Sbjct: 206 TFTTMMGGLSQTNQV 220
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q ++ + GF +VYV SSLI+ KCG+ +F K+ +V
Sbjct: 425 LSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDV 484
Query: 63 VSWTAIIAAFA 73
V W ++IA F+
Sbjct: 485 VCWNSMIAGFS 495
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q LAV+ GF ++++ +SL+ K G+ +FE + +VVSW +I+ +
Sbjct: 270 GKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYG 328
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + +++ R ++ ++ + LI KC + + +F+K+P +N+
Sbjct: 12 LQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNI 71
Query: 63 VSWTAIIAAFAQ 74
S+ AI++AF +
Sbjct: 72 FSYNAILSAFCK 83
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 38/52 (73%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VR+GF ++++V ++L+ KCGE D +++F++M +R+VV WTA+I + Q
Sbjct: 159 VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQ 210
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
AV +GF+ +V VG+S++ KCG +F++M RN +SW ++++ + Q
Sbjct: 259 AVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQ 311
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G Q +AV+ GF+ ++YV +SL+ F CG+ ++F++M VR+V
Sbjct: 112 LKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDV 171
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ + +
Sbjct: 172 VSWTGLISGYVR 183
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G L + F + VG++L+ KC + K+F+++P R++
Sbjct: 210 LVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDI 269
Query: 63 VSWTAIIAAFAQ 74
VSWT+II+ Q
Sbjct: 270 VSWTSIISGLVQ 281
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q R G ++++G++L+ KCG +F +P RN+
Sbjct: 311 LSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNI 370
Query: 63 VSWTAIIAAFA 73
+W A++ A
Sbjct: 371 FTWNALLGGLA 381
>gi|7406390|emb|CAB85500.1| putative protein [Arabidopsis thaliana]
Length = 837
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A+++G+ +++ +G+SLIS KC ++ D K+F M +V+SW
Sbjct: 531 CGTLGFREMGYQIHCYALKAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISW 590
Query: 66 TAIIAAF 72
++I+ +
Sbjct: 591 NSLISCY 597
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK-CGENID-VYKMFEKMPVR 60
+T+C G Q L V+SGF+ +V+V +SL+S K G + D V K+F+++P R
Sbjct: 188 LTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQR 247
Query: 61 NVVSWTAIIAAFAQE 75
+V SW ++++ +E
Sbjct: 248 DVASWNTVVSSLVKE 262
Score = 35.0 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + + G + A+R G + + V ++LI F K + V ++E M ++
Sbjct: 292 LSSCTDSSVLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDA 351
Query: 63 VSWTAIIAAFAQEWEVD 79
V++T +I A+ VD
Sbjct: 352 VTFTEMITAYMSFGMVD 368
>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Glycine max]
Length = 586
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C R + G Q + + GF VG+S+I KCG + ++F +PVRNV
Sbjct: 11 LNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNV 70
Query: 63 VSWTAIIAAFAQE 75
+SW A+IA + E
Sbjct: 71 ISWNAMIAGYTNE 83
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 15 GTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G Q +R GF +A V +L+ KC + K+F+++ ++V+SW+ +I +
Sbjct: 124 GMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGY 183
Query: 73 AQE 75
AQE
Sbjct: 184 AQE 186
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
V +S++ KCG ++ +F +M RNVVSWT +I + +
Sbjct: 246 VANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGK 287
>gi|302756227|ref|XP_002961537.1| hypothetical protein SELMODRAFT_626 [Selaginella moellendorffii]
gi|300170196|gb|EFJ36797.1| hypothetical protein SELMODRAFT_626 [Selaginella moellendorffii]
Length = 675
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S R I G A SG + V ++L+S GKC +MF++M RN+
Sbjct: 120 IDACSSLRRIDLGIAVHVEARESGTEMHYAVATALVSMYGKCRRLERSKEMFDRMEERNM 179
Query: 63 VSWTAIIAAFAQEWEVD 79
V+WTA+I A+AQ ++D
Sbjct: 180 VTWTAMITAYAQNAQLD 196
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S +I G V S F +V+VG+SL++ G+C + F + +N+++
Sbjct: 339 ACSSLASIEFGRVVHACIVDSCFAGDVHVGTSLVTMFGRCEHAQEADAAFHAIVAKNILA 398
Query: 65 WTAIIAAFAQEWEVD 79
WTAI++A A +D
Sbjct: 399 WTAILSANALSGHLD 413
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ ++ G + + N+ V + LI+ GKCG + +F+ P R+++S
Sbjct: 224 ACGALGDLAVGRKIHRRIATARMEENLIVANGLIAMYGKCGGVEEARAVFDSTPQRSLLS 283
Query: 65 WTAIIAAFAQEWEVDMC 81
W +IAA+AQ C
Sbjct: 284 WNLMIAAYAQNGHPRHC 300
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
R F+ N+ L+ G+ G D ++F+ +P RN SW ++AAFAQ
Sbjct: 34 RDSFLLNL-----LVQMFGRFGCVADASRVFDSIPARNCYSWNIMVAAFAQ 79
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVVSWTAIIAAFAQ 74
A+ SG+ ++ V L++ KCG ++F+ + R VV+W+ +I+A+AQ
Sbjct: 488 AIESGYSSDTQVAVGLLNLFEKCGSLAIAERVFDDLGERKTVVAWSIMISAYAQ 541
>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
Length = 604
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++N+ G + V +G +++ + ++ GKCG D+ + F M RN+VS
Sbjct: 42 ACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGMKRRNIVS 101
Query: 65 WTAIIAAFAQ 74
W A+I+A+AQ
Sbjct: 102 WNAVISAYAQ 111
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C I C + +G +N +G++L++ GKCG + K+F+K+ R+V
Sbjct: 242 VHACVLVARITDARTIHCRIIEAGLESNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDV 301
Query: 63 VSWTAIIAAFAQ 74
V W+AI+ A+A+
Sbjct: 302 VVWSAILEAYAR 313
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA+ GF ++ V ++L++ K G ++F+++ +++VVSW+ +IAA+AQ
Sbjct: 159 LALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQ 212
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S R+I G Q + G +++V +SLI+ GKCG+ +FE M R+V S
Sbjct: 94 ACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVAS 153
Query: 65 WTAIIAAFA 73
W+AIIAA A
Sbjct: 154 WSAIIAAHA 162
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G + VRSGF + +V S+L+ GKCG ++FE++ +NV
Sbjct: 406 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 465
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSW ++IA ++ + + C
Sbjct: 466 VSWNSMIAGYSLKGDSKSC 484
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G ++SGF +V V SS + KC D K+F++MP R+V
Sbjct: 305 LKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDV 364
Query: 63 VSWTAIIAAFAQE 75
SW +I+ + Q+
Sbjct: 365 ASWNNVISCYYQD 377
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + N++ G +R+ A+++V SSLI KCG +F+ MP NV
Sbjct: 507 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 566
Query: 63 VSWTAIIAAFAQ 74
VSW +I+ + +
Sbjct: 567 VSWNVMISGYVK 578
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + + S N V +L+ KCG + +F ++P R+ VS
Sbjct: 610 ACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVS 669
Query: 65 WTAIIAAFA 73
WT++IAA+
Sbjct: 670 WTSMIAAYG 678
>gi|225216963|gb|ACN85255.1| EMB2261 putative [Oryza officinalis]
Length = 622
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +++ G + C +R G +V V S+L+ KCG Y +FE VRN ++
Sbjct: 349 ACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTIT 408
Query: 65 WTAIIAAFAQ 74
W A+I FAQ
Sbjct: 409 WNAMIGGFAQ 418
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ G+ + G Q V G NV V SS + KCG ++ K+F++M VRN
Sbjct: 248 MTALGNLKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNE 307
Query: 63 VSWTAIIAAFAQEWEVD 79
VS A++ + Q E +
Sbjct: 308 VSRCALLGGYCQNGEYE 324
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE---WE 77
AVR GF ++YVGSS+++F K G D K+F+ MP ++VV W +II + Q+ WE
Sbjct: 171 AVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWE 229
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C T ++ G +R +++ + ++++ KCG +F +M +NV
Sbjct: 354 IRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNV 413
Query: 63 VSWTAIIAAFAQ 74
++WTA++ +Q
Sbjct: 414 ITWTAMLVGLSQ 425
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + L GF ++VY+G++L+ K G+ + ++F+KMPV+++
Sbjct: 107 LKACAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDI 166
Query: 63 VSWTAIIAAFAQ 74
V+W +++ AQ
Sbjct: 167 VTWNTMVSGLAQ 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
N+ G V+ G ++++ V +SLI+ KCGE ++F K+ R+VVSW+A+IA
Sbjct: 315 NLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIA 374
Query: 71 AFAQEWEVD 79
+F Q + D
Sbjct: 375 SFEQAGQHD 383
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R G C A+++ + + +++IS KCG K FE++P+++ +++
Sbjct: 411 CAGVAASRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAF 470
Query: 66 TAIIAAFAQ 74
A+ + Q
Sbjct: 471 NALAQGYTQ 479
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
++ GF ++ VG+SL+ KCG K F ++ +N+VSW +++A+A
Sbjct: 631 IQFGFCSHTPVGNSLVDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYA 681
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G Q +AV+ GF+ ++YV +SL+ F CG+ ++F++M VR+V
Sbjct: 112 LKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDV 171
Query: 63 VSWTAIIAAFAQ 74
VSWT +I+ + +
Sbjct: 172 VSWTGLISGYVR 183
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G L + F + VG++L+ KC + K+F+++P R++
Sbjct: 210 LVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDI 269
Query: 63 VSWTAIIAAFAQ 74
VSWT+II+ Q
Sbjct: 270 VSWTSIISGLVQ 281
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G Q R G ++++G++L+ KCG +F +P RN+
Sbjct: 311 LSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNI 370
Query: 63 VSWTAIIAAFA 73
+W A++ A
Sbjct: 371 FTWNALLGGLA 381
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
++ G L + GF ++VYV + LI F G CG K+FE+MP R++VSW+++IA
Sbjct: 100 LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIAC 159
Query: 72 FAQ 74
FA+
Sbjct: 160 FAK 162
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
R+G V +G++L+ +CG + ++F++M RNV++WTA+I A
Sbjct: 214 RNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLA 263
>gi|224111588|ref|XP_002332913.1| predicted protein [Populus trichocarpa]
gi|222873730|gb|EEF10861.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q V+ G +++V+VG+SL+ G G D K+F++M +NVVSWTA++ A+
Sbjct: 140 GVQVHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVD 199
Query: 75 EWEVDM 80
E M
Sbjct: 200 YGEPSM 205
>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
Length = 867
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEKMPV 59
+PV C + N+ GG ++SGF + + G++L+S KCG D Y +F+ +
Sbjct: 147 LPV--CARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIH 204
Query: 60 RNVVSWTAIIAAFAQ 74
++VVSW A+IA A+
Sbjct: 205 KDVVSWNAMIAGLAE 219
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C N++ G Q +R F+ + G++L+SF KCG + Y F + ++++
Sbjct: 357 ACAQLDNLQAGKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLI 416
Query: 64 SWTAIIAAFAQE 75
SW +I+ AF ++
Sbjct: 417 SWNSILDAFGEK 428
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA--QEW 76
A+V V ++L+SF K G + +F M R++VSW IIA +A EW
Sbjct: 279 ADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYALNGEW 328
>gi|326531546|dbj|BAJ97777.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 296
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + N+ G Q C +R GF + + ++LI KCG +F++M RNV
Sbjct: 52 LTACSAAANLAYGLQVHCKVLRCGFDSETVLCNALIDMYAKCGRTTAARVVFDRMTRRNV 111
Query: 63 VSWTAIIAAFAQ 74
VSW+++I +++
Sbjct: 112 VSWSSMIDGYSR 123
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G V+SG V+V SSL GKCG D K+F+++P RN V+
Sbjct: 182 ACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA 241
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 242 WNALMVGYVQ 251
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T N++ G + QC +R F +++ + S+++ KCG +D K+F+ +++
Sbjct: 382 MSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDL 441
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+A+
Sbjct: 442 ILWNTLLAAYAE 453
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC +F K+ VRNV
Sbjct: 80 CVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVF 139
Query: 64 SWTAIIA 70
SW AII
Sbjct: 140 SWAAIIG 146
>gi|326506094|dbj|BAJ91286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 625
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC ++ G Q L V+ G + S + KC + D +MFE MP R++
Sbjct: 333 VSSCADVNDLGSGRQCHALVVKHGLELVPIIASCFVDMYSKCAKMDDAIRMFEIMPQRDI 392
Query: 63 VSWTAIIAAFAQ 74
+SW A+I AQ
Sbjct: 393 ISWNAMICGLAQ 404
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
Q + ++SG++ ++++ +SL+ G+CG K+F+ M ++VVSWTA+I+ A
Sbjct: 246 QVHSIILKSGYLKDLFLCNSLLDLYGRCGYIDLAKKLFDAMLEKDVVSWTAVISGLA 302
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q AV++G A+ VG+ I + G D K+F+ MP+R+++SW ++ +
Sbjct: 145 QVHARAVKAGVFADACVGTGFIKLYAELGLMEDAGKVFDCMPLRDLMSWNVLLDCGVRSG 204
Query: 77 EVDMC 81
E C
Sbjct: 205 EAGSC 209
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S+ + G + + SG+ + VG++LIS K G D ++F+KMP R++VSW
Sbjct: 643 CTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSW 702
Query: 66 TAIIAAFAQ 74
IIA +AQ
Sbjct: 703 NKIIAGYAQ 711
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ + G G ++V +G++LIS +CG+ ++F MP R++
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396
Query: 63 VSWTAIIAAFAQ 74
+SW AIIA +A+
Sbjct: 397 ISWNAIIAGYAR 408
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G + V+ +V VG++LIS KCG + ++F+ + +NV
Sbjct: 741 LNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNV 800
Query: 63 VSWTAIIAAFAQ 74
V+W A+I A+AQ
Sbjct: 801 VTWNAMINAYAQ 812
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S + G + +++G+ + V +SL+S GKCG+ ++F + R+V
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VS+ ++ +AQ+ V C
Sbjct: 195 VSYNTMLGLYAQKAYVKEC 213
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G +RSG +N ++ ++L++ +CG ++ +FE R+V
Sbjct: 438 LSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV 497
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
+SW ++IA AQ + Y
Sbjct: 498 ISWNSMIAGHAQHGSYETAY 517
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 34/46 (73%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
++++ + LI+ KC +D +++F++MP R+V+SW ++I+ +AQ+
Sbjct: 61 DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQ 106
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + L V G +++ VG++L++ C +CG+ + F+ R+VV + A+IAA AQ
Sbjct: 248 GKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQ 307
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C + + G Q SG +V +G++LI+ +CG D +F + R+V
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV 598
Query: 63 VSWTAIIAAFAQEWEVDM 80
+SWTA+I A + E DM
Sbjct: 599 MSWTAMIGGCADQGE-DM 615
>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Brachypodium distachyon]
Length = 707
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ ++ I GG Q ++ GF ++ +G++LI KCGE ++F MP RNVVS
Sbjct: 13 ASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVS 72
Query: 65 WTAIIAAFAQEWEVDMC 81
WTA++ F + + C
Sbjct: 73 WTALMVGFLRHGDAREC 89
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G Q C V++ +V V +SLI KCG + + F ++P RNVVSWTA+I
Sbjct: 332 VEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMING 391
Query: 72 FAQ 74
+
Sbjct: 392 LGK 394
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG ++ G VR+GF + V +SL+ K G D ++F+ RN+
Sbjct: 113 LKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNL 172
Query: 63 VSWTAIIAAFAQ 74
V+W A+I+ +A
Sbjct: 173 VTWNAMISGYAH 184
Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDV-YKMFEKMPV 59
+ +CGS R G Q V G +N + +L+ KC + + ++F ++
Sbjct: 219 LKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQ 278
Query: 60 RNVVSWTAIIAAFAQEWEV 78
+N + WT +I AQE +V
Sbjct: 279 KNAIQWTTVIVGHAQEGQV 297
>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 760
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 MPVTSCGSTRNIRG---GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57
+P C S I G G Q LA+R GFV +++ +SL+ K + +F +M
Sbjct: 237 VPREGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEM 296
Query: 58 PVRNVVSWTAIIAAFAQEWEVDMCYTFI 85
P NVVSW +IA F QE+ D ++
Sbjct: 297 PEVNVVSWNIMIAGFGQEYRSDKSIEYL 324
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRN 61
+++C ++ G + +AV++G N++VG++L+S KCG +D ++FE + N
Sbjct: 131 LSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPN 190
Query: 62 VVSWTAIIAAFAQEWEV 78
VS+T +I+ A+E +V
Sbjct: 191 EVSFTTVISGLARENKV 207
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q+ V+SG+V++ +V +++ KCGE + F+ + +N V
Sbjct: 514 SCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVI 573
Query: 65 WTAIIAAFAQ 74
W +I +A
Sbjct: 574 WNEMIHGYAH 583
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S R++ G + + + ++ + + ++S GKCG + MF+ MP++NV
Sbjct: 105 INACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNV 164
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSWT++I+ +++ E D T V
Sbjct: 165 VSWTSMISGYSRYGEEDNAITLYV 188
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S G + G+Q C ++SG ++ V ++LI+ KCG KMF+ + ++
Sbjct: 511 LVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDI 570
Query: 63 VSWTAIIAAFAQ 74
+SW+++I +AQ
Sbjct: 571 ISWSSLIVGYAQ 582
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SC + + Q ++S F A++ ++LIS K + D +F ++ ++++
Sbjct: 206 VKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDL 265
Query: 63 VSWTAIIAAFAQ 74
+SW ++IA F+Q
Sbjct: 266 ISWGSMIAGFSQ 277
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C G Q L ++ G ++++ G SL KCG +F + ++V
Sbjct: 309 SACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLV 368
Query: 64 SWTAIIAAFA 73
+W AIIA FA
Sbjct: 369 AWNAIIAGFA 378
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
+C + G Q V+ GF ++ V +SL+S KC D ++FE + + ++V
Sbjct: 411 ACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIV 470
Query: 64 SWTAIIAAFAQE 75
SW ++ A Q+
Sbjct: 471 SWNTLLTACLQQ 482
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + ++ G Q+ +A++ G +VYV ++LI F G C K+F++M R +
Sbjct: 138 LKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTL 197
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW A+I A + + D
Sbjct: 198 VSWNAVITACVENFCFD 214
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ G+ +VYVGS+L+ +CG+ +F+K+ +N VSW A+I+ FA+
Sbjct: 171 GRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFAR 230
Query: 75 E 75
+
Sbjct: 231 K 231
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++N+ + S F + ++ +SLI KC +D +F++M +++
Sbjct: 58 ITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDM 117
Query: 63 VSWTAIIAAFAQ 74
VSWT++IA +AQ
Sbjct: 118 VSWTSLIAGYAQ 129
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+VG++L+ K G ID K+F+++ +++V+W +++ AFAQ
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQ 331
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G + Q ++ G NVYV +++I F G C D +MF++M R V
Sbjct: 767 LKACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTV 826
Query: 63 VSWTAIIAAFA-QEWEVDMCYTFI 85
VSW A+++A EW D F+
Sbjct: 827 VSWNAVLSACVDNEWLNDSFGLFV 850
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C N+ G + G V N +G++L+ KCG + +F +M RNV
Sbjct: 868 LSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNV 927
Query: 63 VSWTAIIAAFAQ 74
+W+A+I AQ
Sbjct: 928 WTWSAMILGLAQ 939
>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G A++ GF ++V+VG +L+ F GKCG+ ++F + R++VSW A+I+ FAQ
Sbjct: 368 GMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQ 427
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
+ C +R F N V +SLIS KCG+ +FEK+PVRN V+W +I+ F
Sbjct: 471 EVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHG 530
Query: 77 EVD-MCYTF 84
D M TF
Sbjct: 531 RTDEMFATF 539
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + G ++ G Q ++ GF+ +++V +SL+ KCG + MFE+M R+
Sbjct: 46 IKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDS 105
Query: 63 VSWTAIIAAFAQ 74
VSW +I+ F Q
Sbjct: 106 VSWNTMISGFCQ 117
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S R++ G + + + ++ + + ++S GKCG + MF+ MP++NV
Sbjct: 105 INACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNV 164
