BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043594
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/79 (54%), Positives = 59/79 (74%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V SCG R+ R G+ + CLA++ GF+++VY+GSSL+ GE + YK+FE+MP RNV
Sbjct: 127 VRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNV 186
Query: 63 VSWTAIIAAFAQEWEVDMC 81
VSWTA+I+ FAQEW VD+C
Sbjct: 187 VSWTAMISGFAQEWRVDIC 205
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G C + G + +++ +SLIS KCG+ D +++F++ ++V
Sbjct: 228 LSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDV 287
Query: 63 VSWTAIIAAFAQ 74
VSW ++IA +AQ
Sbjct: 288 VSWNSMIAGYAQ 299
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG IR G Q + + GF ++YV +SL+ F G CGE+ + K+F +MPVR+VVS
Sbjct: 115 ACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVS 174
Query: 65 WTAIIAAFAQ 74
WT II F +
Sbjct: 175 WTGIITGFTR 184
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S + G + +G + ++G++++ KCG ++F + +NV
Sbjct: 313 LSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNV 372
Query: 63 VSWTAIIAAFA 73
+W A++ A
Sbjct: 373 FTWNALLGGLA 383
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
SC G CL++++G+ A+V+VGSSL+ KCGE + KMF++MP RNVV+
Sbjct: 125 SCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVT 184
Query: 65 WTAIIAAFAQEWE 77
W+ ++ +AQ E
Sbjct: 185 WSGMMYGYAQMGE 197
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C ++ + G Q L+++S F ++ +VGSSL+S KCG Y++F ++PV+N+
Sbjct: 224 ISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNL 283
Query: 63 VSWTAIIAAFAQ 74
W A++ A+AQ
Sbjct: 284 GIWNAMLKAYAQ 295
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
S TR+ G Q V+SG V ++LI+F K D + FE P ++ +
Sbjct: 24 SSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTT 83
Query: 65 WTAIIAAFAQ 74
W++II+ FAQ
Sbjct: 84 WSSIISCFAQ 93
>sp|Q1PFA6|PP144_ARATH Pentatricopeptide repeat-containing protein At2g02750
OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2
Length = 613
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
G +I GG Q CLA++SGF VYVG+SL+S +CGE + +MFEK+P ++VV++
Sbjct: 140 GGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYN 199
Query: 67 AIIAAFAQ 74
A I+ +
Sbjct: 200 AFISGLME 207
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN 61
+T+C S N++ G Q L ++ F VG++LI KC Y +F ++ RN
Sbjct: 238 ITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRN 297
Query: 62 VVSWTAIIAA 71
++SW ++I+
Sbjct: 298 LISWNSVISG 307
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC ++ G V++GF +V+ ++L+S K + D K+ ++MP R +
Sbjct: 38 LKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGI 97
Query: 63 VSWTAIIAAFAQ 74
S A ++ +
Sbjct: 98 ASVNAAVSGLLE 109
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI---DVYKMFEKMPV 59
+++C ++ G + +++ +++V +SLI KCG + ++ FE P
Sbjct: 375 LSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKP- 433
Query: 60 RNVVSWTAIIAAFAQEWEVD 79
++ V W +I+ + + E +
Sbjct: 434 KDPVFWNVMISGYGKHGECE 453
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 49/72 (68%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + ++ G+Q+ A+ SG + V V +SL++ GKCG+ D ++F +M VR+
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437
Query: 63 VSWTAIIAAFAQ 74
VSWTA+++A+AQ
Sbjct: 438 VSWTAMVSAYAQ 449
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG I G Q +R+ F ++YVGS+LI KC +F++M +NVVS
Sbjct: 279 ACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 338
Query: 65 WTAIIAAFAQ 74
WTA++ + Q
Sbjct: 339 WTAMVVGYGQ 348
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + +R G+ L +R GF +V VG+S + F GKC + K+F +MP RN VSW
Sbjct: 120 CSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSW 179
Query: 66 TAIIAAFAQEWEVD 79
TA++ A+ + E++
Sbjct: 180 TALVVAYVKSGELE 193
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
YV +LI KCG K+FE+MP R++VS+ +++ A
Sbjct: 341 YVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMA 382
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 29/40 (72%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++L+ K G+ ++ K+F++MP R+++S+T++I +A+
Sbjct: 211 NALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + +R G Q L V+ +V+VG+SL+ KCGE D K+F+ M RN
Sbjct: 291 LKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNT 350
Query: 63 VSWTAIIAAFAQE 75
V+WT+IIAA A+E
Sbjct: 351 VTWTSIIAAHARE 363
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CGS + G + +++ NVY+GS+L+ KCGE+ D + + +++P R+V
Sbjct: 392 LRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDV 451
Query: 63 VSWTAIIA 70
VSWTA+I+
Sbjct: 452 VSWTAMIS 459
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ ++ G +A ++ ++NV+VGS+LI KCG + +++F+ MP +N+
Sbjct: 493 LKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNL 552
Query: 63 VSWTAIIAAFAQ 74
VSW A+I +A+
Sbjct: 553 VSWKAMIMGYAR 564
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C G Q V+ G V N+ V SSL+ F +CGE + F+ M ++V+SW
Sbjct: 194 CSRRAEFELGRQVHGNMVKVG-VGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISW 252
Query: 66 TAIIAA 71
TA+I+A
Sbjct: 253 TAVISA 258
