BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043594
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E9O|X Chain X, Vaccinia D8l Ectodomain Structure
 pdb|4ETQ|X Chain X, Vaccinia Virus D8l Imv Envelope Protein In Complex With
          Fab Of Murine Igg2a La5
 pdb|4ETQ|C Chain C, Vaccinia Virus D8l Imv Envelope Protein In Complex With
          Fab Of Murine Igg2a La5
          Length = 269

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 14/60 (23%)

Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK---CGEN--IDVYKMFEKMPVRNVVSW 65
          N +GG       +  GF+ N YV SSL  + GK    G N  IDVYK   ++   N+V W
Sbjct: 46 NFKGGY------ISGGFLPNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEI---NLVHW 96


>pdb|3R0A|A Chain A, Possible Transcriptional Regulator From Methanosarcina
           Mazei Go1 (gi 21227196)
 pdb|3R0A|B Chain B, Possible Transcriptional Regulator From Methanosarcina
           Mazei Go1 (gi 21227196)
          Length = 123

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 50  VYKMFEKMPVRNVV-----SWTAIIAAFAQEWE 77
           +YK++ K  +RN++     SW   +    +EWE
Sbjct: 87  IYKIYSKNQIRNIIQKIVQSWADRLGQELKEWE 119


>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
           Complex With Stem Cell Factor (Scf)
 pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
           Complex With Stem Cell Factor (Scf)
          Length = 489

 Score = 25.4 bits (54), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 45  GENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
           GEN+D+   +E  P      W  +   F  +WE
Sbjct: 303 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE 335


>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
           Receptor Tyrosine Kinase, Kit
          Length = 524

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 45  GENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
           GEN+D+   +E  P      W  +   F  +WE
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE 360


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.136    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,477,468
Number of Sequences: 62578
Number of extensions: 78961
Number of successful extensions: 259
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 4
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)