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSWT++I+ +++ E D T V
Sbjct: 165 VSWTSMISGYSRYGEEDNAITLYV 188
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S G + G+Q C ++SG ++ V ++LI+ KCG KMF+ + ++
Sbjct: 511 LVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDI 570
Query: 63 VSWTAIIAAFAQ 74
+SW+++I +AQ
Sbjct: 571 ISWSSLIVGYAQ 582
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SC + + Q ++S F A++ ++LIS K + D +F ++ ++++
Sbjct: 206 VKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDL 265
Query: 63 VSWTAIIAAFAQ 74
+SW ++IA F+Q
Sbjct: 266 ISWGSMIAGFSQ 277
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C G Q L ++ G ++++ G SL KCG +F + ++V
Sbjct: 309 SACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLV 368
Query: 64 SWTAIIAAFA 73
+W AIIA FA
Sbjct: 369 AWNAIIAGFA 378
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
+C + G Q V+ GF ++ V +SL+S KC D ++FE + + ++V
Sbjct: 411 ACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIV 470
Query: 64 SWTAIIAAFAQE 75
SW ++ A Q+
Sbjct: 471 SWNTLLTACLQQ 482
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G + ++ G + +V+VG++LI+ GK G K+F MPVRN+
Sbjct: 38 IKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNL 97
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSW +II+ F++ C+ +V
Sbjct: 98 VSWNSIISGFSENGFSKDCFDMLV 121
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+++R G + +R G + ++G SL+S CGE+ +F+ M ++ VSW A+I
Sbjct: 351 KSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMI 410
Query: 70 AAFAQ 74
+ ++Q
Sbjct: 411 SGYSQ 415
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C +++ G + LAV+ G +V V +SL+ KCG + +F+K +
Sbjct: 141 LPV--CAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK 198
Query: 61 NVVSWTAIIAAF 72
N VSW +I
Sbjct: 199 NAVSWNTMIGGL 210
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + C A+++ + +V+V S I K G + +F+ + +++ S
Sbjct: 447 ACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLAS 506
Query: 65 WTAIIAAFA 73
W AIIAA+
Sbjct: 507 WNAIIAAYG 515
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R + ++R GF + V + ++ KCG I ++F M + V S
Sbjct: 245 ACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNS 304
Query: 65 WTAIIAAFAQ 74
W A+I AQ
Sbjct: 305 WNALIGGCAQ 314
>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
Length = 829
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S ++ G V NV VG++L+S KCG + + +F+KM R++
Sbjct: 354 LSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSI 413
Query: 63 VSWTAIIAAFAQEWEV-DMCYTF 84
+SWT II+A+ + V + C+ F
Sbjct: 414 ISWTTIISAYVRRRLVAEACHLF 436
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
C + + G + LAV+ + N+ +G+ ++S C D F+ + RN+ S
Sbjct: 53 CARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYS 112
Query: 65 WTAIIAAFA 73
WT ++AAFA
Sbjct: 113 WTGLVAAFA 121
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVV 63
SCG ++R G + + V S + V ++L++ KCG ++F KM RNV+
Sbjct: 154 SCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVI 213
Query: 64 SWTAIIAAFAQE---WEVDMCYTFIV 86
SW+ + A A WE + F++
Sbjct: 214 SWSIMAGAHALHGNVWEALRHFRFML 239
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 3 VTSCGSTRNIRGGTQ-YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PV 59
+++C S ++ G + C+A+ SGF + + V +++++ G+CG + K+F+ M +
Sbjct: 254 LSACSSPALVQDGRLIHSCIAL-SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEAL 312
Query: 60 RNVVSWTAIIAAFAQ 74
R+VVSW +++A+
Sbjct: 313 RDVVSWNIMLSAYVH 327
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-N 61
+ +C + G A G ++ VG+++++ GKCGE + ++F+ + R +
Sbjct: 462 LNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPD 521
Query: 62 VVSWTAIIAAFAQ 74
V W A+IA +AQ
Sbjct: 522 VQLWNAMIAVYAQ 534
>gi|410109967|gb|AFV61063.1| pentatricopeptide repeat-containing protein 81, partial [Aloysia
lycioides]
Length = 379
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE V+
Sbjct: 261 SCSDLATLQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDARESFESSHXETSVT 320
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 321 WNSIIFAYAQ 330
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G + VRSGF + +V S+L+ GKCG ++FE++ +NV
Sbjct: 118 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 177
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSW ++IA ++ + + C
Sbjct: 178 VSWNSMIAGYSLKGDSKSC 196
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + N++ G +R+ A+++V SSLI KCG +F+ MP NV
Sbjct: 219 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 278
Query: 63 VSWTAIIAAFAQ 74
VSW +I+ + +
Sbjct: 279 VSWNVMISGYVK 290
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C S ++ G+ + AV+ G ++ NVYVG++L++F KCG+ +F+ M ++
Sbjct: 411 LSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKS 470
Query: 62 VVSWTAIIAAFA 73
V+W+A+I+ +
Sbjct: 471 TVTWSAMISGYG 482
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+SC N+ G L+++ G + V +SL+ F KC N D +FE + R+VV
Sbjct: 312 SSCSQLLNLNLGRSIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVV 370
Query: 64 SWTAIIAAFAQ 74
+W +II+AF+Q
Sbjct: 371 AWNSIISAFSQ 381
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +RN G + C V+ G + +V + L+ KCGE +F++ RNV
Sbjct: 110 LKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNV 168
Query: 63 VSWTAIIAAFAQ 74
SW+++IA + Q
Sbjct: 169 FSWSSMIAGYVQ 180
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + G ++ G Y+ ++L+ KCG D +F+++ ++
Sbjct: 210 VHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDI 269
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I + Q
Sbjct: 270 VSWTAMIVGYTQ 281
>gi|79506598|ref|NP_196000.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170265|sp|Q9FFN1.1|PP363_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g03800; AltName: Full=Protein EMBRYO DEFECTIVE 175
gi|9758009|dbj|BAB08606.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|26449508|dbj|BAC41880.1| unknown protein [Arabidopsis thaliana]
gi|58013014|gb|AAW62960.1| embryo-defective 175 [Arabidopsis thaliana]
gi|58013016|gb|AAW62961.1| embryo-defective 175 [Arabidopsis thaliana]
gi|332003273|gb|AED90656.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 896
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A+++G+ +++ +G+SLIS KC ++ D K+F M +V+SW
Sbjct: 531 CGTLGFREMGYQIHCYALKAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISW 590
Query: 66 TAIIAAF 72
++I+ +
Sbjct: 591 NSLISCY 597
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK-CGENID-VYKMFEKMPVR 60
+T+C G Q L V+SGF+ +V+V +SL+S K G + D V K+F+++P R
Sbjct: 188 LTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQR 247
Query: 61 NVVSWTAIIAAFAQE 75
+V SW ++++ +E
Sbjct: 248 DVASWNTVVSSLVKE 262
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + + G + A+R G + + V ++LI F K + V ++E M ++
Sbjct: 292 LSSCTDSSVLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDA 351
Query: 63 VSWTAIIAAFAQEWEVD 79
V++T +I A+ VD
Sbjct: 352 VTFTEMITAYMSFGMVD 368
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +RNI G Q + VR G+ +V+ ++L+ K G +FEKMP +V
Sbjct: 209 VNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDV 268
Query: 63 VSWTAIIAA 71
VSW A+I+
Sbjct: 269 VSWNALISG 277
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G Q ++ F+++ + G++L+ KCG D F +P R V
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 572 VSWSAMIGGLAQ 583
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMF-EKMPVRNVVSWTAIIAA 71
R G Q +A+ +GF ++V+V ++L++ G G D ++F E RN VSW +++A
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176
Query: 72 FAQEWEVDMC 81
+ + D C
Sbjct: 177 YVKN---DQC 183
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q LAV+ GF+ + +V + LI KC D ++FE+ ++++ T++I A +Q
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQ 482
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G +++G V+V SSL GKCG D K+F+++P RNVV+
Sbjct: 162 ACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA 221
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 222 WNALMVGYVQ 231
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T N++ G + QC +R ++ + S+ + KCG +D K+F+ +++
Sbjct: 362 MSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDL 421
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+AQ
Sbjct: 422 ILWNTLLAAYAQ 433
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC +F K+ VRNV
Sbjct: 60 CVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVF 119
Query: 64 SWTAIIA 70
SW AII
Sbjct: 120 SWAAIIG 126
>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
Length = 908
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q V+ G +++V+VG+SL+ G G D K+F++M +NVVSWTA++ A+
Sbjct: 49 GVQVHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVD 108
Query: 75 EWEVDM 80
E M
Sbjct: 109 YGEPSM 114
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G L + G NV VG++L++ K G I+ K+F+ MP R+
Sbjct: 340 LAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDG 399
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W A+I A E D
Sbjct: 400 VTWNALIGGHADSEEPD 416
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ CGS N++ G L ++ G+ +NV ++LI+ G D +F+ M +++
Sbjct: 239 LAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDM 298
Query: 63 VSWTAIIAAFAQE 75
+SW +++A +AQ+
Sbjct: 299 ISWNSMMACYAQD 311
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q LAV+ G +N +V S+ + GKCGE DV ++ + R+ +SW + ++F++
Sbjct: 555 GQQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSR 614
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S N G Q ++ G NV V +SLIS G G + +F M +
Sbjct: 138 ISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDT 197
Query: 63 VSWTAIIAAF 72
+SW ++IAA+
Sbjct: 198 ISWNSMIAAY 207
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +RNI G Q + VR G+ +V+ ++L+ K G +FEKMP +V
Sbjct: 209 VNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDV 268
Query: 63 VSWTAIIAA 71
VSW A+I+
Sbjct: 269 VSWNALISG 277
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G Q ++ F+++ + G++L+ KCG D F +P R V
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 572 VSWSAMIGGLAQ 583
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMF-EKMPVRNVVSWTAIIAA 71
R G Q +A+ +GF ++V+V ++L++ G G D ++F E RN VSW +++A
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176
Query: 72 FAQEWEVDMC 81
+ + D C
Sbjct: 177 YVKN---DQC 183
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q LAV+ GF+ + +V + LI KC D ++FE+ ++++ T++I A +Q
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQ 482
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + +I G + + + GF +VYVG++L+ G CG D ++F++MP R+VVSW
Sbjct: 20 CSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSW 79
Query: 66 TAIIAAFA 73
II +
Sbjct: 80 NTIIGLLS 87
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+ G + ++R G ++++ +SLI K G + + +F + RN+VSW A+IA +
Sbjct: 230 KAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANY 289
Query: 73 A 73
A
Sbjct: 290 A 290
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVY-KMFEKMPVRN 61
+++C + ++ G + +A+R+ ++++V +SL+ F KCG ID+ ++F ++ ++
Sbjct: 421 ISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGR-IDIACRLFNQILFKD 479
Query: 62 VVSWTAIIAAFAQEWEVD 79
V SW +I + E++
Sbjct: 480 VASWNTMILGYGMIGELE 497
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
C +V+ G + V ++L+ GKCG ++++F + +N VSW +II A
Sbjct: 135 HCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLA 189
>gi|387965715|gb|AFK13844.1| cyclin domain/pentatricopeptide repeat-containing protein [Beta
vulgaris subsp. vulgaris]
Length = 877
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID-VYKMFEKMPV 59
+PV C R + G C AV+SG+ + VG+SL+S KCG D Y+ F ++
Sbjct: 153 LPV--CARLRVLNAGRSLHCYAVKSGWASETLVGNSLVSMYAKCGLVYDGAYESFCEIND 210
Query: 60 RNVVSWTAIIAAFAQ 74
++V+SW A++A F +
Sbjct: 211 KDVISWNALMAGFIE 225
>gi|302818974|ref|XP_002991159.1| hypothetical protein SELMODRAFT_133020 [Selaginella moellendorffii]
gi|300141090|gb|EFJ07805.1| hypothetical protein SELMODRAFT_133020 [Selaginella moellendorffii]
Length = 632
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS + T ++ +A +G+ + V +G+SL+S GKCG D +F+K+ RN+
Sbjct: 186 LAACGSLEEAK--TIHERIAA-AGYESFVMLGNSLVSLYGKCGSIQDAKHVFDKITARNI 242
Query: 63 VSWTAIIAAFAQE 75
V+W ++IA +AQ+
Sbjct: 243 VTWNSMIATYAQQ 255
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+++ V +SL++ GKCG +F+K+ R+VV+W +IAA+AQ
Sbjct: 313 SDIVVKTSLVNLYGKCGRVASARAVFDKIFARDVVAWNTMIAAYAQ 358
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 20/94 (21%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK-CGEN---------IDV 50
+ +T C ++ G + +AV SG +++ V ++L++ GK CG + + +
Sbjct: 63 IAITVCSDLGDLSSGQSVRAVAVESGLHSDLVVATALVNLYGKSCGFDSGMIVQTAVLTM 122
Query: 51 Y----------KMFEKMPVRNVVSWTAIIAAFAQ 74
Y ++F+ MP R VV+W+A+IAA AQ
Sbjct: 123 YGRFGKLEQAREVFDAMPERTVVAWSALIAACAQ 156
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G A G ++YV ++LI KCG D ++FE MP +N
Sbjct: 335 LSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNE 394
Query: 63 VSWTAIIAAFA 73
VSW A+I+A A
Sbjct: 395 VSWNAMISALA 405
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G+ + V + N +VGS+LI GKCG+ ++F++M ++VV+
Sbjct: 236 ACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVT 295
Query: 65 WTAIIAAFAQ 74
W A+I +AQ
Sbjct: 296 WNAMITGYAQ 305
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 35/52 (67%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SG A+ +V SLI+ +CGE ++F+++ +++VSW ++I+ +++
Sbjct: 153 LKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSR 204
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRN 61
+ +C ++ I G LA++ GF ++VYV +++++ K G ++D +K+F+KM VRN
Sbjct: 125 INACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRN 184
Query: 62 VVSWTAIIAAFAQEWEVD 79
VVSWT +IA ++D
Sbjct: 185 VVSWTTVIAGLVACGKLD 202
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ G + A+++GF ++G++L+ KCG K+F M VRN+
Sbjct: 258 IKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLMEVRNL 317
Query: 63 VSWTAIIAAFA 73
+W ++ +F
Sbjct: 318 ATWNTMLTSFG 328
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + +++RGGT+ A++ G N++V SSLI KC + ++F +P +N
Sbjct: 386 LSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNT 445
Query: 63 VSWTAIIAAFA 73
V W ++I+ ++
Sbjct: 446 VCWNSLISGYS 456
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G V+ G N+++G++L K G+ ++F +MP +N ++
Sbjct: 520 ACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNIT 579
Query: 65 WTAIIAAFAQ 74
WTA++ A+
Sbjct: 580 WTAMVQGLAE 589
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 21 LAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
LAV+ F ++ V +SLI+ + G+ ++F+ M VR+VVSWTA++ +A ++D
Sbjct: 271 LAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLD 330
>gi|302755875|ref|XP_002961361.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
gi|300170020|gb|EFJ36621.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
Length = 1121
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++S G+ +++ G L SGF V V ++L++ GKCG +D K+F +M +++
Sbjct: 440 ISSLGACSSLQDGRALHLLIHESGFDQEVSVANALVTMYGKCGSLLDSAKLFSEMAEKDL 499
Query: 63 VSWTAIIAAFAQEWEVDMC 81
SW + IAA + D C
Sbjct: 500 ASWNSAIAAHSYHGRSDEC 518
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRNVVSWTAIIAAFAQ 74
+++ +G++L+S GKCG +D+ K +F+ + RNV+SWT +++ FA+
Sbjct: 263 SDLEIGNALVSMYGKCGR-LDLAKELFDCLERRNVISWTILVSVFAE 308
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
++G+ L+ GKCG + + F+ + +N+ SWT+I+ A+
Sbjct: 57 FLGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAY 97
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
++G+ L+ GKCG + + F+ + +N+ SWT+I+ A+
Sbjct: 165 FLGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAY 205
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +++ G V+ G+ A+ V S++I+ G+CG ++F ++ +V
Sbjct: 541 LNSCTDPASLQDGVLMHEKIVQCGYEADTVVASAVINMYGRCGGLDRAREIFTRVKTFDV 600
Query: 63 VSWTAIIAAFAQ 74
+ WT ++ + Q
Sbjct: 601 ILWTGMLTVYCQ 612
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + +++RGGT+ A++ G N++V SSLI KC + ++F +P +N
Sbjct: 386 LSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNT 445
Query: 63 VSWTAIIAAFA 73
V W ++I+ ++
Sbjct: 446 VCWNSLISGYS 456
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G V+ G N+++G++L K G+ ++F +MP +N ++
Sbjct: 520 ACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNIT 579
Query: 65 WTAIIAAFAQ 74
WTA++ A+
Sbjct: 580 WTAMVQGLAE 589
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 21 LAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
LAV+ F ++ V +SLI+ + G+ +++F+ M VR+VVSWTA++ +A
Sbjct: 271 LAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYA 324
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q C V+ GF +VYV + LI G CG K+F++MP R++
Sbjct: 149 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 208
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++I A + E D
Sbjct: 209 VSWNSMIDALVRFGEYD 225
Score = 34.7 bits (78), Expect = 7.7, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV---ANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+++C ++ GT +R V +V V +SLI KCG ++F+ M
Sbjct: 249 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 308
Query: 60 RNVVSWTAIIAAFAQEWEVDMCYTF 84
R++ SW A+I FA + F
Sbjct: 309 RDLASWNAMILGFATHGRAEEAMNF 333
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S + G + A+R+ + V VGS+L+ KCG ++F++MP+RNV++W
Sbjct: 446 CASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITW 505
Query: 66 TAIIAAFA 73
II A+
Sbjct: 506 NVIIMAYG 513
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA--QEWEV 78
G ++V + ++L++ GKCG D YK+F+++ R+ VSW +II+A +EWEV
Sbjct: 42 GSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEV 96
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C +R G + A+R+ + N +VGS+L+ CG+ +F+ + R +
Sbjct: 225 ACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIG 284
Query: 64 SWTAIIAAFAQ 74
W A+IA +AQ
Sbjct: 285 LWNAMIAGYAQ 295
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + + G Q LAV+ G N+ V ++++ KCG ++ +F+ M +++
Sbjct: 379 LTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDA 438
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VSW AIIAA Q V+ V
Sbjct: 439 VSWNAIIAAHEQNEHVEETLALFV 462
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q CLA++ GF ++V G++L+ C + + +F +MP RN
Sbjct: 177 LKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNS 236
Query: 63 VSWTAIIAAFAQ 74
V W+A+IA + +
Sbjct: 237 VCWSAVIAGYVR 248
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + + G + ++SG + +VGS++I KCG ++ K+ E++ R
Sbjct: 480 VKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTT 539
Query: 63 VSWTAIIAAFAQE 75
VSW +II+ F+ E
Sbjct: 540 VSWNSIISGFSSE 552
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + I G Q +GFV V+V + L+ F KC + +F+KMP R+V+SW
Sbjct: 48 CSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISW 107
Query: 66 TAIIAAFA 73
+I +A
Sbjct: 108 NTMIFGYA 115
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + G Q ++ ++VY+ S+++ KCG D MFEK P R+ V+W
Sbjct: 584 CANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTW 643
Query: 66 TAIIAAFA 73
+A+I A+A
Sbjct: 644 SAMICAYA 651
Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC GTQ A+++ F + VG++ + KC +D K+F P S
Sbjct: 280 SCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQS 339
Query: 65 WTAIIAAFAQEWEV 78
A+I +A++ +V
Sbjct: 340 HNALIVGYARQDQV 353
>gi|302759985|ref|XP_002963415.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
gi|300168683|gb|EFJ35286.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
Length = 500
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
G+ ++V + ++L+ GKCG D +F+KMP R++V+W A+IAA++Q + D +
Sbjct: 216 GYCSDVILDTALVDMYGKCGSLDDARMVFDKMPERDIVTWNAMIAAYSQHGQGDKAF 272
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S +++ G + SG + ++ +L++ K G + ++F MP NV