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+Y G++LIS C + G+ + K+F+ MP +N V+WTA+I + +
Sbjct: 117 IYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLK 160
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ G Q L +S F+++VY+GS+L+ KCG D ++F++M RNV
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218
Query: 63 VSWTAIIAAFAQ 74
VSW ++I F Q
Sbjct: 219 VSWNSLITCFEQ 230
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV------ANVYVGSSLISFCGKCGENIDVYKMFEK 56
+ +C + G Q ++ GF +++VG+SLI KCG + Y +F K
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452
Query: 57 MPVRNVVSWTAIIAAFAQ 74
M R+ VSW A+I FAQ
Sbjct: 453 MMERDCVSWNAMIIGFAQ 470
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
++SGF +++ + LI KCG D ++F+KMP RN+ +W +++ +
Sbjct: 47 IKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTK 98
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77
+ NV +S+IS MF KM RNVVSW A+IA + Q E
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGE 366
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+++C S I+ G + V++ + N + + ++ + KC + +F+ MP+RN
Sbjct: 260 ISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319
Query: 62 VVSWTAIIAAFA 73
V++ T++I+ +A
Sbjct: 320 VIAETSMISGYA 331
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ + G ++R G L + +G V +V++GSSL+ GKC D K+F++MP RN
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRN 270
Query: 62 VVSWTAIIAAFAQ 74
VV+WTA+IA + Q
Sbjct: 271 VVTWTALIAGYVQ 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + C +++ N G++LI KCG + +FE++ +NV
Sbjct: 313 LSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNV 372
Query: 63 VSWTAIIAAFA 73
+WTA+I FA
Sbjct: 373 YTWTAMINGFA 383
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q+ V+ G ++ +V +SLIS G ++F+ ++VV+WTA+I F +
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVR 181
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 47/70 (67%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG ++R G L++ +GF++NV+VG++L++ +C D K+F++M V +VVS
Sbjct: 136 ACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVS 195
Query: 65 WTAIIAAFAQ 74
W +II ++A+
Sbjct: 196 WNSIIESYAK 205
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C S G Q C AV S + N++VG+ L+ KCG + +F M V++VVSW
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 66 TAIIAAFAQ 74
A++A ++Q
Sbjct: 299 NAMVAGYSQ 307
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61
+ +C S +R G Q A+R+ A ++V + LI KCG D +F+ M +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543
Query: 62 VVSWTAIIAAFA 73
V+WT+++ +
Sbjct: 544 EVTWTSLMTGYG 555
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G Q +RSG + NV+ GS L+ KCG D ++FE+MP RN VSW A+I+A A
Sbjct: 471 GKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHA 529
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
+++ G Q C A+ + + ++VG+SL+ KC + +F+ +P R VSWTA+I+
Sbjct: 366 SLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425
Query: 71 AFAQE 75
+ Q+
Sbjct: 426 GYVQK 430
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L+V +GF + VG+ ++ F K ++ +F++MP + VS+ +I++++Q
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82
N +++IS K G+ +F+ MP R VV+WT ++ +A+ D +
Sbjct: 78 NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAF 130
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S + G Q Q ++ GF +VYVG++LI G C + D K+F++M RNV
Sbjct: 120 LKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNV 179
Query: 63 VSWTAIIAAFAQEWEVDMCY 82
VSW +I+ A + ++++ +
Sbjct: 180 VSWNSIMTALVENGKLNLVF 199
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
N +G++L+ K G +FE+M +NV +W+A+I AQ
Sbjct: 246 NCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQ 290
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ +IR GTQ LA+++GF +V+ ++L+ KCG+ K+F+KMP R++
Sbjct: 126 IKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSI 185
Query: 63 VSWTAIIAAFAQEWEVD 79
VSWT ++ ++D
Sbjct: 186 VSWTTMLYGLVSNSQLD 202
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
A ++GFV + ++G++LI KCG D K+F+ M +++ +W ++I +
Sbjct: 277 AHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLG 328
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ SC +R G C AV SGF + YV ++L++F KCG+ ++F++MP +++
Sbjct: 114 IKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSI 173
Query: 63 VSWTAIIAAFAQ 74
V+W ++++ F Q
Sbjct: 174 VAWNSLVSGFEQ 185
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C T + G+ + G NV +G++LI+ +CG+ ++F+KM NV
Sbjct: 215 LSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNV 274
Query: 63 VSWTAIIAAFA 73
+WTA+I+A+
Sbjct: 275 AAWTAMISAYG 285
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +R G Q L V+ G+ +++V +SL+ F +CGE K+F++M RNV
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200
Query: 63 VSWTAIIAAFAQ 74
VSWT++I +A+
Sbjct: 201 VSWTSMICGYAR 212
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC RNI G +R+GF + + ++LI KC +++F++M + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 63 VSWTAIIAAFAQEWEVD 79
V+W +I+A + + EVD
Sbjct: 404 VTWNSIVAGYVENGEVD 420
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 24 RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