Sbjct: 92 ITACCSLKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYAKLGSLGEATRIFHSMPTDNV 151
Query: 63 VSWTAIIAAFAQ 74
V+W +IAAF+Q
Sbjct: 152 VAWNVMIAAFSQ 163
>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 621
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q V+ F +++VGS+L++ + E D +F+ MP RN
Sbjct: 294 LKACAEEKALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNT 353
Query: 63 VSWTAIIAAFAQ 74
++WT++I+ +AQ
Sbjct: 354 ITWTSLISGYAQ 365
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + + G Q C V+ G+ +NV + S++ F +CG+ MF+KM R+V
Sbjct: 194 LKSCGEQCDGKLGQQVHCCVVKGGW-SNVIMDSAVAHFYAQCGDVDGASMMFDKMTSRDV 252
Query: 63 VSWTAIIAAFAQEWEVD 79
+SWT +I A+ Q D
Sbjct: 253 ISWTTMITAYVQHGRGD 269
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS R++ G + +++ N+ +GS+L+ KCGE ++ E+MP R+
Sbjct: 395 LSACGSLRSLCLGKELHAQVIKNSIQENLQIGSTLVWCYCKCGEYTYAARILEEMPDRDA 454
Query: 63 VSWTAIIAAF 72
V+WTA+I+ +
Sbjct: 455 VAWTAMISGY 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + + ++ +NV+VGSSLI +CG+ + ++F +P N+
Sbjct: 496 LKACAKLEALQDGRRIHGVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEHNL 555
Query: 63 VSWTAIIAAFAQ 74
V+W II FAQ
Sbjct: 556 VTWKVIITGFAQ 567
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG+ ++RG +AVRS +++ ++LI+ + E D K+F++MP R V
Sbjct: 96 LRSCGAVADVRG---VHGVAVRSPDGPGIFLANNLITSYARFHEIPDARKVFDEMPERTV 152
Query: 63 VSWTAIIAAFAQ 74
VSWTA++ + +
Sbjct: 153 VSWTAMMNGYQK 164
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CG+ N+ G Q + GF +++YVG+S+I KCG K+F++M R+VV
Sbjct: 151 ACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVV 210
Query: 64 SWTAIIAAFAQ 74
SWT +I A+A+
Sbjct: 211 SWTELIVAYAK 221
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+++C ++ + +A RSGF NV VGS+LI KCG + YK+FE M R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341
Query: 61 NVVSWTAIIAAFA 73
NV S++++I +A
Sbjct: 342 NVFSYSSMILGYA 354
>gi|449441630|ref|XP_004138585.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Cucumis sativus]
Length = 600
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G Q CL ++ F ++ V SSL++ K D K+F++MP RN
Sbjct: 216 LSSCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYTKNDNLYDARKVFDEMPTRNS 275
Query: 63 VSWTAIIAAFAQ 74
VSWT +I + Q
Sbjct: 276 VSWTTMIVGYGQ 287
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q ++ GF + +VGS+++ F KCG D F + R++V
Sbjct: 117 SCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVL 176
Query: 65 WTAII 69
W ++
Sbjct: 177 WNVML 181
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SCG T Q ++ GF A + + + LI KCG + F + ++
Sbjct: 317 LSSCGFTSGASELMQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLIAEPDL 376
Query: 63 VSWTAIIAAFA 73
V+WT+II A
Sbjct: 377 VTWTSIICGLA 387
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ GG ++ G ++V+V ++LI+ K G D ++F+ M VR++VSW
Sbjct: 258 CAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSW 317
Query: 66 TAIIAAFAQ 74
+IIAA+ Q
Sbjct: 318 NSIIAAYEQ 326
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + C ++ GF +VYV +SLI + G +K+F MPVR+V SW A+I+ F Q
Sbjct: 166 GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225
Query: 75 EWEV 78
V
Sbjct: 226 NGNV 229
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRNVVS 64
G + R G VR ++ ++ +G++L++ K G +ID + +FE++P R+V+S
Sbjct: 360 GQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLG-SIDCARAVFEQLPSRDVIS 418
Query: 65 WTAIIAAFAQ 74
W +I +AQ
Sbjct: 419 WNTLITGYAQ 428
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+++ +V+V + LI GKCG D +F ++P V W AII++
Sbjct: 479 IKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLG 529
>gi|357452657|ref|XP_003596605.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485653|gb|AES66856.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++++ G AVR+G V NV+V ++L++ KC + + +F+ MP R+VVS
Sbjct: 171 ACADLKDLKSGKAIHGFAVRNGMVENVFVCNALVNLYAKCLCVREAHAIFDLMPHRDVVS 230
Query: 65 WTAIIAAFA-QEWE 77
W+ ++ F +E+E
Sbjct: 231 WSGVLTYFTNKEYE 244
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + V+ G+ NV+ GS+L+ KC D +++F+ + +RN V+W A+I+ +AQ
Sbjct: 119 GQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQ 178
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L ++SGF N +V SSLI KCG D K F+ P + ++
Sbjct: 415 SCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIA 474
Query: 65 WTAIIAAFAQ 74
W ++I +AQ
Sbjct: 475 WNSLIFGYAQ 484
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
CLA++SG A++Y +++IS KCGE KMF + R+ VSW +IA F
Sbjct: 22 HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGF 75
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG NI G +V+SG + +V+V S+LI K G+ ++F+KM RNV
Sbjct: 164 LKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNV 223
Query: 63 VSWTAIIAAFAQ 74
VSWTAIIA
Sbjct: 224 VSWTAIIAGLVH 235
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CGS + G Q + G V S+LIS KCG + K+F M + N+
Sbjct: 467 LSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNI 526
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I +A+
Sbjct: 527 ISWTAMINGYAE 538
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G ++ GF + +V ++L + KCG+ V ++FEKM + +VVSWT +I + Q
Sbjct: 277 GKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQ 336
Query: 75 EWE 77
+ E
Sbjct: 337 KGE 339
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G Q +R G V + V +S+++ K G +F + +++
Sbjct: 366 ISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDI 425
Query: 63 VSWTAIIAAFAQ 74
+SW+ IIA ++Q
Sbjct: 426 ISWSTIIAVYSQ 437
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S ++ G Q L ++GF + V S LI KCG D K+FE + +V
Sbjct: 475 LASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDV 534
Query: 63 VSWTAIIAAFAQE 75
+SWTA+I+ +AQ
Sbjct: 535 ISWTAMISGYAQH 547
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +I G + GF + +V +SL+ K G D K+F + RN
Sbjct: 171 IQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQ 230
Query: 63 VSWTAIIAAF 72
VSW A+I+ F
Sbjct: 231 VSWNAMISGF 240
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S R++ Q + +SG + V + ++L+ KCGE + K+F+ N
Sbjct: 375 LNSIADMRSLEYVKQLHGMIWKSGSIG-VSLCNALMDAYAKCGELDAMRKLFDTWEESNQ 433
Query: 63 VSWTAIIAAFAQ--EWE 77
+SWT ++ A++Q EWE
Sbjct: 434 ISWTTLVTAYSQSSEWE 450
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWTAIIAAFA 73
G LAV++G ++YV ++LI F G CG+ + K+F+++P VR+VV+W A++A +
Sbjct: 149 GAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGYV 208
Query: 74 Q 74
+
Sbjct: 209 R 209
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
R+G ++ +G++L+ KCG ++F+ MP R+V +W ++I A
Sbjct: 291 RAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLA 340
>gi|302798306|ref|XP_002980913.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
gi|300151452|gb|EFJ18098.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
Length = 809
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++S G+ +++ G L SGF V V ++L++ G+CG +D K+F +M +++
Sbjct: 332 ISSLGACSSLQDGRALHLLIDESGFDREVSVANALVTMYGRCGSLLDSAKLFSEMAEKDL 391
Query: 63 VSWTAIIAAFAQEWEVDMC 81
SW + IAA A D C
Sbjct: 392 ASWNSAIAAHAYHGRSDEC 410
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 33/46 (71%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+++ +G++L+S GKCG ++F+ + ++NV+SWT +++ FA+
Sbjct: 155 SDLEIGNALVSMYGKCGRLDLAKQLFDCLEMKNVISWTILVSVFAE 200
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
++G+ L+ GKCG + + F+ + +N+ SWT+I+ A+
Sbjct: 57 FLGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAY 97
>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
Length = 460
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R 60
+ +C +R G A ++GFV V+V +SL+ G CG +K+F++MPV R
Sbjct: 123 LQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGR 182
Query: 61 NVVSWTAIIAAFA 73
N+VSW +++ +FA
Sbjct: 183 NLVSWNSMLNSFA 195
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RN 61
+T+C + G + + G V N +V ++LI KCG D ++FE+M + R
Sbjct: 226 LTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRT 285
Query: 62 VVSWTAIIAAFA 73
VVSWT++I A
Sbjct: 286 VVSWTSLIVGLA 297
>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
Length = 742
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S ++ G V NV VG++L+S KCG + + +F+KM R++
Sbjct: 267 LSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSI 326
Query: 63 VSWTAIIAAFAQEWEV-DMCYTF 84
+SWT II+A+ + V + C+ F
Sbjct: 327 ISWTTIISAYVRRRLVAEACHLF 349
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVV 63
SCG ++R G + + V S + V ++L++ KCG ++F KM RNV+
Sbjct: 67 SCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVI 126
Query: 64 SWTAIIAAFAQE---WEVDMCYTFIV 86
SW+ + A A WE + F++
Sbjct: 127 SWSIMAGAHALHGNVWEALRHFRFML 152
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 3 VTSCGSTRNIRGGTQ-YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PV 59
+++C S ++ G + C+A+ SGF + + V +++++ G+CG + K+F+ M +
Sbjct: 167 LSACSSPALVQDGRMIHSCIAL-SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEAL 225
Query: 60 RNVVSWTAIIAAFAQ 74
R+VVSW +++ +
Sbjct: 226 RDVVSWNIMLSTYVH 240
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-N 61
+ +C + G A G ++ VG+++++ GKCGE + ++F+ + R +
Sbjct: 375 LNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPD 434
Query: 62 VVSWTAIIAAFAQ 74
V W A+IA +AQ
Sbjct: 435 VQLWNAMIAVYAQ 447
>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T C + G Q ++SG++++V VG++L++ KCG K F +M R +
Sbjct: 395 LTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAFVEMSTRTL 454
Query: 63 VSWTAIIAAFAQ 74
+SWT +I AQ
Sbjct: 455 ISWTTMITGLAQ 466
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+++G ++ V +SL++ KCG + K+F+ + RNVV+WTA++ + Q
Sbjct: 101 IKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQ 152
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C + +I+ G Q ++ + +G++L S K G +F+ + +
Sbjct: 180 IALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEK 239
Query: 61 NVVSWTAIIAAFAQEWEVDMCYTF 84
NV+SWTA+I+A + + M F
Sbjct: 240 NVISWTAVISACGENGKAAMGLRF 263
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C T + G L+++ G+ N+ + +S++ KCG + +F KM N+V+W
Sbjct: 286 CCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTW 345
Query: 66 TAIIAAFAQEWEV 78
A+I+ AQ ++
Sbjct: 346 NAMISGHAQAMDL 358
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CG+ N+ G Q + GF +++YVG+S+I KCG K+F++M R+VV
Sbjct: 151 ACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVV 210
Query: 64 SWTAIIAAFAQ 74
SWT +I A+A+
Sbjct: 211 SWTELIVAYAK 221
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+++C ++ + +A RSGF NV VGS+LI KCG + YK+FE M R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341
Query: 61 NVVSWTAIIAAFA 73
NV S++++I +A
Sbjct: 342 NVFSYSSMILGYA 354
>gi|242047556|ref|XP_002461524.1| hypothetical protein SORBIDRAFT_02g004050 [Sorghum bicolor]
gi|241924901|gb|EER98045.1| hypothetical protein SORBIDRAFT_02g004050 [Sorghum bicolor]
Length = 867
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CGS G Q +SG + VG+++IS GKCGE D FE M R++VSW
Sbjct: 505 CGSLGFAELGKQMHSFTAKSGLLCARGVGNAIISMYGKCGELKDAGSFFEGMTCRDLVSW 564
Query: 66 TAIIAA 71
A+I A
Sbjct: 565 NAMITA 570
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C N R GTQ L +SG +++ V ++L+ KCG D + F+ M R+V
Sbjct: 152 LTACARRGNPRLGTQVHALVAKSGHASSLLVANALLGMYVKCGRFGDALRAFDGMDRRDV 211
Query: 63 VSWTAIIAAFAQ 74
SW A++A +
Sbjct: 212 SSWNAVLAGLVE 223
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID-VYKMFEKMPVRNVVSWTAIIAAFA 73
G L+++SG ++ VG++LI F + G ++D V +F++MPV++V+SWT ++ +
Sbjct: 266 GEAVHALSLKSGLETDLSVGNALIGFYAEHGASVDDVVSVFQRMPVKDVISWTGLLNGYM 325
Query: 74 QEWEVDM 80
+ VDM
Sbjct: 326 EFGLVDM 332
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + Q ++ G V++ ++ ++LI C KCG + D + +FE+
Sbjct: 397 LNACAIAADRKASEQVHAFVIKCGCVSSPWIDAALIDMCIKCGRSGDAHLLFEQWQHDES 456
Query: 63 --VSWTAIIAAFAQEWEVD 79
++W +++ A ++ E +
Sbjct: 457 FHIAWNSLLLASVRDGEYE 475
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRN 61
+ +C + G Q VRSGF +VYVG+SLI F K G BI+V ++ F+++ +
Sbjct: 44 IRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG-BIEVARLVFDQLLEKT 102
Query: 62 VVSWTAIIAAFAQ 74
V+WT IIA + +
Sbjct: 103 AVTWTTIIAGYTK 115
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + GG Q +R G +V V + LI F KC K+F++M V+N+
Sbjct: 145 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 204
Query: 63 VSWTAIIAAFAQ---EWE 77
+SWT +I+ + Q +WE
Sbjct: 205 ISWTTMISGYMQNSFDWE 222
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSCGS + G Q +++ +N +V + LI K D K+F+ M +NV
Sbjct: 246 LTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNV 305
Query: 63 VSWTAIIAAFAQE 75
+S+ A+I ++ +
Sbjct: 306 ISYNAMIEGYSSQ 318
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ + ++R G Q+ V+ G +V ++L+ KCG + KMF R+V
Sbjct: 448 ITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV 507
Query: 63 VSWTAIIAAFAQEWEVD 79
V W ++I+ AQ E +
Sbjct: 508 VCWNSMISTHAQHGEAE 524
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q L ++ G +++ GS+LI KC D +FE+M +++V W A+ + Q
Sbjct: 361 QIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHL 420
Query: 77 E 77
E
Sbjct: 421 E 421
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q L VRSG + + + G++LIS KCG ++ ++F++M +++VS
Sbjct: 465 ACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVS 524
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 525 WNALIDGYA 533
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
+++IS +CG + +F++MP +++VSW +IA +AQ+ ++
Sbjct: 363 NTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQM 406
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q C V+ GF +VYV + LI G CG K+F++MP R++
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 217
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++I A + E D
Sbjct: 218 VSWNSMIDALVRFGEYD 234
Score = 34.7 bits (78), Expect = 8.5, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV---ANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+++C ++ GT +R V +V V +SLI KCG ++F+ M
Sbjct: 258 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 317
Query: 60 RNVVSWTAIIAAFAQEWEVDMCYTF 84
R++ SW A+I FA + F
Sbjct: 318 RDLASWNAMILGFATHGRAEEAMNF 342
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +++GF+++V VG++L++ KCG K F +M +R ++SWT++I +AQ
Sbjct: 402 GEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQ 461
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++ GTQ L ++ GF +N+ + +S++ KCG + K+F++M ++V+W
Sbjct: 281 CCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTW 340
Query: 66 TAIIAAFAQ 74
A+IA A+
Sbjct: 341 NAMIAGHAR 349
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
V++G + ++ + L++ KCG K+F+++P RNVVSWT ++ + +
Sbjct: 96 VKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHD 148
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q +++ + +G+SL S KCG K F ++ +NV+SWT +I+A+
Sbjct: 189 GKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGD 248
Query: 75 EWEVDMCYTFIV 86
E F V
Sbjct: 249 NGEAATGLQFFV 260
>gi|225444971|ref|XP_002279824.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Vitis vinifera]
Length = 476
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SCG T+++ G + L RS F +V + + LI G+CG D ++F++M RN+
Sbjct: 138 LSSCGKTKSLEVGRRVHDLLARSKFGGDVELNNKLIEMYGRCGSMRDARRVFDRMRERNM 197
Query: 63 VSWTAIIAAFA 73
SW +I +A
Sbjct: 198 SSWHLMINGYA 208
>gi|147835805|emb|CAN64107.1| hypothetical protein VITISV_013147 [Vitis vinifera]
Length = 497
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SCG T+++ G + L RS F +V + + LI G+CG D ++F++M RN+
Sbjct: 140 LSSCGKTKSLEVGRRVHDLLARSKFGGDVELNNKLIEMYGRCGSMRDARRVFDRMRERNM 199
Query: 63 VSWTAIIAAFA 73
SW +I +A
Sbjct: 200 SSWHLMINGYA 210
>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Brachypodium distachyon]
Length = 849
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 10 RNIRG--GTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
++ RG G Q +A + G + +VG+SL+S G+CG D K+FE M RN+VSW
Sbjct: 75 KSCRGDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWN 134
Query: 67 AIIAAFA 73
A++AA A
Sbjct: 135 ALMAAVA 141
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G + C A+++ + ++ SS+I KCG D F+++ ++
Sbjct: 484 LVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDA 543
Query: 63 VSWTAIIAAFA 73
VSWT +I +A
Sbjct: 544 VSWTVMITGYA 554
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAA 71
G LAV+SG+ A V + L+ KCGE D F + P RNVVSW ++
Sbjct: 184 GRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGG 243
Query: 72 FAQEWEVDMCYTFI 85
+A+ E + +
Sbjct: 244 YARNGEAGAAFGLL 257
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ +++ G +R+G + ++ SL+S +CG +F+ + ++ VS
Sbjct: 383 ACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVS 442
Query: 65 WTAIIAAFAQ 74
W +IA ++Q
Sbjct: 443 WNTMIAGYSQ 452
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T+N+ G + QC ++R F + + + SS + KCG +D K+FE +++
Sbjct: 360 MSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDL 419
Query: 63 VSWTAIIAAFA 73
+ W ++AA+A
Sbjct: 420 ILWNTLLAAYA 430
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ G +++G V+V SSL GKCG D +F+++P RNVV+
Sbjct: 160 ACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVA 219
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 220 WNALMVGYVQ 229
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC +F ++ VRNV
Sbjct: 58 CVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVF 117
Query: 64 SWTAIIA 70
SW AII
Sbjct: 118 SWAAIIG 124
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S ++RGG + +++ G NV+V SLI KC + D +F+ +P +N+
Sbjct: 386 LSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNI 445
Query: 63 VSWTAIIAAFA 73
V W ++++ ++
Sbjct: 446 VCWNSLVSGYS 456
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 21 LAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
LA++S F +++ V +SLI+ + G+ K+F++M V++VVSWTA++ +++ ++D
Sbjct: 271 LAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLD 330
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G ++ G ++++G++L K G+ +MF +MP RN V+
Sbjct: 520 ACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVT 579
Query: 65 WTAIIAAFAQ 74
WTA+I A+
Sbjct: 580 WTAMIQGLAE 589
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q + V+ G+ NV+ GS+L+ KC D +++F+ + +RN V+W A+I+ +AQ
Sbjct: 119 GQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQ 178
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L ++SGF N +V SSLI KCG D K F+ P + ++
Sbjct: 314 SCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIA 373
Query: 65 WTAIIAAFAQ 74
W ++I +AQ
Sbjct: 374 WNSLIFGYAQ 383
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
CLA++SG A++Y +++IS KCGE KMF + R+ VSW +IA F
Sbjct: 22 HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGF 75
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G + VRSGF + +V S+L+ GKCG ++FE++ +NV
Sbjct: 214 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 273
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSW ++IA ++ + + C
Sbjct: 274 VSWNSMIAGYSLKGDSKSC 292
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G ++SGF +V V SS + KC D K+F++MP R+V
Sbjct: 113 LKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDV 172
Query: 63 VSWTAIIAAFAQE 75
SW +I+ + Q+
Sbjct: 173 ASWNNVISCYYQD 185
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + N++ G +R+ A+++V SSLI KCG +F+ MP NV
Sbjct: 315 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 374
Query: 63 VSWTAIIAAFAQ 74
VSW +I+ + +
Sbjct: 375 VSWNVMISGYVK 386
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + + S N V +L+ KCG + +F ++P R+ VS
Sbjct: 418 ACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVS 477
Query: 65 WTAIIAAFA 73
WT++IAA+
Sbjct: 478 WTSMIAAYG 486
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC ++ G ++ +G N+ V S+LI KCG D +F MP RNV
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388
Query: 63 VSWTAIIAAFAQ 74
VSW A+I AQ
Sbjct: 389 VSWNAMIVGCAQ 400
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G Q + F+ NV++ ++L KCGE +F+ + +N+VSW +I+
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMIS 229
Query: 71 AFAQEWEVDMC 81
+A+ + + C
Sbjct: 230 GYAKNGQPEKC 240
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+SC ++ G ++ +G N+ V S+LI KCG D +F MP RNV
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388
Query: 63 VSWTAIIAAFAQ 74
VSW A+I AQ
Sbjct: 389 VSWNAMIVGCAQ 400
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G Q + F+ NV++ ++L KCGE +F+ + +N+VSW +I+
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMIS 229
Query: 71 AFAQEWEVDMC 81
+A+ + + C
Sbjct: 230 GYAKNGQPEKC 240
>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
Length = 833
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R++ G L + G +V +G++L++ G+CG ++F +MP RNV
Sbjct: 208 LNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNV 267
Query: 63 VSWTAIIAA 71
VSW A++A+
Sbjct: 268 VSWNAMVAS 276
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G + SG + V ++L++F KCG +F + R+V
Sbjct: 623 LNACVAGGAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDV 682
Query: 63 VSWTAIIAAFAQ 74
VSW IIA FA
Sbjct: 683 VSWNGIIAGFAH 694
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + + G + R +++ G+ L++ +C + K+F++M R+VVS
Sbjct: 7 ACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERDVVS 66
Query: 65 WTAIIAAFAQ 74
WTA+I+A+AQ
Sbjct: 67 WTAMISAYAQ 76
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++ + V ++L++ G+CG D ++F M R++VSW A+I+A+AQ
Sbjct: 334 LLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQ 381
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
V +++++ GKCGE +FE RN+ SW ++I+A+A
Sbjct: 552 VAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYA 592
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID--------VYK 52
M + +C R++ G L+V SGF + + V ++ + C + V
Sbjct: 409 MALDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAG 468
Query: 53 MFEKMPVRNVVSWTAIIAAFAQ 74
+FE M R+V+SW +I + Q
Sbjct: 469 IFESMAARDVISWNTMITGYVQ 490
>gi|410109957|gb|AFV61058.1| pentatricopeptide repeat-containing protein 81, partial
[Acantholippia salsoloides]
Length = 402
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE V+
Sbjct: 273 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAQESFESSHKETSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ + C +
Sbjct: 4 AKCRRVKDANKVFKYMQERNAVSWNALIGGYAEMGNLQRCIELFI 48
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + GT+ A G NVYVG++L+ KCG+ ++F K+P +N
Sbjct: 326 LSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNE 385
Query: 63 VSWTAIIAAFA 73
+W A+I A
Sbjct: 386 ATWNALICGLA 396
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VGS+L+ KCGE + ++F+ + ++VV+W A+I +AQ
Sbjct: 255 VGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQ 296
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
L R G A+ + SL++ G+ + ++F+ +P R+VVSW A++ A+ +
Sbjct: 139 HALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYER 194
>gi|225217011|gb|ACN85298.1| EMB2261 putative [Oryza coarctata]
Length = 621
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G + C +R G NV V S+L+ KCG Y +FE VRN ++
Sbjct: 346 ACAGLSSVNPGKEIHCRFLRMGGWRNVVVESALVDLYAKCGAVDYAYGVFEASIVRNTIT 405
Query: 65 WTAIIAAFAQ 74
W A+I FAQ
Sbjct: 406 WNAMIGGFAQ 415
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ G+ + G Q V G NV V SS + KC ++ K+F++M VRN
Sbjct: 245 MTALGNLKMGNRGRQAHAQVVTRGLCGNVIVESSTLDMYAKCRMIVEARKVFDRMQVRNA 304
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW A++ + Q E +
Sbjct: 305 VSWCALLGGYCQNGEYE 321
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q Q ++ F NV GS+LI KCG D + FE+MP +NV SW+++I + +
Sbjct: 299 GQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGK 358
Query: 75 EWEVD 79
D
Sbjct: 359 NGRPD 363
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + + GT V+ GF++N +V S+L+ GKC K+F+++P RNV
Sbjct: 70 LKSCSAVLCPQLGTSVHAHIVKMGFLSNPFVASALVDMYGKCACIFSARKLFDEIPQRNV 129
Query: 63 VSWTAIIAAFAQ 74
V W A+I+ +
Sbjct: 130 VVWNAMISLYTH 141
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
++R+ + +GS L+ G+CG I+ +F M R+VV+W+++I+A+A E
Sbjct: 223 SIRNDIDRHPQLGSGLLDAYGRCGCLINASNVFCGMKERDVVAWSSLISAYALHGE 278
>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Cucumis sativus]
Length = 616
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q CL ++ F ++ V SSL++ K D K+F++MP RN VSWT +I + Q
Sbjct: 244 GKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEMPTRNSVSWTTMIVGYGQ 303
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q ++ GF + +VGS+++ F KCG D F + R++V
Sbjct: 133 SCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVL 192
Query: 65 WTAII 69
W ++
Sbjct: 193 WNVML 197
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ S + G + L++++GF ++ +G+SL+S +CG +D ++F++M NV
Sbjct: 463 ISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNV 522
Query: 63 VSWTAIIAAFAQ 74
+SWT++I+ A+
Sbjct: 523 ISWTSMISGLAK 534
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC--GENI-DVYKMFEKMPV 59
+++C + R G Q LA+R G ++ V L+ K G+++ + ++F +MP
Sbjct: 262 LSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPK 321
Query: 60 RNVVSWTAIIAAFAQEWEVD 79
NV++WTA+++ + Q D
Sbjct: 322 HNVMAWTALLSGYVQRGSQD 341
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
G Q ++ GF ++VY+ +SLI F CG +F+KMP R++VSW A+I AF
Sbjct: 145 GKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAF 202
>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
Length = 771
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
VA V +L++ GKCG D ++ + MPVR VSWTA+IAA+AQ
Sbjct: 325 VATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQ 371
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAFAQ 74
F ++ + +++I+ GKCG ++FE +P+R +VV+WTA+I A+AQ
Sbjct: 426 FSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQ 475
>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
Length = 745
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SC S +R G + GF +V +G++L++ KCG D K F+ + ++V
Sbjct: 379 VDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDV 438
Query: 63 VSWTAIIAAFAQ 74
VSW+A+IAA AQ
Sbjct: 439 VSWSAMIAASAQ 450
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + S N+ V ++LI+ KCG D +F M V++VVS
Sbjct: 179 ACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVS 238
Query: 65 WTAIIAAF 72
W A+IAA+
Sbjct: 239 WNAMIAAY 246
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRN 61
+ +C ++ G Q A GF +V V +SLI KCG + +F M +R+
Sbjct: 75 LAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRD 134
Query: 62 VVSWTAIIAAFAQEWEVDM 80
++S TA+I A+ + + D+
Sbjct: 135 IISVTAMIGAYVRHGKNDL 153
>gi|297736881|emb|CBI26082.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C ++R G + G N+ V SSLI GKC D ++F+ M RNV
Sbjct: 135 VNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNV 194
Query: 63 VSWTAIIAAFAQ 74
VSWT++I A+ Q
Sbjct: 195 VSWTSMITAYGQ 206
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G +R G +N V S+L+ KCG K+F ++P +V
Sbjct: 237 INACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSV 296
Query: 63 VSWTAIIAAFAQ 74
+ +T++I A+
Sbjct: 297 IPYTSMIVGAAK 308
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + I G ++SG+ +++VG++LI KCG +D ++F+K+ VR+
Sbjct: 155 LKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDA 214
Query: 63 VSWTAIIAAFAQEWEVD 79
V W +++AA+AQ D
Sbjct: 215 VLWNSMLAAYAQNGHPD 231
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + R GF +N V ++LI KCG +FE++ + VVSW AII +A
Sbjct: 268 GREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYA 326
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++N+ G RS + ++ +SLI KCG D +F+ +P R+V
Sbjct: 69 ITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDV 128
Query: 63 VSWTAIIAAFAQ 74
VSWT +I +AQ
Sbjct: 129 VSWTYLITGYAQ 140
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 5 SCGSTRNIRG-GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CG RG G Q LAV+ +VYVGS+L+ +C + ++F+ + +N V
Sbjct: 175 ACGG----RGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV 230
Query: 64 SWTAIIAAFAQE 75
SW A+IA FA++
Sbjct: 231 SWNALIAGFARK 242
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SG +V ++++ K G +D K+F+++ R++V+W ++ AFAQ
Sbjct: 291 IKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQ 342
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C T ++R G +G V NV+V ++L+ F GKCG +F+ M +N+
Sbjct: 216 LSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNI 275
Query: 63 VSWTAIIAAFA 73
VSW+++I +A
Sbjct: 276 VSWSSMIQGYA 286
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G + L V++G A+ +V SLI+ KCG + +K+F+ +P +N
Sbjct: 115 LKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNF 174
Query: 63 VSWTAIIAAF 72
SWTA I+ +
Sbjct: 175 ASWTATISGY 184
>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C + + G Q ++ GF++NVY+ S+++ KCGE +F++MP R V
Sbjct: 76 VSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEISSARVLFDQMPQRTV 135
Query: 63 VSWTAIIAAF 72
V+W ++I +
Sbjct: 136 VTWNSLIYGY 145
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GTQ L +++G NV VG+SL+ KCG+ D +F+ M RNV++WT+++ ++Q
Sbjct: 189 GTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQ 248
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V + G++ + G L R+G+++++ V + L+S +CG D ++F M +V
Sbjct: 380 VGAIGNSSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDV 439
Query: 63 VSWTAIIAAFAQ 74
+SW A++ AFA
Sbjct: 440 ISWNALLTAFAH 451
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q C ++ G +NVY+ ++L++ KC ++ D K+ + + ++W A+IA +++
Sbjct: 292 QVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSK 350
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q C V+ GF +VYV + LI G CG K+F++MP R++
Sbjct: 135 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 194
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++I A + E D
Sbjct: 195 VSWNSMIDALVRFGEYD 211
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV---ANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+++C ++ GT +R V +V V +SLI KCG ++F+ M
Sbjct: 235 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 294
Query: 60 RNVVSWTAIIAAFAQEWEVDMCYTF 84
R++ SW A+I FA + F
Sbjct: 295 RDLASWNAMILGFATHGRAEEAMNF 319
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG + G Q C +++SGF+ +V VG+SL+ K + D +F++M ++NVVSW
Sbjct: 114 CGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSW 173
Query: 66 TAIIAAFAQ 74
T++++ +A+
Sbjct: 174 TSLLSGYAR 182
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTR-NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C S+ + G Q AV+SG + V S+L++ K G K+F + R+
Sbjct: 512 INACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD 571
Query: 62 VVSWTAIIAAFAQ 74
+VSW ++I + Q
Sbjct: 572 IVSWNSMITGYGQ 584
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
I GG Q + V++GF +V ++LI K D +F+ M VR+ V+W +I
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGG 280
Query: 72 FA 73
+A
Sbjct: 281 YA 282
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRNVVS 64
C R + Q C V++G+ + ++L+ KC + +K+F NVV+
Sbjct: 316 CSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVT 375
Query: 65 WTAIIAAFAQ 74
WTA+I F Q
Sbjct: 376 WTAMIGGFVQ 385
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q +RSGF ++ YV SSL++F KC E K+F+++ RN+
Sbjct: 99 LKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNL 158
Query: 63 VSWTAIIAAFAQ 74
V W+A+++ +A+
Sbjct: 159 VCWSAMVSGYAR 170
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +RNI G Q + VR G+ +V+ ++L+ K G +FEKMP +V
Sbjct: 209 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 268
Query: 63 VSWTAIIAA 71
VSW A+I+
Sbjct: 269 VSWNALISG 277
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G Q ++ F+++ + G++L+ KCG D F +P R V
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 572 VSWSAMIGGLAQ 583
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMF-EKMPVRNVVSWTAIIAAFA 73
G Q +A+ +GF ++V+V ++L++ G G D ++F E RN VSW +++A+
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 178
Query: 74 QEWEVDMC 81
+ D C
Sbjct: 179 KN---DQC 183
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G ++SG +YVGS++I KCG D K+F MP +NVVSW ++I
Sbjct: 465 VEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITG 524
Query: 72 FAQ 74
+AQ
Sbjct: 525 YAQ 527
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+SC + + G Q +V+ G ++V VG+S+++F KCG + FE + N V
Sbjct: 356 SSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSV 415
Query: 64 SWTAIIAAFAQEWE 77
W II+ FAQ E
Sbjct: 416 CWAGIISGFAQNGE 429
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + T CL ++ GF ++V S LIS K + +F+ MP R+
Sbjct: 48 ISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDD 107
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA ++Q
Sbjct: 108 VSWNSMIAGYSQ 119
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +RNI G Q + VR G+ +V+ ++L+ K G +FEKMP +V
Sbjct: 116 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 175
Query: 63 VSWTAIIAA 71
VSW A+I+
Sbjct: 176 VSWNALISG 184
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G Q ++ F+++ + G++L+ KCG D F +P R V
Sbjct: 419 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 478
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 479 VSWSAMIGGLAQ 490
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMF-EKMPVRNVVSWTAIIAAFA 73
G Q +A+ +GF ++V+V ++L++ G G D ++F E RN VSW +++A+
Sbjct: 26 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 85
Query: 74 QEWEVDMC 81
+ D C
Sbjct: 86 KN---DQC 90
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI--DVYKMFEKMP 58
M V SC + + G + C+ + GF +N +VG +LI G D YK+F +M
Sbjct: 125 MVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMR 184
Query: 59 VRNVVSWTAIIAA 71
+NV +WTAI+AA
Sbjct: 185 DKNVFAWTAIVAA 197
Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C ++ G A G+ N++VG++LI KCG +F+ + V+++
Sbjct: 334 LTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDI 393
Query: 63 VSWTAIIAAFAQEWEV 78
++W II A V
Sbjct: 394 ITWNTIINGLAMHGHV 409
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 45 GENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GE K+FE+MPVRNV SW +I + +
Sbjct: 264 GEVESFVKLFEEMPVRNVYSWNGLIGGYVR 293
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSCGS + G Q +++ +++++ + LI KCG D K+F+ M +RNV
Sbjct: 250 LTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNV 309
Query: 63 VSWTAIIAAFA 73
VS+ A+I ++
Sbjct: 310 VSYNALIEGYS 320
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++GG Q +R G +V + LI F K G+ K+F+ M RNV+S
Sbjct: 151 ACSQLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVIS 210
Query: 65 WTAIIAAFAQ 74
WTA+IA + Q
Sbjct: 211 WTAMIAGYMQ 220
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L + G ++ GS+LI F KC +D +F+KM +++V W A++ + Q
Sbjct: 363 GKQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGYTQ 422
Query: 75 EWE 77
+ E
Sbjct: 423 QLE 425
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAA 71
Q AV+SGF NVYVG+SL+ K G NID ++ F+ + ++ V+WT II A
Sbjct: 62 QMHGFAVKSGFDRNVYVGTSLVDLYAK-GGNIDEARLVFDGLLEKSAVTWTTIITA 116
>gi|357484133|ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513688|gb|AES95311.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C I G Q A++SG+ +VY+GSS+I KCG + K+F++ N
Sbjct: 561 ISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAKCGNIEESEKVFDEQLKPNE 620
Query: 63 VSWTAIIAAFAQ 74
V++ AII+ +A
Sbjct: 621 VTFNAIISGYAH 632
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+++ ++ ++L+SF K +K+F+KMP RNVV+WT +I++
Sbjct: 79 YISQTHLANTLLSFYSKSSNFHYAHKLFDKMPNRNVVTWTTLISS 123
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L VR G + GSSL+ K G+++ D ++F + R+VV+W +I+ FA
Sbjct: 168 GLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFA 227
Query: 74 QEWEVDM 80
Q + M
Sbjct: 228 QNGDFRM 234
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G Q L +++G + +V S L++ GE DV K+F ++ +++
Sbjct: 357 LKACVEIEDLNTGVQVHGLMIKNGHQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDI 416
Query: 63 VSWTAIIAAFAQ 74
V+W ++I A A+
Sbjct: 417 VAWNSMILAQAR 428
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G Q L V+S + VG++L+ +C + D +K F + ++
Sbjct: 460 LKSCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHMYSECKQIDDAFKAFVDIVRKDD 519
Query: 63 VSWTAIIAAFAQ 74
SW++II Q
Sbjct: 520 SSWSSIIGTCKQ 531
>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
Length = 694
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R++ G L + G +V +G++L++ G+CG ++F +MP RNV
Sbjct: 119 LNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNV 178
Query: 63 VSWTAIIAA 71
VSW A++A+
Sbjct: 179 VSWNAMVAS 187
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G + SG + V ++L++F KCG +F + R+V
Sbjct: 462 LNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDV 521
Query: 63 VSWTAIIAAFAQ 74
VSW IIA FA
Sbjct: 522 VSWNGIIAGFAH 533
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++ + V ++L++ G+CG D ++F M R++VSW A+I+A+AQ
Sbjct: 245 LLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQ 292
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGG-TQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
++ C S +R G T ++C+ ++ ++ V +++++ GKCGE +FE R
Sbjct: 359 LSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHR 418
Query: 61 NVVSWTAIIAAFA 73
N+ SW ++I+A+A
Sbjct: 419 NLASWNSMISAYA 431
>gi|302807738|ref|XP_002985563.1| hypothetical protein SELMODRAFT_11063 [Selaginella moellendorffii]
gi|300146769|gb|EFJ13437.1| hypothetical protein SELMODRAFT_11063 [Selaginella moellendorffii]
Length = 299
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN- 61
+ +C S + G + SG +++ VGS++++F GKCG + + F++MP +N
Sbjct: 79 LAACSSGGELAAGRKIAARVEASGLDSDLIVGSAIVNFYGKCGRLDEAREAFDRMPAKNN 138
Query: 62 ---VVSWTAIIAAFAQ 74
VVSWT +IAA+ Q
Sbjct: 139 NVDVVSWTNMIAAYVQ 154
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD---MCY 82
++ VG+SL++ KC D +F++M R+V SWT ++ AFAQ ++ CY
Sbjct: 5 DLMVGNSLVNMYAKCRSLADAIAIFDRMKNRSVFSWTIMVTAFAQNGQLQRAIQCY 60
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
++ G L + GF ++VYV + LI F G CG K FE+MP R++VSW+++IA
Sbjct: 100 LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIAC 159
Query: 72 FAQ 74
FA+
Sbjct: 160 FAK 162
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
R+G V +G++L+ +CG + ++F++M RNV++WTA+I A
Sbjct: 214 RNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLA 263
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C S R +R G ++ +V+V ++LI KCG D ++F+ MP+RNV
Sbjct: 187 LSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNV 246
Query: 63 VSWTAIIAAFAQ 74
VSWT++I ++
Sbjct: 247 VSWTSLINGYSD 258
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG I G Q + GF V + ++L+S G E+ + ++F++MP R++
Sbjct: 86 IKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDL 145
Query: 63 VSWTAIIAAFAQ 74
V W A+IAA+A
Sbjct: 146 VMWNALIAAYAH 157
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG + G Q C +++SGF+ +V VG+SL+ K + D +F++M ++NVVSW
Sbjct: 114 CGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSW 173
Query: 66 TAIIAAFAQ 74
T++++ +A+
Sbjct: 174 TSLLSGYAR 182
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTR-NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C S+ + G Q AV+SG + V S+L++ K G K+F + R+
Sbjct: 512 INACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD 571
Query: 62 VVSWTAIIAAFAQ 74
+VSW ++I + Q
Sbjct: 572 IVSWNSMITGYGQ 584
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
I GG Q + V++GF +V ++LI K D +F+ M VR+ V+W +I
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGG 280
Query: 72 FA 73
+A
Sbjct: 281 YA 282
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRNVVS 64