++G +V +G++L+ +CG+ +F + R+V +WT
Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 540
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++CGS + G Q + A N+YV + L+ GKCG + ++FE MPV+N
Sbjct: 341 LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE 400
Query: 63 VSWTAIIAAFAQE 75
+W A+I A+A +
Sbjct: 401 ATWNAMITAYAHQ 413
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++R G + +A+ + ++GS LIS GKCG+ ++F +M ++ V+
Sbjct: 242 ACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA 301
Query: 65 WTAIIAAFAQ 74
WTA+I ++Q
Sbjct: 302 WTAMITVYSQ 311
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C I G + G +V++ SLI KCG+ K+F+++ R+ VS
Sbjct: 141 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 200
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 201 WNSMISGYSE 210
>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340
OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
Length = 658
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ F N +V + LI+ KCG+ D +F +MP RN VSW ++IAAFA+
Sbjct: 376 GKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFAR 435
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85
V +SL+S KCG+ +D K+F++MP+R+V+S + F + E + + +
Sbjct: 92 VWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLL 144
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
LA+ SG+ + VG+ LI+ KCG ++ +F+ M RNV++ TA+I+ +
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIE 233
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ I G Q L + G + + + S+L+ KCG D + +FE +
Sbjct: 263 LAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDE 322
Query: 63 VSWTAIIAAFAQEWEVDMCYTFIV 86
VS T I+ AQ + F +
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFFI 346
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
++R G + +RSGF + +YV +SL+ CG+ YK+F+KMP +++V+W ++I
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195
Query: 71 AFAQ 74
FA+
Sbjct: 196 GFAE 199
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G + ++ G N++ + L+ +CG + +F++M +N
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS 288
Query: 63 VSWTAIIAAFA 73
VSWT++I A
Sbjct: 289 VSWTSLIVGLA 299
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G L V++G V +V+VG++L+SF G G D ++F+ MP RN+
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNL 253
Query: 63 VSWTAIIAAFA 73
VSW ++I F+
Sbjct: 254 VSWNSMIRVFS 264
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C +++R G + +R+ +++V S++S CGE V +F+ M +++
Sbjct: 503 LSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSL 562
Query: 63 VSWTAIIAAFAQ 74
VSW +I + Q
Sbjct: 563 VSWNTVITGYLQ 574
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ C +++ FV N V ++ ++ KCG ++F + + V SW A+I AQ
Sbjct: 416 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+PV C R I G AV+ + + ++L+ KCG + +F+ +
Sbjct: 299 LPV--CAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNK 356
Query: 61 NVVSWTAIIAAFAQE 75
NVVSW ++ F+ E
Sbjct: 357 NVVSWNTMVGGFSAE 371
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 1 MPV-TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
MPV +C ++R G + A++ + ++ SLI K G K+F +
Sbjct: 601 MPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKE 660
Query: 60 RNVVSWTAIIAAFA 73
++ SW A+I +
Sbjct: 661 KSTASWNAMIMGYG 674
>sp|O82363|PP203_ARATH Pentatricopeptide repeat-containing protein At2g46050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=3
SV=1
Length = 590
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 46/80 (57%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + N++ G Q CL V+ G ++ + +SL+ F GKCG ++ ++FE + R++V W
Sbjct: 152 CTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLW 211
Query: 66 TAIIAAFAQEWEVDMCYTFI 85
A+++++ +D + +
Sbjct: 212 NALVSSYVLNGMIDEAFGLL 231
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+S S I G Q + + + ++ V ++L++ K D + FE M VRNVV
Sbjct: 249 SSLLSACRIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVV 308
Query: 64 SWTAIIAAFAQEWE 77
SW A+I FAQ E
Sbjct: 309 SWNAMIVGFAQNGE 322
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
Q V+ G ++++ + L+ K E D K+F++MP+RN+V+W +I Q
Sbjct: 57 QEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQ 114
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC I Q Q + + G + V +SLIS + G + F + ++
Sbjct: 349 LSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIREPDL 408
Query: 63 VSWTAIIAAFA 73
VSWT++I A A
Sbjct: 409 VSWTSVIGALA 419
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + NI G AV++ +++VYVGSSL+ + G+ ++F +MP RN
Sbjct: 115 LKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNA 174
Query: 63 VSWTAIIAAFAQ 74
V+WTAII
Sbjct: 175 VTWTAIITGLVH 186
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ + +C R ++ G + GFV + V +SL + +CGE D +FE M R
Sbjct: 214 IALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSER 273
Query: 61 NVVSWTAIIAAFAQ-EWEVDMCYTFI 85
+VVSWT++I A+ + EV TFI
Sbjct: 274 DVVSWTSLIVAYKRIGQEVKAVETFI 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
++C S + G Q C + G ++ V +S++ CG + +F+ M R+++