C R + Q C V++G+ + ++L+ KC + +K+F NVV+
Sbjct: 316 CSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVT 375
Query: 65 WTAIIAAFAQ 74
WTA+I F Q
Sbjct: 376 WTAMIGGFVQ 385
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C NI G +V+SG + +V+V S+LI K G+ ++FEKM RNV
Sbjct: 131 LKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNV 190
Query: 63 VSWTAIIAAFAQ 74
VSWTAIIA
Sbjct: 191 VSWTAIIAGLVH 202
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CGS + G Q + G V S++IS KCG + K+F M + ++
Sbjct: 434 LSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDI 493
Query: 63 VSWTAIIAAFAQ 74
+SWTA+I +A+
Sbjct: 494 ISWTAMINGYAE 505
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G ++ GF + +V ++L + KCG+ V ++FEKM + +VVSWT +I+ + Q
Sbjct: 244 GKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQ 303
Query: 75 EWE 77
E
Sbjct: 304 MGE 306
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + + G Q +R G V + V +S+I+ KCG +F + +++
Sbjct: 333 ISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDI 392
Query: 63 VSWTAIIAAFAQ 74
+SW+ II+ ++Q
Sbjct: 393 ISWSTIISVYSQ 404
>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G Q +++G V NV+VGSSLI KCG K+F M N+V+
Sbjct: 485 ACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVA 544
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 545 WNSMISCYSR 554
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + N G Q C V+ G + YV +SL+S KCG + +F + + +
Sbjct: 281 ACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEI 340
Query: 65 WTAIIAAFAQ 74
W A++AA+A+
Sbjct: 341 WNAMVAAYAE 350
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G + +A+R+GF + V+V ++L+ CG +K+FE M RN+V+W ++I
Sbjct: 155 DVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVIN 214
Query: 71 AFA 73
+A
Sbjct: 215 GYA 217
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + V+ G N++ G++L+ KCG +K+F++M ++V
Sbjct: 248 LSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSV 307
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 308 VSWTSLIVGLA 318
>gi|302790445|ref|XP_002976990.1| hypothetical protein SELMODRAFT_105776 [Selaginella moellendorffii]
gi|300155468|gb|EFJ22100.1| hypothetical protein SELMODRAFT_105776 [Selaginella moellendorffii]
Length = 284
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 3 VTSCGSTRNIRGGTQYQCLA---------VRSGFVANVYVGSSLISFCGKCGENIDVYKM 53
+ +C + +I G +CL V SG + +V S+LI GKCG +D +
Sbjct: 62 LKACANLASIERGKSTECLEIGRRIHSQLVESGLELHTFVASTLIDTYGKCGSMVDARSV 121
Query: 54 FEKMPVRNVVSWTAIIAAFAQ 74
F++M ++VVSW+++I +A+
Sbjct: 122 FDRMKTQDVVSWSSMILGYAE 142
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G + +A+R+GF + V+V ++L+ CG +K+FE M RN+V+W ++I
Sbjct: 10 DVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVIN 69
Query: 71 AFA 73
+A
Sbjct: 70 GYA 72
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + V+ G N++ G++L+ KCG +K+F++M ++V
Sbjct: 103 LSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSV 162
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 163 VSWTSLIVGLA 173
>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
Length = 913
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + +R+ ++V VGS+L+ KCG + FE MP+RNV
Sbjct: 547 LSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNV 606
Query: 63 VSWTAIIAAFAQE 75
SW ++I+ +A+
Sbjct: 607 YSWNSMISGYARH 619
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
+ +++ GFV N+++ ++LI+ + G+ K+F++M RN+V+W +I+ + Q
Sbjct: 120 ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 179
Query: 77 EVD 79
+ D
Sbjct: 180 KPD 182
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 13 RGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
R G + +R+G N V +G+ L++ K G D +FE M ++ VSW ++I+
Sbjct: 321 RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 380
Query: 72 FAQ 74
Q
Sbjct: 381 LDQ 383
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRNVVSWTAIIAAF 72
Q L ++ + +G++L+S GKCGE + K+F +M R+ VSW ++I+ +
Sbjct: 459 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGY 515
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L ++ + ++V V + LIS G C ++ D +F+ + +RN +SW +II+ ++
Sbjct: 221 GVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYS 280
Query: 74 QEWEVDMCYTF 84
+ + Y
Sbjct: 281 RRGDAVSAYDL 291
>gi|414885414|tpg|DAA61428.1| TPA: hypothetical protein ZEAMMB73_429908 [Zea mays]
Length = 817
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L ++ GF+ V V S+L + +C + D YK+FE+M ++ VSWT++IA FA
Sbjct: 393 GRQLHPLVIKDGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIAGFA 451
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G + +R +V+VG+S+++ KCG+ F +MP+RNV
Sbjct: 182 LSACAAGEELGVGRAVHGMVLRRDSEYDVFVGTSIVNMYVKCGQMGAAMNEFWRMPIRNV 241
Query: 63 VSWTAIIAAFAQEWE 77
VSWT IA F Q+ +
Sbjct: 242 VSWTTAIAGFVQQED 256
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G +++G V+V SSL GKCG D K+F+++P RNVV+
Sbjct: 171 ACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA 230
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 231 WNALMVGYVQ 240
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T N++ G + QC R +++ + S+ + KCG +D K+F+ +++
Sbjct: 371 MSAAARTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDL 430
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+A+
Sbjct: 431 ILWNTLLAAYAE 442
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC + +F K+ VRNV
Sbjct: 69 CVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVF 128
Query: 64 SWTAIIA 70
SW AII
Sbjct: 129 SWAAIIG 135
Score = 38.5 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 3 VTSC-GSTRNIRG---GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
V++C ++ N+ G GTQ +A+ +G + +G+SL++F K G +F++M
Sbjct: 266 VSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMF 325
Query: 59 VRNVVSWTAIIAAFAQE 75
++VV+W +I+ + Q+
Sbjct: 326 EKDVVTWNLLISGYVQQ 342
>gi|242039301|ref|XP_002467045.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
gi|241920899|gb|EER94043.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
Length = 564
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
GTQ C+ R GF ++V S+L KCG + ++F++MP R+ V+WT +I +A+
Sbjct: 138 GTQLHCIGTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAK 197
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + G Q +++ +++ +VGS+L+ GKCG ++F ++ +
Sbjct: 330 IKGCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSLQLFNEIGYHSE 389
Query: 63 VSWTAIIAAFAQ 74
V+W A+I +AQ
Sbjct: 390 VAWNAVINVYAQ 401
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
SCG T +IR G + +G A + ++ + LI+ C + ++F +P N V
Sbjct: 26 SCGRTGDIRRGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAVRVFGVLPRPNPV 85
Query: 64 SWTAIIAAFAQ 74
SWT +++ Q
Sbjct: 86 SWTTLVSGLVQ 96
>gi|242034187|ref|XP_002464488.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
gi|241918342|gb|EER91486.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
Length = 701
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
R G + C A+++G +N+Y+ S L+ GK G+ +F+K+ +NVV+W +++AA+
Sbjct: 247 RLGKEVHCYALKNGLASNIYISSKLVDLYGKIGDMTSAANVFQKIGNKNVVTWNSLMAAY 306
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + G Q +R G NVYVG+SLI+ +CGE D +F + +NV
Sbjct: 53 ACAGLQALGIGKQLHSYVLRCGIKINVYVGASLIALYSECGEFDDARVVFSTIQEKNVNV 112
Query: 65 WTAIIAAFAQEWEVDMCY 82
W ++ ++ +E +D +
Sbjct: 113 WNELVQSYIREGSMDKAW 130
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG+ I+ G Q+ L + GF ++VG+SLI+ KCG D + +FE+MP ++
Sbjct: 694 LSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYE-DGFCVFEEMPEHDL 752
Query: 63 VSWTAIIAAFAQ 74
++W A++ AQ
Sbjct: 753 ITWNAVLVGCAQ 764
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG----------------- 45
+++C + ++ G LA+++G N YV + LIS KCG
Sbjct: 562 LSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDT 621
Query: 46 -----------ENI---DVYKMFEKMPVRNVVSWTAIIAAFAQ 74
EN D +FEKMP R+VVSWTAII+A+ Q
Sbjct: 622 VSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQ 664
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+A+++G+ +V VGS++++ + G FE MP RN SWT +IAAFAQ
Sbjct: 386 IAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQ 439
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
NV +++I+ + G + +F+KMPV+N SW A+IA F Q E
Sbjct: 488 NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEE 535
>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g15720-like [Vitis vinifera]
Length = 606
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C ++R G + G N+ V SSLI GKC D ++F+ M RNV
Sbjct: 135 VNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNV 194
Query: 63 VSWTAIIAAFAQ 74
VSWT++I A+ Q
Sbjct: 195 VSWTSMITAYGQ 206
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G +R G +N V S+L+ KCG K+F ++P +V
Sbjct: 237 INACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSV 296
Query: 63 VSWTAIIAAFAQ 74
+ +T++I A+
Sbjct: 297 IPYTSMIVGAAK 308
>gi|293337115|ref|NP_001168043.1| uncharacterized protein LOC100381772 precursor [Zea mays]
gi|223945665|gb|ACN26916.1| unknown [Zea mays]
gi|224028321|gb|ACN33236.1| unknown [Zea mays]
Length = 780
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L ++ GF+ V V S+L + +C + D YK+FE+M ++ VSWT++IA FA
Sbjct: 356 GRQLHPLVIKDGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIAGFA 414
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G + +R +V+VG+S+++ KCG+ F +MP+RNV
Sbjct: 145 LSACAAGEELGVGRAVHGMVLRRDSEYDVFVGTSIVNMYVKCGQMGAAMNEFWRMPIRNV 204
Query: 63 VSWTAIIAAFAQEWE 77
VSWT IA F Q+ +
Sbjct: 205 VSWTTAIAGFVQQED 219
>gi|302767404|ref|XP_002967122.1| hypothetical protein SELMODRAFT_31963 [Selaginella moellendorffii]
gi|300165113|gb|EFJ31721.1| hypothetical protein SELMODRAFT_31963 [Selaginella moellendorffii]
Length = 482
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
SCG + G VR GF+ +V VG++L+S +CG+ +MF +P++N V
Sbjct: 57 SCGGPEALGTGKIIGECIVREGFLERDVVVGNALLSMYERCGDTGQAVRMFHALPLKNTV 116
Query: 64 SWTAIIAAFAQ 74
SWT+II A A+
Sbjct: 117 SWTSIIRAVAK 127
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CG + + G + + +G +V VG+SLI+ K G+ + +F M ++VV
Sbjct: 295 ACGVLGDYKTGREIHEQIINTGLDHYDVGVGNSLINMYAKFGDLDEAALVFRLMEKQDVV 354
Query: 64 SWTAIIAAFAQEWEVDMCYTF 84
SW +++ FAQ D C+
Sbjct: 355 SWNSLLGCFAQASGGDSCFAL 375
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 52 KMFEKMPVRNVVSWTAIIAAFAQ 74
++FE M VRN+ SWTAI+AA+AQ
Sbjct: 3 QVFEDMEVRNLFSWTAIVAAYAQ 25
>gi|255542982|ref|XP_002512554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548515|gb|EEF50006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CGS ++ G Q VRS F +VYV S LI+ KCG+ + ++F++ +++
Sbjct: 338 LSVCGSLASLDYGRQVHTQLVRSQFDFDVYVSSVLITMYIKCGDLVKAKRVFDRFSMKDT 397
Query: 63 VSWTAIIAAFAQE 75
V W +II +AQ
Sbjct: 398 VMWNSIITGYAQH 410
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+ LIS K G + ++F+KMP RNVVSWTA++ + QE
Sbjct: 83 NGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQE 123
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 49 DVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81
+ ++F++MP RNVV+WT +I+ +A +VD+
Sbjct: 190 EAREIFDEMPKRNVVAWTTMISGYAMNNKVDVA 222
>gi|410110029|gb|AFV61094.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
origanoides]
Length = 363
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + G Q L V+SGF N YV S+LI KCG D + FE V+
Sbjct: 270 SCSDLATLHLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWGSFESSHKETSVT 329
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 330 WNSIIFAYAQ 339
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ ++ C V
Sbjct: 1 AKCRRVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVALFV 45
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ S I G Q ++SG N V ++LIS +CG +++FE M RNV
Sbjct: 484 LSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNV 543
Query: 63 VSWTAIIAAFAQ 74
+SWT+II FA+
Sbjct: 544 ISWTSIITGFAK 555
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRNV 62
+C + + G +++G++ ++V VG LI F G+ + +K+FEKMP RN
Sbjct: 177 ACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236
Query: 63 VSWTAIIAAFAQ 74
V+WT +I Q
Sbjct: 237 VTWTLMITRLMQ 248
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPV 59
+++C + + G Q A+R G + VG LI+ KC G K+F+++
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337
Query: 60 RNVVSWTAIIAAFAQE 75
NV SWTA+I + Q+
Sbjct: 338 HNVFSWTAMITGYVQK 353
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q AV+ GF + V +SLIS + G D K F+ + +N+
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442
Query: 63 VSWTAIIAAFAQ 74
+S+ +I A+A+
Sbjct: 443 ISYNTVIDAYAK 454
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ S I G Q ++SG N V ++LIS +CG +++FE M RNV
Sbjct: 484 LSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNV 543
Query: 63 VSWTAIIAAFAQ 74
+SWT+II FA+
Sbjct: 544 ISWTSIITGFAK 555
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLIS-FCGKCGENIDVYKMFEKMPVRNV 62
+C + + G V++G++ ++V VG LI F G+ + +K+FEKMP RN
Sbjct: 177 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236
Query: 63 VSWTAIIAAFAQ 74
V+WT +I Q
Sbjct: 237 VTWTLMITRLMQ 248
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPV 59
+++C + + G Q A+R G + VG LI+ KC G K+F+++
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337
Query: 60 RNVVSWTAIIAAFAQE 75
NV SWTA+I + Q+
Sbjct: 338 HNVFSWTAMITGYVQK 353
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q AV+ GF + V +SLIS + G D K F+ + +N+
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442
Query: 63 VSWTAIIAAFAQ 74
+S+ +I A+A+
Sbjct: 443 ISYNTVIDAYAK 454
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q C V+ GF +VYV + LI G CG K+F++MP R++
Sbjct: 215 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 274
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++I A + E D
Sbjct: 275 VSWNSMIDALVRFGEYD 291
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVV 63
+ GS + GT LAV++G ++YV ++ I F G CG+ + K+F+++P VR+VV
Sbjct: 141 AAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVV 200
Query: 64 SWTAIIAAFAQ 74
+W A++A + +
Sbjct: 201 TWNAVLAGYVR 211
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
R G +V +G++LI KCG ++F+ MP R+V +W ++I A
Sbjct: 293 RVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLA 342
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVV 63
+ GS + GT LAV++G ++YV ++ I F G CG+ + K+F+++P VR+VV
Sbjct: 141 AAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVV 200
Query: 64 SWTAIIAAFAQ 74
+W A++A + +
Sbjct: 201 TWNAVLAGYVR 211
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
R G +V +G++LI KCG ++F+ MP R+V +W ++I A
Sbjct: 293 RVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLA 342
>gi|410110049|gb|AFV61104.1| pentatricopeptide repeat-containing protein 81, partial [Phyla
nodiflora]
Length = 346
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L ++SGF N YV S+LI KCG D ++ FE V+
Sbjct: 258 SCSDLATLQLGRQIHVLVIKSGFENNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 317
Query: 65 WTAIIAAFAQ 74
W +I+ A+AQ
Sbjct: 318 WNSIVFAYAQ 327
>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
Length = 834
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG ++ G Q LAV++G +V GS+L+ GKC D F M RN
Sbjct: 170 LKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNS 229
Query: 63 VSWTAIIAAFAQ 74
VSW A+IA Q
Sbjct: 230 VSWGAVIAGCVQ 241
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTF 84
SGFV ++V + L+ +CG + +F+ MP R+ VSW ++ A+A + M +
Sbjct: 60 SGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSL 119
Query: 85 I 85
+
Sbjct: 120 L 120
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + I G Q ++ + + ++ S+L+ KCG D MFEK+ + VS
Sbjct: 542 SCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVS 601
Query: 65 WTAIIAAFA 73
W A+I +A
Sbjct: 602 WNAMICGYA 610
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 20 CLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
C V+ GF +V V ++++ GKC ++ Y +F++M R+ VSW IIAA Q +
Sbjct: 356 CAEVK-GFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQ----N 410
Query: 80 MCY 82
CY
Sbjct: 411 ECY 413
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +++ G A++SG + +V S+++ KCG + K+ +++ + +
Sbjct: 439 LKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQEL 498
Query: 63 VSWTAIIAAFA 73
VSW +IIA F+
Sbjct: 499 VSWNSIIAGFS 509
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P+ S + R R G + +SGF +NV +G++LI KCG + K+F+ M +
Sbjct: 530 LPMCSLLAVR--RQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK 587
Query: 61 NVVSWTAIIAAFA 73
+VV+WTA+I+AF
Sbjct: 588 DVVTWTALISAFG 600
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G C ++ GF A + +G+SL+ KCGE D+ K+F M +++SW +IA
Sbjct: 437 DINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Query: 71 A 71
+
Sbjct: 497 S 497
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G A+ GF +++Y+G++LI + + + +FE+M R+
Sbjct: 128 INSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDS 187
Query: 63 VSWTAIIAAFAQE--WE--VDMCYTF 84
VSW ++I+ + WE +DM + F
Sbjct: 188 VSWNSLISGYCSNGFWEDALDMYHKF 213
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CGS ++ G + + G +V +G+ L+S K + ++F KM V++ V+
Sbjct: 231 ACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVT 290
Query: 65 WTAIIAAFAQ 74
W +I +AQ
Sbjct: 291 WNTMICGYAQ 300
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + +++ G + SGF + + LI KCG+ + ++F+ ++
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDS 388
Query: 63 VSWTAIIAAFAQ 74
V+W ++I + Q
Sbjct: 389 VTWNSLINGYTQ 400
>gi|410109969|gb|AFV61064.1| pentatricopeptide repeat-containing protein 81, partial [Aloysia
macrostachya]
Length = 385
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 277 SCSDLATLQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDAWESFESSHKETSVT 336
Query: 65 WTAIIAAFAQ 74
W ++I A+AQ
Sbjct: 337 WNSMIFAYAQ 346
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81
S+L KC + D +F+ M RN VSW A+I +A+ ++ C
Sbjct: 1 SALFDMYAKCRKVEDANYLFKYMQERNTVSWNALIGGYAEMGNLERC 47
>gi|225436126|ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 313
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +R G Q C V +G +++ ++LIS KCG+ K+F++M RN+
Sbjct: 115 LKSCSGLSALRLGRQVHCAVVANGLASDLATINALISMYSKCGDLAAARKVFDRMTERNL 174
Query: 63 VSWTAIIAAFA 73
V+W+A++A +
Sbjct: 175 VTWSAMMAGYG 185
>gi|383133842|gb|AFG47875.1| Pinus taeda anonymous locus 0_5528_01 genomic sequence
gi|383133843|gb|AFG47876.1| Pinus taeda anonymous locus 0_5528_01 genomic sequence
gi|383133847|gb|AFG47880.1| Pinus taeda anonymous locus 0_5528_01 genomic sequence
Length = 145
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + +R GF +V VG++L+ KCG +F+KMP RNV
Sbjct: 74 LAACADVAALQQGKRMHASVIRRGFEPDVSVGTALVDMYAKCGSVQIARILFDKMPERNV 133
Query: 63 VSWTAIIAAF 72
+SW ++I +
Sbjct: 134 ISWNSMIEGY 143
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + A + G +VYV S+L+ KCG + ++FE MP +N
Sbjct: 336 LSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRVFENMPHKNE 395
Query: 63 VSWTAIIAAFA 73
VSW A+I+A A
Sbjct: 396 VSWNAMISALA 406
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++ G + L N Y S+LI GKCG+ + ++F+ M +++V+
Sbjct: 237 ACGDLGDLALGKWVEALIGDKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVT 296
Query: 65 WTAIIAAFAQEWEVDMCYTF 84
W A+I +AQ D T
Sbjct: 297 WNAMITGYAQNGASDEAMTL 316
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC + + G L ++ GF + ++ SLI+ KC + K+F+++ R++VS
Sbjct: 136 SCANLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVS 195
Query: 65 WTAIIAAFAQ 74
W ++I+ + +
Sbjct: 196 WNSMISGYTK 205
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q +R GF +N+++ S+L+ KCG K+F++M V +
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE 409
Query: 63 VSWTAIIAAFA 73
VSWTAII A
Sbjct: 410 VSWTAIIMGHA 420
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + +R G ++VY+GSSL+ K D ++F ++ R+ +SW +++A + Q