Sbjct: 318 SACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDII 377
Query: 64 SWTAIIAAFAQ 74
SW+ II + Q
Sbjct: 378 SWSTIIGGYCQ 388
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
I GG Q LA+ G N V SSLI+ KCG + +F + ++VS TA+I
Sbjct: 427 IEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMING 486
Query: 72 FAQE 75
+A+
Sbjct: 487 YAEH 490
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 45/73 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C ++ ++ G+Q+ + ++ N++VG++L+ KCG D ++FE+M R+
Sbjct: 435 LSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDN 494
Query: 63 VSWTAIIAAFAQE 75
V+W II ++ Q+
Sbjct: 495 VTWNTIIGSYVQD 507
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q CL+V+ G +++ GSSLI KCG D K+F +P +V
Sbjct: 536 LKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV 595
Query: 63 VSWTAIIAAFAQ 74
VS A+IA ++Q
Sbjct: 596 VSMNALIAGYSQ 607
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ G N+ G A++ G +N+YVGSSL+S KC + K+FE + +N
Sbjct: 334 LSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKND 393
Query: 63 VSWTAIIAAFAQEWE 77
V W A+I +A E
Sbjct: 394 VFWNAMIRGYAHNGE 408
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C N+ G Q C ++ G N Y G +L+ KC D ++FE + N
Sbjct: 167 LSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNT 226
Query: 63 VSWTAIIAAFAQ 74
V WT + + + +
Sbjct: 227 VCWTCLFSGYVK 238
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVVS 64
C ++R G L + ++LI KCG+ ++F++M R NVVS
Sbjct: 742 CSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVS 801
Query: 65 WTAIIAAFAQ 74
W ++I +A+
Sbjct: 802 WNSLINGYAK 811
>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770
OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
Length = 774
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 2 PVTSCGSTRNIRG---GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58
P C S I G G Q CLA+R GF ++++ +SL+ K + +F +MP
Sbjct: 252 PREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMP 311
Query: 59 VRNVVSWTAIIAAFAQEWEVDMCYTFI 85
NVVSW +I F QE+ D F+
Sbjct: 312 EVNVVSWNIMIVGFGQEYRSDKSVEFL 338
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDV-YKMFEKMPVRNVVSWTAIIAAFA 73
G + +AV++G N++VG++L+S KCG +D ++FE + N VS+TA+I A
Sbjct: 157 GMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLA 216
Query: 74 QEWEV 78
+E +V
Sbjct: 217 RENKV 221
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC ++ G Q+ L V+SG+V++ +V ++L KCGE + F+ + +N
Sbjct: 526 LSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNT 585
Query: 63 VSWTAIIAAFAQEWEVD 79
V W +I + D
Sbjct: 586 VIWNEMIHGYGHNGRGD 602
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
VR G ++ Y+ + L+ +CG+ K+F++M VR+V SW A +
Sbjct: 33 VRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFL 79
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
V +VY ++ ++F K G+ + ++F+ MP R+VVSW +I+ ++
Sbjct: 69 VRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRK 116
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEK-MPVR 60
++SC R + GG Q + +R+ N ++ S LI+ +C E +++ + +F+ +
Sbjct: 423 LSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSEC-EKMEISECIFDDCINEL 481
Query: 61 NVVSWTAIIAAFAQ 74
++ W ++I+ F
Sbjct: 482 DIACWNSMISGFRH 495
>sp|Q9FJY9|PP448_ARATH Pentatricopeptide repeat-containing protein At5g66500,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2
SV=1
Length = 532
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ C ++ G Q C+A+R+GFV++ + + L+ GKCG+ + +F +P ++V
Sbjct: 288 LAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSV 347
Query: 63 VSWTAIIAAFA 73
VSWT++I A+A
Sbjct: 348 VSWTSMIDAYA 358
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q L ++ G ++LI K G +D ++FE + +++VSW A+++ F +
Sbjct: 103 GRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLR 162
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID-VYKMFEKMPVRN 61
+ +CG+ +++ G Q+ R VYVG+++I KC E+ID K+F++MP R+
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKC-ESIDCARKVFDEMPERD 214
Query: 62 VVSWTAIIAAFAQ 74
V+SWT +IAA+A+
Sbjct: 215 VISWTELIAAYAR 227
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVY--KMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+R G + Y+ + LI K G +D Y ++ E + RN WTA+I +A E + D
Sbjct: 73 LRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFD 131
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 21 LAVRSGFVAN--VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+A +SG+ + V +GS+LI KCG + +F M +NV +++++I A
Sbjct: 306 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLA 360
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V++C + I G++ +AV+ GF+ +V VG+SL+ KCG+ D K+F+ + ++V
Sbjct: 359 VSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDV 418
Query: 63 VSWTAIIAAFAQ 74
+W ++I + Q
Sbjct: 419 YTWNSMITGYCQ 430
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75
+V+V + L+S KCG D K+F+ M RN+ +W+A+I A+++E
Sbjct: 114 DVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRE 159
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 37/69 (53%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C + ++ G + ++ G + + V +S+++ KCGE K F +M R+V++W
Sbjct: 191 CANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAW 250
Query: 66 TAIIAAFAQ 74
+++ A+ Q
Sbjct: 251 NSVLLAYCQ 259
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PVR 60
+++C S N++ G + Q L +RSGF A++ V +SLI GKC + + K+F M R
Sbjct: 77 LSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCDSR 136
Query: 61 NVVSWTAIIAAF--AQEWEVDM 80
N V+W +++ A+ A+++E +
Sbjct: 137 NEVTWCSLLFAYMNAEQFEAAL 158
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + CL + GF YVG++L++ KCG+ + + F + +++VSW ++ AF
Sbjct: 356 GKMIHGCL-IHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFG 414
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86
+S+I C K GE ++F P +N+V+WT +I + + + + F V
Sbjct: 275 NSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFV 326
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
+ N+ G + +++G+ + V +S++SF K G D + E + V VSW +I
Sbjct: 218 SSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSI 277
Query: 69 IAA 71
I A
Sbjct: 278 IDA 280
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWT 66
S + G Q L ++ G+ NVYVGSSL+ KC D ++ F+++ N VSW
Sbjct: 112 ASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWN 171
Query: 67 AIIAAFAQEWEVDMCY 82
A+IA F Q ++ +
Sbjct: 172 ALIAGFVQVRDIKTAF 187
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-NVV 63
SC ++ G Q LA +SGFV+N +V SSLI KCG K F+++ + + V
Sbjct: 417 SCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTV 476
Query: 64 SWTAIIAAFAQ 74
+W A+I +AQ
Sbjct: 477 AWNAMILGYAQ 487
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
C A++ G ++++YV + ++ K G +F++MP R+ VSW +I+ +
Sbjct: 23 HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGY 76
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK--CGENIDVYKMFEKMPVR 60
+++C + G + ++ G ++LIS + G D +FE + +
Sbjct: 312 LSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSK 371
Query: 61 NVVSWTAIIAAFAQE 75
+++SW +II FAQ+
Sbjct: 372 DLISWNSIITGFAQK 386
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+T+CG+ R ++ G + + +G +NV V SSL+ GKCG + ++F M +N
Sbjct: 272 LTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNS 331
Query: 63 VSWTAIIAAFAQEWE 77
VSW+A++ + Q E
Sbjct: 332 VSWSALLGGYCQNGE 346
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C +R G + VR G NV V S+LI GK G +++ KM +RN+
Sbjct: 369 LKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNM 428
Query: 63 VSWTAIIAAFAQ 74
++W A+++A AQ
Sbjct: 429 ITWNAMLSALAQ 440
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
V +C +R G + + + GF N ++ S+L G E +D ++F++MP +V
Sbjct: 170 VKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDV 229
Query: 63 VSWTAIIAAFAQ 74
+ WTA+++AF++
Sbjct: 230 ICWTAVLSAFSK 241
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI-DVYKMFEKMPVRN 61
+ +C + G Q+ V+SG + VG+SL+S K G + + ++F+ V++
Sbjct: 68 LQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKD 127
Query: 62 VVSWTAIIAAF 72
+SWT++++ +
Sbjct: 128 AISWTSMMSGY 138
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
VT+ G+ +++ G ++ C ++ G N Y+ ++L+ KCG D +K F+ R+V
Sbjct: 562 VTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621
Query: 63 VSWTAIIAAFAQEWE 77
V W ++I+++A E
Sbjct: 622 VCWNSVISSYANHGE 636
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + GG Q +R G + + + LI KCG I +K+F MP +N+
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315
Query: 63 VSWTAIIAAFAQ 74
+SWT +++ + Q
Sbjct: 316 ISWTTLLSGYKQ 327
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM-FEKMPVRNVVSWTAIIAA 71
Q Q V+SGF +VYVG+ LI F K G NID ++ F+ +P ++ V+WT +I+
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDG-NIDYARLVFDALPEKSTVTWTTMISG 223
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC S + GTQ +++ + YV +SLI KC D K+F+ +V
Sbjct: 357 LTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADV 416
Query: 63 VSWTAIIAAFAQ---EWEV 78
V + A+I +++ +WE+
Sbjct: 417 VLFNAMIEGYSRLGTQWEL 435
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
G + Y+ + LI+ + G + K+FEKMP RN+VSW+ +++A
Sbjct: 74 GLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSA 119
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TS G ++ I G L + G +++ GS+LI C D +F++M V+++
Sbjct: 467 LTSLGLSKQIHG------LMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 63 VSWTAIIAAFAQEWE 77
V W ++ A + Q+ E
Sbjct: 521 VIWNSMFAGYVQQSE 535
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S ++ G + + ++ GFV++VYV +SLIS K G D K+FE+MP R++
Sbjct: 137 IKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDI 196
Query: 63 VSWTAIIAAF 72
VSW ++I+ +
Sbjct: 197 VSWNSMISGY 206
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P ++ R I G A+R GF+ ++ + ++LI G+CG+ +F++M +
Sbjct: 341 LPASAILEGRTIHG------YAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEK 394
Query: 61 NVVSWTAIIAAFAQ 74
NV+SW +IIAA+ Q
Sbjct: 395 NVISWNSIIAAYVQ 408
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
G + V+S + +N + +SL+ CG+ D K F + +++VVSW +II A+A
Sbjct: 450 GREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYA 508
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