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320
>gi|383133845|gb|AFG47878.1| Pinus taeda anonymous locus 0_5528_01 genomic sequence
gi|383133848|gb|AFG47881.1| Pinus taeda anonymous locus 0_5528_01 genomic sequence
gi|383133849|gb|AFG47882.1| Pinus taeda anonymous locus 0_5528_01 genomic sequence
Length = 145
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G + +R GF +V VG++L+ KCG +F+KMP RNV
Sbjct: 74 LAACADVAALQQGKRMHASVIRRGFEPDVSVGTALVDMYAKCGSVQIARILFDKMPERNV 133
Query: 63 VSWTAIIAAF 72
+SW ++I +
Sbjct: 134 ISWNSMIEGY 143
>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Glycine max]
Length = 775
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + + G Q ++ F + +GS+L + KCG D Y++F +MP R+V
Sbjct: 428 LKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDV 487
Query: 63 VSWTAIIAAFAQ 74
+SW A+I+ +Q
Sbjct: 488 ISWNAMISGLSQ 499
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+ + + R G Q LAV++ +V+ SSL++ K G + +F++MP RN V
Sbjct: 124 TAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAV 183
Query: 64 SWTAIIAAFAQEWEVDMCY 82
SW +I+ +A + D +
Sbjct: 184 SWATMISGYASQELADEAF 202
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
+ G Q LA+++G V V V ++L++ KCG D K FE +N ++W+A++
Sbjct: 235 VNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTG 294
Query: 72 FAQ 74
FAQ
Sbjct: 295 FAQ 297
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C I G Q +++ G+ +YV S+L+ KCG +D K FE + +V
Sbjct: 327 INACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDV 386
Query: 63 VSWTAIIAAFAQ 74
V WT+II + Q
Sbjct: 387 VLWTSIITGYVQ 398
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + +R G + +G ++ + +SLI+ KC +F+ + ++VVSW
Sbjct: 20 CTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSW 79
Query: 66 TAIIAAFAQE 75
+I AF+Q+
Sbjct: 80 NCLINAFSQQ 89
>gi|302801784|ref|XP_002982648.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
gi|300149747|gb|EFJ16401.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
Length = 481
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +CG +++ G VR+G V ++L+S GKCG + K+F+ + N+
Sbjct: 275 VGACGDMQSLAEGRPVHDRIVRAGLENGALVSTALVSMYGKCGSLDEARKIFDGSDLSNL 334
Query: 63 VSWTAIIAAFAQEWE 77
VSW A+I A+AQ E
Sbjct: 335 VSWNAMIVAYAQNGE 349
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 38/71 (53%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G +G+V + + S++++ KC ++F++M ++ V+
Sbjct: 144 ACSELESLTDGQALHARITATGYVGDAVLDSAVVNMYTKCKSLERARRVFDRMQLKTEVT 203
Query: 65 WTAIIAAFAQE 75
WT +I+A+AQ+
Sbjct: 204 WTTLISAYAQQ 214
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 30/42 (71%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+G+++++ GK G ++ ++F+++ RN+++W ++ A+AQ
Sbjct: 71 LGTAIVTMYGKSGNLVEASQVFDRLSSRNIITWNTLMGAYAQ 112
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G Q LAV++G N YV ++LIS GKC V ++F +M V++ VS
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486
Query: 65 WTAIIAAFAQ 74
W + IAA Q
Sbjct: 487 WNSFIAALVQ 496
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ CG + + G Q +A++ G + + V ++L+S KCG D +K+F+ M R++
Sbjct: 557 LSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDI 615
Query: 63 VSWTAIIAAFAQ 74
+W I AQ
Sbjct: 616 FTWNTFITGCAQ 627
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
NV + L+S + G +D ++F+ MP RN V+W A+++ + Q ++ M
Sbjct: 93 GNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITM 144
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
L +++GF ++V +G+S+++ + +D+ K F+ M RN +W+ +IAA + +D
Sbjct: 248 LVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRID 307
>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Glycine max]
Length = 506
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + A++ + +VG+SLISF KCG D MF+K+ RN+VSW A+I +AQ
Sbjct: 232 GKSFHACAIKFLGKVDQFVGNSLISFYAKCGSMEDSLLMFDKLFKRNIVSWNAMICGYAQ 291
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 31/103 (30%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISF---------------------- 40
+ S + N+ G Q A++ G +V+VGSSL+
Sbjct: 88 INSSAALGNVVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTIEDAQKAFGDTQHPNV 147
Query: 41 -------CG--KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
CG K G D ++F +MP RNVVSW A++ +Q
Sbjct: 148 VSYTTLICGYLKRGRFEDALRVFHEMPERNVVSWNAMVGGCSQ 190
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CG + G + A G +N+ V ++ + C KCG+ +F++MP RNV
Sbjct: 243 LSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNV 302
Query: 63 VSWTAIIAAFA 73
+SW+ +I +A
Sbjct: 303 ISWSTVIGGYA 313
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L VR GF +V GS+L+ KC D K+F ++PV+N V W+AIIA Q
Sbjct: 195 GIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQ 254
Query: 75 EWE 77
E
Sbjct: 255 NDE 257
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C +++ G Q + SGF+ +VY+ + L+ +C YK+FEKM R+V
Sbjct: 50 IQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDV 109
Query: 63 VSWTAIIAAFAQEWEVDMCYTF 84
+S+ +I+ +A E+++ F
Sbjct: 110 ISYNTMISGYADAGEMNLANEF 131
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G Q L+V+S +N+ V +S++ GKC + MF++M R+ V
Sbjct: 386 SACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAV 445
Query: 64 SWTAIIAAFAQ 74
SW A+IAA Q
Sbjct: 446 SWNAVIAAHEQ 456
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G Q ++ ++VY+ S+L+ KCG D +FEK P ++ V+
Sbjct: 589 ACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVT 648
Query: 65 WTAIIAAFAQ 74
W A+I +AQ
Sbjct: 649 WNAMICGYAQ 658
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + + G + ++SG + +VG +LI KCG + K+ +++ + +
Sbjct: 486 LKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTM 545
Query: 63 VSWTAIIAAF 72
VSW AIIA F
Sbjct: 546 VSWNAIIAGF 555
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ GTQ A++ F +++ VG++ + KCG D ++F +P ++
Sbjct: 286 SCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQC 345
Query: 65 WTAII 69
+ AII
Sbjct: 346 YNAII 350
>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
Length = 653
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SC S +R G + GF +V +G++L++ KCG D K F+ + ++V
Sbjct: 287 VDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDV 346
Query: 63 VSWTAIIAAFAQ 74
VSW+A+IAA AQ
Sbjct: 347 VSWSAMIAASAQ 358
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRN 61
+ +C ++ G Q A GF +V V +SLI KCG + +F M +R+
Sbjct: 55 LAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRD 114
Query: 62 VVSWTAIIAAF 72
++S TA+I A+
Sbjct: 115 IISVTAMIGAY 125
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella
moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella
moellendorffii]
Length = 941
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + + G Q + SG A+V + +SL+ GKCG + F++MP R++
Sbjct: 17 VSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDL 76
Query: 63 VSWTAIIAAFAQ 74
+SW A+I +AQ
Sbjct: 77 ISWNAMITVYAQ 88
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S R + G V SG +V+VG++++SF GKC D ++F+++ +++V
Sbjct: 632 ACASLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVC 691
Query: 65 WTAIIAAFAQ 74
W A+I A+AQ
Sbjct: 692 WNAMIGAYAQ 701
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVV 63
SC ST + G+ A G++++ V ++LI+ KC N++ + FE + +NVV
Sbjct: 733 SCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVASKNVV 792
Query: 64 SWTAIIAAFAQEWEVD 79
SW++I+AA+A+ E D
Sbjct: 793 SWSSIVAAYARNGEED 808
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID-VYKMFEKMPVRNVV 63
+C S + G LA+ SG ++ + +SLIS GKC + D ++F ++ +V+
Sbjct: 221 TCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVI 280
Query: 64 SWTAIIAAFAQEWE 77
SW+A IAA+ Q WE
Sbjct: 281 SWSAFIAAYGQHWE 294
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+++++ G Q + +G + Y+G+ L+ G+CG D F+ + RNV SWT
Sbjct: 432 GNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWT 491
Query: 67 AIIAAFAQEWE 77
+I+ Q E
Sbjct: 492 ILISLLVQNGE 502
Score = 41.6 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + L + + N V ++ S KC D ++F +P ++ VS
Sbjct: 320 ACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVS 379
Query: 65 WTAIIAAFAQE 75
W AI++A+A++
Sbjct: 380 WNAIVSAYAKQ 390
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVV 63
+C T ++ G G +++ ++L++ C E++D ++ FE+M R+VV
Sbjct: 531 ACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTC-ESLDEARLVFERMVFRDVV 589
Query: 64 SWTAIIAAFAQ 74
SWT II+A+A
Sbjct: 590 SWTIIISAYAH 600
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ +++ G + + FV++ V + LIS CG D +FE +V
Sbjct: 118 LNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDV 177
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
+WT +IAA+ + +++ +
Sbjct: 178 CTWTTVIAAYTRHGKLECAF 197
>gi|224146493|ref|XP_002326026.1| predicted protein [Populus trichocarpa]
gi|222862901|gb|EEF00408.1| predicted protein [Populus trichocarpa]
Length = 737
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
SC S ++ G Q LA+++G F ++V+VG++L+ G+CG + + +FE MP +++V
Sbjct: 122 SCASM-DVGRGIMLQALAIKNGLFCSDVFVGTALLGLFGRCGWLDEAFHVFEDMPDKSLV 180
Query: 64 SWTAIIAAFAQEWEVDMC 81
+W ++I+ V+ C
Sbjct: 181 TWNSMISLLGHHGFVEDC 198
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC S G V++ +VY+GS+L+ + KCG+ + + F ++ +NV
Sbjct: 322 INSCTSLLVPMCGEYVHGKIVKTALETDVYLGSALVDYYAKCGKLDNAHYCFREIHQKNV 381
Query: 63 VSWTAIIAAFAQE 75
VSW ++I +A +
Sbjct: 382 VSWNSLILGYANK 394
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++SG V V +SLI+ + V K+FE++ R+VV+W II+AF++
Sbjct: 233 GGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMSQVEKLFEEVDGRDVVTWNTIISAFSK 292
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 6 CGSTR--NIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
C S++ N+ G+ L +++ F ++ V + LI GKCG K+F+ M RN+
Sbjct: 552 CVSSKVCNLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESSAKIFDSMTERNL 611
Query: 63 VSWTAIIAAFA 73
++WTA+I+A
Sbjct: 612 ITWTALISALG 622
>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
Length = 607
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G V+SG V+V SSL GKCG D K+F+++P RNVV+
Sbjct: 176 ACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVA 235
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 236 WNALMVGYVQ 245
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 42/72 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T+N++ G + QC +R +++ + S+ I KCG +D K F+ + +++
Sbjct: 376 MSAAARTQNLKLGKEVQCYCIRHSLESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDL 435
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+A+
Sbjct: 436 ILWNTLLAAYAE 447
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ C R++ G Q +++G + N Y+ + L+ F KC +F K+ VR
Sbjct: 71 LQGCVYERDLCTGKQIHARILKNGDFYARNEYIETKLVIFYSKCDSFEVAEVLFSKLRVR 130
Query: 61 NVVSWTAIIA 70
NV SW AII
Sbjct: 131 NVYSWAAIIG 140
>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
Length = 673
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCL---AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
V + G+ ++R + L A+R G ++ VGS+L+S GKCG +F++M
Sbjct: 220 VHALGAALSLRSAGDTKLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMER 279
Query: 60 RNVVSWTAIIAAFAQ 74
RNVVSW+ +IAA A+
Sbjct: 280 RNVVSWSGLIAALAE 294
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ST I G + GF A V ++L++ GKCG +F+ M RNVVS
Sbjct: 326 ACASTGAIAEGRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVS 385
Query: 65 WTAIIAAFAQ 74
WTA++A +A
Sbjct: 386 WTAMLAGYAH 395
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ Q V +GF A+V V ++LIS +CG+ + F+++P +NVVSW ++IAA +
Sbjct: 34 EIQFRVVATGFDADVTVATALISALARCGDLEGAREAFDRIPAKNVVSWNSMIAALNE 91
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC R++ G GF V+VG++L++ KC + FE++ ++VVS
Sbjct: 123 SCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVS 182
Query: 65 WTAIIAAFAQ 74
W ++IAA +Q
Sbjct: 183 WNSMIAAHSQ 192
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C + + GF ++ Y+ ++L++ CG + K+F+KM ++VVSW +I A+AQ
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 215
Query: 75 EWEV 78
W++
Sbjct: 216 -WDL 218
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+V +G++L+ KCG ++F++MP ++V++WTA+I A
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLA 416
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C N + GTQ +A+R G+ +V GS+L+ KC + + +F MP +N +SW
Sbjct: 191 CSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISW 250
Query: 66 TAIIAAFAQ 74
+AIIA Q
Sbjct: 251 SAIIAGCVQ 259
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + + + G Q LA +S F N+ V ++ I GKC + ++F++M ++ VS
Sbjct: 392 ACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVS 451
Query: 65 WTAIIAAFAQEWE 77
W AIIAA Q E
Sbjct: 452 WNAIIAAHEQNEE 464
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + +I G Q ++ +VY+ S+L+ KCG D MFEK P+R+ V+
Sbjct: 620 TCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVT 679
Query: 65 WTAIIAAFAQ 74
W A+I +A
Sbjct: 680 WNAMICGYAH 689
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C R G Q + SGF V+V + L+ CG K+F+ MP+R+VVSW
Sbjct: 59 CAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSW 118
Query: 66 TAIIAAFA 73
A+I +A
Sbjct: 119 NAMIFGYA 126
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC + ++R GTQ A++S FV + V ++ + KC D ++F+ N+
Sbjct: 289 LKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNL 348
Query: 63 VSWTAIIAAFAQE 75
S+ A+I ++Q+
Sbjct: 349 QSYNAMITGYSQK 361
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + N+R G ++ G N++VG+ LI+ GKCG + ++F++M ++V
Sbjct: 126 LKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDV 185
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +++A +A D
Sbjct: 186 VSWNSMVAGYAHNMRFD 202
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G + + N+ + +SLI +CG D ++F++M R+V S
Sbjct: 297 ACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVAS 356
Query: 65 WTAIIAAFA 73
WT++I+A+
Sbjct: 357 WTSLISAYG 365
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q +R+G+ +VG++L++ KCG D FE+M R+V
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDV 449
Query: 63 VSWTAIIAAFAQ 74
VSW +IA +A+
Sbjct: 450 VSWNTMIAGYAR 461
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
V +V+ ++++S + G + ++F+ MP RN VSW A++AA+ Q +D
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMD 303
Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 37 LISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++S + G+ ++ ++F+ PVR+V +WTA+++ +AQ
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 267
>gi|410110057|gb|AFV61108.1| pentatricopeptide repeat-containing protein 81, partial
[Xeroaloysia ovatifolia]
Length = 391
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE V+
Sbjct: 273 SCSDLATLQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDARESFESSHKETSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V + + R++R G Q C A++ G ++++V ++LI G+CG K+F++MP N+
Sbjct: 280 VKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNL 339
Query: 63 VSWTAIIAA 71
V+W A++ A
Sbjct: 340 VAWNAVVTA 348
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +R G Q QC A +SGF +G+S I + G + F++M +V
Sbjct: 432 MNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDV 491
Query: 63 VSWTAIIAAFAQ 74
VSW+AII++ AQ
Sbjct: 492 VSWSAIISSHAQ 503
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G LAV G V+V +SL+S +CG+ + ++F+ R+ VSW
Sbjct: 124 CSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSW 183
Query: 66 TAIIAAF 72
++++ +
Sbjct: 184 NSLVSGY 190
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLIS--FCGKCGENIDVYKMFEKMPVR 60
+ +C +I G Q ++ F + ++GS+LI F C E D ++ F +P +
Sbjct: 331 IRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACME--DGFRCFRSVPKQ 388
Query: 61 NVVSWTAIIAAFAQ 74
+VV+WTA+I+ Q
Sbjct: 389 DVVTWTAMISGCVQ 402
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
MP +C + G Q R+GF N+++ SSL+ KCG ++F++M +R
Sbjct: 408 MP--ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR 465
Query: 61 NVVSWTAIIAAFA 73
++VSWTA+I A
Sbjct: 466 DMVSWTAMIMGCA 478
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G + ++R G A VYV SSLI KC +D Y++F + R+ +SW +IIA
Sbjct: 315 DISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIA 374
Query: 71 AFAQ 74
Q
Sbjct: 375 GCVQ 378
>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
Length = 720
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C + + G Q+ LA++S +N + V ++L++ KCG D K+F++MP N
Sbjct: 351 ISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHN 410
Query: 62 VVSWTAIIAAFAQ 74
V+ +IIA +AQ
Sbjct: 411 TVTLNSIIAGYAQ 423
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+T+ ++ GG Q+ A+++GF N +VGS LI KCG + + K+FE++ +
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSD 307
Query: 62 VVSWTAIIAAFAQEWEVDM 80
+V W +I+ ++Q E+ +
Sbjct: 308 LVVWNTMISGYSQNKELSV 326
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q +R+G+ +VG++L++ KCG D FE+M R+V
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDV 449
Query: 63 VSWTAIIAAFAQ 74
VSW +IA +A+
Sbjct: 450 VSWNTMIAGYAR 461
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
V +V+ ++++S + G + ++F+ MP RN VSW A++AA+ Q +D
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMD 303
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 37 LISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++S + G+ ++ ++F+ PVR+V +WTA+++ +AQ
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 267
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G Q +R+G+ +VG++L++ KCG D FE+M R+V
Sbjct: 390 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDV 449
Query: 63 VSWTAIIAAFAQ 74
VSW +IA +A+
Sbjct: 450 VSWNTMIAGYAR 461
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
V +V+ ++++S + G + ++F+ MP RN VSW A++AA+ Q +D
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMD 303
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 37 LISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++S + G+ ++ ++F+ PVR+V +WTA+++ +AQ
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 267
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ + +I+ G Q AV++G + V ++LIS GKCG D +F +M +RN
Sbjct: 555 ISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE 614
Query: 63 VSWTAIIAAFAQ 74
VSW II + +Q
Sbjct: 615 VSWNTIITSCSQ 626
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C T I G Q L++++GF +++YV LI K K+ E + R+VVS
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS 414
Query: 65 WTAIIAAFAQEWEVDMC 81
WT++IA + Q D C
Sbjct: 415 WTSMIAGYVQH---DFC 428
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 40/71 (56%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C + +R G Q SG+ A++ + ++L++ +CG + + + +F ++ ++ +
Sbjct: 455 SACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEI 514
Query: 64 SWTAIIAAFAQ 74
+W +I+ F Q
Sbjct: 515 TWNGLISGFGQ 525
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
L +R G ++YV +SLI GKCGE D K+F+ M +R+V SW A++A + + +D
Sbjct: 159 LILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCID 217
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PVRNV 62
+C + G Q LA R G +N V +L + KCG +D F+K+ +N+
Sbjct: 277 ACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNL 336
Query: 63 VSWTAIIAAFA 73
++W +I A+A
Sbjct: 337 IAWNTMITAYA 347
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 45/79 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G + + SGF+ + ++ S+L+ GKCG ++FE+MP + V
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTV 273
Query: 63 VSWTAIIAAFAQEWEVDMC 81
V+W ++I+ + + ++ C
Sbjct: 274 VAWNSMISGYGLKGDIISC 292
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 5 SCGST-RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+CG R + G + CL +++G + ++ VGSSL+ GKC +F +MP ++V
Sbjct: 115 ACGGLHRYVLGKMIHTCL-IKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVA 173
Query: 64 SWTAIIAAFAQ 74