+C + + G + C AVRS +V V +S++ K GE ++F M RN+V
Sbjct: 240 ACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIV 299
Query: 64 SWTAIIAAFAQEWEV 78
+W +I +A+ V
Sbjct: 300 AWNVMIGCYARNGRV 314
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG +R G + L V+SGF +++ + L + KC + + K+F++MP R++VSW
Sbjct: 145 CGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSW 204
Query: 66 TAIIAAFAQ 74
I+A ++Q
Sbjct: 205 NTIVAGYSQ 213
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+P S + R I G + A+RSGF + V + ++L+ KCG ++F+ M R
Sbjct: 243 LPAVS--ALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLER 300
Query: 61 NVVSWTAIIAAFAQ 74
NVVSW ++I A+ Q
Sbjct: 301 NVVSWNSMIDAYVQ 314
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C ++ G L+V G NV V +SLIS KC E MF K+ R +VS
Sbjct: 346 ACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS 405
Query: 65 WTAIIAAFAQ 74
W A+I FAQ
Sbjct: 406 WNAMILGFAQ 415
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+ +RS NV+V ++L+ KCG + +F+ M R+V +W A+I +
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+TSC + G Q L V+ + ++++VGSSL+ K G+ + ++FE +P R+V
Sbjct: 160 LTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDV 219
Query: 63 VSWTAIIAAFAQ 74
VS TAIIA +AQ
Sbjct: 220 VSCTAIIAGYAQ 231
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R +R G + +++ ++ Y+ + L+ F GKC D K+ ++MP +NV
Sbjct: 59 LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118
Query: 63 VSWTAIIAAFAQ 74
VSWTA+I+ ++Q
Sbjct: 119 VSWTAMISRYSQ 130
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G Q C +R + +SLI KCG ++F+ MP R +SW A++ +++
Sbjct: 273 GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSK 332
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 22 AVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAF 72
+++ G ++V VGSSLIS GKCG + K+F++MP RNV +W A+I +
Sbjct: 72 SIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGY 122
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + + G + L G N +V ++LI KCG+ + +FE + VR+V
Sbjct: 281 LSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSV 340
Query: 63 VSWTAIIAAFA 73
++I+ A
Sbjct: 341 ACCNSMISCLA 351
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C S +I G Q A G+ ++++V S+LI CG+ D K+F+++P RN+
Sbjct: 83 IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142
Query: 63 VSWTAIIAAF 72
VSWT++I +
Sbjct: 143 VSWTSMIRGY 152
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73
+R G +V VG+S+I KCG K F++M +NV SWTA+IA +
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYG 364
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG+ + R G V+SG V+V SSL GKCG D K+F+++P RN V+
Sbjct: 182 ACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA 241
Query: 65 WTAIIAAFAQ 74
W A++ + Q
Sbjct: 242 WNALMVGYVQ 251
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 43/72 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++ T N++ G + QC +R F +++ + S+++ KCG +D K+F+ +++
Sbjct: 382 MSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDL 441
Query: 63 VSWTAIIAAFAQ 74
+ W ++AA+A+
Sbjct: 442 ILWNTLLAAYAE 453
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVV 63
C R++ G Q +++G + N Y+ + L+ F KC +F K+ VRNV
Sbjct: 80 CVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVF 139
Query: 64 SWTAIIA 70
SW AII
Sbjct: 140 SWAAIIG 146
>sp|Q9FFN1|PP363_ARATH Pentatricopeptide repeat-containing protein At5g03800
OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1
Length = 896
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
CG+ G Q C A+++G+ +++ +G+SLIS KC ++ D K+F M +V+SW
Sbjct: 531 CGTLGFREMGYQIHCYALKAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISW 590
Query: 66 TAIIAAF 72
++I+ +
Sbjct: 591 NSLISCY 597
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK-CGENID-VYKMFEKMPVR 60
+T+C G Q L V+SGF+ +V+V +SL+S K G + D V K+F+++P R
Sbjct: 188 LTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQR 247
Query: 61 NVVSWTAIIAAFAQE 75
+V SW ++++ +E
Sbjct: 248 DVASWNTVVSSLVKE 262
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + + G + A+R G + + V ++LI F K + V ++E M ++
Sbjct: 292 LSSCTDSSVLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDA 351
Query: 63 VSWTAIIAAFAQEWEVD 79
V++T +I A+ VD
Sbjct: 352 VTFTEMITAYMSFGMVD 368
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C G Q C V+ GF +VYV + LI G CG K+F++MP R++
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 217
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++I A + E D
Sbjct: 218 VSWNSMIDALVRFGEYD 234
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFV---ANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
+++C ++ GT +R V +V V +SLI KCG ++F+ M
Sbjct: 258 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 317
Query: 60 RNVVSWTAIIAAFAQEWEVDMCYTF 84
R++ SW A+I FA + F
Sbjct: 318 RDLASWNAMILGFATHGRAEEAMNF 342
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G Q +++G V NV+VGSSLI KCG K+F M N+V+
Sbjct: 485 ACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVA 544
Query: 65 WTAIIAAFAQ 74
W ++I+ +++
Sbjct: 545 WNSMISCYSR 554