W +I+ + Q
Sbjct: 174 CWNTVISCYYQ 184
Score = 42.4 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C + G + L + N V +L+ KCG + + +F+ +P R++
Sbjct: 416 LTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475
Query: 63 VSWTAIIAAFA 73
VSWT++I A+
Sbjct: 476 VSWTSMITAYG 486
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C + + G +R+ +V+V SSL+ KCG+ K+F+ +P V
Sbjct: 315 IMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKV 374
Query: 63 VSWTAIIAAFAQE 75
VSW +I+ + E
Sbjct: 375 VSWNVMISGYVAE 387
>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Glycine max]
Length = 630
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V+ C ++ G VR GFV ++ V +SL++ KCGE K+F++M VR++
Sbjct: 168 VSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDL 227
Query: 63 VSWTAIIAAFAQ 74
++W A+I+ +AQ
Sbjct: 228 ITWNAMISGYAQ 239
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C ++ + G LA++S F + ++L+ KCG+ ++FEKM RNV
Sbjct: 258 LVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 317
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT++IA + ++ D
Sbjct: 318 VSWTSMIAGYTRDGRSD 334
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + +R+G+ ++ +V ++L+ KCG +F+ +P +++VS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500
Query: 65 WTAIIAAFA 73
WT +IA +
Sbjct: 501 WTVMIAGYG 509
>gi|359497691|ref|XP_003635608.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 317
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S +++ G + L ++SG+ +++ + ++LI+ KCG +D F ++ +V
Sbjct: 33 LTACSSLASLQEGRKTHVLVLKSGYESHISICNALITMYCKCGSILDSELAFRQIDHPDV 92
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAAFA+
Sbjct: 93 VSWNAMIAAFAR 104
>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV CGS +N+R G + V+SG +NV V +SL+S + G++ D +F KM R
Sbjct: 268 LPV--CGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRER 325
Query: 61 NVVSWTAIIAA 71
+++SW +++A+
Sbjct: 326 DLISWNSMMAS 336
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ GF +N YV ++ + GKCGE DV+++ + R+ SW +I+A A+
Sbjct: 581 GQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALAR 640
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
VT+C + + G Q ++ G +V+VG+SL+ F G G +V +F+++ N
Sbjct: 65 VTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPN 124
Query: 62 VVSWTAIIAAFA 73
+VSWT+++ +A
Sbjct: 125 IVSWTSLMVGYA 136
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCG + G Q ++SG V V +SLIS G C + +F+ M R+
Sbjct: 167 IRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDT 226
Query: 63 VSWTAIIAA 71
+SW +II A
Sbjct: 227 ISWNSIITA 235
>gi|255578711|ref|XP_002530214.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530261|gb|EEF32161.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 834
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + ++R+ +V VGS+L+ KCG + FE MP+RN+
Sbjct: 563 LSACASVATLERGMEAHACSIRAYLNFDVVVGSALVDMYSKCGRIDYASRFFESMPLRNL 622
Query: 63 VSWTAIIAAFAQEWEVDM 80
SW ++I+ +A+ D+
Sbjct: 623 YSWNSMISGYARHGRGDV 640
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 13 RGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
R G + A+R+G V +G+ LI+ KCG D +F M R+ VSW ++I+
Sbjct: 267 RKGREVHGFAIRTGLNDIKVAIGNGLINMYAKCGAVDDARSVFRLMNDRDAVSWNSMISG 326
Query: 72 FAQ 74
F Q
Sbjct: 327 FDQ 329
Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 3 VTSCGSTRNIRGGTQY--QCLAV--RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
+T+ GS + G+Q Q L + +SG ++++YVGS+L+S + G K+FE+M
Sbjct: 151 ITAAGSA--VDSGSQLLEQMLTMVEKSGLLSDMYVGSALVSGFSRFGLFDYAKKIFEQMG 208
Query: 59 VRNVVSWTAIIAAFAQE 75
+RN VS +++ +
Sbjct: 209 MRNAVSMNSLMVGLVTQ 225
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C R++ G + ++S ++ + + +++ GKCG D K+F+ MP RNV
Sbjct: 70 ISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNV 129
Query: 63 VSWTAIIAAFAQ 74
VSWT++IA ++Q
Sbjct: 130 VSWTSVIAGYSQ 141
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +I G Q ++S F A++ ++LIS K ID +F +M R++
Sbjct: 171 IKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDL 230
Query: 63 VSWTAIIAAFAQ-EWEVD-MCY 82
+SW ++IA F+Q +E++ +CY
Sbjct: 231 ISWGSMIAGFSQLGYELEALCY 252
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+ T +I G Q C A+++G ++ V + LI KCG K+F+ + +VVS
Sbjct: 478 ASAETVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVS 537
Query: 65 WTAIIAAFAQ 74
W+++I +AQ
Sbjct: 538 WSSLILGYAQ 547
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S G Q ++++ G +V+ G SL KCG +F ++ ++V
Sbjct: 274 SACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLV 333
Query: 64 SWTAIIAAFA 73
+W AIIA FA
Sbjct: 334 AWNAIIAGFA 343
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
MP +C + G Q R+GF N+++ SSL+ KCG ++F++M +R
Sbjct: 347 MP--ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR 404
Query: 61 NVVSWTAIIAAFA 73
++VSWTA+I A
Sbjct: 405 DMVSWTAMIMGCA 417
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G + ++R G A++YV SSLI KC D ++F + R+ +SW +IIA
Sbjct: 254 DISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIA 313
Query: 71 AFAQ 74
Q
Sbjct: 314 GCVQ 317
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
MP +C + G Q R+GF N+++ SSL+ KCG ++F++M +R
Sbjct: 347 MP--ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR 404
Query: 61 NVVSWTAIIAAFA 73
++VSWTA+I A
Sbjct: 405 DMVSWTAMIMGCA 417
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G + ++R G A++YV SSLI KC D ++F + R+ +SW +IIA
Sbjct: 254 DISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIA 313
Query: 71 AFAQ 74
Q
Sbjct: 314 GCVQ 317
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ V++ +VG+SL+ KCG D Y++F+KM VRN+ W A++ AQ
Sbjct: 1227 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 1286
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
ST N+ G V SG + ++ ++L++ KCG ++F+ P R++V+W A
Sbjct: 633 STHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNA 692
Query: 68 IIAAFA 73
I+ A+A
Sbjct: 693 ILGAYA 698
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G Q A+++GF ++++V S ++ KCG+ ++ +F + + V+
Sbjct: 1116 ACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA 1175
Query: 65 WTAIIAA 71
WT++I+
Sbjct: 1176 WTSMISG 1182
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + T ++ G Q +AV+SG ++V V +SL++ K G ++F M ++
Sbjct: 911 LAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDL 970
Query: 63 VSWTAIIAAFAQ 74
+SW ++I++ AQ
Sbjct: 971 ISWNSMISSCAQ 982
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A++ G +V+V +L++ KCG D +F+ M R+VV W ++ + Q
Sbjct: 753 AIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 805
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ V++ +VG+SL+ KCG D Y++F+KM VRN+ W A++ AQ
Sbjct: 512 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 571
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
ST N+ G V SG + ++ ++L++ KCG ++F+ P R++V+W A
Sbjct: 89 STHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNA 148
Query: 68 IIAAFA 73
I+ A+A
Sbjct: 149 ILGAYA 154
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G Q A+++GF ++++V S ++ KCG+ ++ +F + + V+
Sbjct: 401 ACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA 460
Query: 65 WTAIIAA 71
WT++I+
Sbjct: 461 WTSMISG 467
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
T ++ G Q +AV+SG ++V V +SL++ K G ++F M +++SW ++
Sbjct: 299 TDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSM 358
Query: 69 IAAFAQ 74
I++ AQ
Sbjct: 359 ISSCAQ 364
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
A++ G +V+V +L++ KCG D +F+ M R+VV W ++ + Q
Sbjct: 209 AIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 261
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q ++ V++ +VG+SL+ KCG D Y++F+KM VRN+ W A++ AQ
Sbjct: 150 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 209
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + G Q A+++GF ++++V S ++ KCG+ ++ +F + + V+
Sbjct: 39 ACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA 98
Query: 65 WTAIIAA 71
WT++I+
Sbjct: 99 WTSMISG 105
>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 652
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
S + G Q L V+ G+ NVYVGSSL+ KC D + F ++ N VSW
Sbjct: 58 ASAKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWN 117
Query: 67 AIIAAFAQ 74
A+IA F Q
Sbjct: 118 ALIAGFVQ 125
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
SC ++ G Q LA +S F +N +V SSLI KCG + K FE++ + N +
Sbjct: 363 SCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSKHNTI 422
Query: 64 SWTAIIAAFAQ 74
+W A+I +AQ
Sbjct: 423 AWNAMILGYAQ 433
>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G ++++GFV +V V +SL+S KCG + K+F++MP RNV SW
Sbjct: 138 CHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSW 197
Query: 66 TAIIAAFAQ 74
I++ +A
Sbjct: 198 NVILSGYAD 206
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + NI G + A + G + ++VG+ L+S GKCG + + ++M R+V
Sbjct: 148 LKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV 207
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW +++A +AQ D
Sbjct: 208 VSWNSLVAGYAQNQRFD 224
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG T + G + R + N+ + ++LI KCG +FE M R+VVS
Sbjct: 319 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVS 378
Query: 65 WTAIIAAFA 73
WTA+I+A+
Sbjct: 379 WTAMISAYG 387
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
++ GF ++V+V +SL+ F C EN+ Y++FE+MP R+V+SW ++I+A+ E+
Sbjct: 37 LKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEI 93
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 43 KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
K ENI F MPV+NVVSW A+I+ + E D
Sbjct: 187 KSAENI-----FNHMPVKNVVSWNAMISGYVHNHEFD 218
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G ++ ++ +G++LI KCG+ + ++F M R +
Sbjct: 244 LSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCI 303
Query: 63 VSWTAIIAAFA 73
++WT +++ A
Sbjct: 304 ITWTTMVSGLA 314
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q VRSGF +VYVG+SLI F K G + +F+++ +
Sbjct: 136 IRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTA 195
Query: 63 VSWTAIIAAFAQ 74
V+WT IIA + +
Sbjct: 196 VTWTTIIAGYTK 207
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + GG Q +R G +V V + LI F KC K+F++M V+N+
Sbjct: 237 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 296
Query: 63 VSWTAIIAAFAQ---EWE 77
+SWT +I+ + Q +WE
Sbjct: 297 ISWTTMISGYMQNSFDWE 314
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSCGS + G Q +++ ++ +V + LI K ID K+F+ M +NV
Sbjct: 338 LTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNV 397
Query: 63 VSWTAIIAAFAQE 75
+S+ A+I ++ +
Sbjct: 398 ISYNAMIEGYSSQ 410
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ + ++R G Q+ V+ G +V ++L+ KCG + KMF R+V
Sbjct: 540 ITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV 599
Query: 63 VSWTAIIAAFAQEWEVD 79
V W ++I+ AQ E +
Sbjct: 600 VCWNSMISTHAQHGEAE 616
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 34/51 (66%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
SG ++ ++ + LI+ C K + +F+KMP +N+++W+++++ ++Q+
Sbjct: 56 SGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q L ++ G +++ GS+LI KC D +FE+M +++V W A+ + Q
Sbjct: 453 QIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHL 512
Query: 77 E 77
E
Sbjct: 513 E 513
>gi|357118326|ref|XP_003560906.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510-like [Brachypodium distachyon]
Length = 438
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
T+ G+ ++R + AVR G A+ ++GSSLI G+CG + ++F+K+ R+VV
Sbjct: 197 TALGALNSVR---EVHGFAVRHGMSASCHLGSSLIEAYGRCGSLVAARRVFDKVDERDVV 253
Query: 64 SWTAIIAAFA 73
W++I++A+A
Sbjct: 254 VWSSIVSAYA 263
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCG-ENIDV-YKMFEKM 57
+ + S + R LAV+ G + + +V S+L++ G CG + DV ++F+++
Sbjct: 54 LALKSAAALRVPSAAATIHALAVKCGGLLCSPFVASALVASYGACGPSSPDVARRLFDEL 113
Query: 58 PVRNVVSWTAIIAAFAQEWEV 78
P RN W+A+I+ +A+ +V
Sbjct: 114 PCRNGFVWSAMISVYARSGDV 134
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P SCGST + R ++ GF +++YV ++LI+ G CG K+F++MP R
Sbjct: 90 VPDVSCGSTIHAR--------VLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPER 141
Query: 61 NVVSWTAIIAAFAQ 74
++VSW +++ + Q
Sbjct: 142 DLVSWNSLVCGYGQ 155
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C T ++ G + A++YVG++LI KCG ++F++M ++
Sbjct: 317 LSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDS 376
Query: 63 VSWTAIIAAFA 73
VSWT+II+ A
Sbjct: 377 VSWTSIISGLA 387
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + GG Q C +RSG V +V + + I F KC + K+F++M +NV
Sbjct: 249 LSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNV 308
Query: 63 VSWTAIIAAFAQ 74
VSWT +IA Q
Sbjct: 309 VSWTTVIAGCMQ 320
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + Q L V+ G+V +VYV +SLI F K D +F+ + V+
Sbjct: 148 VRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTS 207
Query: 63 VSWTAIIAAFAQE 75
+WT IIA ++++
Sbjct: 208 FTWTTIIAGYSKQ 220
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+ + ++R G Q+ ++ GF + +V ++L+ K G + +K F ++
Sbjct: 552 ITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDT 611
Query: 63 VSWTAIIAAFAQEWEVD 79
W ++IA +AQ E +
Sbjct: 612 ACWNSMIATYAQHGEAE 628
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SCGS + G Q A++ + +V + LI KC D K+F M ++
Sbjct: 350 LNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDL 409
Query: 63 VSWTAIIAAFAQE 75
VS+ A+I ++++
Sbjct: 410 VSYNAMIEGYSRQ 422
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q L ++ G + + GS+LI KC D +FE++ +++V WTA+ + + Q+
Sbjct: 465 QIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQS 524
Query: 77 E 77
E
Sbjct: 525 E 525
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CGS + + + A+R+G +V+VG++LI KCG + K+F M ++VVS
Sbjct: 281 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 340
Query: 65 WTAIIAAFAQ 74
W A++A ++Q
Sbjct: 341 WNAMVAGYSQ 350
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-- 60
+ +CG + R G+ + L +GF +NV++ ++L++ +CG + +F+++ R
Sbjct: 169 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 228
Query: 61 -NVVSWTAIIAA 71
+V+SW +I++A
Sbjct: 229 DDVISWNSIVSA 240
>gi|242053565|ref|XP_002455928.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
gi|241927903|gb|EES01048.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
Length = 537
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
A ++G VYV SSL+ F GKCGE D +F+ MP R VV+W ++ A+ +D
Sbjct: 200 AWKAGVAECVYVMSSLVDFYGKCGEVEDARAVFDAMPERTVVTWNTMLMAYIHNGRID 257
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
I GG Q +AV SG +V +GSS+I+F K G +FE+M R+ V+W +IA
Sbjct: 291 IDGGRQGHAVAVSSGLEMDVILGSSMINFYCKVGLVEAAEAVFEQMKERDAVTWNLMIAG 350
Query: 72 FAQEWEVDMCY 82
+ Q+ ++D +
Sbjct: 351 YFQDGQIDKAF 361
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN 61
C + ++R G Q V+ G + N YVG+ L F +CG D + +P RN
Sbjct: 79 CVTAGSLRAGRQVHAALVKRGPYYCRNAYVGTKLTVFYARCGALDDAERALGALPERHRN 138
Query: 62 VVSWTAIIAAFAQ 74
+W A+I +++
Sbjct: 139 AFAWAAVIGLWSR 151
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C ++ + G LA++S F + ++L+ KCG+ ++FEKM RNV
Sbjct: 258 LVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 317
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT++IA + ++ D
Sbjct: 318 VSWTSMIAGYTRDGRSD 334
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S + G + +R+G+ ++ +V ++L+ KCG +F+ +P +++VS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500
Query: 65 WTAIIAAFA 73
WT +IA +
Sbjct: 501 WTVMIAGYG 509
>gi|410109965|gb|AFV61062.1| pentatricopeptide repeat-containing protein 81, partial [Aloysia
herrerae]
Length = 399
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE V+
Sbjct: 273 SCSDLATLQLGRQIHVLVVKSGFEGNEYVSSALIFMYSKCGIIEDARESFESSHKETSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + +I G + + + GF +VYVG++L+ G CG D ++F++MP R+VVSW
Sbjct: 169 CSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSW 228
Query: 66 TAIIAAFA 73
II +
Sbjct: 229 NTIIGLLS 236
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+ G + ++R G ++++ +SLI K G + + +F + RN+VSW A+IA +
Sbjct: 379 KAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANY 438
Query: 73 A 73
A
Sbjct: 439 A 439
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ G + +A+R+ ++++V +SL+ F KCG ++F ++ ++V
Sbjct: 570 ISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDV 629
Query: 63 VSWTAIIAAFAQEWEVD 79
SW +I + E++
Sbjct: 630 ASWNTMILGYGMIGELE 646
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
C +V+ G + V ++L+ GKCG ++++F + +N VSW +II A
Sbjct: 284 HCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLA 338
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P+ S + R R G + +SGF +NV +G++LI KCG + K+F+ M +
Sbjct: 530 LPMCSLLAVR--RQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK 587
Query: 61 NVVSWTAIIAAFA 73
+VV+WTA+I+AF
Sbjct: 588 DVVTWTALISAFG 600
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+I G C ++ GF A + +G+SL+ KCGE D+ K+F M +++SW +IA
Sbjct: 437 DINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Query: 71 A 71
+
Sbjct: 497 S 497
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G A+ GF +++Y+G++LI + + + +FE+M R+
Sbjct: 128 INSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDS 187
Query: 63 VSWTAIIAAFAQE--WE--VDMCYTF 84
VSW ++I+ + WE +DM + F
Sbjct: 188 VSWNSLISGYCSNGFWEDALDMYHKF 213
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CGS ++ G + + G +V +G+ L+S K + ++F KM V++ V+
Sbjct: 231 ACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVT 290
Query: 65 WTAIIAAFAQ 74
W +I +AQ
Sbjct: 291 WNTMICGYAQ 300
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + +++ G + SGF + + LI KCG+ + ++F+ ++
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDS 388
Query: 63 VSWTAIIAAFAQ 74
V+W ++I + Q
Sbjct: 389 VTWNSLINGYTQ 400
>gi|302823333|ref|XP_002993320.1| hypothetical protein SELMODRAFT_136907 [Selaginella moellendorffii]
gi|300138893|gb|EFJ05645.1| hypothetical protein SELMODRAFT_136907 [Selaginella moellendorffii]
Length = 504
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV--ANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+++C S + G + SG + ++ + ++L++ GKCG ID +F +P R
Sbjct: 193 LSACSSAEFLGDGRRIHERIAASGVIDESSTRLSNALVTMYGKCGSLIDAESVFNSLPCR 252
Query: 61 NVVSWTAIIAAFAQ 74
+VSWT++IAA+AQ
Sbjct: 253 TIVSWTSLIAAYAQ 266
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++ + ++R G + G ++V G++L++ +CG FE++ +N
Sbjct: 298 VSALDACEDLREGRKIHATIAAKGLSSSVIPGTALVNMYDRCGALASARAAFEEIRGKNS 357
Query: 63 VSWTAIIAAFAQE 75
+SW AII A+A +
Sbjct: 358 ISWNAIIGAYAHQ 370
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA R G +G++L+S G+CG + +F MP RN V+W +I A AQ
Sbjct: 111 LAAR-GLEREALIGNTLVSMYGRCGSLDEAMAVFVGMPYRNGVTWGILIGAHAQ 163
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++ GG + SGF + +G++L+S +CG +F++M R++++W A+IA
Sbjct: 2 DLAGGERLHARIEASGFDLSGNLGTALVSMYARCGGLDRARDLFDRMRKRDIIAWNAMIA 61
Query: 71 AFA 73
A++
Sbjct: 62 AYS 64
>gi|297746034|emb|CBI16090.3| unnamed protein product [Vitis vinifera]
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+ C + + G Q L+++ GF N+ VG+ LI K G NID + MF+ MP RN
Sbjct: 17 LVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSK-GWNIDASRLMFDLMPERN 75
Query: 62 VVSWTAIIAAFAQ 74
+++WT+++A +A
Sbjct: 76 IITWTSMVAGYAH 88
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G + G Q L +++G+ +N+ V + L+S +CG D ++F M +V+SW
Sbjct: 225 GMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWN 284
Query: 67 AIIAAFA 73
++++ A
Sbjct: 285 SLLSGCA 291
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S +++ G + L ++SG+ + + + ++LI+ KCG +D F ++ +V
Sbjct: 234 LTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDV 293
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAAFA+
Sbjct: 294 VSWNAMIAAFAR 305
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
NV ++++ K GE +F MP +NVVSWT +I+ + + + D