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + N G Q C V+ G + YV +SL+S KCG + +F + + +
Sbjct: 281 ACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEI 340
Query: 65 WTAIIAAFAQ 74
W A++AA+A+
Sbjct: 341 WNAMVAAYAE 350
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 33 VGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
+ S+L++ KCG + D Y +F+ M +++V+W ++I+ +
Sbjct: 410 IESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCK 451
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 36/71 (50%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ + ST ++ G +R G ++ ++ ++LI KCG + +F+KM +++
Sbjct: 584 LVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSL 643
Query: 63 VSWTAIIAAFA 73
++W +I +
Sbjct: 644 ITWNLMIYGYG 654
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q +R GF +N+++ S+L+ KCG K+F++M V +
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE 409
Query: 63 VSWTAIIAAFA 73
VSWTAII A
Sbjct: 410 VSWTAIIMGHA 420
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
G + +R G ++VY+GSSL+ K D ++F ++ R+ +SW +++A + Q
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC---GENIDVYKMFEKMPV 59
+ SC ++R G VR G ++Y G++L++ K G I V +F++MP
Sbjct: 112 LKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQ 171
Query: 60 R 60
R
Sbjct: 172 R 172
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 50 VYKMFEKMPVRNVVSWTAIIAAFAQ 74
V ++FE MP ++VVS+ IIA +AQ
Sbjct: 195 VRRVFEVMPRKDVVSYNTIIAGYAQ 219
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C ++ G Q L +RSGF +V V + LI F GKC + +F +M +N
Sbjct: 216 LNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA 275
Query: 63 VSWTAIIAAFAQEWE 77
VSW +++AA+ Q E
Sbjct: 276 VSWCSLVAAYVQNHE 290
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G AV++ ++VGS+L+ GKCG D + F++MP +N+
Sbjct: 317 LSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376
Query: 63 VSWTAIIAAFAQEWEVDM 80
V+ ++I +A + +VDM
Sbjct: 377 VTRNSLIGGYAHQGQVDM 394
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70
G Q LAV+ G + +V+VG S K D K+F+++P RN+ +W A I+
Sbjct: 127 GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFIS 182
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 58 PVRNVVSWTAIIAAFAQ 74
P RNVVSWT++I+ AQ
Sbjct: 69 PARNVVSWTSLISGLAQ 85
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ G Q + +S +V +SLIS KCGE D +K+FE M ++VV+W
Sbjct: 294 CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 353
Query: 66 TAIIAAFAQEWEVD 79
A+I+ +AQ D
Sbjct: 354 NAMISGYAQHGNAD 367
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 35 SSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
+++IS +CG+ F+ PVR VV+WTA+I + + +V++
Sbjct: 190 NAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVEL 235
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ S +TR + G + V+ G NV V +SL++ KCG+ + +F++M VR++
Sbjct: 153 LASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDI 212
Query: 63 VSWTAIIAAFAQEWEVDM 80
SW A+IA Q ++D+
Sbjct: 213 SSWNAMIALHMQVGQMDL 230
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 40/66 (60%)
Query: 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78
C ++SG + +VY+ ++L++ K G + K+F++MP+R SW +++A+++ ++
Sbjct: 37 HCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDM 96
Query: 79 DMCYTF 84
D F
Sbjct: 97 DSTCEF 102
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RNVVSWTAIIAAFA 73
G Q AV+SG + +V V ++LI+ K G + F+ + R+ VSWT++I A A
Sbjct: 432 GKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALA 491
Query: 74 Q 74
Q
Sbjct: 492 Q 492
>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2
SV=2
Length = 775
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59
M V++C GT L ++ GF N VG+S + F KCG D +F++MP
Sbjct: 130 MVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPD 189
Query: 60 RNVVSWTAIIAAFAQEWE 77
R+VV+WTAII+ Q E
Sbjct: 190 RDVVAWTAIISGHVQNGE 207
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C + ++ G AV++G ++ +V SS+ SF K G + Y F ++ ++ S
Sbjct: 239 ACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFS 298
Query: 65 WTAIIAAFAQEWEVDMCY 82
WT+IIA+ A+ +++ +
Sbjct: 299 WTSIIASLARSGDMEESF 316
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++SC + G C V++ + V +SLI GK G+ ++MF + NV
Sbjct: 440 ISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT-NV 498
Query: 63 VSWTAIIAAFAQ 74
++W A+IA++
Sbjct: 499 ITWNAMIASYVH 510
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ V C + ++ ++ L + G N++V S LIS G+ ++F + R
Sbjct: 29 ISVILCDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRR 88
Query: 61 NVVSWTAIIAA-FAQ-EWEVDMCYTF 84
++ W +II A F+ ++ +C+ F
Sbjct: 89 DIFLWNSIIKAHFSNGDYARSLCFFF 114
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C + G Q L ++SG V +V+V ++L++ G+ G K+ ++MPVR+
Sbjct: 147 LKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDA 206
Query: 63 VSWTAIIAAFAQEWEVD 79
VSW ++++A+ ++ VD
Sbjct: 207 VSWNSLLSAYLEKGLVD 223
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74
NV + +IS G + ++F+ MPVR+VVSW A++ A+A
Sbjct: 236 NVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAH 280