Sbjct: 98 NVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFD 147
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+C S +++ G + L ++SG+ + + + ++LI+ KCG +D F ++ +V
Sbjct: 306 LTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDV 365
Query: 63 VSWTAIIAAFAQ 74
VSW A+IAAFA+
Sbjct: 366 VSWNAMIAAFAR 377
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
NV ++++ K GE +F MP +NVVSWT +I+ + + + D
Sbjct: 170 NVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFD 219
>gi|302796687|ref|XP_002980105.1| hypothetical protein SELMODRAFT_111767 [Selaginella
moellendorffii]
gi|300152332|gb|EFJ18975.1| hypothetical protein SELMODRAFT_111767 [Selaginella
moellendorffii]
Length = 696
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + + G Q + SG A+V + +SL+ GKCG + F++MP R++
Sbjct: 17 VSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDL 76
Query: 63 VSWTAIIAAFAQ 74
+SW A+I +AQ
Sbjct: 77 ISWNAMITVYAQ 88
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RNVV 63
+C S + G LA+ SG ++ + +SLIS GKC D +F++M RNV+
Sbjct: 221 ACSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSSLGDARDVFDRMRYRRNVI 280
Query: 64 SWTAIIAAFAQ 74
+WTA++A AQ
Sbjct: 281 TWTAMVAGHAQ 291
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + G + L + + N V ++ S KC D ++F +P ++ VS
Sbjct: 520 ACATVGAHEQGRRIHALVLAGPYAQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVS 579
Query: 65 WTAIIAAFAQE 75
W AI++A+A++
Sbjct: 580 WNAIVSAYAKQ 590
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
SG + +++++ GK G + ++F + +V+SW+A+IAA+ Q WE
Sbjct: 442 SGLEQRMVAANAVMTAYGKAGHPDEAREVFLGISRPSVISWSALIAAYGQHWE 494
>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C T+ + G + +GF +N+++ + LI F K G+ + K+F++MP R VVSW
Sbjct: 7 CIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSW 66
Query: 66 TAIIAAFAQ 74
+A I+ ++Q
Sbjct: 67 SAQISGYSQ 75
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C R ++ G Q Q +S F +N+ V S+L+ KCG+ D +F M R+VVS
Sbjct: 107 ACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVS 166
Query: 65 WTAIIAAFA 73
W AII A+A
Sbjct: 167 WNAIIGAYA 175
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ G Q LA++ +V +G++LI K GE D + F +M +NV+SW
Sbjct: 311 CANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISW 370
Query: 66 TAIIAAFA 73
T++I +
Sbjct: 371 TSLITGYG 378
Score = 34.3 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 35/59 (59%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
Q L ++ G+ +++ + SLI KC + +++ MP+++++S TA++ +A++
Sbjct: 220 QIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARD 278
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CGS + + + A+R+G +V+VG++LI KCG + K+F M ++VVS
Sbjct: 274 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 333
Query: 65 WTAIIAAFAQ 74
W A++A ++Q
Sbjct: 334 WNAMVAGYSQ 343
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-- 60
+ +CG + R G+ + L +GF +NV++ ++L++ +CG + +F+++ R
Sbjct: 162 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 221
Query: 61 -NVVSWTAIIAA 71
+V+SW +I++A
Sbjct: 222 DDVISWNSIVSA 233
>gi|410110047|gb|AFV61103.1| pentatricopeptide repeat-containing protein 81, partial [Neosparton
ephedroides]
Length = 359
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE + V+
Sbjct: 254 SCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDARESFEASHKDSSVT 313
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 314 WNSIIFAYAQ 323
>gi|410110025|gb|AFV61092.1| pentatricopeptide repeat-containing protein 81, partial [Lippia
macrophylla]
Length = 372
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q V+SGF N YV S+LI KCG D ++ FE V+
Sbjct: 269 SCSDLATLQLGRQIHVXVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFESSHKETSVT 328
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 329 WNSIIFAYAQ 338
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 43 KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ ++ C T V
Sbjct: 1 KCRXVEDANKVFKYMRERNAVSWNALIGGYAEMGNLERCVTLFV 44
>gi|357146631|ref|XP_003574060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 735
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
R G + C A+R+G +N++V S L+ GK G+ + F+ + +NVV+W +++AA+
Sbjct: 281 RFGKEVHCYALRNGLTSNIFVSSKLVDLYGKTGDMVSAANFFQGIRNKNVVTWNSLLAAY 340
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q VR G NVY+GSSLI +C + +F + RNV W +I ++
Sbjct: 98 GKQLHSYVVRCGIKLNVYIGSSLIGMYSECRQFAYARSVFSAIDERNVTVWNELIQSYIN 157
Query: 75 EWEVDMCY 82
+ +D +
Sbjct: 158 DGRMDKAW 165
>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
Length = 770
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q V+ GF V+VG++LIS + G ++ ++FE+M R++VSW A+I+ ++Q
Sbjct: 183 GLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQ 242
Query: 75 E 75
E
Sbjct: 243 E 243
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++CG +N+ Q L++++ +V V + LIS KC D +F+ M RNV
Sbjct: 273 VSACGYEKNLELARQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNV 332
Query: 63 VSWTAIIA-------AFAQEWEVDMCY 82
VSWT +I+ +F E +D Y
Sbjct: 333 VSWTTMISIDEAEAVSFFNEMRLDGVY 359
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C N+ G CL + SG ++ +G +L+ KCG+ + FE MP+++VVS
Sbjct: 155 ACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVS 214
Query: 65 WTAIIAAFAQEWEVD 79
WT+++ A + VD
Sbjct: 215 WTSMLCAQTKHGSVD 229
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C + +A++ GFV V+V ++L+ G D + F++M RNV
Sbjct: 52 VKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNV 111
Query: 63 VSWTAIIAAFAQ 74
VSW ++I +AQ
Sbjct: 112 VSWNSMIGGYAQ 123
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+SL+ KCG+ ++F +M RNVVSW II A
Sbjct: 317 NSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLA 355
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
L +R G ++YV +SLI GKCGE D K+F+ M +R+V SW A++A + + +D
Sbjct: 196 LILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCID 254
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PVRNV 62
+C + G Q LA R G +N V +L + KCG +D F+K+ +N+
Sbjct: 314 ACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNL 373
Query: 63 VSWTAIIAAFA 73
++W +I A+A
Sbjct: 374 IAWNTMITAYA 384
>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
Length = 1539
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + +R+ ++V VGS+L+ KCG + FE MP+RNV
Sbjct: 1172 LSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNV 1231
Query: 63 VSWTAIIAAFAQE 75
SW ++I+ +A+
Sbjct: 1232 YSWNSMISGYARH 1244
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+SGF+ ++YVGS+L+S + G D +FE+M VRNVVS ++ ++
Sbjct: 783 KSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ 834
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
+ +++ GFV N+++ ++LI+ + G+ K+F++M RN+V+W +I+ + Q
Sbjct: 565 ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 624
Query: 77 EVD 79
+ D
Sbjct: 625 KPD 627
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC S I G Q C ++ G +V V ++L++ + G + K+F MP +
Sbjct: 968 LSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQ 1027
Query: 63 VSWTAIIAAFAQ 74
VSW ++I A +
Sbjct: 1028 VSWNSVIGALSD 1039
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 13 RGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
R G + +R+G N V +G+ L++ K G D +FE M ++ VSW ++I+
Sbjct: 876 RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 935
Query: 72 FAQ-EWEVDMCYTFI 85
Q E D +F+
Sbjct: 936 LDQNECSEDAAESFL 950
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q L ++ + ++V V + LIS G C ++ D +F+++ +RN +SW +II+ ++
Sbjct: 666 GVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYS 725
Query: 74 QEWEVDMCYTF 84
+ + Y
Sbjct: 726 RRGDXVSAYDL 736
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-PVRNVVSWTAIIAAF 72
Q L ++ + +G++L+S GKCGE + K+F +M R+ VSW ++I+ +
Sbjct: 1084 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGY 1140
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +R++ G Q VR+G+ +V+ ++L+ K G+ +FEKMP +V
Sbjct: 212 VNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADV 271
Query: 63 VSWTAIIAA 71
VSW A I+
Sbjct: 272 VSWNAFISG 280
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S G Q ++ F ++V+ G++L+ KCG D F +P R +
Sbjct: 517 LNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGI 576
Query: 63 VSWTAIIAAFAQ 74
VSW+A+I AQ
Sbjct: 577 VSWSAMIGGLAQ 588
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM----PVRNVVSWT 66
++R G Q LAV + V +V+V ++L++ G G + +MF++ RN VSW
Sbjct: 115 DVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWN 174
Query: 67 AIIAAFAQ 74
+I+A+ +
Sbjct: 175 TMISAYVK 182
>gi|410109963|gb|AFV61061.1| pentatricopeptide repeat-containing protein 81, partial [Aloysia
citrodora]
Length = 391
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE V+
Sbjct: 273 SCSDLATLQLGRQTHVLVVKSGFEGNEYVSSALIFMYSKCGIIKDARESFESSHKETSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G Q L +RSGF +V V + LI F GKC + +F +M +N
Sbjct: 216 LNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA 275
Query: 63 VSWTAIIAAFAQEWE 77
VSW +++AA+ Q E
Sbjct: 276 VSWCSLVAAYVQNHE 290
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G AV++ ++VGS+L+ GKCG D + F++MP +N+
Sbjct: 317 LSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376
Query: 63 VSWTAIIAAFAQEWEVDM 80
V+ ++I +A + +VDM
Sbjct: 377 VTRNSLIGGYAHQGQVDM 394
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
G Q LAV+ G + +V+VG S K D K+F+++P RN+ +W A I+
Sbjct: 127 GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFIS 182
>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC-GENIDVYKMFEKMPVRN 61
+T+ +++ GG Q+ + ++SGF N +VGS LI KC G ++ K+FE++ +
Sbjct: 250 LTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPD 309
Query: 62 VVSWTAIIAAFAQ 74
+V W +I+ F+Q
Sbjct: 310 LVLWNTMISGFSQ 322
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++C + + G Q LA++S N V V ++L++ KCG D ++F+ MP N+
Sbjct: 354 SACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNM 413
Query: 63 VSWTAIIAAFAQ 74
VS ++IA +AQ
Sbjct: 414 VSLNSMIAGYAQ 425
>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 598
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G Q V+SGF+ N V ++L+ KCG D +F+ M R+V
Sbjct: 122 LNACGRVPAVFEGKQVHARLVQSGFLGNKIVQTALLDMYAKCGYVCDARDVFDGMVDRDV 181
Query: 63 VSWTAIIAAFAQ 74
V+WTA+I +A+
Sbjct: 182 VAWTAMICGYAK 193
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDV-YKMFEKMPVR 60
+++C R+IR + + GF + V ++LI KCG NID+ ++ F M R
Sbjct: 317 ISACAQLRDIRM-SNLLTYDIEEGFCEKTHIVSNALIHMQSKCG-NIDLAWREFNIMRNR 374
Query: 61 NVVSWTAIIAAFAQ 74
++ +++A+IAAFA+
Sbjct: 375 DLYTYSAMIAAFAE 388
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q V+ + + +VG+SL+ KCG D Y++F KM VR VV W A++ AQ
Sbjct: 1219 GKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQ 1278
Query: 75 EWEVD 79
VD
Sbjct: 1279 HGHVD 1283
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+++ G + V SG + + Y+ ++LI+ KCG ++F+K R++V+W +I+A
Sbjct: 626 DLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685
Query: 71 AFAQ 74
A+AQ
Sbjct: 686 AYAQ 689
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + G N++ G Q Q A++ GF +++V S ++ KCG+ + ++F ++ +
Sbjct: 1106 IKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDE 1165
Query: 63 VSWTAIIAAFAQEWEVD 79
V+WT +I+ + + + D
Sbjct: 1166 VAWTTMISGYIENGDED 1182
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++S F V V +SL++ K G K F P +++SW +I+++AQ
Sbjct: 913 GEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972
Query: 75 -EWEVDMCYTF 84
E++ TF
Sbjct: 973 NNLEMEAICTF 983
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
AV+ GF +++V +L++ K G +F+KMP R+ V W ++ A+ +
Sbjct: 743 AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q V+ + + +VG+SL+ KCG D Y++F KM VR VV W A++ AQ
Sbjct: 1219 GKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQ 1278
Query: 75 EWEVD 79
VD
Sbjct: 1279 HGHVD 1283
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+++ G + V SG + + Y+ ++LI+ KCG ++F+K R++V+W +I+A
Sbjct: 626 DLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685
Query: 71 AFAQ 74
A+AQ
Sbjct: 686 AYAQ 689
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + G N++ G Q Q A++ GF +++V S ++ KCG+ + ++F ++ +
Sbjct: 1106 IKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDE 1165
Query: 63 VSWTAIIAAFAQEWEVD 79
V+WT +I+ + + + D
Sbjct: 1166 VAWTTMISGYIENGDED 1182
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++S F V V +SL++ K G K F P +++SW +I+++AQ
Sbjct: 913 GEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972
Query: 75 -EWEVDMCYTF 84
E++ TF
Sbjct: 973 NNLEMEAICTF 983
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
AV+ GF +++V +L++ K G +F+KMP R+ V W ++ A+ +
Sbjct: 743 AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795
>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
Length = 623
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C S R + G V SG +V+VG++++SF GKC D ++F+++ +++V
Sbjct: 213 ACASLRTLVEGKTIHERIVASGVETDVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVC 272
Query: 65 WTAIIAAFAQ 74
W A+I A+AQ
Sbjct: 273 WNAMIGAYAQ 282
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G+++++ G + + +G + Y+G+ L+ G+CG D F + RNV SWT
Sbjct: 13 GNSKSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGIHQRNVFSWT 72
Query: 67 AIIAAFAQEWE 77
+I+ Q E
Sbjct: 73 ILISLLVQNGE 83
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + + G + ++ +G ++V V +SLI G CG FE + +NVVSW
Sbjct: 418 CANFGDFTTGREVHSRSLATGCCSDV-VQNSLICLYGGCGNLEAAQTAFESVASKNVVSW 476
Query: 66 TAIIAAFAQEWEVD 79
++I+AA+A+ E D
Sbjct: 477 SSIVAAYARNGEED 490
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NV 62
SC ST + G+ A G++++ V ++LI+ KCG + ++F + R NV
Sbjct: 314 SCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTNV 373
Query: 63 VSWTAIIAAFAQE 75
++W +I A AQE
Sbjct: 374 ITWNTMIVANAQE 386
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C T ++ G + G ++ G++L++ C + +FE+M R+VVS
Sbjct: 112 ACSVTGDLSLGKKIHERVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVS 171
Query: 65 WTAIIAAFAQ 74
WT II+A+A
Sbjct: 172 WTIIISAYAH 181
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C S G + + G+ ++ Y+ +SLI+F K G N K+F+ M RNV
Sbjct: 55 VKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNV 114
Query: 63 VSWTAIIAAFAQEWEVDMCYT 83
V WT +I + + E D+ ++
Sbjct: 115 VPWTTMIGCYTRAGEHDVAFS 135
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCL---AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
VT G + QCL ++ GF ++V + +S+++ KCG D +FE M
Sbjct: 150 VTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDA 209
Query: 60 RNVVSWTAIIAAFAQ 74
R+V+SW ++++ +AQ
Sbjct: 210 RDVISWNSLVSGYAQ 224
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
+R+G + ++ +SLI KCG +++FE M ++V+SWTA+I+ Q DM
Sbjct: 274 LRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAV 333
Query: 83 T 83
T
Sbjct: 334 T 334
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G +S + + ++L+ KCG+ K F++MP +++
Sbjct: 456 LQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDL 515
Query: 63 VSWTAIIAAFA 73
VSW++IIA +
Sbjct: 516 VSWSSIIAGYG 526
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + GT +R ++ +SL++ KCG +F++M R++
Sbjct: 355 LAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414
Query: 63 VSWTAIIAAFAQ 74
VSW AI++ AQ
Sbjct: 415 VSWNAIVSGHAQ 426
>gi|242051244|ref|XP_002463366.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
gi|241926743|gb|EER99887.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
Length = 745
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q LA R+G +V+VG++L++ + G K+FE+MP R++VSW A++ AQ+
Sbjct: 169 QLHALASRAGIATDVFVGNALVTAYSRGGLMDAARKVFEEMPARDLVSWNALVCGLAQDG 228
Query: 77 E 77
E
Sbjct: 229 E 229
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG+ + G Q AV+ G +V + + L++ KCG ++FE M R+V
Sbjct: 258 IPACGAEGKLELGRQIHGFAVKLGVEGHVSIANVLVAMYYKCGTPGCARRLFEFMGERDV 317
Query: 63 VSWTAIIA 70
+SWT +++
Sbjct: 318 ISWTTVMS 325
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Y C A++ G A+ YV +LI K G + +K F + R++++WTAII+A ++
Sbjct: 468 GQMYHCQALKLGLGASEYVSGALIDMYAKRGSLEESWKAFGETVHRSLIAWTAIISANSK 527
Query: 75 EWEVD 79
D
Sbjct: 528 HGNYD 532
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G + C ++SGF AN +V ++LI G Y++F +M RNV
Sbjct: 58 LKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNV 117
Query: 63 VSWTAIIAAF 72
++WTA+I +
Sbjct: 118 IAWTAMINGY 127
Score = 37.7 bits (86), Expect = 0.94, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G A G+ NVYV ++L+ KCG +F+ M +++
Sbjct: 253 LSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDL 312
Query: 63 VSWTAIIAAFA 73
+SW II A
Sbjct: 313 ISWNTIIGGLA 323
>gi|218201741|gb|EEC84168.1| hypothetical protein OsI_30545 [Oryza sativa Indica Group]
Length = 503
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +RNI G Q + VR G+ +V+ ++L+ K G +FEKMP +V
Sbjct: 85 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 144
Query: 63 VSWTAIIAA 71
VSW A+I+
Sbjct: 145 VSWNALISG 153
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMF-EKMPVRNVVSWTAIIAAFAQEWEVD 79
+A+ +GF ++V+V ++L++ G G D ++F E RN VSW +++A+ + D
Sbjct: 1 MAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN---D 57
Query: 80 MC 81
C
Sbjct: 58 QC 59
>gi|410109975|gb|AFV61067.1| pentatricopeptide repeat-containing protein 81, partial
[Coelocarpum swinglei]
Length = 394
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC ++ G Q L V+SGF N YV S+LI KCG D + FE + V+
Sbjct: 273 SCSDLATLQLGRQVHVLVVKSGFEGNEYVASALIFMYSKCGIIEDSRESFEASHKNSSVT 332
Query: 65 WTAIIAAFAQ 74
W +II A+AQ
Sbjct: 333 WNSIIFAYAQ 342
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
KC D K+F+ M RN VSW A+I +A+ ++ C V
Sbjct: 4 AKCRRVEDANKVFKYMQERNTVSWNALIGGYAEMGNLERCIKLFV 48
>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S G Q + ++ GF N +V +SL+ +CG+ Y +F M +NV
Sbjct: 266 LSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNV 325
Query: 63 VSWTAIIAAF---AQEWE 77
V W A+IA+F A WE
Sbjct: 326 VIWNAMIASFSRHAHSWE 343
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + I Q +A++ +N +VG++++ KC D +FEKMP R +
Sbjct: 165 ICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTL 224
Query: 63 VSWTAIIAAFAQ 74
V+W+++ A + Q
Sbjct: 225 VTWSSLFAGYVQ 236
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C +++ G LA+ G V + + LI+ KCG N +F+ M VR++VSW
Sbjct: 67 CAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSW 126
Query: 66 TAIIAAFAQEWE 77
+IA + E
Sbjct: 127 NTMIAGYTHSGE 138
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S+ ++ G AV G ++V V ++L + KCG + ++F+ MP+R+
Sbjct: 322 LNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSA 381
Query: 63 VSWTAIIAAFAQEWE 77
VSW ++ A+AQ E
Sbjct: 382 VSWNGMLQAYAQHGE 396
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 41/69 (59%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + N++ G + + F +++VG++LI+ +C + ++F +M +N+++
Sbjct: 120 ACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLIT 179
Query: 65 WTAIIAAFA 73
W+AII AFA
Sbjct: 180 WSAIITAFA 188
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+V+V ++L++ KCG D K+F+ MP R+V +W ++I+A++
Sbjct: 44 DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYS 87
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,280,325,618
Number of Sequences: 23463169
Number of extensions: 40005165
Number of successful extensions: 126837
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4768
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 106607
Number of HSP's gapped (non-prelim): 19909
length of query: 86
length of database: 8,064,228,071
effective HSP length: 56
effective length of query: 30
effective length of database: 6,750,290,607
effective search space: 202508718210
effective search space used: 202508718210
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)