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C S ++ G + G ++ ++L+ KCG+ ++F R+V
Sbjct: 311 LSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370
Query: 63 VSWTAIIA 70
+W +II+
Sbjct: 371 STWNSIIS 378
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67
+ R + G + CLA++ GF+ +VYV +SLI + + +F++MPVR++ SW A
Sbjct: 162 ACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNA 221
Query: 68 IIAAFAQ 74
+I+ + Q
Sbjct: 222 MISGYCQ 228
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+++C + G +++ G + ++V + LI + G D K+F++M VR++
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDL 313
Query: 63 VSWTAIIAAF 72
+SW +II A+
Sbjct: 314 ISWNSIIKAY 323
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+C +R G + +++G +V+V +SL GKCG D +F ++P N V
Sbjct: 460 ACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVP 519
Query: 65 WTAIIA 70
W +IA
Sbjct: 520 WNTLIA 525
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 11 NIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+IR Q +R G F+ ++ +G++++ K G +F +P +V+SW II
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422
Query: 70 AAFAQ 74
+ +AQ
Sbjct: 423 SGYAQ 427
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
++ C S ++ G Q VR F +VYV S L++ KCGE + +F++ P +++
Sbjct: 338 LSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDI 397
Query: 63 VSWTAIIAAFA 73
+ W +II+ +A
Sbjct: 398 IMWNSIISGYA 408
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80
N+ + L+S K GE + K+F+ MP RNVVSWTA++ + +VD+
Sbjct: 78 NIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDV 128
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 49 DVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
D K+F++MP RN++SW +++ + + E+D
Sbjct: 66 DARKLFDEMPDRNIISWNGLVSGYMKNGEID 96
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 48 IDVYK-MFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+DV + +F KMP +N VSWT ++ F Q+ +D
Sbjct: 126 VDVAESLFWKMPEKNKVSWTVMLIGFLQDGRID 158
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79
+V +++++ G+ D K+F+ MP + VSWT+++ + Q ++
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIE 251
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +C R I G S F ++YV ++L+ F KCGE K+F++MP R++
Sbjct: 110 LKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDM 169
Query: 63 VSWTAIIAAFA 73
V+W A+I+ F+
Sbjct: 170 VAWNAMISGFS 180
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 40/66 (60%)
Query: 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSW 65
C ++ GG C AV++GF+ ++ V +++ISF K G D ++ F ++ +++V+S+
Sbjct: 318 CARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISY 377
Query: 66 TAIIAA 71
++I
Sbjct: 378 NSLITG 383
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK-MFEKMPVRN 61
+T+C + G+ V G+ N + ++L+ KCG+ +DV K +F+ M R+
Sbjct: 416 LTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGK-LDVAKRVFDTMHKRD 474
Query: 62 VVSWTAIIAAFA 73
+VSW ++ F
Sbjct: 475 IVSWNTMLFGFG 486
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEW 76
Q +R GF ++V+VG+ +I++ KC K+F++M R+VVSW ++I+ ++Q
Sbjct: 153 QVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSG 212
Query: 77 EVDMC 81
+ C
Sbjct: 213 SFEDC 217
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAI 68
+ N++GG + A+R+G N+YV +S+I K G + ++F+ R++++WTAI
Sbjct: 379 SSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAI 438
Query: 69 IAAFAQEWEVD 79
I A+A + D
Sbjct: 439 ITAYAVHGDSD 449
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 36/68 (52%)
Query: 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVS 64
+CG + ++ G + + + ++ + +++I F KCG +F++M ++ V+
Sbjct: 243 ACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVT 302
Query: 65 WTAIIAAF 72
+ AII+ +
Sbjct: 303 YGAIISGY 310
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71
G Q C ++SG N+ + LI KC E + YK+F+ MP RNVVSW+A+++
Sbjct: 25 GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSG 81
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV 62
+ +CG + G Q ++ GF V VG+SL+ KCG + K+F ++ R++
Sbjct: 114 LKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSL 173
Query: 63 VSWTAIIAAFAQ 74
+SW A+IA F
Sbjct: 174 ISWNAMIAGFVH 185
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 3 VTSCGSTRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMPVR 60
+ +C ST I G Q VRSGF ++ + SL+ KCG K F+++ +
Sbjct: 217 LKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEK 276
Query: 61 NVVSWTAIIAAFAQEWE 77
++SW+++I +AQE E
Sbjct: 277 TMISWSSLILGYAQEGE 293
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 12 IRGGTQYQCLAVR--SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII 69
+R G Q Q LAV+ SG +V +S++ KCG + K F +M +++V+SWT +I
Sbjct: 329 LRQGKQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 386
Query: 70 AAFAQ 74
+ +
Sbjct: 387 TGYGK 391
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,989,172
Number of Sequences: 539616
Number of extensions: 933483
Number of successful extensions: 3501
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2648
Number of HSP's gapped (non-prelim): 832
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)